BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044628
         (665 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/663 (59%), Positives = 499/663 (75%), Gaps = 18/663 (2%)

Query: 1   MLSRCPAPPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHES-- 58
           M+S+C     F  +FK   S  +P      T    NA  HD    S      G +  S  
Sbjct: 1   MISKCRFLSTFIANFKSH-SSASPTPSPTLTGATKNAPSHDPHRQSHSFPYLGGLRASLP 59

Query: 59  ---------THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV 109
                    + S HSF S ALK+SAK GFL  GKQLH+H++KLG CN LSLQNQVLHVYV
Sbjct: 60  ETGFTNLVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYV 119

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTP----YFRRMLLDNVRLDHI 163
           KCK F+D+ K+FDEM ++N+V+WNTLI G++  NC   +      YFR+M+L+ +  + I
Sbjct: 120 KCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCI 179

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T N LLRA ++ +D+ + R+LH FILK GF  NCFV SALVD Y K G V++A+  FDEV
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RDLVLWNVMVSCYALN +   A  VF LMRLEG+KGD FTF+S++NSCG LGS  LG+
Sbjct: 240 SSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGK 299

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+HGL+I+ SFDLDVLVA++LVDMY+KN NI+DA + FDGM  KN+VSW TM+VG+GQ+G
Sbjct: 300 QVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHG 359

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           DG+EA++LL++M++    PDE+ LASILSSCG+LS + E  QVHAY ++NG +AFLSI N
Sbjct: 360 DGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIAN 419

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           AL++AYSKCGSI  A Q F SV EPD+++WTS++GAYAFHGLSKE +EVFEKML   VRP
Sbjct: 420 ALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRP 479

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D +AFL VLSAC+HGG V EGL YFNLMI+ Y I+PDSEHYTC+ DLLGR G L EA +L
Sbjct: 480 DKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINL 539

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           L SMP+EPRSDTLGAF+GACKVH ++GLA+WA+EKL  +EP++P NY+L+SN+YAS   W
Sbjct: 540 LTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHW 599

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           FDVAR+RK+MR+ CD KVPGCSW+EIAGE+HTFVS D++HP+AV +Y ML  +  LMEE+
Sbjct: 600 FDVARVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEED 659

Query: 644 NVS 646
           +VS
Sbjct: 660 DVS 662


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/664 (58%), Positives = 494/664 (74%), Gaps = 19/664 (2%)

Query: 1   MLSRCPAPPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHES-- 58
           M+S+C     F  +FK   S  +P      T    NA  HD    S      G +  S  
Sbjct: 1   MISKCRFLSTFIANFKSH-SSASPTPSXTLTGATKNAPSHDPHRQSHSFPYLGXLRASLP 59

Query: 59  ---------THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV 109
                    + S HSF S ALK+SAK GFL  GKQLH+H++KLG CN LSLQNQVLHVYV
Sbjct: 60  ETGFTXLVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYV 119

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPY----FRRMLLDNVRLDHI 163
           KCK F+D+ K+FDEM ++N+V+WNTLI G++  NC   +       FR+M+L+ +  + I
Sbjct: 120 KCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCI 179

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T N LLRA ++ +D+ + R+LH FILK GF  NCFV SALVD Y K G V++A+  FDEV
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RDLVLWNVMVSCYALN +   A  VF LMRLEG+KGD FTF+S++NSCG LGS  LG+
Sbjct: 240 SSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGK 299

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+HGL+I+ SFDLDVLVA++LVDMY+KN NI+DA + FDGM  KN+VSW TM VG+GQ+G
Sbjct: 300 QVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHG 359

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           DG+E ++LL++M++    PDE+ LASILSSCG+LS + E  QVHAY ++NG +AFLSI N
Sbjct: 360 DGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIAN 419

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           AL++AYSKCGSI  A Q F SV EPD+++WTS++GAYAFHGLSK+ ++VFEK+LS  VRP
Sbjct: 420 ALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRP 479

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D +AFL VLSAC+HGG V EGL YFNLMI+ Y I+PDSEHYT + DLLGR G L EA +L
Sbjct: 480 DKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNL 539

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           L SMP+EPRSDTLGAF+GACKV+ ++GLA+WA+EKL  +EP++P  Y+L+SN+YAS   W
Sbjct: 540 LTSMPVEPRSDTLGAFLGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHW 599

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM-EE 642
           FDVAR+RK+MR+ CD KVPGCSW+E AGE+HTFVS D++HP+AV +Y ML  +  LM EE
Sbjct: 600 FDVARVRKLMRERCDFKVPGCSWMETAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMKEE 659

Query: 643 NNVS 646
           ++VS
Sbjct: 660 DDVS 663


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/544 (66%), Positives = 430/544 (79%), Gaps = 9/544 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           GFL++GKQ+HSH++KLG CN LSLQNQ+L+VY+KCK F+   +LFDEM VRN+VTWNT+I
Sbjct: 2   GFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVI 61

Query: 137 SGIINCGGNVTP--------YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
            G+++C G+           YFR+MLLD V  D IT N LLRAC++ +D+E+GR LH FI
Sbjct: 62  CGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFI 121

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +K+GF +N FV+SALVDLYGKCG V++ARR FDEV CRDLVLWNVM+SCYA+NCL + A 
Sbjct: 122 VKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEAS 181

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
             F LM+ E    D FTFSS++NSCGTLGS  LGRQIHGL IK SFDLDVLVA+ LVDMY
Sbjct: 182 GFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMY 241

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK+ NIDDA + FDGM A+NVVSWNTMVVG+G+ GDG EA+KLL  M Q    PDE+TLA
Sbjct: 242 AKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLA 301

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           SI+ SC S   SCE  QV+AY +KNG  AFLSI NALINAYSK GSIA ALQCF +V EP
Sbjct: 302 SIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEP 361

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           DLVTWTS+IGAYAFH L K SI+ FE+ML+  V PD I FLEVLSACSH GLV+EGL YF
Sbjct: 362 DLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYF 421

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
           +LM  DYHILP  EHYTCL DLLGR GLL EA+++L SM I   SDTLGAFIGACK+HG 
Sbjct: 422 SLM-KDYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGACKIHGD 480

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           + LAKWAAEKL E+EP+KPVNY L+S+V+ASE  W DVAR+ K+MRD C H VPGCSW+E
Sbjct: 481 VKLAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVARIHKLMRDRCGHGVPGCSWME 540

Query: 609 IAGE 612
            AG+
Sbjct: 541 YAGD 544



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 201/397 (50%), Gaps = 15/397 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+   +   ++ G++LH  I+KLG      + + ++ +Y KC    +  + FDE+  R++
Sbjct: 102 LRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDL 161

Query: 130 VTWNTLISGI-INC-GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++S   +NC     + +F+ M  +N   D  TF+S+L +C       +GR++H  
Sbjct: 162 VLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGL 221

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K+ F L+  V+S LVD+Y K   ++DAR+ FD +  R++V WN MV  Y    LGDG 
Sbjct: 222 SIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGR--LGDGG 279

Query: 248 IAVFNLMRL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+  L+ +  E ++ D  T +S++ SC +  +S    Q++  V+K  F   + +A +L+
Sbjct: 280 EAMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALI 339

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           + Y+K G+I  A + F+ +   ++V+W +++  +  +   + ++    +ML     PD++
Sbjct: 340 NAYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQI 399

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFG 423
               +LS+C    +  E   +H +++         +E+   LI+   + G +  A     
Sbjct: 400 VFLEVLSACSHAGLVNEG--LHYFSLMKDYHILPGLEHYTCLIDLLGRAGLLDEAFNILN 457

Query: 424 SVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           S+      D  T  + IGA   HG  K +    EK+ 
Sbjct: 458 SMSIGYSSD--TLGAFIGACKIHGDVKLAKWAAEKLF 492



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 2/262 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L      G    G+Q+H   +KL     + + + ++ +Y K +  DD  K FD M 
Sbjct: 199 FSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMA 258

Query: 126 VRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+WNT++ G   +  GG        M  +++R D IT  S++R+C  A       +
Sbjct: 259 ARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQ 318

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +++++LK GF     +++AL++ Y K G +  A + F+ VL  DLV W  ++  YA + L
Sbjct: 319 VNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSL 378

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +I  F  M  +G+  D   F  ++++C   G    G     L+        +   T 
Sbjct: 379 PKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYFSLMKDYHILPGLEHYTC 438

Query: 304 LVDMYAKNGNIDDACRVFDGMT 325
           L+D+  + G +D+A  + + M+
Sbjct: 439 LIDLLGRAGLLDEAFNILNSMS 460



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           +G  + G+Q+H  VIK  F   + +   ++++Y K  + + A R+FD M  +NVV+WNT+
Sbjct: 1   MGFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTV 60

Query: 336 VVGF--GQNGDGREAVKL----LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           + G    +  D   +V +     R ML      D +TL  +L +C  L+     R++H +
Sbjct: 61  ICGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCF 120

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            +K G      + +AL++ Y KCG +  A + F  V   DLV W  ++  YA + L++E+
Sbjct: 121 IVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEA 180

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
              F+ M       D   F  +L++C   G  + G +   L I
Sbjct: 181 SGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSI 223


>gi|297745358|emb|CBI40438.3| unnamed protein product [Vitis vinifera]
          Length = 1079

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/663 (55%), Positives = 468/663 (70%), Gaps = 55/663 (8%)

Query: 1   MLSRCPAPPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHES-- 58
           M+S+C     F  +FK   S  +P      T    NA  HD    S      G +  S  
Sbjct: 1   MISKCRFLSTFIANFKSH-SSASPTPSPTLTGATKNAPSHDPHRQSHSFPYLGGLRASLP 59

Query: 59  ---------THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV 109
                    + S HSF S ALK+SAK GFL  GKQLH+H++KLG CN LSLQNQVLHVYV
Sbjct: 60  ETGFTNLVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYV 119

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTP----YFRRMLLDNVRLDHI 163
           KCK F+D+ K+FDEM ++N+V+WNTLI G++  NC   +      YFR+M+L+ +  + I
Sbjct: 120 KCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCI 179

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T N LLRA ++ +D+ + R+LH FILK GF  NCFV SALVD Y K G V++A+  FDEV
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RDLVLWNVMVSCYALN +   A  VF LMRLEG+KGD FTF+S++NSCG LGS  LG+
Sbjct: 240 SSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGK 299

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+HGL+I+ SFDLDVLVA++L                                     +G
Sbjct: 300 QVHGLIIRLSFDLDVLVASAL-------------------------------------HG 322

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           DG+EA++LL++M++    PDE+ LASILSSCG+LS + E  QVHAY ++NG +AFLSI N
Sbjct: 323 DGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIAN 382

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           AL++AYSKCGSI  A Q F SV EPD+++WTS++GAYAFHGLSKE +EVFEKML   VRP
Sbjct: 383 ALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRP 442

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D +AFL VLSAC+HGG V EGL YFNLMI+ Y I+PDSEHYTC+ DLLGR G L EA +L
Sbjct: 443 DKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINL 502

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           L SMP+EPRSDTLGAF+GACKVH ++GLA+WA+EKL  +EP++P NY+L+SN+YAS   W
Sbjct: 503 LTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHW 562

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           FDVAR+RK+MR+ CD KVPGCSW+EIAGE+HTFVS D++HP+AV +Y ML  +  LMEE+
Sbjct: 563 FDVARVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEED 622

Query: 644 NVS 646
           +VS
Sbjct: 623 DVS 625


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/616 (57%), Positives = 457/616 (74%), Gaps = 19/616 (3%)

Query: 46  SSQLRNSGTIHESTH-----SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL 100
           SS+LR S  I   TH     + H F S ALK+SAK G+L +GKQLH+H++K G C  LSL
Sbjct: 38  SSRLRASMPIPNQTHFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSL 97

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN----------VTPYF 150
           QNQ+L VY+KC+  +D +KLF+E+ VRN+V+WN +I   +  G N             YF
Sbjct: 98  QNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASV--GRNDENESSGMRLCFSYF 155

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           RRMLL+ +  DHITFN L+  C Q +DIE+G +LH F +KVGF L+CFV  ALV LY KC
Sbjct: 156 RRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKC 215

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           GFVE+ARRVF +V CRDLV+WNVMVSCY  N L + A  VFN MRL+ + GD FTFSSL+
Sbjct: 216 GFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLL 275

Query: 271 N--SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +  S   L     G+Q+H LV++QSFD DVLVA++L++MYAK+ NI DA RVFD M+ +N
Sbjct: 276 SVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRN 335

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VV+WNTM+VGFG +GDG E +KL+++ML+  F PDE+T++SI+SSCG  S   ET QVHA
Sbjct: 336 VVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHA 395

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           +A+K   Q FLS+ N+LI+AYSKCGSI  A +CF    +PDLVTWTS+I AYAFHGL+++
Sbjct: 396 FAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEK 455

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
           S E+FEKMLS+ ++PD IAFL VLSAC+H GLV++GL YF LM + Y I+PDSEHYTCL 
Sbjct: 456 STEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLV 515

Query: 509 DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568
           DLLGR GL+ EA+++L SMPIE  SDTLGAFIG+CK+H ++ LAK AAEKL  +EP K V
Sbjct: 516 DLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSV 575

Query: 569 NYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVH 628
           NYA++SN++AS++ W+DV R+RK M D  D KVPGCSWIEI  +IH+FVS+D+SHP A+ 
Sbjct: 576 NYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFVSNDKSHPNALE 635

Query: 629 MYAMLCTVFGLMEENN 644
           MY  L  +   M+E N
Sbjct: 636 MYVTLNMLLRPMKEQN 651


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/641 (54%), Positives = 459/641 (71%), Gaps = 16/641 (2%)

Query: 14  HFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIH-ESTHSAHSFYSQALKV 72
           HFK+ L +  P +  +  T  T    H  S++ + +      H    H+ H F + ALKV
Sbjct: 6   HFKKQLRF--PPIPYSFVTQCT----HSWSIIRASVPVPDETHFRDPHTVHLFCANALKV 59

Query: 73  SAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
           SAK   L +GKQLH+H++K G C+ LSLQNQ+L VY+KC   DD EKLF+E+ VRN+V+W
Sbjct: 60  SAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSW 119

Query: 133 NTLISGIINCGG---------NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           N LI GI+ CG              YF+RMLL+ V  D  TFN L   CV+  DI++G +
Sbjct: 120 NILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQ 179

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH F +K+G  L+CFV S LVDLY +CG VE+ARRVF  V  RDLV+WNVM+SCYALNCL
Sbjct: 180 LHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCL 239

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A  +FNLMR +G  GD FTFS+L++ C +L     G+Q+HG +++ SFD DVLVA++
Sbjct: 240 PEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASA 299

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MYAKN NI DA R+FD M  +NVV+WNT++VG+G   +G E +KLLR+ML+  F PD
Sbjct: 300 LINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPD 359

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           E+T++S +S CG +S   ET Q HA+A+K+  Q FLS+ N+LI+AYSKCGSI  A +CF 
Sbjct: 360 ELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFR 419

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             +EPDLV+WTS+I AYAFHGL+KE+ EVFEKMLS  + PD I+FL VLSACSH GLV++
Sbjct: 420 LTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTK 479

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL YFNLM S Y I+PDS HYTCL DLLGR GL+ EA++ L SMP+E  S+TLGAF+ +C
Sbjct: 480 GLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASC 539

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            +H +IGLAKWAAEKL  +EP K VNYA++SN+YAS R W DV R+R+MM + CD +VPG
Sbjct: 540 NLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPG 599

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           CSWIEI  ++H+FVS+D+ HP+A+ M+A L  +   M+E +
Sbjct: 600 CSWIEITNQVHSFVSNDKIHPKALEMHATLKMLLWPMKEKS 640


>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 616

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/603 (56%), Positives = 428/603 (70%), Gaps = 16/603 (2%)

Query: 55  IHESTHSA-----HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV 109
           I  STH       HSF    LK +A    + +   LHS ++KLGL N+LS+QN++L VYV
Sbjct: 3   IWTSTHFGRSRLVHSFSFNVLKAAAPVNSIPRDTLLHSLVVKLGLINELSVQNKLLRVYV 62

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG---------GNVTPYFRRMLLDNVRL 160
           KC+  D    LFDEM  RN+V+WNT+I G+++ G          ++  YF++ML+  V  
Sbjct: 63  KCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKKMLMGLVDP 122

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D ITFN L R+CV  +D+E GR+LHSF++K+GF L+CFV SA+VD Y KCG  EDAR  F
Sbjct: 123 DGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAF 182

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +L RDLVLWNVM+ C   N L   AI VF LM+LEG KGD FTFSSL++ C   GS +
Sbjct: 183 SCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSLCKYKGSGE 242

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG+Q+H L+IKQSFDLD+LVA+SLV++YAKN N+ DA +VFD M  +N VSW TM+VG+G
Sbjct: 243 LGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPTRNSVSWTTMIVGYG 302

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+  G+EAVKL R ML+  +CPDE+T AS+LSSCG  S + E  QVH+  IK G +AFLS
Sbjct: 303 QHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCGFTSGASELMQVHSCLIKLGFEAFLS 362

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I N LI AYSKCG IA ALQCF  V EPDLVTWTSII   A  GL K+++++F+KMLS+ 
Sbjct: 363 INNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLALCGLEKDAVKLFDKMLSYG 422

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           +RPD IAFL VLSACSHGG VS GL YFNLM + Y ++PDSEH TCL DLLGR G L +A
Sbjct: 423 IRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVPDSEHLTCLIDLLGRAGSLDQA 482

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           +DLL SMP E   D L AFI AC+ HG++ LAK A E     EP +PVNY+LVSN+YASE
Sbjct: 483 FDLLKSMPKEAGPDALRAFIRACRTHGNLRLAKRAME--FASEPDEPVNYSLVSNMYASE 540

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W DVAR+RK++ D C+ K PG SW+EIAG  H F+S DRSHPQ++ +YAML  +   M
Sbjct: 541 GRWSDVARMRKLINDRCEQKTPGLSWVEIAGYNHLFISGDRSHPQSLDLYAMLGLLLNTM 600

Query: 641 EEN 643
           +++
Sbjct: 601 KKD 603


>gi|356560343|ref|XP_003548452.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/579 (54%), Positives = 408/579 (70%), Gaps = 18/579 (3%)

Query: 14  HFKRPLSY-LTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIH-ESTHSAHSFYSQALK 71
           HFK+ L + LTP  +  Q T       H  S++ + +      H    H  H F + ALK
Sbjct: 6   HFKKQLLFPLTPCSFVTQCT-------HSWSIIRASVPVPEETHFRDPHIVHLFCANALK 58

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           VSA+   L +GKQLH+H++K G C+ LSLQNQ+L VY+KC   +D+EKLF E+ +RN+V+
Sbjct: 59  VSARRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCMEAEDVEKLFKELPLRNVVS 118

Query: 132 WNTLISGIINCGGNVT---------PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           WN LI GI+ CG  +           YF+RMLL+ V  D  TFN L+  CV+  DI +G 
Sbjct: 119 WNILIHGIVGCGNAIENYSNRQLCFSYFKRMLLETVVPDGTTFNGLIGVCVKFHDIAMGF 178

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LH F +K G  L+CFV S LVDLY KCG VE+A+R F  V  RDLV+WNVM+SCYALN 
Sbjct: 179 QLHCFAVKFGLDLDCFVESVLVDLYAKCGLVENAKRAFHVVPRRDLVMWNVMISCYALNW 238

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L + A  +FNLMRL G  GD FTFSSL++ C TL     G+Q+H ++++QSFD DVLVA+
Sbjct: 239 LPEEAFGMFNLMRLGGANGDEFTFSSLLSICDTLEYYDFGKQVHSIILRQSFDSDVLVAS 298

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L++MYAKN NI DAC +FD M  +NVV+WNT++VG G  G+G + +KLLR+ML+  F P
Sbjct: 299 ALINMYAKNENIIDACNLFDRMVIRNVVAWNTIIVGCGNCGEGNDVMKLLREMLREGFFP 358

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           DE+T+ SI+SSCG  S   ET + H + +K+  Q F S+ N+LI+AYSKCGSI  A +CF
Sbjct: 359 DELTITSIISSCGYASAITETMEAHVFVVKSSFQEFSSVANSLISAYSKCGSITSACKCF 418

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
              +EPDLVTWTS+I AYAFHGL+KE+IEVFEKMLS  V PD I+FL V SACSH GLV+
Sbjct: 419 RLTREPDLVTWTSLINAYAFHGLAKEAIEVFEKMLSCGVIPDRISFLGVFSACSHCGLVT 478

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +GL YFNLM S Y I+PDS  YTCL DLLGR GL+ EA++ L SMP+E  S+TLGAFIG+
Sbjct: 479 KGLHYFNLMTSVYKIVPDSGQYTCLVDLLGRRGLINEAFEFLRSMPMEAESNTLGAFIGS 538

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           C +H +IG+AKWAAEKL   EP K VNYA++SN+YAS R
Sbjct: 539 CNLHENIGMAKWAAEKLFIKEPEKNVNYAVMSNIYASHR 577


>gi|449441630|ref|XP_004138585.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 600

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/555 (56%), Positives = 399/555 (71%), Gaps = 18/555 (3%)

Query: 89  IMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP 148
           ++KLGL N+LS+QN++L VYVKC+  D    LFDEM  RN+++    ++G+         
Sbjct: 51  VVKLGLVNELSVQNKLLRVYVKCRDLDSARNLFDEMARRNVLS----MAGM--------- 97

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
               ML+  V  D ITFN L R+CV  +D+E GR+LHSF++K+GF L+CFV SA+VD Y 
Sbjct: 98  ---EMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYA 154

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KCG  EDAR  F  +L RDLVLWNVM+ C   N L   AI VF LM+LEG KGD FTFSS
Sbjct: 155 KCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSS 214

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           L++SC   GS +LG+Q+H L+IKQSFDLD+LVA+SLV++Y KN N+ DA +VFD M  +N
Sbjct: 215 LLSSCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYTKNDNLYDARKVFDEMPTRN 274

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            VSW TM+VG+GQ+  G+EAVKL R M +  +CPDE+T AS+LSSCG  S + E  QVH+
Sbjct: 275 SVSWTTMIVGYGQHEYGKEAVKLFRRMFRKDYCPDELTFASVLSSCGFTSGASELMQVHS 334

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
             IK G +AFLSI N LI AYSKCG IA ALQCF  + EPDLVTWTSII   A  GL K+
Sbjct: 335 CLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLIAEPDLVTWTSIICGLALCGLEKD 394

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
           ++++F+KMLS+ +RPD IAFL VLSACSHGG VS GL YFNLM + Y ++PDSEH TCL 
Sbjct: 395 AVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVPDSEHLTCLI 454

Query: 509 DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568
           DLLGR G L +A+DLL SMP E   D L AFI AC+ HG++ LAK A E     EP +PV
Sbjct: 455 DLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRTHGNLRLAKRAME--FASEPDEPV 512

Query: 569 NYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVH 628
           NY+LVSN+YASE  W DVAR+RK++ D C+ K PG SW+EIAG  H F+S DRSHPQ++ 
Sbjct: 513 NYSLVSNMYASEGRWSDVARMRKLINDRCEQKTPGLSWVEIAGYNHLFISGDRSHPQSLD 572

Query: 629 MYAMLCTVFGLMEEN 643
           +YAML  +   M+++
Sbjct: 573 LYAMLGLLLNTMKKD 587



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 201/396 (50%), Gaps = 20/396 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ G+QLHS +MK+G      + + V+  Y KC  ++D    F  +  R++V WN ++  
Sbjct: 124 VESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVLWNVMLYC 183

Query: 139 II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  +        FR M L+  + D  TF+SLL +C      E+G++LH  ++K  F L+
Sbjct: 184 CVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSSCKYKGSGELGKQLHCLLIKQSFDLD 243

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V+S+LV++Y K   + DAR+VFDE+  R+ V W  M+  Y  +  G  A+ +F  M  
Sbjct: 244 ILVASSLVNVYTKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMFR 303

Query: 257 EGMKGDYFTFSSLVNSCG-TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           +    D  TF+S+++SCG T G+S+L  Q+H  +IK  F+  + +   L+  Y+K G I 
Sbjct: 304 KDYCPDELTFASVLSSCGFTSGASEL-MQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIA 362

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC- 374
            A + F  +   ++V+W +++ G    G  ++AVKL   ML     PD++    +LS+C 
Sbjct: 363 AALQCFRLIAEPDLVTWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACS 422

Query: 375 --GSLSISCETRQVHAYAI-KNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSV-KEP 428
             G +S+      +H + +  N  Q     E+   LI+   + GS+  A     S+ KE 
Sbjct: 423 HGGFVSMG-----LHYFNLMTNQYQLVPDSEHLTCLIDLLGRAGSLDQAFDLLKSMPKEA 477

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
                 + I A   HG    ++ + ++ +  A  PD
Sbjct: 478 GPDALRAFIRACRTHG----NLRLAKRAMEFASEPD 509



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 4/267 (1%)

Query: 65  FYSQALKVSAKF-GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           F   +L  S K+ G  + GKQLH  ++K      + + + +++VY K     D  K+FDE
Sbjct: 210 FTFSSLLSSCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYTKNDNLYDARKVFDE 269

Query: 124 MRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN V+W T+I G      G      FRRM   +   D +TF S+L +C         
Sbjct: 270 MPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMFRKDYCPDELTFASVLSSCGFTSGASEL 329

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++HS ++K+GF     +++ L+  Y KCG +  A + F  +   DLV W  ++   AL 
Sbjct: 330 MQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLIAEPDLVTWTSIICGLALC 389

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLV 300
            L   A+ +F+ M   G++ D   F  ++++C   G   +G     L+  Q     D   
Sbjct: 390 GLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVPDSEH 449

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAK 327
            T L+D+  + G++D A  +   M  +
Sbjct: 450 LTCLIDLLGRAGSLDQAFDLLKSMPKE 476



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           LV+K     ++ V   L+ +Y K  ++D A  +FD M  +NV+S   M            
Sbjct: 50  LVVKLGLVNELSVQNKLLRVYVKCRDLDSARNLFDEMARRNVLSMAGM------------ 97

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
                 +ML G   PD +T   +  SC  L+     RQ+H++ +K G      + +A+++
Sbjct: 98  ------EMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVD 151

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y+KCG    A   F  +   DLV W  ++    F+ LS+E+IEVF  M     + D   
Sbjct: 152 FYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFT 211

Query: 468 FLEVLSACSHGG 479
           F  +LS+C + G
Sbjct: 212 FSSLLSSCKYKG 223


>gi|297824663|ref|XP_002880214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326053|gb|EFH56473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 585

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/547 (51%), Positives = 368/547 (67%), Gaps = 15/547 (2%)

Query: 71  KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           K+SA    L   KQ H  ++K G  N L  QN++L  Y K + FDD +KLFDEM VRNIV
Sbjct: 44  KLSASLDHLFDVKQKHGFMVKQGTYNSLFFQNKLLQAYTKIREFDDADKLFDEMLVRNIV 103

Query: 131 TWNTLISGIINCGGNVTP-------YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           TWN LI G+I+  G+          Y  R LL  V LDH++F  L+R C  + ++E G +
Sbjct: 104 TWNILIHGVIHRDGDTNHRAHLGFCYLSRSLLSEVILDHVSFIGLIRLCTDSTNVEAGNQ 163

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LHS I+K G   NCF+S++LVD YGKCG + +AR+VF+ VL RDLVLWN +VS Y LN +
Sbjct: 164 LHSLIVKQGLESNCFLSTSLVDFYGKCGLIGEARQVFEAVLVRDLVLWNALVSSYVLNGM 223

Query: 244 GDGAIAVFNLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            D A  +  LM  E  G  GD FT SSL+++CG     K G+QIH +V K S+  D+ VA
Sbjct: 224 IDEAFGLLKLMSSEKNGFTGDDFTLSSLLSACGI----KQGKQIHAIVFKLSYLFDIPVA 279

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T+LV+MYAK+ ++ DA + F+ M  +N+VSWN M+VGFGQNG+GREA++L   ML+ +  
Sbjct: 280 TALVNMYAKSNHMSDAHKCFESMVVRNIVSWNAMIVGFGQNGEGREAMRLFGQMLRENLQ 339

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PDE+T AS+L SC   S   E +QV A   K G   FLS+ N+LI++YS+ G+++ AL C
Sbjct: 340 PDELTFASVLCSCTKFSAIWEIKQVQAMVTKKGSAEFLSVANSLISSYSRTGNLSEALLC 399

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F S++EPDLV+WTS+IGA A HG ++ES+ +FE ML   ++PD I FLEVLSACSHGGLV
Sbjct: 400 FHSIREPDLVSWTSVIGALASHGFAEESLRIFESML-QKLQPDKITFLEVLSACSHGGLV 458

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EGLR F  M   Y I P+ EHYTCL DLLGR G + EA+D+L SMP EP +  L AF G
Sbjct: 459 QEGLRCFKRMTEVYKIEPEEEHYTCLIDLLGRAGFIDEAFDVLKSMPTEPSTHALAAFTG 518

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC-DHK 600
           AC +H  I   KW A+KLLE+EPSKPVNY+++SN YASE  W   A LRK  R NC + K
Sbjct: 519 ACNIHEKIESMKWGAKKLLEIEPSKPVNYSIMSNAYASEGHWNQAALLRKKERRNCYNPK 578

Query: 601 VPGCSWI 607
             GCSW+
Sbjct: 579 TLGCSWL 585


>gi|255541646|ref|XP_002511887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549067|gb|EEF50556.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/433 (62%), Positives = 338/433 (78%), Gaps = 7/433 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ALK+SA  GFLQ G Q+H+H++KLGL N LSLQN++L VYVKCK F D  KLFDEM 
Sbjct: 17  FSKALKLSATTGFLQGGIQVHAHLVKLGLYNVLSLQNKILDVYVKCKEFKDAHKLFDEMT 76

Query: 126 VRNIVTWNTLISGIINCGGNVTP-------YFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           VRN+VTWNT+I G++NCG N  P       YF++MLLD V  D IT N L RAC++ + I
Sbjct: 77  VRNVVTWNTVICGLVNCGNNYKPCLYTGFSYFKKMLLDEVGFDPITLNVLFRACLELNGI 136

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           E+GR+LH  ++K+GF LNC V+SALVDLYGKCG   +AR VFD+V+ +DLVLWNVM+SCY
Sbjct: 137 EIGRQLHCLVVKLGFQLNCLVNSALVDLYGKCGLATEARCVFDDVMYKDLVLWNVMLSCY 196

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           ALN L + A+ VF LM+LE + GD FTFSS++NSC TLGS +LGRQIHGL+ K SFDLD+
Sbjct: 197 ALNSLAEEALTVFKLMQLENLIGDGFTFSSMLNSCATLGSWELGRQIHGLICKLSFDLDI 256

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           LVA+ +V+MYAKN  I+DA + FD MTAKNVVSWNTMVV +G+ GDG+EA+KLL++ML  
Sbjct: 257 LVASGIVNMYAKNEYIEDARKAFDCMTAKNVVSWNTMVVAYGRQGDGKEAMKLLKEMLLE 316

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
            F PDE+TLASILSSCGS+S SCE  QVH Y +K G+Q+FLSI NA+INAYSKCG  A A
Sbjct: 317 DFAPDELTLASILSSCGSVSASCEIMQVHVYVVKFGLQSFLSIGNAMINAYSKCGRAASA 376

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           L+ F SV EP+LVTWTS+I  YAF+ L K+ I++FEKMLS  VRPD IAFL VLSACSH 
Sbjct: 377 LKSFNSVPEPNLVTWTSLISGYAFNSLPKDGIKMFEKMLSAGVRPDQIAFLGVLSACSHA 436

Query: 479 GLVSEGLRYFNLM 491
           G   + L  + ++
Sbjct: 437 GCHPQALEVYCML 449


>gi|15225922|ref|NP_182129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100645|sp|O82363.1|PP203_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g46050, mitochondrial; Flags: Precursor
 gi|3702341|gb|AAC62898.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255542|gb|AEC10636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/547 (49%), Positives = 363/547 (66%), Gaps = 15/547 (2%)

Query: 71  KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           K+SA    L   KQ H  ++K G+ N L LQN++L  Y K + FDD +KLFDEM +RNIV
Sbjct: 44  KLSASLDHLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIV 103

Query: 131 TWNTLISGIINCGGNVTP-------YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           TWN LI G+I   G+          Y  R+L  +V LDH++F  L+R C  + +++ G +
Sbjct: 104 TWNILIHGVIQRDGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAGIQ 163

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  ++K G   +CF S++LV  YGKCG + +ARRVF+ VL RDLVLWN +VS Y LN +
Sbjct: 164 LHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGM 223

Query: 244 GDGAIAVFNLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            D A  +  LM  +    +GDYFTFSSL+++C      + G+QIH ++ K S+  D+ VA
Sbjct: 224 IDEAFGLLKLMGSDKNRFRGDYFTFSSLLSACRI----EQGKQIHAILFKVSYQFDIPVA 279

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T+L++MYAK+ ++ DA   F+ M  +NVVSWN M+VGF QNG+GREA++L   ML  +  
Sbjct: 280 TALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQ 339

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PDE+T AS+LSSC   S   E +QV A   K G   FLS+ N+LI++YS+ G+++ AL C
Sbjct: 340 PDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLC 399

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F S++EPDLV+WTS+IGA A HG ++ES+++FE ML   ++PD I FLEVLSACSHGGLV
Sbjct: 400 FHSIREPDLVSWTSVIGALASHGFAEESLQMFESML-QKLQPDKITFLEVLSACSHGGLV 458

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EGLR F  M   Y I  + EHYTCL DLLGR G + EA D+L SMP EP +  L AF G
Sbjct: 459 QEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTG 518

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC-DHK 600
            C +H      KW A+KLLE+EP+KPVNY+++SN Y SE  W   A LRK  R NC + K
Sbjct: 519 GCNIHEKRESMKWGAKKLLEIEPTKPVNYSILSNAYVSEGHWNQAALLRKRERRNCYNPK 578

Query: 601 VPGCSWI 607
            PGCSW+
Sbjct: 579 TPGCSWL 585


>gi|354805199|gb|AER41617.1| pentatricopeptide [Oryza glumipatula]
          Length = 520

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/468 (46%), Positives = 308/468 (65%), Gaps = 8/468 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE   RD V+WNVMVSCY+ + L
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVVWNVMVSCYSSHGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK--------LGRQIHGLVIKQSFD 295
                 VF  MR  G  GD FTFS+L++   +  S          LG  +HG+VI+    
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLH 147

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           LDV+VAT+L+DMYAK G + +A RVFD M  +N VSWN ++V +G++  G+EA  L   M
Sbjct: 148 LDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSM 207

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           ++  FCPDE+TLAS+LSSC  ++ + E  Q+HAY ++ G+Q FL + NALI AY K G +
Sbjct: 208 MRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFV 267

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + FG +  PDLVTW+S++ ++A+ GLSK +I++F++ML   +R D IAFL VLSAC
Sbjct: 268 QEAKRTFGMIHNPDLVTWSSMVSSFAYLGLSKSAIDLFDRMLQQGIRADGIAFLGVLSAC 327

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GL+ +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D 
Sbjct: 328 SHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDV 387

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
           +GAF+GAC++ G+I  AKWAA +L  L+P  P+NY L+SN YA+   W ++A++R +MR+
Sbjct: 388 IGAFLGACRMRGNIESAKWAASRLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRN 447

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            C +KVPGCSWIEI G + TFVS+D    Q+  M  M+  +  L+E++
Sbjct: 448 MCGNKVPGCSWIEIGGIVQTFVSNDMMLHQSREMQRMMELLVSLVEQD 495



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 27/328 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVVWNVMVSCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--------IEVGRRLHSFILKV 191
           +    +V    RR        D  TF++LL     +          + +G  +H  ++++
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRL 144

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G  L+  V++AL+D+Y KCG V +A RVFD ++ R+ V WN ++ CY  +  G  A  +F
Sbjct: 145 GLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLF 204

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G   D  T +SL++SC  + ++    Q+H   +++     + V  +L+  Y KN
Sbjct: 205 VSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKN 264

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G + +A R F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +L
Sbjct: 265 GFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLSKSAIDLFDRMLQQGIRADGIAFLGVL 324

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFL 399
           S+C            HA  I++G + FL
Sbjct: 325 SACS-----------HAGLIEDGFKYFL 341



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 5/240 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI--SGI 139
           G  +H  +++LGL   + +   +L +Y KC    +  ++FD M +RN V+WN +I   G 
Sbjct: 134 GSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGK 193

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            + G      F  M+      D +T  SLL +C          +LH++ ++ G      V
Sbjct: 194 HDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQV 253

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+  YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M  +G+
Sbjct: 254 GNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLSKSAIDLFDRMLQQGI 313

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           + D   F  ++++C   G  + G + + L++ + + +D        LVD+  + G I DA
Sbjct: 314 RADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDA 372



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A      +  QLH++ ++ GL + L + N ++  Y K     + ++ F  +   ++
Sbjct: 223 LSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDL 282

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTW++++S     G   +    F RML   +R D I F  +L AC  A  IE G + +  
Sbjct: 283 VTWSSMVSSFAYLGLSKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK-YFL 341

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLC 225
           ++   + ++      + LVDL G+ G + DA      + C
Sbjct: 342 LMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSC 381


>gi|354805211|gb|AER41628.1| pentatricopeptide [Oryza nivara]
 gi|354805240|gb|AER41654.1| pentatricopeptide [Oryza rufipogon]
          Length = 520

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/468 (46%), Positives = 307/468 (65%), Gaps = 8/468 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE   RD VLWNVMVSCY+ + L
Sbjct: 28  VHPLSVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK--------LGRQIHGLVIKQSFD 295
                 VF  MR  G  GD FTFS+L++   +  S          LG  +HG+VI+    
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLH 147

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           LDV+VAT+L+DMYAK G + +A RVFD M  +N VSWN ++V +G++  G+EA  L   M
Sbjct: 148 LDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSM 207

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           ++  FCPDE+TLAS+ SSC  ++ + E  Q+HAY ++ G+Q FL + NALI AY K G +
Sbjct: 208 MRHGFCPDELTLASLFSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFV 267

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + FG +  PDLVTW+S++ ++A+ GL+K +I++F++ML   +R D IAFL VLSAC
Sbjct: 268 QEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSAC 327

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GL+ +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D 
Sbjct: 328 SHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDV 387

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
           +GAF+GAC++ G+I  AKWAA +L  L+P  P+NY L+SN YA+   W ++A++R +MR+
Sbjct: 388 IGAFLGACRMRGNIESAKWAASRLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRN 447

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            C +KVPGCSWIEI G + TFVS+D    Q+  M  M+  +  L+E++
Sbjct: 448 MCGNKVPGCSWIEIGGIVQTFVSNDMMLHQSREMQRMMELLVSLVEQD 495



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 27/328 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLSVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--------IEVGRRLHSFILKV 191
           +    +V    RR        D  TF++LL     +          + +G  +H  ++++
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRL 144

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G  L+  V++AL+D+Y KCG V +A RVFD ++ R+ V WN ++ CY  +  G  A  +F
Sbjct: 145 GLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLF 204

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G   D  T +SL +SC  + ++    Q+H   +++     + V  +L+  Y KN
Sbjct: 205 VSMMRHGFCPDELTLASLFSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKN 264

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G + +A R F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +L
Sbjct: 265 GFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVL 324

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFL 399
           S+C            HA  I++G + FL
Sbjct: 325 SACS-----------HAGLIEDGFKYFL 341



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI--SGI 139
           G  +H  +++LGL   + +   +L +Y KC    +  ++FD M +RN V+WN +I   G 
Sbjct: 134 GSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGK 193

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            + G      F  M+      D +T  SL  +C          +LH++ ++ G      V
Sbjct: 194 HDRGKEAFDLFVSMMRHGFCPDELTLASLFSSCADMAAANEATQLHAYTVRRGLQDFLQV 253

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+  YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M  +G+
Sbjct: 254 GNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGI 313

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           + D   F  ++++C   G  + G + + L++ + + +D        LVD+  + G I DA
Sbjct: 314 RADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDA 372



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 16/196 (8%)

Query: 39  KHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           KHDR      +  S +R+     E T +  S +S    ++A      +  QLH++ ++ G
Sbjct: 193 KHDRGKEAFDLFVSMMRHGFCPDELTLA--SLFSSCADMAAA----NEATQLHAYTVRRG 246

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           L + L + N ++  Y K     + ++ F  +   ++VTW++++S     G   +    F 
Sbjct: 247 LQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFD 306

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGK 209
           RML   +R D I F  +L AC  A  IE G + +  ++   + ++      + LVDL G+
Sbjct: 307 RMLQQGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGR 365

Query: 210 CGFVEDARRVFDEVLC 225
            G + DA      + C
Sbjct: 366 AGRIRDAYEFLVNMSC 381


>gi|297606990|ref|NP_001059320.2| Os07g0259400 [Oryza sativa Japonica Group]
 gi|255677648|dbj|BAF21234.2| Os07g0259400 [Oryza sativa Japonica Group]
          Length = 521

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/469 (46%), Positives = 309/469 (65%), Gaps = 9/469 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE   RD VLWNVMVSCY+ + L
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS---------KLGRQIHGLVIKQSF 294
                 VF  MR  G  GD FTFS+L++   +  SS          LG  +HG+VI+   
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIRLGL 147

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            LDV+VAT+L+DMYAK G + +A RVFD M  +N VSWN ++V +G++  G+EA  L   
Sbjct: 148 HLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVS 207

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M++  FCPDE+TLAS+LSSC  ++ + E  Q+HAY ++ G+Q FL + NALI AY K G 
Sbjct: 208 MMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGF 267

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  A + FG +  PDLVTW+S++ ++A+ GL+K +I++F++ML   +R D IAFL VLSA
Sbjct: 268 VQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSA 327

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           CSH GL+ +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D
Sbjct: 328 CSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVD 387

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
            +GAF+GAC++ G+I  AKWAA +L  L+P  P+NY L+SN YA+   W ++A++R +MR
Sbjct: 388 VIGAFLGACRMRGNIESAKWAASRLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMR 447

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           + C +KVPGCSWIEI G + TFVS+D    Q+  M  M+  +  L+E++
Sbjct: 448 NMCGNKVPGCSWIEIGGIVQTFVSNDMMLHQSREMQRMMELLVSLVEQD 496



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 159/329 (48%), Gaps = 28/329 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLL--RA-----CVQADDI--EVGRRLHSFILK 190
           +    +V    RR        D  TF++LL  RA     C    ++   +G  +H  +++
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIR 144

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
           +G  L+  V++AL+D+Y KCG V +A RVFD ++ R+ V WN ++ CY  +  G  A  +
Sbjct: 145 LGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDL 204

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F  M   G   D  T +SL++SC  + ++    Q+H   +++     + V  +L+  Y K
Sbjct: 205 FVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGK 264

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
           NG + +A R F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +
Sbjct: 265 NGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGV 324

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           LS+C            HA  I++G + FL
Sbjct: 325 LSACS-----------HAGLIEDGFKYFL 342



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 5/240 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI--SGI 139
           G  +H  +++LGL   + +   +L +Y KC    +  ++FD M +RN V+WN +I   G 
Sbjct: 135 GSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGK 194

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            + G      F  M+      D +T  SLL +C          +LH++ ++ G      V
Sbjct: 195 HDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQV 254

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+  YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M  +G+
Sbjct: 255 GNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGI 314

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           + D   F  ++++C   G  + G + + L++ + + +D        LVD+  + G I DA
Sbjct: 315 RADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDA 373



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 16/196 (8%)

Query: 39  KHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           KHDR      +  S +R+     E T       +  L   A      +  QLH++ ++ G
Sbjct: 194 KHDRGKEAFDLFVSMMRHGFCPDELT------LASLLSSCADMAAANEATQLHAYTVRRG 247

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           L + L + N ++  Y K     + ++ F  +   ++VTW++++S     G   +    F 
Sbjct: 248 LQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFD 307

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGK 209
           RML   +R D I F  +L AC  A  IE G + +  ++   + ++      + LVDL G+
Sbjct: 308 RMLQQGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGR 366

Query: 210 CGFVEDARRVFDEVLC 225
            G + DA      + C
Sbjct: 367 AGRIRDAYEFLVNMSC 382


>gi|125557892|gb|EAZ03428.1| hypothetical protein OsI_25566 [Oryza sativa Indica Group]
          Length = 519

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/467 (46%), Positives = 308/467 (65%), Gaps = 7/467 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE   RD VLWNVMVSCY+ + L
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVN-----SCGTLGSS--KLGRQIHGLVIKQSFDL 296
                 VF  MR  G  GD FTFS+L++     SC    +    LG  +HG+VI+    L
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSCYDHANLLLVLGSSVHGIVIRLGLHL 147

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV+VAT+L+DMYAK G + +A RVFD M  +N VSWN ++V +G++  G+EA  L   M+
Sbjct: 148 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 207

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +  FCPDE+TLAS+LSSC  ++ + E  Q+HAY ++ G+Q FL + NALI  Y K G + 
Sbjct: 208 RHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMVYGKNGFVQ 267

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + FG +  PDLVTW+S++ ++A+ GL+K +I++F++ML   +R D IAFL VLSACS
Sbjct: 268 EAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACS 327

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GL+ +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D +
Sbjct: 328 HAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVI 387

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GAF+GAC++ G+I  AKWAA +L  L+P  P+NY L+SN YA+   W ++A++R +MR+ 
Sbjct: 388 GAFLGACRMRGNIESAKWAASRLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRNM 447

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           C +KVPGCSWIEI G + TFVS+D    Q+  M  M+  +  L+E++
Sbjct: 448 CGNKVPGCSWIEIGGIVQTFVSNDMMLHQSREMQRMMELLVSLVEQD 494



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 159/327 (48%), Gaps = 26/327 (7%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLL--RACVQADD-----IEVGRRLHSFILKVG 192
           +    +V    RR        D  TF++LL  RA     D     + +G  +H  ++++G
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSCYDHANLLLVLGSSVHGIVIRLG 144

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
             L+  V++AL+D+Y KCG V +A RVFD ++ R+ V WN ++ CY  +  G  A  +F 
Sbjct: 145 LHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFV 204

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M   G   D  T +SL++SC  + ++    Q+H   +++     + V  +L+ +Y KNG
Sbjct: 205 SMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMVYGKNG 264

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            + +A R F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +LS
Sbjct: 265 FVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLS 324

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFL 399
           +C            HA  I++G + FL
Sbjct: 325 ACS-----------HAGLIEDGFKYFL 340



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI- 136
            L  G  +H  +++LGL   + +   +L +Y KC    +  ++FD M +RN V+WN +I 
Sbjct: 129 LLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIV 188

Query: 137 -SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
             G  + G      F  M+      D +T  SLL +C          +LH++ ++ G   
Sbjct: 189 CYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQD 248

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
              V +AL+ +YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M 
Sbjct: 249 FLQVGNALIMVYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRML 308

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGN 313
            +G++ D   F  ++++C   G  + G + + L++ + + +D        LVD+  + G 
Sbjct: 309 QQGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGR 367

Query: 314 IDDA 317
           I DA
Sbjct: 368 IRDA 371



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 39  KHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           KHDR      +  S +R+     E T       +  L   A      +  QLH++ ++ G
Sbjct: 192 KHDRGKEAFDLFVSMMRHGFCPDELT------LASLLSSCADMAAANEATQLHAYTVRRG 245

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           L + L + N ++ VY K     + ++ F  +   ++VTW++++S     G   +    F 
Sbjct: 246 LQDFLQVGNALIMVYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFD 305

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGK 209
           RML   +R D I F  +L AC  A  IE G + +  ++   + ++      + LVDL G+
Sbjct: 306 RMLQQGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGR 364

Query: 210 CGFVEDARRVFDEVLC 225
            G + DA      + C
Sbjct: 365 AGRIRDAYEFLVNMSC 380


>gi|357129081|ref|XP_003566196.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 505

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/458 (47%), Positives = 316/458 (68%), Gaps = 8/458 (1%)

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           R+H  ++K G   +  +++AL D Y K   V+ ARRVFDE   RD+VLWNVM+SCY+   
Sbjct: 26  RIHPLLIKSGHASDARLATALTDAYAKSALVKHARRVFDETPRRDIVLWNVMLSCYSSQG 85

Query: 243 LGDGAIAVFNLM-RLEGMKGDYFTFSSLVNS--CGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           L   + A+F  M R  G+ GD FTFS+L+++    +  S  LG   HGLV++    LD++
Sbjct: 86  LLHHSWALFTSMQRTSGLSGDGFTFSALLSARAPSSACSQHLGLLAHGLVLRLGLHLDLV 145

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-- 357
           VAT+L+DMYAK+G + DA +VFD M  ++ VSWN ++V +G +  G EA+++   ML+  
Sbjct: 146 VATALLDMYAKSGRVTDARQVFDAMLLRSTVSWNAIIVCYGHHAGGSEALQIFVSMLRND 205

Query: 358 -GSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            G  C PDE+TLAS+LSSC +++ + E  Q+HAYA+K G+Q FL + NAL+ AY K G +
Sbjct: 206 DGCCCQPDELTLASLLSSCANMAAAYEATQIHAYALKRGLQGFLQVANALVMAYGKNGFL 265

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A Q F ++  PD+V+W+S++ ++A+ G +K +I VFE+M+   VR D IAFL VLSAC
Sbjct: 266 QQATQTFATLHNPDIVSWSSMVSSFAYLGRAKSAIHVFERMIQQGVRLDGIAFLGVLSAC 325

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GL+ +GL+YF LM+ DY I P  +H+ CL DLLGR G++ +AYD+L ++  +   D 
Sbjct: 326 SHAGLIEDGLKYF-LMMMDYKIDPCPQHFVCLVDLLGRAGMVQDAYDVLINISCQTNIDV 384

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
           +GAF+GACK  G+I LAKWAA++LL LEP++PVNY L+SN YA+   W ++A++R +MR+
Sbjct: 385 IGAFLGACKTRGNIELAKWAADRLLHLEPNEPVNYLLISNAYAATGAWSELAKVRSLMRN 444

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            C  KVPGCSWIEIAG++ TFVS+D    ++  M  M+
Sbjct: 445 MCGKKVPGCSWIEIAGKVQTFVSNDILLQRSTEMREMM 482



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 171/347 (49%), Gaps = 24/347 (6%)

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           V+A    L    ++H  ++K G  +   L   +   Y K        ++FDE   R+IV 
Sbjct: 14  VTAGATALHACARIHPLLIKSGHASDARLATALTDAYAKSALVKHARRVFDETPRRDIVL 73

Query: 132 WNTLIS-----GIINCGGNVTPYFRRMLLDNVRLDHITFNSLL--RACVQADDIEVGRRL 184
           WN ++S     G+++    +    +R     +  D  TF++LL  RA   A    +G   
Sbjct: 74  WNVMLSCYSSQGLLHHSWALFTSMQRT--SGLSGDGFTFSALLSARAPSSACSQHLGLLA 131

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  +L++G  L+  V++AL+D+Y K G V DAR+VFD +L R  V WN ++ CY  +  G
Sbjct: 132 HGLVLRLGLHLDLVVATALLDMYAKSGRVTDARQVFDAMLLRSTVSWNAIIVCYGHHAGG 191

Query: 245 DGAIAVF-NLMRLEG---MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
             A+ +F +++R +     + D  T +SL++SC  + ++    QIH   +K+     + V
Sbjct: 192 SEALQIFVSMLRNDDGCCCQPDELTLASLLSSCANMAAAYEATQIHAYALKRGLQGFLQV 251

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           A +LV  Y KNG +  A + F  +   ++VSW++MV  F   G  + A+ +   M+Q   
Sbjct: 252 ANALVMAYGKNGFLQQATQTFATLHNPDIVSWSSMVSSFAYLGRAKSAIHVFERMIQQGV 311

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
             D +    +LS+C            HA  I++G++ FL + +  I+
Sbjct: 312 RLDGIAFLGVLSACS-----------HAGLIEDGLKYFLMMMDYKID 347



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCG 143
           H  +++LGL   L +   +L +Y K     D  ++FD M +R+ V+WN +I   G    G
Sbjct: 132 HGLVLRLGLHLDLVVATALLDMYAKSGRVTDARQVFDAMLLRSTVSWNAIIVCYGHHAGG 191

Query: 144 GNVTPYFRRMLLDN----VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                 F  ML ++     + D +T  SLL +C          ++H++ LK G      V
Sbjct: 192 SEALQIFVSMLRNDDGCCCQPDELTLASLLSSCANMAAAYEATQIHAYALKRGLQGFLQV 251

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ALV  YGK GF++ A + F  +   D+V W+ MVS +A       AI VF  M  +G+
Sbjct: 252 ANALVMAYGKNGFLQQATQTFATLHNPDIVSWSSMVSSFAYLGRAKSAIHVFERMIQQGV 311

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D   F  ++++C   G  + G +   +++    D        LVD+  + G + DA  
Sbjct: 312 RLDGIAFLGVLSACSHAGLIEDGLKYFLMMMDYKIDPCPQHFVCLVDLLGRAGMVQDAYD 371

Query: 320 VF 321
           V 
Sbjct: 372 VL 373


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/584 (37%), Positives = 343/584 (58%), Gaps = 5/584 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK  +  G +  GK +H+H++K G    + + +  + +Y KC  F+D  KLFDEM 
Sbjct: 301 YPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP 360

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WN +IS     G        F  M +   + D +T  +++ +C +  D+E G+ 
Sbjct: 361 ERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKE 420

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  +++ GF L+ FVSSALVD+YGKCG +E A+ VF+++  +++V WN M++ Y+L   
Sbjct: 421 IHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 480

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               I +F  M  EG++    T SS++ +C    + +LG+ IHG +I+   + D+ V +S
Sbjct: 481 SKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSS 540

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K GNI  A  VF  M   NVVSWN M+ G+ + G   EA+ +  DM +    PD
Sbjct: 541 LIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPD 600

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +T  S+L +C  L++  + +++H + I++ ++    +  AL++ Y+KCG++  AL  F 
Sbjct: 601 AITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFN 660

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E D V+WTS+I AY  HG + E++++FEKM     +PD + FL +LSACSH GLV E
Sbjct: 661 QLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDE 720

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT--LGAFIG 541
           G  YFN MI++Y   P  EHY+CL DLLGRVG L EAY++L   P + R D   L     
Sbjct: 721 GCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTP-DIREDVGLLSTLFS 779

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC +H  + L +     L+E +P  P  Y ++SN+YAS + W +V ++R  +++    K 
Sbjct: 780 ACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN 839

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
           PGCSWIE+   IH FV  D+SHPQA  +Y  +  +   +E+  V
Sbjct: 840 PGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEKYQV 883



 Score =  254 bits (650), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 156/503 (31%), Positives = 269/503 (53%), Gaps = 16/503 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRNIVTWNTLISGII 140
           GK +H  I+ LGL N ++L   ++++Y  C  F   + +F  +    +I  WN L++   
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAA-- 271

Query: 141 NCGGNVT-----PYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            C  N         F R+L    ++ D  T+ S+L+AC     +  G+ +H+ ++K GF 
Sbjct: 272 -CTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFA 330

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           ++  V S+ V +Y KC   EDA ++FDE+  RD+  WN ++SCY  +   + A+ +F  M
Sbjct: 331 MDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM 390

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           ++ G K D  T +++++SC  L   + G++IH  +++  F LD  V+++LVDMY K G +
Sbjct: 391 KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCL 450

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A  VF+ +  KNVVSWN+M+ G+   GD +  ++L R M +    P   TL+SIL +C
Sbjct: 451 EMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 510

Query: 375 GSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            S S++ +  + +H Y I+N V+A + + ++LI+ Y KCG+I  A   F ++ + ++V+W
Sbjct: 511 -SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSW 569

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             +I  Y   G   E++ +F  M    V+PD+I F  VL ACS   ++ +G    N +I 
Sbjct: 570 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII- 628

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           +  +  +      L D+  + G + EA  +   +P E    +  + I A   HG    A 
Sbjct: 629 ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAFEAL 687

Query: 554 WAAEKLLE--LEPSKPVNYALVS 574
              EK+ +   +P K    A++S
Sbjct: 688 KLFEKMQQSDAKPDKVTFLAILS 710



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 121/259 (46%), Gaps = 5/259 (1%)

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVV 330
           + G+     LG+ IH  ++      ++ +  SL+++Y        A  VF  +    ++ 
Sbjct: 204 TAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDIT 263

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAY 389
            WN ++    +N    E +++   +L   +  PD  T  S+L +C  L      + VH +
Sbjct: 264 LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTH 323

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            IK+G    + + ++ +  Y+KC     A++ F  + E D+ +W ++I  Y   G  +++
Sbjct: 324 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 383

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPDSEHYTCLT 508
           +E+FE+M     +PDS+    V+S+C+    +  G   +  L+ S + +  D    + L 
Sbjct: 384 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL--DGFVSSALV 441

Query: 509 DLLGRVGLLVEAYDLLASM 527
           D+ G+ G L  A ++   +
Sbjct: 442 DMYGKCGCLEMAKEVFEQI 460


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/584 (37%), Positives = 343/584 (58%), Gaps = 5/584 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK  +  G +  GK +H+H++K G    + + +  + +Y KC  F+D  KLFDEM 
Sbjct: 109 YPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP 168

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WN +IS     G        F  M +   + D +T  +++ +C +  D+E G+ 
Sbjct: 169 ERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKE 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  +++ GF L+ FVSSALVD+YGKCG +E A+ VF+++  +++V WN M++ Y+L   
Sbjct: 229 IHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 288

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               I +F  M  EG++    T SS++ +C    + +LG+ IHG +I+   + D+ V +S
Sbjct: 289 SKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSS 348

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K GNI  A  VF  M   NVVSWN M+ G+ + G   EA+ +  DM +    PD
Sbjct: 349 LIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPD 408

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +T  S+L +C  L++  + +++H + I++ ++    +  AL++ Y+KCG++  AL  F 
Sbjct: 409 AITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFN 468

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E D V+WTS+I AY  HG + E++++FEKM     +PD + FL +LSACSH GLV E
Sbjct: 469 QLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDE 528

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT--LGAFIG 541
           G  YFN MI++Y   P  EHY+CL DLLGRVG L EAY++L   P + R D   L     
Sbjct: 529 GCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTP-DIREDVGLLSTLFS 587

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC +H  + L +     L+E +P  P  Y ++SN+YAS + W +V ++R  +++    K 
Sbjct: 588 ACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN 647

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
           PGCSWIE+   IH FV  D+SHPQA  +Y  +  +   +E+  V
Sbjct: 648 PGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEKYQV 691



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/515 (31%), Positives = 275/515 (53%), Gaps = 16/515 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRN 128
           LK      +L+QGK +H  I+ LGL N ++L   ++++Y  C  F   + +F  +    +
Sbjct: 10  LKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLD 69

Query: 129 IVTWNTLISGIINCGGNVT-----PYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGR 182
           I  WN L++    C  N         F R+L    ++ D  T+ S+L+AC     +  G+
Sbjct: 70  ITLWNGLMAA---CTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 126

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H+ ++K GF ++  V S+ V +Y KC   EDA ++FDE+  RD+  WN ++SCY  + 
Sbjct: 127 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ +F  M++ G K D  T +++++SC  L   + G++IH  +++  F LD  V++
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVDMY K G ++ A  VF+ +  KNVVSWN+M+ G+   GD +  ++L R M +    P
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306

Query: 363 DEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
              TL+SIL +C S S++ +  + +H Y I+N V+A + + ++LI+ Y KCG+I  A   
Sbjct: 307 TLTTLSSILMAC-SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENV 365

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F ++ + ++V+W  +I  Y   G   E++ +F  M    V+PD+I F  VL ACS   ++
Sbjct: 366 FQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVL 425

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            +G    N +I +  +  +      L D+  + G + EA  +   +P E    +  + I 
Sbjct: 426 EKGKEIHNFII-ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIA 483

Query: 542 ACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVS 574
           A   HG    A    EK+ +   +P K    A++S
Sbjct: 484 AYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS 518



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 195/371 (52%), Gaps = 3/371 (0%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D     SLL+ C+ +  ++ G+ +H  I+ +G   N  +  +L++LY  C   + A+ V
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 220 FDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLG 277
           F  +    D+ LWN +++    N +    + VF+ L+    +K D FT+ S++ +C  LG
Sbjct: 61  FQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLG 120

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
               G+ +H  VIK  F +DV+V +S V MYAK    +DA ++FD M  ++V SWN ++ 
Sbjct: 121 RVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 180

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            + Q+G   +A++L  +M    F PD VTL +++SSC  L      +++H   +++G   
Sbjct: 181 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
              + +AL++ Y KCG +  A + F  ++  ++V+W S+I  Y+  G SK  IE+F +M 
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 300

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              +RP       +L ACS    +  G ++ +  I    +  D    + L DL  + G +
Sbjct: 301 EEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 359

Query: 518 VEAYDLLASMP 528
             A ++  +MP
Sbjct: 360 GSAENVFQNMP 370


>gi|354805138|gb|AER41559.1| pentatricopeptide [Oryza australiensis]
          Length = 510

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/467 (46%), Positives = 300/467 (64%), Gaps = 8/467 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H F +K G   +  V++AL D Y K G V  ARRVFDE   RD VLWNVMVSCY+   L
Sbjct: 29  IHPFAVKSGSRSDARVATALADAYAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGL 88

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK--------LGRQIHGLVIKQSFD 295
                 VF  MR  G  GD FTFS+L++   +  S          LG   HG+VI+    
Sbjct: 89  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLLLGSSAHGIVIRLGLQ 148

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           LDV+VAT+L+DMYAK G + +A  VFD M  +N +SWN ++V +G++G G+EA+++   M
Sbjct: 149 LDVVVATALLDMYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVFVSM 208

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           ++   CPDE+TLAS+LSSC  ++++ E  Q+H+Y +K G+Q FL + NALI AY K G +
Sbjct: 209 MRDGCCPDELTLASLLSSCADMAVANEATQLHSYTVKRGLQDFLQVSNALIMAYGKNGFV 268

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + FG +  PDLVTW+S+I  +A+ GL+K +I +F++ML   ++ D  AFL VLSAC
Sbjct: 269 QEATRTFGMIHNPDLVTWSSMISCFAYLGLAKSAINLFDRMLQQGIQADGTAFLGVLSAC 328

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
            H GLV +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D 
Sbjct: 329 CHAGLVEDGFKYFLLMKRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDV 388

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
           +GAF+ AC++ G+I  AKWAA +L  L+P  P+NY L+SN+YA+   W D+A++R +MR 
Sbjct: 389 IGAFLSACRMRGNIESAKWAASRLFSLKPDDPINYLLISNMYAAAGAWSDLAKVRSVMRS 448

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            C +KVPGCSWIEI G + TFVS+D    Q   M  M+  +  L+E+
Sbjct: 449 MCGNKVPGCSWIEIGGIVQTFVSNDMMLHQLREMQKMMELLVSLVEQ 495



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 154/328 (46%), Gaps = 27/328 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K        ++FDE  +R+ V WN ++S     G+
Sbjct: 29  IHPFAVKSGSRSDARVATALADAYAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGL 88

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--------IEVGRRLHSFILKV 191
           +    +V    RR        D  TF++LL     +          + +G   H  ++++
Sbjct: 89  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSCYDHANLLLLLGSSAHGIVIRL 145

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G  L+  V++AL+D+Y KCG V +A  VFD ++ R+ + WN ++ CY  +  G  A+ VF
Sbjct: 146 GLQLDVVVATALLDMYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVF 205

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M  +G   D  T +SL++SC  +  +    Q+H   +K+     + V+ +L+  Y KN
Sbjct: 206 VSMMRDGCCPDELTLASLLSSCADMAVANEATQLHSYTVKRGLQDFLQVSNALIMAYGKN 265

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G + +A R F  +   ++V+W++M+  F   G  + A+ L   MLQ     D      +L
Sbjct: 266 GFVQEATRTFGMIHNPDLVTWSSMISCFAYLGLAKSAINLFDRMLQQGIQADGTAFLGVL 325

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFL 399
           S+C            HA  +++G + FL
Sbjct: 326 SAC-----------CHAGLVEDGFKYFL 342



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 5/240 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI--SGI 139
           G   H  +++LGL   + +   +L +Y KC    +   +FD M +RN ++WN +I   G 
Sbjct: 135 GSSAHGIVIRLGLQLDVVVATALLDMYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGK 194

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              G      F  M+ D    D +T  SLL +C          +LHS+ +K G      V
Sbjct: 195 HGRGKEALEVFVSMMRDGCCPDELTLASLLSSCADMAVANEATQLHSYTVKRGLQDFLQV 254

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           S+AL+  YGK GFV++A R F  +   DLV W+ M+SC+A   L   AI +F+ M  +G+
Sbjct: 255 SNALIMAYGKNGFVQEATRTFGMIHNPDLVTWSSMISCFAYLGLAKSAINLFDRMLQQGI 314

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           + D   F  ++++C   G  + G + + L++K+ + +D        LVD+  + G I DA
Sbjct: 315 QADGTAFLGVLSACCHAGLVEDGFK-YFLLMKRDYKIDPTPQHLACLVDLLGRAGRIRDA 373



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A      +  QLHS+ +K GL + L + N ++  Y K     +  + F  +   ++
Sbjct: 224 LSSCADMAVANEATQLHSYTVKRGLQDFLQVSNALIMAYGKNGFVQEATRTFGMIHNPDL 283

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTW+++IS    +    +    F RML   ++ D   F  +L AC  A  +E G + +  
Sbjct: 284 VTWSSMISCFAYLGLAKSAINLFDRMLQQGIQADGTAFLGVLSACCHAGLVEDGFK-YFL 342

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLC 225
           ++K  + ++      + LVDL G+ G + DA      + C
Sbjct: 343 LMKRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSC 382


>gi|413942039|gb|AFW74688.1| hypothetical protein ZEAMMB73_905859 [Zea mays]
          Length = 514

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/463 (48%), Positives = 304/463 (65%), Gaps = 13/463 (2%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH   LK G      V++AL   Y + G V  ARRVFDE   RDLVL+N MVSCYA + L
Sbjct: 27  LHPLALKSGRASEARVATALAVAYARWGLVAHARRVFDEAPRRDLVLYNAMVSCYASHGL 86

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVN---------SCGTLGSS---KLGRQIHGLVIK 291
              A A+F   R  G+  D FTFS+L+          + G +      ++G   H LV++
Sbjct: 87  AREAWALFAAARRSGIAPDGFTFSALLRPPPRRGRHPTAGAVDDGLLLRMGALAHSLVLR 146

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                DV+VAT+L+DMYAK G +D+A  VFD M  +NVVSWN +VV +G+ G G++AV+L
Sbjct: 147 LGLLADVVVATALLDMYAKCGRVDEARWVFDAMAVRNVVSWNAIVVCYGRVGGGKDAVEL 206

Query: 352 LRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
            R ML+ GS CPDE+TLAS+LSSC S++ + E  QVHAYAIK G   FL + NA+I AY 
Sbjct: 207 FRWMLRDGSCCPDELTLASVLSSCASVAAANEATQVHAYAIKRGFHRFLQVANAVITAYG 266

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G    A Q F  + +PD+VTW+ ++ + A+ GL K+++ VFE+ML   V+PDS+AFL 
Sbjct: 267 KTGFAREAGQMFAMICDPDVVTWSCMVSSLAYLGLCKDAVHVFERMLQQGVQPDSVAFLG 326

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VLSACSH GLV EGL YF +M   Y+I P+S+H  CL DLLGR G + +AY+++  +  E
Sbjct: 327 VLSACSHAGLVEEGLHYFLMMARGYNIDPNSQHLACLVDLLGRAGRIQDAYNIVIKLSCE 386

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
             +D +GAF+GACK+ G I LAKWAA++LL LEPS+ VNY L+SN +A+   W ++A +R
Sbjct: 387 NNADIVGAFLGACKLRGKIELAKWAADRLLCLEPSEAVNYLLMSNAFAAAGAWNELAEVR 446

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            +MR  C  KVPGCSWIE+ G + TFVS+D    Q++ M  M+
Sbjct: 447 SVMRHRCGSKVPGCSWIEVGGTVQTFVSNDVVLHQSIEMQQMV 489



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 26/338 (7%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G  +  + LH   +K G  ++  +   +   Y +        ++FDE   R++V +N ++
Sbjct: 19  GGARAAQTLHPLALKSGRASEARVATALAVAYARWGLVAHARRVFDEAPRRDLVLYNAMV 78

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACV---------QADD---IEVGR 182
           S   + G        F       +  D  TF++LLR              DD   + +G 
Sbjct: 79  SCYASHGLAREAWALFAAARRSGIAPDGFTFSALLRPPPRRGRHPTAGAVDDGLLLRMGA 138

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
             HS +L++G   +  V++AL+D+Y KCG V++AR VFD +  R++V WN +V CY    
Sbjct: 139 LAHSLVLRLGLLADVVVATALLDMYAKCGRVDEARWVFDAMAVRNVVSWNAIVVCYGRVG 198

Query: 243 LGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            G  A+ +F  M  +G    D  T +S+++SC ++ ++    Q+H   IK+ F   + VA
Sbjct: 199 GGKDAVELFRWMLRDGSCCPDELTLASVLSSCASVAAANEATQVHAYAIKRGFHRFLQVA 258

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +++  Y K G   +A ++F  +   +VV+W+ MV      G  ++AV +   MLQ    
Sbjct: 259 NAVITAYGKTGFAREAGQMFAMICDPDVVTWSCMVSSLAYLGLCKDAVHVFERMLQQGVQ 318

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           PD V    +LS+C            HA  ++ G+  FL
Sbjct: 319 PDSVAFLGVLSACS-----------HAGLVEEGLHYFL 345



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 142/337 (42%), Gaps = 46/337 (13%)

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           M+ D        +S    G ++  + +H L +K     +  VAT+L   YA+ G +  A 
Sbjct: 1   MRHDLVALLLRASSISVSGGARAAQTLHPLALKSGRASEARVATALAVAYARWGLVAHAR 60

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL------- 371
           RVFD    +++V +N MV  +  +G  REA  L     +    PD  T +++L       
Sbjct: 61  RVFDEAPRRDLVLYNAMVSCYASHGLAREAWALFAAARRSGIAPDGFTFSALLRPPPRRG 120

Query: 372 --SSCGSLSISCETRQ---VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
              + G++      R     H+  ++ G+ A + +  AL++ Y+KCG +  A   F ++ 
Sbjct: 121 RHPTAGAVDDGLLLRMGALAHSLVLRLGLLADVVVATALLDMYAKCGRVDEARWVFDAMA 180

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDSIAFLEVLSACS--------- 476
             ++V+W +I+  Y   G  K+++E+F  ML   +  PD +    VLS+C+         
Sbjct: 181 VRNVVSWNAIVVCYGRVGGGKDAVELFRWMLRDGSCCPDELTLASVLSSCASVAAANEAT 240

Query: 477 --HGGLVSEGLRYF----NLMISDYHIL---------------PDSEHYTCLTDLLGRVG 515
             H   +  G   F    N +I+ Y                  PD   ++C+   L  +G
Sbjct: 241 QVHAYAIKRGFHRFLQVANAVITAYGKTGFAREAGQMFAMICDPDVVTWSCMVSSLAYLG 300

Query: 516 L---LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
           L    V  ++ +    ++P S      + AC   G +
Sbjct: 301 LCKDAVHVFERMLQQGVQPDSVAFLGVLSACSHAGLV 337



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A      +  Q+H++ +K G    L + N V+  Y K     +  ++F  +  
Sbjct: 224 ASVLSSCASVAAANEATQVHAYAIKRGFHRFLQVANAVITAYGKTGFAREAGQMFAMICD 283

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++VTW+ ++S +   G   +    F RML   V+ D + F  +L AC  A  +E G  L
Sbjct: 284 PDVVTWSCMVSSLAYLGLCKDAVHVFERMLQQGVQPDSVAFLGVLSACSHAGLVEEG--L 341

Query: 185 HSFILKV-GFGL--NCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           H F++   G+ +  N    + LVDL G+ G ++DA  +  ++ C +
Sbjct: 342 HYFLMMARGYNIDPNSQHLACLVDLLGRAGRIQDAYNIVIKLSCEN 387


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 350/585 (59%), Gaps = 8/585 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ G+++H  I+  G  + + +   +  +Y KC + ++  ++FD M  R++V+WN +I+G
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 139 IINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
               G    PY     F  M ++ ++ +  T  S++  C     +E G+++H + ++ G 
Sbjct: 196 YSQNG---QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGI 252

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             +  V + LV++Y KCG V  A ++F+ +  RD+  WN ++  Y+LN     A+A FN 
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M++ G+K +  T  S++ +C  L + + G+QIHG  I+  F+ + +V  +LV+MYAK GN
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGN 372

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++ A ++F+ M  KNVV+WN ++ G+ Q+G   EA+ L  +M      PD   + S+L +
Sbjct: 373 VNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPA 432

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C       + +Q+H Y I++G ++ + +   L++ Y+KCG++  A + F  + E D+V+W
Sbjct: 433 CAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSW 492

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T++I AY  HG  ++++ +F KM     + D IAF  +L+ACSH GLV +GL+YF  M S
Sbjct: 493 TTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKS 552

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           DY + P  EHY CL DLLGR G L EA  ++ +M +EP ++  GA +GAC++H +I L +
Sbjct: 553 DYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGE 612

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            AA+ L EL+P     Y L+SN+YA  + W DVA+LRKMM++    K PGCS + +  ++
Sbjct: 613 QAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDV 672

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
            TF+  DR+HPQ+  +YAML  ++  M +     + N+  ++++E
Sbjct: 673 QTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEE 717



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 233/434 (53%), Gaps = 13/434 (2%)

Query: 121 FDEMRVRN-IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           F +  +RN  V W   I G +  G        + +M    +  D + F S+++AC    D
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           ++ GR++H  I+  GF  +  V +AL  +Y KCG +E+AR+VFD +  RD+V WN +++ 
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y+ N     A+A+F+ M++ G+K +  T  S++  C  L + + G+QIH   I+   + D
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESD 255

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           VLV   LV+MYAK GN++ A ++F+ M  ++V SWN ++ G+  N    EA+     M  
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV 315

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P+ +T+ S+L +C  L    + +Q+H YAI++G ++   + NAL+N Y+KCG++  
Sbjct: 316 RGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNS 375

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + F  + + ++V W +II  Y+ HG   E++ +F +M +  ++PDS A + VL AC+H
Sbjct: 376 AYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHY----TCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
              + +G +     I  Y I    E      T L D+  + G +  A  L   MP E   
Sbjct: 436 FLALEQGKQ-----IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDV 489

Query: 534 DTLGAFIGACKVHG 547
            +    I A  +HG
Sbjct: 490 VSWTTMILAYGIHG 503


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/656 (36%), Positives = 366/656 (55%), Gaps = 71/656 (10%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK-------CKAFD--- 115
           Y   LK+  +     + K LHSHI+K     +  L N ++  Y K       CK FD   
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 116 ---------------------DMEKLFDEMRVRNIVTWNTLISGIINCG---GNVTPYFR 151
                                +ME LFD M  R+ V+WN+LISG   CG    +V  Y  
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAY-- 129

Query: 152 RMLLDN---VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            ++L N     L+ ITF++LL    +   +++GR++H  ++K GF    FV S LVD+Y 
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 209 K-------------------------------CGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           K                               CG VED++R+F E+  RD + W  M++ 
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           +  N L   AI +F  M+LE ++ D +TF S++ +CG + + + G+Q+H  +I+  +  +
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + VA++LVDMY K  NI  A  VF  MT KNVVSW  M+VG+GQNG   EAVK   DM +
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               PD+ TL S++SSC +L+   E  Q HA A+ +G+ +F+++ NAL+  Y KCGSI  
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIED 429

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           + + F  +   D VTWT+++  YA  G + E+I +FE ML+H ++PD + F+ VLSACS 
Sbjct: 430 SHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSR 489

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV +G + F  MI+++ I+P  +HYTC+ DL  R G + EA + +  MP  P + +  
Sbjct: 490 AGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWA 549

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             + +C+ +G++ + KWAAE L+EL+P    +Y L+S+VYA++  W +VARLRK MRD  
Sbjct: 550 TLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKG 609

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV-FGLMEENNVSGHCNVL 652
             K PGCSWI+   ++H F + D+S+P +  +Y+ L  + + +++E  V    +VL
Sbjct: 610 LRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVL 665


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 354/620 (57%), Gaps = 40/620 (6%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K G L     +  HI +  L +     N +L VY K      M+++F+ M  R+ V+WN 
Sbjct: 52  KLGNLAYAHHVFDHIPQPNLFS----WNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNL 107

Query: 135 LISGIINCGG--NVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            ISG  N G   +    ++ ML D  + L+ ITF+++L  C +   +++GR+++  ILK 
Sbjct: 108 AISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKF 167

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDE------VLC-------------------- 225
           GFG + FV S LVD+Y K G + DA+R FDE      V+C                    
Sbjct: 168 GFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLF 227

Query: 226 -----RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
                RD + W +M++    N L   A+ +F  MRL G   D FTF S++ +CG+L +  
Sbjct: 228 CGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALG 287

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G+QIH  VI+     +V V ++LVDMY+K  +I  A  VF  M  KNV+SW  M+VG+G
Sbjct: 288 EGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYG 347

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QNG   EAVK+  +M +    PD+ TL S++SSC +L+   E  Q H  A+ +G+ +F++
Sbjct: 348 QNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFIT 407

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NALI  Y KCGS   + + F  +   D V+WT+++  YA  G + E+I +FE+ML+H 
Sbjct: 408 VSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHG 467

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD + F+ VLSACS  GLV +GL+YF  MI ++ I+P  +H TC+ DLLGR G L EA
Sbjct: 468 LKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEA 527

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            + + +MP  P        + +C+VHG + + KWAA+ L+ LEP  P +Y L+S++YAS+
Sbjct: 528 RNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASK 587

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV-FGL 639
             W  VA+LR+ MRD    K PG SWI+  G++H F + D+S P    +YA L  + + +
Sbjct: 588 GKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKM 647

Query: 640 MEENNVSGHCNVL-DKEMDE 658
           +EE  V    +VL D E  E
Sbjct: 648 IEEGYVPDMSSVLHDVEESE 667



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 182/386 (47%), Gaps = 63/386 (16%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + SLL+ C ++ +    ++LH  ILK       F+S+ L+  Y K G +  A  VFD + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE--------------------------- 257
             +L  WN ++S Y+   L      +FNLM                              
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 258 -----GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
                 M  +  TFS+++  C       LGRQI+G ++K  F  DV V + LVDMY K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 313 NIDDACRVFDGMTAKNVV-------------------------------SWNTMVVGFGQ 341
            I DA R FD M  +NVV                               SW  M+ G  Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG  REA+ + R+M    F  D+ T  S+L++CGSL    E +Q+HAY I+   +  + +
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            +AL++ YSKC SI  A   F  + + ++++WT+++  Y  +G S+E++++F +M  + V
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV 367

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRY 487
            PD      V+S+C++   + EG ++
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQF 393



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 196/414 (47%), Gaps = 35/414 (8%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L + +KF  +  G+Q++  I+K G  + + + + ++ +Y K     D ++ FDEM 
Sbjct: 141 FSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMP 200

Query: 126 VRNIVTWNTLISGIINCG---------------------------------GNVTPYFRR 152
            RN+V  NT+I+G++ CG                                       FR 
Sbjct: 201 ERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFRE 260

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M L    +D  TF S+L AC     +  G+++H+++++     N FV SALVD+Y KC  
Sbjct: 261 MRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRS 320

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++ A  VF  +  ++++ W  M+  Y  N   + A+ +F  M+  G++ D FT  S+++S
Sbjct: 321 IKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISS 380

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  L S + G Q H   +       + V+ +L+ +Y K G+ +++ R+F  M  ++ VSW
Sbjct: 381 CANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSW 440

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             ++ G+ Q G   E + L   ML     PD VT   +LS+C    +  +  Q     IK
Sbjct: 441 TALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIK 500

Query: 393 -NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +G+   +     +I+   + G +  A     ++   PD+V W +++ +   HG
Sbjct: 501 EHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHG 554



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 175/432 (40%), Gaps = 87/432 (20%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           ++SL+  C    +    +++H L++K     +  ++ +L+  Y K GN+  A  VFD + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 326 AKNVVSWNTM-------------------------------VVGFGQNGDGREAVKLLRD 354
             N+ SWNT+                               + G+   G   +AV++ + 
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 355 MLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK-- 411
           ML+  +   + +T +++L  C         RQ++   +K G  + + + + L++ Y+K  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 412 -----------------------------CGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
                                        CG I  + + F  +KE D ++WT +I     
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +GL +E++++F +M       D   F  VL+AC     + EG +     I  Y I  D +
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQ-----IHAYVIRTDHK 302

Query: 503 HY----TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
                 + L D+  +   +  A  +   MP +         +G    +G  G ++ A + 
Sbjct: 303 DNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVG----YGQNGFSEEAVKI 358

Query: 559 LLELEPS--KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG-CSWIEIAGEIHT 615
             E++ +  +P ++ L S + +      ++A L +  + +C   V G  S+I ++  + T
Sbjct: 359 FFEMQRNGVEPDDFTLGSVISSCA----NLASLEEGAQFHCRALVSGLISFITVSNALIT 414

Query: 616 FV----SSDRSH 623
                 S++ SH
Sbjct: 415 LYGKCGSTENSH 426


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 348/558 (62%), Gaps = 4/558 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +HSHI+  G  + L++   ++ +Y KC ++ D  ++F+++  R+++ WNT+I G
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 420

Query: 139 IINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           +   GGN    +  + +M  + +  + IT+  LL ACV    +  GR +HS ++K GF  
Sbjct: 421 LAE-GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  V +AL+ +Y +CG ++DAR +F++++ +D++ W  M+   A + LG  A+AVF  M+
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G+K +  T++S++N+C +  +   GR+IH  VI+     D  VA +LV+MY+  G++ 
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           DA +VFD MT +++V++N M+ G+  +  G+EA+KL   + +    PD+VT  ++L++C 
Sbjct: 600 DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +       +++H+  +K+G  +  S+ NAL++ Y+KCGS + AL  F  + + ++++W +
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNA 719

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           IIG  A HG  ++ +++FE+M    ++PD + F+ +LSACSH GL+ EG RYF  M  D+
Sbjct: 720 IIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDF 779

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I P  EHY C+ DLLGR G L E   L+ +MP +  +   GA +GAC++HG++ +A+ A
Sbjct: 780 GITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERA 839

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           AE  L+L+P     Y  +S++YA+   W   A+LRK+M      K PG SWIE+  ++H 
Sbjct: 840 AESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHY 899

Query: 616 FVSSDRSHPQAVHMYAML 633
           FV+ DRSHP++  +YA L
Sbjct: 900 FVAEDRSHPESEKIYAEL 917



 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 146/471 (30%), Positives = 264/471 (56%), Gaps = 4/471 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G+++H   MK  L   +++ N +L++Y KC +  +  ++FD+M  +++V+W  +I G
Sbjct: 260 LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGG 319

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             +CG +   +  F++M  + V  + IT+ ++L A      ++ G+ +HS IL  G   +
Sbjct: 320 YADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESD 379

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +ALV +Y KCG  +D R+VF++++ RDL+ WN M+   A     + A  +++ M+ 
Sbjct: 380 LAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EGM  +  T+  L+N+C    +   GR+IH  V+K  F  D+ V  +L+ MYA+ G+I D
Sbjct: 440 EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKD 499

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ M  K+++SW  M+ G  ++G G EA+ + +DM Q    P+ VT  SIL++C S
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            +     R++H   I+ G+     + N L+N YS CGS+  A Q F  + + D+V + ++
Sbjct: 560 PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAM 619

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG YA H L KE++++F+++    ++PD + ++ +L+AC++ G +       +L++ D +
Sbjct: 620 IGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGY 679

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            L D+     L     + G   +A  +   M ++    +  A IG C  HG
Sbjct: 680 -LSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQHG 728



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 236/441 (53%), Gaps = 9/441 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y + LK   +   L  G+++H HI++          N ++++Y++C + ++  ++++++ 
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLN 203

Query: 126 --VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
              R + +WN ++ G +  G         R M    + L   T   LL +C     +E G
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R +H   +K     +  V++ ++++Y KCG + +AR VFD++  + +V W +++  YA  
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A  +F  M+ EG+  +  T+ +++N+     + K G+ +H  ++    + D+ V 
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T+LV MYAK G+  D  +VF+ +  +++++WNTM+ G  + G+  EA ++   M +    
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+++T   +L++C + +     R++H+  +K+G    +S++NALI+ Y++CGSI  A   
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   D+++WT++IG  A  GL  E++ VF+ M    ++P+ + +  +L+ACS    +
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAAL 563

Query: 482 SEGLRYFNLMI-----SDYHI 497
             G R    +I     +D H+
Sbjct: 564 DWGRRIHQQVIEAGLATDAHV 584



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 219/452 (48%), Gaps = 38/452 (8%)

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
           +V  Y ++      R++   +  +L+ C++  D+  GR +H  I++    L+ +  +AL+
Sbjct: 127 DVVQYLQQ---QGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 205 DLYGKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           ++Y +CG +E+AR+V++++    R +  WN MV  Y      + A+ +   M+  G+   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T   L++SC +  + + GR+IH   +K     DV VA  +++MYAK G+I +A  VFD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M  K+VVSW  ++ G+   G    A ++ + M Q    P+ +T  ++L++    +    
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + VH++ +  G ++ L++  AL+  Y+KCGS     Q F  +   DL+ W ++IG  A 
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY---- 487
            G  +E+ E++ +M    + P+ I ++ +L+AC            H  +V +G  +    
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 488 FNLMISDYH---------------ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP---I 529
            N +IS Y                +  D   +T +   L + GL  EA  +   M    +
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           +P   T  + + AC    ++   +   ++++E
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIE 575



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 132/234 (56%), Gaps = 2/234 (0%)

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D A+ V   ++ +G + +   +  ++  C  +     GR++H  +I+    LD     +L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 305 VDMYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           ++MY + G+I++A +V++ +  T + V SWN MVVG+ Q G   EA+KLLR+M Q     
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
              T   +LSSC S S     R++H  A+K  +   +++ N ++N Y+KCGSI  A + F
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             ++   +V+WT IIG YA  G S+ + E+F+KM    V P+ I ++ VL+A S
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 5/154 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L   A  G L+  K++HS ++K G  +  SL N ++  Y KC +F D   +FD+M 
Sbjct: 651 YINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMM 710

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+++WN +I G      G +V   F RM ++ ++ D +TF SLL AC  A  +E GRR
Sbjct: 711 KRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRR 770

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVED 215
               + +  FG+   +     +VDL G+ G +++
Sbjct: 771 YFCSMSR-DFGITPTIEHYGCMVDLLGRAGQLDE 803


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 329/567 (58%), Gaps = 35/567 (6%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDN- 157
           N +L      +   DME LF  M  R+IV++N +I+G    G +   V  Y   +  D+ 
Sbjct: 76  NALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSS 135

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK-------- 209
           VR   IT ++++ A     D  +G++ H  IL++GFG N FV S LVD+Y K        
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 210 -----------------------CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
                                  C  VE+ARR+F+ +  RD + W  MV+ +  N L   
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  MR +G+  D +TF S++ +CG L + + G+QIH  +I+  +D +V V ++LVD
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K  +I  A  VF  MT KN++SW  ++VG+GQNG   EAV++  +M +    PD+ T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S++SSC +L+   E  Q H  A+ +G+  ++++ NAL+  Y KCGSI  A + F  + 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D V+WT+++  YA  G +KE+I++FEKML+  V+PD + F+ VLSACS  G V +G  
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF+ M  D+ I+P  +HYTC+ DL  R G L EA + +  MP+ P +   G  + AC++ 
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G + + KWAAE LLE++P  P +Y L+ +++A++  W +VA+LR+ MRD    K PGCSW
Sbjct: 556 GDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSW 615

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           I+   ++H F + D+SHP +  +Y  L
Sbjct: 616 IKYKNKVHIFSADDQSHPCSKGIYEKL 642



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 193/398 (48%), Gaps = 35/398 (8%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQ H  I++LG      + + ++ +Y K     D ++ FDE+  +N+V +NT+I+G++ 
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218

Query: 142 CG---------------------------------GNVTPYFRRMLLDNVRLDHITFNSL 168
           C                                        FRRM    + +D  TF S+
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L AC     +E G+++H++I++  +  N FV SALVD+Y KC  ++ A  VF  + C+++
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           + W  ++  Y  N   + A+ VF+ M+ +G+  D +T  S+++SC  L S + G Q H L
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCL 398

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
            +       + V+ +LV +Y K G+I+DA R+FD M+  + VSW  +V G+ Q G  +E 
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALIN 407
           + L   ML     PD VT   +LS+C       + R   H+    +G+         +I+
Sbjct: 459 IDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            YS+ G +  A +    +   PD + W +++ A    G
Sbjct: 519 LYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 178/369 (48%), Gaps = 42/369 (11%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLM 254
           N F  +AL+        + D   +F  +  RD+V +N +++ ++       A+ V+  L+
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 255 RLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           + +  ++    T S++V +   LG   LG+Q H  +++  F  +  V + LVDMYAK   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 314 IDDACRVFDGMTAKNVV-------------------------------SWNTMVVGFGQN 342
           + DA R FD + +KNVV                               +W TMV GF QN
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   EA+++ R M       D+ T  SIL++CG+LS   + +Q+HAY I+      + + 
Sbjct: 251 GLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVG 310

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           +AL++ YSKC SI  A   F  +   ++++WT++I  Y  +G S+E++ VF +M    + 
Sbjct: 311 SALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY----TCLTDLLGRVGLLV 518
           PD      V+S+C++   + EG ++  L      ++    HY      L  L G+ G + 
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHCLA-----LVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 519 EAYDLLASM 527
           +A+ L   M
Sbjct: 426 DAHRLFDEM 434



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 135/277 (48%), Gaps = 18/277 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QGKQ+H++I++    + + + + ++ +Y KC++    E +F  M  +NI++W  LI G
Sbjct: 288 LEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVG 347

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                C       F  M  D +  D  T  S++ +C     +E G + H   L  G    
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             VS+ALV LYGKCG +EDA R+FDE+   D V W  +VS YA        I +F  M  
Sbjct: 408 ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLA 467

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQI-------HGLV-IKQSFDLDVLVATSLVDMY 308
           +G+K D  TF  ++++C   G  + GR         HG+V I   +       T ++D+Y
Sbjct: 468 KGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHY-------TCMIDLY 520

Query: 309 AKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGD 344
           +++G + +A      M    + + W T++      GD
Sbjct: 521 SRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGD 557



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 15/194 (7%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L++G Q H   +  GL + +++ N ++ +Y KC + +D  +LFDEM   + V+W 
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 443

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR-LHSF--- 187
            L+SG    G        F +ML   V+ D +TF  +L AC +A  +E GR   HS    
Sbjct: 444 ALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKD 503

Query: 188 --ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCL 243
             I+ +     C     ++DLY + G +++A     ++ +  D + W  ++S C     +
Sbjct: 504 HGIVPIDDHYTC-----MIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDM 558

Query: 244 GDGAIAVFNLMRLE 257
             G  A  NL+ ++
Sbjct: 559 EIGKWAAENLLEID 572



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N L+ AY K G  A A + F ++  P+L T+ +++   A   L  +   +F  M     +
Sbjct: 45  NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASM----TQ 100

Query: 463 PDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILP 499
            D +++  V++  S GG  ++ +R Y  L+ +D  + P
Sbjct: 101 RDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRP 138


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 343/557 (61%), Gaps = 3/557 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QGK++H+ + ++G   ++ +   +L +Y KC + +D  ++FD ++ RN+V+W  +I+G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G       +F +M+   +  + +TF S+L AC     ++ G+++   I++ G+G +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+ +Y KCG ++DA RVF+++  +++V WN M++ Y  +   D A+A F  +  
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+K +  TF+S++N C +  S +LG+ +H L++K   + D+ V+ +LV M+   G++  
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ M  +++VSWNT++ GF Q+G  + A    + M +    PD++T   +L++C S
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                E R++HA   +      + +   LI+ Y+KCGSI  A Q F  + + ++ +WTS+
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG  KE++E+F +M    V+PD I F+  LSAC+H GL+ EGL +F  M  +++
Sbjct: 688 IAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFN 746

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHY C+ DL GR GLL EA + +  M +EP S   GA +GAC+VH ++ LA+ AA
Sbjct: 747 IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAA 806

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +K LEL+P+    + ++SN+YA+   W +VA++RK+M D    K PG SWIE+ G++HTF
Sbjct: 807 QKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTF 866

Query: 617 VSSDRSHPQAVHMYAML 633
            S D++HPQ   ++A L
Sbjct: 867 YSDDKTHPQTEEIHAEL 883



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 264/495 (53%), Gaps = 8/495 (1%)

Query: 41  DRSVLSSQLRNSGTIHESTHSAH-----SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC 95
           +R   + Q   +  + E   S+H       YS  L++  KF  L  G+++++HI K G+ 
Sbjct: 83  NRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQ 142

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRM 153
             + ++N ++++Y KC      +++FD+MR +++ +WN L+ G +  G          +M
Sbjct: 143 PDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQM 202

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           + D+V+ D  TF S+L AC  A +++ GR L++ ILK G+  + FV +AL++++ KCG +
Sbjct: 203 VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDI 262

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
            DA +VFD +  RDLV W  M++  A +     A  +F  M  EG++ D   F SL+ +C
Sbjct: 263 GDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
               + + G+++H  + +  +D ++ V T+++ MY K G+++DA  VFD +  +NVVSW 
Sbjct: 323 NHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWT 382

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
            M+ GF Q+G   EA      M++    P+ VT  SIL +C S S     +Q+  + I+ 
Sbjct: 383 AMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEA 442

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G  +   +  AL++ Y+KCGS+  A + F  + + ++V W ++I AY  H     ++  F
Sbjct: 443 GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATF 502

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           + +L   ++P+S  F  +L+ C     +  G ++ + +I    +  D      L  +   
Sbjct: 503 QALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVN 561

Query: 514 VGLLVEAYDLLASMP 528
            G L+ A +L   MP
Sbjct: 562 CGDLMSAKNLFNDMP 576



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 153/290 (52%), Gaps = 10/290 (3%)

Query: 32  TTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           T     +++D ++ + Q      + E      S ++  L V      L+ GK +H  IMK
Sbjct: 487 TAYVQHEQYDNALATFQ----ALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--Y 149
            GL + L + N ++ ++V C      + LF++M  R++V+WNT+I+G +  G N     Y
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F+ M    ++ D ITF  LL AC   + +  GRRLH+ I +  F  +  V + L+ +Y K
Sbjct: 603 FKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTK 662

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG +EDA +VF ++  +++  W  M++ YA +  G  A+ +F  M+ EG+K D+ TF   
Sbjct: 663 CGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGA 722

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           +++C   G  + G  +H     + F+++  +     +VD++ + G +++A
Sbjct: 723 LSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEA 770


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 343/557 (61%), Gaps = 3/557 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QGK++H+ + ++G   ++ +   +L +Y KC + +D  ++FD ++ RN+V+W  +I+G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G       +F +M+   +  + +TF S+L AC     ++ G+++   I++ G+G +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+ +Y KCG ++DA RVF+++  +++V WN M++ Y  +   D A+A F  +  
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+K +  TF+S++N C +  S +LG+ +H L++K   + D+ V+ +LV M+   G++  
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ M  +++VSWNT++ GF Q+G  + A    + M +    PD++T   +L++C S
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                E R++HA   +      + +   LI+ Y+KCGSI  A Q F  + + ++ +WTS+
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG  KE++E+F +M    V+PD I F+  LSAC+H GL+ EGL +F  M  +++
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFN 746

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHY C+ DL GR GLL EA + +  M +EP S   GA +GAC+VH ++ LA+ AA
Sbjct: 747 IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAA 806

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +K LEL+P+    + ++SN+YA+   W +VA++RK+M D    K PG SWIE+ G++HTF
Sbjct: 807 QKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTF 866

Query: 617 VSSDRSHPQAVHMYAML 633
            S D++HPQ   ++A L
Sbjct: 867 YSDDKTHPQTEEIHAEL 883



 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 263/495 (53%), Gaps = 8/495 (1%)

Query: 41  DRSVLSSQLRNSGTIHESTHSAH-----SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC 95
           +R   + Q   +  + E   S+H       YS  L++  KF  L  G+++++HI K G+ 
Sbjct: 83  NRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQ 142

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRM 153
             + + N ++++Y KC      +++FD+MR +++ +WN L+ G +  G          +M
Sbjct: 143 PDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQM 202

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           + D+V+ D  TF S+L AC  A +++ GR L++ ILK G+  + FV +AL++++ KCG +
Sbjct: 203 VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDI 262

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
            DA +VFD +  RDLV W  M++  A +     A  +F  M  EG++ D   F SL+ +C
Sbjct: 263 GDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
               + + G+++H  + +  +D ++ V T+++ MY K G+++DA  VFD +  +NVVSW 
Sbjct: 323 NHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWT 382

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
            M+ GF Q+G   EA      M++    P+ VT  SIL +C S S     +Q+  + I+ 
Sbjct: 383 AMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEA 442

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G  +   +  AL++ Y+KCGS+  A + F  + + ++V W ++I AY  H     ++  F
Sbjct: 443 GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATF 502

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           + +L   ++P+S  F  +L+ C     +  G ++ + +I    +  D      L  +   
Sbjct: 503 QALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVN 561

Query: 514 VGLLVEAYDLLASMP 528
            G L+ A +L   MP
Sbjct: 562 CGDLMSAKNLFNDMP 576



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 153/290 (52%), Gaps = 10/290 (3%)

Query: 32  TTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           T     +++D ++ + Q      + E      S ++  L V      L+ GK +H  IMK
Sbjct: 487 TAYVQHEQYDNALATFQ----ALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--Y 149
            GL + L + N ++ ++V C      + LF++M  R++V+WNT+I+G +  G N     Y
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F+ M    ++ D ITF  LL AC   + +  GRRLH+ I +  F  +  V + L+ +Y K
Sbjct: 603 FKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTK 662

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG +EDA +VF ++  +++  W  M++ YA +  G  A+ +F  M+ EG+K D+ TF   
Sbjct: 663 CGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGA 722

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           +++C   G  + G  +H     + F+++  +     +VD++ + G +++A
Sbjct: 723 LSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEA 770


>gi|354805179|gb|AER41598.1| pentatricopeptide [Oryza glaberrima]
          Length = 544

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/432 (46%), Positives = 285/432 (65%), Gaps = 8/432 (1%)

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE   RD VLWNVMVSCY+ + L      VF  MR  G  GD FTFS+L++   +  S 
Sbjct: 88  FDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSC 147

Query: 280 K--------LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
                    LG  +HG+VI+    LDV+VAT+L+DMYAK G + +A RVFD M  +N VS
Sbjct: 148 YDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVS 207

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN ++V +G++  G+EA  L   M++  FCPDE+TLAS+LSSC  ++ + E  Q+HAY +
Sbjct: 208 WNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTV 267

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           + G+Q FL + NALI AY K G +  A + FG +  PDLVTW+S++ ++A+ GL+K +I+
Sbjct: 268 RRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAID 327

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F++ML   +R D IAFL V SACSH GL+ +G +YF LM  DY I P  +H  CL DLL
Sbjct: 328 LFDRMLQQGIRADGIAFLGVFSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 387

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G + +AY+ L +M  +   D +GAF+GAC++ G+I  AKWAA +L  L+P  P+NY 
Sbjct: 388 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAASRLFSLKPDDPINYL 447

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           L+SN YA+   W ++A++R +MR+ C +KVPGCSWIEI G + TFVS+D    Q+  M  
Sbjct: 448 LISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTFVSNDMMLHQSREMQR 507

Query: 632 MLCTVFGLMEEN 643
           M+  +  L+E++
Sbjct: 508 MMELLVSLVEQD 519



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 142/292 (48%), Gaps = 27/292 (9%)

Query: 121 FDEMRVRNIVTWNTLIS-----GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           FDE  +R+ V WN ++S     G++    +V    RR        D  TF++LL     +
Sbjct: 88  FDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPG---DGFTFSALLSVRASS 144

Query: 176 DD--------IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
                     + +G  +H  ++++G  L+  V++AL+D+Y KCG V +A RVFD ++ R+
Sbjct: 145 SSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRN 204

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            V WN ++ CY  +  G  A  +F  M   G   D  T +SL++SC  + ++    Q+H 
Sbjct: 205 TVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHA 264

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
             +++     + V  +L+  Y KNG + +A R F  +   ++V+W++MV  F   G  + 
Sbjct: 265 YTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKS 324

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           A+ L   MLQ     D +    + S+C            HA  I++G + FL
Sbjct: 325 AIDLFDRMLQQGIRADGIAFLGVFSACS-----------HAGLIEDGFKYFL 365



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI--SGI 139
           G  +H  +++LGL   + +   +L +Y KC    +  ++FD M +RN V+WN +I   G 
Sbjct: 158 GSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGK 217

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            + G      F  M+      D +T  SLL +C          +LH++ ++ G      V
Sbjct: 218 HDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQV 277

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+  YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M  +G+
Sbjct: 278 GNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGI 337

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
           + D   F  + ++C   G  + G + + L++ + + +D        LVD+  + G I DA
Sbjct: 338 RADGIAFLGVFSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDA 396



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 16/196 (8%)

Query: 39  KHDR-----SVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           KHDR      +  S +R+     E T       +  L   A      +  QLH++ ++ G
Sbjct: 217 KHDRGKEAFDLFVSMMRHGFCPDELT------LASLLSSCADMAAANEATQLHAYTVRRG 270

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           L + L + N ++  Y K     + ++ F  +   ++VTW++++S     G   +    F 
Sbjct: 271 LQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFD 330

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGK 209
           RML   +R D I F  +  AC  A  IE G + +  ++   + ++      + LVDL G+
Sbjct: 331 RMLQQGIRADGIAFLGVFSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGR 389

Query: 210 CGFVEDARRVFDEVLC 225
            G + DA      + C
Sbjct: 390 AGRIRDAYEFLVNMSC 405


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/587 (38%), Positives = 342/587 (58%), Gaps = 37/587 (6%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT---PYFRRMLLDNV 158
           N +L  Y K      M+++F  M  R+ V+WN+LISG + C G+V      +  M+ D V
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYV-CYGSVVEAVKTYNSMMKDGV 133

Query: 159 -RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
             L+ ITF+++L        +++GR++H  I+K GFG   FV S+LVD+Y K G V  A 
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 218 RVFDEVLCRDLVL-------------------------------WNVMVSCYALNCLGDG 246
           +VFDEV  R++V+                               W  M++    N L   
Sbjct: 194 QVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  MR EGM  D +TF S++ +CG L + K G++IH L+I+  ++ +V V ++LVD
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVD 313

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K  ++  A  VF  M  KNVVSW  M+VG+GQNG   EAV++  DM +    PD+ T
Sbjct: 314 MYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFT 373

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S++SSC +L+   E  Q H  A+ +G+ +F+++ NALI  Y KCGSI  + Q F  + 
Sbjct: 374 LGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D V+WT+++  YA  G + E+I++FE+ML   ++PD++ F+ VLSACS  GLV  G +
Sbjct: 434 FRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQ 493

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF  M+ D+ I+P S+HYTC+ DL GR G L EA + +  MP  P S      + +C+++
Sbjct: 494 YFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLY 553

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G+  + KWAAE LLEL+P  P  Y L+S++YA++  W +VA+LR+ MR+    K PG SW
Sbjct: 554 GNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSW 613

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTV-FGLMEENNVSGHCNVL 652
           I+   +++ F + D+S P +  +YA L  +   ++EE  V    +VL
Sbjct: 614 IKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVL 660



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 201/416 (48%), Gaps = 36/416 (8%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +F +  L VS++ G +  G+Q+H  I+K G    + + + ++ +Y K        ++FDE
Sbjct: 140 TFSTMLLLVSSQ-GCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDE 198

Query: 124 MRVRNIVTWNTLISGIINCG---------------------------------GNVTPYF 150
           ++ RN+V +NT+I+G++  G                                       F
Sbjct: 199 VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLF 258

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           R M  + + +D  TF S+L AC     ++ G+ +H+ I++ G+  N FV SALVD+Y KC
Sbjct: 259 RDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKC 318

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
             V  A  VF  +  +++V W  M+  Y  N   + A+ VF  M+  G++ D FT  S++
Sbjct: 319 RSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVI 378

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
           +SC  L S + G Q H   +       + V+ +L+ +Y K G+I+D+ ++FD M+ ++ V
Sbjct: 379 SSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEV 438

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SW  +V G+ Q G   E + L   ML     PD VT  ++LS+C    +    +Q     
Sbjct: 439 SWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESM 498

Query: 391 IKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           +K+ G+  F      +I+ + + G +  A      +   PD + W +++ +   +G
Sbjct: 499 LKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYG 554



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 210/488 (43%), Gaps = 96/488 (19%)

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
           + C +  +    ++LH  I+K       F+ + L++ Y K G +  AR VFD++   +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 230 LWNVMVSCYA----------------------LNCLGDG---------AIAVFNLMRLEG 258
            WN M+S Y+                       N L  G         A+  +N M  +G
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 259 -MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK------- 310
            +  +  TFS+++    + G   LGRQIHG ++K  F   V V +SLVDMYAK       
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 311 ------------------------NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
                                   +G + D+ R+F GM  ++ +SW TM+ G  QNG   
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA+ L RDM Q     D+ T  S+L++CG L    E +++H   I++G    + + +AL+
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALV 312

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KC S+  A   F  +   ++V+WT+++  Y  +G S+E++ VF  M  + + PD  
Sbjct: 313 DMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372

Query: 467 AFLEVLSACSHGGLVSEGLRYF---------------NLMIS---------------DYH 496
               V+S+C++   + EG ++                N +I+               D  
Sbjct: 373 TLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEM 432

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE---PRSDTLGAFIGACKVHGSIGLAK 553
              D   +T L     + G   E  DL   M ++   P + T  A + AC   G +   +
Sbjct: 433 SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492

Query: 554 WAAEKLLE 561
              E +L+
Sbjct: 493 QYFESMLK 500


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 355/640 (55%), Gaps = 40/640 (6%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I   T+     Y+  +    K G L+  + +  HI +  L +     N +L  Y K    
Sbjct: 32  IRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFS----WNTLLSAYSKLGYL 87

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD-NVRLDHITFNSLLRA 171
            DM+++FD M   ++V+WN+L+SG    G        +  ML D +V L+ ITF+++L  
Sbjct: 88  QDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLIL 147

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
                 +++GR++H  I K G+    FV S LVD+Y K GF+ DA R+F+E+  +++V++
Sbjct: 148 SSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVY 207

Query: 232 NVMVS----CYAL---------------------------NCLGDGAIAVFNLMRLEGMK 260
           N M++    C  +                           N L   A+  F  M +EG  
Sbjct: 208 NTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFC 267

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D FTF S++ +CG   +   G+QIH  +I+  +  ++ V ++L+DMY K  N+  A  V
Sbjct: 268 MDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAV 327

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F  M  KNV+SW  M+VG+GQNG   EAV++  DM +    PD+ TL S++SSC +L+  
Sbjct: 328 FRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASL 387

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            E  Q H  A+ +G+  F+++ NALI  Y KCGS+  A Q F  +K  D V+WT+++  Y
Sbjct: 388 EEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGY 447

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A  G + E+I +FE ML+H + PD + F+ VLSACS  GLV +G  YF  M+ ++ I P 
Sbjct: 448 AQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPI 507

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            +HYTC+ DLL R G L EA + +  MP  P +      + +C+++G++ + KWAAE L 
Sbjct: 508 PDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLH 567

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           +LEP  P +Y L+S++YA++  W DVA+LRK MR+    K PG SWI+   ++H F + D
Sbjct: 568 KLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADD 627

Query: 621 RSHPQAVHMYAMLCTVF-GLMEENNVSGHCNVL-DKEMDE 658
           RS P +  +YA L +++  ++EE  V     VL D E  E
Sbjct: 628 RSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSE 667



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 205/429 (47%), Gaps = 64/429 (14%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR------- 217
           + + L+ C +A +    ++LH  I++       F+ + L++ YGK G +++AR       
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 218 ------------------------RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                                   RVFD +   D+V WN ++S YA N L   ++ V+N+
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 254 MRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
           M  +G +  +  TFS+++      G   LGRQIHG + K  +   + V + LVDMYAK G
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 313 NIDDACRVFDGMTAKNVV-------------------------------SWNTMVVGFGQ 341
            I+DA R+F+ +  KN+V                               SW T++ G  Q
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQ 247

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG  +EAV   ++M    FC D+ T  S+L++CG      E +Q+HAY I+   Q  + +
Sbjct: 248 NGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFV 307

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            +AL++ Y KC ++  A   F  ++  ++++WT+++  Y  +G S+E++ +F  M  + +
Sbjct: 308 GSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEI 367

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD      V+S+C++   + EG ++    ++   I   +     +T L G+ G L  A+
Sbjct: 368 HPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALIT-LYGKCGSLEHAH 426

Query: 522 DLLASMPIE 530
            L   M I 
Sbjct: 427 QLFHEMKIR 435


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 348/600 (58%), Gaps = 10/600 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD--EMRVR 127
           L+V +  G +Q G+ +H  ++K G    + +   ++ +Y KCK   + E LF   E   +
Sbjct: 169 LRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRK 228

Query: 128 NIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N V W  +++G    G       +FR M    V  +  TF ++L AC        G ++H
Sbjct: 229 NHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVH 288

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            FI+K GFG N +V SALVD+Y KCG +++A+ + + +   D+V WN ++  +  + L +
Sbjct: 289 GFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEE 348

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  M    MK D +TF S++N C  +GS    + +HGL+IK  F+   LV+ +LV
Sbjct: 349 EALRLFKNMHGRNMKIDDYTFPSVLNCC-VVGSIN-PKSVHGLIIKTGFENYKLVSNALV 406

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMYAK G++D A  VF+ M  K+V+SW ++V G+ QN    E++K+  DM      PD+ 
Sbjct: 407 DMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQF 466

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            +ASILS+C  L++    +QVH   IK+G++   S+ N+L+  Y+KCG +  A   F S+
Sbjct: 467 IVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM 526

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +  D++TWT+II  YA +G  + S++ ++ M+S   RPD I F+ +L ACSH GLV EG 
Sbjct: 527 QVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGR 586

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           +YF  M   Y I P  EHY C+ DL GR G L EA  LL  M ++P +    + + AC+V
Sbjct: 587 KYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRV 646

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H ++ LA+ AA  L ELEP   + Y ++SN+Y++ R W DVA++RK+M+     K PGCS
Sbjct: 647 HENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCS 706

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTL 661
           W+EI   ++TF+S DR HP+   +Y  +  +   ++E     ++S   + +DKE  E  L
Sbjct: 707 WLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGL 766



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/512 (29%), Positives = 247/512 (48%), Gaps = 70/512 (13%)

Query: 54  TIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +IH +T             +A +  + Q  Q         L N+LS   QV         
Sbjct: 53  SIHTTT-------------AASYESIYQTNQ---------LLNQLSKSGQV--------- 81

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP------------------------- 148
            +D  KLFD+M  ++  +WNT+IS  +N G  V                           
Sbjct: 82  -NDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKF 140

Query: 149 --------YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                    FR M L+  +    T  S+LR C     I+ G  +H F++K GF  N FV 
Sbjct: 141 GCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVV 200

Query: 201 SALVDLYGKCGFVEDARRVFD--EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           + LVD+Y KC  V +A  +F   E   ++ VLW  MV+ YA N  G  A+  F  M  +G
Sbjct: 201 TGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQG 260

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++ + +TF +++ +C ++ +   G Q+HG ++K  F  +V V ++LVDMYAK G++ +A 
Sbjct: 261 VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAK 320

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            + + M   +VVSWN+++VGF ++G   EA++L ++M   +   D+ T  S+L+ C   S
Sbjct: 321 NMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGS 380

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           I+   + VH   IK G + +  + NAL++ Y+K G +  A   F  + E D+++WTS++ 
Sbjct: 381 IN--PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVT 438

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            YA +   +ES+++F  M    V PD      +LSAC+   L+  G +  +L      + 
Sbjct: 439 GYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFG-KQVHLDFIKSGLR 497

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
                Y  L  +  + G L +A  +  SM ++
Sbjct: 498 WSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK 529


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 326/567 (57%), Gaps = 35/567 (6%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLL--DN 157
           N +L      +  DDM+ LF  M  R+ V++N +I+G    G +      +  +L    +
Sbjct: 76  NALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSS 135

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           VR   IT ++++ A     D  +GR+ H  IL++GFG+N FV S LV +Y K G + DA+
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195

Query: 218 RVFDE----------------VLC---------------RDLVLWNVMVSCYALNCLGDG 246
           RVFDE                + C               RD + W  MV+ +  N L   
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQ 255

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+  F  MR +G+  D +TF S++ +CG L + + G+QIH  +I+  +D +V V ++LVD
Sbjct: 256 ALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVD 315

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K  +I  A   F  M+ KN++SW  ++VG+GQNG   EAV++  +M +    PD+ T
Sbjct: 316 MYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFT 375

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S++SSC +L+   E  Q H  A+ +G+  ++++ NAL+  Y KCGSI  A + F  + 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEML 435

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D V+WT+++  YA  G +KE+I++FEKML+  V+PD + F+ VLSACS  G V +G  
Sbjct: 436 FHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCS 495

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF+ M  D+ I+P  +HYTC+ DL  R G L EA + +  MP+ P +   G  + AC++ 
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G + + +WAAE LLE++P  P +Y L+ +++A++  W  VA+LR+ MRD    K PGCSW
Sbjct: 556 GDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSW 615

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           I+   ++H F + D+SHP +  +Y  L
Sbjct: 616 IKYKNKVHIFSADDQSHPFSKGIYEKL 642



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 18/277 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QGKQ+H++I++    + + + + ++ +Y KC++    E  F  M  +NI++W  LI G
Sbjct: 288 LEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG 347

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                C       F  M  D +  D  T  S++ +C     +E G + H   L  G    
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             VS+ALV LYGKCG +EDA R+FDE+L  D V W  +V+ YA        I +F  M  
Sbjct: 408 ITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLA 467

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLG-------RQIHGLV-IKQSFDLDVLVATSLVDMY 308
           + +K D  TF  ++++C   G  + G       ++ HG+V I   +       T ++D+Y
Sbjct: 468 KDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHY-------TCMIDLY 520

Query: 309 AKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGD 344
           +++G + +A      M    + + W T++      GD
Sbjct: 521 SRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGD 557



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L++G Q H   +  GL + +++ N ++ +Y KC + +D  +LFDEM   + V+W 
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWT 443

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHSFILK 190
            L++G    G        F +ML  +V+ D +TF  +L AC +A  +E G    HS    
Sbjct: 444 ALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKD 503

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCLGDGAI 248
            G        + ++DLY + G +++A     ++ +  D + W  ++S C     +  G  
Sbjct: 504 HGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQW 563

Query: 249 AVFNLMRLE 257
           A  NL+ ++
Sbjct: 564 AAENLLEID 572



 Score = 39.3 bits (90), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N L+ AY K G  A A + F +   P+L T+ +++   A   L  +   +F  M     +
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASM----AQ 100

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            D++++  V++  S GG  +  +R ++ ++
Sbjct: 101 RDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 339/557 (60%), Gaps = 3/557 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QGK++H+ + ++GL  ++ +   +L +Y KC + +D  ++F+ ++ RN+V+W  +I+G
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G       +F +M+   +  + +TF S+L AC +   ++ GR++H  I+K G+  +
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+ +Y KCG + DAR VF+ +  +++V WN M++ Y  +   D A+A F  +  
Sbjct: 442 DRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+K D  TF+S++N C +  + +LG+ +  L+I+  F+ D+ +  +LV M+   G++  
Sbjct: 502 EGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMS 561

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ M  +++VSWNT++ GF Q+G+ + A    + M +    PD++T   +L++C S
Sbjct: 562 AMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACAS 621

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                E R++HA   +  +   + +   LI+ Y+KCGSI  A   F ++ + ++ +WTS+
Sbjct: 622 PEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSM 681

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG  KE++E+F +M    V+PD I F+  LSAC+H GL+ EGL +F  M  D++
Sbjct: 682 ITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFN 740

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHY C+ DL GR GLL EA + +  M ++P S   GA +GAC+VH  + LA+  A
Sbjct: 741 IEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVA 800

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +K LEL+P+    Y ++SN+YA+   W +V ++RK+M D    K PG SWIE+ G +H F
Sbjct: 801 QKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIF 860

Query: 617 VSSDRSHPQAVHMYAML 633
            S D++HPQ   ++A L
Sbjct: 861 CSDDKTHPQIEEIHAEL 877



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 261/517 (50%), Gaps = 24/517 (4%)

Query: 29  NQTTTITNAQKHD----RSVLSSQLRNSGTIHESTHSAH-----SFYSQALKVSAKFGFL 79
           N+   I N Q+ +    R   + QL  +  +  S  S H       YS  L++  K   L
Sbjct: 61  NEFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNL 120

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
             G+++H+HI    +   + + N ++ +Y KC   +  +++FDEM  +++ +WN L+ G 
Sbjct: 121 GDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGY 180

Query: 140 INCGGNVTPYFR---RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +         FR   +M+ D V+ D  TF  +L AC  A +++ G  L S IL  G+  +
Sbjct: 181 VQ-HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTD 239

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV +AL++++ KCG V+DA +VF+ +  RDL+ W  M++  A +     A  +F +M  
Sbjct: 240 LFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEE 299

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG++ D   F SL+ +C    + + G+++H  + +   D ++ V T+L+ MY K G+++D
Sbjct: 300 EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMED 359

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF+ +  +NVVSW  M+ GF Q+G   EA      M++    P+ VT  SIL +C  
Sbjct: 360 ALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSR 419

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            S   + RQ+H   IK G      +  AL++ Y+KCGS+  A   F  + + ++V W ++
Sbjct: 420 PSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAM 479

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI---- 492
           I AY  H     ++  F+ +L   ++PDS  F  +L+ C     +  G    +L+I    
Sbjct: 480 ITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGF 539

Query: 493 -SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            SD HI         L  +    G L+ A +L   MP
Sbjct: 540 ESDLHI------RNALVSMFVNCGDLMSAMNLFNDMP 570



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 10/300 (3%)

Query: 32  TTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           T     +K+D +V + Q      + E      S ++  L V      L+ GK + S I++
Sbjct: 481 TAYVQHEKYDNAVATFQ----ALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR 536

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPY 149
            G  + L ++N ++ ++V C        LF++M  R++V+WNT+I+G +  G N     Y
Sbjct: 537 AGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDY 596

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F+ M    V+ D ITF  LL AC   + +  GRRLH+ I +     +  V + L+ +Y K
Sbjct: 597 FKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTK 656

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG ++DA  VF  +  +++  W  M++ YA +  G  A+ +F  M+ EG+K D+ TF   
Sbjct: 657 CGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGA 716

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAK 327
           +++C   G  K G  +H     + F+++  +     +VD++ + G + +A    + M  K
Sbjct: 717 LSACAHAGLIKEG--LHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVK 774


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 332/567 (58%), Gaps = 2/567 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L V A    +  G QLH  ++  GL     + N +L +Y KC    D  +LFD M 
Sbjct: 251 FACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP 310

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++VTWN +ISG +  G     +  F  M+   ++ D ITF+S L    +   +  G+ 
Sbjct: 311 KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKE 370

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +I++ G  L+ F+ SAL+D+Y KC  VE AR++FD+    D+V+   M+S Y LN +
Sbjct: 371 IHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGM 430

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F  +  E M+ +  T +S++ +C  L +  LG+++HG ++K        V ++
Sbjct: 431 NNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSA 490

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMYAK G +D A + F G++ K+ V WN+M+    QNG   EA+ L R M       D
Sbjct: 491 IMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYD 550

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V++++ LS+C +L      +++HA+ ++   ++ L  E+ALI+ YSKCG++  A + F 
Sbjct: 551 CVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFD 610

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           +++E + V+W SII AY  HG  K+S+ +F  ML   ++PD + FL ++SAC H G V E
Sbjct: 611 TMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDE 670

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ YF  M  +  I+   EHY C+ DL GR G L EA+ ++ SMP  P +   G  +GAC
Sbjct: 671 GIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGAC 730

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++HG++ LA+ A+  L +L+P     Y L+SNV+A+   W  V ++R +M++    KVPG
Sbjct: 731 RLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPG 790

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           CSWI++    H FV++DRSHPQ+  +Y
Sbjct: 791 CSWIDVNNTTHMFVAADRSHPQSSQIY 817



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 217/400 (54%), Gaps = 2/400 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG+Q H+ ++  G+     L  ++L +YV C AF D + +F ++R+     WN +I G
Sbjct: 62  LSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRG 121

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G       ++ +ML      D  TF  +++AC   + + +GR +H  I  +GF L+
Sbjct: 122 FTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELD 181

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+L+  Y + G + DAR +FD +  +D VLWNVM++ Y  N   D A  VF  MR 
Sbjct: 182 VFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
                +  TF+ +++ C +      G Q+HGLV+    ++D  VA +L+ MYAK G++ D
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFD 301

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A R+FD M   ++V+WN M+ G+ QNG   EA  L  +M+     PD +T +S L     
Sbjct: 302 ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSE 361

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            +   + +++H Y I+NGV   + +++ALI+ Y KC  +  A + F      D+V  T++
Sbjct: 362 GATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAM 421

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           I  Y  +G++  ++E+F  +L   +R +S+    VL AC+
Sbjct: 422 ISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 213/414 (51%), Gaps = 2/414 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +K       +  G+ +H  I  +G    + + + ++  Y +     D   LFD M 
Sbjct: 150 FPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V WN +++G +  G   N T  F  M       + +TF  +L  C     I  G +
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ 269

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  ++  G  ++  V++ L+ +Y KCG + DARR+FD +   DLV WN M+S Y  N  
Sbjct: 270 LHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGF 329

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D A  +F+ M    MK D  TFSS +       + + G++IH  +I+    LDV + ++
Sbjct: 330 MDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSA 389

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K  +++ A ++FD  T  ++V    M+ G+  NG    A+++ R +LQ     +
Sbjct: 390 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRAN 449

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VTLAS+L +C  L+     +++H + +KNG      + +A+++ Y+KCG +  A Q F 
Sbjct: 450 SVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFI 509

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            + + D V W S+I + + +G  +E+I++F +M     + D ++    LSAC++
Sbjct: 510 GISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACAN 563



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 166/318 (52%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L+ C     +  GR+ H+ +L  G G N  + + L+ +Y  CG   DA+ +F ++   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
               WN M+  + +    D A+  +  M   G   D +TF  ++ +CG L S  LGR +H
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +    F+LDV V +SL+  Y++NG I DA  +FD M +K+ V WN M+ G+ +NGD  
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
            A  +  +M +    P+ VT A +LS C S  +     Q+H   + +G++    + N L+
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLL 290

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
             Y+KCG +  A + F  + + DLVTW  +I  Y  +G   E+  +F +M+S  ++PDSI
Sbjct: 291 AMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSI 350

Query: 467 AFLEVLSACSHGGLVSEG 484
            F   L   S G  + +G
Sbjct: 351 TFSSFLPLLSEGATLRQG 368



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 1/261 (0%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S++ +C        GRQ H  ++      + ++ T L+ MY   G   DA  +F  +   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
               WN M+ GF   G    A+     ML     PD+ T   ++ +CG L+     R VH
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
                 G +  + + ++LI  YS+ G I  A   F  +   D V W  ++  Y  +G   
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
            +  VF +M      P+S+ F  VLS C+   +++ G +   L++S   +  DS     L
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSS-GLEMDSPVANTL 289

Query: 508 TDLLGRVGLLVEAYDLLASMP 528
             +  + G L +A  L   MP
Sbjct: 290 LAMYAKCGHLFDARRLFDMMP 310



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L SIL +C   S   + RQ HA  + NG+     +   L+  Y  CG+   A   F  ++
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
                 W  +I  +   G    ++  + KML     PD   F  V+ AC  GGL S  L
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC--GGLNSVAL 165


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/620 (35%), Positives = 340/620 (54%), Gaps = 72/620 (11%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           +H+ I+      ++ +QN+++ VY KC   DD  KLFD M  RN  TWN+LIS +   G 
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 144 --------GNVTP------------------------YFRRMLLDNVRLDHITFNSLLRA 171
                   G++                          YF +M  ++  L+  +F S L A
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C    D+ +G ++H+ + K  +  + ++ SAL+D+Y KCG V  A  VF  ++ R+LV W
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +++CY  N     A+ VF  M   G++ D  T +S+V++C +L + K G QIH  V+K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 292 -QSFDLDVLVATSLVDMYAKNGNIDDACRVFD---------------------------- 322
              F  D+++  +LVDMYAK   +++A RVFD                            
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336

Query: 323 ---GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
               MT +NVVSWN ++ G+ QNG+  EA++L R + + S  P   T  ++LS+C +L+ 
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396

Query: 380 SCETRQVHAYAIK------NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
               RQ H + +K      +G ++ + + N+LI+ Y KCGSI    + F  +KE D V+W
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 456

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +II  YA +G   E++++F KML    +PD +  + VL ACSH GLV EG  YF   + 
Sbjct: 457 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYF-FSME 515

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           ++ ++P  +HYTC+ DLLGR G L EA +L+ +MP+ P +   G+ + ACKVHG+I + K
Sbjct: 516 EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGK 575

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            AAEKLLE++P     Y L+SN+YA    W DV R+RK+MR     K PGCSWIE+   +
Sbjct: 576 HAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRV 635

Query: 614 HTFVSSDRSHPQAVHMYAML 633
           H F+  D+SHP    +Y++L
Sbjct: 636 HVFLVKDKSHPHRKQIYSVL 655



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/444 (29%), Positives = 211/444 (47%), Gaps = 63/444 (14%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  AL   A    L  G Q+H+ + K      + + + ++ +Y KC +    E++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+VTWN+LI+     G        F RM+   +  D +T  S++ AC     ++ G +
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 184 LHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFD--------------------- 221
           +H+ ++K   F  +  + +ALVD+Y KC  V +ARRVFD                     
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 222 ----------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                     ++  R++V WN +++ Y  N   + A+ +F L++ E +   ++TF +L++
Sbjct: 330 SVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLS 389

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDL------DVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +C  L    LGRQ H  V+KQ F+       D+ V  SL+DMY K G+I+D  RVF+ M 
Sbjct: 390 ACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK 449

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            ++ VSWN ++VG+ QNG G EA+++ R ML     PD VT+  +L +C           
Sbjct: 450 ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS---------- 499

Query: 386 VHAYAIKNGVQAFLSIEN----ALINAYSKCGSIAGALQCFGSVK--------EPDLVTW 433
            HA  ++ G   F S+E      L + Y+    + G   C    K         PD V W
Sbjct: 500 -HAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVW 558

Query: 434 TSIIGAYAFHGLSKESIEVFEKML 457
            S++ A   HG  +      EK+L
Sbjct: 559 GSLLAACKVHGNIEMGKHAAEKLL 582



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 190/373 (50%), Gaps = 39/373 (10%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  LL +C+++      R +H+ IL   F +  F+ + L+D+YGKC  ++DAR++FD + 
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 225 CR-------------------------------DLVLWNVMVSCYALNCLGDGAIAVFNL 253
            R                               D   WN MVS +A +   + ++  F  
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVK 137

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  E    + ++F S +++C  L    +G Q+H LV K  +  DV + ++L+DMY+K G+
Sbjct: 138 MHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS 197

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A  VF GM  +N+V+WN+++  + QNG   EA+++   M+     PDEVTLAS++S+
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 374 CGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C SL    E  Q+HA  +K N  +  L + NAL++ Y+KC  +  A + F  +   ++V+
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            TS++  YA     K +  +F KM    V    +++  +++  +  G   E LR F L+ 
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 493 SDYHILPDSEHYT 505
            +  I P   HYT
Sbjct: 374 RE-SIWPT--HYT 383



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 138/295 (46%), Gaps = 31/295 (10%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F+ L++SC    S++  R +H  ++   F +++ +   L+D+Y K   +DDA ++FD M 
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 326 AKNVV-------------------------------SWNTMVVGFGQNGDGREAVKLLRD 354
            +N                                 SWN+MV GF Q+    E+++    
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVK 137

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M +  F  +E +  S LS+C  L       QVHA   K+     + + +ALI+ YSKCGS
Sbjct: 138 MHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS 197

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +A A + F  + E +LVTW S+I  Y  +G + E++EVF +M+   + PD +    V+SA
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
           C+    + EGL+    ++       D      L D+  +   + EA  +   M I
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 19/246 (7%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGL------CNKLSLQNQVLHVYV 109
            ES    H  +   L   A    L  G+Q H+H++K G        + + + N ++ +Y+
Sbjct: 374 RESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYM 433

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNS 167
           KC + +D  ++F++M+ R+ V+WN +I G      G      FR+ML+   + DH+T   
Sbjct: 434 KCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIG 493

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-L 224
           +L AC  A  +E GR  H F      GL       + +VDL G+ G + +A+ + + + +
Sbjct: 494 VLCACSHAGLVEEGR--HYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPV 551

Query: 225 CRDLVLW-NVMVSCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGS---- 278
             D V+W +++ +C     +  G  A   L+ ++    G Y   S++    G  G     
Sbjct: 552 NPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRV 611

Query: 279 SKLGRQ 284
            KL RQ
Sbjct: 612 RKLMRQ 617



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 51/263 (19%)

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L+RD+    + P+    A +L SC     +  TR VHA  +       + I+N LI+ Y 
Sbjct: 6   LVRDL----YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 411 KC-------------------------------GSIAGALQCFGSVKEPDLVTWTSIIGA 439
           KC                               G +  A + FGS+ EPD  +W S++  
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           +A H   +ES+E F KM       +  +F   LSAC+       GL   N+    + ++ 
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACA-------GLMDLNMGTQVHALVS 174

Query: 500 DSEHYT------CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            S + T       L D+  + G +  A ++ + M IE    T  + I   + +G    A 
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQNGPASEAL 233

Query: 554 WAAEKLLE--LEPSKPVNYALVS 574
               ++++  LEP +    ++VS
Sbjct: 234 EVFVRMMDSGLEPDEVTLASVVS 256


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 340/557 (61%), Gaps = 2/557 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +HS I+  G  +  ++   ++ +Y KC ++ D  ++F+++  R+++ WNT+I G
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   G     +  + +M  + V  + IT+  LL ACV +  +  G+ +HS + K GF  +
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+ +Y +CG ++DAR VFD+++ +D++ W  M+   A +  G  A+ V+  M+ 
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G++ +  T++S++N+C +  + + GR+IH  V++     D  V  +LV+MY+  G++ D
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  +++V++N M+ G+  +  G+EA+KL   + +    PD+VT  ++L++C +
Sbjct: 483 ARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 542

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  R++H    K G  +  S+ NAL++ Y+KCGS + A   F  + + ++++W +I
Sbjct: 543 SGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAI 602

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG  ++++++FE+M    V+PD + F+ +LSACSH GL+ EG RYF  M  D+ 
Sbjct: 603 IGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFA 662

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  EHY C+ DLLGR G L EA  L+ +MP +  +   GA +GAC++HG++ +A+ AA
Sbjct: 663 IIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAA 722

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E  L+L+    V Y  +S++YA+   W   A+LRK+M      K PG SWI++  ++H F
Sbjct: 723 ESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYF 782

Query: 617 VSSDRSHPQAVHMYAML 633
           V+ DRSHPQ+  +YA L
Sbjct: 783 VAEDRSHPQSEKIYAEL 799



 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 154/500 (30%), Positives = 272/500 (54%), Gaps = 5/500 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L+ G+++H   M+ GL   + + N +L++Y KC + ++  ++FD+M  +++V+W   I
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 137 SGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            G  +CG + T +  F++M  + V  + IT+ S+L A      ++ G+ +HS IL  G  
Sbjct: 200 GGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE 259

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +  V +ALV +Y KCG  +D R+VF++++ RDL+ WN M+   A     + A  V+N M
Sbjct: 260 SDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           + EG+  +  T+  L+N+C    +   G++IH  V K  F  D+ V  +L+ MY++ G+I
Sbjct: 320 QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSI 379

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DA  VFD M  K+V+SW  M+ G  ++G G EA+ + ++M Q    P+ VT  SIL++C
Sbjct: 380 KDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNAC 439

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            S +     R++H   ++ G+     + N L+N YS CGS+  A Q F  + + D+V + 
Sbjct: 440 SSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYN 499

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++IG YA H L KE++++F+++    ++PD + ++ +L+AC++ G + E  R  + ++  
Sbjct: 500 AMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL-EWAREIHTLVRK 558

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
                D+     L     + G   +A  +   M  +    +  A IG    HG    A  
Sbjct: 559 GGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM-TKRNVISWNAIIGGSAQHGRGQDALQ 617

Query: 555 AAEKLLELEPSKPVNYALVS 574
             E+ +++E  KP     VS
Sbjct: 618 LFER-MKMEGVKPDIVTFVS 636



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 248/487 (50%), Gaps = 6/487 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y + LK   +   L  G+Q+H HI++          N ++++Y++C + ++  +++ +
Sbjct: 24  SDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKK 83

Query: 124 MRV--RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           +    R + +WN ++ G I  G         R+M    +  D  T  S L +C     +E
Sbjct: 84  LSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALE 143

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            GR +H   ++ G   +  V++ ++++Y KCG +E+AR VFD++  + +V W + +  YA
Sbjct: 144 WGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYA 203

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                + A  +F  M  EG+  +  T+ S++N+  +  + K G+ +H  ++    + D  
Sbjct: 204 DCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTA 263

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V T+LV MYAK G+  D  +VF+ +  +++++WNTM+ G  + G   EA ++   M +  
Sbjct: 264 VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG 323

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+++T   +L++C + +     +++H+   K G  + + ++NALI+ YS+CGSI  A 
Sbjct: 324 VMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDAR 383

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D+++WT++IG  A  G   E++ V+++M    V P+ + +  +L+ACS   
Sbjct: 384 LVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPA 443

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            +  G R  +  + +  +  D+     L ++    G + +A  +   M I+       A 
Sbjct: 444 ALEWG-RRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAM 501

Query: 540 IGACKVH 546
           IG    H
Sbjct: 502 IGGYAAH 508



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 132/234 (56%), Gaps = 2/234 (0%)

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           DGA+ V   ++ +G + +   +  ++  C  +     GRQ+H  +I+     D     +L
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 305 VDMYAKNGNIDDACRVFDGMT--AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           ++MY + G+I++A +V+  ++   + V SWN MVVG+ Q G   +A+KLLR M Q    P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T+ S LSSC S       R++H  A++ G+   + + N ++N Y+KCGSI  A + F
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             +++  +V+WT  IG YA  G S+ + E+F+KM    V P+ I ++ VL+A S
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFS 238


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/570 (37%), Positives = 337/570 (59%), Gaps = 3/570 (0%)

Query: 66   YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
            +S  LK  A  G + + K++H  + KLG  +  ++ N ++  Y K    D   KLFDE+ 
Sbjct: 556  FSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG 615

Query: 126  VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             R++V+WN++ISG +  G   +   +F +ML+  V +D  T  + + AC     + +GR 
Sbjct: 616  DRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRA 675

Query: 184  LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            LH   +K  F      ++ L+D+Y KCG + DA + F+++  + +V W  +++ Y    L
Sbjct: 676  LHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGL 735

Query: 244  GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
             D AI +F  M  +G+  D ++ +S++++C    S   GR +H  + K +  L + V+ +
Sbjct: 736  YDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNA 795

Query: 304  LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            L+DMYAK G++++A  VF  +  K++VSWNTM+ G+ +N    EA+KL  +M + S  PD
Sbjct: 796  LMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR-PD 854

Query: 364  EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             +T+A +L +CGSL+     R +H   ++NG  + L + NALI+ Y KCGS+  A   F 
Sbjct: 855  GITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFD 914

Query: 424  SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             + E DL+TWT +I     HGL  E+I  F+KM    ++PD I F  +L ACSH GL++E
Sbjct: 915  MIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNE 974

Query: 484  GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
            G  +FN MIS+ ++ P  EHY C+ DLL R G L +AY+L+ +MPI+P +   GA +  C
Sbjct: 975  GWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGC 1034

Query: 544  KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            ++H  + LA+  AE + ELEP     Y L++N+YA    W +V +LR+ +      K PG
Sbjct: 1035 RIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPG 1094

Query: 604  CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            CSWIE+ G+  TFVS+D +HPQA  ++++L
Sbjct: 1095 CSWIEVQGKFTTFVSADTAHPQAKSIFSLL 1124



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/527 (29%), Positives = 260/527 (49%), Gaps = 29/527 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L++ A+   LQ+GK +HS I   G+  +  L  +++ +YV C A  +  ++FD + 
Sbjct: 454 YSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHIL 513

Query: 126 VRN-IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             N +  WN ++S     G        F++M    +  +  TF+ +L+       +   +
Sbjct: 514 SDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECK 573

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           R+H  + K+GFG    V ++L+  Y K G V+ A ++FDE+  RD+V WN M+S   +N 
Sbjct: 574 RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+  F  M +  +  D  T  + V +C  +GS  LGR +HG  +K  F  +V+   
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNN 693

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMY+K GN++DA + F+ M  K VVSW +++  + + G   +A++L  +M      P
Sbjct: 694 TLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSP 753

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  ++ S+L +C   +   + R VH Y  KN +   L + NAL++ Y+KCGS+  A   F
Sbjct: 754 DVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVF 813

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------ 476
             +   D+V+W ++IG Y+ + L  E++++F +M   + RPD I    +L AC       
Sbjct: 814 SQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALE 872

Query: 477 -----HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
                HG ++  G        S+ H+         L D+  + G LV A  L   +P E 
Sbjct: 873 IGRGIHGCILRNGYS------SELHVA------NALIDMYVKCGSLVHARLLFDMIP-EK 919

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
              T    I  C +HG +G    A  + + +   KP      S +YA
Sbjct: 920 DLITWTVMISGCGMHG-LGNEAIATFQKMRIAGIKPDEITFTSILYA 965



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 202/380 (53%), Gaps = 16/380 (4%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            LD   ++S+L+ C +   ++ G+ +HS I   G  +   + + LV +Y  CG + + RR
Sbjct: 448 ELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRR 507

Query: 219 VFDEVLCRDLV-LWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           +FD +L  + V LWN+M+S YA   +GD   +I +F  M+  G+ G+ +TFS ++    T
Sbjct: 508 IFDHILSDNKVFLWNLMMSEYAK--IGDYRESIYLFKKMQKLGITGNSYTFSCILKCFAT 565

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           LG     ++IHG V K  F     V  SL+  Y K+G +D A ++FD +  ++VVSWN+M
Sbjct: 566 LGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSM 625

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSISCETRQVHAYAIK 392
           + G   NG    A++    ML      D  TL + +++C   GSLS+    R +H   +K
Sbjct: 626 ISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG---RALHGQGVK 682

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
                 +   N L++ YSKCG++  A+Q F  + +  +V+WTS+I AY   GL  ++I +
Sbjct: 683 ACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRL 742

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI--LPDSEHYTCLTDL 510
           F +M S  V PD  +   VL AC+ G  + +G    N +  +     LP S     L D+
Sbjct: 743 FYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS---NALMDM 799

Query: 511 LGRVGLLVEAYDLLASMPIE 530
             + G + EAY + + +P++
Sbjct: 800 YAKCGSMEEAYLVFSQIPVK 819



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 1/243 (0%)

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           +GD   AV  L   +  + D   +SS++  C      + G+ +H ++      ++ ++  
Sbjct: 431 VGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGA 490

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKN-VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            LV MY   G + +  R+FD + + N V  WN M+  + + GD RE++ L + M +    
Sbjct: 491 KLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGIT 550

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            +  T + IL    +L    E +++H    K G  ++ ++ N+LI  Y K G +  A + 
Sbjct: 551 GNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKL 610

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  + + D+V+W S+I     +G S  ++E F +ML   V  D    +  ++AC++ G +
Sbjct: 611 FDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSL 670

Query: 482 SEG 484
           S G
Sbjct: 671 SLG 673


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 332/558 (59%), Gaps = 2/558 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK+ H+ ++K+G  +   +   ++ +YVK  + D   ++FD +  R++ T+N +I G
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G     +  F RM  +  + + I+F S+L  C   + +  G+ +H+  +  G   +
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V++AL+ +Y  CG +E ARRVFD++  RD+V W VM+  YA N   + A  +F  M+ 
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG++ D  T+  ++N+C +     L R+IH  V++  F  D+LV T+LV MYAK G I D
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKD 417

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M+ ++VVSW+ M+  + +NG G EA +    M + +  PD VT  ++L++CG 
Sbjct: 418 ARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGH 477

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L       +++  AIK  + + + + NALIN   K GSI  A   F ++ + D+VTW  +
Sbjct: 478 LGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVM 537

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG Y+ HG ++E++++F++ML    RP+S+ F+ VLSACS  G V EG R+F+ ++    
Sbjct: 538 IGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRG 597

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  E Y C+ DLLGR G L EA  L+  MP++P S      + AC+++G++ +A+ AA
Sbjct: 598 IVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAA 657

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E+ L  EP     Y  +S++YA+   W +VA++RK+M      K  GC+WIE+ G++HTF
Sbjct: 658 ERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTF 717

Query: 617 VSSDRSHPQAVHMYAMLC 634
           V  DRSHPQA  +YA L 
Sbjct: 718 VVEDRSHPQAGEIYAELA 735



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 243/457 (53%), Gaps = 6/457 (1%)

Query: 42  RSVLSSQLRNSGTIHE----STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNK 97
           RS+ + Q+  +  +H     S H     Y +  +          GKQ+  HI++ G    
Sbjct: 36  RSIFTGQVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLN 95

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           +   N ++ ++  C    +  + FD +  + +VTWN +I+G    G        FR+M+ 
Sbjct: 96  IYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVD 155

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
           + +    ITF  +L AC     +++G+  H+ ++KVGF  +  + +ALV +Y K G ++ 
Sbjct: 156 EAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDG 215

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +  RD+  +NVM+  YA +  G+ A  +F  M+ EG K +  +F S+++ C T
Sbjct: 216 ARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCST 275

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
             +   G+ +H   +      DV VAT+L+ MY   G+I+ A RVFD M  ++VVSW  M
Sbjct: 276 PEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVM 335

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ +N +  +A  L   M +    PD +T   I+++C S +     R++H+  ++ G 
Sbjct: 336 IRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGF 395

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              L ++ AL++ Y+KCG+I  A Q F ++   D+V+W+++IGAY  +G  +E+ E F  
Sbjct: 396 GTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHL 455

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           M  + V PD + ++ +L+AC H G +  G+  +   I
Sbjct: 456 MKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAI 492


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 332/563 (58%), Gaps = 2/563 (0%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            GK +H  I++ G+ +   L N ++++Y +C +  + + +F+  + R++++WN++I+G   
Sbjct: 450  GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 142  CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
             G   T Y  F+ M  + +  D+ITF S+L  C   + +E+G+++H  I + G  L+  +
Sbjct: 510  HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNL 569

Query: 200  SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
             +AL+++Y +CG ++DAR VF  +  RD++ W  M+   A       AI +F  M+ EG 
Sbjct: 570  GNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF 629

Query: 260  KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
            +    TFSS++  C +      G+++   ++   ++LD  V  +L+  Y+K+G++ DA  
Sbjct: 630  RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDARE 689

Query: 320  VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
            VFD M ++++VSWN ++ G+ QNG G+ AV+    M +    P++ +  S+L++C S S 
Sbjct: 690  VFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSA 749

Query: 380  SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
              E ++VHA  +K  +Q  + +  ALI+ Y+KCGS   A + F ++ E ++VTW ++I A
Sbjct: 750  LEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINA 809

Query: 440  YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
            YA HGL+ +++  F  M    ++PD   F  +LSAC+H GLV EG + F+ M S+Y +LP
Sbjct: 810  YAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLP 869

Query: 500  DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
              EHY CL  LLGR     EA  L+  MP  P +      +GAC++HG+I LA+ AA   
Sbjct: 870  TIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNA 929

Query: 560  LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
            L+L    P  Y L+SNVYA+   W DVA++R++M      K PG SWIE+   IH F+++
Sbjct: 930  LKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAA 989

Query: 620  DRSHPQAVHMYAMLCTVFGLMEE 642
            DRSHP+   +YA L  +   MEE
Sbjct: 990  DRSHPETAEIYAELKRLSVEMEE 1012



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 251/471 (53%), Gaps = 4/471 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +HSHI + G  + + + N ++ +Y +C       +LF  M  R++++WN +I+G
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                  G     +++M  + V+   +TF  LL AC  +     G+ +H  IL+ G   N
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             +++AL+++Y +CG + +A+ VF+    RD++ WN M++ +A +   + A  +F  M+ 
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQN 525

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E ++ D  TF+S+++ C    + +LG+QIHG + +    LDV +  +L++MY + G++ D
Sbjct: 526 EELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQD 585

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  +  ++V+SW  M+ G    G+  +A++L   M    F P + T +SIL  C S
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTS 645

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            +   E ++V AY + +G +    + NALI+AYSK GS+  A + F  +   D+V+W  I
Sbjct: 646 SACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKI 705

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA +GL + ++E   +M    V P+  +F+ +L+ACS    + EG R  +  I    
Sbjct: 706 IAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKR-VHAEIVKRK 764

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +  D      L  +  + G   EA ++  ++ IE    T  A I A   HG
Sbjct: 765 LQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHG 814



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 250/468 (53%), Gaps = 3/468 (0%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T +  + Y   L+   +   L + K++H+ +++  +   + L N ++++YVKC++  D  
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQAD 176
           ++F EM  R++++WN+LIS     G     +  F  M       + IT+ S+L AC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           ++E G+++HS I+K G+  +  V ++L+ +YGKCG +  AR+VF  +  RD+V +N M+ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA        + +F  M  EG+  D  T+ +L+++  T      G++IH L +++  + 
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D+ V T+LV M  + G++D A + F G   ++VV +N ++    Q+G   EA +    M 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                 +  T  SIL++C +       + +H++  ++G  + + I NALI+ Y++CG + 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F ++ + DL++W +II  YA      E++ ++++M S  V+P  + FL +LSAC+
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           +    ++G +  +  I    I  +      L ++  R G L+EA ++ 
Sbjct: 443 NSSAYADG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 248/477 (51%), Gaps = 16/477 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-- 136
           L+ GK++HS I+K G      +QN +L +Y KC       ++F  +  R++V++NT++  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 137 ----SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
               + +  C G     F +M  + +  D +T+ +LL A      ++ G+R+H   ++ G
Sbjct: 204 YAQKAYVKECLG----LFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  V +ALV +  +CG V+ A++ F     RD+V++N +++  A +     A   + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR +G+  +  T+ S++N+C T  + + G+ IH  + +     DV +  +L+ MYA+ G
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG 379

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++  A  +F  M  ++++SWN ++ G+ +  D  EA++L + M      P  VT   +LS
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C + S   + + +H   +++G+++   + NAL+N Y +CGS+  A   F   +  D+++
Sbjct: 440 ACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W S+I  +A HG  + + ++F++M +  + PD+I F  VLS C +   +  G +  +  I
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG-KQIHGRI 558

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHG 547
           ++  +  D      L ++  R G L +A ++  S+      D +   A IG C   G
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL---QHRDVMSWTAMIGGCADQG 612



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           +E      S +S  LKV      L +GK++ ++I+  G      + N ++  Y K  +  
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMT 685

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D  ++FD+M  R+IV+WN +I+G      G     +  +M   +V  +  +F SLL AC 
Sbjct: 686 DAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACS 745

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
               +E G+R+H+ I+K     +  V +AL+ +Y KCG   +A+ VFD ++ +++V WN 
Sbjct: 746 SFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNA 805

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           M++ YA + L   A+  FN M  EG+K D  TF+S++++C   G    G QI
Sbjct: 806 MINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQI 857


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/581 (36%), Positives = 330/581 (56%), Gaps = 6/581 (1%)

Query: 72  VSAKFGFLQQ---GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           VS  F  L+    G+QLH +I+K G   + S+ N ++  Y+K    D   K+FDEM  R+
Sbjct: 201 VSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERD 260

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +++WN++I+G ++ G        F +ML   + +D  T  S+   C  +  I +GR +H 
Sbjct: 261 VISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHC 320

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           F +K  F       + L+D+Y KCG ++ A+ VF E+  R +V +  M++ YA   L   
Sbjct: 321 FGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGE 380

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  M  EG+  D +T ++++N C        G+++H  + +     D+ V+ +L+D
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMD 440

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEV 365
           MYAK G++ +A  VF  M  K+++SWNT++ G+ +N    EA+ L   +L +  F PDE 
Sbjct: 441 MYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDER 500

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+A +L +C SLS   + R++H Y ++NG  +   + N+L++ Y+KCG++  A   F  +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDI 560

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              DLV+WT +I  Y  HG  KE+I +F +M    + PD I+F+ +L ACSH GLV EG 
Sbjct: 561 TSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGW 620

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           R+FN+M  +  I P  EHY C+ D+L R G L +AY  + +MPI P +   GA +  C++
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H  + LA+  AEK+ ELEP     Y L++N+YA    W +V RLRK +      K PGCS
Sbjct: 681 HHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCS 740

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           WIEI G ++ FV+ D S+P+   + A L  V   M E   S
Sbjct: 741 WIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYS 781



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 233/454 (51%), Gaps = 4/454 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L++ A    L+ GK++ + I   G     +L +++  +Y  C    +  ++FD++++   
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKA 160

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + WN L++ +   G        F++M+   V +D  TF+ + ++      +  G +LH +
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGY 220

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ILK GFG    V ++LV  Y K   V+ AR+VFDE+  RD++ WN +++ Y  N L +  
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           ++VF  M   G++ D  T  S+   C       LGR +H   +K  F  +     +L+DM
Sbjct: 281 LSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDM 340

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G++D A  VF  M+ ++VVS+ +M+ G+ + G   EAVKL  +M +    PD  T+
Sbjct: 341 YSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            ++L+ C    +  E ++VH +  +N +   + + NAL++ Y+KCGS+  A   F  ++ 
Sbjct: 401 TAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
            D+++W ++IG Y+ +  + E++ +F  +L      PD      VL AC+      +G  
Sbjct: 461 KDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
               ++ + +   D      L D+  + G L+ A
Sbjct: 521 IHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLA 553



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  T  S+L+ C  +  ++ G+ + +FI   GF L+  + S L  +Y  CG +++A RV
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD+V     + WN++++  A +    G+I +F  M   G++ D +TFS +  S  +L S 
Sbjct: 152 FDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G Q+HG ++K  F     V  SLV  Y KN  +D A +VFD MT ++V+SWN+++ G+
Sbjct: 212 NGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             NG   + + +   ML      D  T+ S+ + C    +    R VH +    GV+A  
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCF----GVKACF 327

Query: 400 SIE----NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           S E    N L++ YSKCG +  A   F  +    +V++TS+I  YA  GL+ E++++FE+
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M    + PD      VL+ C+   L+ EG R     I +  +  D      L D+  + G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHE-WIKENDMGFDIFVSNALMDMYAKCG 446

Query: 516 LLVEAYDLLASMPIE 530
            + EA  + + M ++
Sbjct: 447 SMREAELVFSEMRVK 461



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           D+   FD    ++V   NT +  F ++G+ + AVKLL   + G +  D  TL S+L  C 
Sbjct: 52  DSITTFD----RSVTDANTQLRRFCESGNLKNAVKLLH--VSGKWDIDPRTLCSVLQLCA 105

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                 + ++V  +   NG     ++ + L   Y+ CG +  A + F  VK    + W  
Sbjct: 106 DSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNI 165

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           ++   A  G    SI +F+KM+S  V  DS  F
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 331/581 (56%), Gaps = 6/581 (1%)

Query: 72  VSAKFGFLQQ---GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           VS  F  L+    G+QLH  I+K G   + S+ N ++  Y+K +  D   K+FDEM  R+
Sbjct: 50  VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 109

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +++WN++I+G ++ G        F +ML+  + +D  T  S+   C  +  I +GR +HS
Sbjct: 110 VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 169

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             +K  F       + L+D+Y KCG ++ A+ VF E+  R +V +  M++ YA   L   
Sbjct: 170 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 229

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  M  EG+  D +T ++++N C        G+++H  + +     D+ V+ +L+D
Sbjct: 230 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 289

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEV 365
           MYAK G++ +A  VF  M  K+++SWNT++ G+ +N    EA+ L   +L+   F PDE 
Sbjct: 290 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 349

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+A +L +C SLS   + R++H Y ++NG  +   + N+L++ Y+KCG++  A   F  +
Sbjct: 350 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 409

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              DLV+WT +I  Y  HG  KE+I +F +M    +  D I+F+ +L ACSH GLV EG 
Sbjct: 410 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 469

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           R+FN+M  +  I P  EHY C+ D+L R G L++AY  + +MPI P +   GA +  C++
Sbjct: 470 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H  + LA+  AEK+ ELEP     Y L++N+YA    W  V RLRK +      K PGCS
Sbjct: 530 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 589

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           WIEI G ++ FV+ D S+P+  ++ A L  V   M E   S
Sbjct: 590 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 630



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 213/407 (52%), Gaps = 4/407 (0%)

Query: 121 FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FDE+++   + WN L++ +   G        F++M+   V +D  TF+ + ++      +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             G +LH FILK GFG    V ++LV  Y K   V+ AR+VFDE+  RD++ WN +++ Y
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N L +  ++VF  M + G++ D  T  S+   C       LGR +H + +K  F  + 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
               +L+DMY+K G++D A  VF  M+ ++VVS+ +M+ G+ + G   EAVKL  +M + 
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD  T+ ++L+ C    +  E ++VH +  +N +   + + NAL++ Y+KCGS+  A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSH 477
              F  ++  D+++W +IIG Y+ +  + E++ +F  +L      PD      VL AC+ 
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
                +G      ++ + +   D      L D+  + G L+ A+ L 
Sbjct: 361 LSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLF 406



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 160/315 (50%), Gaps = 9/315 (2%)

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDEV     + WN++++  A +    G+I +F  M   G++ D +TFS +  S  +L S 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G Q+HG ++K  F     V  SLV  Y KN  +D A +VFD MT ++V+SWN+++ G+
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             NG   + + +   ML      D  T+ S+ + C    +    R VH+     GV+A  
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI----GVKACF 176

Query: 400 SIE----NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           S E    N L++ YSKCG +  A   F  + +  +V++TS+I  YA  GL+ E++++FE+
Sbjct: 177 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 236

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M    + PD      VL+ C+   L+ EG R     I +  +  D      L D+  + G
Sbjct: 237 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW-IKENDLGFDIFVSNALMDMYAKCG 295

Query: 516 LLVEAYDLLASMPIE 530
            + EA  + + M ++
Sbjct: 296 SMQEAELVFSEMRVK 310


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/572 (36%), Positives = 342/572 (59%), Gaps = 3/572 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    +  G QLH  ++  G+  + S++N +L +Y KC  FDD  KLF  M   + 
Sbjct: 246 LSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADT 305

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G       +F  M+   V  D ITF+SLL +  + +++E  +++H +
Sbjct: 306 VTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCY 365

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    L+ F++SAL+D Y KC  V  A+ +F +    D+V++  M+S Y  N L   +
Sbjct: 366 IMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDS 425

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +    +  +  T  S++   G L + KLGR++HG +IK+ FD    +  +++DM
Sbjct: 426 LEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDM 485

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G ++ A  +F+ ++ +++VSWN+M+    Q+ +   A+ + R M     C D V++
Sbjct: 486 YAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSI 545

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           ++ LS+C +L      + +H + IK+ + + +  E+ LI+ Y+KCG++  A+  F ++KE
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLR 486
            ++V+W SII A   HG  K+S+ +F +M+  + +RPD I FLE++S+C H G V EG+R
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +F  M  DY I P  EHY C+ DL GR G L EAY+ + SMP  P +   G  +GAC++H
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            ++ LA+ A+ KL++L+PS    Y L+SN +A+ R W  V ++R +M++    K+PG SW
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSW 785

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
           IEI    H FVS D +HP++ H+Y++L ++ G
Sbjct: 786 IEINKRTHLFVSGDVNHPESSHIYSLLNSLLG 817



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 224/431 (51%), Gaps = 6/431 (1%)

Query: 46  SSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL 105
           S  LRNS    E T       S  L+  +    L+QGKQ+H+ ++   +        ++L
Sbjct: 20  SLPLRNSSRFLEETIPRR--LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERIL 77

Query: 106 HVYVKCKAFDDMEKLFDEMRVR--NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLD 161
            +Y  C +F D  K+F  + +R  +I  WN++IS  +  G       ++ +ML   V  D
Sbjct: 78  GMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPD 137

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             TF  L++ACV   + +    L   +  +G   N FV+S+L+  Y + G ++   ++FD
Sbjct: 138 VSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFD 197

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            VL +D V+WNVM++ YA     D  I  F++MR++ +  +  TF  +++ C +     L
Sbjct: 198 RVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDL 257

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G Q+HGLV+    D +  +  SL+ MY+K G  DDA ++F  M+  + V+WN M+ G+ Q
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           +G   E++    +M+     PD +T +S+L S          +Q+H Y +++ +   + +
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFL 377

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            +ALI+AY KC  ++ A   F      D+V +T++I  Y  +GL  +S+E+F  ++   +
Sbjct: 378 TSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437

Query: 462 RPDSIAFLEVL 472
            P+ I  + +L
Sbjct: 438 SPNEITLVSIL 448



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 234/468 (50%), Gaps = 6/468 (1%)

Query: 85  LHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           L   +  LG+ CN+  + + ++  Y++    D   KLFD +  ++ V WN +++G   CG
Sbjct: 160 LSDTVSSLGMDCNEF-VASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 144 G--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
              +V   F  M +D +  + +TF+ +L  C     I++G +LH  ++  G      + +
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +L+ +Y KCG  +DA ++F  +   D V WN M+S Y  + L + ++  F  M   G+  
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP 338

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  TFSSL+ S     + +  +QIH  +++ S  LD+ + ++L+D Y K   +  A  +F
Sbjct: 339 DAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIF 398

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
               + +VV +  M+ G+  NG   +++++ R +++    P+E+TL SIL   G L    
Sbjct: 399 SQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALK 458

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             R++H + IK G     +I  A+I+ Y+KCG +  A + F  + + D+V+W S+I   A
Sbjct: 459 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCA 518

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
                  +I++F +M    +  D ++    LSAC++    S G      MI  + +  D 
Sbjct: 519 QSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIK-HSLASDV 577

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
              + L D+  + G L  A ++  +M  E    +  + I AC  HG +
Sbjct: 578 YSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKL 624



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 6/208 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL   A       GK +H  ++K  L + +  ++ ++ +Y KC        +F  M+ 
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRR 183
           +NIV+WN++I+   N G   +    F  M+  + +R D ITF  ++ +C    D++ G R
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYAL 240
              S     G        + +VDL+G+ G + +A      +    D  +W  ++ +C   
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
             +    +A   LM L+     Y+   S
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLIS 753



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG--S 424
           L+ +L +C + ++  + +QVHA+ I N +      +  ++  Y+ CGS +   + F    
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           ++   +  W SII ++  +GL  +++  + KML   V PD   F  ++ AC
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC 148


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 331/581 (56%), Gaps = 6/581 (1%)

Query: 72  VSAKFGFLQQ---GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           VS  F  L+    G+QLH  I+K G   + S+ N ++  Y+K +  D   K+FDEM  R+
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 260

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +++WN++I+G ++ G        F +ML+  + +D  T  S+   C  +  I +GR +HS
Sbjct: 261 VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             +K  F       + L+D+Y KCG ++ A+ VF E+  R +V +  M++ YA   L   
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  M  EG+  D +T ++++N C        G+++H  + +     D+ V+ +L+D
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEV 365
           MYAK G++ +A  VF  M  K+++SWNT++ G+ +N    EA+ L   +L+   F PDE 
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+A +L +C SLS   + R++H Y ++NG  +   + N+L++ Y+KCG++  A   F  +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              DLV+WT +I  Y  HG  KE+I +F +M    +  D I+F+ +L ACSH GLV EG 
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           R+FN+M  +  I P  EHY C+ D+L R G L++AY  + +MPI P +   GA +  C++
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H  + LA+  AEK+ ELEP     Y L++N+YA    W  V RLRK +      K PGCS
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           WIEI G ++ FV+ D S+P+  ++ A L  V   M E   S
Sbjct: 741 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 781



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 237/458 (51%), Gaps = 4/458 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L++ A    L+ GK++ + I   G     +L +++  +Y  C    +  ++FDE+++   
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKA 160

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + WN L++ +   G        F++M+   V +D  TF+ + ++      +  G +LH F
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 220

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ILK GFG    V ++LV  Y K   V+ AR+VFDE+  RD++ WN +++ Y  N L +  
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           ++VF  M + G++ D  T  S+   C       LGR +H + +K  F  +     +L+DM
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM 340

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G++D A  VF  M+ ++VVS+ +M+ G+ + G   EAVKL  +M +    PD  T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            ++L+ C    +  E ++VH +  +N +   + + NAL++ Y+KCGS+  A   F  ++ 
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLR 486
            D+++W +IIG Y+ +  + E++ +F  +L      PD      VL AC+      +G  
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
               ++ + +   D      L D+  + G L+ A+ L 
Sbjct: 521 IHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLF 557



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 194/375 (51%), Gaps = 9/375 (2%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  T  S+L+ C  +  ++ G+ + +FI   GF ++  + S L  +Y  CG +++A RV
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDEV     + WN++++  A +    G+I +F  M   G++ D +TFS +  S  +L S 
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G Q+HG ++K  F     V  SLV  Y KN  +D A +VFD MT ++V+SWN+++ G+
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             NG   + + +   ML      D  T+ S+ + C    +    R VH+     GV+A  
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI----GVKACF 327

Query: 400 SIE----NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           S E    N L++ YSKCG +  A   F  + +  +V++TS+I  YA  GL+ E++++FE+
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M    + PD      VL+ C+   L+ EG R     I +  +  D      L D+  + G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAKCG 446

Query: 516 LLVEAYDLLASMPIE 530
            + EA  + + M ++
Sbjct: 447 SMQEAELVFSEMRVK 461



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           D+   FD    ++V   NT +  F ++G+   AVKLL   + G +  D  TL S+L  C 
Sbjct: 52  DSITTFD----RSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCA 105

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                 + ++V  +   NG     ++ + L   Y+ CG +  A + F  VK    + W  
Sbjct: 106 DSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNI 165

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----HGG 479
           ++   A  G    SI +F+KM+S  V  DS  F  V  + S     HGG
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 332/598 (55%), Gaps = 38/598 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   AK G L + +++   +    L  +    N +L      +   DME+LF  M  R+ 
Sbjct: 55  LTAYAKSGRLARARRVFDEMPDPNLFTR----NALLSALAHSRLVPDMERLFASMPERDA 110

Query: 130 VTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V++N LI+G  + G    +V  Y   +  ++VR   IT ++++       D  +G  +H 
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV----------------------- 223
            +L++GFG   FV S LVD+Y K G + DARRVF E+                       
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIED 230

Query: 224 --------LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
                   + RD + W  MV+    N L   A+ VF  MR EG+  D +TF S++ +CG 
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L +S+ G+QIH  + +  ++ +V V ++LVDMY+K  +I  A  VF  MT +N++SW  M
Sbjct: 291 LAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +VG+GQN    EAV+   +M      PD+ TL S++SSC +L+   E  Q H  A+ +G+
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             ++++ NAL+  Y KCGSI  A + F  +   D V+WT+++  YA  G +KE+I++FEK
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           ML + ++PD + F+ VLSACS  GLV +G  YF+ M  D+ I+P  +HYTC+ DL  R G
Sbjct: 471 MLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSG 530

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
              EA + +  MP  P +      + +C++ G++ + KWAAE LLE +P  P +Y L+ +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           ++A++  W +VA LR+ MRD    K PGCSWI+   ++H F + D+SHP +  +Y  L
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 368 ASILSSCGSLSISCETR---QVHAYAIKNGVQAFLS-IENALINAYSKCGSIAGALQCFG 423
           A+ILSS          R    VH   +K  +QA  + + N L+ AY+K G +A A + F 
Sbjct: 13  AAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFD 72

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + +P+L T  +++ A A   L  +     E++ +     D++++  +++  S  G  + 
Sbjct: 73  EMPDPNLFTRNALLSALAHSRLVPD----MERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 484 GLRYFNLMISDYHILP 499
            ++ +  ++ +  + P
Sbjct: 129 SVQLYRALLREESVRP 144


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/655 (34%), Positives = 351/655 (53%), Gaps = 76/655 (11%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           + +H+ ++K G  N++ +QN+++  Y KC + +D  ++FD+M  RNI TWN++++G+   
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 143 G---------------------------------GNVTPYFRRMLLDNVRLDHITFNSLL 169
           G                                      YF  M  +   L+  +F S+L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
            AC   +D+  G ++HS I K  F  + ++ SALVD+Y KCG V DA+RVFDE+  R++V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            WN +++C+  N     A+ VF +M    ++ D  T +S++++C +L + K+G+++HG V
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 290 IKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFDGM------------------------ 324
           +K      D++++ + VDMYAK   I +A  +FD M                        
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAA 339

Query: 325 -------TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
                    +NVVSWN ++ G+ QNG+  EA+ L   + + S CP   + A+IL +C  L
Sbjct: 340 RLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADL 399

Query: 378 SISCETRQVHAYAIKNGVQAFLSIE-------NALINAYSKCGSIAGALQCFGSVKEPDL 430
           +      Q H + +K+G + F S E       N+LI+ Y KCG +      F  + E D 
Sbjct: 400 AELHLGMQAHVHVLKHGFK-FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+W ++I  +A +G   E++E+F +ML    +PD I  + VLSAC H G V EG  YF+ 
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M  D+ + P  +HYTC+ DLLGR G L EA  ++  MP++P S   G+ + ACKVH +I 
Sbjct: 519 MTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNIT 578

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           L K+ AEKLLE+EPS    Y L+SN+YA    W DV  +RK MR     K PGCSWI+I 
Sbjct: 579 LGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638

Query: 611 GEIHTFVSSDRSHPQAVHMYAMLCTVFGLME-ENNVSGHCNVLDKEMDECT--LW 662
           G  H F+  D+SHP+   ++++L  +   M  E + +   ++  +EMD  +  LW
Sbjct: 639 GHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSLSSEEMDYSSNLLW 693



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 211/422 (50%), Gaps = 44/422 (10%)

Query: 66  YSQALKVSAKFGF--LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           YS A  +SA  G   + +G Q+HS I K    + + + + ++ +Y KC   +D +++FDE
Sbjct: 153 YSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDE 212

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN+V+WN+LI+     G  V     F+ ML   V  D +T  S++ AC     I+VG
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272

Query: 182 RRLHSFILKVGFGLN-CFVSSALVDLYGKCGFVEDARRVFD------------------- 221
           + +H  ++K     N   +S+A VD+Y KC  +++AR +FD                   
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332

Query: 222 ------------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
                       ++  R++V WN +++ Y  N   + A+++F L++ E +   +++F+++
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDL------DVLVATSLVDMYAKNGNIDDACRVFDG 323
           + +C  L    LG Q H  V+K  F        D+ V  SL+DMY K G +++   VF  
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  ++ VSWN M++GF QNG G EA++L R+ML+    PD +T+  +LS+CG      E 
Sbjct: 453 MMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEG 512

Query: 384 RQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYA 441
           R   +   ++ GV         +++   + G +  A      +  +PD V W S++ A  
Sbjct: 513 RHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACK 572

Query: 442 FH 443
            H
Sbjct: 573 VH 574



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 32/300 (10%)

Query: 262 DYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
           D   F+ L++SC  +  S+   R +H  VIK  F  ++ +   L+D Y+K G+++D  +V
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP------------------ 362
           FD M  +N+ +WN++V G  + G   EA  L R M +   C                   
Sbjct: 78  FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 363 -------------DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
                        +E + AS+LS+C  L+   +  QVH+   K+   + + I +AL++ Y
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           SKCG++  A + F  + + ++V+W S+I  +  +G + E+++VF+ ML   V PD +   
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            V+SAC+    +  G      ++ +  +  D        D+  +   + EA  +  SMPI
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 14/231 (6%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC------NKLSLQNQVLHVYVK 110
           ES    H  ++  LK  A    L  G Q H H++K G        + + + N ++ +YVK
Sbjct: 380 ESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query: 111 CKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG-GN-VTPYFRRMLLDNVRLDHITFNSL 168
           C   ++   +F +M  R+ V+WN +I G    G GN     FR ML    + DHIT   +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGV 499

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LC 225
           L AC  A  +E GR   S + +  FG+       + +VDL G+ GF+E+A+ + +E+ + 
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTR-DFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558

Query: 226 RDLVLW-NVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
            D V+W +++ +C     +  G      L+ +E    G Y   S++    G
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 321/570 (56%), Gaps = 2/570 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LKV      L++GK++H  ++       +     V+++Y KC+  DD  K+FD M 
Sbjct: 150 FTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP 209

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNT+I+G    G          RM  +  R D IT  ++L A      + VG+ 
Sbjct: 210 ERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H + ++ GF     +S+AL D+Y KCG VE AR +FD +  + +V WN M+  Y  N  
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + AIAVF  M  EG+     T    +++C  LG  + G+ +H  V + +   D+ V  S
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNS 389

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY+K   +D A  +F+ +  +  VSWN M++G+ QNG   EA+    +M      PD
Sbjct: 390 LISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPD 449

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T+ S++ +   LS++   + +H   I++ +   + +  AL++ YSKCG+I  A + F 
Sbjct: 450 SFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD 509

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + +  ++TW ++I  Y  HGL + ++++F+KM   AV P+ I +L V+SACSH GLV E
Sbjct: 510 MISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE 569

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GLR+F  M  DY + P  +HY  + DLLGR G + EA+D + +MPI P     GA +GAC
Sbjct: 570 GLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGAC 629

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+H +I + + AA+KL EL P +   + L++N+YAS   W  VA +RK M      K PG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           CS +E+  E+H+F S   +HPQ+  +YA L
Sbjct: 690 CSVVELRNEVHSFYSGSTTHPQSKRIYAFL 719



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 257/529 (48%), Gaps = 51/529 (9%)

Query: 83  KQLHSHI---MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           K+LH  I   +K GL N+   Q +++ ++ K  + ++  ++F+ +  +    ++T++ G 
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 140 INCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                  T   +  RM  D+V+     F  LL+ C    D++ G+ +H  ++   F  N 
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F  + +V++Y KC  ++DA ++FD +  RDLV WN +++ ++ N     A+ +   M+ E
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDE 242

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G + D  T  +++ +   +G   +G+ IHG  I+  F   V ++T+L DMY+K G+++ A
Sbjct: 243 GQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETA 302

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +FDGM  K VVSWN+M+ G+ QNG+  +A+ +   ML+    P  VT+   L +C  L
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 + VH +  +  + + +S+ N+LI+ YSKC  +  A   F ++     V+W ++I
Sbjct: 363 GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HG-------- 478
             YA +G   E++  F +M S  ++PDS   + V+ A +           HG        
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD 482

Query: 479 ----------------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
                           G +    + F+ MISD H++     +  + D  G  GL   A D
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----WNAMIDGYGTHGLGRAALD 537

Query: 523 LLASMP---IEPRSDTLGAFIGACKVHGSI--GLAKWAAEKL-LELEPS 565
           L   M    +EP   T  + I AC   G +  GL  + + K    LEPS
Sbjct: 538 LFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPS 586


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/642 (34%), Positives = 345/642 (53%), Gaps = 73/642 (11%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +++ L +  K    +  + +H  +++   C ++ +QN+++ VY KC   D   K+FD 
Sbjct: 25  SPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDR 84

Query: 124 MRVRNIVTWNTLISGIINCG---------------------------------GNVTPYF 150
           M  RN+ ++N++IS ++  G                                      +F
Sbjct: 85  MSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF 144

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
            RM  D+  L+  +F S L AC +  D+++G ++H  I K  + L+ F+ S L+D Y KC
Sbjct: 145 VRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKC 204

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G V  ARRVFD +  +++V WN +++CY  N     A+  F  M   G K D  T +S+V
Sbjct: 205 GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVV 264

Query: 271 NSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN- 328
           ++C TL + K G QIH  V+K   F  D+++  +LVDMYAK G +++A  VFD M  +N 
Sbjct: 265 SACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNA 324

Query: 329 ------------------------------VVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
                                         +VSWN ++ G+ QNG+  EA+ L R + + 
Sbjct: 325 VSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRE 384

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE-------NALINAYSK 411
           S CP   T  ++L++  +L+     RQ H++ +K+G + F S E       N+LI+ Y K
Sbjct: 385 SVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFR-FQSGEEPDIFVGNSLIDMYMK 443

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CGS+   L+ F ++ E D V+W ++I  YA +G   E++E+F+KML    +PD +  +  
Sbjct: 444 CGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGT 503

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           L ACSH GLV EG RYF  M  ++ +LP  +HYTC+ DLLGR G L EA DL+ SMP +P
Sbjct: 504 LCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQP 563

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
            +    + + ACKVH +I L K+ AEK+ E++P+    Y L++N+Y+    W D   +RK
Sbjct: 564 DAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRK 623

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +MR     K PGCSWI+I   +H F+  D+ HPQ   +Y++L
Sbjct: 624 LMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSIL 665



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 192/401 (47%), Gaps = 74/401 (18%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   F  LL  CV+       R +H  +++  F    F+ + L+D+YGKCG+++ AR+VF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 221 DEVLCR-------------------------------DLVLWNVMVSCYALNCLGDGAIA 249
           D +  R                               D   WN M++ +A +   + A+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
            F  M  +    + ++F S +++C  L   KLG QIHGL+ K  + LDV + + L+D Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G +  A RVFDGM  KNVVSWN ++  + QNG   EA++    M +  F PDEVTLAS
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 370 ILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCG--------------- 413
           ++S+C +L+   E  Q+HA  +K +  +  L + NAL++ Y+KCG               
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 414 ----------------SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
                           S+  A   F ++K+ D+V+W ++I  Y  +G ++E++ +F  + 
Sbjct: 323 NAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLK 382

Query: 458 SHAVRPDSIAFLEVLSAC-----------SHGGLVSEGLRY 487
             +V P    F  +L+A            +H  +V  G R+
Sbjct: 383 RESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRF 423



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 31/299 (10%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D   F+ L++ C  L SS+  R +HG +I+  F  +V +   L+D+Y K G +D A +VF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 322 DGMTAKNVV-------------------------------SWNTMVVGFGQNGDGREAVK 350
           D M+ +NV                                SWN+M+ GF Q+    EA+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
               M +  F  ++ +  S LS+C  L       Q+H    K+     + + + LI+ YS
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  A + F  ++E ++V+W  +I  Y  +G + E++E F +M     +PD +    
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
           V+SAC+      EG++    ++       D      L D+  + G + EA  +   MP+
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV 321



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 12/191 (6%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNK------LSLQNQVLHVYVK 110
           ES    H  +   L  SA    L+ G+Q HSH++K G   +      + + N ++ +Y+K
Sbjct: 384 ESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMK 443

Query: 111 CKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSL 168
           C + ++  ++F+ M  ++ V+WNT+I G    G  +     F++ML    + DH+T    
Sbjct: 444 CGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGT 503

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR 226
           L AC  A  +E GRR + F +    GL       + +VDL G+ G +E+A+ + + +  +
Sbjct: 504 LCACSHAGLVEEGRR-YFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQ 562

Query: 227 -DLVLWNVMVS 236
            D V+W+ ++S
Sbjct: 563 PDAVVWSSLLS 573



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           F  D    A +L  C  L  S + R VH   I+      + I+N LI+ Y KCG +  A 
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F  + E ++ ++ SII      G   ES  +F  M       D  ++  +++  +   
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLM----PEKDQCSWNSMIAGFAQHD 135

Query: 480 LVSEGLRYFNLMISDYHILPD 500
              E L +F  M  D  +L D
Sbjct: 136 RFEEALDWFVRMHRDDFVLND 156


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 332/598 (55%), Gaps = 38/598 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   AK G L + +++   +    L  +    N +L      +   DME+LF  M  R+ 
Sbjct: 55  LTAYAKSGRLARARRVFDEMPDPNLFTR----NALLSALAHSRLVPDMERLFASMPERDA 110

Query: 130 VTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V++N LI+G  + G    +V  Y   +  ++VR   IT ++++       D  +G  +H 
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV----------------------- 223
            +L++GFG   FV S LVD+Y K G + DARRVF E+                       
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIED 230

Query: 224 --------LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
                   + RD + W  MV+    N L   A+ VF  MR EG+  D +TF S++ +CG 
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L + + G+QIH  + +  ++ +V V ++LVDMY+K  +I  A  VF  MT +N++SW  M
Sbjct: 291 LAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +VG+GQN    EAV+   +M      PD+ TL S++SSC +L+   E  Q H  A+ +G+
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             ++++ NAL+  Y KCGSI  A + F  +   D V+WT+++  YA  G +KE+I++FEK
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           ML++ ++PD + F+ VLSACS  GLV +G  YF+ M  D+ I+P  +HYTC+ DL  R G
Sbjct: 471 MLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSG 530

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
              EA + +  MP  P +      + +C++ G++ + KWAAE LLE +P  P +Y L+ +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           ++A++  W +VA LR+ MRD    K PGCSWI+   ++H F + D+SHP +  +Y  L
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 368 ASILSSCGSLSISCETR---QVHAYAIKNGVQAFLS-IENALINAYSKCGSIAGALQCFG 423
           A+ILSS          R    VH   +K  +QA  + + N L+ AY+K G +A A + F 
Sbjct: 13  AAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFD 72

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + +P+L T  +++ A A   L  +     E++ +     D++++  +++  S  G  + 
Sbjct: 73  EMPDPNLFTRNALLSALAHSRLVPD----MERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 484 GLRYFNLMISDYHILP 499
            ++ +  ++ +  + P
Sbjct: 129 SVQLYRALLREESVRP 144


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 323/567 (56%), Gaps = 35/567 (6%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDN-- 157
           N +L    +     DME+LF  +  R+ V++N L++G             +  +L D   
Sbjct: 81  NSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAG 140

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           VR   IT + ++       D  +GR++H  IL++GFG   F  S LVD+Y K G + DAR
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDAR 200

Query: 218 RVFDE------VLC-------------------------RDLVLWNVMVSCYALNCLGDG 246
           RVFDE      V+C                         RD + W  MV+    N L   
Sbjct: 201 RVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESE 260

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ VF  MR EG+  D +TF S++ +CG L + + G+QIH  + +  ++ +V V ++LVD
Sbjct: 261 ALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVD 320

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K  ++  A  VF  M  KN++SW  M+VG+GQNG G EAV++  +M +    PD+ T
Sbjct: 321 MYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFT 380

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S++SSC +L+   E  Q H  A+ +G++ ++++ NAL+  Y KCGSI  A + F  + 
Sbjct: 381 LGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMS 440

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D V+WT+++  YA  G +KE+I++FEKMLS  V+PD + F+ VLSACS  GLV +G  
Sbjct: 441 FHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRS 500

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF+ M  D+ I+P  +HYTC+ DL  R G L +A + +  MP  P +      + AC++ 
Sbjct: 501 YFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLR 560

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G + + KWAAE LL+L+P  P +Y L+ +++AS+  W DVA+LR+ MRD    K PGCSW
Sbjct: 561 GDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSW 620

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           I+   ++H F + D+SHP +  +Y  L
Sbjct: 621 IKYKNKVHIFSADDQSHPFSRTIYEKL 647



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 199/413 (48%), Gaps = 35/413 (8%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  + V++  G    G+Q+H  I++LG        + ++ +Y K     D  ++FDEM  
Sbjct: 149 SGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEG 208

Query: 127 RNIVTWNTLISGIINCG---------------------------------GNVTPYFRRM 153
           +N+V  NT+I+G++ C                                        FRRM
Sbjct: 209 KNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRM 268

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
             + V +D  TF S+L AC     +E G+++H++I +  +  N FV SALVD+Y KC  V
Sbjct: 269 RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSV 328

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
             A  VF  ++ ++++ W  M+  Y  N  G+ A+ VF+ M+ +G+K D FT  S+++SC
Sbjct: 329 RLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSC 388

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
             L S + G Q H L +       V V+ +LV +Y K G+I+DA R+FD M+  + VSW 
Sbjct: 389 ANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 448

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIK 392
            +V+G+ Q G  +E + L   ML     PD VT   +LS+C    +  + R   H+    
Sbjct: 449 ALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQD 508

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHG 444
           + +         +I+ YS+ G +  A +    +   PD   W +++ A    G
Sbjct: 509 HDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 8/285 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   L        L++GKQ+H++I +    + + + + ++ +Y KC++    E +F  M 
Sbjct: 280 FGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMM 339

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +NI++W  +I G     CG      F  M  D ++ D  T  S++ +C     +E G +
Sbjct: 340 WKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ 399

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H   L  G      VS+ALV LYGKCG +EDA R+FDE+   D V W  +V  YA    
Sbjct: 400 FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGK 459

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLV-- 300
               I +F  M  +G+K D  TF  ++++C   G    GR   H +  +Q  D+  L   
Sbjct: 460 AKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSM--QQDHDIVPLDDH 517

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD 344
            T ++D+Y+++G +  A      M    +   W T++      GD
Sbjct: 518 YTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 37/223 (16%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA----VKLL 352
           +++   SL+   A+ G + D  R+F  +  ++ VS+N ++ GF + G    A    V LL
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           RD  +    P  +T++ ++    +L      RQVH   ++ G  A+    + L++ Y+K 
Sbjct: 136 RD--EAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKV 193

Query: 413 GSIA----------------------GALQC---------FGSVKEPDLVTWTSIIGAYA 441
           G I                       G L+C         F +++E D +TWT+++    
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLT 253

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +GL  E+++VF +M +  V  D   F  +L+AC     + EG
Sbjct: 254 QNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 296


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/582 (34%), Positives = 334/582 (57%), Gaps = 2/582 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ G+ +H  + K GL     +   ++ +YVKC+  +D   LFD+M+ R++VTW  +I G
Sbjct: 46  LQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 105

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
              CG        F +M  + V  D +   +++ AC +   +   R +  +I +  F L+
Sbjct: 106 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 165

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + +A++D+Y KCG VE AR +FD +  ++++ W+ M++ Y  +  G  A+ +F +M  
Sbjct: 166 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 225

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            GM  D  T +SL+ +C  L + ++GR IH +V K   DLD  V  +LVDMY K   I+D
Sbjct: 226 SGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIED 285

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +FD M  +++V+W  M+ G+ + G+  E++ L   M +    PD+V + +++ +C  
Sbjct: 286 ARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 345

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L    + R +  Y  +   Q  + +  A+I+ ++KCG +  A + F  ++E ++++W+++
Sbjct: 346 LGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAM 405

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I AY +HG  ++++++F  ML   + P+ I  + +L ACSH GLV EGLR+F+LM  DY 
Sbjct: 406 IAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYS 465

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           +  D +HYTC+ DLLGR G L EA  L+ SM +E      GAF+GAC+ H  + LA+ AA
Sbjct: 466 VRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAA 525

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
             LLEL+P  P +Y L+SN+YA+   W DVA+ R +M      K+PG +WIE+  + H F
Sbjct: 526 TSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQF 585

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
              D +HP++  +Y ML ++   +E        N +  ++DE
Sbjct: 586 SVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDE 627



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 232/449 (51%), Gaps = 19/449 (4%)

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           +   INC G     FR ++    R D+ T   ++RAC    ++++GR +H  + K G  L
Sbjct: 8   VGDYINCFGT----FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 63

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + FV +ALVD+Y KC  +EDAR +FD++  RDLV W VM+  YA     + ++ +F  MR
Sbjct: 64  DHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR 123

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+  D     ++V +C  LG+    R I   + ++ F LDV++ T+++DMYAK G ++
Sbjct: 124 EEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVE 183

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  +FD M  KNV+SW+ M+  +G +G GR+A+ L R ML     PD++TLAS+L +C 
Sbjct: 184 SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACS 243

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L      R +H    K G+     +  AL++ Y KC  I  A   F  + E DLVTWT 
Sbjct: 244 DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTV 303

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +IG YA  G + ES+ +F+KM    V PD +A + V+ AC+  G + +  R  +  I   
Sbjct: 304 MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRK 362

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
               D    T + D+  + G +  A ++   M  E    +  A I A   HG        
Sbjct: 363 KFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ------- 414

Query: 556 AEKLLELEPSK------PVNYALVSNVYA 578
             K L+L P        P    LVS +YA
Sbjct: 415 GRKALDLFPMMLRSGILPNKITLVSLLYA 443



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 214/404 (52%), Gaps = 9/404 (2%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           VL  ++R  G + +        ++      AK G + + + +  +I +      + L   
Sbjct: 117 VLFEKMREEGVVPDKVAMVTVVFA-----CAKLGAMHKARIIDDYIQRKKFQLDVILGTA 171

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLD 161
           ++ +Y KC   +   ++FD M  +N+++W+ +I+  G    G      FR ML   +  D
Sbjct: 172 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 231

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
            IT  SLL AC    ++++GR +H  + K G  L+ FV +ALVD+YGKC  +EDAR +FD
Sbjct: 232 KITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFD 291

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           ++  RDLV W VM+  YA     + ++ +F+ MR EG+  D     ++V +C  LG+   
Sbjct: 292 KMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHK 351

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
            R I   + ++ F LDV++ T+++DM+AK G ++ A  +FD M  KNV+SW+ M+  +G 
Sbjct: 352 ARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 411

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLS 400
           +G GR+A+ L   ML+    P+++TL S+L +C    +  E  +  +   ++  V+A + 
Sbjct: 412 HGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVK 471

Query: 401 IENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
               +++   + G +  AL+   S+  E D   W + +GA   H
Sbjct: 472 HYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTH 515



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 2/214 (0%)

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           MV GF + GD        R++++    PD  TL  ++ +C  L      R +H    K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +     +  AL++ Y KC  I  A   F  ++E DLVTWT +IG YA  G + ES+ +FE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           KM    V PD +A + V+ AC+  G + +  R  +  I       D    T + D+  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
           G +  A ++   M  E    +  A I A   HG 
Sbjct: 180 GCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 212


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 320/570 (56%), Gaps = 2/570 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LKV      L++GK++H  ++       +     V+++Y KC+  DD  K+FD M 
Sbjct: 150 FTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP 209

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNT+I+G    G          RM  +  R D IT  ++L A      + VG+ 
Sbjct: 210 ERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H + ++ GF     +S+AL D+Y KCG VE AR +FD +  + +V WN M+  Y  N  
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + AIAVF  M  EG+     T    +++C  LG  + G+ +H  V + +   D+ V  S
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNS 389

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY+K   +D A  +F+ +  +  VSWN M++G+ QNG   EA+    +M      PD
Sbjct: 390 LISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPD 449

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T+ S++ +   LS++   + +H   I++ +   + +  AL++ YSKCG+I  A + F 
Sbjct: 450 SFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD 509

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + +  ++TW ++I  Y  HGL + ++++F+KM   AV P+ I +L V+SACSH GLV E
Sbjct: 510 MISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE 569

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GLR+F  M  DY + P  +HY  + DLLGR G + EA+D + +MPI P     GA  GAC
Sbjct: 570 GLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGAC 629

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+H +I + + AA+KL EL P +   + L++N+YAS   W  VA +RK M      K PG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           CS +E+  E+H+F S   +HPQ+  +YA L
Sbjct: 690 CSVVELRNEVHSFYSGSTTHPQSKRIYAFL 719



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 257/529 (48%), Gaps = 51/529 (9%)

Query: 83  KQLHSHI---MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           K+LH  I   +K GL N+   Q +++ ++ K  + ++  ++F+ +  +    ++T++ G 
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 140 INCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                  T   +  RM  D+V+     F  LL+ C    D++ G+ +H  ++   F  N 
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F  + +V++Y KC  ++DA ++FD +  RDLV WN +++ ++ N     A+ +   M+ E
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDE 242

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G + D  T  +++ +   +G   +G+ IHG  I+  F   V ++T+L DMY+K G+++ A
Sbjct: 243 GQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETA 302

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +FDGM  K VVSWN+M+ G+ QNG+  +A+ +   ML+    P  VT+   L +C  L
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 + VH +  +  + + +S+ N+LI+ YSKC  +  A   F ++     V+W ++I
Sbjct: 363 GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HG-------- 478
             YA +G   E++  F +M S  ++PDS   + V+ A +           HG        
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD 482

Query: 479 ----------------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
                           G +    + F+ MISD H++     +  + D  G  GL   A D
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----WNAMIDGYGTHGLGRAALD 537

Query: 523 LLASMP---IEPRSDTLGAFIGACKVHGSI--GLAKWAAEKL-LELEPS 565
           L   M    +EP   T  + I AC   G +  GL  + + K    LEPS
Sbjct: 538 LFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPS 586


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 340/576 (59%), Gaps = 2/576 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    L  G QLHS  +K GL  ++++ N +L +Y KC+  DD  +LF+ M   ++
Sbjct: 249 LSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDL 308

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G  V  +  F  M     R D IT  SLL A    + ++ G+ +H +
Sbjct: 309 VTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGY 368

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    ++ F+ SALVD+Y KC  V  A+ ++D     D+V+ + M+S Y LN + + A
Sbjct: 369 IVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEA 428

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +  + +K +  T +S++  C ++ +  LG+QIHG V++ +++    V ++L+DM
Sbjct: 429 LQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDM 488

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G +D +  +F  M+ K+ V+WN+M+  F QNG  +EA+ L R M       + +T+
Sbjct: 489 YAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITI 548

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           ++ LS+C SL      +++H   IK  ++A +  E+ALI+ Y+KCG++  AL+ F  + +
Sbjct: 549 SAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPD 608

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W SII AY  HGL KES+ +   M     +PD + FL ++SAC+H GLV EG++ 
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQL 668

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M   Y I P  EH+ C+ DL  R G L +A   +A MP +P +   GA + AC+VH 
Sbjct: 669 FQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHR 728

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LA  A+++L +L+P+    Y L+SN+ A    W  V+++R++M+DN   K+PG SW+
Sbjct: 729 NVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWV 788

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           ++    H FV+SD+SHP++  +Y  L T+   + E 
Sbjct: 789 DVNNSSHLFVASDKSHPESEDIYTSLKTLLQELREE 824



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 238/482 (49%), Gaps = 4/482 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           +K  A  G +  G+ +H     +GL N + + + ++ +Y       +    FD +  R+ 
Sbjct: 148 VKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDC 207

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++ G I  G        FR M       +  T    L  C    D+  G +LHS 
Sbjct: 208 VLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSL 267

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K G      V++ L+ +Y KC  ++DA R+F+ +   DLV WN M+S    N L   A
Sbjct: 268 AVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEA 327

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             +F  M+  G + D  T  SL+ +   L   K G+++HG +++   ++DV + ++LVD+
Sbjct: 328 FGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDI 387

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K  ++  A  ++D   A +VV  +TM+ G+  NG   EA+++ R +L+    P+ VT+
Sbjct: 388 YFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTI 447

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           AS+L  C S++     +Q+H Y ++N  +    +E+AL++ Y+KCG +  +   F  + +
Sbjct: 448 ASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQ 507

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D VTW S+I +++ +G  +E++++F +M    ++ ++I     LSAC+    +  G   
Sbjct: 508 KDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEI 567

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             + I    I  D    + L D+  + G L  A  +   MP +    +  + I A   HG
Sbjct: 568 HGVTIKG-PIKADIFAESALIDMYAKCGNLELALRVFEFMP-DKNEVSWNSIISAYGAHG 625

Query: 548 SI 549
            +
Sbjct: 626 LV 627



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 209/408 (51%), Gaps = 10/408 (2%)

Query: 79  LQQGKQLHSHIMKLGLC---NKLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIVTW 132
           L  G Q+H+  +  G     N L+L  ++L +YV  + F D   +F  +      + + W
Sbjct: 48  LPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPW 107

Query: 133 NTLISGIINCGGN--VTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           N LI G    G +     ++ +M         D  T   ++++C     + +GR +H   
Sbjct: 108 NWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTA 167

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
             +G   + +V SALV +Y   G + +AR  FD +  RD VLWNVM+         DGA+
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  MR  G + ++ T +  ++ C T      G Q+H L +K   + +V VA +L+ MY
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMY 287

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK   +DDA R+F+ M   ++V+WN M+ G  QNG   EA  L  DM +    PD +TL 
Sbjct: 288 AKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLV 347

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+L +   L+   + ++VH Y ++N V   + + +AL++ Y KC  +  A   + + +  
Sbjct: 348 SLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAI 407

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           D+V  +++I  Y  +G+S+E++++F  +L   ++P+++    VL  C+
Sbjct: 408 DVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCA 455



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 12/318 (3%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLN---CFVSSALVDLYGKCGFVEDARRVFD-- 221
           ++LR CV A  + +G ++H+  +  G   +     + + L+ +Y       DA  VF   
Sbjct: 37  AVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 222 -EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL----EGMKGDYFTFSSLVNSCGTL 276
                   + WN ++  +     G   +AV   +++         D  T   +V SC  L
Sbjct: 97  PRAAAASSLPWNWLIRGF--TAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+  LGR +H          DV V ++LV MYA  G + +A   FDG+  ++ V WN M+
Sbjct: 155 GAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMM 214

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G  + GD   AV+L R+M      P+  TLA  LS C + +      Q+H+ A+K G++
Sbjct: 215 DGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLE 274

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             +++ N L+  Y+KC  +  A + F  + + DLVTW  +I     +GL  E+  +F  M
Sbjct: 275 PEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDM 334

Query: 457 LSHAVRPDSIAFLEVLSA 474
                RPDSI  + +L A
Sbjct: 335 QRSGARPDSITLVSLLPA 352



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 105/269 (39%), Gaps = 9/269 (3%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLD---VLVATSLVDMYAKNGNIDDACRVFDGM 324
           +++  C +     LG QIH   +      D   + + T L+ MY       DA  VF  +
Sbjct: 37  AVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 325 ---TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSSCGSLSI 379
               A + + WN ++ GF   G    AV     M     +  PD  TL  ++ SC +L  
Sbjct: 97  PRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               R VH  A   G+   + + +AL+  Y+  G +  A   F  + E D V W  ++  
Sbjct: 157 MSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDG 216

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
               G    ++ +F  M +    P+       LS C+    +  G +  +L +    + P
Sbjct: 217 CIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVK-CGLEP 275

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           +      L  +  +   L +A+ L   MP
Sbjct: 276 EVAVANTLLAMYAKCQCLDDAWRLFELMP 304



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL   A    +  GK++H   +K  +   +  ++ ++ +Y KC   +   ++F+ M  
Sbjct: 549 SAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPD 608

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N V+WN++IS     G           M  +  + DH+TF +L+ AC  A  +E G +L
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQL 668

Query: 185 HSFILK---VGFGLNCFVSSALVDLYGKCGFVEDA-RRVFDEVLCRDLVLWNVMV-SCYA 239
              + K   +   +  F  + +VDLY + G ++ A + + D     D  +W  ++ +C  
Sbjct: 669 FQCMTKKYLIAPRMEHF--ACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRV 726

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL--GSSKLGR 283
              +    IA   L +L+     Y+   S +N+      G SK+ R
Sbjct: 727 HRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRR 772


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 332/598 (55%), Gaps = 38/598 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   AK G L + +++   +    L  +    N +L      +   DME+LF  M  R+ 
Sbjct: 55  LTAYAKSGRLARARRVFDEMPDPNLFTR----NALLSALAHSRLVPDMERLFASMPERDA 110

Query: 130 VTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V++N LI+G  + G    +V  Y   +  ++VR   IT ++++       D  +G  +H 
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV----------------------- 223
            +L++GFG   FV S LVD+Y K G + DARRVF E+                       
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIED 230

Query: 224 --------LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
                   + RD + W  MV+    N L   A+ VF  MR EG+  D +TF S++ +CG 
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L + + G+QIH  + +  ++ +V V ++LVDMY+K  +I  A  VF  MT +N++SW  M
Sbjct: 291 LAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +VG+GQN    EAV+   +M      PD+ TL S++SSC +L+   E  Q H  A+ +G+
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             ++++ NAL+  Y KCGSI  A + F  +   D V+WT+++  YA  G +KE+I++FEK
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           ML++ ++PD + F+ VLSACS  GLV +G  YF+ M  D+ I+P  +HYTC+ DL  R G
Sbjct: 471 MLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSG 530

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
              EA + +  MP  P +      + +C++ G++ + KWAAE LLE +P  P +Y L+ +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           ++A++  W +VA LR+ MRD    K PGCSWI+   ++H F + D+SHP +  +Y  L
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 368 ASILSSCGSLSISCETR---QVHAYAIKNGVQAFLS-IENALINAYSKCGSIAGALQCFG 423
           A+ILSS          R    VH   +K  +QA  + + N L+ AY+K G +A A + F 
Sbjct: 13  AAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFD 72

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + +P+L T  +++ A A   L  +     E++ +     D++++  +++  S  G  + 
Sbjct: 73  EMPDPNLFTRNALLSALAHSRLVPD----MERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 484 GLRYFNLMISDYHILP 499
            ++ +  ++ +  + P
Sbjct: 129 SVQLYRALLREESVRP 144


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 334/604 (55%), Gaps = 34/604 (5%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +   L    K     +G Q+H  ++K+GL   + +QN ++H Y +C   D   K+F+
Sbjct: 131 HYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFE 190

Query: 123 EMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            M  RN+V+W +LI G    +        F  M+   +R   +T   ++ AC +  D+++
Sbjct: 191 GMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDM 250

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G R+ ++I ++G  LN  + +ALVD+Y KCG ++ A+R+FDE + R+LVL+N ++S YA 
Sbjct: 251 GERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYAR 310

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
             L   A+A+ + M  +G + D  T  S +++   L     G+  HG VI+   +    +
Sbjct: 311 QGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSI 370

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR-------------- 346
              ++DMY K G  + ACRVFD M+ K VVSWN++  GF +NGD                
Sbjct: 371 GNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNA 430

Query: 347 -----------------EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
                            +A++L R+M       D VT+  I S+CG L      + VH Y
Sbjct: 431 VFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTY 490

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
             KNG+   + +  AL++ +++CG    A+Q F  + E D+  WT+ IG  A  G  + +
Sbjct: 491 IEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGA 550

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
             +F +ML   V+PD + F++VL+ACSHGG V +GL  F+LM  D+ I P  EHY C+ D
Sbjct: 551 TGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVD 609

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569
           LLGR GLL EA+DL+ SMP+EP     G+ + AC+VH ++ +A +AAE++ EL P +   
Sbjct: 610 LLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGV 669

Query: 570 YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
           + L+SN+YAS   W DVAR+R  +R+    KVPG S +++ G IH F S D SHP+  H+
Sbjct: 670 HVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHI 729

Query: 630 YAML 633
             ML
Sbjct: 730 ALML 733



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 232/511 (45%), Gaps = 43/511 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC---KAFDDMEKLFDEMR--VRN---IV 130
           L Q KQLH  I K GL    S   ++++   +    ++ D   K F+  +  VR+   + 
Sbjct: 38  LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALF 97

Query: 131 TWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
             N+LI G  + G        + RML+  V  +H TF  +L  C +      G ++H  +
Sbjct: 98  MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +K+G   + F+ + L+  Y +CG ++   +VF+ +  R++V W  ++  YA       A+
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           ++F  M   G++    T   ++++C  L    +G ++   + +    L+ ++  +LVDMY
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMY 277

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K G ID A R+FD    +N+V +NT++  + + G  REA+ +L +MLQ    PD VT+ 
Sbjct: 278 MKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTML 337

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-------------- 414
           S +S+   L      +  H Y I+NG++ + SI N +I+ Y KCG               
Sbjct: 338 SAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNK 397

Query: 415 -----------------IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
                            +  A + F  + E + V W ++I       L +++IE+F +M 
Sbjct: 398 TVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ 457

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              ++ D +  + + SAC + G   E  ++ +  I    I  D    T L D+  R G  
Sbjct: 458 GEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDP 516

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
             A  +   M  E       A IG   + G+
Sbjct: 517 QSAMQVFNKM-TERDVSAWTAAIGTMAMEGN 546



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 176/344 (51%), Gaps = 22/344 (6%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED---ARRVFD 221
            N  LR C   + +   ++LH  I K G        + LV+   +    E    AR+ F+
Sbjct: 28  LNESLRCCKTLNQL---KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFE 84

Query: 222 ----EVLCRD-LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
               +V   D L + N ++  Y+   LG  AI ++  M + G+  +++TF  +++ C  +
Sbjct: 85  LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKI 144

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            +   G Q+HG V+K   + DV +   L+  YA+ G++D   +VF+GM+ +NVVSW +++
Sbjct: 145 AAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLI 204

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +    +EAV L  +M++    P  VT+  ++S+C  L       +V AY  + G++
Sbjct: 205 CGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLK 264

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
               + NAL++ Y KCG+I  A + F    + +LV + +I+  YA  GL++E++ + ++M
Sbjct: 265 LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 324

Query: 457 LSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFN 489
           L    RPD +  L  +SA +           HG ++  GL  ++
Sbjct: 325 LQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWD 368



 Score = 45.4 bits (106), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)

Query: 373 SCGSLSISC-----ETRQVHAYAIKNGVQAFLSIENALINAYSKCGS---IAGALQCFGS 424
           SC + S+ C     + +Q+H    KNG+    S    L+NA ++  S   +  A + F  
Sbjct: 26  SCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFEL 85

Query: 425 VKEP-----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            KE       L    S+I  Y+  GL +E+I ++ +ML   V P+   F  VLS C+   
Sbjct: 86  FKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIA 145

Query: 480 LVSEGLR 486
              EG++
Sbjct: 146 AFCEGIQ 152


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/603 (34%), Positives = 346/603 (57%), Gaps = 10/603 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK  A  G +++ K++H +++KLG  +  ++ N ++  Y K    +    LFDE+ 
Sbjct: 198 FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 257

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+WN++I+G +  G  GN    F +ML+  V +D  T  S+L AC    ++ +GR 
Sbjct: 258 EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA 317

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH F +K  F      S+ L+D+Y KCG +  A  VF ++    +V W  +++ Y    L
Sbjct: 318 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGL 377

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI +F+ M+ +G++ D +T +S+V++C    S   GR +H  VIK     ++ V  +
Sbjct: 378 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 437

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MYAK G++++A  VF  +  K++VSWNTM+ G+ QN    EA++L  DM Q  F PD
Sbjct: 438 LINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPD 496

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           ++T+A +L +C  L+   + R++H + ++ G  + L +  AL++ Y+KCG +  A   F 
Sbjct: 497 DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFD 556

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + DL++WT +I  Y  HG   E+I  F +M    + PD  +F  +L+ACSH GL++E
Sbjct: 557 MIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNE 616

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G ++FN M ++  + P  EHY C+ DLL R+G L +AY  + SMPI+P +   G  +  C
Sbjct: 617 GWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGC 676

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H  + LA+  AE + ELEP     Y +++NVYA    W +V +LRK M+     + PG
Sbjct: 677 RIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPG 736

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSG-------HCNVLDKEM 656
           CSWIE+ G+ + FV+ +  HPQA  +  +L  +   M+  + S        + + ++KEM
Sbjct: 737 CSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEM 796

Query: 657 DEC 659
            +C
Sbjct: 797 IQC 799



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 264/520 (50%), Gaps = 31/520 (5%)

Query: 27  YQNQTTTITNAQ--KHDRSVLSSQLRNSGTIHESTHSAH---SFYSQALKVSAKFGFLQQ 81
           + N T ++T  Q  K ++      LRN+  +   + S     + Y   L++ A+   L+ 
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLED 112

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK++HS I+  G+    +L  +++ +YV C       K+FD++    +  WN L+S    
Sbjct: 113 GKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 172

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F++M    V  +  TF  +L+       ++  +R+H ++LK+GFG N  V
Sbjct: 173 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 232

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+  Y K G VE A  +FDE+   D+V WN M++   +N      + +F  M + G+
Sbjct: 233 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 292

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  S++ +C  +G+  LGR +HG  +K  F  +V+ + +L+DMY+K GN++ A  
Sbjct: 293 EVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 352

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  M    +VSW +++  + + G   +A+ L  +M      PD  T+ SI+ +C   S 
Sbjct: 353 VFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 412

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + R VH+Y IKNG+ + L + NALIN Y+KCGS+  A   F  +   D+V+W ++IG 
Sbjct: 413 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYF 488
           Y+ + L  E++E+F  M     +PD I    VL AC+           HG ++  G  YF
Sbjct: 473 YSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRG--YF 529

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               SD H+         L D+  + GLLV A  L   +P
Sbjct: 530 ----SDLHVA------CALVDMYAKCGLLVLAQLLFDMIP 559


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 334/584 (57%), Gaps = 4/584 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  A    +++G+Q+H  I KLG  +  ++ N ++  Y   +     +KLFDE+ 
Sbjct: 254 FSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELT 313

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++++WN++ISG +  G        F +ML+  V +D  T  ++  AC     + +G+ 
Sbjct: 314 DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKV 373

Query: 184 LHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           LHS+ +K          ++ L+D+Y KCG +  A RVF+ +  + +V W  M++ Y    
Sbjct: 374 LHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L DGAI +F+ M+  G+  D +  +S++N+C   G+ K G+ +H  + + + + +  V+ 
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L DMYAK G++ DA  VF  M  K+V+SWNTM+ G+ +N    EA+ L  +M + S  P
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESK-P 552

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T+A IL +C SL+   + R++H YA++NG      + NA+++ Y KCG +  A   F
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   DLV+WT +I  Y  HG   E+I  F +M    + PD ++F+ +L ACSH GL+ 
Sbjct: 613 DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLD 672

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG + FN+M  +  I P+ EHY C+ DLL R G LV+A+  + +MPI+P +   GA +  
Sbjct: 673 EGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCG 732

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H  + LA+  AE++ ELEP     Y L++N+YA    W +V +LRK +      K P
Sbjct: 733 CRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNP 792

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           GCSWIEI G+I+ FV+ D S PQA  +  +L  +   M+E   S
Sbjct: 793 GCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYS 836



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 158/585 (27%), Positives = 282/585 (48%), Gaps = 22/585 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L++ A+   ++ G+++ S I   G+     L  +++ +YVKC    +   +FD++ 
Sbjct: 153 YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLS 212

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              I  WN +IS     G  G     F++ML   ++ +  TF+S+L+       +E GR+
Sbjct: 213 ESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  I K+GF     V ++L+  Y     V  A+++FDE+  RD++ WN M+S Y  N L
Sbjct: 273 VHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVAT 302
            D  I +F  M + G+  D  T  ++  +C  +G+  LG+ +H   IK  + D +V    
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMY+K G+++ A RVF+ M  K VVSW +M+ G+ + G    A+KL  +M      P
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP 452

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   + SIL++C         + VH Y  +N ++    + NAL + Y+KCGS+  A   F
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVF 512

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +K+ D+++W ++IG Y  + L  E++ +F +M   + +PD      +L AC+    + 
Sbjct: 513 SHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALD 571

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +G       + + +   D      + D+  + GLLV A  L   +P +    +    I  
Sbjct: 572 KGREIHGYALRNGYS-EDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLV-SWTVMIAG 629

Query: 543 CKVH--GSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS------ERCW--FDVARLRKM 592
             +H  GS  +  +   ++  +EP +    + +S +YA       +  W  F++ +    
Sbjct: 630 YGMHGYGSEAINTFNQMRMTGIEPDE---VSFISILYACSHSGLLDEGWKIFNIMKKECQ 686

Query: 593 MRDNCDHKVPGCSWIEIAGEI---HTFVSSDRSHPQAVHMYAMLC 634
           +  N +H       +   G +   H F+ +    P A    A+LC
Sbjct: 687 IEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLC 731



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 200/372 (53%), Gaps = 2/372 (0%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N   D   + S+L+ C +   I  GRR+ S I   G  ++  +   LV +Y KCG +++ 
Sbjct: 145 NSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEG 204

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R VFD++    + LWN+M+S Y+ +     +I +F  M   G+K + +TFSS++     +
Sbjct: 205 RMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAV 264

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
              + GRQ+HGL+ K  F+    V  SL+  Y     +  A ++FD +T ++V+SWN+M+
Sbjct: 265 ARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMI 324

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-V 395
            G+ +NG     +++   ML      D  T+ ++  +C ++      + +H+Y+IK   +
Sbjct: 325 SGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATL 384

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              +   N L++ YSKCG +  A++ F  + E  +V+WTS+I  Y   GLS  +I++F++
Sbjct: 385 DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M S  V PD  A   +L+AC+  G +  G +  +  I + ++  +S     LTD+  + G
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCG 503

Query: 516 LLVEAYDLLASM 527
            + +A+D+ + M
Sbjct: 504 SMKDAHDVFSHM 515


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 340/576 (59%), Gaps = 2/576 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    L  G QLHS  +K GL  ++++ N +L +Y KC+  DD  +LF+ +   ++
Sbjct: 249 LSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDL 308

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G        F  ML    R D +T  SLL A    + ++ G+ +H +
Sbjct: 309 VTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGY 368

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    ++ F+ SALVD+Y KC  V  AR ++D     D+V+ + ++S Y LN + + A
Sbjct: 369 IIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKA 428

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +  + +K +  T +S++ +C ++ +  LG++IHG V++ +++    V ++L+DM
Sbjct: 429 LQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDM 488

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G +D +  +F  M+ K+ V+WN+M+  F QNG+ +EA+ L R M       + VT+
Sbjct: 489 YAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTI 548

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +S LS+C SL      +++H   IK  ++A +  E+ALI+ Y+KCG++  AL+ F  + +
Sbjct: 549 SSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPD 608

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W SII AY  HGL KES+    +M     +PD + FL ++SAC+H GLV EGL+ 
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQL 668

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  +Y I P  EH+ C+ DL  R G L +A   +A MP +P +   GA + AC+VH 
Sbjct: 669 FQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHR 728

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LA  A+++L +L+P     Y L+SN+ A    W  V+++R++M+DN   K+PG SW+
Sbjct: 729 NVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWV 788

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           ++    H FV+SD+SHP++  +Y  L  +   + E 
Sbjct: 789 DVNNSSHLFVASDKSHPESEDIYTSLKALLQELREE 824



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 239/482 (49%), Gaps = 4/482 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           +K  A  G +  G+ +H      GL + + + + ++ +Y       D    FD M  R+ 
Sbjct: 148 VKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDC 207

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++ G I  G  G     FR M +     +  T    L  C    D+  G +LHS 
Sbjct: 208 VLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSL 267

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K G      V++ L+ +Y KC  ++DA R+F+ +   DLV WN M+S    N L D A
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEA 327

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M   G + D  T  SL+ +   L   K G+++HG +I+    +D  + ++LVD+
Sbjct: 328 LGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDI 387

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K  ++  A  ++D   A +VV  +T++ G+  NG   +A+++ R +L+    P+ VT+
Sbjct: 388 YFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTV 447

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           AS+L +C S+S     +++H Y ++N  +    +E+AL++ Y+KCG +  +   F  +  
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSL 507

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D VTW S+I +++ +G  +E++++F +M    ++ +++     LSAC+    +  G   
Sbjct: 508 KDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEI 567

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             ++I    I  D    + L D+  + G +  A  +   MP +    +  + I A   HG
Sbjct: 568 HGVIIKG-PIKADIFAESALIDMYAKCGNMELALRVFEFMP-DKNEVSWNSIISAYGAHG 625

Query: 548 SI 549
            +
Sbjct: 626 LV 627



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 210/408 (51%), Gaps = 10/408 (2%)

Query: 79  LQQGKQLHSHIMKLGLC---NKLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIVTW 132
           L  G Q+H+  +  G     N L+L  ++L +YV  + F D   +F  +      + + W
Sbjct: 48  LPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPW 107

Query: 133 NTLISGIINCGGN--VTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           N LI G    G +     ++ +M         D  T   ++++C     + +GR +H   
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTA 167

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
              G   + +V SAL+ +Y   G + DAR  FD +  RD VLWNVM+  Y       GA+
Sbjct: 168 RATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAV 227

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  MR+ G + ++ T +  ++ C        G Q+H L +K   + +V VA +L+ MY
Sbjct: 228 RLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMY 287

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK   +DDA R+F+ +   ++V+WN M+ G  QNG   EA+ L  DML+    PD VTL 
Sbjct: 288 AKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLV 347

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+L +   L+   + ++VH Y I+N V     + +AL++ Y KC  +  A   + + +  
Sbjct: 348 SLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAI 407

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           D+V  +++I  Y  +G+S++++++F  +L   ++P+++    VL AC+
Sbjct: 408 DVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 12/318 (3%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLN---CFVSSALVDLYGKCGFVEDARRVFD-- 221
           +LLR CV A  + +G ++H+  +  G   N     + + L+ +Y       DA  VF   
Sbjct: 37  ALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 222 -EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL----EGMKGDYFTFSSLVNSCGTL 276
                   + WN ++  +     G  ++AV   +++         D  T   +V SC  L
Sbjct: 97  PRAAAGSSLPWNWLIRGF--TAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+  LGR +H          DV V ++L+ MY+  G + DA   FDGM  ++ V WN M+
Sbjct: 155 GAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMM 214

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ + GD   AV+L R+M      P+  TLA  LS C + +      Q+H+ A+K G++
Sbjct: 215 DGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLE 274

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             +++ N L++ Y+KC  +  A + F  +   DLVTW  +I     +GL  E++ +F  M
Sbjct: 275 QEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDM 334

Query: 457 LSHAVRPDSIAFLEVLSA 474
           L    RPDS+  + +L A
Sbjct: 335 LRSGARPDSVTLVSLLPA 352



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 13/269 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A    L  G+++H ++++     K  +++ ++ +Y KC   D    +F +M +
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSL 507

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ VTWN++IS     G        FR+M ++ ++ +++T +S L AC     I  G+ +
Sbjct: 508 KDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEI 567

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I+K     + F  SAL+D+Y KCG +E A RVF+ +  ++ V WN ++S Y  + L 
Sbjct: 568 HGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLV 627

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS- 303
             +++  + M+ EG K D+ TF +L+++C   G  + G Q+   + K+      L+A   
Sbjct: 628 KESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKE-----YLIAPRM 682

Query: 304 -----LVDMYAKNGNIDDACRVFDGMTAK 327
                +VD+Y+++G +D A +    M  K
Sbjct: 683 EHFACMVDLYSRSGRLDKAIQFIADMPFK 711



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 8/233 (3%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQ---SFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           +L+  C +     LG QIH   +     S    + + T L+ MY       DA  VF  +
Sbjct: 37  ALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSAL 96

Query: 325 ---TAKNVVSWNTMVVGFGQNGDGREAVKLLRDML--QGSFCPDEVTLASILSSCGSLSI 379
               A + + WN ++ GF   G    AV     M     +  PD  TL  ++ SC +L  
Sbjct: 97  PRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               R VH  A   G+ + + + +ALI  YS  G +  A   F  +   D V W  ++  
Sbjct: 157 VSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDG 216

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           Y   G    ++ +F  M      P+       LS C+    +  G++  +L +
Sbjct: 217 YIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAV 269


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/573 (35%), Positives = 318/573 (55%), Gaps = 2/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LKV      L++GK++H  ++  G  + +     V+++Y KC+  ++  K+FD M 
Sbjct: 178 FTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP 237

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V WNT+ISG    G   T      RM  +  R D IT  S+L A      + +GR 
Sbjct: 238 ERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRS 297

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H + ++ GF     VS+ALVD+Y KCG V  AR +FD +  + +V WN M+  Y  N  
Sbjct: 298 IHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGD 357

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  M  E ++    T    +++C  LG  + GR +H L+ +     DV V  S
Sbjct: 358 PGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNS 417

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY+K   +D A  +F+ +  K +VSWN M++G+ QNG   EA+     M   +  PD
Sbjct: 418 LISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPD 477

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T+ S++ +   LS+  + + +H   I+  +   + +  AL++ Y+KCG++  A + F 
Sbjct: 478 SFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFD 537

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E  + TW ++I  Y  HGL K ++E+FEKM    ++P+ + FL VLSACSH GLV E
Sbjct: 538 MMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEE 597

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +YF  M  DY + P  +HY  + DLLGR   L EA+D +  MPIEP     GA +GAC
Sbjct: 598 GFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGAC 657

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H ++ L + AA ++ +L+P     + L++N+YA+   W  VAR+R  M      K PG
Sbjct: 658 RIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPG 717

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
            S +E+  E+HTF S   SHPQA  +YA L T+
Sbjct: 718 WSVVELQNEVHTFYSGTTSHPQAKKIYAFLETL 750



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/495 (30%), Positives = 255/495 (51%), Gaps = 18/495 (3%)

Query: 83  KQLHSHI---MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           K+LH  I   +K GL ++   Q +++ ++ K  +  +  ++F  +  +    ++T++ G 
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 140 INCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                  +   +F RM  D VR     F  LL+ C    D+  G+ +H  ++  GF  N 
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNV 210

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F  + +V++Y KC  VE+A ++FD +  RDLV WN ++S YA N  G  A+ +   M+ E
Sbjct: 211 FAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEE 270

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G + D  T  S++ +   +GS ++GR IHG  ++  F+  V V+T+LVDMY+K G++  A
Sbjct: 271 GKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTA 330

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +FD MT K VVSWN+M+ G+ QNGD   A+++ + M+        VT+   L +C  L
Sbjct: 331 RLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADL 390

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
               + R VH    +  + + +S+ N+LI+ YSKC  +  A + F +++   LV+W ++I
Sbjct: 391 GDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMI 450

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS---D 494
             YA +G   E+I+ F KM    ++PDS   + V+ A +   ++ +      L+I    D
Sbjct: 451 LGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLD 510

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
            ++       T L D+  + G +  A  L   M  E    T  A I     +G+ GL K 
Sbjct: 511 KNVFVA----TALVDMYAKCGAVHTARKLFDMMD-ERHVTTWNAMIDG---YGTHGLGKA 562

Query: 555 AAE--KLLELEPSKP 567
           A E  + ++ E  KP
Sbjct: 563 ALELFEKMKKEVIKP 577


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/554 (36%), Positives = 319/554 (57%), Gaps = 2/554 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ LH + +K GL N + + + +L +Y K     +  ++F EM +RN+V+W  +I+G++ 
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N     YF  M    V  D  TF   L+AC  +  +  GR +H+  +K GF ++ FV
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ L  +Y KCG +E    +F+++  RD+V W  +++        + A+  F  MR   +
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV 314

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +TF+++++ C  L   + G Q+H L++       + V  S++ MYAK G +  +  
Sbjct: 315 SPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSV 374

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F  MT +++VSW+T++ G+ Q G   EA +LL  M      P E  LAS+LS+CG+++I
Sbjct: 375 IFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAI 434

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +Q+HAY +  G++    + +ALIN Y KCGSI  A + F + +  D+V+WT++I  
Sbjct: 435 LEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMING 494

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E I++FEK+    +RPDS+ F+ VLSACSH GLV  G RYFN M   Y I P
Sbjct: 495 YAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISP 554

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ DLL R G L +A  ++ +MP           + AC+VHG +   +  AE++
Sbjct: 555 SKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERI 614

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+LEP+    +  ++N+YAS+  W + A +RK+M+     K PG SWI++   +  FV+ 
Sbjct: 615 LQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAG 674

Query: 620 DRSHPQAVHMYAML 633
           DRSHPQ   +Y ML
Sbjct: 675 DRSHPQGEDIYNML 688



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 241/508 (47%), Gaps = 39/508 (7%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLL 155
           L   N+ L   VK     +  ++FD+M  ++ ++W TLISG +N   +      F+ M +
Sbjct: 49  LPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRV 108

Query: 156 DN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           ++ +R+D    +   +AC    D+  G  LH + +K G   + FV SAL+D+Y K G + 
Sbjct: 109 ESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           + RRVF E+  R++V W  +++          A+  F+ M    ++ D +TF+  + +C 
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
             G+   GR+IH   +K+ FD+   VA +L  MY K G ++    +F+ M+ ++VVSW T
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTT 288

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           ++    Q G    AV+    M +    P+E T A+++S C +L+      Q+HA  +  G
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLG 348

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           + A LS+EN+++  Y+KCG +  +   F  +   D+V+W++II  Y+  G   E+ E+  
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLS 408

Query: 455 KMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDY-------- 495
            M     +P   A   VLSAC            H  ++S GL +  +++S          
Sbjct: 409 WMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCG 468

Query: 496 ------HILPDSEH-----YTCLTDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIG 541
                  I   +E+     +T + +     G   E  DL   +P   + P S T    + 
Sbjct: 469 SIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528

Query: 542 ACKVHGSIGLAKW---AAEKLLELEPSK 566
           AC   G + L      A  K  ++ PSK
Sbjct: 529 ACSHAGLVDLGFRYFNAMSKKYQISPSK 556



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 202/396 (51%), Gaps = 4/396 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ ALK  A  G L  G+++H+  MK G      + N +  +Y KC   +    LF++M 
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +R++V+W T+I+ ++  G        F RM   +V  +  TF +++  C     IE G +
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ IL +G   +  V ++++ +Y KCG +  +  +F E+  RD+V W+ +++ Y+    
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGH 399

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A  + + MR+EG K   F  +S++++CG +   + G+Q+H  V+    +   +V ++
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MY K G+I++A R+FD     ++VSW  M+ G+ ++G  RE + L   + +    PD
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 364 EVTLASILSSCGSLS-ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
            VT   +LS+C     +    R  +A + K  +         +I+   + G ++ A    
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI 579

Query: 423 GSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            ++    D V W++++ A   HG  +      E++L
Sbjct: 580 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 615



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 167/370 (45%), Gaps = 10/370 (2%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFS 267
           K G + +ARR+FD++  +D + W  ++S Y        A+ +F  MR+E G++ D F  S
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
               +CG       G  +HG  +K      V V ++L+DMY KNG I +  RVF  M  +
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           NVVSW  ++ G  + G  +EA+    +M +     D  T A  L +C         R++H
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A A+K G      + N L   Y+KCG +   L  F  +   D+V+WT+II      G  +
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
            +++ F +M    V P+   F  V+S C++   +  G +   L++        S   + +
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 508 TDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
           T +  + G L  +  +   M    I   S  +  +     V  +  L  W     + +E 
Sbjct: 361 T-MYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSW-----MRMEG 414

Query: 565 SKPVNYALVS 574
            KP  +AL S
Sbjct: 415 PKPTEFALAS 424



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 167/322 (51%), Gaps = 12/322 (3%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    ++ G+QLH+ I+ LGL   LS++N ++ +Y KC        +F EM  R+IV+W+
Sbjct: 329 ANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWS 388

Query: 134 TLISGIINCGGNVTPYFR---RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           T+I+G  + GG+V+  F     M ++  +       S+L AC     +E G++LH+++L 
Sbjct: 389 TIIAG-YSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS 447

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
           +G      V SAL+++Y KCG +E+A R+FD     D+V W  M++ YA +      I +
Sbjct: 448 IGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDL 507

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSLVDMYA 309
           F  +   G++ D  TF  ++++C   G   LG R  + +  K            ++D+  
Sbjct: 508 FEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLC 567

Query: 310 KNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD----GREAVKLLRDMLQGSFCPDE 364
           + G + DA  + + M   ++ V W+T++     +GD     R A ++L+  L+ +     
Sbjct: 568 RAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQ--LEPNCAGTH 625

Query: 365 VTLASILSSCGSLSISCETRQV 386
           +TLA+I +S G    + + R++
Sbjct: 626 ITLANIYASKGKWREAADIRKL 647


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 339/605 (56%), Gaps = 9/605 (1%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y + LK   K   L   KQ+H  I+K  +     + N +LHVY++C    +   +FD +
Sbjct: 30  MYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDAL 89

Query: 125 RVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             ++  +WN +I+G +      +    FR M  + V+ +  T+  +L+AC     ++ G+
Sbjct: 90  VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGK 149

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H+ I   G   +  V +AL+ +YGKCG + +ARR+FD ++  D++ W VM+  YA + 
Sbjct: 150 EVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSG 209

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G  A  +   M  EG K +  T+ S++N+C + G+ K  +++H   +    +LDV V T
Sbjct: 210 NGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGT 269

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LV MYAK+G+IDDA  VFD M  ++VVSWN M+  F ++G G EA  L   M      P
Sbjct: 270 ALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKP 329

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D +   SIL++C S       +++H +A+ +G++  + +  AL++ YSK GSI  A   F
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +K  ++V+W ++I   A HGL ++++EVF +M +H V+PD + F+ VLSACSH GLV 
Sbjct: 390 DRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG   +  M   Y I PD  H  C+ DLLGR G L+EA   + +M ++P   T GA +G+
Sbjct: 450 EGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGS 509

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+ +G++ L +  A++ L+L+P     Y L+SN+YA    W  V+ +R MMR+    K P
Sbjct: 510 CRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEP 569

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN-------VSGHCNVLDKE 655
           G SWIE+  +IH F+ +D SHP+   +      V   ++          V  + N+ DKE
Sbjct: 570 GRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKE 629

Query: 656 MDECT 660
           +D C+
Sbjct: 630 LDICS 634



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 213/394 (54%), Gaps = 6/394 (1%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE        Y   LK  A    L+ GK++H+ I   GL + + +   +L +Y KC + +
Sbjct: 122 HEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSIN 181

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRML---LDNVRLDHITFNSLLRAC 172
           +  ++FD +   +I++W  +I G     GN    +R ML    +  + + IT+ S+L AC
Sbjct: 182 EARRIFDNLMNHDIISWTVMI-GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC 240

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                ++  +R+H   L  G  L+  V +ALV +Y K G ++DAR VFD +  RD+V WN
Sbjct: 241 ASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWN 300

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           VM+  +A +  G  A  +F  M+ EG K D   F S++N+C + G+ +  ++IH   +  
Sbjct: 301 VMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS 360

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             ++DV V T+LV MY+K+G+IDDA  VFD M  +NVVSWN M+ G  Q+G G++A+++ 
Sbjct: 361 GLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVF 420

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETR-QVHAYAIKNGVQAFLSIENALINAYSK 411
           R M      PD VT  ++LS+C    +  E R Q  A     G++  +S  N +++   +
Sbjct: 421 RRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGR 480

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            G +  A     ++  +PD  TW +++G+   +G
Sbjct: 481 AGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYG 514



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 206/369 (55%), Gaps = 1/369 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   +  +L+ C++  D+   +++H  I+K     N  V + L+ +Y +CG +++AR VF
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D ++ +    WN M++ Y  +   + A+ +F  M  EG++ +  T+  ++ +C +L + K
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G+++H  +     + DV V T+L+ MY K G+I++A R+FD +   +++SW  M+  + 
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+G+G+EA +L+  M Q  F P+ +T  SIL++C S       ++VH +A+  G++  + 
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR 266

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  AL+  Y+K GSI  A   F  +K  D+V+W  +IGA+A HG   E+ ++F +M +  
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG 326

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            +PD+I FL +L+AC+  G + E ++  +    D  +  D    T L  +  + G + +A
Sbjct: 327 CKPDAIMFLSILNACASAGAL-EWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDA 385

Query: 521 YDLLASMPI 529
             +   M +
Sbjct: 386 RVVFDRMKV 394



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 3/307 (0%)

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N L +  + + N ++  G+  D F +  ++  C         +Q+H  +IK   + +  V
Sbjct: 7   NTLSEAIVVLMNRLQ-RGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L+ +Y + G + +A  VFD +  K+  SWN M+ G+ ++    +A++L R+M     
Sbjct: 66  MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+  T   IL +C SLS     ++VHA     G+++ + +  AL+  Y KCGSI  A +
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F ++   D+++WT +IGAYA  G  KE+  +  +M     +P++I ++ +L+AC+  G 
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           +    R     + D  +  D    T L  +  + G + +A  +   M +     +    I
Sbjct: 246 LKWVKRVHRHAL-DAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVV-SWNVMI 303

Query: 541 GACKVHG 547
           GA   HG
Sbjct: 304 GAFAEHG 310


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 328/595 (55%), Gaps = 6/595 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK+ A    L  G+ +H+ +   GL  +      + ++Y KC+   D  ++FD M 
Sbjct: 228 FTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMP 287

Query: 126 VRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            R+ V WN L++G    G     V    R    D  R D +T  S+L AC  A  +   R
Sbjct: 288 ARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACR 347

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H+F ++ GF     VS+A++D+Y KCG V+ AR+VFD +  R+ V WN M+  YA N 
Sbjct: 348 EVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENG 407

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+A+F  M  EG+     +  + +++CG LG    GR++H L+++   + +V V  
Sbjct: 408 DATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMN 467

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+ MY K    D A +VFD +  K  VSWN M++G  QNG   +AV+L   M   +  P
Sbjct: 468 ALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKP 527

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  TL SI+ +   +S   + R +H Y+I+  +   + +  ALI+ Y+KCG ++ A   F
Sbjct: 528 DSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLF 587

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            S ++  ++TW ++I  Y  HG  K ++E+FE+M S    P+   FL VLSACSH GLV 
Sbjct: 588 NSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVD 647

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG  YF+ M  DY + P  EHY  + DLLGR G L EA+  +  MP+EP     GA +GA
Sbjct: 648 EGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGA 707

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           CK+H ++ LA+ +A+++ ELEP + V + L++N+YA+   W DVAR+R  M      K P
Sbjct: 708 CKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTP 767

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
           G S +++  EIHTF S   +H QA  +YA L     L+EE    G+    D   D
Sbjct: 768 GWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAK---LIEEIKAVGYVPDTDSIHD 819



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 209/408 (51%), Gaps = 10/408 (2%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF SLL+ C    D+  GR +H+ +   G       ++AL ++Y KC    DARRVFD +
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLG 282
             RD V WN +V+ YA N L + A+ +   M+ E G + D  T  S++ +C    +    
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           R++H   ++  FD  V V+T+++D+Y K G +D A +VFDGM  +N VSWN M+ G+ +N
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           GD  EA+ L + M+       +V++ + L +CG L    E R+VH   ++ G+++ +++ 
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NALI  Y KC     A Q F  +     V+W ++I     +G S++++ +F +M    V+
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 463 PDSIAFLEVLSACSHGGLVSEGL--RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           PDS   + ++ A +    +S+ L  R+ +      H+  D    T L D+  + G +  A
Sbjct: 527 PDSFTLVSIIPALAD---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIA 583

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568
             L  S     R   +  +      +GS G  K A E   E++ S  V
Sbjct: 584 RSLFNS----ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV 627


>gi|354805228|gb|AER41643.1| pentatricopeptide [Oryza punctata]
          Length = 468

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/414 (46%), Positives = 270/414 (65%), Gaps = 8/414 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE L RD VLWNVMVSCY+   L
Sbjct: 28  VHPLAVKSGSGSDARVATALADSYAKSGLVDHARRVFDETLLRDQVLWNVMVSCYSSYGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK--------LGRQIHGLVIKQSFD 295
                 VF  MR  G  GD FTFS+L++   +  S          LG  +HG+VI+    
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLLLGSSVHGIVIRLGLH 147

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           LDV+VAT+LV+MYAK G + +A RVFD M  +N VSWN ++V FG++  G+EA  L   M
Sbjct: 148 LDVVVATALVNMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCFGKHDRGKEAFDLFVSM 207

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           ++   CPDE+TLAS+LSSC  ++ + E  Q+HAY +K G+Q FL + NALI AY K G +
Sbjct: 208 MRDRCCPDELTLASLLSSCADMAAANEATQLHAYTVKRGLQDFLQVGNALIMAYGKTGFV 267

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   FG ++ PDLVTW+S++ ++A+ G +K +I +F++ML   +R D IAFL VLSAC
Sbjct: 268 QEATHTFGMIRNPDLVTWSSMVSSFAYLGFAKSAINLFDRMLQQGIRADGIAFLGVLSAC 327

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GL+ +  +YF LM+ D+ I P  +H  CL DLLGR G + +AY+ L +M  +   D 
Sbjct: 328 SHAGLIEDAFKYFLLMVRDHKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDTNVDV 387

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           +GAF+GAC++ G+I LAKWAA +L  L+P  P+NY L+SN YA+   W ++A++
Sbjct: 388 IGAFLGACRMRGNIELAKWAASRLFSLKPDDPINYVLISNTYAAAGDWSELAKM 441



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 153/328 (46%), Gaps = 27/328 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLAVKSGSGSDARVATALADSYAKSGLVDHARRVFDETLLRDQVLWNVMVSCYSSYGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--------IEVGRRLHSFILKV 191
           +    +V    RR        D  TF++LL     +          + +G  +H  ++++
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSCYDHANLLLLLGSSVHGIVIRL 144

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G  L+  V++ALV++Y KCG V +A RVFD ++ R+ V WN ++ C+  +  G  A  +F
Sbjct: 145 GLHLDVVVATALVNMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCFGKHDRGKEAFDLF 204

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M  +    D  T +SL++SC  + ++    Q+H   +K+     + V  +L+  Y K 
Sbjct: 205 VSMMRDRCCPDELTLASLLSSCADMAAANEATQLHAYTVKRGLQDFLQVGNALIMAYGKT 264

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G + +A   F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +L
Sbjct: 265 GFVQEATHTFGMIRNPDLVTWSSMVSSFAYLGFAKSAINLFDRMLQQGIRADGIAFLGVL 324

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFL 399
           S+C            HA  I++  + FL
Sbjct: 325 SACS-----------HAGLIEDAFKYFL 341



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 3/243 (1%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
            L  G  +H  +++LGL   + +   ++++Y KC    +  ++FD M +RN V+WN +I 
Sbjct: 130 LLLLGSSVHGIVIRLGLHLDVVVATALVNMYAKCGQVAEASRVFDAMVLRNTVSWNAIIV 189

Query: 138 --GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
             G  + G      F  M+ D    D +T  SLL +C          +LH++ +K G   
Sbjct: 190 CFGKHDRGKEAFDLFVSMMRDRCCPDELTLASLLSSCADMAAANEATQLHAYTVKRGLQD 249

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
              V +AL+  YGK GFV++A   F  +   DLV W+ MVS +A       AI +F+ M 
Sbjct: 250 FLQVGNALIMAYGKTGFVQEATHTFGMIRNPDLVTWSSMVSSFAYLGFAKSAINLFDRML 309

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNI 314
            +G++ D   F  ++++C   G  +   +   L+++    D        LVD+  + G I
Sbjct: 310 QQGIRADGIAFLGVLSACSHAGLIEDAFKYFLLMVRDHKIDPTPQHLACLVDLLGRAGRI 369

Query: 315 DDA 317
            DA
Sbjct: 370 RDA 372



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 24/200 (12%)

Query: 39  KHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           KHDR      +  S +R+     E T       +  L   A      +  QLH++ +K G
Sbjct: 193 KHDRGKEAFDLFVSMMRDRCCPDELT------LASLLSSCADMAAANEATQLHAYTVKRG 246

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           L + L + N ++  Y K     +    F  +R  ++VTW++++S     G   +    F 
Sbjct: 247 LQDFLQVGNALIMAYGKTGFVQEATHTFGMIRNPDLVTWSSMVSSFAYLGFAKSAINLFD 306

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK------VGFGLNCFVSSALVD 205
           RML   +R D I F  +L AC  A  IE   +    +++          L C     LVD
Sbjct: 307 RMLQQGIRADGIAFLGVLSACSHAGLIEDAFKYFLLMVRDHKIDPTPQHLAC-----LVD 361

Query: 206 LYGKCGFVEDARRVFDEVLC 225
           L G+ G + DA      + C
Sbjct: 362 LLGRAGRIRDAYEFLVNMSC 381


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/554 (35%), Positives = 326/554 (58%), Gaps = 2/554 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ LH + +K    N + + + ++ +Y+K    D+   +F EM +RN+V+W  +I+G++ 
Sbjct: 87  GESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVR 146

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N     YF  M +  V  D  TF+S L+AC  +  +  GR +H   LK GF    FV
Sbjct: 147 AGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFV 206

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ L  +Y KCG ++   R+F+ +  RD+V W  ++         + A+  F  MR   +
Sbjct: 207 ANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDV 266

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + FTF+++++ C TLG  + G Q+H  VI++     + VA S++ MY+K   +D A  
Sbjct: 267 SPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLAST 326

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF G++ ++++SW+TM+ G+ Q G G EA   L  M +    P+E   AS+LS CG+++I
Sbjct: 327 VFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAI 386

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +Q+HA+ +  G++    +++ALIN YSKCGSI  A + F   +  ++V+WT++I  
Sbjct: 387 LEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMING 446

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E+I++F+K+    +RPDS+ F+ VL+ACSH GLV  G  YFN +   + I P
Sbjct: 447 YAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICP 506

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             +HY C+ DLL R G L +A  ++ SMP +         + AC++HG +   K AAEK+
Sbjct: 507 SKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKI 566

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+L+P+  V +  ++N+YA++  W + A +RKMM+     K PG SWI+    +  FVS 
Sbjct: 567 LQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSG 626

Query: 620 DRSHPQAVHMYAML 633
           DRSHP+  ++Y +L
Sbjct: 627 DRSHPEGEYIYDVL 640



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 237/488 (48%), Gaps = 38/488 (7%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP---YFRRMLLD-N 157
           N VL   VK    ++  +LFD+M  R+ ++W T+ISG +N G N T     F +M ++  
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVN-GMNTTEALSLFSKMWVEPG 63

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           + +D    +  L+AC     +  G  LH + +K  F  + FV SALVD+Y K G V++  
Sbjct: 64  LHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            VF E+  R++V W  +++          A+A F+ M ++ +  D +TFSS + +C   G
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           +   GR+IH   +K+ F     VA +L  MY K G +D   R+F+ MT ++VVSW T+++
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
              Q G    AVK  R M +    P+E T A+++S C +L       Q+HA+ I+ G+  
Sbjct: 244 SNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVD 303

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            LS+ N+++  YSKC  +  A   F  +   D+++W+++I  YA  G  +E+ +    M 
Sbjct: 304 SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMR 363

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYF----------NLMISDY------------ 495
               RP+  AF  VLS C +  ++ +G +            N M+               
Sbjct: 364 REGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIK 423

Query: 496 ---HILPDSEH-----YTCLTDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIGACK 544
               I  ++E+     +T + +     G   EA DL   +P   + P S T  A + AC 
Sbjct: 424 EASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACS 483

Query: 545 VHGSIGLA 552
             G + L 
Sbjct: 484 HAGLVDLG 491


>gi|24059871|dbj|BAC21338.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509918|dbj|BAD30218.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 459

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/418 (46%), Positives = 274/418 (65%), Gaps = 9/418 (2%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE   RD VLWNVMVSCY+ + L
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS---------KLGRQIHGLVIKQSF 294
                 VF  MR  G  GD FTFS+L++   +  SS          LG  +HG+VI+   
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIRLGL 147

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            LDV+VAT+L+DMYAK G + +A RVFD M  +N VSWN ++V +G++  G+EA  L   
Sbjct: 148 HLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVS 207

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M++  FCPDE+TLAS+LSSC  ++ + E  Q+HAY ++ G+Q FL + NALI AY K G 
Sbjct: 208 MMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGF 267

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  A + FG +  PDLVTW+S++ ++A+ GL+K +I++F++ML   +R D IAFL VLSA
Sbjct: 268 VQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSA 327

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           CSH GL+ +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D
Sbjct: 328 CSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVD 387

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
            +GAF+GAC++ G+I  AKWAA +L  L+P  P+NY L+SN YA+   W ++A+  K+
Sbjct: 388 VIGAFLGACRMRGNIESAKWAASRLFSLKPDDPINYLLISNTYAAAGDWNELAKWNKI 445



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 159/329 (48%), Gaps = 28/329 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLL--RA-----CVQADDI--EVGRRLHSFILK 190
           +    +V    RR        D  TF++LL  RA     C    ++   +G  +H  +++
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIR 144

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
           +G  L+  V++AL+D+Y KCG V +A RVFD ++ R+ V WN ++ CY  +  G  A  +
Sbjct: 145 LGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDL 204

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F  M   G   D  T +SL++SC  + ++    Q+H   +++     + V  +L+  Y K
Sbjct: 205 FVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGK 264

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
           NG + +A R F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +
Sbjct: 265 NGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGV 324

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           LS+C            HA  I++G + FL
Sbjct: 325 LSACS-----------HAGLIEDGFKYFL 342



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI- 136
            L  G  +H  +++LGL   + +   +L +Y KC    +  ++FD M +RN V+WN +I 
Sbjct: 131 LLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIV 190

Query: 137 -SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
             G  + G      F  M+      D +T  SLL +C          +LH++ ++ G   
Sbjct: 191 CYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQD 250

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
              V +AL+  YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M 
Sbjct: 251 FLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRML 310

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGN 313
            +G++ D   F  ++++C   G  + G + + L++ + + +D        LVD+  + G 
Sbjct: 311 QQGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGR 369

Query: 314 IDDA 317
           I DA
Sbjct: 370 IRDA 373



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
            +  QLH++ ++ GL + L + N ++  Y K     + ++ F  +   ++VTW++++S  
Sbjct: 234 NEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSF 293

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G   +    F RML   +R D I F  +L AC  A  IE G + +  ++   + ++ 
Sbjct: 294 AYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDP 352

Query: 198 FVS--SALVDLYGKCGFVEDARRVFDEVLC 225
                + LVDL G+ G + DA      + C
Sbjct: 353 TPQHLACLVDLLGRAGRIRDAYEFLVNMSC 382


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 341/606 (56%), Gaps = 2/606 (0%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I + T      +   L+  A+   L+QG+++H+ I+K G+     L+N +L +Y KC + 
Sbjct: 88  ILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSL 147

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRAC 172
            D  ++FD +R RNIV+W  +I   +    N+  Y  +  M L   + D +TF SLL A 
Sbjct: 148 TDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAF 207

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
              + ++VG+++H  I K G  L   V ++LV +Y KCG +  A+ +FD++  +++V W 
Sbjct: 208 TNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWT 267

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           ++++ YA     D A+ +   M+   +  +  T++S++  C T  + + G+++H  +I+ 
Sbjct: 268 LLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQS 327

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            +  ++ V  +L+ MY K G + +A ++F  +  ++VV+W  MV G+ Q G   EA+ L 
Sbjct: 328 GYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLF 387

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           R M Q    PD++T  S L+SC S +   E + +H   +  G    + +++AL++ Y+KC
Sbjct: 388 RRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKC 447

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GS+  A   F  + E ++V WT++I   A HG  +E++E FE+M    ++PD + F  VL
Sbjct: 448 GSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVL 507

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SAC+H GLV EG ++F  M  DY I P  EHY+C  DLLGR G L EA +++ +MP +P 
Sbjct: 508 SACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPG 567

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
               GA + AC++H  +   + AAE +L+L+P     Y  +SN+YA+   + D  ++R++
Sbjct: 568 PSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQV 627

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL 652
           M      K PG SWIE+ G++H F   D+SHP+A  +YA L  +   ++E         +
Sbjct: 628 MEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFV 687

Query: 653 DKEMDE 658
             ++DE
Sbjct: 688 LHDVDE 693



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 203/395 (51%), Gaps = 2/395 (0%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M+L   R+    F  LL+ C +   +E GR +H+ ILK G   N ++ + L+ +Y KCG 
Sbjct: 87  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 146

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           + DARRVFD +  R++V W  M+  +        A   +  M+L G K D  TF SL+N+
Sbjct: 147 LTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNA 206

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
                  ++G+++H  + K   +L+  V TSLV MYAK G+I  A  +FD +  KNVV+W
Sbjct: 207 FTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTW 266

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             ++ G+ Q G    A++LL  M Q    P+++T  SIL  C +       ++VH Y I+
Sbjct: 267 TLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQ 326

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           +G    + + NALI  Y KCG +  A + FG +   D+VTWT+++  YA  G   E+I++
Sbjct: 327 SGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDL 386

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F +M    ++PD + F   L++CS    + EG      ++   + L D    + L  +  
Sbjct: 387 FRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL-DVYLQSALVSMYA 445

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           + G + +A  +   M  E       A I  C  HG
Sbjct: 446 KCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHG 479



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 5/284 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ + N M L+G +     F  L+  C  L S + GR++H  ++K     +  +  +L+ 
Sbjct: 80  ALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLS 139

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G++ DA RVFDG+  +N+VSW  M+  F       EA K    M      PD+VT
Sbjct: 140 MYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVT 199

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             S+L++  +  +    ++VH    K G++    +  +L+  Y+KCG I+ A   F  + 
Sbjct: 200 FVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLP 259

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E ++VTWT +I  YA  G    ++E+ EKM    V P+ I +  +L  C+    +  G +
Sbjct: 260 EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKK 319

Query: 487 YFNLMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMP 528
               +I   +     E +    L  +  + G L EA  L   +P
Sbjct: 320 VHRYIIQSGY---GREIWVVNALITMYCKCGGLKEARKLFGDLP 360


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 344/587 (58%), Gaps = 32/587 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GKQLH + +++G   K    N ++ +Y K    DD + LF+    R++V+WNT+IS 
Sbjct: 213 LRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISS 271

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL- 195
                       +FR M+L+ V LD +T  S+L AC   + ++VG+ +H+++L+    + 
Sbjct: 272 FSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIE 331

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLM 254
           N FV SALVD+Y  C  VE  RRVFD +L R + LWN M+S YA N L + A+ +F  ++
Sbjct: 332 NSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMI 391

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           ++ G+  +  T +S++ +C    +      IHG  +K  F  D  V  +L+DMY++ G +
Sbjct: 392 KVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKM 451

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ----------------- 357
           D +  +FD M  ++ VSWNTM+ G+  +G    A+ LL +M +                 
Sbjct: 452 DISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKG 511

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           G + P+ +TL ++L  C +L+   + +++HAYAI+N + + +++ +AL++ Y+KCG +  
Sbjct: 512 GPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNL 571

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-----PDSIAFLEVL 472
           + + F  +   +++TW  +I A   HG  +E++E+F+ M++ A R     P+ + F+ V 
Sbjct: 572 SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVF 631

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +ACSH GL+SEGL  F  M  D+ + P S+HY C+ DLLGR G L EAY+L+ +MP E  
Sbjct: 632 AACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAE-- 689

Query: 533 SDTLGAF---IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
            D +GA+   +GAC++H ++ L + AA+ LL LEP+   +Y L+SN+Y+S   W     +
Sbjct: 690 FDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEV 749

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           RK MR     K PGCSWIE   E+H F++ D SHPQ+  ++  L T+
Sbjct: 750 RKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETL 796



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 257/523 (49%), Gaps = 37/523 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           +   LK  +    L+ G+Q+H+  +K G   + +++ N ++++Y KC    D+ K+FD +
Sbjct: 95  FPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRI 154

Query: 125 RVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ---ADDIE 179
             R+ V+WN+ I+ +            FR M ++N+ L   T  S+  AC        + 
Sbjct: 155 TDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLR 214

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G++LH + L+VG     F ++AL+ +Y K G V+D++ +F+  + RD+V WN M+S ++
Sbjct: 215 LGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFS 273

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--D 297
            +     A+A F LM LEG++ D  T +S++ +C  L    +G++IH  V++ + DL  +
Sbjct: 274 QSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN-DLIEN 332

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             V ++LVDMY     ++   RVFD +  + +  WN M+ G+ +NG   +A+ L  +M++
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 392

Query: 358 -GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P+  T+AS++ +C           +H YA+K G +    ++NAL++ YS+ G + 
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMD 452

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-----------------LSH 459
            +   F S++  D V+W ++I  Y   G    ++ +  +M                    
Sbjct: 453 ISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGG 512

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
             +P++I  + VL  C+    +++G       I +  +  D    + L D+  + G L  
Sbjct: 513 PYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNL 571

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           +  +   MP      T    I AC +HG         E+ LEL
Sbjct: 572 SRRVFNEMP-NKNVITWNVLIMACGMHGK-------GEEALEL 606



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 197/391 (50%), Gaps = 12/391 (3%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF-VSSALVDLYG 208
           +  M +   R D+  F ++L+A     D++ G ++H+  +K G+G +   V++ LV++YG
Sbjct: 80  YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KCG + D  +VFD +  RD V WN  ++        + A+  F  M++E M+   FT  S
Sbjct: 140 KCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVS 199

Query: 269 LVNSCGTLG---SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +  +C  LG     +LG+Q+HG  ++   D       +L+ MYAK G +DD+  +F+   
Sbjct: 200 VALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFV 258

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +++VSWNTM+  F Q+    EA+   R M+      D VT+AS+L +C  L      ++
Sbjct: 259 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318

Query: 386 VHAYAIKNGVQAFLS-IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           +HAY ++N      S + +AL++ Y  C  +    + F  +    +  W ++I  YA +G
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378

Query: 445 LSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVS--EGLRYFNLMISDYHILPDS 501
           L ++++ +F +M+  A + P++     V+ AC H    S  E +  + + +       D 
Sbjct: 379 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLG---FKEDR 435

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
                L D+  R+G +  +  +  SM +  R
Sbjct: 436 YVQNALMDMYSRMGKMDISETIFDSMEVRDR 466



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLV 305
           AI+ +  M + G + D F F +++ +   L   K G QIH   +K  +    V VA +LV
Sbjct: 76  AISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLV 135

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +MY K G I D C+VFD +T ++ VSWN+ +    +     +A++  R M   +      
Sbjct: 136 NMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSF 195

Query: 366 TLASILSSCGSLSISCETR---QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           TL S+  +C +L +    R   Q+H Y+++ G Q   +  NAL+  Y+K G +  +   F
Sbjct: 196 TLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFT-NNALMAMYAKLGRVDDSKALF 254

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            S  + D+V+W ++I +++      E++  F  M+   V  D +    VL ACSH
Sbjct: 255 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +++  SW   +    ++ D REA+    +M      PD     ++L +   L       Q
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 386 VHAYAIKNGV-QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           +HA A+K G   + +++ N L+N Y KCG I    + F  + + D V+W S I A     
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFE 173

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++++E F  M    +   S   + V  ACS+ G V  GLR
Sbjct: 174 KWEQALEAFRAMQMENMELSSFTLVSVALACSNLG-VMHGLR 214



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 14/214 (6%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    + +GK++H++ ++  L + +++ + ++ +Y KC   +   ++F+EM  +N++TWN
Sbjct: 529 AALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWN 588

Query: 134 TLI--SGIINCGGNVTPYFRRMLLD-----NVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            LI   G+   G      F+ M+ +       + + +TF ++  AC  +  I  G  L  
Sbjct: 589 VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF- 647

Query: 187 FILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMV-SCYALN 241
           + +K   G+       + +VDL G+ G +E+A  + + +      +  W+ ++ +C    
Sbjct: 648 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 707

Query: 242 CLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
            +  G +A  NL+ LE  +   Y   S++ +S G
Sbjct: 708 NVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAG 741


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/570 (34%), Positives = 330/570 (57%), Gaps = 3/570 (0%)

Query: 66   YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
            ++  LK  A  G +++ K++H +++KLG  +  ++ N ++  Y K    +    LFDE+ 
Sbjct: 473  FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 532

Query: 126  VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              ++V+WN++I+G +  G  GN    F +ML+  V +D  T  S+L A     ++ +GR 
Sbjct: 533  EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRA 592

Query: 184  LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            LH F +K  F      S+ L+D+Y KCG +  A  VF ++    +V W   ++ Y    L
Sbjct: 593  LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGL 652

Query: 244  GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               AI +F+ M+ +G++ D +T +S+V++C    S   GR +H  VIK     ++ V  +
Sbjct: 653  YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 712

Query: 304  LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            L++MYAK G++++A  VF  +  K++VSWNTM+ G+ QN    EA++L  DM Q  F PD
Sbjct: 713  LINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPD 771

Query: 364  EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            ++T+A +L +C  L+   + R++H + ++ G  + L +  AL++ Y+KCG +  A   F 
Sbjct: 772  DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFD 831

Query: 424  SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             + + DL++WT +I  Y  HG   E+I  F +M    + PD  +F  +L+ACSH GL++E
Sbjct: 832  MIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNE 891

Query: 484  GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
            G ++FN M ++  + P  EHY C+ DLL R+G L +AY  + SMPI+P +   G  +  C
Sbjct: 892  GWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGC 951

Query: 544  KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            ++H  + LA+  AE + ELEP     Y +++NVYA    W +V +LRK M+     + PG
Sbjct: 952  RIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPG 1011

Query: 604  CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            CSWIE+ G+ + FV+ +  HPQA  +  +L
Sbjct: 1012 CSWIEVGGKFNIFVAGNSKHPQAKRIDVLL 1041



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 262/520 (50%), Gaps = 31/520 (5%)

Query: 27  YQNQTTTITNAQ--KHDRSVLSSQLRNSGTIHESTHSAH---SFYSQALKVSAKFGFLQQ 81
           + N T ++T  Q  K ++      LRN+  +   + S     + Y   L++ A+   L+ 
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLED 387

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK++HS I+  G+    +L  +++ +YV C       K+FD++    +  WN L+S    
Sbjct: 388 GKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 447

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F++M    V  +  TF  +L+       ++  +R+H ++LK+GFG N  V
Sbjct: 448 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 507

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+  Y K G VE A  +FDE+   D+V WN M++   +N      + +F  M + G+
Sbjct: 508 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 567

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  S++ +   +G+  LGR +HG  +K  F  +V+ + +L+DMY+K GN++ A  
Sbjct: 568 EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 627

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  M    +VSW + +  + + G   +A+ L  +M      PD  T+ SI+ +C   S 
Sbjct: 628 VFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 687

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + R VH+Y IKNG+ + L + NALIN Y+KCGS+  A   F  +   D+V+W ++IG 
Sbjct: 688 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 747

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYF 488
           Y+ + L  E++E+F  M     +PD I    VL AC+           HG ++  G  YF
Sbjct: 748 YSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRG--YF 804

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               SD H+         L D+  + GLLV A  L   +P
Sbjct: 805 ----SDLHVA------CALVDMYAKCGLLVLAQLLFDMIP 834


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/653 (33%), Positives = 342/653 (52%), Gaps = 76/653 (11%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           +H+ ++K G  N++ +QN+++  Y KC + +D  +LFD+M  RN+ TWN++++G+   G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 144 --------------------------------GNVTPYFRRMLLDNVRLDHITFNSLLRA 171
                                                YF  M  +   L+  TF S L A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C   +D+  G ++HS I K     + ++ SALVD+Y KCG V DA++VFDE+  R++V W
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +++CY  N     A+ VF +M    ++ D  T +S++++C +L + K+G+++H  V+K
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 292 -QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-------------------------- 324
                 D++++ + VDMYAK   I +A  +FD M                          
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARL 341

Query: 325 -----TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
                  +NVVSWN ++ G+ QNG+  EA+ L   + + S CP   T A+IL +C  L+ 
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLAD 401

Query: 380 SCETRQVHAYAIKNGVQAFLSIE-------NALINAYSKCGSIAGALQCFGSVKEPDLVT 432
                Q H + +K+G + F S E       N+LI+ Y KCG +      F  + E D V+
Sbjct: 402 LHLGMQAHVHVLKHGFK-FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I  +A +G   E++E+F +ML    +PD I  + VLSAC H G V EG  YF+ M 
Sbjct: 461 WNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMT 520

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
            D+ + P  +HYTC+ DLLGR G L EA  ++  MP++P S   G+ + ACKVH +I L 
Sbjct: 521 RDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLG 580

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           K+ AEKL E+E S    Y L+SN+YA    W D   +RK+MR     K PGCSWI+I G 
Sbjct: 581 KYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGH 640

Query: 613 IHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL-DKEMDECT--LW 662
            H F+  D+SHP+   ++++L  +   M +         L  +EMD  +  LW
Sbjct: 641 AHVFMVKDKSHPRKKQIHSLLDILIAEMRQKQDHAETGSLSSEEMDYSSSLLW 693



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 209/420 (49%), Gaps = 42/420 (10%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   +    + +G Q+HS I K    + + + + ++ +Y KC   +D +++FDEM 
Sbjct: 155 FASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMG 214

Query: 126 VRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+WN+LI+     G  V     F+ ML   V  D +T  S++ AC     I+VG+ 
Sbjct: 215 DRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQE 274

Query: 184 LHSFILKVGFGLN-CFVSSALVDLYGKCGFVEDARRVFD--------------------- 221
           +H+ ++K+    N   +S+A VD+Y KC  +++AR +FD                     
Sbjct: 275 VHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAA 334

Query: 222 ----------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                     ++  R++V WN +++ Y  N   + A+++F L++ E +   ++TF++++ 
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILK 394

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDL------DVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +C  L    LG Q H  V+K  F        D+ V  SL+DMY K G +++   VF  M 
Sbjct: 395 ACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            ++ VSWN M++GF QNG G EA++L R+ML     PD +T+  +LS+CG      E R 
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRH 514

Query: 386 VHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             +   ++ GV         +++   + G +  A      +  +PD V W S++ A   H
Sbjct: 515 YFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVH 574



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 196/374 (52%), Gaps = 40/374 (10%)

Query: 165 FNSLLRACVQADDIEVGRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           F  LL +C++     +  R +H+ ++K GF    F+ + L+D Y KCG +ED R++FD++
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81

Query: 224 LC-------------------------------RDLVLWNVMVSCYALNCLGDGAIAVFN 252
                                            RD   WN MVS +A +   + A+  F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
           +M  EG   + +TF+S +++C  L     G QIH L+ K     DV + ++LVDMY+K G
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           N++DA +VFD M  +NVVSWN+++  + QNG   EA+K+ + ML+    PDEVTLAS++S
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 373 SCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           +C SLS     ++VHA  +K + ++  + + NA ++ Y+KC  I  A   F S+   +++
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
             TS++  YA    +K +  +F KM    V    +++  +++  +  G   E L  F L+
Sbjct: 322 AETSMVSGYAMAASTKAARLMFTKMAERNV----VSWNALIAGYTQNGENEEALSLFCLL 377

Query: 492 ISDYHILPDSEHYT 505
             +  + P   HYT
Sbjct: 378 KRE-SVCP--THYT 388



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 14/242 (5%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC------NKLSLQNQVLHVYVK 110
           ES    H  ++  LK  A    L  G Q H H++K G        + + + N ++ +YVK
Sbjct: 380 ESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query: 111 CKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG-GN-VTPYFRRMLLDNVRLDHITFNSL 168
           C   ++   +F +M  R+ V+WN +I G    G GN     FR ML    + DHIT   +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGV 499

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR 226
           L AC  A  +E GR   S + +  FG+       + +VDL G+ GF+E+A+ + +E+  +
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTR-DFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQ 558

Query: 227 -DLVLW-NVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGR 283
            D V+W +++ +C     +  G      L  +E    G Y   S++    G  G +   R
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVR 618

Query: 284 QI 285
           ++
Sbjct: 619 KL 620


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/554 (35%), Positives = 318/554 (57%), Gaps = 2/554 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ LH + +K GL N + + + +L +Y K     +  ++F EM +RN+V+W  +I+G++ 
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N     YF  M    V  D  TF   L+AC  +  +  GR +H+  +K GF ++ FV
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ L  +Y KCG +E    +F+++  RD+V W  +++        + A+  F  MR   +
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV 314

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +TF+++++ C  L   + G Q+H L++       + V  S++ MYAK G +  +  
Sbjct: 315 SPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSV 374

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F  MT +++VSW+T++ G+ Q G   EA +LL  M      P E  LAS+LS+CG+++I
Sbjct: 375 IFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAI 434

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +Q+HAY +  G++    + +ALIN Y KCGSI  A + F + +  D+V+WT++I  
Sbjct: 435 LEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMING 494

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E I++FEK+    +RPDS+ F+ VLSACSH GLV  G  YFN M   Y I P
Sbjct: 495 YAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISP 554

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ DLL R G L +A  ++ +MP           + AC+VHG +   +  AE++
Sbjct: 555 SKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERI 614

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+LEP+    +  ++N+YAS+  W + A +RK+M+     K PG SWI++   +  FV+ 
Sbjct: 615 LQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAG 674

Query: 620 DRSHPQAVHMYAML 633
           DRSHPQ   +Y ML
Sbjct: 675 DRSHPQGEDIYNML 688



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 240/508 (47%), Gaps = 39/508 (7%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLL 155
           L   N+ L   VK     +  ++FD+M  ++ ++W TLISG +N   +      F+ M +
Sbjct: 49  LPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRV 108

Query: 156 DN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           ++ +R+D    +   +AC    D+  G  LH + +K G   + FV SAL+D+Y K G + 
Sbjct: 109 ESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           + RRVF E+  R++V W  +++          A+  F+ M    ++ D +TF+  + +C 
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
             G+   GR+IH   +K+ FD+   VA +L  MY K G ++    +F+ M+ ++VVSW T
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTT 288

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           ++    Q G    AV+    M +    P+E T A+++S C +L+      Q+HA  +  G
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLG 348

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           + A LS+EN+++  Y+KCG +  +   F  +   D+V+W++II  Y   G   E+ E+  
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLS 408

Query: 455 KMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDY-------- 495
            M     +P   A   VLSAC            H  ++S GL +  +++S          
Sbjct: 409 WMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCG 468

Query: 496 ------HILPDSEH-----YTCLTDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIG 541
                  I   +E+     +T + +     G   E  DL   +P   + P S T    + 
Sbjct: 469 SIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528

Query: 542 ACKVHGSIGLAKW---AAEKLLELEPSK 566
           AC   G + L      A  K  ++ PSK
Sbjct: 529 ACSHAGLVDLGFHYFNAMSKKYQISPSK 556



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 200/396 (50%), Gaps = 4/396 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ ALK  A  G L  G+++H+  MK G      + N +  +Y KC   +    LF++M 
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +R++V+W T+I+ ++  G        F RM   +V  +  TF +++  C     IE G +
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ IL +G   +  V ++++ +Y KCG +  +  +F E+  RD+V W+ +++ Y     
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGH 399

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A  + + MR+EG K   F  +S++++CG +   + G+Q+H  V+    +   +V ++
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MY K G+I++A R+FD     ++VSW  M+ G+ ++G  RE + L   + +    PD
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 364 EVTLASILSSCGSLS-ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
            VT   +LS+C     +       +A + K  +         +I+   + G ++ A    
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI 579

Query: 423 GSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            ++    D V W++++ A   HG  +      E++L
Sbjct: 580 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 615



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 167/370 (45%), Gaps = 10/370 (2%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFS 267
           K G + +ARR+FD++  +D + W  ++S Y        A+ +F  MR+E G++ D F  S
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
               +CG       G  +HG  +K      V V ++L+DMY KNG I +  RVF  M  +
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           NVVSW  ++ G  + G  +EA+    +M +     D  T A  L +C         R++H
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A A+K G      + N L   Y+KCG +   L  F  +   D+V+WT+II      G  +
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
            +++ F +M    V P+   F  V+S C++   +  G +   L++        S   + +
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 508 TDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
           T +  + G L  +  +   M    I   S  +  +     V  +  L  W     + +E 
Sbjct: 361 T-MYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSW-----MRMEG 414

Query: 565 SKPVNYALVS 574
            KP  +AL S
Sbjct: 415 PKPTEFALAS 424



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 165/322 (51%), Gaps = 12/322 (3%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    ++ G+QLH+ I+ LGL   LS++N ++ +Y KC        +F EM  R+IV+W+
Sbjct: 329 ANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWS 388

Query: 134 TLISGIINCGGNVTPYFR---RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           T+I+G    GG+V+  F     M ++  +       S+L AC     +E G++LH+++L 
Sbjct: 389 TIIAGYXQ-GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS 447

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
           +G      V SAL+++Y KCG +E+A R+FD     D+V W  M++ YA +      I +
Sbjct: 448 IGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDL 507

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSLVDMYA 309
           F  +   G++ D  TF  ++++C   G   LG    + +  K            ++D+  
Sbjct: 508 FEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLC 567

Query: 310 KNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD----GREAVKLLRDMLQGSFCPDE 364
           + G + DA  + + M   ++ V W+T++     +GD     R A ++L+  L+ +     
Sbjct: 568 RAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQ--LEPNCAGTH 625

Query: 365 VTLASILSSCGSLSISCETRQV 386
           +TLA+I +S G    + + R++
Sbjct: 626 ITLANIYASKGKWREAADIRKL 647


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 329/586 (56%), Gaps = 35/586 (5%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNV 158
           N +L  Y K     +ME++F  M  R++V+WN+LIS     G    +V  Y   +     
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            L+ I  +++L    +   + +G ++H  ++K GF    FV S LVD+Y K G V  AR+
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 219 VFDEVLCRDLVL-------------------------------WNVMVSCYALNCLGDGA 247
            FDE+  +++V+                               W  M++ +  N L   A
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           I +F  MRLE ++ D +TF S++ +CG + + + G+Q+H  +I+  +  ++ V ++LVDM
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDM 318

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K  +I  A  VF  M  KNVVSW  M+VG+GQNG   EAVK+  DM      PD+ TL
Sbjct: 319 YCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL 378

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S++SSC +L+   E  Q H  A+ +G+ +F+++ NAL+  Y KCGSI  + + F  +  
Sbjct: 379 GSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSY 438

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D V+WT+++  YA  G + E++ +FE ML+H  +PD + F+ VLSACS  GLV +G + 
Sbjct: 439 VDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQI 498

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  MI ++ I+P  +HYTC+ DL  R G L EA   +  MP  P +    + + +C+ H 
Sbjct: 499 FESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHR 558

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ + KWAAE LL+LEP    +Y L+S++YA++  W +VA LRK MRD    K PGCSWI
Sbjct: 559 NMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWI 618

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTV-FGLMEENNVSGHCNVL 652
           +   ++H F + D+S+P +  +Y+ L  + + +++E  V    +VL
Sbjct: 619 KYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVL 664



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 207/414 (50%), Gaps = 39/414 (9%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L +++K G +  G Q+H H++K G  + + + + ++ +Y K        + FDEM  
Sbjct: 146 STMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPE 205

Query: 127 RNIVTWNTLISGIINCGG---------------------------------NVTPYFRRM 153
           +N+V +NTLI+G++ C                                        FR M
Sbjct: 206 KNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM 265

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
            L+N+ +D  TF S+L AC     ++ G+++H++I++  +  N FV SALVD+Y KC  +
Sbjct: 266 RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSI 325

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           + A  VF ++ C+++V W  M+  Y  N   + A+ +F  M+  G++ D FT  S+++SC
Sbjct: 326 KSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSC 385

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
             L S + G Q H   +       + V+ +LV +Y K G+I+D+ R+F  M+  + VSW 
Sbjct: 386 ANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWT 445

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
            +V G+ Q G   E ++L   ML   F PD+VT   +LS+C    +  +  Q+    IK 
Sbjct: 446 ALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKE 505

Query: 394 GVQAFLSIEN---ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
                + IE+    +I+ +S+ G +  A +    +   PD + W S++ +  FH
Sbjct: 506 --HRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFH 557



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 173/355 (48%), Gaps = 36/355 (10%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            N+L+ A  + D I   RR+   + +     N +  + L+  Y K   + +  RVF  + 
Sbjct: 47  LNNLVSAYAKFDRITYARRVFDQMPQ----RNLYSWNTLLSSYSKLACLPEMERVFHAMP 102

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGR 283
            RD+V WN ++S YA       ++  +NLM   G    +    S+++      G   LG 
Sbjct: 103 TRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGL 162

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV------------- 330
           Q+HG V+K  F   V V + LVDMY+K G +  A + FD M  KNVV             
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCS 222

Query: 331 ------------------SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
                             SW  M+ GF QNG  REA+ L R+M   +   D+ T  S+L+
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +CG +    E +QVHAY I+   Q  + + +AL++ Y KC SI  A   F  +   ++V+
Sbjct: 283 ACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVS 342

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           WT+++  Y  +G S+E++++F  M ++ + PD      V+S+C++   + EG ++
Sbjct: 343 WTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQF 397



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 65/298 (21%)

Query: 264 FTFSSLVNS-CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           F   SL N  C  L   +  ++IH  +IK   + ++ +  +LV  YAK   I  A RVFD
Sbjct: 9   FNSMSLSNHYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFD 68

Query: 323 GMTAKNV-------------------------------VSWNTMVVGFGQNGDGREAVKL 351
            M  +N+                               VSWN+++  +   G   ++VK 
Sbjct: 69  QMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKA 128

Query: 352 LRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
              ML  G F  + + L+++L             QVH + +K G Q+++ + + L++ YS
Sbjct: 129 YNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYS 188

Query: 411 KCG----------------------SIAGALQC---------FGSVKEPDLVTWTSIIGA 439
           K G                       IAG ++C         F  ++E D ++WT++I  
Sbjct: 189 KTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAG 248

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-SDYH 496
           +  +GL +E+I++F +M    +  D   F  VL+AC     + EG +    +I +DY 
Sbjct: 249 FTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQ 306


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 329/557 (59%), Gaps = 5/557 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQ+H   +K G    +S+   ++ +Y+K ++ +D E++FDEMRV+N+V+W +L++G   
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N      F +M L+ ++ +  TF ++L        +E G ++H+ ++K G     FV
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +++V++Y K   V DA+ VFD +  R+ V WN M++ +  N L   A  +F  MRLEG+
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K     F++++  C  +      +Q+H  VIK   D D+ + T+L+  Y+K   IDDA +
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 320 VFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSL 377
           +F  M   +NVVSW  ++ G+ QNG    A+ L   M  +    P+E T +S+L++C + 
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAP 410

Query: 378 SISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           + S E  +Q H+ +IK+G    L + +AL+  Y+K G+I  A + F    + DLV+W S+
Sbjct: 411 TASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSM 470

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG  K+S+++FE+M S  +  D I F+ V+SAC+H GLV+EG RYF+LM+ DYH
Sbjct: 471 ISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYH 530

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  EHY+C+ DL  R G+L +A DL+  MP    +      + AC+VH ++ L + AA
Sbjct: 531 IVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAA 590

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           EKL+ L+P     Y L+SN+YA+   W + A++RK+M      K  G SWIE+  +  +F
Sbjct: 591 EKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSF 650

Query: 617 VSSDRSHPQAVHMYAML 633
           ++ D SHPQ+  +Y  L
Sbjct: 651 MAGDLSHPQSDRIYLKL 667



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 140/262 (53%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           ++++FDE   + L   N ++  ++ N     A+ +F  +R  G   D  + S ++  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L    +G+Q+H   IK  F  DV V TSLVDMY K  +++D  RVFD M  KNVVSW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ QNG   +A+KL   M      P+  T A++L    +     +  QVH   IK+G+
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + + + N+++N YSK   ++ A   F S++  + V+W S+I  +  +GL  E+ E+F +
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 456 MLSHAVRPDSIAFLEVLSACSH 477
           M    V+     F  V+  C++
Sbjct: 285 MRLEGVKLTQTIFATVIKLCAN 306



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 90/174 (51%)

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD    + +   N ++  F +N   +EA+ L   + +     D  +L+ +L  CG L 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                +QVH   IK G    +S+  +L++ Y K  S+    + F  ++  ++V+WTS++ 
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            Y  +GL+++++++F +M    ++P+   F  VL   +  G V +G++   ++I
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVI 220


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/586 (34%), Positives = 334/586 (56%), Gaps = 6/586 (1%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            GK +H  I++ G+ +   L N ++++Y +C +  + + +F+  R R+I++WN++I+G   
Sbjct: 505  GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 142  CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
             G     Y  F  M  + +  D ITF S+L  C   + +E+GR++H  I++ G  L+  +
Sbjct: 565  HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 200  SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
             +AL+++Y +CG ++DA  VF  +  R+++ W  M+  +A       A  +F  M+ +G 
Sbjct: 625  GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 260  KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
            K    TFSS++ +C +      G+++   ++   ++LD  V  +L+  Y+K+G++ DA +
Sbjct: 685  KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARK 744

Query: 320  VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
            VFD M  ++++SWN M+ G+ QNG G  A++    M +     ++ +  SIL++C S S 
Sbjct: 745  VFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSA 804

Query: 380  SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
              E ++VHA  +K  +Q  + +  ALI+ Y+KCGS+  A + F +  E ++VTW ++I A
Sbjct: 805  LEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINA 864

Query: 440  YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
            YA HGL+ ++++ F  M    ++PD   F  +LSAC+H GLV EG R F+ + S + + P
Sbjct: 865  YAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSP 924

Query: 500  DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
              EHY CL  LLGR G   EA  L+  MP  P +      +GAC++HG++ LA+ AA   
Sbjct: 925  TIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNA 984

Query: 560  LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
            L+L    P  Y L+SNVYA+   W DVA++R++M      K PG SWIE+   IH F+++
Sbjct: 985  LKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAA 1044

Query: 620  DRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV----LDKEMDECTL 661
            DRSHP+   +Y  L  +   ME    S         LDKE  E +L
Sbjct: 1045 DRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSL 1090



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/502 (29%), Positives = 262/502 (52%), Gaps = 9/502 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           Q+R+ G +   T      Y   L   +    L  G+ +HSHI ++G  + + + N ++ +
Sbjct: 375 QMRSDGVVMNRT-----TYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISM 429

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y +C       +LF+ M  R++++WN +I+G       G     +++M  + V+   +TF
Sbjct: 430 YARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTF 489

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
             LL AC  +     G+ +H  IL+ G   N  +++AL+++Y +CG + +A+ VF+    
Sbjct: 490 LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRA 549

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           RD++ WN M++ +A +   + A  +F  M+ EG++ D  TF+S++  C    + +LGRQI
Sbjct: 550 RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI 609

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L+I+    LDV +  +L++MY + G++ DA  VF  +  +NV+SW  M+ GF   G+ 
Sbjct: 610 HMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGED 669

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           R+A +L   M    F P + T +SIL +C S +   E ++V A+ + +G +    + NAL
Sbjct: 670 RKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNAL 729

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+AYSK GS+  A + F  +   D+++W  +I  YA +GL   +++   +M    V  + 
Sbjct: 730 ISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNK 789

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
            +F+ +L+ACS    + EG R  +  I    +  D      L  +  + G L EA ++  
Sbjct: 790 FSFVSILNACSSFSALEEGKR-VHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFD 848

Query: 526 SMPIEPRSDTLGAFIGACKVHG 547
           +   E    T  A I A   HG
Sbjct: 849 NF-TEKNVVTWNAMINAYAQHG 869



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 240/448 (53%), Gaps = 3/448 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L + K++H+ +++ G+   + L N ++++YVKC++  D  ++F +M  R++++WN+LIS 
Sbjct: 98  LAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISC 157

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G     +  F  M         IT+ S+L AC    ++E G+++HS I++ G+  +
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRD 217

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++L+++YGKC  +  AR+VF  +  RD+V +N M+  YA     +  I +F  M  
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+  D  T+ +L+++  T      G++IH L + +  + D+ V T+L  M+ + G++  
Sbjct: 278 EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAG 337

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +  +    ++VV +N ++    Q+G   EA +    M       +  T  S+L++C +
Sbjct: 338 AKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACST 397

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                    +H++  + G  + + I N+LI+ Y++CG +  A + F ++ + DL++W +I
Sbjct: 398 SKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAI 457

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA      E+++++++M S  V+P  + FL +LSAC++    S+G +  +  I    
Sbjct: 458 IAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG-KMIHEDILRSG 516

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           I  +      L ++  R G ++EA ++ 
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVF 544



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 239/455 (52%), Gaps = 11/455 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-- 136
           L+ GK++HS I++ G      +QN +L++Y KC+      ++F  +  R++V++NT++  
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 137 ----SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
               + +  C G     F +M  + +  D +T+ +LL A      ++ G+R+H   +  G
Sbjct: 259 YAQKAYVEECIG----LFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEG 314

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  V +AL  ++ +CG V  A++  +    RD+V++N +++  A +   + A   + 
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYY 374

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR +G+  +  T+ S++N+C T  +   G  IH  + +     DV +  SL+ MYA+ G
Sbjct: 375 QMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCG 434

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++  A  +F+ M  ++++SWN ++ G+ +  D  EA+KL + M      P  VT   +LS
Sbjct: 435 DLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLS 494

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C + S   + + +H   +++G+++   + NAL+N Y +CGSI  A   F   +  D+++
Sbjct: 495 ACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W S+I  +A HG  + + ++F +M    + PD I F  VL  C +   +  G R  +++I
Sbjct: 555 WNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELG-RQIHMLI 613

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            +  +  D      L ++  R G L +AY++  S+
Sbjct: 614 IESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 192/368 (52%), Gaps = 1/368 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +   +  L++ C +   +   +R+H+ +++ G G + F+S+ L+++Y KC  V DA +VF
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
            ++  RD++ WN ++SCYA       A  +F  M+  G      T+ S++ +C +    +
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELE 200

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G++IH  +I+  +  D  V  SL++MY K  ++  A +VF G+  ++VVS+NTM+  + 
Sbjct: 201 YGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYA 260

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q     E + L   M      PD+VT  ++L +  + S+  E +++H  A+  G+ + + 
Sbjct: 261 QKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIR 320

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  AL   + +CG +AGA Q   +  + D+V + ++I A A HG  +E+ E + +M S  
Sbjct: 321 VGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDG 380

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           V  +   +L VL+ACS    +  G    +  IS+     D +    L  +  R G L  A
Sbjct: 381 VVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRA 439

Query: 521 YDLLASMP 528
            +L  +MP
Sbjct: 440 RELFNTMP 447


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 341/585 (58%), Gaps = 5/585 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L VSA    L  G QLH+  +K GL +++++ N ++ +Y KCK  DD  KLF  M   ++
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G        F  M    +R D +T  SLL A    +    G+ LH +
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    ++ F+ SALVD+Y KC  V  A+ V+D     D+V+ + M+S Y LN +   A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +  +G++ +    +S++ +C ++ + KLG+++H   +K +++    V ++L+DM
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G +D +  +F  ++AK+ V+WN+M+  F QNG+  EA+ L R+M         VT+
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +S+LS+C SL      +++H   IK  ++A L  E+ALI+ Y KCG++  A + F S+ E
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPE 613

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W SII +Y  +GL KES+ +   M     + D + FL ++SAC+H G V EGLR 
Sbjct: 614 KNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRL 673

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  +Y I P  EH+ C+ DL  R G L +A +L+  MP +P +   GA + AC+VH 
Sbjct: 674 FRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHR 733

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LA+ A+++L +L+P     Y L+SN+ A    W  V+++R++M+D    K+PG SW+
Sbjct: 734 NVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWV 793

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL 652
           ++    H FV++D+SHP +  +Y  L ++   + E    GH +++
Sbjct: 794 DVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREE---GHGDLI 835



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 247/494 (50%), Gaps = 8/494 (1%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           +H+F    +K  A  G +  G+ +H     LGL   + + + ++ +Y       D  ++F
Sbjct: 146 SHTF-PYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVF 204

Query: 122 DEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D M  R+ V WN ++ G +  G   +    F  M       +  T    L       D+ 
Sbjct: 205 DGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLF 264

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH+  +K G      V++ LV +Y KC  ++D  ++F  +   DLV WN M+S   
Sbjct: 265 FGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCV 324

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   D A+ +F  M+  G++ D  T  SL+ +   L     G+++HG +++    +DV 
Sbjct: 325 QNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVF 384

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           + ++LVD+Y K   +  A  V+D   A +VV  +TM+ G+  NG  +EAVK+ R +L+  
Sbjct: 385 LVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG 444

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+ V +AS+L +C S++     +++H+YA+KN  +    +E+AL++ Y+KCG +  + 
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH 504

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D VTW S+I ++A +G  +E++ +F +M    V+  ++    VLSAC+   
Sbjct: 505 YIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLP 564

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            +  G     ++I    I  D    + L D+ G+ G L  A+ +  SMP E    +  + 
Sbjct: 565 AIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLEWAHRVFESMP-EKNEVSWNSI 622

Query: 540 IGACKVHGSIGLAK 553
           I +   +G+ GL K
Sbjct: 623 IAS---YGAYGLVK 633



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 213/411 (51%), Gaps = 18/411 (4%)

Query: 79  LQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIVTWNT 134
           L  G Q+H   +  GL     +LQ +++ +YV  + F D   +F  +        + WN 
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNW 114

Query: 135 LISGIINCGGNVTPYFRRMLLDNVRL---------DHITFNSLLRACVQADDIEVGRRLH 185
           LI G+   G      +R  LL  +++         D  TF  ++++C     I +GR +H
Sbjct: 115 LIRGLTMAGD-----YRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
                +G   + FV SAL+ +Y   G + DAR+VFD +  RD VLWNVM+  Y       
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  MR  G + ++ T +  ++   T      G Q+H L +K   + +V VA +LV
Sbjct: 230 SAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLV 289

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MYAK   +DD  ++F  M   ++V+WN M+ G  QNG   +A+ L  DM +    PD V
Sbjct: 290 SMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSV 349

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           TL S+L +   L+   + +++H Y ++N V   + + +AL++ Y KC ++  A   + S 
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           K  D+V  +++I  Y  +G+S+E++++F  +L   +RP+++A   VL AC+
Sbjct: 410 KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/595 (35%), Positives = 330/595 (55%), Gaps = 5/595 (0%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H+S       ++  LK+      L++GK++H  ++  G    L     V+++Y KC+  +
Sbjct: 23  HDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQIN 82

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFR--RMLLDNVRLDHITFNSLLRACV 173
           D   +FD M  R++V WNT+ISG    G          RM  +  R D IT  S+L A  
Sbjct: 83  DAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVA 142

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
               + +G  +H ++L+ GF     VS+ALVD+Y KCG V  AR +FD +  R +V WN 
Sbjct: 143 DTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNS 202

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           M+  Y  +   +GA+ +F  M  EG++    T    +++C  LG  + G+ +H LV +  
Sbjct: 203 MIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLK 262

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
            D DV V  SL+ MY+K   +D A  +F  +  K +VSWN M++G+ QNG   EA+    
Sbjct: 263 LDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFC 322

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
           +M   +  PD  T+ S++ +   LSI  + + +H   I+  +   + +  AL++ Y+KCG
Sbjct: 323 EMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCG 382

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           +I  A + F  +    ++TW ++I  Y  HGL K S+E+F++M    ++P+ I FL  LS
Sbjct: 383 AIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALS 442

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           ACSH GLV EGL +F  M  DY I P  +HY  + DLLGR G L +A+D +  MPI+P  
Sbjct: 443 ACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGI 502

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
              GA +GACK+H ++ L + AA ++ +L P     + L++N+YA+   W  VA++R +M
Sbjct: 503 TVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIM 562

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
             +   K PGCS +EI  E+H+F S   SHPQ+  +Y+ L T   L++E   +G+
Sbjct: 563 EKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLET---LVDEIRAAGY 614



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 211/415 (50%), Gaps = 5/415 (1%)

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           +F RM  D+VR     F  LL+ C    D++ G+ +H  ++  GF  N F  + +V++Y 
Sbjct: 17  FFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYA 76

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KC  + DA  +FD +  RDLV WN M+S YA N     A+ +   M  EG + D  T  S
Sbjct: 77  KCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVS 136

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++ +       ++G  +HG V++  F+  V V+T+LVDMY+K G++  A  +FDGM  + 
Sbjct: 137 ILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRT 196

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VVSWN+M+ G+ Q+GD   A+ + + ML     P  VT+   L +C  L      + VH 
Sbjct: 197 VVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHK 256

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
              +  + + +S+ N+LI+ YSKC  +  A   F +++   LV+W ++I  YA +G   E
Sbjct: 257 LVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNE 316

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
           ++  F +M S  ++PDS   + V+ A +   +  +      L+I  + +  +    T L 
Sbjct: 317 ALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALV 375

Query: 509 DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
           D+  + G +  A  L   M       T  A I     +G+ GL K + E   E++
Sbjct: 376 DMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDG---YGTHGLGKTSVELFKEMK 426



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 177/347 (51%), Gaps = 7/347 (2%)

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           M+  YA +   D A++ F+ M+ + ++   + F+ L+  CG     K G++IHG VI   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
           F  ++   T +V+MYAK   I+DA  +FD M  +++V WNTM+ G+ QNG  + A+ L+ 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M +    PD +T+ SIL +     +      VH Y ++ G ++ +++  AL++ YSKCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           S++ A   F  +    +V+W S+I  Y   G ++ ++ +F+KML   V+P ++  +  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           AC+  G +  G ++ + ++    +  D      L  +  +   +  A D+  ++    R+
Sbjct: 241 ACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL----RN 295

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPS--KPVNYALVSNVYA 578
            TL ++      +   G    A     E++    KP ++ +VS + A
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 326/563 (57%), Gaps = 2/563 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A  G ++ G QLH  +++ G  +  ++ N ++ +Y KC    D  K+FD M   + 
Sbjct: 285 LSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDT 344

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN LI+G +  G        F+ M+   V+LD ITF S L + +++  ++  + +HS+
Sbjct: 345 VTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSY 404

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++ G   + ++ SALVD+Y K G VE A + F +    D+ +   M+S Y LN L   A
Sbjct: 405 IVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEA 464

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +  EGM  +  T +S++ +C  L S KLG+++H  ++K+  +    V +S+  M
Sbjct: 465 LNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYM 524

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK+G +D A + F  M  K+ V WN M+V F QNG    A+ L R M       D V+L
Sbjct: 525 YAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSL 584

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           ++ LS+C +       +++H + ++N   +   + + LI+ YSKCG +A A   F  +  
Sbjct: 585 SATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDW 644

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W SII AY  HG  +E +++F +M+   ++PD + FL ++SAC H GLV EG+ Y
Sbjct: 645 KNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYY 704

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  +Y I    EH+ C+ DL GR G L EA+D + SMP  P + T G+ +GAC++HG
Sbjct: 705 FRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHG 764

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LAK A++ L+EL+P+    Y L+SNV+A    W  V ++R +M++    K+PG SWI
Sbjct: 765 NVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWI 824

Query: 608 EIAGEIHTFVSSDRSHPQAVHMY 630
           ++ G  H F ++D  HPQ+V +Y
Sbjct: 825 DVNGGTHMFSAADGCHPQSVEIY 847



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/533 (30%), Positives = 275/533 (51%), Gaps = 31/533 (5%)

Query: 12  TVHFK--RPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQA 69
            V FK  R LSYL P   Q Q T+ +N      +VLS     S    ES  +      +A
Sbjct: 29  NVAFKQTRKLSYLQPK--QKQETSTSNTATTSNNVLS----KSRLFEESLAAQLESMFRA 82

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
              S      QQ +Q+H+ ++  G+   L+L +++L +YV C++F D+  LF  +++   
Sbjct: 83  FPNSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYS 142

Query: 130 VTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + WN LI G  ++ C      +F RML  NV  D  TF  +++AC   +++ + + +H  
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
              +GF ++ F+ S+L+ LY   G++ DA+ +FDE+  RD +LWNVM++ Y  N   + A
Sbjct: 203 ARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSA 262

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +  F  MR   +K +  +F  L++ C T G  + G Q+HGLVI+  F+ D  VA +++ M
Sbjct: 263 LGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITM 322

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K GN+ DA ++FD M   + V+WN ++ G+ QNG   EAV L + M+      D +T 
Sbjct: 323 YSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITF 382

Query: 368 ASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           AS L S    GSL      ++VH+Y +++GV   + +++AL++ Y K G +  A + F  
Sbjct: 383 ASFLPSVLKSGSLKY---CKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQ 439

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               D+   T++I  Y  +GL+ E++ +F  ++   + P+ +    VL AC+    +  G
Sbjct: 440 NTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLG 499

Query: 485 LRYFNLMISDYH--ILPDSEHYTC-----LTDLLGRVGLLVEAYDLLASMPIE 530
                    + H  IL       C     +T +  + G L  AY     MP++
Sbjct: 500 --------KELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK 544



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 230/447 (51%), Gaps = 3/447 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K +H     +G    L + + ++ +Y       D + LFDE+ VR+ + WN +++G +  
Sbjct: 197 KMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKN 256

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G   +    F+ M    V+ + ++F  LL  C     +  G +LH  +++ GF  +  V+
Sbjct: 257 GDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVA 316

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + ++ +Y KCG + DAR++FD +   D V WN +++ Y  N   D A+A+F  M   G+K
Sbjct: 317 NTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVK 376

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  TF+S + S    GS K  +++H  +++     DV + ++LVD+Y K G+++ AC+ 
Sbjct: 377 LDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKT 436

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F   T  +V     M+ G+  NG   EA+ L R ++Q    P+ +T+AS+L +C +L+  
Sbjct: 437 FQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASL 496

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              +++H   +K G++    + +++   Y+K G +  A Q F  +   D V W  +I ++
Sbjct: 497 KLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSF 556

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           + +G  + +I++F +M +   + DS++    LSAC++   +  G      ++ +  I  D
Sbjct: 557 SQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFI-SD 615

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASM 527
           +   + L D+  + G L  A  +   M
Sbjct: 616 TFVASTLIDMYSKCGKLALARSVFDMM 642



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 45/315 (14%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A    L+ GK+LH  I+K GL N   + + + ++Y K    D   + F  M V
Sbjct: 484 ASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPV 543

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V WN +I      G        FR+M     + D ++ ++ L AC     +  G+ L
Sbjct: 544 KDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKEL 603

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H F+++  F  + FV+S L+D+Y KCG +  AR VFD +  ++ V WN +++ Y  +   
Sbjct: 604 HCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRP 663

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
              + +F+ M   G++ D+ TF  ++++CG                              
Sbjct: 664 RECLDLFHEMVEAGIQPDHVTFLVIMSACG------------------------------ 693

Query: 305 VDMYAKNGNIDDACRVFDGMTAK-----NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
                  G +D+    F  MT +      +  +  MV  +G+ G   EA   ++ M    
Sbjct: 694 -----HAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSM---P 745

Query: 360 FCPDEVTLASILSSC 374
           F PD  T  S+L +C
Sbjct: 746 FTPDAGTWGSLLGAC 760


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 336/576 (58%), Gaps = 2/576 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L VSA    L  G QLH+  +K GL +++++ N ++ +Y KCK  DD  KLF  M   ++
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G        F  M    +R D +T  SLL A    +    G+ LH +
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    ++ F+ SALVD+Y KC  V  A+ V+D     D+V+ + M+S Y LN +   A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +  +G++ +    +S++ +C ++ + KLG+++H   +K +++    V ++L+DM
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G +D +  +F  ++AK+ V+WN+M+  F QNG+  EA+ L R+M         VT+
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +S+LS+C SL      +++H   IK  ++A L  E+ALI+ Y KCG++  A + F S+ E
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPE 613

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W SII +Y  +GL KES+ +   M     + D + FL ++SAC+H G V EGLR 
Sbjct: 614 KNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRL 673

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  +Y I P  EH+ C+ DL  R G L +A +L+  MP +P +   GA + AC+VH 
Sbjct: 674 FRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHR 733

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LA+ A+++L +L+P     Y L+SN+ A    W  V+++R++M+D    K+PG SW+
Sbjct: 734 NVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWV 793

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           ++    H FV++D+SHP +  +Y  L ++   + E 
Sbjct: 794 DVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREE 829



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 247/494 (50%), Gaps = 8/494 (1%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           +H+F    +K  A  G +  G+ +H     LGL   + + + ++ +Y       D  ++F
Sbjct: 146 SHTF-PYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVF 204

Query: 122 DEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D M  R+ V WN ++ G +  G   +    F  M       +  T    L       D+ 
Sbjct: 205 DGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLF 264

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH+  +K G      V++ LV +Y KC  ++D  ++F  +   DLV WN M+S   
Sbjct: 265 FGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCV 324

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   D A+ +F  M+  G++ D  T  SL+ +   L     G+++HG +++    +DV 
Sbjct: 325 QNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVF 384

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           + ++LVD+Y K   +  A  V+D   A +VV  +TM+ G+  NG  +EAVK+ R +L+  
Sbjct: 385 LVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG 444

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+ V +AS+L +C S++     +++H+YA+KN  +    +E+AL++ Y+KCG +  + 
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH 504

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D VTW S+I ++A +G  +E++ +F +M    V+  ++    VLSAC+   
Sbjct: 505 YIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLP 564

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            +  G     ++I    I  D    + L D+ G+ G L  A+ +  SMP E    +  + 
Sbjct: 565 AIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLEWAHRVFESMP-EKNEVSWNSI 622

Query: 540 IGACKVHGSIGLAK 553
           I +   +G+ GL K
Sbjct: 623 IAS---YGAYGLVK 633



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 213/411 (51%), Gaps = 18/411 (4%)

Query: 79  LQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIVTWNT 134
           L  G Q+H   +  GL     +LQ +++ +YV  + F D   +F  +        + WN 
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNW 114

Query: 135 LISGIINCGGNVTPYFRRMLLDNVRL---------DHITFNSLLRACVQADDIEVGRRLH 185
           LI G+   G      +R  LL  +++         D  TF  ++++C     I +GR +H
Sbjct: 115 LIRGLTMAGD-----YRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
                +G   + FV SAL+ +Y   G + DAR+VFD +  RD VLWNVM+  Y       
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  MR  G + ++ T +  ++   T      G Q+H L +K   + +V VA +LV
Sbjct: 230 SAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLV 289

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MYAK   +DD  ++F  M   ++V+WN M+ G  QNG   +A+ L  DM +    PD V
Sbjct: 290 SMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSV 349

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           TL S+L +   L+   + +++H Y ++N V   + + +AL++ Y KC ++  A   + S 
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           K  D+V  +++I  Y  +G+S+E++++F  +L   +RP+++A   VL AC+
Sbjct: 410 KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/564 (35%), Positives = 332/564 (58%), Gaps = 2/564 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           QG+++H +++KLG  +     N ++ +Y K    +D   +FDE+   +IV+WN +I+G +
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                       R M    +  +  T +S L+AC      E+GR+LHS ++K+  G + F
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           +   L+D+Y KC  ++DAR VF  +  RD++ WN ++S ++ N   + A ++F LM  EG
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG 308

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  +  T S+++ S   L ++ + RQIH L +K  F+ D  V  SL+D Y K G+++DA 
Sbjct: 309 IGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDAT 368

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           RVF+     ++V + ++V  + Q+G G EA++L  +M      PD    +S+L++C SLS
Sbjct: 369 RVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLS 428

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + +QVH + +K G  + +   N+L+N Y+KCGSI  A   F  +    +V+W+++IG
Sbjct: 429 AYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIG 488

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
             A HG  KE++++F++ML   V P+ I  + VL AC+H GLV+E   YFN M   + I 
Sbjct: 489 GLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIE 548

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY C+ DLLGR G L  A +L+  MP +  +   GA +GA ++H +I L + AAE 
Sbjct: 549 PMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEM 608

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           LL LEP K   + L++N+YAS   W  VAR+R++M+D    K PG SW+E+  +++TF+ 
Sbjct: 609 LLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIV 668

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEE 642
            DRSH ++  +YA L  +  L+++
Sbjct: 669 GDRSHSRSTEIYAKLDELSDLLKK 692



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/468 (29%), Positives = 247/468 (52%), Gaps = 4/468 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQ+H  ++  G  +   + N ++ +Y KC  F D   LFD +  R++V+WN L S  ++
Sbjct: 29  GKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVH 88

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
               G     F  M+L  +R +  + +S++  C   +D   GR++H +++K+G+  + F 
Sbjct: 89  SDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFS 148

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ALVD+Y K G +EDA  VFDE+   D+V WN +++   L+     A+ +   M   GM
Sbjct: 149 ANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGM 208

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + FT SS + +C  +   +LGRQ+H  +IK     D  +   L+DMY+K  ++DDA  
Sbjct: 209 CPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARL 268

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  M  +++++WN ++ G  QN +  EA  L   M       ++ TL+++L S  +L  
Sbjct: 269 VFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQA 328

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
           +   RQ+HA ++K+G +    + N+LI+ Y KCG +  A + F      DLV +TS++ A
Sbjct: 329 NYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTA 388

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA  G  +E++ ++ +M    ++PDS     +L+AC+      +G +  ++ I  +  + 
Sbjct: 389 YAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQG-KQVHVHILKFGFMS 447

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           D      L ++  + G + +A    + +P+     +  A IG    HG
Sbjct: 448 DIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIV-SWSAMIGGLAQHG 494



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 208/390 (53%), Gaps = 27/390 (6%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M L  ++ +   F S+L+AC    D+ +G+++H  ++  GF  + FV+++LV LY KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
             DAR +FD +  R +V WN + SCY  + +   A+++F+ M L G++ + F+ SS++N 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  L  S  GR+IHG +IK  +D D   A +LVDMYAK G ++DA  VFD +   ++VSW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++ G   +     A++LLR+M +   CP+  TL+S L +C  +++    RQ+H+  IK
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 393 --NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
              G  +FL +   LI+ YSKC S+  A   F  + E D++ W ++I  ++ +   +E+ 
Sbjct: 241 MDMGSDSFLGV--GLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAA 298

Query: 451 EVFEKMLSHAVRPD---------SIAFLEVLSACS--HGGLVSEGLRYFNLMISDYHILP 499
            +F  M +  +  +         SIA L+    C   H   +  G  + N +++      
Sbjct: 299 SLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNS----- 353

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
                  L D  G+ G + +A  +    PI
Sbjct: 354 -------LIDTYGKCGHVEDATRVFEESPI 376


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/582 (33%), Positives = 334/582 (57%), Gaps = 3/582 (0%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I + T      +   L+  A+   L+QG+++H+ I+K G+     L+N +L +Y KC + 
Sbjct: 39  ILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSL 98

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRAC 172
            D  ++FD +R RNIV+W  +I   +    N+  +  +  M L   + D +TF SLL A 
Sbjct: 99  TDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAF 158

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
              + +++G+++H  I++ G  L   V ++LV +Y KCG +  AR +FD +  +++V W 
Sbjct: 159 TNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWT 218

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           ++++ YA     D A+ +   M+   +  +  TF+S++  C T  + + G+++H  +I+ 
Sbjct: 219 LLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQS 278

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            +  ++ V  SL+ MY K G +++A ++F  +  ++VV+W  MV G+ Q G   EA+ L 
Sbjct: 279 GYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLF 338

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           R M Q    PD++T  S+L+SC S +   E +++H   +  G    + +++AL++ Y+KC
Sbjct: 339 RRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKC 398

Query: 413 GSIAGALQCFGSVKEPDLVTWTSII-GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           GS+  A   F  + E ++V WT+II G  A HG  +E++E F++M    ++PD + F  V
Sbjct: 399 GSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSV 458

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           LSAC+H GLV EG ++F  M  DY I P  EHY+C  DLLGR G L EA +++ SMP  P
Sbjct: 459 LSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIP 518

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
                GA + AC+VH  +   + AAE +L+L+P     Y  +S++YA+   + D  ++R+
Sbjct: 519 GPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQ 578

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +M      K PG SWIE+ G++H F   D+SHP++  +Y  L
Sbjct: 579 VMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVEL 620



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 204/395 (51%), Gaps = 1/395 (0%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M+L   R+    F  LL+ C +   +E GR +H+ ILK G   N ++ + L+ +Y KCG 
Sbjct: 38  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 97

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           + DARRVFD +  R++V W  M+  +        A   +  M+L G K D  TF SL+N+
Sbjct: 98  LTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNA 157

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
                  +LG+++H  +++   +L+  V TSLV MYAK G+I  A  +FD +  KNVV+W
Sbjct: 158 FTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTW 217

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             ++ G+ Q G    A++LL  M Q    P+++T ASIL  C + +     ++VH Y I+
Sbjct: 218 TLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQ 277

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           +G    L + N+LI  Y KCG +  A + F  +   D+VTWT+++  YA  G   E+I +
Sbjct: 278 SGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINL 337

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F +M    ++PD + F  VL++CS    + EG R    ++   + L D    + L  +  
Sbjct: 338 FRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL-DVYLQSALVSMYA 396

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           + G + +A  +   M             G C  HG
Sbjct: 397 KCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHG 431



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 5/284 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ + N M L+G +     F  L+  C  L S + GR++H  ++K     +  +  +L+ 
Sbjct: 31  ALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLS 90

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G++ DA RVFD +  +N+VSW  M+  F       EA K    M      PD+VT
Sbjct: 91  MYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVT 150

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             S+L++  +  +    ++VH   ++ G++    +  +L+  Y+KCG I+ A   F  + 
Sbjct: 151 FVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLP 210

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E ++VTWT +I  YA  G    ++E+ E M    V P+ I F  +L  C+    +  G +
Sbjct: 211 EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKK 270

Query: 487 YFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASMP 528
               +I   +     E +    L  +  + G L EA  L + +P
Sbjct: 271 VHRYIIQSGY---GRELWVVNSLITMYCKCGGLEEARKLFSDLP 311


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 318/559 (56%), Gaps = 3/559 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L+  K++H H  K G  + L + N ++H+Y KC + DD   +FD M  R++++WN +I
Sbjct: 248 GALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMI 307

Query: 137 SGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            G+    CG      F +M  +    D  T+ SLL   V     E  + +H   ++VG  
Sbjct: 308 GGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +  V SA V +Y +CG ++DA+ +FD++  R++  WN M+   A    G  A+++F  M
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R EG   D  TF +++++     + +  +++H   I     +D+ V  +LV MYAK GN 
Sbjct: 428 RREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNT 486

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
             A +VFD M  +NV +W  M+ G  Q+G G EA  L   ML+    PD  T  SILS+C
Sbjct: 487 MYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSAC 546

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            S       ++VH++A+  G+ + L + NAL++ Y+KCGS+  A + F  + E D+ +WT
Sbjct: 547 ASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWT 606

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            +IG  A HG   +++++F KM     +P+  +F+ VLSACSH GLV EG R F  +  D
Sbjct: 607 VMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQD 666

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I P  EHYTC+ DLLGR G L EA   + +MPIEP     GA +GAC  +G++ +A++
Sbjct: 667 YGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEF 726

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA++ L+L+P     Y L+SN+YA+   W     +R MM+     K PG SWIE+  +IH
Sbjct: 727 AAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIH 786

Query: 615 TFVSSDRSHPQAVHMYAML 633
           +FV  D SHP++  +YA L
Sbjct: 787 SFVVGDTSHPESKEIYAKL 805



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 168/571 (29%), Positives = 278/571 (48%), Gaps = 54/571 (9%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           V S   R  G  +E T      Y   LK       L+ GK++H+HI++ G  + + ++  
Sbjct: 17  VYSQMRREGGQPNEIT------YLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETA 70

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFR--RMLLDNVRLD 161
           ++++YVKC + DD + +FD+M  RN+++W  +I G+ + G     + R  +M  +    +
Sbjct: 71  LVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPN 130

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             T+ S+L A   A  +E  + +HS  +  G  L+  V +ALV +Y K G ++DAR VFD
Sbjct: 131 SYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFD 190

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG--TLGSS 279
            ++ RD+  W VM+   A +  G  A ++F  M   G   +  T+ S++N+    + G+ 
Sbjct: 191 GMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGAL 250

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           +  +++H    K  F  D+ V  +L+ MYAK G+IDDA  VFDGM  ++V+SWN M+ G 
Sbjct: 251 EWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGL 310

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QNG G EA  +   M Q  F PD  T  S+L++  S       ++VH +A++ G+ + L
Sbjct: 311 AQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDL 370

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + +A ++ Y +CGSI  A   F  +   ++ TW ++IG  A     +E++ +F +M   
Sbjct: 371 RVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRRE 430

Query: 460 AVRPDSIAFLEVLSA----------------CSHGGLVSEGLRYFNLMISDYHILPDSEH 503
              PD+  F+ +LSA                    GLV   LR  N ++  Y    ++ +
Sbjct: 431 GFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVD--LRVGNALVHMYAKCGNTMY 488

Query: 504 ---------------YTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKV 545
                          +T +   L + G   EA+ L   M    I P + T  + + AC  
Sbjct: 489 AKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSAC-- 546

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
             S G  +W  E       S  VN  LVS++
Sbjct: 547 -ASTGALEWVKEV-----HSHAVNAGLVSDL 571



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 136/243 (55%)

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           M+  YA     + A+ V++ MR EG + +  T+ S++ +C +  S K G++IH  +I+  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
           F  DV V T+LV+MY K G+IDDA  +FD M  +NV+SW  M+ G    G G+EA     
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M +  F P+  T  SIL++  S       ++VH++A+  G+   L + NAL++ Y+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           SI  A   F  + E D+ +WT +IG  A HG  +E+  +F +M      P+   +L +L+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 474 ACS 476
           A +
Sbjct: 241 ASA 243



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 82/145 (56%)

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G+ + G   +A+K+   M +    P+E+T  SIL +C S       +++HA+ I++G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
            Q+ + +E AL+N Y KCGSI  A   F  + E ++++WT +IG  A +G  +E+   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGG 479
           +M      P+S  ++ +L+A +  G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAG 145


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/580 (34%), Positives = 336/580 (57%), Gaps = 4/580 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A    + +GK++H+H+++ G  + + + N ++ +YVKC    +   LFD+M 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 126 VRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ ++WN +ISG    GG +     F  M   +V  D IT  ++  AC   D+  +GR 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +++K  FG +  ++++L+ +Y   G +E+A  VF  +  +D+V W  M++    + L
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+  + +M LEG+  D  T  S++++C  +G   LG ++H + IK      V+V+ S
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K   +D+A  VF  ++ KNVVSW ++++G   N    EA+   R M + S  P+
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPN 499

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VTL S+LS+C  +      +++HA+A++ GV     + NA+++ Y +CG    AL  F 
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S K+ D+  W  ++  YA  G +K ++E+F+KML   + PD I F+ +L ACS  G+V+E
Sbjct: 560 SQKK-DVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTE 618

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL YFN+M + Y++ P+ +HY C+ D+LGR G L +AYD +  MPI P +   GA + AC
Sbjct: 619 GLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNAC 678

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H ++ L + AA+++ E +      Y L+ N+YA    W  V+++R +MR+      PG
Sbjct: 679 RIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPG 738

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           CSW+EI G++H F+S D SH Q+  +  +L      M+EN
Sbjct: 739 CSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKEN 778



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 224/406 (55%), Gaps = 3/406 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G +++  +     C  + L N +L ++V+     D   +F +M  R++ +WN L+ G  
Sbjct: 115 EGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYA 174

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        + RML   +R +  TF S+L+ C    DI  G+ +H+ +++ GF  +  
Sbjct: 175 KAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVD 234

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V +AL+ +Y KCG + +AR +FD++  RD + WN M+S Y  N  G   + +F++MR   
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS 294

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D  T +++ ++C  L + +LGR +HG V+K  F  D+ +  SL+ MY+  G +++A 
Sbjct: 295 VDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAE 354

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF  M +K+VVSW  M+     +    +AV+  + M      PDE+TL S+LS+C  + 
Sbjct: 355 TVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIG 414

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                 ++H  AIK G+ + + + N+LI+ YSKC  +  AL+ F ++   ++V+WTS+I 
Sbjct: 415 HLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               +  S E++  F +M   +++P+S+  + VLSAC+  G +  G
Sbjct: 475 GLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRG 519



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 187/352 (53%), Gaps = 3/352 (0%)

Query: 144 GNVTPYFRR---MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           GN+    +R   ML   + ++   + +LLR C      + G R++  +      L   + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+ ++ + G + DA  VF ++  RD+  WNV+V  YA     D A+ +++ M    ++
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + +TF S++ +C  +     G++IH  VI+  F+ DV V  +L+ MY K G+I +A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD M  ++ +SWN M+ G+ +NG G E ++L   M + S  PD +T+ ++ S+C  L   
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              R VH Y +K+     +S+ N+LI  YS  G +  A   F  ++  D+V+WT++I + 
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             H L  +++E ++ M    + PD I  + VLSAC+  G +  G+R   + I
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/580 (34%), Positives = 336/580 (57%), Gaps = 4/580 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A    + +GK++H+H+++ G  + + + N ++ +YVKC    +   LFD+M 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 126 VRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ ++WN +ISG    GG +     F  M   +V  D IT  ++  AC   D+  +GR 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +++K  FG +  ++++L+ +Y   G +E+A  VF  +  +D+V W  M++    + L
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+  + +M LEG+  D  T  S++++C  +G   LG ++H + IK      V+V+ S
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K   +D+A  VF  ++ KNVVSW ++++G   N    EA+   R M + S  P+
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPN 499

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VTL S+LS+C  +      +++HA+A++ GV     + NA+++ Y +CG    AL  F 
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S K+ D+  W  ++  YA  G +K ++E+F+KML   + PD I F+ +L ACS  G+V+E
Sbjct: 560 SQKK-DVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTE 618

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL YFN+M + Y++ P+ +HY C+ D+LGR G L +AYD +  MPI P +   GA + AC
Sbjct: 619 GLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNAC 678

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H ++ L + AA+++ E +      Y L+ N+YA    W  V+++R +MR+      PG
Sbjct: 679 RIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPG 738

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           CSW+EI G++H F+S D SH Q+  +  +L      M+EN
Sbjct: 739 CSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKEN 778



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 224/406 (55%), Gaps = 3/406 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G +++  +     C  + L N +L ++V+     D   +F +M  R++ +WN L+ G  
Sbjct: 115 EGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYA 174

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        + RML   +R +  TF S+L+ C    DI  G+ +H+ +++ GF  +  
Sbjct: 175 KAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVD 234

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V +AL+ +Y KCG + +AR +FD++  RD + WN M+S Y  N  G   + +F++MR   
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS 294

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D  T +++ ++C  L + +LGR +HG V+K  F  D+ +  SL+ MY+  G +++A 
Sbjct: 295 VDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAE 354

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF  M +K+VVSW  M+     +    +AV+  + M      PDE+TL S+LS+C  + 
Sbjct: 355 TVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIG 414

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                 ++H  AIK G+ + + + N+LI+ YSKC  +  AL+ F ++   ++V+WTS+I 
Sbjct: 415 HLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               +  S E++  F +M   +++P+S+  + VLSAC+  G +  G
Sbjct: 475 GLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRG 519



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 187/352 (53%), Gaps = 3/352 (0%)

Query: 144 GNVTPYFRR---MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           GN+    +R   ML   + ++   + +LLR C      + G R++  +      L   + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+ ++ + G + DA  VF ++  RD+  WNV+V  YA     D A+ +++ M    ++
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + +TF S++ +C  +     G++IH  VI+  F+ DV V  +L+ MY K G+I +A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD M  ++ +SWN M+ G+ +NG G E ++L   M + S  PD +T+ ++ S+C  L   
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              R VH Y +K+     +S+ N+LI  YS  G +  A   F  ++  D+V+WT++I + 
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             H L  +++E ++ M    + PD I  + VLSAC+  G +  G+R   + I
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 340/561 (60%), Gaps = 8/561 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G +++G Q+H+ ++K GL + + + N ++++Y K     D + +FD M  RN V+WN++I
Sbjct: 207 GAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMI 266

Query: 137 SGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +G +  G ++  +  F RM L+ V+L    F ++++ C    ++   ++LH  ++K G  
Sbjct: 267 AGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSD 326

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
            +  + +AL+  Y KC  ++DA ++F  +   +++V W  ++S Y  N   D A+ +F  
Sbjct: 327 FDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQ 386

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR EG++ ++FT+S+++ +   +  S    QIH LV+K +++    V T+L D Y+K G+
Sbjct: 387 MRREGVRPNHFTYSTILTANAAVSPS----QIHALVVKTNYENSPSVGTALSDSYSKIGD 442

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
            ++A ++F+ +  K++V+W+ M+ G+ Q GD   AVK+   + +    P+E T +S+L++
Sbjct: 443 ANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNA 502

Query: 374 CGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C + + S E  +Q H+ +IK+G    L + +AL+  Y+K G+I  A + F    + DLV+
Sbjct: 503 CAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVS 562

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W S+I  YA HG  K+S+++FE+M S  +  D I F+ V+SAC+H GLV+EG RYF+LM+
Sbjct: 563 WNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMV 622

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
            DYHI+P  EHY+C+ DL  R G+L +A DL+  MP    +      + AC+VH ++ L 
Sbjct: 623 KDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLG 682

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           + AAEKL+ L+P     Y L+SN+YA+   W + A++RK+M      K  G SWIE+  +
Sbjct: 683 ELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNK 742

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
             +F++ D SHPQ+  +Y  L
Sbjct: 743 TFSFMAGDLSHPQSDRIYLKL 763



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 221/398 (55%), Gaps = 7/398 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQ+H   +K G    +S+   ++ +Y+K ++ +D E++FDEMRV+N+V+W +L++G   
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N      F +M L+ ++ +  TF ++L        +E G ++H+ ++K G     FV
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +++V++Y K   V DA+ VFD +  R+ V WN M++ +  N L   A  +F  MRLEG+
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K     F++++  C  +      +Q+H  VIK   D D+ + T+L+  Y+K   IDDA +
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 320 VFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +F  M   +NVVSW  ++ G+ QNG    A+ L   M +    P+  T ++IL++  ++S
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS 410

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
            S    Q+HA  +K   +   S+  AL ++YSK G    A + F  + E D+V W++++ 
Sbjct: 411 PS----QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            YA  G  + ++++F ++    V P+   F  VL+AC+
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  + + +L+ C    D  VG+++H   +K GF  +  V ++LVD+Y K   VED  RVF
Sbjct: 91  DGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVF 150

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  +++V W  +++ Y  N L + A+ +F+ M+LEG+K + FTF++++      G+ +
Sbjct: 151 DEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVE 210

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G Q+H +VIK   D  + V  S+V+MY+K+  + DA  VFD M  +N VSWN+M+ GF 
Sbjct: 211 KGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFV 270

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
            NG   EA +L   M        +   A+++  C ++      +Q+H   IKNG    L+
Sbjct: 271 TNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN 330

Query: 401 IENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           I+ AL+ AYSKC  I  A + F  +    ++V+WT+II  Y  +G +  ++ +F +M   
Sbjct: 331 IKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRRE 390

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            VRP+   +  +L+A      VS    +  ++ ++Y   P     T L+D   ++G   E
Sbjct: 391 GVRPNHFTYSTILTA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANE 445

Query: 520 A---YDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           A   ++L+    I   S  L  +     + G++ +
Sbjct: 446 AAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKI 480



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 140/262 (53%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           ++++FDE   + L   N ++  ++ N     A+ +F  +R  G   D  + S ++  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L    +G+Q+H   IK  F  DV V TSLVDMY K  +++D  RVFD M  KNVVSW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ QNG   +A+KL   M      P+  T A++L    +     +  QVH   IK+G+
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + + + N+++N YSK   ++ A   F S++  + V+W S+I  +  +GL  E+ E+F +
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 456 MLSHAVRPDSIAFLEVLSACSH 477
           M    V+     F  V+  C++
Sbjct: 285 MRLEGVKLTQTIFATVIKLCAN 306



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 90/174 (51%)

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD    + +   N ++  F +N   +EA+ L   + +     D  +L+ +L  CG L 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                +QVH   IK G    +S+  +L++ Y K  S+    + F  ++  ++V+WTS++ 
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            Y  +GL+++++++F +M    ++P+   F  VL   +  G V +G++   ++I
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVI 220


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/596 (34%), Positives = 331/596 (55%), Gaps = 5/596 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  ++  AK   L++GKQLH+ ++  G      L N ++++Y KC   D   KLFD M  
Sbjct: 9   AHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W  +ISG+            F  M +         F+S +RAC     IE+G+++
Sbjct: 69  RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H   LK G G   FV S L D+Y KCG + DA +VF+E+ C+D V W  M+  Y+     
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 188

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+  F  M  E +  D     S + +CG L + K GR +H  V+K  F+ D+ V  +L
Sbjct: 189 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 248

Query: 305 VDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            DMY+K G+++ A  VF G+ +  +NVVS+  ++ G+ +     + + +  ++ +    P
Sbjct: 249 TDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E T +S++ +C + +   +  Q+HA  +K        + + L++ Y KCG +  A+Q F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 367

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + +P  + W S++  +  HGL K++I++FE+M+   V+P++I F+ +L+ CSH GLV 
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVE 427

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGL YF  M   Y ++P  EHY+C+ DLLGR G L EA + +  MP EP +    +F+GA
Sbjct: 428 EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGA 487

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++HG   + K AAEKL++LEP       L+SN+YA+ER W DV  +R  MRD    K+P
Sbjct: 488 CRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLP 547

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           G SW+++  + H F + D SHP+   +Y  L T+   ++        + +  +MD+
Sbjct: 548 GYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDD 603



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 226/448 (50%), Gaps = 29/448 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A++  A  G ++ GKQ+H   +K G+ ++L + + +  +Y KC A  D  K+F+EM 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V+W  +I G    G        F++M+ + V +D     S L AC      + GR 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNC 242
           +HS ++K+GF  + FV +AL D+Y K G +E A  VF  +  CR++V +  ++  Y    
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             +  ++VF  +R +G++ + FTFSSL+ +C    + + G Q+H  V+K +FD D  V++
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LVDMY K G ++ A + FD +     ++WN++V  FGQ+G G++A+K+   M+     P
Sbjct: 349 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 408

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA------------LINAYS 410
           + +T  S+L+ C            HA  ++ G+  F S++              +I+   
Sbjct: 409 NAITFISLLTGCS-----------HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLG 457

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           + G +  A +    +  EP+   W S +GA   HG  +      EK++   + P +   L
Sbjct: 458 RAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGAL 515

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHI 497
            +LS         E +R   + + D ++
Sbjct: 516 VLLSNIYANERQWEDVRSVRMRMRDGNV 543



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 2/201 (0%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   LA ++ +          +Q+HA  I  G      + N L+N YSKCG +  AL+ F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            ++ + +LV+WT++I   + +    E+I  F  M      P   AF   + AC+  G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
            G +   L +  + I  +    + L D+  + G + +A  +   MP +          G 
Sbjct: 124 MGKQMHCLALK-FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 543 CKVHGSIGLAKWAAEKLLELE 563
            K+ G    A  A +K+++ E
Sbjct: 183 SKI-GEFEEALLAFKKMIDEE 202


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 331/567 (58%), Gaps = 2/567 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GK++H+ ++  G  +   +   ++ +YVK  + DD  ++FD + +R++ T+N ++ G
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G     +  F RM    ++ + I+F S+L  C   + +  G+ +H+  +  G   +
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V+++L+ +Y  CG +E ARRVFD +  RD+V W VM+  YA N   + A  +F  M+ 
Sbjct: 294 IRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQE 353

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG++ D  T+  ++N+C    +    R+IH  V    F  D+LV+T+LV MYAK G I D
Sbjct: 354 EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKD 413

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  ++VVSW+ M+  + +NG G EA +    M + +  PD VT  ++L++CG 
Sbjct: 414 ARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGH 473

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L       +++  AIK  + + + + NALI   +K GS+  A   F ++   D++TW ++
Sbjct: 474 LGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAM 533

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG Y+ HG ++E++ +F++ML    RP+S+ F+ VLSACS  G V EG R+F  ++    
Sbjct: 534 IGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRG 593

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  + Y C+ DLLGR G L EA  L+ SMP++P S    + + AC++HG++ +A+ AA
Sbjct: 594 IVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAA 653

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E+ L ++P     Y  +S++YA+   W +VA++RK+M      K  GC+WIE+AG++HTF
Sbjct: 654 ERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTF 713

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           V  DRSHP    +YA L  +   ++  
Sbjct: 714 VVEDRSHPLVGEIYAELARLMNAIKRE 740



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 257/507 (50%), Gaps = 9/507 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQ+  HI++ G    +   N ++ +Y  C    +  ++FD +  + +VTWN LI+G   
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        FR+M+ + +    ITF S+L AC     +  G+ +H+ ++  GF  +  +
Sbjct: 136 VGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRI 195

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV +Y K G ++DAR+VFD +  RD+  +NVMV  YA +   + A  +F  M+  G+
Sbjct: 196 GTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL 255

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K +  +F S+++ C T  +   G+ +H   +      D+ VATSL+ MY   G+I+ A R
Sbjct: 256 KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARR 315

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VFD M  ++VVSW  M+ G+ +NG+  +A  L   M +    PD +T   I+++C   + 
Sbjct: 316 VFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISAN 375

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               R++H+     G    L +  AL++ Y+KCG+I  A Q F ++   D+V+W+++IGA
Sbjct: 376 LNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGA 435

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI-- 497
           Y  +G   E+ E F  M    + PD + ++ +L+AC H G +  G+  +   I    +  
Sbjct: 436 YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSH 495

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
           +P       +    G V      +D +    +     T  A IG   +HG+   A +  +
Sbjct: 496 VPLGNALIIMNAKHGSVERARYIFDTMVRRDV----ITWNAMIGGYSLHGNAREALYLFD 551

Query: 558 KLLELEPSKPVNYALVSNVYASERCWF 584
           ++L+ E  +P +   V  + A  R  F
Sbjct: 552 RMLK-ERFRPNSVTFVGVLSACSRAGF 577



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 207/388 (53%), Gaps = 12/388 (3%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  T+  L + C +  D  +G+++   I++ G  LN +  + L+ LY  CG V +AR++
Sbjct: 55  IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQI 114

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD V  + +V WN +++ YA       A A+F  M  EG++    TF S++++C +    
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G+++H  V+   F  D  + T+LV MY K G++DDA +VFDG+  ++V ++N MV G+
Sbjct: 175 NWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGY 234

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            ++GD  +A +L   M Q    P++++  SIL  C +       + VHA  +  G+   +
Sbjct: 235 AKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDI 294

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +  +LI  Y+ CGSI GA + F ++K  D+V+WT +I  YA +G  +++  +F  M   
Sbjct: 295 RVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEE 354

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL---PDSEHYTCLTDLLGRVGL 516
            ++PD I ++ +++AC+    +S  L +   + S   I     D    T L  +  + G 
Sbjct: 355 GIQPDRITYMHIMNACA----ISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGA 410

Query: 517 LVEAYDLLASMPIEPRSDTL--GAFIGA 542
           + +A  +  +M   PR D +   A IGA
Sbjct: 411 IKDARQVFDAM---PRRDVVSWSAMIGA 435



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%)

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           GA  V   +   G   D  T+  L   C  L  + LG+Q+   +I+    L++    +L+
Sbjct: 40  GANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLI 99

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            +Y+  GN+ +A ++FD +  K VV+WN ++ G+ Q G  +EA  L R M+     P  +
Sbjct: 100 KLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSII 159

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T  S+L +C S +     ++VHA  +  G  +   I  AL++ Y K GS+  A Q F  +
Sbjct: 160 TFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGL 219

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
              D+ T+  ++G YA  G  +++ E+F +M    ++P+ I+FL +L  C
Sbjct: 220 HIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 65/129 (50%)

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A  +L+ + +G    D  T   +   C  L  +   +QV  + I+ G Q  +   N LI 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            YS CG++  A Q F SV+   +VTW ++I  YA  G  KE+  +F +M+   + P  I 
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 468 FLEVLSACS 476
           FL VL ACS
Sbjct: 161 FLSVLDACS 169


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/564 (36%), Positives = 331/564 (58%), Gaps = 3/564 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    +  G QLH  ++  GL  + S++N +L +Y KC  FDD  KLF  M   + 
Sbjct: 242 LSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADT 301

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G       +F  M+   V  D ITF+SLL +  + +++E  R++H +
Sbjct: 302 VTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCY 361

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    L+ F++SAL+D Y KC  V  A+++F +    D+V++  M+S Y  N L   A
Sbjct: 362 IMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDA 421

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +    +  +  T  S++   G L + KLGR++HG +IK+ FD    +  +++DM
Sbjct: 422 LEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDM 481

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G ++ A  +F  ++ +++VSWN+M+    Q+ +   A+ + R M     C D V++
Sbjct: 482 YAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSI 541

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           ++ LS+C +L      + +H + IK+ +   +  E+ LI+ Y+KCG++  A+  F ++KE
Sbjct: 542 SAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKE 601

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLR 486
            ++V+W SII AY  HG  K+S+ +F +M+  +  RPD I FLE++S C H G V EG+R
Sbjct: 602 KNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVR 661

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +F  M  DY I P  EHY C+ DL GR G L EAY+ + SMP  P +   G  +GA ++H
Sbjct: 662 FFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLH 721

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            ++ LAK A+ +L++L+P     Y L+SN +A+   W  V ++R +M++    K+PG SW
Sbjct: 722 KNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSW 781

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMY 630
           IEI    H FVS D +HP++ H+Y
Sbjct: 782 IEINKITHLFVSGDVNHPESSHIY 805



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 232/441 (52%), Gaps = 8/441 (1%)

Query: 46  SSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL 105
           S  LRNS    E T       S  L+  +    L+QGKQ+H+ ++   +        ++L
Sbjct: 16  SLPLRNSYRFLEETLPRR--LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERIL 73

Query: 106 HVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLD 161
            +Y  C +F +  K+F  +  R+ +I  WN++IS  +  G       ++ +ML   V  D
Sbjct: 74  GMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPD 133

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             TF  L++ACV   + +    L   +  +G   N FV+S+L+  Y + G ++ A ++FD
Sbjct: 134 VSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFD 193

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            VL +D V+WNVM++ YA     D  I  F+LMR++ +  +  TF  +++ C +     L
Sbjct: 194 RVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDL 253

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G Q+HGLV+    D +  +  SL+ MY+K G  DDA ++F  M+  + V+WN M+ G+ Q
Sbjct: 254 GVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQ 313

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           +G   E++    +M+     PD +T +S+L S          RQ+H Y +++ +   + +
Sbjct: 314 SGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFL 373

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            +ALI+AY KC  ++ A + F      D+V +T++I  Y  +GL+ +++E+F  ++   +
Sbjct: 374 TSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKI 433

Query: 462 RPDSIAFLEVLSACSHGGLVS 482
            P+ I  + +L     GGL++
Sbjct: 434 SPNEITLVSILPVI--GGLLA 452



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 243/486 (50%), Gaps = 6/486 (1%)

Query: 85  LHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           L   +  LG+ CN+  + + ++  Y++    D   KLFD +  ++ V WN +++G   CG
Sbjct: 156 LSDTVSSLGMDCNEF-VASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCG 214

Query: 144 GN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            +  V   F  M +D +  + +TF+ +L  C     I++G +LH  ++  G      + +
Sbjct: 215 ASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN 274

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +L+ +Y KCG  +DA ++F  +   D V WN M+S Y  + L + ++  F  M   G+  
Sbjct: 275 SLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP 334

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  TFSSL+ S     + +  RQIH  +++ S  LD+ + ++L+D Y K   +  A ++F
Sbjct: 335 DAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIF 394

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
               + +VV +  M+ G+  NG   +A+++ R +++    P+E+TL SIL   G L    
Sbjct: 395 SQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALK 454

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             R++H + IK G     +I  A+I+ Y+KCG +  A + FG + + D+V+W S+I   A
Sbjct: 455 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCA 514

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
                  +I++F +M    +  D ++    LSAC++    S G      MI  + +  D 
Sbjct: 515 QSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIK-HSLALDV 573

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
              + L D+  + G L  A ++  +M  E    +  + I A   HG +  +     +++E
Sbjct: 574 YSESTLIDMYAKCGNLKAAMNVFDTMK-EKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVE 632

Query: 562 LEPSKP 567
              ++P
Sbjct: 633 KSGNRP 638



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL   A       GK +H  ++K  L   +  ++ ++ +Y KC        +FD M+ 
Sbjct: 542 SAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKE 601

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRR 183
           +NIV+WN++I+   N G   +    F  M+  +  R D ITF  ++  C    D++ G R
Sbjct: 602 KNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVR 661

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
              S     G        + +VDL+G+ G + +A
Sbjct: 662 FFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEA 695


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 341/578 (58%), Gaps = 3/578 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    L  G QLH+  +K GL  ++++ N ++ +Y KC+  ++  +LF  M   ++
Sbjct: 255 LSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDL 314

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +ISG +  G   +    F  M    ++ D +T  SLL A  + +  + G+ +H +
Sbjct: 315 VTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGY 374

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++    ++ F+ SALVD+Y KC  V  A+ VFD     D+V+ + M+S Y LN + + A
Sbjct: 375 IVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAA 434

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +   G+K +    +S + +C ++ + ++G+++HG V+K +++    V ++L+DM
Sbjct: 435 VKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDM 494

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G +D +  +F  M+AK+ V+WN+M+  F QNG+  EA+ L R M+      + VT+
Sbjct: 495 YSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTI 554

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +SILS+C  L      +++H   IK  ++A L  E+ALI+ Y KCG++  AL+ F  + E
Sbjct: 555 SSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPE 614

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W SII AY  HGL KES+++   M     + D + FL ++SAC+H G V EGLR 
Sbjct: 615 KNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRL 674

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  +YHI P  EH +C+ DL  R G L +A   +A MP +P +   GA + AC+VH 
Sbjct: 675 FRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHR 734

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LA+ A+++L +L+P     Y L+SN+ A    W  V+++R++M+D    K+PG SW+
Sbjct: 735 NVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWV 794

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCT-VFGLMEENN 644
           ++    H FV++D++HP +  +Y  L + +  L +E N
Sbjct: 795 DVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELKQEGN 832



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 241/482 (50%), Gaps = 4/482 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           +K  A  G L  G+ +H     LGL   + + + ++ +Y      D   ++FD M  R+ 
Sbjct: 154 VKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDC 213

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++ G +  G   +    FR M       +  T    L  C    D+  G +LH+ 
Sbjct: 214 VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTL 273

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K G      V++ LV +Y KC  +E+A R+F  +   DLV WN M+S    N L D A
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDA 333

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M+  G++ D  T +SL+ +   L   K G++IHG +++    +DV + ++LVD+
Sbjct: 334 LRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDI 393

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K  ++  A  VFD   + +VV  +TM+ G+  N     AVK+ R +L     P+ V +
Sbjct: 394 YFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMV 453

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           AS L +C S++     +++H Y +KN  +    +E+AL++ YSKCG +  +   F  +  
Sbjct: 454 ASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSA 513

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D VTW S+I ++A +G  +E++++F +M+   V+ +++    +LSAC+    +  G   
Sbjct: 514 KDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEI 573

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             ++I    I  D    + L D+ G+ G L  A  +   MP E    +  + I A   HG
Sbjct: 574 HGIIIKG-PIRADLFAESALIDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAHG 631

Query: 548 SI 549
            +
Sbjct: 632 LV 633



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 210/410 (51%), Gaps = 12/410 (2%)

Query: 79  LQQGKQLHSHIMKLGLCN-----KLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIV 130
           L  G ++H+  +  GL +       +LQ +++ +YV  + F D   +F  +        +
Sbjct: 52  LPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAAL 111

Query: 131 TWNTLISGIINCGGN--VTPYFRRMLL--DNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            WN LI G    G +     ++ +M     + R D  T   ++++C     + +GR +H 
Sbjct: 112 PWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHR 171

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
               +G   + +V SAL+ +Y   G ++ AR VFD +  RD VLWNVM+  Y        
Sbjct: 172 TTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVAS 231

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F +MR  G   ++ T +  ++ C        G Q+H L +K   + +V VA +LV 
Sbjct: 232 AVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVS 291

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK   +++A R+F  M   ++V+WN M+ G  QNG   +A++L  DM +    PD VT
Sbjct: 292 MYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVT 351

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           LAS+L +   L+   + +++H Y ++N     + + +AL++ Y KC  +  A   F + K
Sbjct: 352 LASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATK 411

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             D+V  +++I  Y  + +S+ ++++F  +L+  ++P+++     L AC+
Sbjct: 412 SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACA 461



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 167 SLLRACVQADDIEVGRRLH-----SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           +LLR CV    + +G R+H     S +L         + + LV +Y       DA  VF 
Sbjct: 41  ALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFS 100

Query: 222 EV---LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL----EGMKGDYFTFSSLVNSCG 274
            +        + WN ++  + +   G   +AV   +++       + D  T   +V SC 
Sbjct: 101 SLPRAAAAAALPWNWLIRGFTMA--GHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA 158

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
            LG+  LGR +H        D D+ V ++L+ MYA  G +D A  VFDGM  ++ V WN 
Sbjct: 159 ALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNV 218

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G+ + GD   AV L R M      P+  TLA  LS C + +      Q+H  A+K G
Sbjct: 219 MMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYG 278

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           ++  +++ N L++ Y+KC  +  A + FG +   DLVTW  +I     +GL  +++ +F 
Sbjct: 279 LEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFC 338

Query: 455 KMLSHAVRPDSIAFLEVLSACS 476
            M    ++PDS+    +L A +
Sbjct: 339 DMQKSGLQPDSVTLASLLPALT 360



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 140/264 (53%), Gaps = 3/264 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A    ++ G++LH +++K     +  +++ ++ +Y KC   D    +F +M  
Sbjct: 454 ASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSA 513

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ VTWN++IS     G        FR+M+++ V+ +++T +S+L AC     I  G+ +
Sbjct: 514 KDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEI 573

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I+K     + F  SAL+D+YGKCG +E A RVF+ +  ++ V WN ++S Y  + L 
Sbjct: 574 HGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLV 633

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             ++ +   M+ EG K D+ TF +L+++C   G  + G R    +  +   +  V   + 
Sbjct: 634 KESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSC 693

Query: 304 LVDMYAKNGNIDDACRVFDGMTAK 327
           +VD+Y++ G +D A +    M  K
Sbjct: 694 MVDLYSRAGKLDKAMQFIADMPFK 717



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 116/299 (38%), Gaps = 18/299 (6%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL------VATSLVDMYAKNGNIDDA 317
           +   +L+  C       LG +IH   +     LD        + T LV MY       DA
Sbjct: 37  YRLLALLRGCVAPSHLPLGLRIHARAVTSGL-LDAAGPGPAALQTRLVGMYVLARRFRDA 95

Query: 318 CRVFDGMT---AKNVVSWNTMVVGFGQNGDGREAVKLLRDML--QGSFCPDEVTLASILS 372
             VF  +    A   + WN ++ GF   G  R AV     M     S  PD  TL  ++ 
Sbjct: 96  VAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVK 155

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           SC +L      R VH      G+   + + +ALI  Y+  G + GA + F  + E D V 
Sbjct: 156 SCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVL 215

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W  ++  Y   G    ++ +F  M +    P+       LS C+    +  G++   L +
Sbjct: 216 WNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAV 275

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD--TLGAFIGACKVHGSI 549
             Y + P+      L  +  +   L EA+ L   M   PR D  T    I  C  +G +
Sbjct: 276 K-YGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLM---PRDDLVTWNGMISGCVQNGLV 330


>gi|125599757|gb|EAZ39333.1| hypothetical protein OsJ_23759 [Oryza sativa Japonica Group]
          Length = 484

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 284/469 (60%), Gaps = 46/469 (9%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G G +  V++AL D Y K G V+ ARRVFDE   RD VLWNVMVSCY+ + L
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS---------KLGRQIHGLVIKQSF 294
                 VF  MR  G  GD FTFS+L++   +  SS          LG  +HG+VI+   
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIRLGL 147

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            LDV+VAT+L+D+                                     G+EA  L   
Sbjct: 148 HLDVVVATALLDI-------------------------------------GKEAFDLFVS 170

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M++  FCPDE+TLAS+LSSC  ++ + E  Q+HAY ++ G+Q FL + NALI AY K G 
Sbjct: 171 MMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGF 230

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  A + FG +  PDLVTW+S++ ++A+ GL+K +I++F++ML   +R D IAFL VLSA
Sbjct: 231 VQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSA 290

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           CSH GL+ +G +YF LM  DY I P  +H  CL DLLGR G + +AY+ L +M  +   D
Sbjct: 291 CSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVD 350

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
            +GAF+GAC++ G+I  AKWAA +L  L+P  P+NY L+SN YA+   W ++A++R +MR
Sbjct: 351 VIGAFLGACRMRGNIESAKWAASRLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMR 410

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           + C +KVPGCSWIEI G + TFVS+D    Q+  M  M+  +  L+E++
Sbjct: 411 NMCGNKVPGCSWIEIGGIVQTFVSNDMMLHQSREMQRMMELLVSLVEQD 459



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 136/329 (41%), Gaps = 65/329 (19%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K    D   ++FDE  +R+ V WN ++S     G+
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLL--RA-----CVQADD--IEVGRRLHSFILK 190
           +    +V    RR        D  TF++LL  RA     C    +  + +G  +H  +++
Sbjct: 88  VRECWDVFGSMRRSGFPG---DGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIR 144

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
           +G  L+  V++AL+D                                     +G  A  +
Sbjct: 145 LGLHLDVVVATALLD-------------------------------------IGKEAFDL 167

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F  M   G   D  T +SL++SC  + ++    Q+H   +++     + V  +L+  Y K
Sbjct: 168 FVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGK 227

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
           NG + +A R F  +   ++V+W++MV  F   G  + A+ L   MLQ     D +    +
Sbjct: 228 NGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGV 287

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           LS+C            HA  I++G + FL
Sbjct: 288 LSACS-----------HAGLIEDGFKYFL 305



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 3/183 (1%)

Query: 137 SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           + +++ G      F  M+      D +T  SLL +C          +LH++ ++ G    
Sbjct: 155 TALLDIGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDF 214

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+  YGK GFV++A+R F  +   DLV W+ MVS +A   L   AI +F+ M  
Sbjct: 215 LQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQ 274

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNI 314
           +G++ D   F  ++++C   G  + G + + L++ + + +D        LVD+  + G I
Sbjct: 275 QGIRADGIAFLGVLSACSHAGLIEDGFK-YFLLMTRDYKIDPTPQHLACLVDLLGRAGRI 333

Query: 315 DDA 317
            DA
Sbjct: 334 RDA 336



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A      +  QLH++ ++ GL + L + N ++  Y K     + ++ F  +   ++
Sbjct: 187 LSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDL 246

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTW++++S     G   +    F RML   +R D I F  +L AC  A  IE G + +  
Sbjct: 247 VTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK-YFL 305

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLC 225
           ++   + ++      + LVDL G+ G + DA      + C
Sbjct: 306 LMTRDYKIDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSC 345


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 328/573 (57%), Gaps = 2/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L++S +   L++G+++H  ++  G  + L     V+++Y KC+  +D  K+F+ M 
Sbjct: 145 FTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP 204

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNT+++G    G          +M     + D IT  S+L A      + +GR 
Sbjct: 205 QRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS 264

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +  + GF     V++A++D Y KCG V  AR VF  +  R++V WN M+  YA N  
Sbjct: 265 IHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGE 324

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A A F  M  EG++    +    +++C  LG  + GR +H L+ ++    DV V  S
Sbjct: 325 SEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNS 384

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY+K   +D A  VF  +  K VV+WN M++G+ QNG   EA+ L  +M      PD
Sbjct: 385 LISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPD 444

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL S++++   LS++ + + +H  AI+  +   + +  ALI+ ++KCG+I  A + F 
Sbjct: 445 SFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFD 504

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++E  ++TW ++I  Y  +G  +E++++F +M + +V+P+ I FL V++ACSH GLV E
Sbjct: 505 LMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEE 564

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ YF  M  +Y + P  +HY  + DLLGR G L +A+  +  MP++P    LGA +GAC
Sbjct: 565 GMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGAC 624

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H ++ L +  A++L +L+P     + L++N+YAS   W  VAR+R  M      K PG
Sbjct: 625 RIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPG 684

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           CS +E+  E+HTF S   +HPQ+  +YA L T+
Sbjct: 685 CSLVELRNEVHTFYSGSTNHPQSKRIYAYLETL 717



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 257/530 (48%), Gaps = 48/530 (9%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++  Q+   I+K G  N+   Q +++ ++ K  +  +  ++F+ +  +  V ++T++ G
Sbjct: 57  LKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKG 116

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                   +   ++ RM  D V      F  LL+   +  D+  GR +H  ++  GF  N
Sbjct: 117 YAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSN 176

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F  +A+V+LY KC  +EDA ++F+ +  RDLV WN +V+ YA N     A+ V   M+ 
Sbjct: 177 LFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQE 236

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G K D  T  S++ +   L + ++GR IHG   +  F+  V VAT+++D Y K G++  
Sbjct: 237 AGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRS 296

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF GM+++NVVSWNTM+ G+ QNG+  EA      ML     P  V++   L +C +
Sbjct: 297 ARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACAN 356

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      R VH    +  +   +S+ N+LI+ YSKC  +  A   FG++K   +VTW ++
Sbjct: 357 LGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAM 416

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HG------- 478
           I  YA +G   E++ +F +M SH ++PDS   + V++A +           HG       
Sbjct: 417 ILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLM 476

Query: 479 -----------------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
                            G +    + F+LM  + H++     +  + D  G  G   EA 
Sbjct: 477 DKNVFVCTALIDTHAKCGAIQTARKLFDLM-QERHVIT----WNAMIDGYGTNGHGREAL 531

Query: 522 DLLASM---PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE---LEPS 565
           DL   M    ++P   T  + I AC   G +    +  E + E   LEP+
Sbjct: 532 DLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPT 581


>gi|354805156|gb|AER41576.1| pentatricopeptide [Oryza brachyantha]
          Length = 448

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/423 (45%), Positives = 276/423 (65%), Gaps = 14/423 (3%)

Query: 181 GRR----LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           GRR    +H   +K G G +  V++AL D Y K G    ARRVFDE   +D VLWNV++S
Sbjct: 21  GRRACAGIHPLAVKSGSGSDARVATALADAYAKSGSASCARRVFDETSLKDQVLWNVIIS 80

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN------SCGTLGSSKL----GRQIH 286
           CY+ + L   +  +F  MR  G+ GD FTFS+LV+      S    G + L    GR  H
Sbjct: 81  CYSSHGLVRESWDLFGSMRCAGLCGDGFTFSALVSVRASSSSSSCYGHANLLLLMGRSAH 140

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           G+VI+    LDV+VAT+L+DMYAK+G + +A RVFD M  +N +SWN ++V +G++G G+
Sbjct: 141 GIVIRLGLHLDVVVATALLDMYAKSGQVAEASRVFDAMALRNTISWNAIIVCYGKHGRGK 200

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA  L   M++   CPDE+TLAS+LSSC  ++ + E  Q+HAY +K G+Q FL + NALI
Sbjct: 201 EAFDLFVWMMRDGCCPDELTLASLLSSCADMAAAYEAIQLHAYTVKRGLQDFLQVGNALI 260

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            AY K G +  A + FG +  PDLVTW+S++ ++A+ GL+K +I +F++M+   +  D I
Sbjct: 261 MAYGKNGFVHEAKRAFGLIHNPDLVTWSSMVSSFAYLGLAKSAIHLFDRMVQQGIHADGI 320

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
           AFL  LSACSH GL+ +G +YF LM+ DY I P  +H  CL DLLGR G + +AYD L +
Sbjct: 321 AFLGALSACSHAGLIEDGFKYFLLMVRDYKIDPTPQHLACLVDLLGRAGRIKDAYDFLVN 380

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           +  E   D +GAF+GAC++ G+I  AKWAA +L  L+P+ P+NY L+SN YA+   W D+
Sbjct: 381 LSCEADVDVIGAFLGACRMQGNIQSAKWAASRLFSLKPNDPINYLLISNTYAAVGAWRDL 440

Query: 587 ARL 589
           A++
Sbjct: 441 AKV 443



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 157/330 (47%), Gaps = 29/330 (8%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H   +K G  +   +   +   Y K  +     ++FDE  +++ V WN +IS     G+
Sbjct: 28  IHPLAVKSGSGSDARVATALADAYAKSGSASCARRVFDETSLKDQVLWNVIISCYSSHGL 87

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLL--RACVQADD--------IEVGRRLHSFIL 189
           +    ++   F  M    +  D  TF++L+  RA   +          + +GR  H  ++
Sbjct: 88  VRESWDL---FGSMRCAGLCGDGFTFSALVSVRASSSSSSCYGHANLLLLMGRSAHGIVI 144

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           ++G  L+  V++AL+D+Y K G V +A RVFD +  R+ + WN ++ CY  +  G  A  
Sbjct: 145 RLGLHLDVVVATALLDMYAKSGQVAEASRVFDAMALRNTISWNAIIVCYGKHGRGKEAFD 204

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +F  M  +G   D  T +SL++SC  + ++    Q+H   +K+     + V  +L+  Y 
Sbjct: 205 LFVWMMRDGCCPDELTLASLLSSCADMAAAYEAIQLHAYTVKRGLQDFLQVGNALIMAYG 264

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           KNG + +A R F  +   ++V+W++MV  F   G  + A+ L   M+Q     D +    
Sbjct: 265 KNGFVHEAKRAFGLIHNPDLVTWSSMVSSFAYLGLAKSAIHLFDRMVQQGIHADGIAFLG 324

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            LS+C            HA  I++G + FL
Sbjct: 325 ALSACS-----------HAGLIEDGFKYFL 343



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 3/243 (1%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI- 136
            L  G+  H  +++LGL   + +   +L +Y K     +  ++FD M +RN ++WN +I 
Sbjct: 132 LLLMGRSAHGIVIRLGLHLDVVVATALLDMYAKSGQVAEASRVFDAMALRNTISWNAIIV 191

Query: 137 -SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
             G    G      F  M+ D    D +T  SLL +C          +LH++ +K G   
Sbjct: 192 CYGKHGRGKEAFDLFVWMMRDGCCPDELTLASLLSSCADMAAAYEAIQLHAYTVKRGLQD 251

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
              V +AL+  YGK GFV +A+R F  +   DLV W+ MVS +A   L   AI +F+ M 
Sbjct: 252 FLQVGNALIMAYGKNGFVHEAKRAFGLIHNPDLVTWSSMVSSFAYLGLAKSAIHLFDRMV 311

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNI 314
            +G+  D   F   +++C   G  + G +   L+++    D        LVD+  + G I
Sbjct: 312 QQGIHADGIAFLGALSACSHAGLIEDGFKYFLLMVRDYKIDPTPQHLACLVDLLGRAGRI 371

Query: 315 DDA 317
            DA
Sbjct: 372 KDA 374


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 319/576 (55%), Gaps = 40/576 (6%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLL-- 155
           L  +N +L      +   DM++LF  M  R+ V++N LI+G    G           L  
Sbjct: 76  LFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLR 135

Query: 156 -------DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
                    VR   IT + ++ A     D  +GR++H  I+++GFG   F  S LVD+Y 
Sbjct: 136 EEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYA 195

Query: 209 KCGFVEDARRVFDEVLC-------------------------------RDLVLWNVMVSC 237
           K G + DA+RVFDE++                                RD + W  MV+ 
Sbjct: 196 KMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTG 255

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
              N L   A+ VF  MR EG+  D +TF S++ +CG L +S+ G+QIH   I+  +D +
Sbjct: 256 LTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGN 315

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + V ++LVDMY+K  +I  A  VF  MT KN++SW  M+VG+GQNG G EAV++  +M  
Sbjct: 316 IFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQT 375

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P++ TL S++SSC +L+   E  Q H  A+ +G++ ++++ +AL+  Y KCGSI  
Sbjct: 376 DGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIED 435

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + F  +   D V++T+++  YA  G +KE+I++FEKML   V+P+ + F+ VLSACS 
Sbjct: 436 AHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSR 495

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV +G  YF+ M  D+ I+   +HYTC+ DL  R G L EA + +  MP  P +    
Sbjct: 496 SGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWA 555

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             + AC++ G + + KWAAE LL+ +P  P +Y L+ +++AS+  W +VA LR+ MRD  
Sbjct: 556 TLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQ 615

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             K PGCSWI+    +H F + D+SHP +  +Y  L
Sbjct: 616 VKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKL 651



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 188/402 (46%), Gaps = 43/402 (10%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            N LL A  ++  + + RRL   +       N F  +AL+        + D  R+F  + 
Sbjct: 48  LNHLLTAYARSGRLPLARRLFDAMPDP----NLFTRNALLSALAHARLLPDMDRLFASMP 103

Query: 225 CRDLVLWNVMVSCYA-LNCLGDGAIAVFNLMRLEG------MKGDYFTFSSLVNSCGTLG 277
            RD V +N +++ ++        A A   L+R E       ++    T S +V +   LG
Sbjct: 104 QRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALG 163

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV------- 330
              LGRQ+H  +++  F       + LVDMYAK G I DA RVFD M  KNVV       
Sbjct: 164 DRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMIT 223

Query: 331 ------------------------SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
                                   +W TMV G  QNG   EA+ + R M       D+ T
Sbjct: 224 GLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYT 283

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             SIL++CG+L+ S E +Q+HAY I+      + + +AL++ YSKC SI  A   F  + 
Sbjct: 284 FGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMT 343

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++++WT++I  Y  +G  +E++ VF +M +  ++P+      V+S+C++   + EG +
Sbjct: 344 CKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ 403

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            F+ M     + P     + L  L G+ G + +A+ L   MP
Sbjct: 404 -FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMP 444


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/614 (34%), Positives = 331/614 (53%), Gaps = 71/614 (11%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            +++H+ I+K    +++ +QN+++  Y KC  F+D  K+FD M  RN  ++N ++S +  
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 142 CGG---------------------------------NVTPYFRRMLLDNVRLDHITFNSL 168
            G                                      +F  M  ++  L+  +F S 
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L AC    D+ +G ++H+ I K  + L+ ++ SALVD+Y KCG V  A+R FD +  R++
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN +++CY  N     A+ VF +M   G++ D  T +S+V++C +  + + G QIH  
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277

Query: 289 VIKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFD------------------------- 322
           V+K+  +  D+++  +LVDMYAK   +++A  VFD                         
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKA 337

Query: 323 ------GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
                  M  KNVVSWN ++ G+ QNG+  EAV+L   + + S  P   T  ++L++C +
Sbjct: 338 ARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397

Query: 377 LSISCETRQVHAYAIKNGV------QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L+     RQ H   +K+G       ++ + + N+LI+ Y KCG +      F  + E D+
Sbjct: 398 LADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDV 457

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+W ++I  YA +G    ++E+F KML    +PD +  + VLSACSH GLV EG RYF+ 
Sbjct: 458 VSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHS 517

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M ++  + P  +H+TC+ DLLGR G L EA DL+ +MP++P +   G+ + ACKVHG+I 
Sbjct: 518 MRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIE 577

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           L K+ AEKL+E++P     Y L+SN+YA    W DV R+RK MR     K PGCSWIEI 
Sbjct: 578 LGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQ 637

Query: 611 GEIHTFVSSDRSHP 624
             +H F+  D+ HP
Sbjct: 638 SRVHVFMVKDKRHP 651



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 223/468 (47%), Gaps = 45/468 (9%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKL 92
           ++   +HDR      LR    +H      + + +  AL   A    L  G Q+H+ I K 
Sbjct: 123 VSGFAQHDR--FEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKS 180

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYF 150
                + + + ++ +Y KC      ++ FD M VRNIV+WN+LI+     G  G     F
Sbjct: 181 RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF 240

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV-SSALVDLYGK 209
             M+ + V  D IT  S++ AC     I  G ++H+ ++K     N  V  +ALVD+Y K
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300

Query: 210 CGFVEDARRVFDEVLCRDLVL-------------------------------WNVMVSCY 238
           C  V +AR VFD +  R++V                                WN +++ Y
Sbjct: 301 CRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGY 360

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF---- 294
             N   + A+ +F L++ E +   ++TF +L+N+C  L   KLGRQ H  ++K  F    
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQS 420

Query: 295 --DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             + D+ V  SL+DMY K G ++D C VF+ M  ++VVSWN M+VG+ QNG G  A+++ 
Sbjct: 421 GEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIF 480

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSK 411
           R ML     PD VT+  +LS+C    +  E R+  H+   + G+         +++   +
Sbjct: 481 RKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGR 540

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            G +  A     ++  +PD V W S++ A   HG  +    V EK++ 
Sbjct: 541 AGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLME 588



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 189/381 (49%), Gaps = 63/381 (16%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD   F  LL +CV++      RR+H+ I+K  F    F+ + LVD YGKCG+ EDAR+V
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 220 FDEVLCR-------------------------------DLVLWNVMVSCYALNCLGDGAI 248
           FD +  R                               D   WN MVS +A +   + A+
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
             F  M  E    + ++F S +++C  L    +G QIH L+ K  + LDV + ++LVDMY
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMY 196

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           +K G +  A R FDGM  +N+VSWN+++  + QNG   +A+++   M+     PDE+TLA
Sbjct: 197 SKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLA 256

Query: 369 SILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKC--------------- 412
           S++S+C S S   E  Q+HA  +K +  +  L + NAL++ Y+KC               
Sbjct: 257 SVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 413 ----------------GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
                            S+  A   F ++ E ++V+W ++I  Y  +G ++E++ +F  +
Sbjct: 317 RNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 457 LSHAVRPDSIAFLEVLSACSH 477
              ++ P    F  +L+AC++
Sbjct: 377 KRESIWPTHYTFGNLLNACAN 397



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 36/205 (17%)

Query: 356 LQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-- 412
           L G  C  D    A +L SC       + R++HA  IK    + + I+N L++AY KC  
Sbjct: 10  LVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGY 69

Query: 413 -----------------------------GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
                                        G +  A   F S+ EPD  +W +++  +A H
Sbjct: 70  FEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQH 129

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503
              +E++  F  M S     +  +F   LSAC+    ++ G++  + +IS    L D   
Sbjct: 130 DRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQ-IHALISKSRYLLDVYM 188

Query: 504 YTCLTDLLGRVGLLV---EAYDLLA 525
            + L D+  + G++     A+D +A
Sbjct: 189 GSALVDMYSKCGVVACAQRAFDGMA 213


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/614 (35%), Positives = 325/614 (52%), Gaps = 90/614 (14%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           +H+ I+      ++ +QN+++ VY KC   DD  KLFD M  RN  TWN+LIS +   G 
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 144 --------GNVTP------------------------YFRRMLLDNVRLDHITFNSLLRA 171
                   G++                          YF +M  ++  L+  +F S L A
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C    D+ +G ++H+ + K  +  + ++ SAL+D+Y KCG V  A  VF  ++ R+LV W
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +++CY  N     A+ VF  M   G++ D  T +S+V++C +L + K G QIH  V+K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 292 -QSFDLDVLVATSLVDMYAKNGNIDDACRVFD---------------------------- 322
              F  D+++  +LVDMYAK   +++A RVFD                            
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336

Query: 323 ---GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
               MT +NVVSWN ++ G+ QNG+  EA++L R + + S  P   T  ++L S      
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS------ 390

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                              + + N+LI+ Y KCGSI    + F  +KE D V+W +II  
Sbjct: 391 ------------------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVG 432

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA +G   E++++F KML    +PD +  + VL ACSH GLV EG  YF   + ++ ++P
Sbjct: 433 YAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYF-FSMEEHGLIP 491

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             +HYTC+ DLLGR G L EA +L+ +MP+ P +   G+ + ACKVHG+I + K AAEKL
Sbjct: 492 LKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKL 551

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           LE++P     Y L+SN+YA    W DV R+RK+MR     K PGCSWIE+   +H F+  
Sbjct: 552 LEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVK 611

Query: 620 DRSHPQAVHMYAML 633
           D+SHP    +Y++L
Sbjct: 612 DKSHPHRKQIYSVL 625



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 190/373 (50%), Gaps = 39/373 (10%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  LL +C+++      R +H+ IL   F +  F+ + L+D+YGKC  ++DAR++FD + 
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 225 CR-------------------------------DLVLWNVMVSCYALNCLGDGAIAVFNL 253
            R                               D   WN MVS +A +   + ++  F  
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVK 137

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  E    + ++F S +++C  L    +G Q+H LV K  +  DV + ++L+DMY+K G+
Sbjct: 138 MHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS 197

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A  VF GM  +N+V+WN+++  + QNG   EA+++   M+     PDEVTLAS++S+
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 374 CGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C SL    E  Q+HA  +K N  +  L + NAL++ Y+KC  +  A + F  +   ++V+
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            TS++  YA     K +  +F KM    V    +++  +++  +  G   E LR F L+ 
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 493 SDYHILPDSEHYT 505
            +  I P   HYT
Sbjct: 374 RE-SIWPT--HYT 383



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 197/438 (44%), Gaps = 81/438 (18%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  AL   A    L  G Q+H+ + K      + + + ++ +Y KC +    E++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+VTWN+LI+     G        F RM+   +  D +T  S++ AC     ++ G +
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 184 LHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFD--------------------- 221
           +H+ ++K   F  +  + +ALVD+Y KC  V +ARRVFD                     
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 222 ----------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                     ++  R++V WN +++ Y  N   + A+ +F L++ E +   ++TF +L+ 
Sbjct: 330 SVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLK 389

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           S                        D+ V  SL+DMY K G+I+D  RVF+ M  ++ VS
Sbjct: 390 S------------------------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVS 425

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN ++VG+ QNG G EA+++ R ML     PD VT+  +L +C            HA  +
Sbjct: 426 WNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS-----------HAGLV 474

Query: 392 KNGVQAFLSIEN----ALINAYSKCGSIAGALQCFGSVK--------EPDLVTWTSIIGA 439
           + G   F S+E      L + Y+    + G   C    K         PD V W S++ A
Sbjct: 475 EEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAA 534

Query: 440 YAFHGLSKESIEVFEKML 457
              HG  +      EK+L
Sbjct: 535 CKVHGNIEMGKHAAEKLL 552



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 138/295 (46%), Gaps = 31/295 (10%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F+ L++SC    S++  R +H  ++   F +++ +   L+D+Y K   +DDA ++FD M 
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 326 AKNVV-------------------------------SWNTMVVGFGQNGDGREAVKLLRD 354
            +N                                 SWN+MV GF Q+    E+++    
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVK 137

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M +  F  +E +  S LS+C  L       QVHA   K+     + + +ALI+ YSKCGS
Sbjct: 138 MHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS 197

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +A A + F  + E +LVTW S+I  Y  +G + E++EVF +M+   + PD +    V+SA
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
           C+    + EGL+    ++       D      L D+  +   + EA  +   M I
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 51/263 (19%)

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L+RD+    + P+    A +L SC     +  TR VHA  +       + I+N LI+ Y 
Sbjct: 6   LVRDL----YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 411 KC-------------------------------GSIAGALQCFGSVKEPDLVTWTSIIGA 439
           KC                               G +  A + FGS+ EPD  +W S++  
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           +A H   +ES+E F KM       +  +F   LSAC+       GL   N+    + ++ 
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACA-------GLMDLNMGTQVHALVS 174

Query: 500 DSEHYT------CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            S + T       L D+  + G +  A ++ + M IE    T  + I   + +G    A 
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQNGPASEAL 233

Query: 554 WAAEKLLE--LEPSKPVNYALVS 574
               ++++  LEP +    ++VS
Sbjct: 234 EVFVRMMDSGLEPDEVTLASVVS 256


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 322/575 (56%), Gaps = 4/575 (0%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S ++   +  A    L+ G QLH H +K      + +    L +Y+KC    D +KLF
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 122 DEMRVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRAC-VQADDI 178
           + +   N+ ++N +I G      G      FR +    + LD ++ +   RAC V   D+
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDL 393

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           E G ++H   +K     N  V++A++D+YGKCG + +A  VF+E++ RD V WN +++ +
Sbjct: 394 E-GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAH 452

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   +  +++F  M   GM+ D FT+ S++ +C    +   G +IH  +IK    LD 
Sbjct: 453 EQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDS 512

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V  +L+DMY+K G ++ A ++ D +  + VVSWN ++ GF       EA K    ML+ 
Sbjct: 513 FVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 572

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD  T A+IL +C +L      +Q+HA  IK  +Q+   I + L++ YSKCG++   
Sbjct: 573 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDF 632

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F      D VTW +++  YA HGL +E++++FE M    V+P+   FL VL AC H 
Sbjct: 633 QLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHM 692

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLV +GL YF+ M+S+Y + P  EHY+C+ D++GR G + +A +L+  MP E  +     
Sbjct: 693 GLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRT 752

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +  CK+HG++ +A+ AA  +L+LEP     Y L+SN+YA+   W +V +LRKMMR N  
Sbjct: 753 LLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGL 812

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            K PGCSWIEI  E+H F+  D++HP++  +Y  L
Sbjct: 813 KKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENL 847



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 251/501 (50%), Gaps = 34/501 (6%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC---- 111
           +++T +    +S   +  +    L  GKQ H+ ++       + + N ++ +Y+KC    
Sbjct: 35  YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLE 94

Query: 112 ---KAFDDM------------------------EKLFDEMRVRNIVTWNTLISGIINCGG 144
              K FD M                        +KLFD M  R++V+WN+LISG ++ G 
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGD 154

Query: 145 N--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           +  V   F +M       D  TF  +L++C   +D   G ++H   +K+GF  +    SA
Sbjct: 155 HRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSA 214

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D+Y KC  ++ + + F  +  ++ V W+ +++    N    G + +F  M+  G+   
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVS 274

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF+S+  SC  L + +LG Q+HG  +K  F  DV++ T+ +DMY K  N+ DA ++F+
Sbjct: 275 QSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFN 334

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +   N+ S+N ++VG+ ++  G EA+ + R + +     DEV+L+    +C  +    E
Sbjct: 335 SLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLE 394

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             QVH  ++K+  Q+ + + NA+++ Y KCG++  A   F  +   D V+W +II A+  
Sbjct: 395 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 454

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +G  ++++ +F  ML   + PD   +  VL AC+    ++ G+   N +I     L DS 
Sbjct: 455 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGL-DSF 513

Query: 503 HYTCLTDLLGRVGLLVEAYDL 523
               L D+  + G++ +A  L
Sbjct: 514 VGIALIDMYSKCGMMEKAEKL 534


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 322/557 (57%), Gaps = 2/557 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+++H  +M+ GL N  ++ N ++ +Y KC +  D  ++FD M  R+ V+W TL   
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        +  ML + VR   IT+ ++L AC     +E G+++H+ I++     +
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSD 280

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             VS+AL  +Y KCG V+DAR VF+ +  RD++ WN M+     +   + A  +F+ M  
Sbjct: 281 VRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E +  D  T+ +++++C   G    G++IH   +K     DV    +L++MY+K G++ D
Sbjct: 341 ECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKD 400

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  ++VVSW  +V G+   G   E+    + MLQ     +++T   +L +C +
Sbjct: 401 ARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSN 460

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  +++HA  +K G+ A L++ NAL++ Y KCGS+  A++    +   D+VTW ++
Sbjct: 461 PVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTL 520

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A +G   E+++ FE M S  +RP++  F+ V+SAC    LV EG R F  M  DY 
Sbjct: 521 IGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYG 580

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  +HY C+ D+L R G L EA D++ +MP +P +   GA + AC+ HG++ + + AA
Sbjct: 581 IVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAA 640

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E+ L+LEP     Y  +S +YA+   W DVA+LRK+M++    K PG SWIE+AGE+H+F
Sbjct: 641 EQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSF 700

Query: 617 VSSDRSHPQAVHMYAML 633
           V+ D+SHP+   +Y+ L
Sbjct: 701 VAGDQSHPRTEEIYSEL 717



 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 272/527 (51%), Gaps = 36/527 (6%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +H+      S+ Y + L+   K   L  GKQ+H HI++ G+   + + N +L +YV C +
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRA 171
            ++  +LFD+   +++V+WN +ISG  + G     +  F  M  + +  D  TF S+L A
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C     +  GR +H  +++ G   N  V +AL+ +Y KCG V DARRVFD +  RD V W
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 214

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
             +   YA +     ++  ++ M  EG++    T+ +++++CG+L + + G+QIH  +++
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE 274

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                DV V+T+L  MY K G + DA  VF+ +  ++V++WNTM+ G   +G   EA  +
Sbjct: 275 SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGM 334

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              ML+    PD VT  +ILS+C         +++HA A+K+G+ + +   NALIN YSK
Sbjct: 335 FHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSK 394

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
            GS+  A Q F  + + D+V+WT+++G YA  G   ES   F+KML   V  + I ++ V
Sbjct: 395 AGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCV 454

Query: 472 LSACS-----------HGGLVSEGL------------RYFN-------LMISDYHILPDS 501
           L ACS           H  +V  G+             YF        + +S+     D 
Sbjct: 455 LKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDV 514

Query: 502 EHYTCLTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKV 545
             +  L   L + G  +EA   ++++ S  + P + T    + AC+V
Sbjct: 515 VTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRV 561



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 218/428 (50%), Gaps = 8/428 (1%)

Query: 32  TTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           TT+T A         S       + E    +   Y   L        L++GKQ+H+ I++
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE 274

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPY 149
               + + +   +  +Y+KC A  D  ++F+ +  R+++ WNT+I G+++ G        
Sbjct: 275 SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGM 334

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F RML + V  D +T+ ++L AC +   +  G+ +H+  +K G   +    +AL+++Y K
Sbjct: 335 FHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSK 394

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
            G ++DAR+VFD +  RD+V W  +V  YA       + + F  M  +G++ +  T+  +
Sbjct: 395 AGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCV 454

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + +C    + K G++IH  V+K     D+ VA +L+ MY K G+++DA RV +GM+ ++V
Sbjct: 455 LKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDV 514

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+WNT++ G  QNG G EA++    M      P+  T  +++S+C   ++  E R+  A 
Sbjct: 515 VTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFAS 574

Query: 390 AIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSK 447
             K+ G+         +++  ++ G +  A     ++  +P    W +++ A   HG   
Sbjct: 575 MRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHG--- 631

Query: 448 ESIEVFEK 455
            ++E+ E+
Sbjct: 632 -NVEIGEQ 638



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 155/280 (55%), Gaps = 3/280 (1%)

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           V   +  +G + D + +  L+ SC       +G+Q+H  +++     +V +  +L+ +Y 
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYV 90

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
             G++++A R+FD  + K+VVSWN M+ G+   G G+EA  L   M Q    PD+ T  S
Sbjct: 91  HCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVS 150

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           ILS+C S +     R+VH   ++ G+    ++ NALI+ Y+KCGS+  A + F ++   D
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRD 210

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YF 488
            V+WT++ GAYA  G ++ES++ +  ML   VRP  I ++ VLSAC     + +G + + 
Sbjct: 211 EVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHA 270

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            ++ S++H   D    T LT +  + G + +A ++   +P
Sbjct: 271 QIVESEHH--SDVRVSTALTKMYIKCGAVKDAREVFECLP 308


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/586 (34%), Positives = 329/586 (56%), Gaps = 5/586 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L + A     + G QLH  ++  G      + N ++ +Y K     D  KLF+ M 
Sbjct: 76  FASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMP 135

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+VTWN +I+G +  G     +  F  M+   V  D ITF S L +  ++  ++ G+ 
Sbjct: 136 DTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKE 195

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +IL+ G  L+ F+ SAL+D+Y KC  V  A ++F +    D+V+   ++S Y LN L
Sbjct: 196 IHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGL 255

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F  +  E M  +  T +S++ +C  L +  LG+++H  ++K   D    V ++
Sbjct: 256 NNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSA 315

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMYAK G +D A ++F  M  K+ V WN ++    QNG  +EA+ L R M +     D
Sbjct: 316 IMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYD 375

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V++++ LS+C +L      + +H++ IK    + +  E+ALI+ Y KCG+++ A   F 
Sbjct: 376 CVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFD 435

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++E + V+W SII AY  HG  + S+ +F KML   ++PD + FL +LSAC H G V +
Sbjct: 436 MMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDK 495

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G++YF  M  +Y I    EHY C+ DL GR G L EA++ + +MP  P     G  +GAC
Sbjct: 496 GIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGAC 555

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           +VHG++ LA+ A+  LL+L+P     Y L+SNV+A    W  V ++R +M+     KVPG
Sbjct: 556 RVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPG 615

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHC 649
            SWIE+    H FV++D SHP++  +Y++L     L+ E    G+C
Sbjct: 616 YSWIEVNKTTHMFVAADGSHPESAQIYSVLNN---LLLELRKEGYC 658



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 242/464 (52%), Gaps = 8/464 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           + ++ +Y +    +D  +LFD+M  ++ V WN +++G + CG   +    F  M     +
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            + ITF S+L  C      E G +LH  ++  GF  +  V++ALV +Y K G + DA ++
Sbjct: 71  PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKL 130

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+ +   ++V WN M++ +  N   D A  +F+ M   G+  D  TF+S + S     S 
Sbjct: 131 FNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASL 190

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           K G++IHG +++    LDV + ++L+D+Y K  ++  AC++F   T  ++V    ++ G+
Sbjct: 191 KQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGY 250

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             NG   +A+++ R +L+    P+ VTLAS+L +C  L+     +++HA  +K+G+    
Sbjct: 251 VLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERR 310

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + +A+++ Y+KCG +  A Q F  + E D V W +II   + +G  +E+I++F +M   
Sbjct: 311 HVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGRE 370

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGRVGLL 517
            +  D ++    LSAC++   +  G    + MI       DSE +  + L D+ G+ G L
Sbjct: 371 GLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAF---DSEVFAESALIDMYGKCGNL 427

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
             A  +   M  E    +  + I A   HG + ++     K+LE
Sbjct: 428 SVARCVFDMMR-EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE 470



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 198/358 (55%), Gaps = 4/358 (1%)

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
           +GF ++ FV S+L+ LY + G +EDARR+FD++  +D VLWNVM++ +      + A+ V
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F  MR    K +  TF+S+++ C +   S+ G Q+HGLVI   F  D LVA +LV MY+K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G + DA ++F+ M   NVV+WN M+ GF QNG   EA  L  +M+     PD +T AS 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L S    +   + +++H Y +++G+   + +++ALI+ Y KC  +  A + F      D+
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V  T+II  Y  +GL+ +++E+F  +L   + P+++    VL AC+    ++ G      
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 491 MISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           ++   H L +  H  + + D+  + G L  AY +   MP E  +    A I  C  +G
Sbjct: 301 ILK--HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNCSQNG 355


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/528 (36%), Positives = 308/528 (58%), Gaps = 4/528 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQAD 176
           L  ++R  N+  +N +I G+     +       +++ML   +  D+ T   +L+AC ++ 
Sbjct: 80  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 139

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +  G  +H   +K+G   + +VS+ L+ +Y  C  +  AR+VFD    RDLV W  M+ 
Sbjct: 140 AVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQ 199

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FD 295
            Y         + +F  M  E ++ D  T   +++SC  LG  +LGR++H  +I+ S  +
Sbjct: 200 GYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVN 259

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           LDV V  +LVDMY K G+ + A +VF  M  KNVVSWN+M+ G  Q G  +E++ + R M
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM 319

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            +    PD+VTL ++L+SC +L +    + VHAY  +N ++A   I NAL++ Y+KCGSI
Sbjct: 320 QRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSI 379

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F ++   D+ ++T++I   A HG   +++++F +M    + PD + F+ VL+AC
Sbjct: 380 DQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTAC 439

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GLV EG +YF  M + Y++ P  EHY C+ DLLGR GL+ EA + + +MPIEP +  
Sbjct: 440 SHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFV 499

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
           LGA +GACK+HG + L +   +K+ ++EP K   Y L+SN+Y+S   W D  +LRK M++
Sbjct: 500 LGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKE 559

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
               K PGCS IE+ G IH F   D+SHP+   +Y +L  +   ++ N
Sbjct: 560 RNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 607



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 212/404 (52%), Gaps = 13/404 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A+   +++G+++H   +K+GL + + + N ++ +Y  C       K+FD    R++
Sbjct: 132 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 191

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W T+I G +  G        F  M  +N++ D +T   +L +C +  D+ +GR+LH +
Sbjct: 192 VSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRY 251

Query: 188 ILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           I++     L+ FV +ALVD+Y KCG    AR+VF E+  +++V WN M+S  A       
Sbjct: 252 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKE 311

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           ++ +F  M+  G+K D  T  +++NSC  LG  +LG+ +H  + +     D  +  +LVD
Sbjct: 312 SLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVD 371

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G+ID AC VF  M  K+V S+  M+VG   +G G +A+ L  +M +    PDEVT
Sbjct: 372 MYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVT 431

Query: 367 LASILSSCGSLSISCETRQVHA-----YAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
              +L++C  + +  E R+        Y ++  ++ +      +++   + G I  A + 
Sbjct: 432 FVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHY----GCMVDLLGRAGLINEAEEF 487

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
             ++  EPD     +++GA   HG  +    V +K+     R D
Sbjct: 488 IRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKD 531


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/576 (34%), Positives = 319/576 (55%), Gaps = 14/576 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LKV      L+ GK++H  ++K G    L     + ++Y KC+   +  K+FD M 
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMP 197

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLD--------NVRLDHITFNSLLRACVQADD 177
            R++V+WNT+++G    G        RM L+        N++   IT  S+L A      
Sbjct: 198 ERDLVSWNTIVAGYSQNG------MARMALEMVNLMCEENLKPSFITIVSVLPAVSALRL 251

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           I +G+ +H + ++ GF     +++ALVD+Y KCG ++ AR +FD +L R++V WN M+  
Sbjct: 252 IRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDA 311

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y  N     A+ +F  M  EG+K    +    +++C  LG  + GR IH L ++   D +
Sbjct: 312 YVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRN 371

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           V V  SL+ MY K   +D A  +F  + ++ +VSWN M++GF QNG   EA+     M  
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQA 431

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
            +  PD  T  S++++   LSI+   + +H   ++N +   + +  AL++ Y+KCG+I  
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMI 491

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  + E  + TW ++I  Y  HG+ K ++E+FE+M    +RP+ + FL V+SACSH
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSH 551

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV  GL+ F++M  +Y I P  +HY  + DLLGR G L EA+D +  MP++P  +  G
Sbjct: 552 SGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYG 611

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           A +GAC++H ++  A+  AE+L EL P     + L++N+Y +   W  V ++R  M    
Sbjct: 612 AMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQG 671

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             K PGCS +EI  E+H+F S   +HP +  +YA L
Sbjct: 672 LRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFL 707



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/529 (28%), Positives = 269/529 (50%), Gaps = 21/529 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++ + +   I K GL  +   Q +++ ++ +  + D+  ++F+ +  +  V + T++ G
Sbjct: 50  LKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKG 109

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                       +F RM  D V      F  LL+ C    ++ VG+ +H  ++K GF L+
Sbjct: 110 FAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F  + L ++Y KC  V +AR+VFD +  RDLV WN +V+ Y+ N +   A+ + NLM  
Sbjct: 170 LFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCE 229

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E +K  + T  S++ +   L   ++G++IHG  ++  FD  V +AT+LVDMYAK G++  
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKT 289

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +FDGM  +NVVSWN+M+  + QN + +EA+ + + ML     P +V++   L +C  
Sbjct: 290 ARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACAD 349

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      R +H  +++  +   +S+ N+LI+ Y KC  +  A   FG ++   +V+W ++
Sbjct: 350 LGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAM 409

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA-----CSHGGLVSEGLRYFNLM 491
           I  +A +G   E++  F +M +  V+PD+  ++ V++A      +H      G+   N +
Sbjct: 410 ILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCL 469

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
             +  +       T L D+  + G ++ A  L+  M  E    T  A I     +G+ G+
Sbjct: 470 DKNVFVT------TALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDG---YGTHGI 519

Query: 552 AKWAAEKLLELEPS--KPVNYALVSNVYASERCWFDVARLR--KMMRDN 596
            K A E   E++    +P     +S + A        A L+   MM++N
Sbjct: 520 GKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKEN 568



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 178/317 (56%), Gaps = 3/317 (0%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL  C    ++   R +   I K G        + LV L+ + G V++A RVF+ +  + 
Sbjct: 43  LLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKL 99

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            VL+  M+  +A     D A+  F  MR + ++   + F+ L+  CG     ++G++IHG
Sbjct: 100 NVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           L++K  F LD+   T L +MYAK   + +A +VFD M  +++VSWNT+V G+ QNG  R 
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A++++  M + +  P  +T+ S+L +  +L +    +++H YA++ G  + ++I  AL++
Sbjct: 220 ALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y+KCGS+  A   F  + E ++V+W S+I AY  +   KE++ +F+KML   V+P  ++
Sbjct: 280 MYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVS 339

Query: 468 FLEVLSACSHGGLVSEG 484
            +  L AC+  G +  G
Sbjct: 340 VMGALHACADLGDLERG 356


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/614 (35%), Positives = 344/614 (56%), Gaps = 9/614 (1%)

Query: 23  TPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQ 81
           TP  +   T  IT   K  RS +S QL N   + ES      +  S  L   +  G+L+ 
Sbjct: 207 TPVTW---TAIITGYTKSGRSEVSLQLFN--LMMESNVIPDKYVLSSILNACSVLGYLKG 261

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQ+H+++++      +S  N ++  Y KC      + LFD + V+NI++W T+I+G + 
Sbjct: 262 GKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQ 321

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              +         M     + D    +S+L +C   D ++ GR++HS+++KV    + FV
Sbjct: 322 NSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFV 381

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++AL+D+Y KC  ++DA+RVFD V C  +V +N M+  Y+      GA+ VF  MRL+ +
Sbjct: 382 TNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHV 441

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
              + TF SL+     L   +L +QIHGL+IK  F LD   +++L+D+Y+K   I DA  
Sbjct: 442 SPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARY 501

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+G T K++V WN++  G+       EA KL  D+      P+E T A++ ++   L+ 
Sbjct: 502 VFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILAS 561

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +Q H   +K G+++   I NAL++ Y+KCGS+  A + F S    D   W S+I  
Sbjct: 562 LPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISM 621

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG  +E++ +FE M+S+ + P+ + F+ VLSACSH G V +GL+++N M + Y I P
Sbjct: 622 YAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSM-ARYGIEP 680

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY  +  LLGR G L EA + +  M I P +    + + AC+V G++ LAK AAE  
Sbjct: 681 GIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMA 740

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           + ++P    +Y ++SN++AS+  W DV RLR  M  N   K PG SWIE+ GE+H FVS 
Sbjct: 741 ISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSR 800

Query: 620 DRSHPQAVHMYAML 633
           D+ H +   +Y  L
Sbjct: 801 DKVHDETDLIYLAL 814



 Score =  241 bits (615), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 221/392 (56%), Gaps = 7/392 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +++H  ++  GL   + L N +LH Y K  +  D   LFD+M  RN+V+W++++S     
Sbjct: 60  RKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQL 119

Query: 143 GGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
           G N         F+R  +D  +L+     S++RACVQ D  E G ++HS+++K GFG + 
Sbjct: 120 GYNEKALLYFLEFQRTCVD--KLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDV 177

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           +V ++LV LY K G ++ AR VFD ++ +  V W  +++ Y  +   + ++ +FNLM   
Sbjct: 178 YVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMES 237

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  D +  SS++N+C  LG  K G+QIH  V++    +DV     L+D Y K G +   
Sbjct: 238 NVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAG 297

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +FD +  KN++SW TM+ G+ QN    EAV+L+ +M +  + PDE   +S+L+SCGS+
Sbjct: 298 KALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSV 357

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 RQ+H+Y IK  ++    + NALI+ YSKC ++  A + F  V    +V + ++I
Sbjct: 358 DALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMI 417

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
             Y+  G    ++EVF++M    V P  + F+
Sbjct: 418 EGYSRQGYLCGALEVFQEMRLKHVSPSFLTFV 449



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 221/449 (49%), Gaps = 3/449 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G Q+HS+++K G    + +   ++ +Y K    D    +FD + ++  VTW  +I+G 
Sbjct: 159 EPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGY 218

Query: 140 INCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G +      F  M+  NV  D    +S+L AC     ++ G+++H+++L+    ++ 
Sbjct: 219 TKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDV 278

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
              + L+D Y KCG V+  + +FD +  ++++ W  M++ Y  N     A+ +   M   
Sbjct: 279 STYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRM 338

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G K D +  SS++ SCG++ + + GRQIH  VIK   + D  V  +L+DMY+K   +DDA
Sbjct: 339 GWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDA 398

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            RVFD +T  +VV +N M+ G+ + G    A+++ ++M      P  +T  S+L    +L
Sbjct: 399 KRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAAL 458

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                ++Q+H   IK G        +ALI+ YSKC  I  A   F      D+V W S+ 
Sbjct: 459 LCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLF 518

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             Y     S+E+ +++  +     RP+   F  + +A S    +  G ++ N  +    +
Sbjct: 519 SGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHN-QVMKMGL 577

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             D      L D+  + G + EA  + +S
Sbjct: 578 ESDPFITNALVDMYAKCGSVEEAEKIFSS 606



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 174/332 (52%), Gaps = 1/332 (0%)

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
           NV P        NV++      +LL A V    I   R++H  ++  G   + F+S+ L+
Sbjct: 23  NVQPMLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLL 82

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDY 263
             Y K G V DA  +FD++  R+LV W+ +VS Y      + A+  F    R    K + 
Sbjct: 83  HSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNE 142

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           +  +S++ +C      + G Q+H  VIK  F  DV V TSLV +YAK+G ID A  VFDG
Sbjct: 143 YILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDG 202

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           +  K  V+W  ++ G+ ++G    +++L   M++ +  PD+  L+SIL++C  L      
Sbjct: 203 LVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGG 262

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           +Q+HAY +++  +  +S  N LI+ Y+KCG +      F  +   ++++WT++I  Y  +
Sbjct: 263 KQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQN 322

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
               E++E+  +M     +PD  A   VL++C
Sbjct: 323 SYDWEAVELVGEMFRMGWKPDEYACSSVLTSC 354


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 334/600 (55%), Gaps = 8/600 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L V A    L  G QLH   +  GL     + N +L +Y KC+      KLFD   
Sbjct: 162 FACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP 221

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+WN +ISG +  G  G     FR M+   ++ D ITF S L    +   ++  + 
Sbjct: 222 QSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKE 281

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +I++    L+ F+ SAL+D+Y KC  VE A+++  +    D V+   M+S Y LN  
Sbjct: 282 IHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGK 341

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+  F  +  E MK    TFSS+  +   L +  LG+++HG +IK   D    V ++
Sbjct: 342 NKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSA 401

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMYAK G +D ACRVF+ +T K+ + WN+M+    QNG   EA+ L R M       D
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYD 461

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V+++  LS+C +L      +++H   IK  +++ L  E++LI+ Y+KCG++  + + F 
Sbjct: 462 CVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFD 521

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++E + V+W SII AY  HG  KE + +F +ML + ++PD + FL ++SAC H G V E
Sbjct: 522 RMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDE 581

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+RY++LM  +Y I    EHY C+ D+ GR G L EA++ + SMP  P +   G  +GAC
Sbjct: 582 GIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGAC 641

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            +HG++ LA+ A++ L +L+P     Y L++NV A    W  V ++R +M++    KVPG
Sbjct: 642 HIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPG 701

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF------GLMEENNVSGHCNVLDKEMD 657
            SWIE+    H FV++D SHP    +Y++L ++       G + +  +  H  +L K +D
Sbjct: 702 YSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQLYLPMHPQLLSKSID 761



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 215/416 (51%), Gaps = 2/416 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ GK +H  +  +GL   + + + ++ +Y +     D + LFD +  ++ V WN +++G
Sbjct: 74  VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNG 133

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G  GN    F  M    ++ + +TF  +L  C     +++G +LH   +  G  L+
Sbjct: 134 YVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELD 193

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V++ L+ +Y KC  ++ AR++FD     DLV WN ++S Y  N L   A  +F  M  
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMIS 253

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+K D  TF+S +     L S K  ++IHG +I+ +  LDV + ++L+D+Y K  +++ 
Sbjct: 254 AGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEM 313

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++    ++ + V   TM+ G+  NG  +EA++  R ++Q    P  VT +SI  +   
Sbjct: 314 AQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAG 373

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+     +++H   IK  +     + +A+++ Y+KCG +  A + F  + E D + W S+
Sbjct: 374 LAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSM 433

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           I + + +G   E+I +F +M     R D ++    LSAC++   +  G     LMI
Sbjct: 434 ITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 192/370 (51%), Gaps = 2/370 (0%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHIT 164
           +YV+  +  D + LF  +++     WN +I G    G       ++ +ML   V  D  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  +++AC     +++G+ +H  +  +G   + FV S+L+ LY + G + DA+ +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +D VLWNVM++ Y  N     AI +F  MR   +K +  TF+ +++ C +     LG Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +HG+ +    +LD  VA +L+ MY+K   +  A ++FD     ++VSWN ++ G+ QNG 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA  L R M+     PD +T AS L     L      +++H Y I++ V   + +++A
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y KC  +  A +        D V  T++I  Y  +G +KE++E F  ++   ++P 
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 465 SIAFLEVLSA 474
           S+ F  +  A
Sbjct: 361 SVTFSSIFPA 370



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%)

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY + G++ DA  +F  +      +WN M+ GF   G    A+     ML     PD+ T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
              ++ +C  L      + VH      G++  + + ++LI  Y++ G ++ A   F ++ 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           + D V W  ++  Y  +G S  +I++F +M    ++P+S+ F  VLS C+   ++  G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 487 YFNLMIS 493
              + +S
Sbjct: 181 LHGIAVS 187


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 344/580 (59%), Gaps = 4/580 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S ALK  +    L+ GK +H  + K  + N + + + ++ +Y KC   +D  K+F E   
Sbjct: 109 SIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPK 168

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +++V W ++I+G    G       +F RM+ L+ V  D +T  S   AC Q  D  +GR 
Sbjct: 169 QDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRS 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H F+ + GF     +++++++LYGK G +  A  +F E+  +D++ W+ MV+CYA N  
Sbjct: 229 VHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGA 288

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +FN M  + ++ +  T  S + +C +  + + G+ IH L +   F+LD+ V+T+
Sbjct: 289 ETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTA 348

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY K  +  +A  +F+ M  K+VVSW  +  G+ + G   +++ +  +ML     PD
Sbjct: 349 LMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPD 408

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + L  IL++   L I  +   +HA+  K+G      I  +LI  Y+KC SI  A + F 
Sbjct: 409 AIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFK 468

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVS 482
            ++  D+VTW+SII AY FHG  +E++++F +M +H+ V+P+ + F+ +LSACSH GL+ 
Sbjct: 469 GMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIE 528

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG++ F++M+++Y ++P++EHY  + DLLGR+G L +A D++  MP++      GA +GA
Sbjct: 529 EGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGA 588

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H +I + + AA  L  L+P+    Y L+SN+Y  ++ W D A+LR ++++N   K+ 
Sbjct: 589 CRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIV 648

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           G S +EI  E+H+F++SDR H ++  +Y ML  +   M+E
Sbjct: 649 GQSMVEIKNEVHSFIASDRFHGESDQIYGMLRKLDARMKE 688



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/408 (32%), Positives = 221/408 (54%), Gaps = 6/408 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           QLHS  +K+GL +   +  ++  +Y +  +     KLF+E   + +  WN L+      G
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 144 GNVT--PYFRRMLLDNV---RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             V     F +M  D +   R D+ T +  L++C     +E+G+ +H F+ K     + F
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMF 141

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLE 257
           V SAL++LY KCG + DA +VF E   +D+VLW  +++ Y  N   + A+A F+ M  LE
Sbjct: 142 VGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 201

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  D  T  S  ++C  L    LGR +HG V ++ FD  + +A S++++Y K G+I  A
Sbjct: 202 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSA 261

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +F  M  K+++SW++MV  +  NG    A+ L  +M+      + VT+ S L +C S 
Sbjct: 262 ANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASS 321

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S   E + +H  A+  G +  +++  AL++ Y KC S   A+  F  + + D+V+W  + 
Sbjct: 322 SNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLF 381

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
             YA  G++ +S+ VF  MLS+  RPD+IA +++L+A S  G+V + L
Sbjct: 382 SGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQAL 429



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 193/391 (49%), Gaps = 11/391 (2%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL  C     I    +LHS  LKVG   + FV + L  LY +   +  A ++F+E  C+ 
Sbjct: 10  LLETCCSKISIP---QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKT 66

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM---KGDYFTFSSLVNSCGTLGSSKLGRQ 284
           + LWN ++  Y L       +++F+ M  + +   + D +T S  + SC  L   +LG+ 
Sbjct: 67  VYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKM 126

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHG + K+  D D+ V ++L+++Y+K G ++DA +VF     ++VV W +++ G+ QNG 
Sbjct: 127 IHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGS 186

Query: 345 GREAVKLL-RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              A+    R ++     PD VTL S  S+C  LS     R VH +  + G    L + N
Sbjct: 187 PELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLAN 246

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +++N Y K GSI  A   F  +   D+++W+S++  YA +G    ++ +F +M+   +  
Sbjct: 247 SILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIEL 306

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           + +  +  L AC+    + EG ++ + +  +Y    D    T L D+  +      A DL
Sbjct: 307 NRVTVISALRACASSSNLEEG-KHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDL 365

Query: 524 LASMPIEPRSDTLGAFIGACKV---HGSIGL 551
              MP +        F G  ++   H S+G+
Sbjct: 366 FNRMPKKDVVSWAVLFSGYAEIGMAHKSLGV 396


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 329/581 (56%), Gaps = 7/581 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA-FDDMEKLF 121
            S+++ +L +       +   Q+ SH +  G+     + +++L+  +     F     LF
Sbjct: 25  QSYHNFSLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLF 84

Query: 122 DEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
            ++   N+ +WN +                +  ML +    D+ +F  +L+AC +   + 
Sbjct: 85  FQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLH 144

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD--EVLCRDLVLWNVMVSC 237
            GR +HS  LK+G  L+ FV +AL+  +  CG VE AR VFD    L RD+V WN M+S 
Sbjct: 145 KGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISG 204

Query: 238 YALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           Y  +   + A+ VF  +  +G +  D  T  S ++ CG LG   LG++IHGL     F L
Sbjct: 205 YLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVL 264

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V +SL+DMY+K G I+DA +VFD +  +N V W +M+ G+ Q+   +EA++L R+M 
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 324

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            G F  D  T+A +LS+CG      + R +H Y  +N ++  L+  NALI  YSKCG I 
Sbjct: 325 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQ 384

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSIAFLEVLSAC 475
            AL+ F  + +PD+ +W+++I   A +G S +++ +F +M +   +RP+ I FL VL AC
Sbjct: 385 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 444

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           +HGG V +GL YFN M   Y++ P  EHY C+ DLLGR  LLVEA   + ++PI+P    
Sbjct: 445 NHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVI 504

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             + + AC+ HG+I LA++AA+++ ELEP +     L+SNVYAS   W DV R+RK M  
Sbjct: 505 WRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMAT 564

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
               K PGCS++EI G +H    +DRSHP+   +Y  + ++
Sbjct: 565 QRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISI 605


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 325/565 (57%), Gaps = 2/565 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+++H  +M+ GL N  ++ N ++ +Y KC +  D  ++FD M  R+ V+W TL   
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        +  ML + VR   IT+ ++L AC     +E G+++H+ I++  +  +
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             VS+AL  +Y KCG  +DAR VF+ +  RD++ WN M+  +  +   + A   F+ M  
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+  D  T+++++++C   G    G++IH    K     DV    +L++MY+K G++ D
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKD 384

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  ++VVSW T++  +       E+    + MLQ     +++T   +L +C +
Sbjct: 385 ARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSN 444

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  +++HA  +K G+ A L++ NAL++ Y KCGS+  A++ F  +   D+VTW ++
Sbjct: 445 PVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTL 504

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG    +G   E+++ +E M S  +RP++  F+ VLSAC    LV EG R F  M  DY 
Sbjct: 505 IGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYG 564

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  +HY C+ D+L R G L EA D++ ++P++P +   GA + AC++H ++ + + AA
Sbjct: 565 IVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAA 624

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E  L+LEP     Y  +S +YA+   W DVA+LRK M++    K PG SWIEIAGE+H+F
Sbjct: 625 EHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSF 684

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLME 641
           V+ D+SHP+   +YA L T+   M+
Sbjct: 685 VARDQSHPRTQEIYAELETLKKQMK 709



 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 158/515 (30%), Positives = 267/515 (51%), Gaps = 35/515 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y + L+   K   L  GKQ+H HI++ G+   + + N +L +Y  C + ++  +LFD+  
Sbjct: 31  YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++V+WN +ISG  + G     +  F  M  + +  D  TF S+L AC     +  GR 
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  +++ G   +  V +AL+ +Y KCG V DARRVFD +  RD V W  +   YA +  
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+ ++  ++ M  E ++    T+ +++++CG+L + + G+QIH  +++  +  DV V+T+
Sbjct: 211 GEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTA 270

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L  MY K G   DA  VF+ ++ ++V++WNTM+ GF  +G   EA      ML+    PD
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD 330

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  ++LS+C         +++HA A K+G+ + +   NALIN YSK GS+  A Q F 
Sbjct: 331 RATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 390

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------- 476
            + + D+V+WT+++G YA      ES   F++ML   V+ + I ++ VL ACS       
Sbjct: 391 RMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKW 450

Query: 477 ----HGGLVSEGL------------RYFN-------LMISDYHILPDSEHYTCLTDLLGR 513
               H  +V  GL             YF        + + +   + D   +  L   LG+
Sbjct: 451 GKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQ 510

Query: 514 VGLLVEA---YDLLASMPIEPRSDTLGAFIGACKV 545
            G  +EA   Y+++ S  + P + T    + AC+V
Sbjct: 511 NGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRV 545



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 205/370 (55%), Gaps = 1/370 (0%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           ++D   +  LL++CV+A D+ VG+++H  IL+ G   N ++++ L+ LY  CG V +AR+
Sbjct: 25  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQ 84

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +FD+   + +V WNVM+S YA   L   A  +F LM+ E ++ D FTF S++++C +   
Sbjct: 85  LFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAV 144

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR+IH  V++     D  V  +L+ MYAK G++ DA RVFD M +++ VSW T+   
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           + ++G G E++K    MLQ    P  +T  ++LS+CGSL+   + +Q+HA+ +++   + 
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + +  AL   Y KCG+   A + F  +   D++ W ++I  +   G  +E+   F +ML 
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             V PD   +  VLSAC+  G ++ G         D  ++ D      L ++  + G + 
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMK 383

Query: 519 EAYDLLASMP 528
           +A  +   MP
Sbjct: 384 DARQVFDRMP 393



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 225/449 (50%), Gaps = 10/449 (2%)

Query: 32  TTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           TT+T A         S       + E    +   Y   L        L++GKQ+H+HI++
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPY 149
               + + +   +  +Y+KC AF D  ++F+ +  R+++ WNT+I G ++ G        
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F RML + V  D  T+ ++L AC +   +  G+ +H+   K G   +    +AL+++Y K
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSK 378

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
            G ++DAR+VFD +  RD+V W  ++  YA       +   F  M  +G+K +  T+  +
Sbjct: 379 AGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCV 438

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + +C    + K G++IH  V+K     D+ V  +L+ MY K G+++DA RVF+GM+ ++V
Sbjct: 439 LKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDV 498

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+WNT++ G GQNG G EA++    M      P+  T  ++LS+C   ++  E R+  A+
Sbjct: 499 VTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAF 558

Query: 390 AIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSK 447
             K+ G+         +++  ++ G +  A     ++  +P    W +++ A   H    
Sbjct: 559 MSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHC--- 615

Query: 448 ESIEVFEKMLSHAVR--PDSIAFLEVLSA 474
            ++E+ E+   H ++  P +      LSA
Sbjct: 616 -NVEIGERAAEHCLKLEPQNAGLYVSLSA 643



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 153/276 (55%), Gaps = 3/276 (1%)

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           V   +  +G + D + +  L+ SC       +G+Q+H  +++     +V +  +L+ +YA
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
             G++++A ++FD  + K+VVSWN M+ G+   G  +EA  L   M Q    PD+ T  S
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVS 134

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           ILS+C S ++    R++H   ++ G+    ++ NALI+ Y+KCGS+  A + F ++   D
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRD 194

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YF 488
            V+WT++ GAYA  G  +ES++ +  ML   VRP  I ++ VLSAC     + +G + + 
Sbjct: 195 EVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHA 254

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           +++ S+YH   D    T LT +  + G   +A ++ 
Sbjct: 255 HIVESEYH--SDVRVSTALTKMYMKCGAFKDAREVF 288


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/650 (33%), Positives = 350/650 (53%), Gaps = 71/650 (10%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +S+ L   A+    +   ++H+ I+K    ++  +QN+++ VY KC   D   KLFD 
Sbjct: 20  SPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDR 79

Query: 124 MRVRNIVTWNTLI-----SGIIN--------------CGGN--------------VTPYF 150
           M  RNI +WN++I     SG ++              C  N                 YF
Sbjct: 80  MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
            +M      ++  +F S L AC    D+++G ++HS + +  +  + ++ SALVD+Y KC
Sbjct: 140 AQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKC 199

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G VE A+ VFDE+  R  V WN +++CY  N   D A+ +F  M   G++ D  T +S+V
Sbjct: 200 GRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVV 259

Query: 271 NSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFD------- 322
           ++C T+ + K G+QIH  V+K   F  D+++  +L+DMYAK   I++A  +FD       
Sbjct: 260 SACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSV 319

Query: 323 ------------------------GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
                                    M  K+V++WN ++ G  QNG+  EA+ L R + + 
Sbjct: 320 VSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRE 379

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ------AFLSIENALINAYSKC 412
           S  P   T  ++L++C +L+     RQ H++ +K+G +      + + + N+LI+ Y KC
Sbjct: 380 SVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKC 439

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GS+    + F  + E D V+W ++I  YA +G   +++EVF KML     PD +  + VL
Sbjct: 440 GSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVL 499

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
            ACSH GL+ EG  YF  M + + ++P  +HYTC+ DLLGR G L EA +L+  M ++P 
Sbjct: 500 CACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPD 559

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +   G+ + ACKVH +I L ++  +KLLE++P     Y L+SN+YA  R W +V R+RK+
Sbjct: 560 AIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKL 619

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           MR     K PGCSWIEI GE++ F+  D+ H +   +Y +L T+   M++
Sbjct: 620 MRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQ 669



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 198/378 (52%), Gaps = 39/378 (10%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD   F+ LL  C ++       R+H+ I+K  F    F+ + L+D+YGKCG V+ AR++
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN--------------------------L 253
           FD +L R++  WN ++  +  +   D A+ +F                           L
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 254 MRLEGMKG-----DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           +    M G     + ++F S +++C  L   KLG QIH LV + ++  DV + ++LVDMY
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMY 196

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           +K G ++ A  VFD MT ++ VSWN+++  + QNG   EA+K+  +M++    PDEVTLA
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256

Query: 369 SILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           S++S+C ++S   E +Q+HA  +K +  +  L + NAL++ Y+KC  I  A   F  +  
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             +V+ TS++  YA        ++V   M S+ +  D I +  +++ C+  G   E L  
Sbjct: 317 RSVVSETSMVSGYA----KASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALIL 372

Query: 488 FNLMISDYHILPDSEHYT 505
           F L+  +  + P   HYT
Sbjct: 373 FRLLKRE-SVWP--THYT 387


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 333/571 (58%), Gaps = 8/571 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  +   A  G +  G Q+H+ ++KLG   +  + N ++ +  K     D   +FD M  
Sbjct: 207 STVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMEN 266

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+WN++I+G +  G ++  +  F  M L   +  H TF S++++C    ++ + R L
Sbjct: 267 KDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVL 326

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCL 243
           H   LK G   N  V +AL+    KC  ++DA  +F  +   + +V W  M+S Y  N  
Sbjct: 327 HCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGD 386

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D A+ +F+LMR EG+K ++FT+S+++    T+  +    +IH  VIK +++    V T+
Sbjct: 387 TDQAVNLFSLMRREGVKPNHFTYSTIL----TVQHAVFISEIHAEVIKTNYEKSSSVGTA 442

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D + K GNI DA +VF+ +  K+V++W+ M+ G+ Q G+  EA K+   + +    P+
Sbjct: 443 LLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPN 502

Query: 364 EVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           E T  SI+++C + + S E  +Q HAYAIK  +   L + ++L+  Y+K G+I  A + F
Sbjct: 503 EFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIF 562

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
              KE DLV+W S+I  YA HG +K+++EVFE+M    +  D+I F+ V+SAC+H GLV 
Sbjct: 563 KRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVG 622

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +G  YFN+MI+D+HI P  EHY+C+ DL  R G+L +A D++  MP  P +      + A
Sbjct: 623 KGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAA 682

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
            +VH +I L K AAEK++ LEP     Y L+SN+YA+   W +   +RK+M      K P
Sbjct: 683 SRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEP 742

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G SWIE+  + ++F++ D SHP + H+Y+ L
Sbjct: 743 GYSWIEVKNKTYSFLAGDLSHPLSDHIYSKL 773



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 220/398 (55%), Gaps = 7/398 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           G+Q+H   +K GL + LS+ N ++ +Y K     D  ++FDEM  R++V+WN+L++G   
Sbjct: 121 GEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                 V   F  M ++  R D+ T ++++ A      + +G ++H+ ++K+GF     V
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLV 240

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+ +  K G + DAR VFD +  +D V WN M++ + +N     A   FN M+L G 
Sbjct: 241 CNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA 300

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K  + TF+S++ SC +L    L R +H   +K     +  V T+L+    K   IDDA  
Sbjct: 301 KPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFS 360

Query: 320 VFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +F  M   ++VVSW  M+ G+ QNGD  +AV L   M +    P+  T ++IL+   ++ 
Sbjct: 361 LFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVF 420

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           IS    ++HA  IK   +   S+  AL++A+ K G+I+ A++ F  ++  D++ W++++ 
Sbjct: 421 IS----EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLA 476

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            YA  G ++E+ ++F ++    ++P+   F  +++AC+
Sbjct: 477 GYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACT 514



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 232/469 (49%), Gaps = 22/469 (4%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD----MEKLFDEMRVRNIVTWNTLISGI 139
           QLH H   L       LQ+ V+ +  +    D      ++LFD+  +R++   N L+   
Sbjct: 25  QLHCHANPL-------LQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRY 77

Query: 140 INCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
             C         F  +    +  D  T + +L  C  + +  VG ++H   +K G   + 
Sbjct: 78  SRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHL 137

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            V ++LVD+Y K G V D RRVFDE+  RD+V WN +++ Y+ N   D    +F LM++E
Sbjct: 138 SVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVE 197

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G + DY+T S+++ +    G+  +G QIH LV+K  F+ + LV  SL+ M +K+G + DA
Sbjct: 198 GYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDA 257

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             VFD M  K+ VSWN+M+ G   NG   EA +   +M      P   T AS++ SC SL
Sbjct: 258 RVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASL 317

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSI 436
                 R +H   +K+G+    ++  AL+ A +KC  I  A   F  +     +V+WT++
Sbjct: 318 KELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAM 377

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  Y  +G + +++ +F  M    V+P+   +  +L+   H   +SE   +  ++ ++Y 
Sbjct: 378 ISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISE--IHAEVIKTNYE 434

Query: 497 ILPDSEHYTCLTDLLGRVGLL---VEAYDLLASMPIEPRSDTLGAFIGA 542
               S   T L D   ++G +   V+ ++L+ +  +   S  L  +  A
Sbjct: 435 --KSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQA 481



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 196/387 (50%), Gaps = 10/387 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H+ ++  +K  A    L   + LH   +K GL    ++   ++    KCK  DD   LF 
Sbjct: 304 HATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFS 363

Query: 123 EMR-VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
            M  V+++V+W  +ISG +  G        F  M  + V+ +H T++++L         E
Sbjct: 364 LMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISE 423

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +    H+ ++K  +  +  V +AL+D + K G + DA +VF+ +  +D++ W+ M++ YA
Sbjct: 424 I----HAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYA 479

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDV 298
                + A  +F+ +  EG+K + FTF S++N+C     S + G+Q H   IK   +  +
Sbjct: 480 QAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNAL 539

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V++SLV +YAK GNI+ A  +F     +++VSWN+M+ G+ Q+G  ++A+++  +M + 
Sbjct: 540 CVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKR 599

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAG 417
           +   D +T   ++S+C    +  + +      I +  +   +   + +I+ YS+ G +  
Sbjct: 600 NLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGK 659

Query: 418 ALQCFGSVKEPDLVT-WTSIIGAYAFH 443
           A+     +  P   T W  ++ A   H
Sbjct: 660 AMDIINGMPFPPAATVWRIVLAASRVH 686


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/597 (34%), Positives = 326/597 (54%), Gaps = 33/597 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    K   L +G Q+H  I+K+G    + ++N ++H Y +C   D M ++FD+M  RN+
Sbjct: 146 LSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNV 205

Query: 130 VTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W +LI G     C       F  M+   +R + +T   ++ AC +  D+++G ++ + 
Sbjct: 206 VSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTC 265

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I ++   +N  + +ALVD+Y KCG ++ AR++FDE + ++LVL+N ++S Y    L    
Sbjct: 266 IGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREV 325

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +AV   M   G + D  T  S V++C  L     G+  HG V++   +    V  ++++M
Sbjct: 326 LAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINM 385

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG---------------------- 345
           Y K G  + ACRVFD M  K  VSWN+++ GF +NGD                       
Sbjct: 386 YMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI 445

Query: 346 ---------REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
                    +EA++L R M       D+VT+  + S+CG L      + +H Y  K  + 
Sbjct: 446 GALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIH 505

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             + +  AL++ +++CG    A+Q F  + + D+  WT+ IGA A  G    +IE+F++M
Sbjct: 506 FDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEM 565

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
           L   ++PD + F+ +L+A SHGGLV +G   F  M   Y I P + HY C+ DLLGR GL
Sbjct: 566 LQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGL 625

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           L EA  L+ SM +EP     G+ + AC+VH ++ +A +AAE++ EL+P +   + L+SN+
Sbjct: 626 LSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNI 685

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           YAS   W DVA++R  +++   HK+PG S IEI G+I  F + D SHP+  H+  ML
Sbjct: 686 YASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPML 742



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 268/537 (49%), Gaps = 49/537 (9%)

Query: 83  KQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDME------KLF--DEMRVRNIVTWN 133
           KQLHS I K GL +  LSL N ++    +   F+ +E      +LF  D   +     ++
Sbjct: 50  KQLHSQITKNGLNHHPLSLTN-LISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFS 108

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           +LI G   CG        FR+++      D+ TF  +L AC ++  +  G ++H  I+K+
Sbjct: 109 SLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKM 168

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           GF  + FV ++L+  YG+CG ++  RRVFD++  R++V W  ++  YA       A+++F
Sbjct: 169 GFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G++ +  T   ++++C  L   +LG Q+   + +   +++ L+  +LVDMY K 
Sbjct: 229 FEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKC 288

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G ID A ++FD    KN+V +NT++  + + G  RE + +L +ML+    PD +T+ S +
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348

Query: 372 SSCGSLS-ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS---------------- 414
           S+C  L  +SC  +  H Y ++NG++ + ++ NA+IN Y KCG                 
Sbjct: 349 SACSELDDVSC-GKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407

Query: 415 ------IAG---------ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
                 IAG         A + F ++ + DLV+W ++IGA     + KE+IE+F  M S 
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSE 467

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            +  D +  + V SAC + G +    ++ +  I    I  D    T L D+  R G    
Sbjct: 468 GITADKVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQS 526

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVS 574
           A  +   M ++       A IGA  + G+   A    +++L+  ++P   V  AL++
Sbjct: 527 AMQVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLT 582


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/592 (34%), Positives = 336/592 (56%), Gaps = 8/592 (1%)

Query: 79  LQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
            +QG+QLH+H++    L N   L  ++   Y  C      E +FD + ++N   WN +I 
Sbjct: 75  FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134

Query: 138 GIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G  + G  +     +R ML    R D+ T+  +L+AC     +E+GRR+HS ++  G   
Sbjct: 135 GYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLES 194

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + +V ++L+ +Y K G +  AR VFD +  RDL  WN M+S YA N     A  VF+LM 
Sbjct: 195 DIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMG 254

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNI 314
             G+  D  T   L+++C  L + K G+ IHG  ++ S  + +     SL++MY     +
Sbjct: 255 KAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCM 314

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DA R+F+ +  K+ VSWN+M++G+ +NGD  E+++L R M      PD+VT  ++L +C
Sbjct: 315 VDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC 374

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             ++       +H+Y +K G  A   +  AL++ YSKCGS+A + + F  + +  LV+W+
Sbjct: 375 DQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWS 434

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +++  Y  HG  +E+I + + M +++V PD+  F  +LSACSH GLV EG   F  M  +
Sbjct: 435 AMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKE 494

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y++ P   HY+C+ DLLGR G L EAY ++ +M I+P SD   A + A ++H +I LA+ 
Sbjct: 495 YNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEI 554

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           +A+K+ ++ P    +Y  +SN+YA+E+ W DV R+R M+R     K PGCS+IE+   +H
Sbjct: 555 SAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVH 614

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV----LDKEMDECTLW 662
            F+  D+SH Q   +YA L  +   ++E       ++    +++E+ E  LW
Sbjct: 615 RFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLW 666



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 200/383 (52%), Gaps = 5/383 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK       ++ G+++HS ++  GL + + + N +L +Y K         +FD M 
Sbjct: 164 YPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMA 223

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRR 183
            R++ +WNT+ISG      + T +    L+    L  D  T   LL AC     ++ G+ 
Sbjct: 224 ERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKV 283

Query: 184 LHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +H + ++   G  N F +++L+++Y  C  + DARR+F+ V  +D V WN M+  YA N 
Sbjct: 284 IHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNG 343

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               ++ +F  M L+G   D  TF +++ +C  + + + G  IH  ++K+ FD + +V T
Sbjct: 344 DAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGT 403

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVDMY+K G++  + RVFD M  K++VSW+ MV G+G +G GREA+ +L  M   S  P
Sbjct: 404 ALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIP 463

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQC 421
           D     SILS+C    +  E +++     K   V+  LS  + +++   + G +  A   
Sbjct: 464 DNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVI 523

Query: 422 FGSVK-EPDLVTWTSIIGAYAFH 443
             +++ +P    W +++ A   H
Sbjct: 524 IRTMEIKPTSDIWAALLTASRLH 546


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 326/567 (57%), Gaps = 2/567 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L +S     ++ G+QLH  +++ GL     + N ++ VY K +   D  KLFD M 
Sbjct: 114 FACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP 173

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V WN +I G +  G   + +  F  M+   ++ D ITF S L +  ++  ++  + 
Sbjct: 174 QIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKE 233

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +I++ G  L+ +++SAL+DLY KC     A ++F+     D+V++  M+S Y LN +
Sbjct: 234 IHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGM 293

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  +  + M  +  TFSS++ +C  L + KLGR++HG +IK   +    V ++
Sbjct: 294 NKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSA 353

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +++MYAK G +D A  +F  ++ K+ + WN+++  F Q+G   EA+ L R M       D
Sbjct: 354 IMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYD 413

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VT+++ LS+C ++      +++H + IK   ++ L   +ALIN Y+KCG +  A   F 
Sbjct: 414 CVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFN 473

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++E + V W SII AY +HG   +S+ +F  ML   ++PD I FL +LS+C H G V +
Sbjct: 474 LMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVED 533

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+RYF  M  +Y I    EHY C+ DL GR G L EA++++ SMP  P +   G  +GAC
Sbjct: 534 GVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGAC 593

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           +VHG++ LA+ A+  LL+LEP     Y L+++V A    W  V +++ +M++    KVPG
Sbjct: 594 RVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPG 653

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           CSWIE+      F ++D SHP++  +Y
Sbjct: 654 CSWIEVNNTTCVFFAADGSHPESPQIY 680



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 224/429 (52%), Gaps = 2/429 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +K       ++ GK +   I+++G    + + + ++ +Y      +D  + FD+M 
Sbjct: 13  FPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMI 72

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V WN +I+G + CG   +    F+ M+    + D +TF  +L        +E GR+
Sbjct: 73  DKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQ 132

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  +++ G      V + LV +Y K   + DAR++FD +   DLV+WN M+  Y  N  
Sbjct: 133 LHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGF 192

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D A  +FN M   G+K D  TF+S + S     S K  ++IHG +++    LDV + ++
Sbjct: 193 MDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSA 252

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K  +   AC++F+  T  ++V +  M+ G+  NG  ++A+++ R +LQ    P+
Sbjct: 253 LIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPN 312

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +T +SIL +C  L+     R++H Y IKN ++    + +A++N Y+KCG +  A   FG
Sbjct: 313 ALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFG 372

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D + W SII +++  G  +E+I +F +M    V+ D +     LSAC++   +  
Sbjct: 373 RISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHY 432

Query: 484 GLRYFNLMI 492
           G      MI
Sbjct: 433 GKEIHGFMI 441



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 185/324 (57%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML   V  D  TF  +++ C   +++ +G+ +   IL++GF L+ FV+S+L+ LY   G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +EDARR FD+++ +D VLWNVM++ Y      D AI +F  M     K D  TF+ +++ 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
             +    + GRQ+HGLV++   D   LV  +LV +Y+K   + DA ++FD M   ++V W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N M+ G+ QNG   +A  L  +M+     PD +T  S L S    S   + +++H Y ++
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR 240

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           +GV   + + +ALI+ Y KC     A + F    + D+V +T++I  Y  +G++K+++E+
Sbjct: 241 HGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 453 FEKMLSHAVRPDSIAFLEVLSACS 476
           F  +L   + P+++ F  +L AC+
Sbjct: 301 FRWLLQKKMIPNALTFSSILPACA 324



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 173/356 (48%), Gaps = 36/356 (10%)

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D +TF  ++  C  L + +LG+ I  ++++  FDLD+ VA+SL+ +YA NG I+DA
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            R FD M  K+ V WN M+ G+ Q G+   A+KL +DM+     PD VT A +LS   S 
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           ++    RQ+H   +++G+     + N L+  YSK   +  A + F  + + DLV W  +I
Sbjct: 125 AMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMI 184

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGL- 485
           G Y  +G   ++  +F +M+S  ++PDSI F   L + +           HG +V  G+ 
Sbjct: 185 GGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVI 244

Query: 486 --RYFNLMISDYHILPDSEHYTC-LTDLLGRVGLLV------------------EAYDLL 524
              Y N  + D +         C + +L  +  +++                  E +  L
Sbjct: 245 LDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWL 304

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL--ELEPSKPVNYALVSNVYA 578
               + P + T  + + AC    +I L +     ++  ELE   PV  A++ N+YA
Sbjct: 305 LQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIM-NMYA 359



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           ML     PD+ T   ++  C  L+     + +    ++ G    + + ++LI  Y+  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS- 473
           I  A + F  + + D V W  +I  Y   G S  +I++F+ M+S   +PDS+ F  VLS 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 474 ACS----------HGGLVSEGLRYFNLM 491
           +CS          HG +V  GL +  L+
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLV 148


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 334/600 (55%), Gaps = 8/600 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L V A    L  G QLH   +  GL     + N +L +Y KC+      KLFD + 
Sbjct: 162 FACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP 221

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+WN +ISG +  G  G     FR M+   ++ D ITF S L    +   ++  + 
Sbjct: 222 QSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKE 281

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +I++    L+ F+ SAL+D+Y KC  VE A++   +    D V+   M+S Y LN  
Sbjct: 282 IHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGK 341

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+  F  +  E MK    TFSS+  +   L +  LG+++HG +IK   D    V ++
Sbjct: 342 NKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSA 401

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMYAK G +D ACRVF+ +T K+ + WN+M+    QNG   EA+ L R M       D
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYD 461

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V+++  LS+C +L      +++H   IK  +++ L  E++LI+ Y+KCG++  + + F 
Sbjct: 462 CVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFD 521

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++E + V+W SII AY  HG  KE + +F +ML + ++PD + FL ++SAC H G V E
Sbjct: 522 RMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDE 581

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+RY++LM  +Y I    EHY C+ D+ GR G L EA++ + SMP  P +   G  +GAC
Sbjct: 582 GIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGAC 641

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            +HG++ LA+ A++ L +L+P     Y L++NV A    W  V ++R +M++    KVPG
Sbjct: 642 HIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPG 701

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF------GLMEENNVSGHCNVLDKEMD 657
            SWIE+    H FV++D SHP    +Y++L ++       G + +  +  H  +L K +D
Sbjct: 702 YSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQLYLPMHPQLLSKSID 761



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 193/370 (52%), Gaps = 2/370 (0%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHIT 164
           +YV+  +  D + LF  +++     WN +I G    G       ++ +ML   V  D  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  +++AC     +++G+ +H  +  +G   + FV S+L+ LY + G + DA+ +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +D VLWNVM++ Y  N     AI +F  MR   +K +  TF+ +++ C +     LG Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +HG+ +    +LD  VA +L+ MY+K   +  A ++FD +   ++VSWN ++ G+ QNG 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA  L R M+     PD +T AS L     L      +++H Y I++ V   + +++A
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y KC  +  A +        D V  T++I  Y  +G +KE++E F  ++   ++P 
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 465 SIAFLEVLSA 474
           S+ F  +  A
Sbjct: 361 SVTFSSIFPA 370



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 215/416 (51%), Gaps = 2/416 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ GK +H  +  +GL   + + + ++ +Y +     D + LFD +  ++ V WN +++G
Sbjct: 74  VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNG 133

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G  GN    F  M    ++ + +TF  +L  C     +++G +LH   +  G  L+
Sbjct: 134 YVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELD 193

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V++ L+ +Y KC  ++ AR++FD +   DLV WN ++S Y  N L   A  +F  M  
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMIS 253

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+K D  TF+S +     L S K  ++IHG +I+ +  LDV + ++L+D+Y K  +++ 
Sbjct: 254 AGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEM 313

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +     ++ + V   TM+ G+  NG  +EA++  R ++Q    P  VT +SI  +   
Sbjct: 314 AQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAG 373

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+     +++H   IK  +     + +A+++ Y+KCG +  A + F  + E D + W S+
Sbjct: 374 LAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSM 433

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           I + + +G   E+I +F +M     R D ++    LSAC++   +  G     LMI
Sbjct: 434 ITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 89/186 (47%)

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY + G++ DA  +F  +      +WN M+ GF   G    A+     ML     PD+ T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
              ++ +C  L      + VH      G++  + + ++LI  Y++ G ++ A   F ++ 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           + D V W  ++  Y  +G S  +I++F +M    ++P+S+ F  VLS C+   ++  G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 487 YFNLMI 492
              + +
Sbjct: 181 LHGIAV 186


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 318/548 (58%), Gaps = 2/548 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G  +H  I K+G+   + + N +L +Y K +   +  ++F +M V++ VTWNT+I G
Sbjct: 238 VKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICG 297

Query: 139 IINCGGNVTPYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
               G +       M ++D    D ++  S +RAC Q+ D++VG+ +H +++  GF  + 
Sbjct: 298 YAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDT 357

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
              + L+D+Y KCG +  A+ VFD   C+D V WN +++ Y  +      +  F +M++E
Sbjct: 358 VACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME 417

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
             K D  TF  L++    L     GR IH  VIK  F+ ++++  SL+D+YAK G +DD 
Sbjct: 418 -RKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +VF  M+A +++SWNT++       D     +++ +M      PDE T+  IL  C  L
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           ++  + +++H Y  K+G ++ + I NALI  YSKCGS+   ++ F  +KE D+VTWT++I
Sbjct: 537 AVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALI 596

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            A+  +G  K++++ F+ M    V PDS+AF+  + ACSH G+V EGLR+F+ M +DY++
Sbjct: 597 SAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNL 656

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLL R GLL +A + + SMP++P +   GA + AC+  G+  +A+  ++
Sbjct: 657 EPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSK 716

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           K+LEL       Y LVSN+YA+   W  V  +R  M+     K PG SWIEI   ++ F 
Sbjct: 717 KILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFR 776

Query: 618 SSDRSHPQ 625
           + D+S  Q
Sbjct: 777 TGDKSFEQ 784



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 220/407 (54%), Gaps = 5/407 (1%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRNIVTWNTLISGI 139
           Q + +HS I+  GL   +    +++  Y + K       +F  +    N+  WN++I  +
Sbjct: 37  QLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRAL 96

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G       Y+  M    ++ D  TF S++ +C +  D+E+G  +H   +++GF  + 
Sbjct: 97  THNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDL 156

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           ++ +AL+D+Y +   +++AR VF+E+  RD V WN ++S Y  N   + A+ +++  R+ 
Sbjct: 157 YIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           GM  D FT SS++ +CG+L + K G  +HG++ K     DV++   L+ MY K   + +A
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            RVF  M  K+ V+WNTM+ G+ Q G    +VKL  DM+ G F PD +++ S + +CG  
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDG-FVPDMLSITSTIRACGQS 335

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 + VH Y I +G +      N LI+ Y+KCG +  A + F + K  D VTW S+I
Sbjct: 336 GDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLI 395

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             Y   G  KE +E F KM+    +PDS+ F+ +LS  S    +++G
Sbjct: 396 NGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQG 441



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + ++   + QG+ +H  ++K G   +L + N +L VY KC   DD+ K+F  M   +I
Sbjct: 429 LSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDI 488

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WNT+I+  ++       +     M  + +  D  T   +L  C        G+ +H +
Sbjct: 489 ISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGY 548

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I K GF  N  + +AL+++Y KCG +E+  +VF  +  +D+V W  ++S + +   G  A
Sbjct: 549 IFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKA 608

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLV 305
           +  F  M L G+  D   F + + +C   G  K G +     +K  ++L+  +     +V
Sbjct: 609 LKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDR-MKTDYNLEPRMEHYACVV 667

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVS-WNTMVVGFGQNGDGREAVKLLRDMLQ 357
           D+ A++G +  A      M  K   S W  ++      G+   A ++ + +L+
Sbjct: 668 DLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 720



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           F  SSL+ +  +  ++   R +H L+I     L V+ +  L+  YA+  +   +  VF  
Sbjct: 20  FLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRS 79

Query: 324 MT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG---SLSI 379
           ++   NV  WN+++     NG   +A+    +M +    PD  T  S+++SC     L +
Sbjct: 80  ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLEL 139

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
            C    VH +A++ G ++ L I NALI+ YS+   +  A   F  +   D V+W S+I  
Sbjct: 140 GC---IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           Y  +G  +++++++ K     + PD      VL AC     V EG+
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV 242


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 318/548 (58%), Gaps = 2/548 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G  +H  I K+G+   + + N +L +Y K +   +  ++F +M V++ VTWNT+I G
Sbjct: 238 VKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICG 297

Query: 139 IINCGGNVTPYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
               G +       M ++D    D ++  S +RAC Q+ D++VG+ +H +++  GF  + 
Sbjct: 298 YAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDT 357

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
              + L+D+Y KCG +  A+ VFD   C+D V WN +++ Y  +      +  F +M++E
Sbjct: 358 VACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME 417

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
             K D  TF  L++    L     GR IH  VIK  F+ ++++  SL+D+YAK G +DD 
Sbjct: 418 -RKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +VF  M+A +++SWNT++       D     +++ +M      PDE T+  IL  C  L
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           ++  + +++H Y  K+G ++ + I NALI  YSKCGS+   ++ F  +KE D+VTWT++I
Sbjct: 537 AVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALI 596

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            A+  +G  K++++ F+ M    V PDS+AF+  + ACSH G+V EGLR+F+ M +DY++
Sbjct: 597 SAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNL 656

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLL R GLL +A + + SMP++P +   GA + AC+  G+  +A+  ++
Sbjct: 657 EPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSK 716

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           K+LEL       Y LVSN+YA+   W  V  +R  M+     K PG SWIEI   ++ F 
Sbjct: 717 KILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFR 776

Query: 618 SSDRSHPQ 625
           + D+S  Q
Sbjct: 777 TGDKSFEQ 784



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 220/407 (54%), Gaps = 5/407 (1%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRNIVTWNTLISGI 139
           Q + +HS I+  GL   +    +++  Y + K       +F  +    N+  WN++I  +
Sbjct: 37  QLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRAL 96

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G       Y+  M    ++ D  TF S++ +C +  D+E+G  +H   +++GF  + 
Sbjct: 97  THNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDL 156

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           ++ +AL+D+Y +   +++AR VF+E+  RD V WN ++S Y  N   + A+ +++  R+ 
Sbjct: 157 YIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           GM  D FT SS++ +CG+L + K G  +HG++ K     DV++   L+ MY K   + +A
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            RVF  M  K+ V+WNTM+ G+ Q G    +VKL  DM+ G F PD +++ S + +CG  
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDG-FVPDMLSITSTIRACGQS 335

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 + VH Y I +G +      N LI+ Y+KCG +  A + F + K  D VTW S+I
Sbjct: 336 GDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLI 395

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             Y   G  KE +E F KM+    +PDS+ F+ +LS  S    +++G
Sbjct: 396 NGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQG 441



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + ++   + QG+ +H  ++K G   +L + N +L VY KC   DD+ K+F  M   +I
Sbjct: 429 LSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDI 488

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WNT+I+  ++       +     M  + +  D  T   +L  C        G+ +H +
Sbjct: 489 ISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGY 548

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I K GF  N  + +AL+++Y KCG +E+  +VF  +  +D+V W  ++S + +   G  A
Sbjct: 549 IFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKA 608

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLV 305
           +  F  M L G+  D   F + + +C   G  K G +     +K  ++L+  +     +V
Sbjct: 609 LKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDR-MKTDYNLEPRMEHYACVV 667

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVS-WNTMVVGFGQNGDGREAVKLLRDMLQ 357
           D+ A++G +  A      M  K   S W  ++      G+   A ++ + +L+
Sbjct: 668 DLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 720



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           F  SSL+ +  +  ++   R +H L+I     L V+ +  L+  YA+  +   +  VF  
Sbjct: 20  FLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRS 79

Query: 324 MT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG---SLSI 379
           ++   NV  WN+++     NG   +A+    +M +    PD  T  S+++SC     L +
Sbjct: 80  ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLEL 139

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
            C    VH +A++ G ++ L I NALI+ YS+   +  A   F  +   D V+W S+I  
Sbjct: 140 GC---IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           Y  +G  +++++++ K     + PD      VL AC     V EG+
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV 242


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 335/589 (56%), Gaps = 6/589 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ G+Q+H+ ++++G    +   N ++ +Y+K    D    +F++M   ++V+WN LISG
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +        +M    +  +  T +S+L+AC  A   ++GR++H F++K     +
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            ++   LVD+Y K  F++DAR+VFD +  RDL+L N ++S  +     D A+++F  +R 
Sbjct: 338 DYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRK 397

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+  +  T ++++ S  +L ++   RQ+H L +K  F  D  V   L+D Y K   + D
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSD 457

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A RVF+  ++ ++++  +M+    Q   G  A+KL  +ML+    PD   L+S+L++C S
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           LS   + +QVHA+ IK    +     NAL+  Y+KCGSI  A   F S+ E  +V+W+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG  K ++E+F +M+   + P+ I    VL AC+H GLV E  RYFN M   + 
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I    EHY+C+ DLLGR G L +A +L+ SMP +  +   GA +GA +VH    L K AA
Sbjct: 638 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAA 697

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           EKL  LEP K   + L++N YAS   W +VA++RK+M+D+   K P  SWIE+  ++HTF
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTF 757

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTL 661
           +  D+SHP    +YA L  +  LM +     NV    + LD+   E  L
Sbjct: 758 IVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLL 806



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/469 (30%), Positives = 243/469 (51%), Gaps = 5/469 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISGII 140
           G Q+H+  M  G  + + + N ++ +Y      DD  ++F+E    RN V+WN L+S  +
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                G+    F  M+   ++     F+ ++ AC  + +IE GR++H+ ++++G+  + F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            ++ALVD+Y K G V+ A  +F+++   D+V WN ++S   LN     AI +   M+  G
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  + FT SS++ +C   G+  LGRQIHG +IK + D D  +   LVDMYAKN  +DDA 
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +VFD M  ++++  N ++ G    G   EA+ L  ++ +     +  TLA++L S  SL 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
            +  TRQVHA A+K G      + N LI++Y KC  ++ A + F      D++  TS+I 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A +     + +I++F +ML   + PD      +L+AC+      +G +    +I     +
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK-RQFM 537

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            D+     L     + G + +A    +S+P E    +  A IG    HG
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 215/431 (49%), Gaps = 19/431 (4%)

Query: 49  LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVY 108
           +R++GTI           SQ L   A    L  G  LH+ ++K G  +  S +N ++  Y
Sbjct: 1   MRSAGTI-----------SQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFY 47

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
            KC+      + FDE+     V+W++L++   N G   +    F  M  + V  +     
Sbjct: 48  SKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALP 107

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC- 225
            +L+ CV   D  +G ++H+  +  GFG + FV++ALV +YG  GF++DARRVF+E    
Sbjct: 108 VVLK-CVP--DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSE 164

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R+ V WN ++S Y  N     AI VF  M   G++   F FS +VN+C    + + GRQ+
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H +V++  +D DV  A +LVDMY K G +D A  +F+ M   +VVSWN ++ G   NG  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             A++LL  M      P+  TL+SIL +C         RQ+H + IK    +   I   L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+K   +  A + F  +   DL+   ++I   +  G   E++ +F ++    +  + 
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 466 IAFLEVLSACS 476
                VL + +
Sbjct: 405 TTLAAVLKSTA 415



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 14/309 (4%)

Query: 35  TNAQKHDRSV-LSSQLRNSGT-IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKL 92
           ++  +HD ++ L  +LR  G  ++ +T +A       LK +A        +Q+H+  +K+
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAA------VLKSTASLEAASTTRQVHALAVKI 433

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYF 150
           G      + N ++  Y KC    D  ++F+E    +I+   ++I+ +  C  G      F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
             ML   +  D    +SLL AC      E G+++H+ ++K  F  + F  +ALV  Y KC
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC 553

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +EDA   F  +  R +V W+ M+   A +  G  A+ +F  M  EG+  ++ T +S++
Sbjct: 554 GSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVL 613

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAK- 327
            +C   G     ++     +K+ F +D      + ++D+  + G +DDA  + + M  + 
Sbjct: 614 CACNHAGLVDEAKRYFN-SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 672

Query: 328 NVVSWNTMV 336
           N   W  ++
Sbjct: 673 NASIWGALL 681


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/615 (32%), Positives = 337/615 (54%), Gaps = 36/615 (5%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           + ES + ++ F     L  SA    + +G++LH H+++  L + + L + ++ +Y KC  
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLR 170
            ++  ++F  +  RN V++N L++G +  G     +  Y      D ++ D  TF +LL 
Sbjct: 428 VEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
            C    +   GR++H+ +++     N  V + LV +Y +CG +  A+ +F+ +  R+   
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 547

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN M+  Y  N     A+ +F  M+L G+K D F+ SS+++SC +L  S+ GR++H  ++
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607

Query: 291 KQSFDLDVLVATSLVDMYAKNGNID-------------------------------DACR 319
           + + + + ++   LVDMYAK G++D                               DA  
Sbjct: 608 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  +N   WN+++ G+   G  +E+     +ML+     D +T+ +I++ C SL  
Sbjct: 668 LFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727

Query: 380 SCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                Q+H+  IK G V   + +E AL++ YSKCG+I  A   F ++   ++V+W ++I 
Sbjct: 728 LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 787

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            Y+ HG SKE++ ++E+M    + P+ + FL +LSACSH GLV EGLR F  M  DY+I 
Sbjct: 788 GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIE 847

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
             +EHYTC+ DLLGR G L +A + +  MPIEP   T GA +GAC+VH  + + + AA++
Sbjct: 848 AKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQR 907

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L EL+P  P  Y ++SN+YA+   W +V  +R+MM+     K PG SWIEI  EI  F +
Sbjct: 908 LFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHA 967

Query: 619 SDRSHPQAVHMYAML 633
             ++HP+   +Y  L
Sbjct: 968 GSKTHPKTEEIYNNL 982



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 145/496 (29%), Positives = 251/496 (50%), Gaps = 34/496 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL+V         GKQ+HS ++  G      + N ++ +Y KC   +   K+FDEM 
Sbjct: 279 FASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG 338

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN VTWN++IS     G   +    F RM     + +     S+L A     DI  GR 
Sbjct: 339 ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRE 398

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  +++     +  + SALVD+Y KCG VE+A +VF  +L R+ V +N +++ Y     
Sbjct: 399 LHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGK 458

Query: 244 GDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            + A+ +++ M+ E G++ D FTF++L+  C    +   GRQIH  +I+ +   +++V T
Sbjct: 459 AEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVET 518

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LV MY++ G ++ A  +F+ M  +N  SWN+M+ G+ QNG+ +EA++L + M      P
Sbjct: 519 ELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKP 578

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  +L+S+LSSC SLS S + R++H + ++N ++    ++  L++ Y+KCGS+  A + +
Sbjct: 579 DCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVY 638

Query: 423 GSVKEPDLV-------------------------------TWTSIIGAYAFHGLSKESIE 451
               + D++                                W SI+  YA  GL KES  
Sbjct: 639 DQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFN 698

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
            F +ML   +  D +  + +++ CS    +  G +  +L+I    +       T L D+ 
Sbjct: 699 HFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMY 758

Query: 512 GRVGLLVEAYDLLASM 527
            + G + +A  +  +M
Sbjct: 759 SKCGAITKARTVFDNM 774



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 215/405 (53%), Gaps = 6/405 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM---EKLFDEMRVRNIVTWNTL 135
            Q+GK +H+ ++  G      L  ++L +Y +    DD+    KLF+EM  RN+  WNT+
Sbjct: 87  FQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTM 146

Query: 136 ISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I           V   + RM       D  TF S+++AC+  +D+   R+L S ++K G 
Sbjct: 147 ILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGL 206

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             N FV  ALVD Y + G+++DA    DE+    +V WN +++ Y      + A  +F+ 
Sbjct: 207 NCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDR 266

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G+  D FTF+S +  CG L S   G+Q+H  +I   F  D  V  +L+DMYAK  +
Sbjct: 267 MLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDD 326

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
            +   +VFD M  +N V+WN+++    Q G   +A+ L   M +  +  +   L SIL +
Sbjct: 327 EESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMA 386

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L+   + R++H + ++N + + + + +AL++ YSKCG +  A Q F S+ E + V++
Sbjct: 387 SAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSY 446

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDSIAFLEVLSACSH 477
            +++  Y   G ++E++E++  M S   ++PD   F  +L+ C++
Sbjct: 447 NALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 192/382 (50%), Gaps = 26/382 (6%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED---A 216
           ++ + ++SL++ C+ ++  + G+ +H+ ++  G+  + ++ + ++ LY + G ++D   A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R++F+E+  R+L  WN M+  YA        + ++  MR  G   D FTF S++ +C  +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                 RQ+   V+K   + ++ V  +LVD YA+ G +DDA    D +   +VV+WN ++
Sbjct: 189 EDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +     EA  +   ML+   CPD  T AS L  CG+L      +QVH+  I  G +
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
               + NALI+ Y+KC      L+ F  + E + VTW SII A A  G   +++ +F +M
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM 368

Query: 457 LSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHYT 505
                + +      +L A +           HG LV       NL+ SD  IL      +
Sbjct: 369 QESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR------NLLNSDI-ILG-----S 416

Query: 506 CLTDLLGRVGLLVEAYDLLASM 527
            L D+  + G++ EA+ +  S+
Sbjct: 417 ALVDMYSKCGMVEEAHQVFRSL 438


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 335/589 (56%), Gaps = 6/589 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ G+Q+H+ ++++G    +   N ++ +Y+K    D    +F++M   ++V+WN LISG
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +        +M    +  +  T +S+L+AC  A   ++GR++H F++K     +
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            ++   LVD+Y K  F++DAR+VFD +  RDL+L N ++S  +     D A+++F  +R 
Sbjct: 338 DYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRK 397

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+  +  T ++++ S  +L ++   RQ+H L +K  F  D  V   L+D Y K   + D
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSD 457

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A RVF+  ++ ++++  +M+    Q   G  A+KL  +ML+    PD   L+S+L++C S
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           LS   + +QVHA+ IK    +     NAL+  Y+KCGSI  A   F S+ E  +V+W+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG  K ++E+F +M+   + P+ I    VL AC+H GLV E  RYFN M   + 
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I    EHY+C+ DLLGR G L +A +L+ SMP +  +   GA +GA +VH    L K AA
Sbjct: 638 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAA 697

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           EKL  LEP K   + L++N YAS   W +VA++RK+M+D+   K P  SWIE+  ++HTF
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTF 757

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTL 661
           +  D+SHP    +YA L  +  LM +     NV    + LD+   E  L
Sbjct: 758 IVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLL 806



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/469 (30%), Positives = 243/469 (51%), Gaps = 5/469 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISGII 140
           G Q+H+  M  G  + + + N ++ +Y      DD  ++F+E    RN V+WN L+S  +
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                G+    F  M+   ++     F+ ++ AC  + +IE GR++H+ ++++G+  + F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            ++ALVD+Y K G V+ A  +F+++   D+V WN ++S   LN     AI +   M+  G
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  + FT SS++ +C   G+  LGRQIHG +IK + D D  +   LVDMYAKN  +DDA 
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +VFD M  ++++  N ++ G    G   EA+ L  ++ +     +  TLA++L S  SL 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
            +  TRQVHA A+K G      + N LI++Y KC  ++ A + F      D++  TS+I 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A +     + +I++F +ML   + PD      +L+AC+      +G +    +I     +
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK-RQFM 537

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            D+     L     + G + +A    +S+P E    +  A IG    HG
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 216/431 (50%), Gaps = 19/431 (4%)

Query: 49  LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVY 108
           +R++GTI           SQ L   A    L  G  LH+ ++K G  +  S +N ++  Y
Sbjct: 1   MRSAGTI-----------SQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFY 47

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
            KC+      ++FDE+     V+W++L++   N G   +    F  M  + V  +     
Sbjct: 48  SKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALP 107

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC- 225
            +L+ CV   D  +G ++H+  +  GFG + FV++ALV +YG  GF++DARRVF+E    
Sbjct: 108 VVLK-CVP--DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSE 164

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R+ V WN ++S Y  N     AI VF  M   G++   F FS +VN+C    + + GRQ+
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H +V++  +D DV  A +LVDMY K G +D A  +F+ M   +VVSWN ++ G   NG  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             A++LL  M      P+  TL+SIL +C         RQ+H + IK    +   I   L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+K   +  A + F  +   DL+   ++I   +  G   E++ +F ++    +  + 
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 466 IAFLEVLSACS 476
                VL + +
Sbjct: 405 TTLAAVLKSTA 415



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 14/309 (4%)

Query: 35  TNAQKHDRSV-LSSQLRNSGT-IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKL 92
           ++  +HD ++ L  +LR  G  ++ +T +A       LK +A        +Q+H+  +K+
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAA------VLKSTASLEAASTTRQVHALAVKI 433

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYF 150
           G      + N ++  Y KC    D  ++F+E    +I+   ++I+ +  C  G      F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
             ML   +  D    +SLL AC      E G+++H+ ++K  F  + F  +ALV  Y KC
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC 553

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +EDA   F  +  R +V W+ M+   A +  G  A+ +F  M  EG+  ++ T +S++
Sbjct: 554 GSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVL 613

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAK- 327
            +C   G     ++     +K+ F +D      + ++D+  + G +DDA  + + M  + 
Sbjct: 614 CACNHAGLVDEAKRYFN-SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 672

Query: 328 NVVSWNTMV 336
           N   W  ++
Sbjct: 673 NASIWGALL 681


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 338/580 (58%), Gaps = 3/580 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  AL+      F++ G+ +H+ I+K      + + N ++ +Y  C   +D E++F  M 
Sbjct: 254 FVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML 313

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V+WNTL+SG++  +   +   +F+ M     + D ++  +++ A  ++ ++  G  
Sbjct: 314 FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGME 373

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H++ +K G   N  + ++L+D+YGKC  V+     F+ +  +DL+ W  +++ YA N  
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNEC 433

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +   ++LE M  D     S++ +C  L S KL ++IHG V+K     D+L+  +
Sbjct: 434 HLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNA 492

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +V++Y +   +D A  VF+ + +K++VSW +M+     NG   EA++L   +++ +  PD
Sbjct: 493 IVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPD 552

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +TL S+L +  +LS   + +++H + I+ G      I N+L++ Y++CG++  A   F 
Sbjct: 553 LITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFN 612

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            VK+ DL+ WTS+I A   HG  K++I++F KM    V PD I FL +L ACSH GLV E
Sbjct: 613 YVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVE 672

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G ++F +M ++Y + P  EHY CL DLL R   L EAY  + +MPIEP ++   A +GAC
Sbjct: 673 GKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGAC 732

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H +  L + AA+KLL+L      NY LVSN +A++  W DV  +R +M+ N   K PG
Sbjct: 733 RIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPG 792

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           CSWIE+  +IHTF++ D+SHPQ  ++Y  L     L++E 
Sbjct: 793 CSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEK 832



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/429 (34%), Positives = 239/429 (55%), Gaps = 15/429 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKL-GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           YSQAL++ A    L QG+QLH+H +K     + + L  + +H+Y KC +F D  K+FD+M
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 125 RVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R I TWN +I   ++ G  V     ++ M +  V LD  TF  +L+AC    +  +G 
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGC 168

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYAL 240
            +H   +K G+G   FV +AL+ +Y KCG +  AR +FD  L    D V WN ++S +  
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAH-- 226

Query: 241 NCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             +G+G    A+++F  M+  G++ + +TF S + +C      K+GR IH +++K +   
Sbjct: 227 --VGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFT 284

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V+ +L+ MYA  G ++DA RVF  M  K+ VSWNT++ G  QN    +A+   +DM 
Sbjct: 285 DVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQ 344

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PD+V++ +++++ G  +      +VHAYAIK+G+ + + I N+LI+ Y KC  + 
Sbjct: 345 DSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVK 404

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
                F  + E DL++WT+II  YA +    +++ +  K+    +  D +    +L ACS
Sbjct: 405 YMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464

Query: 477 HGGLVSEGL 485
             GL SE L
Sbjct: 465 --GLKSEKL 471


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/641 (33%), Positives = 340/641 (53%), Gaps = 71/641 (11%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +++ L    K   + + + +H+ I+K    +++ +QN+++ VY KC   +D  K+FD 
Sbjct: 20  SPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDH 79

Query: 124 MRVRNIVTWNTLISGIINCGG---------------------NVTPYFRR---------- 152
           M+ RN  +WN ++  +   G                       V+ + +R          
Sbjct: 80  MQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFV 139

Query: 153 --MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
             M  ++  L+  +F S L AC    D+ +G ++H  I K  + L+ ++ SALVD+Y KC
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKC 199

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
             V  A+R FD++  R++V WN +++CY  N     A+ VF  M   G++ D  T +S+ 
Sbjct: 200 RVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVA 259

Query: 271 NSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFD------- 322
           ++C +L + + G QIH  V+K   +  D+++  +LVDMYAK   +++A  VFD       
Sbjct: 260 SACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDV 319

Query: 323 ------------------------GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
                                    M  +NVVSWN ++ G+ QNG+  EAV+L   + + 
Sbjct: 320 VSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRE 379

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV------QAFLSIENALINAYSKC 412
           S  P   T  ++L++C +L+     RQ H + +K+G        + + + N+LI+ Y KC
Sbjct: 380 SIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKC 439

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G +      F  + E D V+W ++I  YA +G   E++E+F +ML    RPD +  + VL
Sbjct: 440 GLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVL 499

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH GLV EG  YF  M  ++ ++P  +HYTC+ DLLGR G L EA +L+ +MP+EP 
Sbjct: 500 SACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPD 559

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +   G+ + ACKVHG+I L K+ AE+LLE++P     Y L+SN+YA    W DV R+RK 
Sbjct: 560 AVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQ 619

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           MR     K PGCSWI I   +H F+  D+ HP    +Y +L
Sbjct: 620 MRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLIL 660



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 198/387 (51%), Gaps = 39/387 (10%)

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           R+++ D   LD   F  LL  CV++  +   R +H+ I+K  F    F+ + LVD+YGKC
Sbjct: 8   RKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKC 67

Query: 211 GFVEDARRVFDEVL----------------------------C---RDLVLWNVMVSCYA 239
           GF+EDAR+VFD +                             C   RD   WN MVS +A
Sbjct: 68  GFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFA 127

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                + A+     M  E    + ++F S +++C  L    +G QIHGL+ K  + LDV 
Sbjct: 128 QRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVY 187

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           + ++LVDMY+K   +  A R FD M  +N+VSWN+++  + QNG   +A+++   M+   
Sbjct: 188 MGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG 247

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGA 418
             PDE+TLAS+ S+C SLS   E  Q+HA  +K +  +  L + NAL++ Y+KC  +  A
Sbjct: 248 IEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEA 307

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  +   D+V+ TS++  YA       S++    M S+ +  + +++  +++  +  
Sbjct: 308 RLVFDRMPLRDVVSETSMVSGYA----KASSVKAARLMFSNMMERNVVSWNALIAGYTQN 363

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYT 505
           G   E +R F L++    I P   HYT
Sbjct: 364 GENEEAVRLF-LLLKRESIWP--THYT 387



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 50/286 (17%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNK------LSLQNQVLHVYVK 110
           ES    H  +   L   A    L+ G+Q H+HI+K G   K      + + N ++ +Y+K
Sbjct: 379 ESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMK 438

Query: 111 CKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSL 168
           C   +D   +F+ M  R+ V+WN +I G      G      FR ML+   R DH+T   +
Sbjct: 439 CGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGV 498

Query: 169 LRACVQADDIEVGR-RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           L AC  A  +E GR    S  ++ G        + +VDL G+ G +++A           
Sbjct: 499 LSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEAN---------- 548

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
                                   NL++   M+ D   + SL+ +C   G+  LG+    
Sbjct: 549 ------------------------NLIQTMPMEPDAVVWGSLLAACKVHGNITLGK---- 580

Query: 288 LVIKQSFDLDVLVATSLV---DMYAKNGNIDDACRVFDGMTAKNVV 330
            V ++  ++D L +   V   +MYA+ G   D  RV   M    V+
Sbjct: 581 YVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVI 626



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D    A +L +C       E R VHA  IK    + + I+N L++ Y KCG +  A + F
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +++ +  +W +++GA    G   E++ +F+ M       D  ++  ++S  +      
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPER----DQCSWNAMVSGFAQRDRFE 133

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
           E LR+   M S+  +L +    + L+   G + L
Sbjct: 134 EALRFVVDMHSEDFVLNEYSFGSALSACAGLMDL 167


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 329/564 (58%), Gaps = 6/564 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ LH   +K GL N + + + ++ +Y+K    +   ++F +M  RN+V+W  +I+G+++
Sbjct: 176 GELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVH 235

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N+    YF  M +  V  D  TF   L+A   +  +  G+ +H+  +K GF  + FV
Sbjct: 236 AGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 295

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            + L  +Y KCG  +   R+F+++   D+V W  +++ Y      + A+  F  MR   +
Sbjct: 296 INTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNV 355

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +TF++++++C  L  +K G QIHG V++      + VA S+V +Y+K+G +  A  
Sbjct: 356 SPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASL 415

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF G+T K+++SW+T++  + Q G  +EA   L  M +    P+E  L+S+LS CGS+++
Sbjct: 416 VFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 475

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +QVHA+ +  G+     + +ALI+ YSKCGS+  A + F  +K  ++++WT++I  
Sbjct: 476 LEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMING 535

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E+I +FEK+ S  ++PD + F+ VL+ACSH G+V  G  YF LM ++Y I P
Sbjct: 536 YAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISP 595

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ DLL R G L EA  ++ SMP           + +C+VHG +   +W AE+L
Sbjct: 596 SKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQL 655

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L L+P+    +  ++N+YA++  W + A +RK+M+     K  G SW+ +  +++ FV+ 
Sbjct: 656 LRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAG 715

Query: 620 DRSHPQAVHMYAMLCTVFGLMEEN 643
           D++HPQ+ H    + TV  L+  N
Sbjct: 716 DQAHPQSEH----ITTVLELLSAN 735



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 202/410 (49%), Gaps = 4/410 (0%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
            +QQ KQ         + N L L N  L   VK         +FD+M  R+ ++W TLI+
Sbjct: 71  LIQQAKQEQLAQNAYSVHNMLEL-NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIA 129

Query: 138 GIINCGGNVTPY--FRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G +N   +      F  M +   ++ D    +  L+AC    +I  G  LH F +K G  
Sbjct: 130 GYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLI 189

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FVSSAL+D+Y K G +E   RVF ++  R++V W  +++          A+  F+ M
Sbjct: 190 NSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEM 249

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            +  +  D  TF+  + +         G+ IH   IKQ FD    V  +L  MY K G  
Sbjct: 250 WISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKA 309

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D   R+F+ M   +VVSW T++  + Q G+   AV+  + M + +  P++ T A+++S+C
Sbjct: 310 DYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISAC 369

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            +L+I+    Q+H + ++ G+   LS+ N+++  YSK G +  A   F  +   D+++W+
Sbjct: 370 ANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWS 429

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +II  Y+  G +KE+ +    M     +P+  A   VLS C    L+ +G
Sbjct: 430 TIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQG 479



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 238/496 (47%), Gaps = 53/496 (10%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I +  + +H+F + ALK SA    L  GK +H+  +K G      + N +  +Y KC   
Sbjct: 251 ISKVGYDSHTF-AIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKA 309

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D + +LF++M++ ++V+W TLI+  +  G   +    F+RM   NV  +  TF +++ AC
Sbjct: 310 DYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISAC 369

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                 + G ++H  +L++G      V++++V LY K G ++ A  VF  +  +D++ W+
Sbjct: 370 ANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWS 429

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++ Y+       A    + MR EG K + F  SS+++ CG++   + G+Q+H  V+  
Sbjct: 430 TIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCI 489

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             D + +V ++L+ MY+K G++++A ++F+GM   N++SW  M+ G+ ++G  +EA+ L 
Sbjct: 490 GIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLF 549

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA-------- 404
             +      PD VT   +L++C            HA  +  G   F+ + N         
Sbjct: 550 EKISSVGLKPDYVTFIGVLTACS-----------HAGMVDLGFYYFMLMTNEYQISPSKE 598

Query: 405 ----LINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
               +I+   + G ++ A     S+    D V W++++ +   HG         E++L  
Sbjct: 599 HYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLR- 657

Query: 460 AVRPDS----IAFLEVLSA--------------CSHGGLVSEGLRYFNL------MISDY 495
            + P+S    IA   + +A               S G +   G  + N+       ++  
Sbjct: 658 -LDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGD 716

Query: 496 HILPDSEHYTCLTDLL 511
              P SEH T + +LL
Sbjct: 717 QAHPQSEHITTVLELL 732


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/627 (33%), Positives = 333/627 (53%), Gaps = 38/627 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK    +  L++ +++H+ +   G+   +++   ++ +Y KC       ++F +M+ RN+
Sbjct: 186 LKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNV 245

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W  +I               + +ML   +  + +TF SLL +C   + +  GRR+HS 
Sbjct: 246 VSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 305

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I + G   +  V++AL+ +Y KC  ++DAR  FD +  RD++ W+ M++ YA +   D  
Sbjct: 306 ISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKE 365

Query: 248 I--AVFNL---MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               VF L   MR EG+  +  TF S++ +C   G+ + GRQIH  + K  F+ D  + T
Sbjct: 366 SLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQT 425

Query: 303 SLVDMYAKNGNIDDA------------------------C-------RVFDGMTAKNVVS 331
           ++ +MYAK G+I +A                        C       +VF  M+ +NVVS
Sbjct: 426 AIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVS 485

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN M+ G+ Q+GD  +  +LL  M    F PD VT+ SIL +CG+LS     + VHA A+
Sbjct: 486 WNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAV 545

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           K G+++   +  +LI  YSKCG +  A   F  +   D V W +++  Y  HG+  E+++
Sbjct: 546 KLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVD 605

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F++ML   V P+ I F  V+SAC   GLV EG   F +M  D+ + P  +HY C+ DLL
Sbjct: 606 LFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLL 665

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G L EA + +  MP EP      A +GACK H ++ LA+WAA  +L LEPS    Y 
Sbjct: 666 GRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYV 725

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
            +SN+YA    W D  ++RK+M D    K  G S IEI G IHTFV+ D +HP+   ++A
Sbjct: 726 TLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHA 785

Query: 632 MLCTVFGLMEENNVSGHCNVLDKEMDE 658
            L  +   M+E   +     +  ++DE
Sbjct: 786 ELEMLTKEMKEAGYTPDMRFVLHDVDE 812



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 241/483 (49%), Gaps = 56/483 (11%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK    + GK +H  + +LGL   + L N +++ Y K      +E++F  M +R++VTW+
Sbjct: 89  AKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWS 148

Query: 134 TLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           ++I+      GN  P      F RM   N+  + ITF S+L+AC     +E  R +H+ +
Sbjct: 149 SMIAAY---AGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVV 205

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
              G   +  V++AL+ +Y KCG +  A  +F ++  R++V W  ++   A +   + A 
Sbjct: 206 KASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAF 265

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            ++  M   G+  +  TF SL+NSC T  +   GR+IH  + ++  + DV+VA +L+ MY
Sbjct: 266 ELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMY 325

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG--DGR---EAVKLLRDMLQGSFCPD 363
            K   I DA   FD M+ ++V+SW+ M+ G+ Q+G  D     E  +LL  M +    P+
Sbjct: 326 CKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPN 385

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           +VT  SIL +C       + RQ+HA   K G ++  S++ A+ N Y+KCGSI  A Q F 
Sbjct: 386 KVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFS 445

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++  ++V W S++  Y   G    + +VF +M +  V                   VS 
Sbjct: 446 KMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNV-------------------VS- 485

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE---PRSDTLGAFI 540
               +NLMI+ Y                 + G + + ++LL+SM +E   P   T+ + +
Sbjct: 486 ----WNLMIAGY----------------AQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525

Query: 541 GAC 543
            AC
Sbjct: 526 EAC 528



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 192/369 (52%), Gaps = 6/369 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  ++  C +    E G+ +H  + ++G  ++ ++ ++L++ Y K G V    +VF  +
Sbjct: 80  TYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRM 139

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RD+V W+ M++ YA N     A   F  M+   ++ +  TF S++ +C      +  R
Sbjct: 140 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAR 199

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IH +V     + DV VAT+L+ MY+K G I  AC +F  M  +NVVSW  ++    Q+ 
Sbjct: 200 EIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHR 259

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA +L   MLQ    P+ VT  S+L+SC +       R++H++  + G++  + + N
Sbjct: 260 KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVAN 319

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS-KESI-EVF---EKMLS 458
           ALI  Y KC  I  A + F  + + D+++W+++I  YA  G   KES+ EVF   E+M  
Sbjct: 320 ALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRR 379

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             V P+ + F+ +L ACS  G + +G R  +  IS      D    T + ++  + G + 
Sbjct: 380 EGVFPNKVTFMSILKACSVHGALEQG-RQIHAEISKVGFESDRSLQTAIFNMYAKCGSIY 438

Query: 519 EAYDLLASM 527
           EA  + + M
Sbjct: 439 EAEQVFSKM 447



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 135/240 (56%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI +  +++  G+  +  T+  ++  C  L   + G+ +H  + +    +D+ +  SL++
Sbjct: 62  AIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLIN 121

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            Y+K G++    +VF  MT ++VV+W++M+  +  N    +A      M   +  P+ +T
Sbjct: 122 FYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRIT 181

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             SIL +C + S+  + R++H     +G++  +++  ALI  YSKCG I+ A + F  +K
Sbjct: 182 FLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMK 241

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E ++V+WT+II A A H    E+ E++EKML   + P+++ F+ +L++C+    ++ G R
Sbjct: 242 ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRR 301



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G  +EA++LL  + Q     +  T   I+  C  L    + + VH    + G+   + + 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N+LIN YSK G +A   Q F  +   D+VTW+S+I AYA +    ++ + FE+M    + 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+ I FL +L AC++  ++ E  R  + ++    +  D    T L  +  + G +  A +
Sbjct: 177 PNRITFLSILKACNNYSML-EKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACE 235

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           +   M  E    +  A I A   H  +  A    EK+L+
Sbjct: 236 IFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ 273


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 327/594 (55%), Gaps = 9/594 (1%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
            L  Q+  SG I +     H  +   +K  +     +  +QLH+H++K      L  QN 
Sbjct: 185 TLYVQMLRSGHIPD-----HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNA 239

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNV-RL 160
           ++ +Y K     D   +F  + ++++++W ++I+G    G  +    +FR ML  +V + 
Sbjct: 240 LISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQP 299

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +   F S   AC +  + + GR++H   +K G G + F   +L D+Y KCGF+E AR VF
Sbjct: 300 NEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +   DLV WN +++ +A       + + F+ MR  G+  +  T  SL+ +C       
Sbjct: 360 YHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLN 419

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGF 339
            G Q+H  ++K  F+LD+ V  SL+ MY+K  N++DA +VF+ +  K ++VSWNT++   
Sbjct: 420 HGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC 479

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q     E ++L + M      PD VTL ++L S G ++      Q+H + +K+G+   +
Sbjct: 480 LQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDI 539

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           S+ NALIN Y+KCGS+  A + F S+  PD+++W+S+I  YA  G  KE+ E+F  M   
Sbjct: 540 SVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGL 599

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V+P+ I F+ +L+ACSH G+V EGL+ +  M  DY I P  EH +C+ DLL R G L  
Sbjct: 600 GVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDV 659

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A D +  MP  P        + ACKVHG++ + K AAE +L+++PS      ++ N++AS
Sbjct: 660 AEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHAS 719

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              W D ARLR  MR     KVPG SWIEI  ++H F++ D  HP+   +Y ML
Sbjct: 720 SGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTML 773



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 214/411 (52%), Gaps = 4/411 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  +   +    L+ G+++H H++       + LQN +L +Y KC +  +   +FD M 
Sbjct: 101 YTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMP 160

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++N+V+W ++ISG    G   N    + +ML      DH TF S++++C   DD ++ R+
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQ 220

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ +LK  FG +    +AL+ +Y K   + DA  VF  ++ +DL+ W  M++ ++    
Sbjct: 221 LHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGY 280

Query: 244 GDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
              A+  F  M  + + + + F F S  ++C  L     GRQIHGL IK     D+    
Sbjct: 281 ELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGC 340

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL DMYAK G ++ A  VF  +   ++V+WN ++ GF    + +E+      M      P
Sbjct: 341 SLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVP 400

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++VT+ S+L +C    +     QVH+Y +K G    + + N+L++ YSKC ++  ALQ F
Sbjct: 401 NDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVF 460

Query: 423 GSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
             +  + D+V+W +++ A      + E + + + M +  ++PD +    VL
Sbjct: 461 EDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 181/334 (54%), Gaps = 1/334 (0%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L  +T+  L+ AC     +E GR++H  +L   +  +  + + ++ +YGKCG +++AR +
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNM 155

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD +  +++V W  M+S Y+     D AI ++  M   G   D+FTF S+V SC  L   
Sbjct: 156 FDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDF 215

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           KL RQ+H  V+K  F  D++   +L+ MY K   + DA  VF  +  K+++SW +M+ GF
Sbjct: 216 KLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGF 275

Query: 340 GQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            Q G   EA+   R+ML Q  + P+E    S  S+C  L      RQ+H   IK G+ + 
Sbjct: 276 SQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD 335

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L    +L + Y+KCG +  A   F  +++PDLV W +II  +A    +KES   F +M  
Sbjct: 336 LFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRH 395

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             + P+ +  L +L ACS   +++ G++  + ++
Sbjct: 396 TGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIV 429


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 340/582 (58%), Gaps = 8/582 (1%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           +E T      ++ AL V A+ G   +G Q+H+ ++K GL   + + N ++++Y+KC    
Sbjct: 187 NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVR 246

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACV 173
               LFD+  V+++VTWN++ISG    G ++     F  M L+ VRL   +F S+++ C 
Sbjct: 247 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWN 232
              ++    +LH  ++K GF  +  + +AL+  Y KC  + DA R+F E+ C  ++V W 
Sbjct: 307 NLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWT 366

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M+S +  N   + A+ +F+ M+ +G++ + FT+S ++ +   +  S    ++H  V+K 
Sbjct: 367 AMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVHAQVVKT 422

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           +++    V T+L+D Y K G +++A +VF G+  K++V+W+ M+ G+ Q G+   A+K+ 
Sbjct: 423 NYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMF 482

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISC-ETRQVHAYAIKNGVQAFLSIENALINAYSK 411
            ++ +G   P+E T +SIL+ C + + S  + +Q H +AIK+ + + L + +AL+  Y+K
Sbjct: 483 GELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 542

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
            G+I  A + F   +E DLV+W S+I  YA HG + ++++VF++M    V+ D + F+ V
Sbjct: 543 KGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGV 602

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
            +AC+H GLV EG +YF++M+ D  I P  EH +C+ DL  R G L +A  ++ +MP   
Sbjct: 603 FAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPA 662

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
            S      + AC+VH    L + AAEK++ ++P     Y L+SN+YA    W + A++RK
Sbjct: 663 GSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRK 722

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +M +    K PG SWIE+  + ++F++ DRSHP    +Y  L
Sbjct: 723 LMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKL 764



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/416 (32%), Positives = 222/416 (53%), Gaps = 7/416 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +S  LKVSA       G+QLH   +K G  + +S+   ++  Y+K   F D  K+FDE
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 124 MRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M+ RN+VTW TLISG      N  V   F RM  +  + +  TF + L    +      G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++H+ ++K G      VS++L++LY KCG V  AR +FD+   + +V WN M+S YA N
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            L   A+ +F  MRL  ++    +F+S++  C  L   +   Q+H  V+K  F  D  + 
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query: 302 TSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           T+L+  Y+K   + DA R+F  +    NVVSW  M+ GF QN    EAV L  +M +   
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+E T + IL++   +S S    +VHA  +K   +   ++  AL++AY K G +  A +
Sbjct: 394 RPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 449

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            F  + + D+V W++++  YA  G ++ +I++F ++    ++P+   F  +L+ C+
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCA 505



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 192/360 (53%), Gaps = 7/360 (1%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL----DHITFNSLLRACVQA 175
           LFD+   R+  ++ +L+ G    G   T   +R+ L+  RL    D   F+S+L+     
Sbjct: 49  LFDKSPGRDRESYISLLFGFSRDGR--TQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATL 106

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D   GR+LH   +K GF  +  V ++LVD Y K    +D R+VFDE+  R++V W  ++
Sbjct: 107 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI 166

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S YA N + D  + +F  M+ EG + + FTF++ +      G    G Q+H +V+K   D
Sbjct: 167 SGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD 226

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
             + V+ SL+++Y K GN+  A  +FD    K+VV+WN+M+ G+  NG   EA+ +   M
Sbjct: 227 KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM 286

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                   E + AS++  C +L     T Q+H   +K G     +I  AL+ AYSKC ++
Sbjct: 287 RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAM 346

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
             AL+ F  +    ++V+WT++I  +  +   +E++++F +M    VRP+   +  +L+A
Sbjct: 347 LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 133/264 (50%), Gaps = 2/264 (0%)

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSC 273
           +A  +FD+   RD   +  ++  ++ +     A  +F N+ RL GM+ D   FSS++   
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRL-GMEMDCSIFSSVLKVS 103

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
            TL     GRQ+H   IK  F  DV V TSLVD Y K  N  D  +VFD M  +NVV+W 
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWT 163

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           T++ G+ +N    E + L   M      P+  T A+ L       +     QVH   +KN
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G+   + + N+LIN Y KCG++  A   F   +   +VTW S+I  YA +GL  E++ +F
Sbjct: 224 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283

Query: 454 EKMLSHAVRPDSIAFLEVLSACSH 477
             M  + VR    +F  V+  C++
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCAN 307



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 91/179 (50%)

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A  +FD    ++  S+ +++ GF ++G  +EA +L  ++ +     D    +S+L    
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +L      RQ+H   IK G    +S+  +L++ Y K  +     + F  +KE ++VTWT+
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +I  YA + ++ E + +F +M +   +P+S  F   L   +  G+   GL+   +++ +
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 319/571 (55%), Gaps = 5/571 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  ++  AK   L++GKQLH+ ++  G      L N ++++Y KC   D   KLFD M  
Sbjct: 9   AHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W  +ISG+            F  M +         F+S +RAC     IE+G+++
Sbjct: 69  RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H   LK G G   FV S L D+Y KCG + DA +VF+E+ C+D V W  M+  Y+     
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 188

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+  F  M  E +  D     S + +CG L + K GR +H  V+K  F+ D+ V  +L
Sbjct: 189 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 248

Query: 305 VDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            DMY+K G+++ A  VF G+ +  +NVVS+  ++ G+ +     + + +  ++ +    P
Sbjct: 249 TDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E T +S++ +C + +   +  Q+HA  +K        + + L++ Y KCG +  A+Q F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAF 367

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + +P  + W S++  +  HGL K++I+ FE+M+   V+P++I F+ +L+ CSH GLV 
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVE 427

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGL YF  M   Y ++P  EHY+C+ DLLGR G L EA + +  MP EP +    +F+GA
Sbjct: 428 EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGA 487

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++HG   + K AAEKL++LEP       L+SN+YA+ER W DV  +R  MRD    K+P
Sbjct: 488 CRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLP 547

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G SW+++  + H F + D SH +   +Y  L
Sbjct: 548 GYSWVDVGYKTHVFGAEDWSHXRKSAIYEKL 578



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 217/424 (51%), Gaps = 29/424 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A++  A  G ++ GKQ+H   +K G+ ++L + + +  +Y KC A  D  K+F+EM 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V+W  +I G    G        F++M+ + V +D     S L AC      + GR 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNC 242
           +HS ++K+GF  + FV +AL D+Y K G +E A  VF  +  CR++V +  ++  Y    
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             +  ++VF  +R +G++ + FTFSSL+ +C    + + G Q+H  V+K +FD D  V++
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LVDMY K G ++ A + FD +     ++WN++V  FGQ+G G++A+K    M+     P
Sbjct: 349 ILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKP 408

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA------------LINAYS 410
           + +T  S+L+ C            HA  ++ G+  F S++              +I+   
Sbjct: 409 NAITFISLLTGCS-----------HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLG 457

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           + G +  A +    +  EP+   W S +GA   HG  +      EK++   + P +   L
Sbjct: 458 RAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGAL 515

Query: 470 EVLS 473
            +LS
Sbjct: 516 VLLS 519



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 2/201 (0%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   LA ++ +          +Q+HA  I  G      + N L+N YSKCG +  AL+ F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            ++ + +LV+WT++I   + +    E+I  F  M      P   AF   + AC+  G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
            G +   L +  + I  +    + L D+  + G + +A  +   MP +          G 
Sbjct: 124 MGKQMHCLALK-FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 543 CKVHGSIGLAKWAAEKLLELE 563
            K+ G    A  A +K+++ E
Sbjct: 183 SKI-GEFEEALLAFKKMIDEE 202


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 327/594 (55%), Gaps = 9/594 (1%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
            L  Q+  SG I +     H  +   +K  +     +  +QLH+H++K      L  QN 
Sbjct: 185 TLYVQMLRSGHIPD-----HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNA 239

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNV-RL 160
           ++ +Y K     D   +F  + ++++++W ++I+G    G  +    +FR ML  +V + 
Sbjct: 240 LISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQP 299

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +   F S   AC +  + + GR++H   +K G G + F   +L D+Y KCGF+E AR VF
Sbjct: 300 NEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +   DLV WN +++ +A       + + F+ MR  G+  +  T  SL+ +C       
Sbjct: 360 YHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLN 419

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGF 339
            G Q+H  ++K  F+LD+ V  SL+ MY+K  N++DA +VF+ +  K ++VSWNT++   
Sbjct: 420 HGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC 479

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q     E ++L + M      PD VTL ++L S G ++      Q+H + +K+G+   +
Sbjct: 480 LQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDI 539

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           S+ NALIN Y+KCGS+  A + F S+  PD+++W+S+I  YA  G  KE+ E+F  M   
Sbjct: 540 SVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGL 599

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V+P+ I F+ +L+ACSH G+V EGL+ +  M  DY I P  EH +C+ DLL R G L  
Sbjct: 600 GVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDV 659

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A D +  MP  P        + ACKVHG++ + K AAE +L+++PS      ++ N++AS
Sbjct: 660 AEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHAS 719

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              W D ARLR  MR     KVPG SWIEI  ++H F++ D  HP+   +Y ML
Sbjct: 720 SGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTML 773



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 214/411 (52%), Gaps = 4/411 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  +   +    L+ G+++H H++       + LQN +L +Y KC +  +   +FD M 
Sbjct: 101 YTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMP 160

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++N+V+W ++ISG    G   N    + +ML      DH TF S++++C   DD ++ R+
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQ 220

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ +LK  FG +    +AL+ +Y K   + DA  VF  ++ +DL+ W  M++ ++    
Sbjct: 221 LHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGY 280

Query: 244 GDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
              A+  F  M  + + + + F F S  ++C  L     GRQIHGL IK     D+    
Sbjct: 281 ELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGC 340

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL DMYAK G ++ A  VF  +   ++V+WN ++ GF    + +E+      M      P
Sbjct: 341 SLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVP 400

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++VT+ S+L +C    +     QVH+Y +K G    + + N+L++ YSKC ++  ALQ F
Sbjct: 401 NDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVF 460

Query: 423 GSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
             +  + D+V+W +++ A      + E + + + M +  ++PD +    VL
Sbjct: 461 EDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 181/334 (54%), Gaps = 1/334 (0%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L  +T+  L+ AC     +E GR++H  +L   +  +  + + ++ +YGKCG +++AR +
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNM 155

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD +  +++V W  M+S Y+     D AI ++  M   G   D+FTF S+V SC  L   
Sbjct: 156 FDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDF 215

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           KL RQ+H  V+K  F  D++   +L+ MY K   + DA  VF  +  K+++SW +M+ GF
Sbjct: 216 KLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGF 275

Query: 340 GQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            Q G   EA+   R+ML Q  + P+E    S  S+C  L      RQ+H   IK G+ + 
Sbjct: 276 SQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD 335

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L    +L + Y+KCG +  A   F  +++PDLV W +II  +A    +KES   F +M  
Sbjct: 336 LFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRH 395

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             + P+ +  L +L ACS   +++ G++  + ++
Sbjct: 396 TGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIV 429


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/626 (34%), Positives = 343/626 (54%), Gaps = 36/626 (5%)

Query: 43  SVLSSQLRNS--GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL 100
           SV S++L     G +  S  ++H+ Y+ AL+   +     +GK LH  I+K G C  L  
Sbjct: 17  SVQSAKLTQEFVGHVSPSEFNSHA-YANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFA 75

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNV 158
            N +L++YVK     D  KLFDEM  RN +++ TLI G             F R+  +  
Sbjct: 76  WNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGH 135

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            L+   F ++L+  V  D  E+G  +H+ I K+G   N FV +AL+D Y  CG V+ AR 
Sbjct: 136 ELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVARE 195

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VFD +L +D+V W  MV+C+A N     A+ +F+ MR+ G K + FTF+S+  +C  L +
Sbjct: 196 VFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEA 255

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
             +G+ +HG  +K  ++LD+ V  +L+D+Y K+G+IDDA R F+ +  K+V+ W+ M+  
Sbjct: 256 FDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIAR 315

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           + Q+   +EAV++   M Q    P++ T AS+L +C ++       Q+H + IK G+ + 
Sbjct: 316 YAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSD 375

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + NAL++ Y+KCG +  +++ F      + VTW ++I  +   G  ++++ +F  ML 
Sbjct: 376 VFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLE 435

Query: 459 H-------------------------------AVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           +                                V+PD + F+ VLSAC++ GL+ +G  Y
Sbjct: 436 YRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAY 495

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  MI D+ I P  EHYTC+  LLGR G L +A  L+  +P +P      A +GAC +H 
Sbjct: 496 FTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHN 555

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
            I L + +A+++LE+EP     + L+SN+YA+ + W +VA +RK M+     K PG SWI
Sbjct: 556 DIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWI 615

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E  G +H+F   D SHP+   +  ML
Sbjct: 616 ESQGTVHSFTVGDTSHPEVRVINGML 641


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 338/605 (55%), Gaps = 19/605 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H++ ++ G  N   + N ++ +Y K       + L      R++VTWNT++S 
Sbjct: 218 LMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS 276

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGL 195
           +           Y R M+L+ V  D  T +S+L AC   + +  G+ LH++ LK G    
Sbjct: 277 LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 336

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLM 254
           N FV SALVD+Y  C  V   RRVFD +  R + LWN M++ Y+ N     A+ +F  + 
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  +  T + +V +C   G+      IHG V+K+  D D  V  +L+DMY++ G I
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-----------QGSFCPD 363
           D A R+F  M  +++V+WNTM+ G+  +    +A+ LL  M            + S  P+
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +TL +IL SC +LS   + +++HAYAIKN +   +++ +AL++ Y+KCG +  + + F 
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + +++TW  II AY  HG  +E+I++   M+   V+P+ + F+ V +ACSH G+V E
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE-PRSDTLGAFIGA 542
           GLR F +M  DY + P S+HY C+ DLLGR G + EAY L+  MP +  ++    + +GA
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
            ++H ++ + + AA+ L++LEP+   +Y L++N+Y+S   W     +R+ M++    K P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV--SGHCNVLDKEMDECT 660
           GCSWIE   E+H FV+ D SHPQ+  +   L T++  M +        C + + E DE  
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816

Query: 661 LWLPG 665
           + L G
Sbjct: 817 ILLCG 821



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 253/502 (50%), Gaps = 22/502 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           +   LK  A    ++ GKQ+H+H+ K G   + +++ N ++++Y KC  F  + K+FD +
Sbjct: 100 FPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI 159

Query: 125 RVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ---ADDIE 179
             RN V+WN+LIS +            FR ML +NV     T  S++ AC      + + 
Sbjct: 160 SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM 219

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G+++H++ L+ G  LN F+ + LV +YGK G +  ++ +      RDLV WN ++S   
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDV 298
            N     A+     M LEG++ D FT SS++ +C  L   + G+++H   +K  S D + 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V ++LVDMY     +    RVFDGM  + +  WN M+ G+ QN   +EA+ L   M + 
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398

Query: 359 S-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           +    +  T+A ++ +C           +H + +K G+     ++N L++ YS+ G I  
Sbjct: 399 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 458

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-----------AVRPDSI 466
           A++ FG +++ DLVTW ++I  Y F    ++++ +  KM +            +++P+SI
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             + +L +C+    +++G       I + ++  D    + L D+  + G L  +  +   
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577

Query: 527 MPIEPRSDTLGAFIGACKVHGS 548
           +P +    T    I A  +HG+
Sbjct: 578 IP-QKNVITWNVIIMAYGMHGN 598



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 199/401 (49%), Gaps = 30/401 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL-HVYVKCKAFDDMEKLFDEMR 125
           S  L   +    L+ GK+LH++ +K G  ++ S     L  +Y  CK      ++FD M 
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDH--------ITFNSLLRACVQADD 177
            R I  WN +I+G      +   + +  LL  + ++          T   ++ ACV++  
Sbjct: 366 DRKIGLWNAMIAGY-----SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
                 +H F++K G   + FV + L+D+Y + G ++ A R+F ++  RDLV WN M++ 
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 238 YALNCLGDGAIAVFNLMR-LE----------GMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           Y  +   + A+ + + M+ LE           +K +  T  +++ SC  L +   G++IH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              IK +   DV V ++LVDMYAK G +  + +VFD +  KNV++WN +++ +G +G+G+
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENA 404
           EA+ LLR M+     P+EVT  S+ ++C    +  E  ++  Y +K   GV+        
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYAC 659

Query: 405 LINAYSKCGSIAGALQCFGSVKEP--DLVTWTSIIGAYAFH 443
           +++   + G I  A Q    +         W+S++GA   H
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIH 700



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 178/336 (52%), Gaps = 7/336 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF-VSSALVDLYGKCG 211
           M++  ++ D+  F +LL+A     D+E+G+++H+ + K G+G++   V++ LV+LY KCG
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                 +VFD +  R+ V WN ++S        + A+  F  M  E ++   FT  S+V 
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 272 SCGTLGSSK---LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +C  L   +   +G+Q+H   +++  +L+  +  +LV MY K G +  +  +      ++
Sbjct: 208 ACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD 266

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           +V+WNT++    QN    EA++ LR+M+     PDE T++S+L +C  L +    +++HA
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 389 YAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           YA+KNG +     + +AL++ Y  C  +    + F  + +  +  W ++I  Y+ +   K
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 448 ESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVS 482
           E++ +F  M   A +  +S     V+ AC   G  S
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 8/249 (3%)

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VL 299
           N L +  +   +++ L G+K D + F +L+ +   L   +LG+QIH  V K  + +D V 
Sbjct: 76  NLLREAVLTYVDMIVL-GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT 134

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           VA +LV++Y K G+     +VFD ++ +N VSWN+++           A++  R ML  +
Sbjct: 135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEN 194

Query: 360 FCPDEVTLASILSSCGSLSIS---CETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSI 415
             P   TL S++++C +L +       +QVHAY ++ G + +F  I N L+  Y K G +
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKL 252

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A +    GS    DLVTW +++ +   +    E++E   +M+   V PD      VL AC
Sbjct: 253 ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPAC 312

Query: 476 SHGGLVSEG 484
           SH  ++  G
Sbjct: 313 SHLEMLRTG 321



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 164/332 (49%), Gaps = 28/332 (8%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G   + + +H  ++K GL     +QN ++ +Y +    D   ++F +M  R++VTWNT+I
Sbjct: 419 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 478

Query: 137 SGII----------------NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +G +                N    V+    R+   +++ + IT  ++L +C     +  
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRV---SLKPNSITLMTILPSCAALSALAK 535

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G+ +H++ +K     +  V SALVD+Y KCG ++ +R+VFD++  ++++ WNV++  Y +
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +  G  AI +  +M ++G+K +  TF S+  +C   G    G +I   V+K  + ++   
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSS 654

Query: 301 --ATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRD-- 354
                +VD+  + G I +A ++ + M        +W+++ +G  +  +  E  ++     
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL-LGASRIHNNLEIGEIAAQNL 713

Query: 355 -MLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
             L+ +     V LA+I SS G    + E R+
Sbjct: 714 IQLEPNVASHYVLLANIYSSAGLWDKATEVRR 745



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L +GK++H++ +K  L   +++ + ++ +Y KC       K+FD++  +N++TWN
Sbjct: 528 AALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWN 587

Query: 134 TLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I   G+   G       R M++  V+ + +TF S+  AC  +  ++ G R+  +++K 
Sbjct: 588 VIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKP 646

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV---LWNVMVSCYAL-NCLGD 245
            +G+       + +VDL G+ G +++A ++ + ++ RD      W+ ++    + N L  
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN-MMPRDFNKAGAWSSLLGASRIHNNLEI 705

Query: 246 GAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
           G IA  NL++LE  +   Y   +++ +S G
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAG 735


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 338/605 (55%), Gaps = 19/605 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H++ ++ G  N   + N ++ +Y K       + L      R++VTWNT++S 
Sbjct: 218 LMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS 276

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGL 195
           +           Y R M+L+ V  D  T +S+L AC   + +  G+ LH++ LK G    
Sbjct: 277 LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 336

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLM 254
           N FV SALVD+Y  C  V   RRVFD +  R + LWN M++ Y+ N     A+ +F  + 
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  +  T + +V +C   G+      IHG V+K+  D D  V  +L+DMY++ G I
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-----------QGSFCPD 363
           D A R+F  M  +++V+WNTM+ G+  +    +A+ LL  M            + S  P+
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +TL +IL SC +LS   + +++HAYAIKN +   +++ +AL++ Y+KCG +  + + F 
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + +++TW  II AY  HG  +E+I++   M+   V+P+ + F+ V +ACSH G+V E
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE-PRSDTLGAFIGA 542
           GLR F +M  DY + P S+HY C+ DLLGR G + EAY L+  MP +  ++    + +GA
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
            ++H ++ + + AA+ L++LEP+   +Y L++N+Y+S   W     +R+ M++    K P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV--SGHCNVLDKEMDECT 660
           GCSWIE   E+H FV+ D SHPQ+  +   L T++  M +        C + + E DE  
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816

Query: 661 LWLPG 665
           + L G
Sbjct: 817 ILLCG 821



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 253/502 (50%), Gaps = 22/502 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           +   LK  A    ++ GKQ+H+H+ K G   + +++ N ++++Y KC  F  + K+FD +
Sbjct: 100 FPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI 159

Query: 125 RVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ---ADDIE 179
             RN V+WN+LIS +            FR ML +NV     T  S++ AC      + + 
Sbjct: 160 SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM 219

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G+++H++ L+ G  LN F+ + LV +YGK G +  ++ +      RDLV WN ++S   
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDV 298
            N     A+     M LEG++ D FT SS++ +C  L   + G+++H   +K  S D + 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V ++LVDMY     +    RVFDGM  + +  WN M+ G+ QN   +EA+ L   M + 
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398

Query: 359 S-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           +    +  T+A ++ +C           +H + +K G+     ++N L++ YS+ G I  
Sbjct: 399 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 458

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-----------AVRPDSI 466
           A++ FG +++ DLVTW ++I  Y F    ++++ +  KM +            +++P+SI
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             + +L +C+    +++G       I + ++  D    + L D+  + G L  +  +   
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577

Query: 527 MPIEPRSDTLGAFIGACKVHGS 548
           +P +    T    I A  +HG+
Sbjct: 578 IP-QKNVITWNVIIMAYGMHGN 598



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 199/401 (49%), Gaps = 30/401 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL-HVYVKCKAFDDMEKLFDEMR 125
           S  L   +    L+ GK+LH++ +K G  ++ S     L  +Y  CK      ++FD M 
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDH--------ITFNSLLRACVQADD 177
            R I  WN +I+G      +   + +  LL  + ++          T   ++ ACV++  
Sbjct: 366 DRKIGLWNAMIAGY-----SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
                 +H F++K G   + FV + L+D+Y + G ++ A R+F ++  RDLV WN M++ 
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 238 YALNCLGDGAIAVFNLMR-LE----------GMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           Y  +   + A+ + + M+ LE           +K +  T  +++ SC  L +   G++IH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              IK +   DV V ++LVDMYAK G +  + +VFD +  KNV++WN +++ +G +G+G+
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENA 404
           EA+ LLR M+     P+EVT  S+ ++C    +  E  ++  Y +K   GV+        
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYAC 659

Query: 405 LINAYSKCGSIAGALQCFGSVKEP--DLVTWTSIIGAYAFH 443
           +++   + G I  A Q    +         W+S++GA   H
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIH 700



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 178/336 (52%), Gaps = 7/336 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF-VSSALVDLYGKCG 211
           M++  ++ D+  F +LL+A     D+E+G+++H+ + K G+G++   V++ LV+LY KCG
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                 +VFD +  R+ V WN ++S        + A+  F  M  E ++   FT  S+V 
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 272 SCGTLGSSK---LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +C  L   +   +G+Q+H   +++  +L+  +  +LV MY K G +  +  +      ++
Sbjct: 208 ACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD 266

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           +V+WNT++    QN    EA++ LR+M+     PDE T++S+L +C  L +    +++HA
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 389 YAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           YA+KNG +     + +AL++ Y  C  +    + F  + +  +  W ++I  Y+ +   K
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 448 ESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVS 482
           E++ +F  M   A +  +S     V+ AC   G  S
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 8/249 (3%)

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VL 299
           N L +  +   +++ L G+K D + F +L+ +   L   +LG+QIH  V K  + +D V 
Sbjct: 76  NLLREAVLTYVDMIVL-GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT 134

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           VA +LV++Y K G+     +VFD ++ +N VSWN+++           A++  R ML  +
Sbjct: 135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEN 194

Query: 360 FCPDEVTLASILSSCGSLSIS---CETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSI 415
             P   TL S++++C +L +       +QVHAY ++ G + +F  I N L+  Y K G +
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKL 252

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A +    GS    DLVTW +++ +   +    E++E   +M+   V PD      VL AC
Sbjct: 253 ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPAC 312

Query: 476 SHGGLVSEG 484
           SH  ++  G
Sbjct: 313 SHLEMLRTG 321



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 164/332 (49%), Gaps = 28/332 (8%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G   + + +H  ++K GL     +QN ++ +Y +    D   ++F +M  R++VTWNT+I
Sbjct: 419 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 478

Query: 137 SGII----------------NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +G +                N    V+    R+   +++ + IT  ++L +C     +  
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRV---SLKPNSITLMTILPSCAALSALAK 535

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G+ +H++ +K     +  V SALVD+Y KCG ++ +R+VFD++  ++++ WNV++  Y +
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +  G  AI +  +M ++G+K +  TF S+  +C   G    G +I   V+K  + ++   
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSS 654

Query: 301 --ATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRD-- 354
                +VD+  + G I +A ++ + M        +W+++ +G  +  +  E  ++     
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL-LGASRIHNNLEIGEIAAQNL 713

Query: 355 -MLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
             L+ +     V LA+I SS G    + E R+
Sbjct: 714 IQLEPNVASHYVLLANIYSSAGLWDKATEVRR 745



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L +GK++H++ +K  L   +++ + ++ +Y KC       K+FD++  +N++TWN
Sbjct: 528 AALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWN 587

Query: 134 TLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I   G+   G       R M++  V+ + +TF S+  AC  +  ++ G R+  +++K 
Sbjct: 588 VIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKP 646

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV---LWNVMVSCYAL-NCLGD 245
            +G+       + +VDL G+ G +++A ++ + ++ RD      W+ ++    + N L  
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN-MMPRDFNKAGAWSSLLGASRIHNNLEI 705

Query: 246 GAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
           G IA  NL++LE  +   Y   +++ +S G
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAG 735


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 319/573 (55%), Gaps = 5/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  ++       L+ GK +H+ I+  G    + +   +L++Y K  + +D   +F+ M 
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT 229

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V+WN +ISG  + G ++  +  F RM       +  T  S+ +A  +  D+ +G+ 
Sbjct: 230 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 289

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYALN 241
           + +   ++G   N  V +AL+D+Y KCG + DAR VFD   + C     WN M+S Y+ +
Sbjct: 290 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQS 349

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL-V 300
                A+ ++  M   G+  D +T+ S+ N+     S + GR +HG+V+K   DL V+ V
Sbjct: 350 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 409

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             ++ D Y+K G ++D  +VFD M  +++VSW T+V  + Q+  G EA+     M +  F
Sbjct: 410 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 469

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P++ T +S+L SC SL      RQVH    K G+     IE+ALI+ Y+KCGSI  A +
Sbjct: 470 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 529

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +  PD+V+WT+II  YA HGL ++++++F +M    ++ +++  L VL ACSHGG+
Sbjct: 530 VFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGM 589

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EGL YF  M   Y ++P+ EHY C+ DLLGRVG L +A + +  MP+EP        +
Sbjct: 590 VEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLL 649

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           G C+VHG++ L + AA K+L + P     Y L+SN Y     + D   LR +M+D    K
Sbjct: 650 GGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKK 709

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PG SWI + G +H F S D+ HPQ   +Y  L
Sbjct: 710 EPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKL 742



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 236/472 (50%), Gaps = 13/472 (2%)

Query: 18  PLSYLTPALYQNQTTTI-----TNAQKHDRSVLSSQLRNSGTIHESTHSAH-SFYSQALK 71
           PL  L  A+  N+T ++     +   K  + V+      S  I E+            L+
Sbjct: 13  PLFELPTAVSNNRTGSLAVSVPSQTAKKSKIVVGRNRPESIGISETYQQTQVQDLIDVLR 72

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNK--LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
             A+ G +++ K +H  ++K    +K  + L N   HVY KC  F     +FDEM  RN+
Sbjct: 73  DCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNV 132

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            +W  +I G    G   +   +F  ML   +  D   +++++++C+  D +E+G+ +H+ 
Sbjct: 133 FSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQ 192

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I+  GF  + FVS++L+++Y K G +ED+  VF+ +   + V WN M+S    N L   A
Sbjct: 193 IVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEA 252

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             +F  M+      + +T  S+  + G L    +G+++     +   + +VLV T+L+DM
Sbjct: 253 FDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDM 312

Query: 308 YAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           Y+K G++ DA  VFD   +       WN M+ G+ Q+G  +EA++L   M Q     D  
Sbjct: 313 YSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 372

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGS 424
           T  S+ ++  +       R VH   +K G+    +S+ NA+ +AYSKCG +    + F  
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           ++E D+V+WT+++ AY+   L +E++  F  M      P+   F  VL +C+
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCA 484


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 320/577 (55%), Gaps = 2/577 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + A+   +  GFL+ G+Q+H +  +       S+ N ++ +Y KC       KLFD M  
Sbjct: 225 ASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEY 284

Query: 127 RNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W T+ISG +    N      F  M     + D     S+L +C     I  GR++
Sbjct: 285 RNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQI 344

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++K     + +V +AL+D+Y KC  + +AR VFD +   D + +N M+  Y+ N   
Sbjct: 345 HAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDL 404

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  MR   ++    TF SL+    +  + +L +QIHGL+IK    LD+  A++L
Sbjct: 405 AEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASAL 464

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+Y+K   ++DA  VF+ +  K++V WN+M+ G  QN  G EA+KL   +L     P+E
Sbjct: 465 IDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNE 524

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T  ++++   +L+     +Q HA+ IK GV     + NALI+ Y+KCG I      F S
Sbjct: 525 FTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFES 584

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               D++ W S+I  YA HG ++E+++VF  M    V P+ + F+ VLSAC+H G V EG
Sbjct: 585 TCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEG 644

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L +FN M S+Y I P  EHY  + +L GR G L  A + +  MPI+P +    + + AC 
Sbjct: 645 LNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACH 704

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           + G+  + ++AAE  L  +P+    Y L+SN+YAS+  W DV  LR+ M  +   K  GC
Sbjct: 705 LFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGC 764

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           SWIE+  E+HTF+   R HP+A  +Y++L  +  L++
Sbjct: 765 SWIEVTKEVHTFIVRGREHPEAELIYSVLDELTSLIK 801



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 231/448 (51%), Gaps = 5/448 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI-- 139
           G+Q+H   +KL L   + +   ++++Y K    D+   +F  + VR  VTWNT+I+G   
Sbjct: 139 GEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQ 198

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           I CGG     F RM ++ VR D     S + AC     +E GR++H +  +     +  V
Sbjct: 199 IGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSV 258

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            + L+DLY KC  +  AR++FD +  R+LV W  M+S Y  N     AI +F  M   G 
Sbjct: 259 INVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGW 318

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D F  +S++NSCG+L +   GRQIH  VIK   + D  V  +L+DMYAK  ++ +A  
Sbjct: 319 QPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARA 378

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS-SCGSLS 378
           VFD +   + +S+N M+ G+ +N D  EAV + + M   S  P  +T  S+L  S   L+
Sbjct: 379 VFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLA 438

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           I   ++Q+H   IK+G    L   +ALI+ YSKC  +  A   F  +   D+V W S+I 
Sbjct: 439 IEL-SKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIF 497

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            +A +   +E+I++F ++L   + P+   F+ +++  S    +  G + F+  I    + 
Sbjct: 498 GHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHG-QQFHAWIIKAGVD 556

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            D      L D+  + G + E   L  S
Sbjct: 557 NDPHVSNALIDMYAKCGFIKEGRMLFES 584



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 218/397 (54%), Gaps = 7/397 (1%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-----GI 139
           +H+     G  + L L N +L  Y       D   LFD M  RN+V+W ++IS     G 
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            +C  ++   F++   +    +     S+LRAC Q+  + +G ++H   +K+    N +V
Sbjct: 100 DDCAISLFVAFQKASCEVP--NEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYV 157

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL++LY K G +++A  VF  +  R  V WN +++ YA    G  A+ +F+ M +EG+
Sbjct: 158 GTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGV 217

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D F  +S V++C  LG  + GRQIHG   + + + D  V   L+D+Y K   +  A +
Sbjct: 218 RPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARK 277

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  +N+VSW TM+ G+ QN    EA+ +  +M Q  + PD     SIL+SCGSL+ 
Sbjct: 278 LFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAA 337

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + RQ+HA+ IK  ++A   ++NALI+ Y+KC  +  A   F ++ E D +++ ++I  
Sbjct: 338 IWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEG 397

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           Y+ +    E++ +F++M   ++RP  + F+ +L   S
Sbjct: 398 YSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSS 434



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 174/334 (52%), Gaps = 5/334 (1%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + F+++ L+  Y   G + DAR +FD +  R+LV W  ++S Y  +   D AI++F   +
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 256 LEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
               +  + F  +S++ +C    +  LG Q+HG+ +K   D +V V T+L+++YAK G +
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCM 171

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D+A  VF  +  +  V+WNT++ G+ Q G G  A++L   M      PD   LAS +S+C
Sbjct: 172 DEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSAC 231

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            +L      RQ+H YA ++  +   S+ N LI+ Y KC  ++ A + F  ++  +LV+WT
Sbjct: 232 SALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWT 291

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++I  Y  +  + E+I +F  M     +PD  A   +L++C     + +G R  +  +  
Sbjct: 292 TMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQG-RQIHAHVIK 350

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEA---YDLLA 525
             +  D      L D+  +   L EA   +D LA
Sbjct: 351 ADLEADEYVKNALIDMYAKCEHLTEARAVFDALA 384


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 318/574 (55%), Gaps = 31/574 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL+V         GKQ+HS ++  G      + N ++ +Y KC   +   K+FDEM 
Sbjct: 178 FASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG 237

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLL--DNVRLDHITFNSLLRACVQADDIEVG 181
            RN VTWN++IS     G   +    F RM    D ++ D  TF +LL  C    +   G
Sbjct: 238 ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQG 297

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R++H+ +++     N  V + LV +Y +CG +  A+ +F+ +  R+   WN M+  Y  N
Sbjct: 298 RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 357

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                A+ +F  M+L G+K D F+ SS+++SC +L  S+ GR++H  +++ + + + ++ 
Sbjct: 358 GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 417

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAK--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
             LVDMYAK G++D A +V+D    K  N   WN+++ G+   G  +E+     +ML+  
Sbjct: 418 VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESD 477

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D +T+ +I++                          L +E AL++ YSKCG+I  A 
Sbjct: 478 IEYDVLTMVTIVN-------------------------LLVLETALVDMYSKCGAITKAR 512

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F ++   ++V+W ++I  Y+ HG SKE++ ++E+M    + P+ + FL +LSACSH G
Sbjct: 513 TVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTG 572

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EGLR F  M  DY+I   +EHYTC+ DLLGR G L +A + +  MPIEP   T GA 
Sbjct: 573 LVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGAL 632

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +GAC+VH  + + + AA++L EL+P  P  Y ++SN+YA+   W +V  +R+MM+     
Sbjct: 633 LGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVK 692

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K PG SWIEI  EI  F +  ++HP+   +Y  L
Sbjct: 693 KDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNL 726



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 212/408 (51%), Gaps = 8/408 (1%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED---A 216
           ++ + ++SL++ C+ ++  + G+ +H+ ++  G+  + ++ + ++ LY + G ++D   A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R++F+E+  R+L  WN M+  YA       A  +F+ M   G+  D FTF+S +  CG L
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 188

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            S   G+Q+H  +I   F  D  V  +L+DMYAK  + +   +VFD M  +N V+WN+++
Sbjct: 189 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSII 248

Query: 337 VGFGQNGDGREAVKLLRDMLQGS--FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
               Q G   +A+ L   M +      PD+ T  ++L+ C +     + RQ+HA+ I+  
Sbjct: 249 SAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN 308

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +   + +E  L++ YS+CG +  A + F  + E +  +W S+I  Y  +G ++E++ +F+
Sbjct: 309 ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK 368

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +M  + ++PD  +   +LS+C       +G    N ++ +  +  +      L D+  + 
Sbjct: 369 QMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNT-MEEEGILQVVLVDMYAKC 427

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           G +  A+ +      + R+  L   I A   + + GL K +    LE+
Sbjct: 428 GSMDYAWKVYDQTIKKDRNTALWNSILAG--YANKGLKKESFNHFLEM 473


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 318/570 (55%), Gaps = 2/570 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LKV      L+ GK++H  ++K G    L     + ++Y KC+  ++  K+FD M 
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNT+++G    G         + M  +N++   IT  S+L A      I VG+ 
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H + ++ GF     +S+ALVD+Y KCG +E AR++FD +L R++V WN M+  Y  N  
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  M  EG+K    +    +++C  LG  + GR IH L ++   D +V V  S
Sbjct: 318 PKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNS 377

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY K   +D A  +F  + ++ +VSWN M++GF QNG   +A+     M   +  PD
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPD 437

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  S++++   LSI+   + +H   +++ +   + +  AL++ Y+KCG+I  A   F 
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E  + TW ++I  Y  HG  K ++E+FE+M    ++P+ + FL V+SACSH GLV  
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEA 557

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL+ F +M  +Y I    +HY  + DLLGR G L EA+D +  MP++P  +  GA +GAC
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H ++  A+ AAE+L EL P     + L++N+Y +   W  V ++R  M      K PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           CS +EI  E+H+F S   +HP +  +YA L
Sbjct: 678 CSMVEIKNEVHSFFSGSTAHPDSKKIYAFL 707



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 272/524 (51%), Gaps = 11/524 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++ +Q+   + K GL  +   Q +++ ++ +  + D+  ++F+ +  +  V ++T++ G
Sbjct: 50  LKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKG 109

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                       +F RM  D+V      F  LL+ C    ++ VG+ +H  ++K GF L+
Sbjct: 110 FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F  + L ++Y KC  V +AR+VFD +  RDLV WN +V+ Y+ N +   A+ +   M  
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E +K  + T  S++ +   L    +G++IHG  ++  FD  V ++T+LVDMYAK G+++ 
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLET 289

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++FDGM  +NVVSWN+M+  + QN + +EA+ + + ML     P +V++   L +C  
Sbjct: 290 ARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACAD 349

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      R +H  +++ G+   +S+ N+LI+ Y KC  +  A   FG ++   LV+W ++
Sbjct: 350 LGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM 409

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  +A +G   +++  F +M S  V+PD+  ++ V++A +   +     ++ + ++    
Sbjct: 410 ILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSC 468

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           +  +    T L D+  + G ++ A  L+  M  E    T  A I     +G+ G  K A 
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDG---YGTHGFGKAAL 524

Query: 557 EKLLELEPS--KPVNYALVSNVYASERCWFDVARLR--KMMRDN 596
           E   E++    KP     +S + A        A L+   MM++N
Sbjct: 525 ELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKEN 568


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 328/556 (58%), Gaps = 6/556 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           G+++H  ++K+GL       N ++ +Y K    +    +F ++   ++V+WN +I+G + 
Sbjct: 202 GRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVL 261

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            +C          M     R +  T +S L+AC      E+GR+LHS ++K+    + F 
Sbjct: 262 HDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFA 321

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLE 257
           +  LVD+Y KC  ++DARR +D +  +D++ WN ++S Y+  C GD   A+++F+ M  E
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYS-QC-GDHLDAVSLFSKMFSE 379

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  +  T S+++ S  +L + K+ +QIH + IK     D  V  SL+D Y K  +ID+A
Sbjct: 380 DIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEA 439

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            ++F+  T +++V++ +M+  + Q GDG EA+KL   M      PD    +S+L++C +L
Sbjct: 440 SKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANL 499

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S   + +Q+H +AIK G    +   N+L+N Y+KCGSI  A + F  +    +V+W+++I
Sbjct: 500 SAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMI 559

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
           G YA HG  KE++ +F +ML   V P+ I  + VL AC+H GLV+EG +YF  M   + I
Sbjct: 560 GGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGI 619

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLLGR G L EA +L+ S+P E      GA +GA ++H +I L + AA+
Sbjct: 620 KPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAK 679

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            L +LEP K   + L++N+YAS   W +VA++RK M+D+   K PG SWIEI  +++TF+
Sbjct: 680 MLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFI 739

Query: 618 SSDRSHPQAVHMYAML 633
             DRSH ++  +YA L
Sbjct: 740 VGDRSHSRSDEIYAKL 755



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 218/395 (55%), Gaps = 2/395 (0%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           +LH+H++K G     SL+N ++ +Y KC+ F    KL DE    ++V+W++L+SG +  G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                   F  M L  V+ +  TF S+L+AC    D+ +GR++H   +  GF  + FV++
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            LV +Y KCG ++D+RR+F  ++ R++V WN + SCY  + L   A+ +F  M   G+  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           + F+ S ++N+C  L    LGR+IHGL++K   DLD   A +LVDMY+K G I+ A  VF
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
             +   +VVSWN ++ G   +     A+ LL +M      P+  TL+S L +C ++    
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQ+H+  IK    + L     L++ YSKC  +  A + + S+ + D++ W ++I  Y+
Sbjct: 302 LGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYS 361

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             G   +++ +F KM S  +  +      VL + +
Sbjct: 362 QCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA 396



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 248/471 (52%), Gaps = 4/471 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+++H   +  G  +   + N ++ +Y KC   DD  +LF  +  RN+V+WN L S 
Sbjct: 98  LNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSC 157

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +     G     F+ M+   +  +  + + +L AC    + ++GR++H  +LK+G  L+
Sbjct: 158 YVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLD 217

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F ++ALVD+Y K G +E A  VF ++   D+V WN +++   L+   D A+ + + M+ 
Sbjct: 218 QFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKG 277

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G + + FT SS + +C  +G  +LGRQ+H  +IK     D+  A  LVDMY+K   +DD
Sbjct: 278 SGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDD 337

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A R +D M  K++++WN ++ G+ Q GD  +AV L   M       ++ TL+++L S  S
Sbjct: 338 ARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVAS 397

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      +Q+H  +IK+G+ +   + N+L++ Y KC  I  A + F      DLV +TS+
Sbjct: 398 LQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSM 457

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I AY+ +G  +E+++++ +M    ++PD      +L+AC++     +G +  ++    + 
Sbjct: 458 ITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG-KQLHVHAIKFG 516

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            + D      L ++  + G + +A    + +P      +  A IG    HG
Sbjct: 517 FMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIV-SWSAMIGGYAQHG 566



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 183/347 (52%), Gaps = 3/347 (0%)

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            LH+ ++K GF  +  + + LV LY KC     AR++ DE    D+V W+ ++S Y  N 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ VFN M L G+K + FTF S++ +C       +GR++HG+ +   F+ D  VA 
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LV MYAK G +DD+ R+F G+  +NVVSWN +   + Q+    EAV L ++M++    P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E +++ IL++C  L      R++H   +K G+       NAL++ YSK G I GA+  F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +  PD+V+W +II     H  +  ++ + ++M     RP+       L AC+  G   
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 483 EGLRYFNLMIS-DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            G +  + +I  D H   D      L D+  +  ++ +A     SMP
Sbjct: 302 LGRQLHSSLIKMDAH--SDLFAAVGLVDMYSKCEMMDDARRAYDSMP 346


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 319/573 (55%), Gaps = 5/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  ++       L+ GK +H+ I+  G    + +   +L++Y K  + +D   +F+ M 
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT 283

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V+WN +ISG  + G ++  +  F RM       +  T  S+ +A  +  D+ +G+ 
Sbjct: 284 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 343

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYALN 241
           + +   ++G   N  V +AL+D+Y KCG + DAR VFD   + C     WN M+S Y+ +
Sbjct: 344 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQS 403

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL-V 300
                A+ ++  M   G+  D +T+ S+ N+     S + GR +HG+V+K   DL V+ V
Sbjct: 404 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 463

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             ++ D Y+K G ++D  +VFD M  +++VSW T+V  + Q+  G EA+     M +  F
Sbjct: 464 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 523

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P++ T +S+L SC SL      RQVH    K G+     IE+ALI+ Y+KCGSI  A +
Sbjct: 524 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 583

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +  PD+V+WT+II  YA HGL ++++++F +M    ++ +++  L VL ACSHGG+
Sbjct: 584 VFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGM 643

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EGL YF  M   Y ++P+ EHY C+ DLLGRVG L +A + +  MP+EP        +
Sbjct: 644 VEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLL 703

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           G C+VHG++ L + AA K+L + P     Y L+SN Y     + D   LR +M+D    K
Sbjct: 704 GGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKK 763

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PG SWI + G +H F S D+ HPQ   +Y  L
Sbjct: 764 EPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKL 796



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 242/487 (49%), Gaps = 13/487 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNK--LSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           L+  A+ G +++ K +H  ++K    +K  + L N   HVY KC  F     +FDEM  R
Sbjct: 125 LRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQR 184

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+ +W  +I G    G   +   +F  ML   +  D   +++++++C+  D +E+G+ +H
Sbjct: 185 NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVH 244

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + I+  GF  + FVS++L+++Y K G +ED+  VF+ +   + V WN M+S    N L  
Sbjct: 245 AQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHL 304

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A  +F  M+      + +T  S+  + G L    +G+++     +   + +VLV T+L+
Sbjct: 305 EAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALI 364

Query: 306 DMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           DMY+K G++ DA  VFD   +       WN M+ G+ Q+G  +EA++L   M Q     D
Sbjct: 365 DMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSD 424

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCF 422
             T  S+ ++  +       R VH   +K G+    +S+ NA+ +AYSKCG +    + F
Sbjct: 425 LYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVF 484

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             ++E D+V+WT+++ AY+   L +E++  F  M      P+   F  VL +C+    + 
Sbjct: 485 DRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLE 544

Query: 483 EGLRYFNLMISDYHILPDSEH--YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
            G +   L+        D+E    + L D+  + G + EA  +   +   P   +  A I
Sbjct: 545 YGRQVHGLLCKAG---LDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAII 600

Query: 541 GACKVHG 547
                HG
Sbjct: 601 SGYAQHG 607



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 16/317 (5%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFG----LNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           +LR C +   I   + +H  +LK  F     +  F  +A V  Y KC     A  VFDE+
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVFDEM 181

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R++  W VM+     + L       F  M   G+  D F +S+++ SC  L S +LG+
Sbjct: 182 PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGK 241

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            +H  ++ + F   + V+TSL++MYAK G+I+D+  VF+ MT  N VSWN M+ G   NG
Sbjct: 242 MVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNG 301

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA  L   M  G+  P+  TL S+  + G L      ++V   A + G++  + +  
Sbjct: 302 LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGT 361

Query: 404 ALINAYSKCGSIAGALQCFGS------VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           ALI+ YSKCGS+  A   F +      V  P    W ++I  Y+  G S+E++E++ +M 
Sbjct: 362 ALIDMYSKCGSLHDARSVFDTNFINCGVNTP----WNAMISGYSQSGCSQEALELYVQMC 417

Query: 458 SHAVRPDSIAFLEVLSA 474
            + +  D   +  V +A
Sbjct: 418 QNGITSDLYTYCSVFNA 434


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 338/605 (55%), Gaps = 19/605 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H++ ++ G  N   + N ++ +Y K       + L      R++VTWNT++S 
Sbjct: 131 LMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS 189

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGL 195
           +           Y R M+L+ V  D  T +S+L AC   + +  G+ LH++ LK G    
Sbjct: 190 LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 249

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLM 254
           N FV SALVD+Y  C  V   RRVFD +  R + LWN M++ Y+ N     A+ +F  + 
Sbjct: 250 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 309

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  +  T + +V +C   G+      IHG V+K+  D D  V  +L+DMY++ G I
Sbjct: 310 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 369

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-----------QGSFCPD 363
           D A R+F  M  +++V+WNTM+ G+  +    +A+ LL  M            + S  P+
Sbjct: 370 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 429

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +TL +IL SC +LS   + +++HAYAIKN +   +++ +AL++ Y+KCG +  + + F 
Sbjct: 430 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 489

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + +++TW  II AY  HG  +E+I++   M+   V+P+ + F+ V +ACSH G+V E
Sbjct: 490 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 549

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE-PRSDTLGAFIGA 542
           GLR F +M  DY + P S+HY C+ DLLGR G + EAY L+  MP +  ++    + +GA
Sbjct: 550 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 609

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
            ++H ++ + + AA+ L++LEP+   +Y L++N+Y+S   W     +R+ M++    K P
Sbjct: 610 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 669

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV--SGHCNVLDKEMDECT 660
           GCSWIE   E+H FV+ D SHPQ+  +   L T++  M +        C + + E DE  
Sbjct: 670 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 729

Query: 661 LWLPG 665
           + L G
Sbjct: 730 ILLCG 734



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 145/533 (27%), Positives = 267/533 (50%), Gaps = 24/533 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           +   LK  A    ++ GKQ+H+H+ K G   + +++ N ++++Y KC  F  + K+FD +
Sbjct: 13  FPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI 72

Query: 125 RVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ---ADDIE 179
             RN V+WN+LIS +            FR ML +NV     T  S++ AC      + + 
Sbjct: 73  SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM 132

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G+++H++ L+ G  LN F+ + LV +YGK G +  ++ +      RDLV WN ++S   
Sbjct: 133 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 191

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDV 298
            N     A+     M LEG++ D FT SS++ +C  L   + G+++H   +K  S D + 
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V ++LVDMY     +    RVFDGM  + +  WN M+ G+ QN   +EA+ L   M + 
Sbjct: 252 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 311

Query: 359 S-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           +    +  T+A ++ +C           +H + +K G+     ++N L++ YS+ G I  
Sbjct: 312 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 371

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-----------AVRPDSI 466
           A++ FG +++ DLVTW ++I  Y F    ++++ +  KM +            +++P+SI
Sbjct: 372 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 431

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             + +L +C+    +++G       I + ++  D    + L D+  + G L  +  +   
Sbjct: 432 TLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 490

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           +P +    T    I A  +HG+ G       +++ ++  KP     +S V+A+
Sbjct: 491 IP-QKNVITWNVIIMAYGMHGN-GQEAIDLLRMMMVQGVKPNEVTFIS-VFAA 540



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 199/401 (49%), Gaps = 30/401 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL-HVYVKCKAFDDMEKLFDEMR 125
           S  L   +    L+ GK+LH++ +K G  ++ S     L  +Y  CK      ++FD M 
Sbjct: 219 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 278

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDH--------ITFNSLLRACVQADD 177
            R I  WN +I+G      +   + +  LL  + ++          T   ++ ACV++  
Sbjct: 279 DRKIGLWNAMIAGY-----SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 333

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
                 +H F++K G   + FV + L+D+Y + G ++ A R+F ++  RDLV WN M++ 
Sbjct: 334 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393

Query: 238 YALNCLGDGAIAVFNLMR-LE----------GMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           Y  +   + A+ + + M+ LE           +K +  T  +++ SC  L +   G++IH
Sbjct: 394 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 453

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              IK +   DV V ++LVDMYAK G +  + +VFD +  KNV++WN +++ +G +G+G+
Sbjct: 454 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 513

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENA 404
           EA+ LLR M+     P+EVT  S+ ++C    +  E  ++  Y +K   GV+        
Sbjct: 514 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYAC 572

Query: 405 LINAYSKCGSIAGALQCFGSVKEP--DLVTWTSIIGAYAFH 443
           +++   + G I  A Q    +         W+S++GA   H
Sbjct: 573 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIH 613



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 178/336 (52%), Gaps = 7/336 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF-VSSALVDLYGKCG 211
           M++  ++ D+  F +LL+A     D+E+G+++H+ + K G+G++   V++ LV+LY KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                 +VFD +  R+ V WN ++S        + A+  F  M  E ++   FT  S+V 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 272 SCGTLGSSK---LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +C  L   +   +G+Q+H   +++  +L+  +  +LV MY K G +  +  +      ++
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD 179

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           +V+WNT++    QN    EA++ LR+M+     PDE T++S+L +C  L +    +++HA
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 239

Query: 389 YAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           YA+KNG +     + +AL++ Y  C  +    + F  + +  +  W ++I  Y+ +   K
Sbjct: 240 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 299

Query: 448 ESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVS 482
           E++ +F  M   A +  +S     V+ AC   G  S
Sbjct: 300 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 335



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 163/332 (49%), Gaps = 28/332 (8%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G   + + +H  ++K GL     +QN ++ +Y +    D   ++F +M  R++VTWNT+I
Sbjct: 332 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 391

Query: 137 SGII----------------NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +G +                N    V+    R+ L   + + IT  ++L +C     +  
Sbjct: 392 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL---KPNSITLMTILPSCAALSALAK 448

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G+ +H++ +K     +  V SALVD+Y KCG ++ +R+VFD++  ++++ WNV++  Y +
Sbjct: 449 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 508

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +  G  AI +  +M ++G+K +  TF S+  +C   G    G +I   V+K  + ++   
Sbjct: 509 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSS 567

Query: 301 A--TSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRD-- 354
                +VD+  + G I +A ++ + M        +W+++ +G  +  +  E  ++     
Sbjct: 568 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL-LGASRIHNNLEIGEIAAQNL 626

Query: 355 -MLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
             L+ +     V LA+I SS G    + E R+
Sbjct: 627 IQLEPNVASHYVLLANIYSSAGLWDKATEVRR 658



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L +GK++H++ +K  L   +++ + ++ +Y KC       K+FD++  +N++TWN
Sbjct: 441 AALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWN 500

Query: 134 TLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I   G+   G       R M++  V+ + +TF S+  AC  +  ++ G R+  +++K 
Sbjct: 501 VIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKP 559

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV---LWNVMVSCYAL-NCLGD 245
            +G+       + +VDL G+ G +++A ++ + ++ RD      W+ ++    + N L  
Sbjct: 560 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN-MMPRDFNKAGAWSSLLGASRIHNNLEI 618

Query: 246 GAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
           G IA  NL++LE  +   Y   +++ +S G
Sbjct: 619 GEIAAQNLIQLEPNVASHYVLLANIYSSAG 648


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 321/569 (56%), Gaps = 4/569 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +K       +  G+ +H  I  +G    + + + ++  Y +     D   LFD M 
Sbjct: 150 FPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V WN +++G +  G   N T  F  M       + +TF  +L  C     I  G +
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ 269

Query: 184 LHSFILKVGFGLNCFVSS--ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           LH  ++  G  ++  V++  AL+D+Y KC  VE AR++FD+    D+V+   M+S Y LN
Sbjct: 270 LHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLN 329

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            + + A+ +F  +  E M+ +  T +S++ +C  L +  LG+++HG ++K        V 
Sbjct: 330 GMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG 389

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           ++++DMYAK G +D A + F G++ K+ V WN+M+    QNG   EA+ L R M      
Sbjct: 390 SAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTK 449

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            D V++++ LS+C +L      +++HA+ ++   ++ L  E+ALI+ YSKCG++  A + 
Sbjct: 450 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 509

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F +++E + V+W SII AY  HG  K+S+ +F  ML   ++PD + FL ++SAC H G V
Sbjct: 510 FDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 569

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG+ YF  M  +  I+   EHY C+ DL GR G L EA+ ++ SMP  P +   G  +G
Sbjct: 570 DEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLG 629

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC++HG++ LA+ A+  L +L+P     Y L+SNV+A+   W  V ++R +M++    KV
Sbjct: 630 ACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKV 689

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           PGCSWI++    H FV++DRSHPQ+  +Y
Sbjct: 690 PGCSWIDVNNTTHMFVAADRSHPQSSQIY 718



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 218/403 (54%), Gaps = 4/403 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG+Q H+ ++  G+     L  ++L +YV C AF D + +F ++R+     WN +I G
Sbjct: 62  LSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRG 121

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G       ++ +ML      D  TF  +++AC   + + +GR +H  I  +GF L+
Sbjct: 122 FTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELD 181

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+L+  Y + G + DAR +FD +  +D VLWNVM++ Y  N   D A  VF  MR 
Sbjct: 182 VFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS--LVDMYAKNGNI 314
                +  TF+ +++ C +      G Q+HGLV+    ++D  VA +  L+D+Y K  ++
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDV 301

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A ++FD  T  ++V    M+ G+  NG    A+++ R +LQ     + VTLAS+L +C
Sbjct: 302 EMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC 361

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L+     +++H + +KNG      + +A+++ Y+KCG +  A Q F  + + D V W 
Sbjct: 362 AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWN 421

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           S+I + + +G  +E+I++F +M     + D ++    LSAC++
Sbjct: 422 SMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACAN 464



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 2/312 (0%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L+ C     +  GR+ H+ +L  G G N  + + L+ +Y  CG   DA+ +F ++   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
               WN M+  + +    D A+  +  M   G   D +TF  ++ +CG L S  LGR +H
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +    F+LDV V +SL+  Y++NG I DA  +FD M +K+ V WN M+ G+ +NGD  
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--A 404
            A  +  +M +    P+ VT A +LS C S  +     Q+H   + +G++    + N  A
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFA 290

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y KC  +  A + F      D+V  T++I  Y  +G++  ++E+F  +L   +R +
Sbjct: 291 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRAN 350

Query: 465 SIAFLEVLSACS 476
           S+    VL AC+
Sbjct: 351 SVTLASVLPACA 362



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S++ +C        GRQ H  ++      + ++ T L+ MY   G   DA  +F  +   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
               WN M+ GF   G    A+     ML     PD+ T   ++ +CG L+     R VH
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
                 G +  + + ++LI  YS+ G I  A   F  +   D V W  ++  Y  +G   
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +  VF +M      P+S+ F  VLS C+   +++ G +   L++S
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L SIL +C   S   + RQ HA  + NG+     +   L+  Y  CG+   A   F  ++
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
                 W  +I  +   G    ++  + KML     PD   F  V+ AC  GGL S  L
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC--GGLNSVAL 165


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 311/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G   +GKQLHS+++K+G+ + L ++  +L +YVKC   +   + F      N+
Sbjct: 321 LSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENV 380

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++      G     Y  F +M ++ +  +  T+ S+LR C     +++G ++H+ 
Sbjct: 381 VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQ 440

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K GF  N +V S L+D+Y K G ++ AR +   +   D+V W  M++ Y  + L   A
Sbjct: 441 VIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEA 500

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M  +G++ D   FSS +++C  + +   G+QIH       +  D+ +  +LV +
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSL 560

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G   DA   F+ + AK+ +SWN ++ GF Q+G   EA+++   M Q     +  T 
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  + +   + +Q+HA  IK G  +     N LI  YSKCGSI  A + F  + E
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE 680

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            ++V+W ++I  Y+ HG   E++ +FE+M    + P+ + F+ VLSACSH GLV+EGL Y
Sbjct: 681 KNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSY 740

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  ++ ++P  EHY C+ DLLGR  LL  A + +  MPIEP +      + AC VH 
Sbjct: 741 FRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHK 800

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + ++AA  LLELEP     Y L+SN+YA    W    R R+MM+D    K PG SWI
Sbjct: 801 NIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWI 860

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   IH F   DR HP A  +Y  +
Sbjct: 861 EVKNSIHAFFVGDRLHPLAEQIYEYI 886



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 253/485 (52%), Gaps = 6/485 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L    K    + G+QLH  I+K GL ++  + N ++ +Y +       E++F +M 
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ +++N+LISG+   G        F +M LD ++ D +T  SLL AC        G++
Sbjct: 276 RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNC 242
           LHS+++K+G   +  +  +L+DLY KC  +E A   F      ++VLWNVM+  Y  L  
Sbjct: 336 LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGN 395

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L + +  +F  M++EG+  + +T+ S++ +C +LG+  LG QIH  VIK  F  +V V +
Sbjct: 396 LSE-SYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCS 454

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            L+DMYAK+G +D A  +   +  ++VVSW  M+ G+ Q+    EA+KL ++M       
Sbjct: 455 VLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRS 514

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D +  +S +S+C  +    + +Q+HA +  +G    LSI NAL++ Y++CG    A   F
Sbjct: 515 DNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAF 574

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   D ++W ++I  +A  G  +E+++VF +M    V  +   F   +SA ++   + 
Sbjct: 575 EKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIK 634

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +G +   +MI   +   ++E    L  L  + G + +A      MP E    +  A I  
Sbjct: 635 QGKQIHAMMIKTGYD-SETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITG 692

Query: 543 CKVHG 547
              HG
Sbjct: 693 YSQHG 697



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 220/411 (53%), Gaps = 3/411 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L   K+LH+ I K G   +  L ++++ +Y+     D+  KLFD++   N+  WN +I
Sbjct: 24  GSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVI 83

Query: 137 SGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGF 193
           SG++       V   F  M+ +NV  D  TF S+LRAC       +V  ++H+ I+  GF
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGF 143

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
           G +  V + L+DLY K G V+ A+ VF+ +  +D V W  M+S  + N   D AI +F  
Sbjct: 144 GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQ 203

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M    +    + FSS++++C  +   KLG Q+HG ++K     +  V  +LV +Y++ GN
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A ++F  M  ++ +S+N+++ G  Q G    A++L   M      PD VT+AS+LS+
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S+    + +Q+H+Y IK G+ + L IE +L++ Y KC  I  A + F + +  ++V W
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLW 383

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             ++ AY   G   ES  +F +M    + P+   +  +L  C+  G +  G
Sbjct: 384 NVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG 434



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 235/446 (52%), Gaps = 5/446 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            Q  +Q+H+ I+  G  +   + N ++ +Y K    D  + +F+ + +++ V+W  +ISG
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISG 187

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   G        F +M    V      F+S+L AC + +  ++G +LH FI+K G    
Sbjct: 188 LSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE 247

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV +ALV LY + G +  A ++F ++  RD + +N ++S  A     D A+ +F  M+L
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           + MK D  T +SL+++C ++G+   G+Q+H  VIK     D+++  SL+D+Y K  +I+ 
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIET 367

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A   F     +NVV WN M+V +GQ G+  E+  +   M      P++ T  SIL +C S
Sbjct: 368 AHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L       Q+H   IK+G Q  + + + LI+ Y+K G +  A      ++E D+V+WT++
Sbjct: 428 LGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAM 487

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDY 495
           I  Y  H L  E++++F++M +  +R D+I F   +SAC+    +++G + +    IS Y
Sbjct: 488 IAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGY 547

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAY 521
               D      L  L  R G   +AY
Sbjct: 548 S--EDLSIGNALVSLYARCGRAQDAY 571



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 212/430 (49%), Gaps = 34/430 (7%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           +R +  T+  L   C  +  +   ++LH+ I K GF     + S L+D+Y   G V++A 
Sbjct: 6   IRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAI 65

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTL 276
           ++FD++   ++  WN ++S      L    + +F+LM  E +  D  TF+S++ +C G  
Sbjct: 66  KLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGK 125

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
              ++  QIH  +I   F    LV   L+D+Y+KNG++D A  VF+ +  K+ VSW  M+
Sbjct: 126 APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G  QNG   EA+ L   M + +  P     +S+LS+C  + +     Q+H + +K G+ 
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           +   + NAL+  YS+ G++  A Q F  +   D +++ S+I   A  G S  ++++FEKM
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 457 LSHAVRPDSIAFLEVLSACSHGG--------------------LVSEG------LRYFNL 490
               ++PD +    +LSAC+  G                    L+ EG      ++ F++
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDI 365

Query: 491 MIS-DYHILPDSEHYTCLTDLL---GRVGLLVEAYDLLASMPIE---PRSDTLGAFIGAC 543
             + +Y +  ++E+      +L   G++G L E+Y +   M IE   P   T  + +  C
Sbjct: 366 ETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTC 425

Query: 544 KVHGSIGLAK 553
              G++ L +
Sbjct: 426 TSLGALDLGE 435



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 9/235 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A+   A    L QG+Q+H+     G    LS+ N ++ +Y +C    D    F+++ 
Sbjct: 519 FSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID 578

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ ++WN LISG    G        F +M    V  +  TF S + A     +I+ G++
Sbjct: 579 AKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQ 638

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++K G+      S+ L+ LY KCG +EDA+R F E+  +++V WN M++ Y+ +  
Sbjct: 639 IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGY 698

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-------RQIHGLVIK 291
           G  A+++F  M+  G+  ++ TF  ++++C  +G    G        + HGLV K
Sbjct: 699 GSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPK 753



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 6/282 (2%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G++ +  T+  L   C   GS    +++H  + K  FD + ++ + L+D+Y  +G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +D+A ++FD + + NV  WN ++ G        + + L   M+  +  PDE T AS+L +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 374 C-GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C G  +    T Q+HA  I +G  +   + N LI+ YSK G +  A   F  +   D V+
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I   + +G   E+I +F +M   AV P    F  VLSAC+   L   G +    ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 493 SDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASMPIEPR 532
                   SE + C  L  L  R G L+ A  + + M    R
Sbjct: 241 K---WGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDR 279



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 5/197 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  A+  +A    ++QGKQ+H+ ++K G  ++    N ++ +Y KC + +D ++ F EM 
Sbjct: 620 FGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP 679

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
            +N+V+WN +I+G      G      F  M    +  +H+TF  +L AC     +  G  
Sbjct: 680 EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLS 739

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYAL 240
              S   + G          +VDL G+   +  AR   +E+ +  D ++W  ++S C   
Sbjct: 740 YFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVH 799

Query: 241 NCLGDGAIAVFNLMRLE 257
             +  G  A  +L+ LE
Sbjct: 800 KNIEIGEFAARHLLELE 816


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 308/565 (54%), Gaps = 33/565 (5%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD-NV 158
           N +L  Y K     +ME  F+++  R+ VTWN LI G    G  G     +  M+ D + 
Sbjct: 76  NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            L  +T  ++L+       + +G+++H  ++K+GF     V S L+ +Y   G + DA++
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195

Query: 219 VFDEV------------------------------LCRDLVLWNVMVSCYALNCLGDGAI 248
           VF  +                              + +D V W  M+   A N L   AI
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAI 255

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
             F  M+++G+K D + F S++ +CG LG+   G+QIH  +I+ +F   + V ++L+DMY
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K   +  A  VFD M  KNVVSW  MVVG+GQ G   EAVK+  DM +    PD  TL 
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
             +S+C ++S   E  Q H  AI +G+  ++++ N+L+  Y KCG I  + + F  +   
Sbjct: 376 QAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D V+WT+++ AYA  G + E+I++F+KM+ H ++PD +    V+SACS  GLV +G RYF
Sbjct: 436 DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            LM S+Y I+P   HY+C+ DL  R G L EA   +  MP  P +      + AC+  G+
Sbjct: 496 KLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           + + KWAAE L+EL+P  P  Y L+S++YAS+  W  VA+LR+ MR+    K PG SWI+
Sbjct: 556 LEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIK 615

Query: 609 IAGEIHTFVSSDRSHPQAVHMYAML 633
             G++H+F + D S P    +YA L
Sbjct: 616 WKGKLHSFSADDESSPYLDQIYAKL 640



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 197/404 (48%), Gaps = 34/404 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK+S+  G +  GKQ+H  ++KLG  + L + + +L++Y       D +K+F  +  RN 
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205

Query: 130 VTWNTLISGIINCG--------------------------------GNVTPYFRRMLLDN 157
           V +N+L+ G++ CG                                      FR M +  
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           +++D   F S+L AC     I  G+++H+ I++  F  + +V SAL+D+Y KC  +  A+
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK 325

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            VFD +  +++V W  MV  Y      + A+ +F  M+  G+  D++T    +++C  + 
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVS 385

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           S + G Q HG  I       V V+ SLV +Y K G+IDD+ R+F+ M  ++ VSW  MV 
Sbjct: 386 SLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVS 445

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS-ISCETRQVHAYAIKNGVQ 396
            + Q G   E ++L   M+Q    PD VTL  ++S+C     +    R       + G+ 
Sbjct: 446 AYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIV 505

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
             +   + +I+ +S+ G +  A++    +   PD + WT+++ A
Sbjct: 506 PSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 198/447 (44%), Gaps = 68/447 (15%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +N+++ A          RR+   I +     N F  + L+  Y K G + +    F+++ 
Sbjct: 44  YNNIVHAYALMKSSTYARRVFDRIPQP----NLFSWNNLLLAYSKAGLISEMESTFEKLP 99

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            RD V WNV++  Y+L+ L   A+  +N +MR         T  +++    + G   LG+
Sbjct: 100 DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGK 159

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV-------------- 329
           QIHG VIK  F+  +LV + L+ MYA  G I DA +VF G+  +N               
Sbjct: 160 QIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACG 219

Query: 330 ----------------VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
                           VSW  M+ G  QNG  +EA++  R+M       D+    S+L +
Sbjct: 220 MIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPA 279

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           CG L    E +Q+HA  I+   Q  + + +ALI+ Y KC  +  A   F  +K+ ++V+W
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVS 482
           T+++  Y   G ++E++++F  M    + PD     + +SAC+           HG  ++
Sbjct: 340 TAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAIT 399

Query: 483 EGLRYF----NLMISDYHI---------------LPDSEHYTCLTDLLGRVGLLVEA--- 520
            GL ++    N +++ Y                 + D+  +T +     + G  VE    
Sbjct: 400 SGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQL 459

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHG 547
           +D +    ++P   TL   I AC   G
Sbjct: 460 FDKMVQHGLKPDGVTLTGVISACSRAG 486



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 138/275 (50%), Gaps = 4/275 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   L      G + +GKQ+H+ I++    + + + + ++ +Y KCK     + +FD M+
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N+V+W  ++ G    G        F  M    +  DH T    + AC     +E G +
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ 392

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H   +  G      VS++LV LYGKCG ++D+ R+F+E+  RD V W  MVS YA    
Sbjct: 393 FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGR 452

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               I +F+ M   G+K D  T + ++++C   G  + G++   L+  +   +  +   S
Sbjct: 453 AVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYS 512

Query: 304 -LVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMV 336
            ++D+++++G +++A R  +GM    + + W T++
Sbjct: 513 CMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H    QA+   A    L++G Q H   +  GL + +++ N ++ +Y KC   DD  +LF+
Sbjct: 371 HYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFN 430

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           EM VR+ V+W  ++S     G  V     F +M+   ++ D +T   ++ AC +A  +E 
Sbjct: 431 EMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEK 490

Query: 181 GRRLHSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-C 237
           G+R    +  + G   +    S ++DL+ + G +E+A R  + +    D + W  ++S C
Sbjct: 491 GQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSAC 550

Query: 238 YALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGS 278
                L  G  A  +L+ L+      Y   SS+  S G   S
Sbjct: 551 RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDS 592



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
           G+ + S   + +H   I+        + N +++AY+   S   A + F  + +P+L +W 
Sbjct: 17  GARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWN 76

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +++ AY+  GL  E    FEK+       D + +  ++   S  GLV   ++ +N M+ D
Sbjct: 77  NLLLAYSKAGLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRD 132

Query: 495 Y 495
           +
Sbjct: 133 F 133


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 323/590 (54%), Gaps = 33/590 (5%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD-NV 158
           N +L  Y K     +ME+ F+++  R+ VTWN LI G    G  G     +  M+ D + 
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSS 132

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            L  +T  ++L+       + +G+++H  ++K+GF     V S L+D+Y K G + DA++
Sbjct: 133 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK 192

Query: 219 VFDEV------------------------------LCRDLVLWNVMVSCYALNCLGDGAI 248
           VF  +                              + +D V W+ M+   A N +   AI
Sbjct: 193 VFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAI 252

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
             F  M++EG+K D + F S++ +CG LG+   GRQIH  +I+ +    + V ++L+DMY
Sbjct: 253 ECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMY 312

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K   +  A  VFD M  KNVVSW  MVVG+GQ G   EAVK+  DM +    PD  TL 
Sbjct: 313 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLG 372

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
             +S+C ++S   E  Q H  AI  G+  ++++ N+L+  Y KCG I  + + F  +   
Sbjct: 373 QAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVR 432

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D V+WT+++ AYA  G + E+I++F+KM+   ++PD +    V+SACS  GLV +G RYF
Sbjct: 433 DEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYF 492

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            LMI++Y I+P + HY+C+ DL  R G + EA   +  MP  P +      + AC+  G+
Sbjct: 493 ELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGN 552

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           + + KWAAE L+EL+P  P  Y L+S++YAS+  W  VA+LR+ M++    K PG SWI+
Sbjct: 553 LEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIK 612

Query: 609 IAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
             G++H+F + D S P +  +YA L  ++  + +N      + +  +++E
Sbjct: 613 WKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEE 662



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 197/404 (48%), Gaps = 34/404 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK+S+  G +  GKQ+H  ++KLG  + L + + +L +Y K     D +K+F  +  RN 
Sbjct: 143 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNT 202

Query: 130 VTWNTLISGIINCG--------------------------------GNVTPYFRRMLLDN 157
           V +NTL+ G++ CG                                      FR M ++ 
Sbjct: 203 VMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEG 262

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           +++D   F S+L AC     I  GR++H+ I++     + +V SAL+D+Y KC  +  A+
Sbjct: 263 LKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAK 322

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            VFD +  +++V W  MV  Y        A+ +F  M+  G+  D++T    +++C  + 
Sbjct: 323 TVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANIS 382

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           S + G Q HG  I       + V+ SLV +Y K G+IDD+ R+F+ M  ++ VSW  MV 
Sbjct: 383 SLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVS 442

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQ 396
            + Q G   EA++L   M+Q    PD VTL  ++S+C    +  + ++     I   G+ 
Sbjct: 443 AYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIV 502

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
                 + +I+ +S+ G I  A+     +   PD + WT+++ A
Sbjct: 503 PSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA 546



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 192/416 (46%), Gaps = 64/416 (15%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN-LM 254
           N F  + L+  Y K G + +  R F+++  RD V WNV++  Y+L+ L   A+  +N +M
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           +         T  +++    + G   LG+QIHG VIK  F+  +LV + L+DMY+K G I
Sbjct: 128 KDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCI 187

Query: 315 DDACRVFDGMTAKNV------------------------------VSWNTMVVGFGQNGD 344
            DA +VF G+  +N                               VSW+ M+ G  QNG 
Sbjct: 188 SDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGM 247

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            +EA++  R+M       D+    S+L +CG L    + RQ+HA  I+  +Q  + + +A
Sbjct: 248 EKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSA 307

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y KC  +  A   F  +K+ ++V+WT+++  Y   G + E++++F  M    + PD
Sbjct: 308 LIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPD 367

Query: 465 SIAFLEVLSACS-----------HGGLVSEGLRYF----NLMISDYHI------------ 497
                + +SAC+           HG  ++ GL ++    N +++ Y              
Sbjct: 368 HYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFN 427

Query: 498 ---LPDSEHYTCLTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKVHG 547
              + D   +T +     + G  VEA   +D +  + ++P   TL   I AC   G
Sbjct: 428 EMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAG 483



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 140/275 (50%), Gaps = 4/275 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   L      G +  G+Q+H+ I++  L + + + + ++ +Y KCK     + +FD M+
Sbjct: 270 FGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 329

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N+V+W  ++ G    G  G     F  M    +  DH T    + AC     +E G +
Sbjct: 330 QKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQ 389

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H   +  G      VS++LV LYGKCG ++D+ R+F+E+  RD V W  MVS YA    
Sbjct: 390 FHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGR 449

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI +F+ M   G+K D  T + ++++C   G  + G++   L+I +   +      S
Sbjct: 450 AVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYS 509

Query: 304 -LVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
            ++D+++++G I++A    +GM  + + + W T++
Sbjct: 510 CMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLL 544



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 70/285 (24%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +S+ +  C  LG+S+  + IHG +I+     +  +  ++V  YA   +   A RVFDG+ 
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 326 AKNVVSWNTMVVGFGQNGDGRE-------------------------------AVKLLRD 354
             N+ SWN +++ + ++G   E                               AVK    
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 355 MLQG-SFCPDEVTLASIL---SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           M++  S     VTL ++L   SS G +S+    +Q+H   IK G +++L + + L++ YS
Sbjct: 126 MMKDFSSNLTRVTLMTMLKLSSSNGHVSLG---KQIHGQVIKLGFESYLLVGSPLLDMYS 182

Query: 411 K-------------------------------CGSIAGALQCFGSVKEPDLVTWTSIIGA 439
           K                               CG I  ALQ F  + E D V+W+++I  
Sbjct: 183 KVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKG 241

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            A +G+ KE+IE F +M    ++ D   F  VL AC   G +++G
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDG 286



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 5/200 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H    QA+   A    L++G Q H   +  GL + +++ N ++ +Y KC   DD  +LF+
Sbjct: 368 HYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFN 427

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           EM VR+ V+W  ++S     G  V     F +M+   ++ D +T   ++ AC +A  +E 
Sbjct: 428 EMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEK 487

Query: 181 GRRLHSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS-C 237
           G+R    ++ + G   +    S ++DL+ + G +E+A    + +  R D + W  ++S C
Sbjct: 488 GQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSAC 547

Query: 238 YALNCLGDGAIAVFNLMRLE 257
                L  G  A  +L+ L+
Sbjct: 548 RNKGNLEIGKWAAESLIELD 567



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           +  C  L  S   + +H   I+        + N +++AY+   S   A + F  + +P+L
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
            +W +++ AY+  G   E    FEK+       D + +  ++   S  GLV   ++ +N 
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 491 MISDY 495
           M+ D+
Sbjct: 126 MMKDF 130


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/602 (32%), Positives = 349/602 (57%), Gaps = 4/602 (0%)

Query: 45  LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV 104
           L  Q+ N  ++       +   S ALK  A    L  GK +H  + K+ +   + + + +
Sbjct: 224 LFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSAL 283

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLL-DNVRLD 161
           + +Y KC   +D  K+F E    ++V W ++ISG    G       +F RM++ + V  D
Sbjct: 284 IDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPD 343

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
            +T  S+  AC Q  + ++GR +H F+ + G      ++++L+ LYGK G +++A  +F 
Sbjct: 344 PVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFR 403

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           E+  +D++ W+ MV+CYA N      + +FN M  + +K ++ T  S++ +C  + + + 
Sbjct: 404 EMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEE 463

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G +IH L +   F+++  V+T+L+DMY K  + + A  +F+ M  K+V++W  +  G+  
Sbjct: 464 GMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYAD 523

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG   E++ + R+ML     PD + L  IL++   L I  +   +HA+ IKNG +    I
Sbjct: 524 NGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFI 583

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA- 460
             +LI  Y+KC SI  A + F  +   D+VTW+SII AY FHG  +E++++F +M +H+ 
Sbjct: 584 GASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSD 643

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            +P+++ F+ +LSACSH GL+ EG+  F++M++ Y + P+SEHY  + DLLGR+G L  A
Sbjct: 644 TKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMA 703

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            D++ +MP++   D  GA +GAC++H +I + + AA+ L  L+P+    Y L+SN+Y+ +
Sbjct: 704 LDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVD 763

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W    +LR+++++   +K+ G S +E+  E+ +F++ DR H ++ H+Y +L  +   M
Sbjct: 764 ENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKLHAKM 823

Query: 641 EE 642
            E
Sbjct: 824 RE 825



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 221/412 (53%), Gaps = 12/412 (2%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           QLHS  +K GL +   +  ++  +Y +  +     KLF E   R +  WN L+      G
Sbjct: 157 QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEG 216

Query: 144 GNVT--PYFRRMLLDNV-------RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
             V     FR+M  +NV       R D+ + +  L++C     + +G+ +H F+ KV   
Sbjct: 217 EWVETLSLFRQM--NNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRID 274

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FV SAL+DLY KCG + DA +VF E    D+VLW  ++S Y  +   + A+A F+ M
Sbjct: 275 GDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRM 334

Query: 255 RL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
            + E +  D  T  S+ ++C  L + KLGR +HG V ++  D  + +A SL+ +Y K G+
Sbjct: 335 VVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGS 394

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           I +A  +F  M+ K+++SW+TMV  +  NG   + + L  +ML     P+ VT+ S+L +
Sbjct: 395 IKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRA 454

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C  +S   E  ++H  A+  G +   ++  AL++ Y KC S   A+  F  + + D++ W
Sbjct: 455 CACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAW 514

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
             +   YA +G+  ES+ VF  MLS   RPD+IA +++L+  S  G++ + +
Sbjct: 515 AVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAV 566



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 179/353 (50%), Gaps = 9/353 (2%)

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LHS  LK G   + F+ + L  LY +   +  A ++F E   R + LWN ++  Y    
Sbjct: 157 QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEG 216

Query: 243 LGDGAIAVFNLMR------LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
                +++F  M       +E  + D ++ S  + SC  L    LG+ IHG + K   D 
Sbjct: 217 EWVETLSLFRQMNNVSSVSIEE-RPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDG 275

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL-RDM 355
           D+ V ++L+D+Y K G ++DA +VF      +VV W +++ G+ Q+G    A+    R +
Sbjct: 276 DMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMV 335

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +     PD VTL S+ S+C  LS     R VH +  + G+   L + N+L++ Y K GSI
Sbjct: 336 VSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSI 395

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F  + + D+++W++++  YA +G   + +++F +ML   ++P+ +  + VL AC
Sbjct: 396 KNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRAC 455

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           +    + EG++   L + +Y    ++   T L D+  +     +A DL   MP
Sbjct: 456 ACISNLEEGMKIHELAV-NYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMP 507


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 320/557 (57%), Gaps = 7/557 (1%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN 157
           L   ++  Y       +   LFDEM  R++V W  +I+G  +C  +   +  F  M+ + 
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF-VEDA 216
           +  +  T +S+L+AC     +  GR +H   +K G     +V +AL+D+Y  C   ++DA
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDA 164

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF  +  ++ V W  +++ Y     G G + VF  M LE ++ + F+FS  V +C ++
Sbjct: 165 CMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSI 224

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           GS   G Q+H  V K  F+ ++ V  S++DMY +     +A R F  M  +++++WNT++
Sbjct: 225 GSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLI 284

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +  +  E++ +   M    F P+  T  SI+++C +L+     +Q+H   I+ G+ 
Sbjct: 285 AGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD 343

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             L++ NALI+ YSKCG+IA + Q FG +   DLV+WT+++  Y  HG  +E++E+F+KM
Sbjct: 344 GNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKM 403

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
           +   +RPD + F+ +LSACSH GLV EGLRYF LM+ DY+I PD E Y C+ DLLGR G 
Sbjct: 404 VRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 463

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           + EAY+L+ SMP +P     G F+GACK H    L K AA ++L+L P     Y ++SN+
Sbjct: 464 VEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNI 523

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           YA++  W + ARLRK+M+   + K  G SW+E+   +++FV  D    +   +Y +L  +
Sbjct: 524 YAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENL 583

Query: 637 FGLMEENNVSGHCNVLD 653
            G M+E   SG+   LD
Sbjct: 584 IGHMKE---SGYVPDLD 597



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 206/382 (53%), Gaps = 6/382 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-KAFDDMEKLFDEMR 125
           S  LK       L  G+ +H   +K GL   + + N ++ +Y  C  + DD   +F  + 
Sbjct: 113 SSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIH 172

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++N V+W TLI+G    + G      FR+MLL+ V L+  +F+  +RAC        G +
Sbjct: 173 LKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQ 232

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ + K GF  N  V ++++D+Y +C    +A R F E+  RDL+ WN +++ Y  +  
Sbjct: 233 LHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNP 292

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + ++ VF++M  EG   + FTF+S++ +C TL     G+QIHG +I++  D ++ ++ +
Sbjct: 293 TE-SLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNA 351

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K GNI D+ +VF GM+ +++VSW  M++G+G +G G EAV+L   M++    PD
Sbjct: 352 LIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 411

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCF 422
            V   +ILS+C    +  E  +     + +  +     I   +++   + G +  A +  
Sbjct: 412 RVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELI 471

Query: 423 GSVK-EPDLVTWTSIIGAYAFH 443
            S+  +PD   W   +GA   H
Sbjct: 472 ESMPFKPDECVWGPFLGACKAH 493



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 137/264 (51%), Gaps = 2/264 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A++     G    G+QLH+ + K G  + L + N +L +Y +C  F +  + F EM 
Sbjct: 214 FSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN 273

Query: 126 VRNIVTWNTLISGIINCGGNVTPY-FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            R+++TWNTLI+G        + Y F  M  +    +  TF S++ AC     +  G+++
Sbjct: 274 QRDLITWNTLIAGYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQI 333

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I++ G   N  +S+AL+D+Y KCG + D+ +VF  +  RDLV W  M+  Y  +  G
Sbjct: 334 HGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYG 393

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATS 303
           + A+ +F+ M   G++ D   F +++++C   G    G +   L++   +   D  +   
Sbjct: 394 EEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGC 453

Query: 304 LVDMYAKNGNIDDACRVFDGMTAK 327
           +VD+  + G +++A  + + M  K
Sbjct: 454 VVDLLGRAGKVEEAYELIESMPFK 477



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 1/182 (0%)

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           ++AT+L+  Y   G I +A  +FD M  ++VV+W  M+ G+    +   A  +  +M+  
Sbjct: 44  VLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNE 103

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG-SIAG 417
              P+  T++S+L +C  +      R VH  AIK+G+  F+ ++NAL++ Y+ C  S+  
Sbjct: 104 ELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDD 163

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  +   + V+WT++I  Y         + VF +ML   V  +  +F   + AC+ 
Sbjct: 164 ACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTS 223

Query: 478 GG 479
            G
Sbjct: 224 IG 225


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/570 (34%), Positives = 329/570 (57%), Gaps = 3/570 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK  A    +++ K++H +++KLG  +  ++ N ++  Y KC   +    LFDE+ 
Sbjct: 161 FTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELS 220

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WN++ISG    G   N   +F +ML   V +D  T  ++L AC    ++ +GR 
Sbjct: 221 DRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRA 280

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH++ +K GF      ++ L+D+Y KCG +  A  VF ++    +V W  +++ +    L
Sbjct: 281 LHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGL 340

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI +F+ M+ +G++ D +  +S+V++C    S   GR++H  + K +   ++ V+ +
Sbjct: 341 HYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNA 400

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MYAK G++++A  +F  +  KN+VSWNTM+ G+ QN    EA++L  DM Q    PD
Sbjct: 401 LMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPD 459

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           +VT+A +L +C  L+   + R++H + ++ G  + L +  AL++ Y KCG +  A Q F 
Sbjct: 460 DVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFD 519

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + D++ WT +I  Y  HG  KE+I  FEKM    + P+  +F  +L AC+H GL+ E
Sbjct: 520 MIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKE 579

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G + F+ M S+ +I P  EHY C+ DLL R G L  AY  + +MPI+P +   GA +  C
Sbjct: 580 GWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGC 639

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H  + LA+  AE + ELEP     Y L++NVYA    W +V ++++ +         G
Sbjct: 640 RIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQG 699

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           CSWIE+ G+ + F + D SHPQA  + ++L
Sbjct: 700 CSWIEVQGKFNIFFAGDTSHPQAKMIDSLL 729



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 237/476 (49%), Gaps = 26/476 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L++ A+   L+ GK++HS I   G+     L  +++ +YV C       ++FD + 
Sbjct: 60  YCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGIL 119

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              I  WN L+S     G        F +M    +R D  TF  +L+    +  +   +R
Sbjct: 120 NDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKR 179

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H ++LK+GFG    V ++L+  Y KCG VE AR +FDE+  RD+V WN M+S   +N  
Sbjct: 180 VHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGF 239

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               +  F  M   G+  D  T  +++ +C  +G+  LGR +H   +K  F   V+   +
Sbjct: 240 SRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNT 299

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K GN++ A  VF  M    +VSW +++    + G   EA+ L  +M      PD
Sbjct: 300 LLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPD 359

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
              + S++ +C   +   + R+VH +  KN + + L + NAL+N Y+KCGS+  A   F 
Sbjct: 360 IYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFS 419

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------- 476
            +   ++V+W ++IG Y+ + L  E++++F  M    ++PD +    VL AC+       
Sbjct: 420 QLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEK 478

Query: 477 ----HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               HG ++ +G  YF    SD H+         L D+  + GLLV A  L   +P
Sbjct: 479 GREIHGHILRKG--YF----SDLHVA------CALVDMYVKCGLLVLAQQLFDMIP 522



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 195/367 (53%), Gaps = 1/367 (0%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+ S+L+ C +   +E G+R+HS I   G  ++  + + LV +Y  CG +   RR+FD +
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
           L   + LWN+++S YA       ++ +F  M+  G++GD +TF+ ++         +  +
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           ++HG V+K  F     V  SL+  Y K G ++ A  +FD ++ ++VVSWN+M+ G   NG
Sbjct: 179 RVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNG 238

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
             R  ++    ML      D  TL ++L +C ++      R +HAY +K G    +   N
Sbjct: 239 FSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNN 298

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            L++ YSKCG++ GA + F  + E  +V+WTSII A+   GL  E+I +F++M S  +RP
Sbjct: 299 TLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRP 358

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D  A   V+ AC+    + +G    N  I   ++  +      L ++  + G + EA  +
Sbjct: 359 DIYAVTSVVHACACSNSLDKGREVHN-HIKKNNMGSNLPVSNALMNMYAKCGSMEEANLI 417

Query: 524 LASMPIE 530
            + +P++
Sbjct: 418 FSQLPVK 424



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 125/242 (51%)

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           +GD   A+  L R +  + +  T+ S++  C  L S + G+++H ++      +D ++  
Sbjct: 37  MGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGA 96

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LV MY   G++    R+FDG+    +  WN ++  + + G+ RE+V L   M +     
Sbjct: 97  KLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRG 156

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T   +L    + +   E ++VH Y +K G  ++ ++ N+LI AY KCG +  A   F
Sbjct: 157 DSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILF 216

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + + D+V+W S+I     +G S+  +E F +ML+  V  DS   + VL AC++ G ++
Sbjct: 217 DELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLT 276

Query: 483 EG 484
            G
Sbjct: 277 LG 278


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 319/560 (56%), Gaps = 3/560 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++G+++H  I+  G  + L +   V+ +Y KC+  D+  K+F+ M+ +++V+W TL++G
Sbjct: 161 LKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G          +M     + D +T  S+L A      + +GR +H +  + GF   
Sbjct: 221 YAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESL 280

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V++AL+D+Y KCG    AR VF  +  + +V WN M+   A N   + A A F  M  
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLD 340

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG      T   ++ +C  LG  + G  +H L+ K   D +V V  SL+ MY+K   +D 
Sbjct: 341 EGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDI 400

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ +   NV +WN M++G+ QNG  +EA+ L   M       D  TL  ++++   
Sbjct: 401 AASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALAD 459

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            S++ + + +H  A++  +   + +  AL++ Y+KCG+I  A + F  ++E  ++TW ++
Sbjct: 460 FSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAM 519

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  Y  HG+ KE++++F +M   AV+P+ I FL V+SACSH G V EGL  F  M  DY+
Sbjct: 520 IDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYY 579

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           + P  +HY+ + DLLGR G L +A++ +  MPI+P    LGA +GACK+H ++ L + AA
Sbjct: 580 LEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAA 639

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +KL +L+P +   + L++N+YAS   W  VA++R  M D   HK PGCSW+E+  EIHTF
Sbjct: 640 QKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTF 699

Query: 617 VSSDRSHPQAVHMYAMLCTV 636
            S   +HP++  +YA L T+
Sbjct: 700 YSGSTNHPESKKIYAFLETL 719



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 138/469 (29%), Positives = 234/469 (49%), Gaps = 11/469 (2%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           Q+   I+K G  N+   Q +V+ ++ K  +  +  ++F+ + ++  V ++ ++ G     
Sbjct: 65  QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
             G+   +F RM+ D VRL    +  LL+ C +  D++ GR +H  I+  GF  N FV +
Sbjct: 125 SLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMT 184

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           A++ LY KC  +++A ++F+ +  +DLV W  +V+ YA N     A+ +   M+  G K 
Sbjct: 185 AVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKP 244

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T  S++ +   + + ++GR IHG   +  F+  V V  +L+DMY K G+   A  VF
Sbjct: 245 DSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVF 304

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
            GM +K VVSWNTM+ G  QNG+  EA      ML     P  VT+  +L +C +L    
Sbjct: 305 KGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLE 364

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
               VH    K  + + +S+ N+LI+ YSKC  +  A   F ++++ + VTW ++I  YA
Sbjct: 365 RGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYA 423

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS---DYHIL 498
            +G  KE++ +F  M S  ++ D    + V++A +   +  +      L +    D ++ 
Sbjct: 424 QNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVF 483

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
                 T L D+  + G +  A  L   M  E    T  A I     HG
Sbjct: 484 VS----TALVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAMIDGYGTHG 527



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A F   +Q K +H   ++  + N + +   ++ +Y KC A     KLFD M+ R+++TWN
Sbjct: 458 ADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWN 517

Query: 134 TLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I   G    G      F  M    V+ + ITF S++ AC  +  +E G  L    ++ 
Sbjct: 518 AMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFK-SMQE 576

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRD--LVLWNVMVSCYALNCLGDGA 247
            + L   +   SA+VDL G+ G ++DA     E+  +    VL  ++ +C     +  G 
Sbjct: 577 DYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGE 636

Query: 248 IAVFNLMRLEGMKGDY 263
            A   L +L+  +G Y
Sbjct: 637 KAAQKLFKLDPDEGGY 652


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 326/568 (57%), Gaps = 3/568 (0%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
            L +GK++H   ++ GL + + +   ++ + V+C   D  ++ F  +  R++V +N LI+
Sbjct: 244 MLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIA 303

Query: 138 GIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
            +   G NV  +  + RM  D V L+  T+ S+L AC  +  +E G+ +HS I + G   
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSS 363

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  + +AL+ +Y +CG +  AR +F  +  RDL+ WN +++ YA       A+ ++  M+
Sbjct: 364 DVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ 423

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+K    TF  L+++C    +   G+ IH  +++     +  +A +L++MY + G++ 
Sbjct: 424 SEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLM 483

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A  VF+G  A++V+SWN+M+ G  Q+G    A KL ++M      PD +T AS+LS C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +       +Q+H    ++G+Q  +++ NALIN Y +CGS+  A   F S++  D+++WT+
Sbjct: 544 NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTA 603

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +IG  A  G   ++IE+F +M +   RP D   F  +LSAC+H GLV EG + F+ M S+
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESE 663

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y +LP  EHY CL  LLGR     EA  L+  MP  P +      +GAC++HG+I LA+ 
Sbjct: 664 YGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEH 723

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA   L+L    P  Y L+SNVYA+   W DVA++R++M      K PG SWIE+   IH
Sbjct: 724 AANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIH 783

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            F+++DRSHP+   +YA L  +   MEE
Sbjct: 784 EFIAADRSHPETAEIYAELKRLSVEMEE 811



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 252/468 (53%), Gaps = 3/468 (0%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T +  + Y   L+   +   L + K++H+ +++ G+   + L N ++++YVKC++  D  
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQAD 176
           ++F EM  R++++WN+LIS     G     +  F  M       + IT+ S+L AC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           ++E G+++HS I+K G+  +  V ++L+ +YGKCG +  AR+VF  +  RD+V +N M+ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA        + +F  M  EG+  D  T+ +L+++  T      G++IH L +++  + 
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D+ V T+LV M  + G++D A + F G+  ++VV +N ++    Q+G   EA +    M 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                 +  T  SIL++C +       + +H++  ++G  + + I NALI+ Y++CG + 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F ++ + DL++W +II  YA      E++ ++++M S  V+P  + FL +LSAC+
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           +    ++G +  +  I    I  +      L ++  R G L+EA ++ 
Sbjct: 443 NSSAYADG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 249/477 (52%), Gaps = 16/477 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-- 136
           L+ GK++HS I+K G      +QN +L +Y KC       ++F  +  R++V++NT++  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 137 ----SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
               + +  C G     F +M  + +  D +T+ +LL A      ++ G+R+H   ++ G
Sbjct: 204 YAQKAYVKECLG----LFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  V +ALV +  +CG V+ A++ F  +  RD+V++N +++  A +     A   + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR +G+  +  T+ S++N+C T  + + G+ IH  + +     DV +  +L+ MYA+ G
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG 379

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++  A  +F  M  ++++SWN ++ G+ +  D  EA++L + M      P  VT   +LS
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C + S   + + +H   +++G+++   + NAL+N Y +CGS+  A   F   +  D+++
Sbjct: 440 ACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W S+I  +A HG  + + ++F++M +  + PD+I F  VLS C +   +  G +  +  I
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG-KQIHGRI 558

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHG 547
           ++  +  D      L ++  R G L +A ++  S+      D +   A IG C   G
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL---QHRDVMSWTAMIGGCADQG 612


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 310/533 (58%), Gaps = 3/533 (0%)

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLL 169
           +  +   KLFDE+  R++++WN++ISG ++ G +      F +MLL  +  D  T  S++
Sbjct: 199 RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVV 258

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
             C     + +GR LH + +K  FG    +++ L+D+Y K G +  A +VF+ +  R +V
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 318

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  M++ YA   L D ++ +F+ M  EG+  D FT ++++++C   G  + G+ +H  +
Sbjct: 319 SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI 378

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
            +     D+ V+ +L+DMYAK G++ DA  VF  M  K++VSWNTM+ G+ +N    EA+
Sbjct: 379 KENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEAL 438

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
            L  +M Q +  P+ +T+A IL +C SL+     +++H + ++NG      + NAL++ Y
Sbjct: 439 NLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMY 497

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
            KCG++  A   F  + E DLV+WT +I  Y  HG   E+I  F +M +  + PD ++F+
Sbjct: 498 LKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFI 557

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            +L ACSH GL+ EG  +FN+M ++  I P SEHY C+ DLL R G L +AY  +  MPI
Sbjct: 558 SILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPI 617

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           EP +   GA +  C+++  + LA+  AE + ELEP     Y L++N+YA    W +V +L
Sbjct: 618 EPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKL 677

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           R+ +      K PGCSWIEI G++H FV+ D SHP A  +  +L      M+E
Sbjct: 678 RERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKE 730



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 3/265 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L+ GK +H++I +  + + L + N ++ +Y KC +  D   +F EM+V++IV+WNT+I
Sbjct: 366 GLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMI 425

Query: 137 SGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
            G   N   N        +  N + + IT   +L AC     +E G+ +H  IL+ GF L
Sbjct: 426 GGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSL 485

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  V++ALVD+Y KCG +  AR +FD +  +DLV W VM++ Y ++  G  AIA FN MR
Sbjct: 486 DRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMR 545

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNI 314
             G++ D  +F S++ +C   G    G     ++      +        +VD+ A+ GN+
Sbjct: 546 NSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNL 605

Query: 315 DDACRVFDGMTAK-NVVSWNTMVVG 338
             A +    M  + +   W  ++ G
Sbjct: 606 SKAYKFIKMMPIEPDATIWGALLCG 630



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 50/315 (15%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM----------------- 307
           T+ S++  C  L S + GR+IH ++     ++D ++ + LV M                 
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 308 --------------YAKNGN------------------IDDACRVFDGMTAKNVVSWNTM 335
                         YAK GN                  ++ A ++FD +  ++V+SWN+M
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+  NG   + + L   ML      D  T+ S+++ C +  +    R +H YAIK   
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              L++ N L++ YSK G++  A+Q F ++ E  +V+WTS+I  YA  GLS  S+ +F +
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M    + PD      +L AC+  GL+  G    N  I +  +  D      L D+  + G
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNY-IKENKMQSDLFVSNALMDMYAKCG 401

Query: 516 LLVEAYDLLASMPIE 530
            + +A+ + + M ++
Sbjct: 402 SMGDAHSVFSEMQVK 416


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/611 (34%), Positives = 328/611 (53%), Gaps = 38/611 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK    +  L++G+++H+ +  +G+   +++   ++ +Y KC       ++F +M  RN+
Sbjct: 164 LKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNV 223

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W  +I               + +ML   +  + +TF SLL +C   + +  GRR+HS 
Sbjct: 224 VSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 283

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I + G   +  V++AL+ +Y KC  V++AR +FD +  RD++ W+ M++ YA +   D  
Sbjct: 284 ISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKE 343

Query: 248 I--AVFNL---MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD----- 297
               VF L   MR EG+  +  TF S++ +C   G+ + GRQIH  + K  F+LD     
Sbjct: 344 SIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQT 403

Query: 298 --------------------------VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
                                     V+  TS + MY K G++  A +VF  M  +NVVS
Sbjct: 404 AIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVS 463

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN M+ G+ QNGD  +  +LL  M    F PD VT+ +IL +CG+L+     + VHA A+
Sbjct: 464 WNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAV 523

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           K G+++   +  +LI  YSKCG +A A   F  +   D V W +++  Y  HG   E+++
Sbjct: 524 KLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVD 583

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F++ML   V P+ I    V+SACS  GLV EG   F +M  D+ + P  +HY C+ DLL
Sbjct: 584 LFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLL 643

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G L EA + + SMP EP      A +GACK H ++ LA+ AA  +LELEPS    Y 
Sbjct: 644 GRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYI 703

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
            +SN+YA    W D  ++R++M D    K  G S IEI G IHTFV+ D +HP+   ++A
Sbjct: 704 TLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHA 763

Query: 632 MLCTVFGLMEE 642
            L T+   M+E
Sbjct: 764 ELETLTKEMKE 774



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 195/369 (52%), Gaps = 6/369 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  ++  C +A   E G+ +H  + ++G  ++ ++ ++L++ Y K   V  A +VF  +
Sbjct: 58  TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRM 117

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RD+V W+ M++ YA N     A   F  M    ++ +  TF S++ +C      + GR
Sbjct: 118 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGR 177

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IH +V     + DV VAT+L+ MY+K G I  AC VF  MT +NVVSW  ++    Q+ 
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHR 237

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA +L   MLQ    P+ VT  S+L+SC +       R++H++  + G++  + + N
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVAN 297

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS-KESI-EVF---EKMLS 458
           ALI  Y KC S+  A + F  + + D+++W+++I  YA  G   KESI EVF   E+M  
Sbjct: 298 ALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRR 357

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             V P+ + F+ +L AC+  G + +G R  +  +S      D    T + ++  + G + 
Sbjct: 358 EGVFPNKVTFMSILRACTAHGALEQG-RQIHAELSKVGFELDRSLQTAIFNMYAKCGSIY 416

Query: 519 EAYDLLASM 527
           EA  + + M
Sbjct: 417 EAEQVFSKM 425



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 133/240 (55%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI +  +++  G+  +  T+  ++  C      + G+ +H  + +   ++D+ +  SL++
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN 99

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            Y+K  ++  A +VF  MT ++VV+W++M+  +  N    +A      M   +  P+ +T
Sbjct: 100 FYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRIT 159

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             SIL +C + SI  + R++H      G++  +++  ALI  YSKCG I+ A + F  + 
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT 219

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E ++V+WT+II A A H    E+ E++E+ML   + P+++ F+ +L++C+    ++ G R
Sbjct: 220 ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRR 279



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 2/219 (0%)

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G  REA++LL  + Q     +  T   ++  C       + + VH    + GV+  + + 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N+LIN YSK   +A A Q F  +   D+VTW+S+I AYA +    ++ + FE+M    + 
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+ I FL +L AC++  ++ +G R  + ++    +  D    T L  +  + G +  A +
Sbjct: 155 PNRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           +   M  E    +  A I A   H  +  A    E++L+
Sbjct: 214 VFHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/593 (35%), Positives = 331/593 (55%), Gaps = 12/593 (2%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           Q+L  S     L+  +Q HS I+ LGL     L  +++  Y  C+       +FD ++ +
Sbjct: 28  QSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHK 87

Query: 128 NIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+  WN+LI+G             F +M   +V  D  T ++L +   +   +  G+ +H
Sbjct: 88  NVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIH 147

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL--NC- 242
              +++GF  +  V+++++ +Y KCG  E++R+VFDE+  R+   WNV+++ YA+  NC 
Sbjct: 148 GKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCN 207

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSF----DLD 297
             +        M+++ ++ D +T SSL+  C G  G    GR++H  ++K       D D
Sbjct: 208 FREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSD 267

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-L 356
           V +   L+DMY+++  +    RVFD M  +NV SW  M+ G+ +NGD  EA+ L RDM +
Sbjct: 268 VHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQV 327

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P+ V+L S+L +C S S     RQ+H +A++  +   +S+ NALI+ YSKCGS+ 
Sbjct: 328 IDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLD 387

Query: 417 GALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            A + F       D ++W+S+I  Y  HG  +E+I +++KML   +RPD I  + +LSAC
Sbjct: 388 SARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSAC 447

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           S  GLV+EGL  ++ +I+DY I P  E + C+ D+LGR G L  A D + +MP+EP    
Sbjct: 448 SRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSV 507

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
            GA +    +HG + + + A   L++LEP  P NY  +SN+YAS R W  VA +R+MM+D
Sbjct: 508 WGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKD 567

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
               KVPGCSWI I  + H F  +D++HP A  +Y ML  +   M +   S H
Sbjct: 568 KRLRKVPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDLLLTMNDAICSPH 620


>gi|242085086|ref|XP_002442968.1| hypothetical protein SORBIDRAFT_08g005540 [Sorghum bicolor]
 gi|241943661|gb|EES16806.1| hypothetical protein SORBIDRAFT_08g005540 [Sorghum bicolor]
          Length = 463

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/430 (47%), Positives = 277/430 (64%), Gaps = 26/430 (6%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALN 241
           LH   LK G      V++AL   Y + G V  ARRVFDE     RDLVL N MVSCYA +
Sbjct: 30  LHPLALKSGRASETRVATALAVAYARSGLVAHARRVFDETPPPRRDLVLCNAMVSCYAAH 89

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSL-------------------VNSCGTLGSSKLG 282
            L   A A+F   R  G+  D FTFS+L                   V   G L +  +G
Sbjct: 90  GLPRQAWALFAAARRSGLDPDGFTFSALLRPPLPRRCHHHPPAVVDNVVDAGLLLA--MG 147

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
              HGLV++     DV+VAT+L+DMYAK  G +D+A RVFD M  +NVVSWN MVV +G+
Sbjct: 148 AMAHGLVLRLGLLADVVVATALLDMYAKCGGRVDEARRVFDAMAVRNVVSWNAMVVCYGR 207

Query: 342 -NGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             G G++AV+L R ML+ GS  PDE+TLAS+LSSC  ++ + E  QVHAYA+K G+  FL
Sbjct: 208 VGGGGKDAVELFRRMLRDGSCSPDELTLASVLSSCAGMAAANEATQVHAYAVKRGLHGFL 267

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + NA I AY K G +  A Q F  + +PD+V+W+S+I ++A+ GLSK+++ VFE+ML H
Sbjct: 268 QVANAAITAYGKAGFVREAKQTFAMICDPDVVSWSSMISSFAYLGLSKDAVHVFERMLRH 327

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V+PD +AFL VLSACSH GLV EGL+YF +M   Y I P+ +H  CL DLLGR G + +
Sbjct: 328 GVQPDGVAFLGVLSACSHAGLVEEGLQYFLMMTRGYSIDPNPQHLACLVDLLGRAGRIED 387

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           AY+++  +  E  +D +GAF+GACK+ G + LAKWAA++LL LEPS+ VNY L+SN +A+
Sbjct: 388 AYNVVIKLSCESNADIVGAFLGACKMRGKVELAKWAADRLLCLEPSEAVNYLLMSNAFAA 447

Query: 580 ERCWFDVARL 589
              W ++A++
Sbjct: 448 AGAWNELAKV 457



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 6/249 (2%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA-FDDMEKLFDEMRVRNIVTWNTLI 136
            L  G   H  +++LGL   + +   +L +Y KC    D+  ++FD M VRN+V+WN ++
Sbjct: 143 LLAMGAMAHGLVLRLGLLADVVVATALLDMYAKCGGRVDEARRVFDAMAVRNVVSWNAMV 202

Query: 137 S--GIINCGG-NVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
              G +  GG +    FRRML D +   D +T  S+L +C          ++H++ +K G
Sbjct: 203 VCYGRVGGGGKDAVELFRRMLRDGSCSPDELTLASVLSSCAGMAAANEATQVHAYAVKRG 262

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                 V++A +  YGK GFV +A++ F  +   D+V W+ M+S +A   L   A+ VF 
Sbjct: 263 LHGFLQVANAAITAYGKAGFVREAKQTFAMICDPDVVSWSSMISSFAYLGLSKDAVHVFE 322

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKN 311
            M   G++ D   F  ++++C   G  + G Q   ++ +  S D +      LVD+  + 
Sbjct: 323 RMLRHGVQPDGVAFLGVLSACSHAGLVEEGLQYFLMMTRGYSIDPNPQHLACLVDLLGRA 382

Query: 312 GNIDDACRV 320
           G I+DA  V
Sbjct: 383 GRIEDAYNV 391



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           AS +S       +C    +H  A+K+G  +   +  AL  AY++ G +A A + F     
Sbjct: 12  ASSVSGGAGHRRACAAWTLHPLALKSGRASETRVATALAVAYARSGLVAHARRVFDETPP 71

Query: 428 P--DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           P  DLV   +++  YA HGL +++  +F       + PD   F  +L
Sbjct: 72  PRRDLVLCNAMVSCYAAHGLPRQAWALFAAARRSGLDPDGFTFSALL 118


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/671 (32%), Positives = 353/671 (52%), Gaps = 99/671 (14%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L+ S KF     GK +H+ I+K GL   + L N +++ Y K     D  ++FDEM 
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 126 VRNIVTWNTLISGIINCG---------------------------------GNVTPYFRR 152
           V+++ +WN ++SG    G                                  N    FR 
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M+ D+V     T  ++L +C   + + +GR++HSF++K G      V+++L+++Y K G 
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD 195

Query: 213 VEDARRVFD-------------------------------EVLCRDLVLWNVMVSCYALN 241
              A+ VFD                               +++ RD+V WN M+S Y  +
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 242 CLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD----- 295
                A+ +F+ M ++   K D FT +S +++C  L + KLG+QIH  +I+  FD     
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAV 315

Query: 296 ----------------------------LDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
                                       LDV+  T+L+D Y K G+I+ A R+FD +  +
Sbjct: 316 GNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR 375

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           +VV+W  M+VG+ QNG  ++A++L R M++    P+  TLA++LS   SL+     RQ+H
Sbjct: 376 DVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIH 435

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLS 446
           A A ++G  + +S+ NALI  Y+K GSI  A   F  +  + D +TWTS+I A A HGL 
Sbjct: 436 ASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLG 495

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           +E++ +FE+ML + ++PD I ++ VLSAC+H GLV +G  Y+NLM + + I+P   HY C
Sbjct: 496 EEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYAC 555

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + DL GR GLL EA+  + +MPIEP     G+ + +CKVH ++ LA+ AAE+LL +EP  
Sbjct: 556 MIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPEN 615

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
              Y+ ++NVY++   W + A +RK M+D    K  G SW++I  ++H F   D  HPQ 
Sbjct: 616 SGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQR 675

Query: 627 VHMYAMLCTVF 637
             +Y M+  ++
Sbjct: 676 DAIYEMMAKIW 686


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 318/556 (57%), Gaps = 5/556 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H+ ++  G  ++  +   +L +Y K     D  K+F+ +  RN V+WN +ISG ++
Sbjct: 183 GEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVS 242

Query: 142 CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G     Y  F RML + +R +   F S+ +A  Q  D+E GR ++    ++G   N  V
Sbjct: 243 NGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHV 302

Query: 200 SSALVDLYGKCGFVEDARRVFDEVL--CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            +AL+D++ KCG V ++  VF      C   + WN M+S + ++  G+ A+ +F  M   
Sbjct: 303 GTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQN 362

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +K D +T+ S +NS   + S +  +Q+HG++ K S  + V +  +L+D YAK G +D  
Sbjct: 363 NIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWK-SGSIGVSLCNALMDAYAKCGELDAM 421

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            ++FD     N +SW T+V  + Q+ +  +A+ +   M +  F P++VT + +L+SC SL
Sbjct: 422 RKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASL 481

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 +QVH+   K G      +E+ LI+ Y+KCGS+  A++ F S+K+PD+++WT++I
Sbjct: 482 CSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMI 541

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             YA HG++K+++E+F KM      P+S  FL +L ACSHGGLV EGLRYF+LM   Y +
Sbjct: 542 SGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGL 601

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
           +P+ EHY C+ D+LGRVG L EA+  +  MPIEP        +GAC+VHG+I LAK AA+
Sbjct: 602 VPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQ 661

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           K+L   P       L+SN Y           +R MM+     K  G SWI I G+IH F 
Sbjct: 662 KVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKIHKFC 721

Query: 618 SSDRSHPQAVHMYAML 633
           S D+ HPQ   +Y  L
Sbjct: 722 SGDQYHPQKDDIYKTL 737



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 252/506 (49%), Gaps = 12/506 (2%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNK--LSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           + ++ SA    L++ K +H  ++K  L  K    + NQ++  Y KC  F    ++FDE+ 
Sbjct: 66  ELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIP 125

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++ +W  L+ G    G   +   YF  +L  ++  D    ++ ++AC+  D I VG  
Sbjct: 126 QKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEM 185

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++  GF    FV+++L+ +Y K G + D+ +VF+ +  R+ V WN M+S +  N L
Sbjct: 186 VHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGL 245

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A   F  M  E ++ +   F S+  + G LG  + GR I+ +  +     ++ V T+
Sbjct: 246 YAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTA 305

Query: 304 LVDMYAKNGNIDDACRVF-DGMTAKNV-VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           L+DM+AK G + ++  VF    +   V + WN M+ GF  +G G EA+ L   M Q +  
Sbjct: 306 LIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIK 365

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            D  T  S L+S   +      +Q+H    K+G    +S+ NAL++AY+KCG +    + 
Sbjct: 366 RDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIG-VSLCNALMDAYAKCGELDAMRKL 424

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F + +E + ++WT+++ AY+     ++++ VF +M     +P+ + F  VL++C+    +
Sbjct: 425 FDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSL 484

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
             G +  +L         D    + L D+  + G + +A  +  S+  +P   +  A I 
Sbjct: 485 EYGQQVHSLTCKT-GFARDKCVESVLIDMYAKCGSVRDAIKVFESLK-DPDVISWTAMIS 542

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKP 567
               H   G+AK A E   ++E   P
Sbjct: 543 GYAQH---GMAKDALELFRKMELVLP 565


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 329/564 (58%), Gaps = 6/564 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ LH   +K GL + + + + ++ +Y+K    +   ++F++M  RN+V+W  +I+G+++
Sbjct: 143 GELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N+    YF  M    V  D  TF   L+A   +  +  G+ +H+  +K GF  + FV
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 262

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            + L  +Y KCG  +   R+F+++   D+V W  ++S Y      + A+  F  MR   +
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYV 322

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +TF+++++SC  L ++K G QIHG V++      + VA S++ +Y+K G +  A  
Sbjct: 323 SPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASL 382

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF G+T K+++SW+T++  + Q G  +EA   L  M +    P+E  L+S+LS CGS+++
Sbjct: 383 VFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 442

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +QVHA+ +  G+     + +A+I+ YSKCGS+  A + F  +K  D+++WT++I  
Sbjct: 443 LEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMING 502

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E+I +FEK+ S  ++PD + F+ VL+AC+H G+V  G  YF LM + Y I P
Sbjct: 503 YAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISP 562

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY CL DLL R G L EA  ++ SMP           + AC+VHG +   +W AE+L
Sbjct: 563 SKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQL 622

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+L+P+    +  ++N+YA++  W + A +RK+M+     K  G SW+ +  +++ FV+ 
Sbjct: 623 LQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAG 682

Query: 620 DRSHPQAVHMYAMLCTVFGLMEEN 643
           D++HPQ+ H    + TV  L+  N
Sbjct: 683 DQAHPQSEH----ITTVLKLLSAN 702



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 192/380 (50%), Gaps = 13/380 (3%)

Query: 111 CKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV------RLDHIT 164
           CKA      +FD+M  R+ ++W TLI+G +N   +   Y   +L  N+      + D   
Sbjct: 74  CKA----RYMFDKMTHRDEISWTTLIAGYVNASDS---YEALILFSNMWVHPGPQRDQFM 126

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            +  L+AC    +I  G  LH F +K G   + FVSSAL+D+Y K G +E   RVF++++
Sbjct: 127 ISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMM 186

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R++V W  +++           +  F+ M    +  D  TF+  + +         G+ 
Sbjct: 187 TRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKA 246

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH   IKQ FD    V  +L  MY K G  D   R+F+ M   +VVSW T++  + Q G+
Sbjct: 247 IHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGE 306

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
              AV+  + M +    P++ T A+++SSC +L+ +    Q+H + ++ G+   LS+ N+
Sbjct: 307 EEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANS 366

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +I  YSKCG +  A   F  +   D+++W++II  Y+  G +KE+ +    M     +P+
Sbjct: 367 IITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPN 426

Query: 465 SIAFLEVLSACSHGGLVSEG 484
             A   VLS C    L+ +G
Sbjct: 427 EFALSSVLSVCGSMALLEQG 446



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 131/269 (48%), Gaps = 1/269 (0%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFS 267
           K G +  AR +FD++  RD + W  +++ Y        A+ +F+ M +  G + D F  S
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
             + +C    +   G  +HG  +K      V V+++L+DMY K G I+  CRVF+ M  +
Sbjct: 129 VALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR 188

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           NVVSW  ++ G    G   E +    +M +     D  T A  L +    S+    + +H
Sbjct: 189 NVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIH 248

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
              IK G      + N L   Y+KCG     ++ F  ++ PD+V+WT++I  Y   G  +
Sbjct: 249 TQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEE 308

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            ++E F++M    V P+   F  V+S+C+
Sbjct: 309 HAVEAFKRMRKSYVSPNKYTFAAVISSCA 337



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 37/295 (12%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM- 355
           ++L   S +    K G +  A  +FD MT ++ +SW T++ G+    D  EA+ L  +M 
Sbjct: 56  NMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 115

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +      D+  ++  L +C      C    +H +++K+G+   + + +ALI+ Y K G I
Sbjct: 116 VHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKI 175

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
               + F  +   ++V+WT+II      G + E +  F +M    V  DS  F   L A 
Sbjct: 176 EQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKAS 235

Query: 476 S-----------HGGLVSEGLRYFNLMIS------------DYHI-------LPDSEHYT 505
           +           H   + +G    + +I+            DY +       +PD   +T
Sbjct: 236 ADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWT 295

Query: 506 CLTDLLGRVGL---LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            L     ++G     VEA+  +    + P   T  A I +C    ++  AKW  +
Sbjct: 296 TLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSC---ANLAAAKWGEQ 347


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 317/567 (55%), Gaps = 3/567 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           ++  A+   L +GKQLH+ +++ G      L N  L++Y KC   D   KLFD+M  RN+
Sbjct: 82  IQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNM 141

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W ++I+G  +          F +M ++         +S+L+AC     I+ G ++H  
Sbjct: 142 VSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCL 201

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K GFG   FV S L D+Y KCG + DA + F+E+ C+D VLW  M+  +  N     A
Sbjct: 202 VVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKA 261

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +  +  M  + +  D     S +++C  L +S  G+ +H  ++K  F+ +  +  +L DM
Sbjct: 262 LTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDM 321

Query: 308 YAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           Y+K+G++  A  VF   +   ++VS   ++ G+ +     +A+    D+ +    P+E T
Sbjct: 322 YSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFT 381

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             S++ +C + +      Q+H   +K   +    + + L++ Y KCG    ++Q F  ++
Sbjct: 382 FTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE 441

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
            PD + W +++G ++ HGL + +IE F  M+   ++P+++ F+ +L  CSH G+V +GL 
Sbjct: 442 NPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLN 501

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF+ M   Y ++P  EHY+C+ DLLGR G L EA D + +MP EP      +F+GACK+H
Sbjct: 502 YFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIH 561

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G +  AK+AA+KL++LEP     + L+SN+YA E+ W DV  LRKM++D   +K+PG SW
Sbjct: 562 GDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSW 621

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           ++I  + H F   D SHPQ   +Y  L
Sbjct: 622 VDIRNKTHVFGVEDWSHPQKKEIYEKL 648



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 198/388 (51%), Gaps = 3/388 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T   L++   +  ++  G++LH+ +++ G   N F+S+  ++LY KCG ++   ++F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D++  R++V W  +++ +A N     A++ F  MR+EG     F  SS++ +C +LG+ +
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G Q+H LV+K  F  ++ V ++L DMY+K G + DAC+ F+ M  K+ V W +M+ GF 
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           +NGD ++A+     M+      D+  L S LS+C +L  S   + +HA  +K G +    
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF 313

Query: 401 IENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           I NAL + YSK G +  A   F    +   +V+ T+II  Y      ++++  F  +   
Sbjct: 314 IGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRR 373

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P+   F  ++ AC++   +  G +    ++  ++   D    + L D+ G+ GL   
Sbjct: 374 GIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLVDMYGKCGLFDH 432

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +  L   +   P        +G    HG
Sbjct: 433 SIQLFDEIE-NPDEIAWNTLVGVFSQHG 459



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 209/434 (48%), Gaps = 36/434 (8%)

Query: 31  TTTITNAQKHDR--SVLSS--QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLH 86
           T+ IT    + R    LSS  Q+R  G I  +T  A    S  L+     G +Q G Q+H
Sbjct: 145 TSIITGFAHNSRFQEALSSFCQMRIEGEI--ATQFA---LSSVLQACTSLGAIQFGTQVH 199

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG-- 144
             ++K G   +L + + +  +Y KC    D  K F+EM  ++ V W ++I G +  G   
Sbjct: 200 CLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFK 259

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
                + +M+ D+V +D     S L AC        G+ LH+ ILK+GF    F+ +AL 
Sbjct: 260 KALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALT 319

Query: 205 DLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           D+Y K G +  A  VF     C  +V    ++  Y      + A++ F  +R  G++ + 
Sbjct: 320 DMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNE 379

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           FTF+SL+ +C      + G Q+HG V+K +F  D  V+++LVDMY K G  D + ++FD 
Sbjct: 380 FTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDE 439

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           +   + ++WNT+V  F Q+G GR A++    M+     P+ VT  ++L  C         
Sbjct: 440 IENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCS-------- 491

Query: 384 RQVHAYAIKNGVQAFLSIE------------NALINAYSKCGSIAGALQCFGSVK-EPDL 430
              HA  +++G+  F S+E            + +I+   + G +  A     ++  EP++
Sbjct: 492 ---HAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNV 548

Query: 431 VTWTSIIGAYAFHG 444
             W S +GA   HG
Sbjct: 549 FGWCSFLGACKIHG 562


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 322/577 (55%), Gaps = 9/577 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL V  +   L+ G+ +H+ I   GL   + L N ++ +Y KC   D    +F+   
Sbjct: 44  FSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD 103

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQ--ADDIEVG 181
             + V+WN+LI+G +  G N  +     +ML   + L+     S L+AC    +  IE G
Sbjct: 104 ELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECG 163

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-AL 240
           + LH   +K+G  L+  V +AL+D Y K G +EDA ++F  +   ++V++N M++ +  +
Sbjct: 164 KMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQM 223

Query: 241 NCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             + D     A+ +F  M+  GMK   FTFSS++ +C T+ + + G+QIH  + K +   
Sbjct: 224 ETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQS 283

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  +  +LV++Y+ +G+I+D  + F      +VVSW +++VG  QNG     + L  ++L
Sbjct: 284 DEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL 343

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PDE T++ +LS+C +L+      Q+HAYAIK G+  F  I+N+ I  Y+KCG I 
Sbjct: 344 FSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDID 403

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F   K PD+V+W+ +I + A HG +KE++++FE M    + P+ I FL VL ACS
Sbjct: 404 SANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS 463

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           HGGLV EGLRYF +M  D+ I P+ +H  C+ DLLGR G L EA   +     E      
Sbjct: 464 HGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMW 523

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
            + + AC+VH +    K  AE+++ELEP    +Y L+ N+Y           +R +M+D 
Sbjct: 524 RSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDR 583

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              K PG SWIE+   +H+FV+ DRSHP +  +Y  L
Sbjct: 584 GVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQL 620



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 200/370 (54%), Gaps = 9/370 (2%)

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN+V+WN+LISG    G    V   F+   + ++RLD  TF++ L  C +  D+ +G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R +H+ I   G G    ++++L+D+Y KCG ++ AR VF+     D V WN +++ Y   
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQIHGLVIKQSFDLDVL 299
              D  + +   M   G+  + +   S + +CG+  SS +  G+ +HG  +K   DLDV+
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ-----NGDGREAVKLLRD 354
           V T+L+D YAK G+++DA ++F  M   NVV +N M+ GF Q     +    EA+ L  +
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M      P E T +SIL +C ++      +Q+HA   K  +Q+   I NAL+  YS  GS
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           I   L+CF S  + D+V+WTS+I  +  +G  +  + +F ++L    +PD      +LSA
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 475 CSHGGLVSEG 484
           C++   V  G
Sbjct: 361 CANLAAVKSG 370


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 322/577 (55%), Gaps = 9/577 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL V  +   L+ G+ +H+ I   GL   + L N ++ +Y KC   D    +F+   
Sbjct: 123 FSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD 182

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQ--ADDIEVG 181
             + V+WN+LI+G +  G N  +     +ML   + L+     S L+AC    +  IE G
Sbjct: 183 ELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECG 242

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-AL 240
           + LH   +K+G  L+  V +AL+D Y K G +EDA ++F  +   ++V++N M++ +  +
Sbjct: 243 KMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQM 302

Query: 241 NCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             + D     A+ +F  M+  GMK   FTFSS++ +C T+ + + G+QIH  + K +   
Sbjct: 303 ETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQS 362

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  +  +LV++Y+ +G+I+D  + F      +VVSW +++VG  QNG     + L  ++L
Sbjct: 363 DEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL 422

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PDE T++ +LS+C +L+      Q+HAYAIK G+  F  I+N+ I  Y+KCG I 
Sbjct: 423 FSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDID 482

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F   K PD+V+W+ +I + A HG +KE++++FE M    + P+ I FL VL ACS
Sbjct: 483 SANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS 542

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           HGGLV EGLRYF +M  D+ I P+ +H  C+ DLLGR G L EA   +     E      
Sbjct: 543 HGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMW 602

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
            + + AC+VH +    K  AE+++ELEP    +Y L+ N+Y           +R +M+D 
Sbjct: 603 RSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDR 662

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              K PG SWIE+   +H+FV+ DRSHP +  +Y  L
Sbjct: 663 GVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQL 699



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/428 (33%), Positives = 232/428 (54%), Gaps = 9/428 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y++ ++ S + G L  GK  H H++K      L L N +L++Y KC   D  +KLFD M 
Sbjct: 22  YTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMP 81

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+WN+LISG    G    V   F+   + ++RLD  TF++ L  C +  D+ +GR 
Sbjct: 82  KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL 141

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ I   G G    ++++L+D+Y KCG ++ AR VF+     D V WN +++ Y     
Sbjct: 142 IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS 201

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQIHGLVIKQSFDLDVLVA 301
            D  + +   M   G+  + +   S + +CG+  SS +  G+ +HG  +K   DLDV+V 
Sbjct: 202 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 261

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ-----NGDGREAVKLLRDML 356
           T+L+D YAK G+++DA ++F  M   NVV +N M+ GF Q     +    EA+ L  +M 
Sbjct: 262 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 321

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P E T +SIL +C ++      +Q+HA   K  +Q+   I NAL+  YS  GSI 
Sbjct: 322 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 381

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             L+CF S  + D+V+WTS+I  +  +G  +  + +F ++L    +PD      +LSAC+
Sbjct: 382 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 441

Query: 477 HGGLVSEG 484
           +   V  G
Sbjct: 442 NLAAVKSG 449



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 14/340 (4%)

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
           N  PY+  + LD+V     T+  L++   +   +  G+  H  ++K  F    F+ + L+
Sbjct: 7   NPQPYYLGLPLDSV-----TYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLL 61

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
            +Y KCG  + A+++FD +  R++V WN ++S Y         + +F   R+  ++ D F
Sbjct: 62  YMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKF 121

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           TFS+ ++ CG     +LGR IH L+        VL+  SL+DMY K G ID A  VF+  
Sbjct: 122 TFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESA 181

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG---SLSISC 381
              + VSWN+++ G+ + G   E ++LL  ML+     +   L S L +CG   S SI C
Sbjct: 182 DELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIEC 241

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY- 440
             + +H  A+K G+   + +  AL++ Y+K G +  A + F  + +P++V + ++I  + 
Sbjct: 242 -GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 300

Query: 441 ----AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
                    + E++ +F +M S  ++P    F  +L ACS
Sbjct: 301 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACS 340


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 336/581 (57%), Gaps = 8/581 (1%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E T      ++ AL V A+ G   +G Q+H+ ++K GL   + + N ++++Y+KC     
Sbjct: 192 EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRK 251

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQ 174
              LFD+  V+++VTWN++ISG    G ++     F  M L++VRL   +F S+++ C  
Sbjct: 252 ARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNV 233
             ++    +LH  ++K GF  +  + +AL+  Y KC  + DA R+F E     ++V W  
Sbjct: 312 LKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTA 371

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           M+S +  N   + A+ +F+ M+ +G++ + FT+S ++ +   +  S    ++H  V+K +
Sbjct: 372 MISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVHAQVVKTN 427

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
           ++    V T+L+D Y K G +D+A +VF G+  K++V+W+ M+ G+ Q G+   A+K+  
Sbjct: 428 YERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFS 487

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISC-ETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           ++ +G   P+E T +SIL+ C + + S  + +Q H +AIK+ + + L + +AL+  Y+K 
Sbjct: 488 ELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 547

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G I  A + F   +E DLV+W S+I  YA HG + ++++VF++M    V+ DS+ F+ V 
Sbjct: 548 GHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVF 607

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +AC+H GLV EG +YF++M+ D  I P  EH +C+ DL  R G L +A  ++ +MP    
Sbjct: 608 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAG 667

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           S      + AC+VH    L + AAEK++ + P     Y L+SN+YA    W + A++RK+
Sbjct: 668 STIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKL 727

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M +    K PG SWIE+  + + F++ DRSHP    +Y  L
Sbjct: 728 MNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKL 768



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/416 (32%), Positives = 219/416 (52%), Gaps = 7/416 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +S  LKVSA       G+QLH   +K G  + +S+   ++  Y+K   F D   +FDE
Sbjct: 98  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDE 157

Query: 124 MRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M+ RN+VTW TLISG      N  V   F RM  +  + +  TF + L    +      G
Sbjct: 158 MKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG 217

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++H+ ++K G      VS++L++LY KCG V  AR +FD+   + +V WN M+S YA N
Sbjct: 218 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 277

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            L   A+ +F  MRL  ++    +F+S++  C  L   +   Q+H  V+K  F  D  + 
Sbjct: 278 GLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR 337

Query: 302 TSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           T+L+  Y+K   + DA R+F       NVVSW  M+ GF QN    EAV L  +M +   
Sbjct: 338 TALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGV 397

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+E T + IL++   +S S    +VHA  +K   +   ++  AL++AY K G +  A +
Sbjct: 398 RPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAK 453

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            F  +   D+V W++++  YA  G ++ +I++F ++    V+P+   F  +L+ C+
Sbjct: 454 VFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA 509



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 190/363 (52%), Gaps = 13/363 (3%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLD----NVRLDHITFNSLLRACVQA 175
           LFD+   R+  ++ +L+ G    G   T    R+ L+     + +D   F+S+L+     
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGR--TQEATRLFLNIQHLGMEMDCSIFSSVLKVSATL 110

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D   GR+LH   +K GF  +  V ++LVD Y K    +D R VFDE+  R++V W  ++
Sbjct: 111 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLI 170

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S YA N L +  + +F  M+ EG + + FTF++ +      G    G Q+H +V+K   D
Sbjct: 171 SGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD 230

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
             + V+ SL+++Y K GN+  A  +FD    K+VV+WN+M+ G+  NG   EA+ +   M
Sbjct: 231 KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM 290

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                   E + ASI+  C +L     T Q+H   +K G     +I  AL+ AYSKC ++
Sbjct: 291 RLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAM 350

Query: 416 AGALQCFGSVKEP----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
             AL+ F   KE     ++V+WT++I  +  +   +E++ +F +M    VRP+   +  +
Sbjct: 351 LDALRLF---KETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVI 407

Query: 472 LSA 474
           L+A
Sbjct: 408 LTA 410



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 150/312 (48%), Gaps = 15/312 (4%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           N  L+ C+ A+  E+G       LK  F + CF +++   LY        A  +FD+   
Sbjct: 15  NFKLKFCIYAN--ELGN------LKPNFRIYCFGAASSSRLYY-------AHNLFDKSPD 59

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           RD   +  ++  ++ +     A  +F  ++  GM+ D   FSS++    TL     GRQ+
Sbjct: 60  RDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQL 119

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H   IK  F  DV V TSLVD Y K  N  D   VFD M  +NVV+W T++ G+ +N   
Sbjct: 120 HCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLN 179

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            E + L   M      P+  T A+ L       +     QVH   +KNG+   + + N+L
Sbjct: 180 EEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSL 239

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           IN Y KCG++  A   F   +   +VTW S+I  YA +GL  E++ +F  M  + VR   
Sbjct: 240 INLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSE 299

Query: 466 IAFLEVLSACSH 477
            +F  ++  C++
Sbjct: 300 SSFASIIKLCAN 311



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +FD    ++  S+ +++ GF ++G  +EA +L  ++       D    +S+L    +
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      RQ+H   IK G    +S+  +L++ Y K  +       F  +KE ++VTWT++
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           I  YA + L++E + +F +M     +P+S  F   L   +  G+   GL+   +++ +
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 227


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/613 (32%), Positives = 343/613 (55%), Gaps = 9/613 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           + RN G + +S        S  L+     G +++G  +H  I K+G+   + + N +L +
Sbjct: 206 RFRNLGVVPDSYT-----MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 260

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y K     D  ++FD+M +R+ V+WNT+I G    G        F  M+ +  + D +T 
Sbjct: 261 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTI 319

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S+L+AC    D+E G+ +H +++  G+  +   S+ L+++Y KCG +  ++ VF  + C
Sbjct: 320 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 379

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +D V WN M++ Y  N   D A+ +F +M+ + +K D  T+  L++    LG   LG+++
Sbjct: 380 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKEL 438

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  + K  F+ +++V+ +LVDMYAK G + D+ +VF+ M A+++++WNT++     + D 
Sbjct: 439 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDC 498

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
              ++++  M      PD  T+ SIL  C  L+   + +++H    K G+++ + + N L
Sbjct: 499 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVL 558

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I  YSKCGS+  + Q F  +K  D+VTWT++I A   +G  K+++  F +M +  + PD 
Sbjct: 559 IEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDH 618

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           +AF+ ++ ACSH GLV EGL YF+ M  DY I P  EHY C+ DLL R  LL +A D + 
Sbjct: 619 VAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFIL 678

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           SMP++P S   GA + AC++ G   +A+  +E+++EL P     Y LVSN+YA+   W  
Sbjct: 679 SMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQ 738

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
           V  +RK ++     K PGCSW+EI  +++ F +  +   Q   +  +L  + GLM +   
Sbjct: 739 VRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGY 798

Query: 646 SGHCNVLDKEMDE 658
             +   +  ++DE
Sbjct: 799 IANLQFVLHDIDE 811



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 228/425 (53%), Gaps = 11/425 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S  + +S   +  A      Q  +LHS I+ LGL + +    +++  Y     F D    
Sbjct: 11  SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH---FRDPTSS 67

Query: 121 FDEMRV----RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
           F   R+     N+  WN++I  + + G        +       ++ D  TF S++ AC  
Sbjct: 68  FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 127

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
             D E+ + +H  +L +GFG + ++ +AL+D+Y +   ++ AR+VF+E+  RD+V WN +
Sbjct: 128 LLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSL 187

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +S Y  N   + A+ ++   R  G+  D +T SS++ +CG LGS + G  IHGL+ K   
Sbjct: 188 ISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI 247

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
             DV+V   L+ MY K   + D  R+FD M  ++ VSWNTM+ G+ Q G   E++KL  +
Sbjct: 248 KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 307

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M+   F PD +T+ SIL +CG L      + VH Y I +G +   +  N LIN Y+KCG+
Sbjct: 308 MVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 366

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  + + F  +K  D V+W S+I  Y  +G   E++++F KM+   V+PDS+ ++ +LS 
Sbjct: 367 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSM 425

Query: 475 CSHGG 479
            +  G
Sbjct: 426 STQLG 430



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 1/220 (0%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD-GM 324
           FSS+  +  +  ++    ++H L+I       V+ +  L+  YA   +   +  VF    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
            + NV  WN+++     NG   EA+ L  +  +    PD  T  S++++C  L      +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            +H   +  G  + L I NALI+ Y +   +  A + F  +   D+V+W S+I  Y  +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
              E++E++ +  +  V PDS     VL AC   G V EG
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/577 (36%), Positives = 327/577 (56%), Gaps = 14/577 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +Q+H+ +    + N +   N +LH ++  K F++   LF ++   N   +N +I G+   
Sbjct: 48  QQIHTQM----IINAIHKPNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTT 103

Query: 143 GG--NVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
               N+T  F   + D  +R ++ T+  +  AC     +  G+  HS +LK G   +  V
Sbjct: 104 WQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHV 163

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
             +L+ +Y +CG +  ARRVFDE+  +DLV WN M+S Y+       A+ +F  MR  G 
Sbjct: 164 RHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGF 223

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  S++ +CG LG   LG  I G V++   DL+  V ++L+ MY K G++  A R
Sbjct: 224 EPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARR 283

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VFD M  K+VV+WN M+ G+ QNG   EA+ L   M +    PD++TL  +LS+C S+  
Sbjct: 284 VFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGA 343

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               + +  YA + G+Q  + +  ALI+ Y+KCGS+  AL+ F  + + + V+W ++I A
Sbjct: 344 LDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISA 403

Query: 440 YAFHGLSKESIEVFEKMLSH--AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            AFHG  +ES+ +F++M     AVRP+ I+F+ VLSAC H GLV EG + F+LM S + +
Sbjct: 404 LAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGL 463

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
           +P  EH++C+ DLL R G + EA+D +  MP +P    LGA +GAC+   ++ +++    
Sbjct: 464 VPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMH 523

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            LLE+EP    NY + S ++A+ + W D AR+R +MR     K PGCSWIEI  ++H F 
Sbjct: 524 MLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFH 583

Query: 618 SSDRSHPQAVHMYAMLCTVFGLM-EENNVSGHCNVLD 653
           + D  H  +  M    C V  L+ EE  V G+   +D
Sbjct: 584 AGDVLHFISQDM----CQVINLLNEEMKVEGYGPKVD 616



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 213/385 (55%), Gaps = 10/385 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+  HS ++K GLC    +++ ++ +Y +C       ++FDE+  +++V+WN++ISG
Sbjct: 142 LNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISG 201

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G  G+    F  M       D +T  S+L AC    D+ +G  +  F+++    LN
Sbjct: 202 YSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLN 261

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV SAL+ +YGKCG +  ARRVFD ++ +D+V WN M++ YA N + D AI +F+ MR 
Sbjct: 262 SFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRE 321

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+  D  T   ++++C ++G+   G+ +     ++    D+ V+T+L+DMYAK G++DD
Sbjct: 322 SGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDD 381

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSSC 374
           A RVF+ M  KN VSWN M+     +G  +E++ L + M +  G+  P++++   +LS+C
Sbjct: 382 ALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSAC 441

Query: 375 GSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVT 432
               +  E RQ+      + G+   +   + +++  ++ G +  A      + E PD V 
Sbjct: 442 VHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVV 501

Query: 433 WTSIIGAYAFHGLSKESIEVFEKML 457
             +++GA       + +++V E+++
Sbjct: 502 LGALLGACQ----KRRNVDVSERVM 522



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 7/153 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L  GK L ++  + GL N + +   ++ +Y KC + DD  ++F++M  +N 
Sbjct: 335 LSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNE 394

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDN--VRLDHITFNSLLRACVQADDIEVGRRLH 185
           V+WN +IS +   G        F+RM  +   VR + I+F  +L ACV A  ++ GR+L 
Sbjct: 395 VSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLF 454

Query: 186 SFILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
             ++   FGL   +   S +VDL  + G V +A
Sbjct: 455 D-LMSSSFGLVPKIEHHSCMVDLLARAGHVHEA 486


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/613 (32%), Positives = 343/613 (55%), Gaps = 9/613 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           + RN G + +S        S  L+     G +++G  +H  I K+G+   + + N +L +
Sbjct: 265 RFRNLGVVPDSYT-----MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 319

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y K     D  ++FD+M +R+ V+WNT+I G    G        F  M+ +  + D +T 
Sbjct: 320 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTI 378

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S+L+AC    D+E G+ +H +++  G+  +   S+ L+++Y KCG +  ++ VF  + C
Sbjct: 379 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 438

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +D V WN M++ Y  N   D A+ +F +M+ + +K D  T+  L++    LG   LG+++
Sbjct: 439 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKEL 497

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  + K  F+ +++V+ +LVDMYAK G + D+ +VF+ M A+++++WNT++     + D 
Sbjct: 498 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDC 557

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
              ++++  M      PD  T+ SIL  C  L+   + +++H    K G+++ + + N L
Sbjct: 558 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVL 617

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I  YSKCGS+  + Q F  +K  D+VTWT++I A   +G  K+++  F +M +  + PD 
Sbjct: 618 IEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDH 677

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           +AF+ ++ ACSH GLV EGL YF+ M  DY I P  EHY C+ DLL R  LL +A D + 
Sbjct: 678 VAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFIL 737

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           SMP++P S   GA + AC++ G   +A+  +E+++EL P     Y LVSNVYA+   W  
Sbjct: 738 SMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQ 797

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
           V  +RK ++     K PGCSW+EI  +++ F +  +   Q   +  +L  + GLM +   
Sbjct: 798 VRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGY 857

Query: 646 SGHCNVLDKEMDE 658
             +   +  ++DE
Sbjct: 858 IANLQFVLHDIDE 870



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 235/442 (53%), Gaps = 13/442 (2%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           + S  ++    +HE   S  + +S   +  A      Q  +LHS I+ LGL + +    +
Sbjct: 55  LFSRVMKTLRVLHEC--SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAK 112

Query: 104 VLHVYVKCKAFDDMEKLFDEMRV----RNIVTWNTLISGIINCG--GNVTPYFRRMLLDN 157
           ++  Y     F D    F   R+     N+  WN++I  + + G        +       
Sbjct: 113 LIAKYAH---FRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIR 169

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           ++ D  TF S++ AC    D E+ + +H  +L +GFG + ++ +AL+D+Y +   ++ AR
Sbjct: 170 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKAR 229

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           +VF+E+  RD+V WN ++S Y  N   + A+ ++   R  G+  D +T SS++ +CG LG
Sbjct: 230 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG 289

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           S + G  IHGL+ K     DV+V   L+ MY K   + D  R+FD M  ++ VSWNTM+ 
Sbjct: 290 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 349

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G+ Q G   E++KL  +M+   F PD +T+ SIL +CG L      + VH Y I +G + 
Sbjct: 350 GYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 408

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
             +  N LIN Y+KCG++  + + F  +K  D V+W S+I  Y  +G   E++++F KM+
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMM 467

Query: 458 SHAVRPDSIAFLEVLSACSHGG 479
              V+PDS+ ++ +LS  +  G
Sbjct: 468 KTDVKPDSVTYVMLLSMSTQLG 489



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 1/220 (0%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD-GM 324
           FSS+  +  +  ++    ++H L+I       V+ +  L+  YA   +   +  VF    
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
            + NV  WN+++     NG   EA+ L  +  +    PD  T  S++++C  L      +
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            +H   +  G  + L I NALI+ Y +   +  A + F  +   D+V+W S+I  Y  +G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
              E++E++ +  +  V PDS     VL AC   G V EG
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/569 (35%), Positives = 315/569 (55%), Gaps = 2/569 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  LK  A  G L+ G+ +HS  +++G      +   ++ +Y KC    D  K+F  +  
Sbjct: 334 STVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIED 393

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++V+W+ +I+ +   G +      F+RM    V  +  T  SL+ A     D+  G  +
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ + K GF  +  V +ALV +Y K G V+D  RVF+    RDL+ WN ++S +  N   
Sbjct: 454 HACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETC 513

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D  + +FN M  EG   + +TF S++ SC +L    LG+Q+H  ++K S D +  V T+L
Sbjct: 514 DTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTAL 573

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           VDMYAKN  ++DA  +F+ +  +++ +W  +V G+ Q+G G +AVK    M +    P+E
Sbjct: 574 VDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNE 633

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            TLAS LS C  ++     RQ+H+ AIK G    + + +AL++ Y+KCG +  A   F  
Sbjct: 634 FTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDG 693

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D V+W +II  Y+ HG   ++++ FE ML     PD + F+ VLSACSH GL+ EG
Sbjct: 694 LVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEG 753

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            ++FN +   Y I P  EHY C+ D+LGR G   E    +  M +          +GACK
Sbjct: 754 KKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACK 813

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +HG+I   + AA KL ELEP    NY L+SN++A++  W DV  +R +M      K PGC
Sbjct: 814 MHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGC 873

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SW+E+ G++H F+S D SHP+   ++  L
Sbjct: 874 SWVEVNGQVHVFLSHDGSHPKIREIHLKL 902



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 246/498 (49%), Gaps = 4/498 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ ALK  +    L+ GKQ+H+  +K+G  + L + + ++ +Y KC      E++F  M 
Sbjct: 232 YATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP 291

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N V+WN L++G    G    V   F RM    +     T +++L+ C  + ++  G+ 
Sbjct: 292 KQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQI 351

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS  +++G  L+ F+S  LVD+Y KCG   DA +VF  +   D+V W+ +++C      
Sbjct: 352 VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ 411

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A  VF  MR  G+  + FT +SLV++   LG    G  IH  V K  F+ D  V  +
Sbjct: 412 SREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNA 471

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LV MY K G++ D CRVF+  T ++++SWN ++ GF  N      +++   ML   F P+
Sbjct: 472 LVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPN 531

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  SIL SC SLS     +QVHA  +KN +     +  AL++ Y+K   +  A   F 
Sbjct: 532 MYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN 591

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + DL  WT I+  YA  G  +++++ F +M    V+P+       LS CS    +  
Sbjct: 592 RLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS 651

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +  ++ I       D    + L D+  + G  VE  +++    +   + +    I   
Sbjct: 652 GRQLHSMAIKAGQS-GDMFVASALVDMYAKCG-CVEDAEVVFDGLVSRDTVSWNTIICGY 709

Query: 544 KVHGSIGLAKWAAEKLLE 561
             HG  G A  A E +L+
Sbjct: 710 SQHGQGGKALKAFEAMLD 727



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/416 (31%), Positives = 223/416 (53%), Gaps = 8/416 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L+  A  G L +GK +H  ++K G+     L N +++VY KC + +   K+F E+ 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W  LI+G +    G      F  M  + V  +  T+ + L+AC    D+E G++
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  +KVG   + FV SALVDLY KCG +  A RVF  +  ++ V WN +++ +A   +
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQ--M 308

Query: 244 GDGAIAVFNLM-RLEGMKGDY--FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           GD A  V NL  R+ G + ++  FT S+++  C   G+ + G+ +H L I+   +LD  +
Sbjct: 309 GD-AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFI 367

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +  LVDMY+K G   DA +VF  +   +VVSW+ ++    Q G  REA ++ + M     
Sbjct: 368 SCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGV 427

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P++ TLAS++S+   L        +HA   K G +   ++ NAL+  Y K GS+    +
Sbjct: 428 IPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCR 487

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            F +    DL++W +++  +  +      + +F +ML+    P+   F+ +L +CS
Sbjct: 488 VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS 543



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 172/315 (54%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++ +LR C    D+  G+ +H  ++K G   +  + ++LV++Y KCG    A +VF E+ 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+V W  +++ +     G GA+ +F  MR EG++ + FT+++ + +C      + G+Q
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H   IK     D+ V ++LVD+YAK G +  A RVF  M  +N VSWN ++ GF Q GD
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             + + L   M        + TL+++L  C +       + VH+ AI+ G +    I   
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ YSKCG    AL+ F  +++PD+V+W++II      G S+E+ EVF++M    V P+
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 465 SIAFLEVLSACSHGG 479
                 ++SA +  G
Sbjct: 431 QFTLASLVSAATDLG 445



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 9/323 (2%)

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           KG    +S ++ +C + G    G+ IHG VIK   + D  +  SLV++YAK G+ + AC+
Sbjct: 125 KGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK 184

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  +  ++VVSW  ++ GF   G G  AV L  +M +     +E T A+ L +C S+ +
Sbjct: 185 VFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKAC-SMCL 243

Query: 380 SCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
             E  +QVHA AIK G  + L + +AL++ Y+KCG +  A + F  + + + V+W +++ 
Sbjct: 244 DLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLN 303

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            +A  G +++ + +F +M    +         VL  C++ G +  G    +L I     L
Sbjct: 304 GFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCEL 363

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
            D     CL D+  + GL  +A  +   +  +P   +  A I      G    ++ AAE 
Sbjct: 364 -DEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITCLDQKGQ---SREAAEV 418

Query: 559 LLELEPSK--PVNYALVSNVYAS 579
              +  S   P  + L S V A+
Sbjct: 419 FKRMRHSGVIPNQFTLASLVSAA 441


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 335/603 (55%), Gaps = 45/603 (7%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDM-------------- 117
           L  GK LHS  +K  +       N  + +Y KC       KAF D+              
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 118 ----------EKLFDEMRVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDH 162
                      +LFD++   ++V++NTLIS   +CG            R M LD   +D 
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD---MDX 140

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
            T ++++ AC   DD+ +  +LHS  +  GF     V++AL+  YGK G ++DA+RVF  
Sbjct: 141 FTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYG 198

Query: 223 VL-CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           +   RD V WN M+  Y  +  G  A+ +F  M   G+  D FT +S++ +   L     
Sbjct: 199 MGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSG 258

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           G Q HG +IK  F  +  V + L+D+Y+K  G + D  +VF+ +T  ++V WNTMV G+ 
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 341 QNGDGRE-AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA-F 398
           QN +  E A++  R M    + P++ +   ++S+C +LS   + +Q+H+ A+K+ + +  
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           +S++NALI  YSKCG++  A + F  + E + V+  S+I  YA HG+  ES+ +F+ ML 
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             + P SI F+ VLSAC+H G V EG  YFN+M   ++I P++EHY+C+ DLLGR G L 
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLS 498

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           EA +L+A MP  P S    + +GAC+ HG+I LA  AA ++L+LEPS    Y ++SN+YA
Sbjct: 499 EAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYA 558

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
           S   W +VA +RK MRD    K PGCSWIE+   IH FV+ D SHP    +Y  L  + G
Sbjct: 559 SAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSG 618

Query: 639 LME 641
            M+
Sbjct: 619 KMK 621



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 55/439 (12%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR------ 218
           F  LL+ C+   D+  G+ LHS  +K     + + S+  + LY KCG +  AR+      
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 219 -------------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                                    +FD++   DLV +N ++S YA       A+ +F+ 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 254 MRLEGMKGDYFTFSSLVNSC----GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           MR  G+  D FT S+++ +C    G +G      Q+H + +   FD  V V  +L+  Y 
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIG------QLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 310 KNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           KNG++DDA RVF GM   ++ VSWN+M+V +GQ+ +G +A+ L ++M++     D  TLA
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-GSIAGALQCFGSVKE 427
           S+L++   L       Q H   IK G      + + LI+ YSKC G ++   + F  + E
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE 304

Query: 428 PDLVTWTSIIGAYAFH-GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           PDLV W +++  Y+ +    ++++E F +M     RP+  +F+ V+SACS+    S+G +
Sbjct: 305 PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 487 YFNLMI-SDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
             +L + SD   +P +       L  +  + G L +A  L   M  E  + +L + I   
Sbjct: 365 IHSLALKSD---IPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGY 420

Query: 544 KVHG----SIGLAKWAAEK 558
             HG    S+ L +W  E+
Sbjct: 421 AQHGIEMESLHLFQWMLER 439


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 331/589 (56%), Gaps = 6/589 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +  G+Q+H+ ++++G    +   N ++ +YVK    D    +F++M   ++V+WN LISG
Sbjct: 218 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +        +M    +  +    +S+L+AC  A   ++GR++H F++K     +
Sbjct: 278 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 337

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            ++   LVD+Y K  F++DA +VFD +  RDL+LWN ++S  +     D A ++F  +R 
Sbjct: 338 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 397

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+  +  T ++++ S  +L ++   RQ+H L  K  F  D  V   L+D Y K   + D
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSD 457

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A RVF+  ++ ++++  +M+    Q   G  A+KL  +ML+    PD   L+S+L++C S
Sbjct: 458 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           LS   + +QVHA+ IK    +     NAL+  Y+KCGSI  A   F S+ E  +V+W+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG  K ++E+F +M+   + P+ I    VL AC+H GLV E  RYFN M   + 
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I    EHY+C+ DLLGR G L +A +L+ SMP +  +   GA +GA +VH    L K AA
Sbjct: 638 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAA 697

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           EKL  LEP K   + L++N YAS   W +VA++RK+M+D+   K P  SW+E+  ++HTF
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTF 757

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTL 661
           +  D+SHP    +Y+ L  +  LM +     NV    + LD+   E  L
Sbjct: 758 IVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLL 806



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 243/471 (51%), Gaps = 5/471 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISG 138
           Q G Q+H+  M  G  + + + N ++ +Y      DD  ++FDE    RN V+WN L+S 
Sbjct: 117 QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +     G+    F  M+   ++     F+ ++ AC  + +I+ GR++H+ ++++G+  +
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 236

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F ++ALVD+Y K G V+ A  +F+++   D+V WN ++S   LN     AI +   M+ 
Sbjct: 237 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 296

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+  + F  SS++ +C   G+  LGRQIHG +IK + D D  +   LVDMYAKN  +DD
Sbjct: 297 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M+ ++++ WN ++ G    G   EA  +   + +     +  TLA++L S  S
Sbjct: 357 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 416

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L  +  TRQVHA A K G      + N LI++Y KC  ++ A++ F      D++  TS+
Sbjct: 417 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 476

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I A +     + +I++F +ML   + PD      +L+AC+      +G +    +I    
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK-RQ 535

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            + D+     L     + G + +A    +S+P E    +  A IG    HG
Sbjct: 536 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 240/481 (49%), Gaps = 40/481 (8%)

Query: 49  LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVY 108
           +R++GTI           SQ L   A    L  G  LH++++K G     SL+N ++  Y
Sbjct: 1   MRSAGTI-----------SQQLTRYAAAQALLPGAHLHANLLKSGFL--ASLRNHLISFY 47

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
            KC+      ++FDE+     V+W++L++   N G   +    F  M  + V  +     
Sbjct: 48  SKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALP 107

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC- 225
            +L+ CV   D ++G ++H+  +  GFG + FV++ALV +YG  GF++DARRVFDE    
Sbjct: 108 VVLK-CVP--DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSE 164

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R+ V WN ++S Y  N     AI VF  M   G++   F FS +VN+C    +   GRQ+
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H +V++  ++ DV  A +LVDMY K G +D A  +F+ M   +VVSWN ++ G   NG  
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             A++LL  M      P+   L+SIL +C         RQ+H + IK    +   I   L
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA-----------FHGLSKESIEVFE 454
           ++ Y+K   +  A++ F  +   DL+ W ++I   +           F+GL KE + V  
Sbjct: 345 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 404

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI---LPDSE-HYTCLTDL 510
             L+  ++  S A LE  SA      ++E + +    I D H+   L DS    +CL+D 
Sbjct: 405 TTLAAVLK--STASLEAASATRQVHALAEKIGF----IFDAHVVNGLIDSYWKCSCLSDA 458

Query: 511 L 511
           +
Sbjct: 459 I 459



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 6/272 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK +A        +Q+H+   K+G      + N ++  Y KC    D  ++F+E    +I
Sbjct: 411 LKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 470

Query: 130 VTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           +   ++I+ +  C  G      F  ML   +  D    +SLL AC      E G+++H+ 
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K  F  + F  +ALV  Y KCG +EDA   F  +  R +V W+ M+   A +  G  A
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLV 305
           + +F  M  EG+  ++ T +S++ +C   G     ++     +K+ F +D      + ++
Sbjct: 591 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN-SMKEMFGIDRTEEHYSCMI 649

Query: 306 DMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           D+  + G +DDA  + + M  + N   W  ++
Sbjct: 650 DLLGRAGKLDDAMELVNSMPFQANASVWGALL 681



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 5/161 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A     +QGKQ+H+H++K    +     N +++ Y KC + +D E  F  +  
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R +V+W+ +I G+     G      F RM+ + +  +HIT  S+L AC  A  ++  +R 
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 185 HSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV 223
            +  +K  FG++      S ++DL G+ G ++DA  + + +
Sbjct: 629 FN-SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM 668


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 335/603 (55%), Gaps = 45/603 (7%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDM-------------- 117
           L  GK LHS  +K  +       N  + +Y KC       KAF D+              
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 118 ----------EKLFDEMRVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDH 162
                      +LFD++   ++V++NTLIS   +CG            R M LD   +D 
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD---MDG 140

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
            T ++++ AC   DD+ +  +LHS  +  GF     V++AL+  YGK G ++DA+RVF  
Sbjct: 141 FTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYG 198

Query: 223 VL-CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           +   RD V WN M+  Y  +  G  A+ +F  M   G+  D FT +S++ +   L     
Sbjct: 199 MGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSG 258

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           G Q HG +IK  F  +  V + L+D+Y+K  G + D  +VF+ +T  ++V WNTMV G+ 
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 341 QNGDGRE-AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA-F 398
           QN +  E A++  R M    + P++ +   ++S+C +LS   + +Q+H+ A+K+ + +  
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           +S++NALI  YSKCG++  A + F  + E + V+  S+I  YA HG+  ES+ +F+ ML 
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             + P SI F+ VLSAC+H G V EG  YFN+M   ++I P++EHY+C+ DLLGR G L 
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLS 498

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           EA +L+A MP  P S    + +GAC+ HG+I LA  AA ++L+LEPS    Y ++SN+YA
Sbjct: 499 EAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYA 558

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
           S   W +VA +RK MRD    K PGCSWIE+   IH FV+ D SHP    +Y  L  + G
Sbjct: 559 SAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSG 618

Query: 639 LME 641
            M+
Sbjct: 619 KMK 621



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 55/439 (12%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR------ 218
           F  LL+ C+   D+  G+ LHS  +K     + + S+  + LY KCG +  AR+      
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 219 -------------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                                    +FD++   DLV +N ++S YA       A+ +F+ 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 254 MRLEGMKGDYFTFSSLVNSC----GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           MR  G+  D FT S+++ +C    G +G      Q+H + +   FD  V V  +L+  Y 
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIG------QLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 310 KNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           KNG++DDA RVF GM   ++ VSWN+M+V +GQ+ +G +A+ L ++M++     D  TLA
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-GSIAGALQCFGSVKE 427
           S+L++   L       Q H   IK G      + + LI+ YSKC G ++   + F  + E
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE 304

Query: 428 PDLVTWTSIIGAYAFH-GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           PDLV W +++  Y+ +    ++++E F +M     RP+  +F+ V+SACS+    S+G +
Sbjct: 305 PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 487 YFNLMI-SDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
             +L + SD   +P +       L  +  + G L +A  L   M  E  + +L + I   
Sbjct: 365 IHSLALKSD---IPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGY 420

Query: 544 KVHG----SIGLAKWAAEK 558
             HG    S+ L +W  E+
Sbjct: 421 AQHGIEMESLHLFQWMLER 439


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/570 (36%), Positives = 312/570 (54%), Gaps = 4/570 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  LK  A  G L++GK LH+  ++ G      L   ++ +Y KC    D  K+F ++R 
Sbjct: 55  STVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRN 114

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++V W+ +I+G+   G        F  M     R +  T +SL+       D+  G+ +
Sbjct: 115 PDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSI 174

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALNCL 243
           H  I K GF  +  VS+ L+ +Y K   VED  +VF+ +   DLV WN ++S  Y     
Sbjct: 175 HGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTC 234

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G G   +F  M LEG K + FTF S++ SC +L   + G+Q+H  +IK S D D  V T+
Sbjct: 235 GRGP-RIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA 293

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMYAK   ++DA   FD +  +++ SW  ++ G+ Q     +AVK  R M +    P+
Sbjct: 294 LVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPN 353

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           E TLAS LS C  ++     RQ+HA A+K G    + + +AL++ Y KCG +  A   F 
Sbjct: 354 EYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFK 413

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D+V+W +II  Y+ HG  ++++E F  MLS  + PD   F+ VLSACS  GLV E
Sbjct: 414 GLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEE 473

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G + F+ M   Y I P  EHY C+ D+LGR G   E    +  M + P S      +GAC
Sbjct: 474 GKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGAC 533

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+HG++   + AA+KL E+EP    +Y L+SN++AS+  W DV  +R +M      K PG
Sbjct: 534 KLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPG 593

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           CSW+E+ G++H F+S D SHP+   +YA L
Sbjct: 594 CSWVEVDGQVHVFLSQDGSHPKIREIYAKL 623



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 208/405 (51%), Gaps = 3/405 (0%)

Query: 118 EKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           E+LF  M  +N V+WN L++G   +  G  V   F +M     +    T +++L+ C   
Sbjct: 5   ERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANT 64

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
             +  G+ LH+  L+ G  ++ F+  +LVD+Y KCG V DA +VF ++   D+V W+ M+
Sbjct: 65  GSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMI 124

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           +       G  A  +F+LMR +G + + FT SSLV++   +G  + G+ IHG + K  F+
Sbjct: 125 TGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE 184

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D LV+  L+ MY K+  ++D  +VF+ MT  ++VSWN ++ GF  +       ++   M
Sbjct: 185 SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQM 244

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L   F P+  T  S+L SC SL      +QVHA+ IKN       +  AL++ Y+K   +
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCL 304

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F  +   D+ +WT II  YA    ++++++ F +M    ++P+       LS C
Sbjct: 305 EDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGC 364

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           SH   +  G +   + +   H   D    + L DL G+ G +  A
Sbjct: 365 SHMATLENGRQLHAVAVKAGH-FGDIFVGSALVDLYGKCGCMEHA 408



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 139/266 (52%), Gaps = 4/266 (1%)

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG--AIAVFNLMRLEGMKGDYFTFSSLV 270
           +E A R+F  +  ++ V WN +++ YA   LGDG   + +F  M+    K   FT S+++
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQ--LGDGKKVLKLFCKMKECETKFSKFTLSTVL 58

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
             C   GS + G+ +H L ++   ++D  +  SLVDMY+K G + DA +VF  +   +VV
Sbjct: 59  KGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVV 118

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           +W+ M+ G  Q G G+EA +L   M +    P++ TL+S++S+  ++      + +H   
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
            K G ++   + N LI  Y K   +    + F ++  PDLV+W +++  +          
Sbjct: 179 CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGP 238

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACS 476
            +F +ML    +P+   F+ VL +CS
Sbjct: 239 RIFYQMLLEGFKPNMFTFISVLRSCS 264


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 331/589 (56%), Gaps = 6/589 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +  G+Q+H+ ++++G    +   N ++ +YVK    D    +F++M   ++V+WN LISG
Sbjct: 125 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 184

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +        +M    +  +    +S+L+AC  A   ++GR++H F++K     +
Sbjct: 185 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 244

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            ++   LVD+Y K  F++DA +VFD +  RDL+LWN ++S  +     D A ++F  +R 
Sbjct: 245 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 304

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+  +  T ++++ S  +L ++   RQ+H L  K  F  D  V   L+D Y K   + D
Sbjct: 305 EGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSD 364

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A RVF+  ++ ++++  +M+    Q   G  A+KL  +ML+    PD   L+S+L++C S
Sbjct: 365 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 424

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           LS   + +QVHA+ IK    +     NAL+  Y+KCGSI  A   F S+ E  +V+W+++
Sbjct: 425 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 484

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG  K ++E+F +M+   + P+ I    VL AC+H GLV E  RYFN M   + 
Sbjct: 485 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 544

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I    EHY+C+ DLLGR G L +A +L+ SMP +  +   GA +GA +VH    L K AA
Sbjct: 545 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAA 604

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           EKL  LEP K   + L++N YAS   W +VA++RK+M+D+   K P  SW+E+  ++HTF
Sbjct: 605 EKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTF 664

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTL 661
           +  D+SHP    +Y+ L  +  LM +     NV    + LD+   E  L
Sbjct: 665 IVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLL 713



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 243/471 (51%), Gaps = 5/471 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISG 138
           Q G Q+H+  M  G  + + + N ++ +Y      DD  ++FDE    RN V+WN L+S 
Sbjct: 24  QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +     G+    F  M+   ++     F+ ++ AC  + +I+ GR++H+ ++++G+  +
Sbjct: 84  YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 143

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F ++ALVD+Y K G V+ A  +F+++   D+V WN ++S   LN     AI +   M+ 
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+  + F  SS++ +C   G+  LGRQIHG +IK + D D  +   LVDMYAKN  +DD
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 263

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M+ ++++ WN ++ G    G   EA  +   + +     +  TLA++L S  S
Sbjct: 264 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 323

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L  +  TRQVHA A K G      + N LI++Y KC  ++ A++ F      D++  TS+
Sbjct: 324 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 383

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I A +     + +I++F +ML   + PD      +L+AC+      +G +    +I    
Sbjct: 384 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK-RQ 442

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            + D+     L     + G + +A    +S+P E    +  A IG    HG
Sbjct: 443 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 492



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 182/351 (51%), Gaps = 22/351 (6%)

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMV 235
           D ++G ++H+  +  GFG + FV++ALV +YG  GF++DARRVFDE    R+ V WN ++
Sbjct: 22  DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 81

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S Y  N     AI VF  M   G++   F FS +VN+C    +   GRQ+H +V++  ++
Sbjct: 82  SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE 141

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            DV  A +LVDMY K G +D A  +F+ M   +VVSWN ++ G   NG    A++LL  M
Sbjct: 142 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 P+   L+SIL +C         RQ+H + IK    +   I   L++ Y+K   +
Sbjct: 202 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 261

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYA-----------FHGLSKESIEVFEKMLSHAVRPD 464
             A++ F  +   DL+ W ++I   +           F+GL KE + V    L+  ++  
Sbjct: 262 DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK-- 319

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI---LPDSE-HYTCLTDLL 511
           S A LE  SA      ++E + +    I D H+   L DS    +CL+D +
Sbjct: 320 STASLEAASATRQVHALAEKIGF----IFDAHVVNGLIDSYWKCSCLSDAI 366



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 6/272 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK +A        +Q+H+   K+G      + N ++  Y KC    D  ++F+E    +I
Sbjct: 318 LKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 377

Query: 130 VTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           +   ++I+ +  C  G      F  ML   +  D    +SLL AC      E G+++H+ 
Sbjct: 378 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 437

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K  F  + F  +ALV  Y KCG +EDA   F  +  R +V W+ M+   A +  G  A
Sbjct: 438 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 497

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLV 305
           + +F  M  EG+  ++ T +S++ +C   G     ++     +K+ F +D      + ++
Sbjct: 498 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN-SMKEMFGIDRTEEHYSCMI 556

Query: 306 DMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           D+  + G +DDA  + + M  + N   W  ++
Sbjct: 557 DLLGRAGKLDDAMELVNSMPFQANASVWGALL 588



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 5/154 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A     +QGKQ+H+H++K    +     N +++ Y KC + +D E  F  +  
Sbjct: 416 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 475

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R +V+W+ +I G+     G      F RM+ + +  +HIT  S+L AC  A  ++  +R 
Sbjct: 476 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 535

Query: 185 HSFILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
            +  +K  FG++      S ++DL G+ G ++DA
Sbjct: 536 FN-SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDA 568


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 343/600 (57%), Gaps = 10/600 (1%)

Query: 15  FKRPLSYLTPALYQNQTTTITNAQKHDRS-VLSSQLRNSGTIHESTHSAHS-FYSQALKV 72
           FKR  S LTP    + T   +   +  +S  LS  L+   +I     SA    Y+  L+ 
Sbjct: 9   FKRYYSLLTPLNLSDNTNPFSKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQT 68

Query: 73  SAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA-FDDMEKLFDEMRVRNIVT 131
             K      G Q+H+H++K GL     + N +L +Y K    F +  K+FD + V+++++
Sbjct: 69  CTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVIS 128

Query: 132 WNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           W ++ISG +  G   N    F +ML   V  +  T +++++AC +  D+++GR  H  +L
Sbjct: 129 WTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVL 188

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             GF  N  ++SAL+D++G+   ++DAR++FDE+L  D + W  ++S    N   D A+ 
Sbjct: 189 GRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALR 248

Query: 250 VF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            F ++ R  GM  D FTF +++ +CG LG  K G+++H  VI   F  +V+V +SLVDMY
Sbjct: 249 FFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMY 308

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K G++ ++ R+FD M  KN VSW+ ++ G+ QNGD +  +++ R M +     D     
Sbjct: 309 GKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFG 364

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           +IL +C  L+   + ++VH   I+ G    + +E+AL++ Y+KCG I  A   F  +   
Sbjct: 365 TILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVR 424

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           +L+TW S+IG +A +G  +E++ +F +M+   ++PD I+F+ +L ACSH GLV EG  YF
Sbjct: 425 NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYF 484

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
             M  DY I    EHY+C+ DLLGR GLL EA  L+ +      S    A +GAC    +
Sbjct: 485 ISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTN 544

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
             +A+  A++++ELEP   ++Y L++NVY +   W D  R+R++M+D   +K+PG SWIE
Sbjct: 545 YEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 604


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 326/597 (54%), Gaps = 33/597 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   +K   L +G Q+H  ++K+GL   + + N ++H Y +C   D   KLFD M  RN+
Sbjct: 137 LSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNV 196

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W +LI+G    +        F +M    V  + +T   ++ AC +  D+E+G+++ S+
Sbjct: 197 VSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSY 256

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I ++G  L+  + +ALVD+Y KCG +  AR++FDE   ++LV++N ++S Y  +      
Sbjct: 257 ISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDV 316

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + + + M  +G + D  T  S + +C  LG   +G+  H  V++   +    ++ +++DM
Sbjct: 317 LVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDM 376

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR--------------------- 346
           Y K G  + AC+VF+ M  K VV+WN+++ G  ++GD                       
Sbjct: 377 YMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMI 436

Query: 347 ----------EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
                     EA++L R+M       D VT+  I S+CG L      + V  Y  KN + 
Sbjct: 437 GALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIH 496

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             L +  AL++ +S+CG  + A+  F  +++ D+  WT+ IG  A  G ++ +IE+F +M
Sbjct: 497 VDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEM 556

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
           L   V+PD + F+ +L+ACSHGG V +G + F  M   + I P   HY C+ DLLGR GL
Sbjct: 557 LEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGL 616

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           L EA DL+ SMPIEP     G+ + AC+ H ++ LA +AAEKL +L P +   + L+SN+
Sbjct: 617 LEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNI 676

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           YAS   W DVAR+R  M++    KVPG S IE+ G IH F S D SH +  H+  ML
Sbjct: 677 YASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLML 733



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 267/539 (49%), Gaps = 46/539 (8%)

Query: 79  LQQGKQLHSHIMKLGL-CNK-LSLQNQVLHVYVKC---KAFDDMEKLF--DEMRVRNIVT 131
           L++ KQLH  +MK GL C+K  S  N+++   V+    ++ D     F  D+  + ++  
Sbjct: 38  LKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFM 97

Query: 132 WNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           +N LI G  + G        + +ML+  +  D  TF  LL AC +   +  G ++H  +L
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           K+G   + FVS++L+  Y +CG V+  R++FD +L R++V W  +++ Y+   L   A++
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +F  M   G++ +  T   ++++C  L   +LG+++   + +   +L  ++  +LVDMY 
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYM 277

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G+I  A ++FD    KN+V +NT++  +  +    + + +L +MLQ    PD+VT+ S
Sbjct: 278 KCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLS 337

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS--------------- 414
            +++C  L      +  HAY ++NG++ + +I NA+I+ Y KCG                
Sbjct: 338 TIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKT 397

Query: 415 -------IAG---------ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
                  IAG         A + F  + E DLV+W ++IGA     + +E+IE+F +M +
Sbjct: 398 VVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQN 457

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             +  D +  + + SAC + G +    ++    I    I  D +  T L D+  R G   
Sbjct: 458 QGIPGDRVTMVGIASACGYLGALDLA-KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPS 516

Query: 519 EAYDLLASMPIEPRS-DTLGAFIGACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVS 574
            A  +   M  E R      A IG   + G+   A     ++LE  ++P   V  AL++
Sbjct: 517 SAMHVFKRM--EKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLT 573


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 317/572 (55%), Gaps = 7/572 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  +  +A  G    G+ +H+ + K G  + + + N  + +Y+K ++ ++  + F  M 
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLL----DNVRLDHITFNSLLRACVQADDIEVG 181
           + N+ + N L+SG   C         R+L+    +    +  TF S+L+ C    D+  G
Sbjct: 153 IENLASRNNLLSGF--CDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEG 210

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + +H  ++K G   +  + ++LV++Y KCG    A +VF E+  RD+V W  +++ +   
Sbjct: 211 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 270

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
             G G + +FN M  EG   + +TF S++ SC +L    LG+Q+H  ++K S D +  V 
Sbjct: 271 GYGSG-LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG 329

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T+LVDMYAKN  ++DA  +F+ +  +++ +W  +V G+ Q+G G +AVK    M +    
Sbjct: 330 TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVK 389

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+E TLAS LS C  ++     RQ+H+ AIK G    + + +AL++ Y+KCG +  A   
Sbjct: 390 PNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVV 449

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   D V+W +II  Y+ HG   ++++ FE ML     PD + F+ VLSACSH GL+
Sbjct: 450 FDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 509

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG ++FN +   Y I P  EHY C+ D+LGR G   E    +  M +          +G
Sbjct: 510 EEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLG 569

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           ACK+HG+I   + AA KL ELEP    NY L+SN++A++  W DV  +R +M      K 
Sbjct: 570 ACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKE 629

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           PGCSW+E+ G++H F+S D SHP+   ++  L
Sbjct: 630 PGCSWVEVNGQVHVFLSHDGSHPKIREIHLKL 661



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 233/487 (47%), Gaps = 17/487 (3%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K++   ++K G+C    L + +++VYVKC++     ++ +EM ++++  WN  +S     
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSA--- 65

Query: 143 GGNVTPY--------FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
               +PY        F  M    +RL+   F SL+ A     D   G  +H+ + K GF 
Sbjct: 66  ---NSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFE 122

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +  +S+A V +Y K   VE+  + F  ++  +L   N ++S +      D    +   +
Sbjct: 123 SDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL 182

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            +EG + + +TF S++ +C + G    G+ IHG VIK   + D  +  SLV++YAK G+ 
Sbjct: 183 LVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSA 242

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + AC+VF  +  ++VVSW  ++ GF   G G   +++   ML   F P+  T  SIL SC
Sbjct: 243 NYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSC 301

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            SLS     +QVHA  +KN +     +  AL++ Y+K   +  A   F  + + DL  WT
Sbjct: 302 SSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 361

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            I+  YA  G  +++++ F +M    V+P+       LS CS    +  G +  ++ I  
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 421

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
                D    + L D+  + G  VE  +++    +   + +    I     HG  G A  
Sbjct: 422 GQS-GDMFVASALVDMYAKCG-CVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALK 479

Query: 555 AAEKLLE 561
           A E +L+
Sbjct: 480 AFEAMLD 486


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 343/580 (59%), Gaps = 5/580 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S ALK  +    L+ GK +H   +K  + + + + + ++ +Y KC   +D  K+F E   
Sbjct: 109 SIALKSCSGLQKLELGKMIHG-FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPK 167

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++V W ++I+G    G       +F RM+ L+ V  D +T  S   AC Q  D  +GR 
Sbjct: 168 PDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRS 227

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H F+ + GF     +++++++LYGK G +  A  +F E+  +D++ W+ MV+CYA N  
Sbjct: 228 VHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGA 287

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +FN M  + ++ +  T  S + +C +  + + G+QIH L +   F+LD+ V+T+
Sbjct: 288 ETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTA 347

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY K  + ++A  +F+ M  K+VVSW  +  G+ + G   +++ +  +ML     PD
Sbjct: 348 LMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPD 407

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + L  IL++   L I  +   +HA+  K+G      I  +LI  Y+KC SI  A + F 
Sbjct: 408 AIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFK 467

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVS 482
            ++  D+VTW+SII AY FHG  +E++++  +M +H+ V+P+ + F+ +LSACSH GL+ 
Sbjct: 468 GLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIE 527

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG++ F++M+++Y ++P+ EHY  + DLLGR+G L +A D++ +MP++      GA +GA
Sbjct: 528 EGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGA 587

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H +I + + AA  L  L+P+    Y L+SN+Y  ++ W D A+LR ++++N   K+ 
Sbjct: 588 CRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIV 647

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           G S +EI  E+H+F++SDR H ++  +Y ML  +   M E
Sbjct: 648 GQSMVEIKNEVHSFIASDRFHGESDQIYEMLRKLDARMRE 687



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 221/408 (54%), Gaps = 7/408 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           QLHS  +K+GL     +  ++  +Y +  +     KLF+E   + +  WN L+      G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 144 GNVT--PYFRRMLLDNV---RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             V     F +M  D V   R D+ T +  L++C     +E+G+ +H F LK     + F
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMF 140

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLE 257
           V SAL++LY KCG + DA +VF E    D+VLW  +++ Y  N   + A+A F+ M  LE
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  D  T  S  ++C  L    LGR +HG V ++ FD  + +A S++++Y K G+I  A
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIA 260

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +F  M  K+++SW++MV  +  NG    A+ L  +M+      + VT+ S L +C S 
Sbjct: 261 ANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASS 320

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S   E +Q+H  A+  G +  +++  AL++ Y KC S   A++ F  + + D+V+W  + 
Sbjct: 321 SNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLF 380

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
             YA  G++ +S+ VF  MLS+  RPD+IA +++L+A S  G+V + L
Sbjct: 381 SGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQAL 428



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 188/376 (50%), Gaps = 9/376 (2%)

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LHS  LKVG  L+ FV + L  LY +   +  A ++F+E  C+ + LWN ++  Y L  
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 243 LGDGAIAVFNLMRLEGM---KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                +++F+ M  + +   + D +T S  + SC  L   +LG+ IHG  +K+  D D+ 
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMF 140

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL-RDMLQG 358
           V ++L+++Y+K G ++DA +VF      +VV W +++ G+ QNG    A+    R ++  
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD VTL S  S+C  LS     R VH +  + G    L + N+++N Y K GSI  A
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIA 260

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  +   D+++W+S++  YA +G    ++ +F +M+   +  + +  +  L AC+  
Sbjct: 261 ANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASS 320

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
             + EG +   L + +Y    D    T L D+  +      A +L   MP +        
Sbjct: 321 SNLEEGKQIHKLAV-NYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVL 379

Query: 539 FIGACKV---HGSIGL 551
           F G  ++   H S+G+
Sbjct: 380 FSGYAEIGMAHKSLGV 395


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 325/592 (54%), Gaps = 18/592 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK+ A  G L  G+ +H+ +   G+ ++      + ++Y KC+   D  ++FD M 
Sbjct: 62  FTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMP 121

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV---------RLDHITFNSLLRACVQAD 176
           VR+ V WN L++G    G        RM ++ V         R D IT  S+L AC  A 
Sbjct: 122 VRDRVAWNALVAGYARNG------LARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +   R  H+F ++ G      V++A++D Y KCG +  AR VFD +  ++ V WN M+ 
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA N     A+A+FN M  EG+     +  + + +CG LG    G ++H L+++   D 
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +V V  +L+ MY+K   +D A  VFD +  +  VSWN M++G  QNG   +AV+L   M 
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
             +  PD  TL S++ +   +S   + R +H Y+I+  +   + +  ALI+ Y+KCG + 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F S +E  ++TW ++I  Y  HG  K ++E+FE+M S  + P+   FL VLSACS
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV EG  YF  M  DY + P  EHY  + DLLGR G L EA+  +  MP++P     
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GACK+H ++ LA+ +A+K+ EL P + V + L++N+YA+   W DVAR+R  M  N
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
              K PG S I++  EIHTF S   +H QA  +Y+ L     L+EE    G+
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAK---LIEEIKAVGY 644



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 202/403 (50%), Gaps = 10/403 (2%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF SLL+ C    D+  GR +H+ +   G       ++AL ++Y KC    DARRVFD +
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIA-VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
             RD V WN +V+ YA N L   A+  V  +   EG + D  T  S++ +C    +    
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           R+ H   I+   +  V VAT+++D Y K G+I  A  VFD M  KN VSWN M+ G+ QN
Sbjct: 181 REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           GD REA+ L   M++      +V++ + L +CG L    E  +VH   ++ G+ + +S+ 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NALI  YSKC  +  A   F  +     V+W ++I   A +G S++++ +F +M    V+
Sbjct: 301 NALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 463 PDSIAFLEVLSACSHGGLVSEGL--RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           PDS   + V+ A +    +S+ L  R+ +      H+  D    T L D+  + G +  A
Sbjct: 361 PDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA 417

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
             L  S   E    T  A I     +GS G  K A E   E++
Sbjct: 418 RILFNSAR-ERHVITWNAMIHG---YGSHGFGKAAVELFEEMK 456



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 136/248 (54%), Gaps = 1/248 (0%)

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+A F  M   G      TF+SL+  C   G    GR +H  +  +  D + L AT+L 
Sbjct: 42  AALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDE 364
           +MYAK     DA RVFD M  ++ V+WN +V G+ +NG  R A++++  M +     PD 
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +TL S+L +C +       R+ HA+AI++G++  +++  A+++AY KCG I  A   F  
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   + V+W ++I  YA +G S+E++ +F +M+   V    ++ L  L AC   G + EG
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 485 LRYFNLMI 492
           +R   L++
Sbjct: 282 MRVHELLV 289


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/611 (32%), Positives = 326/611 (53%), Gaps = 38/611 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QGKQLH+ I+ LG      +  +++  Y       D   + +   + + + WN LIS 
Sbjct: 109 LSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISS 168

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G  G     +++M    +R D  T+ S+L+AC +  DI  G++LH+ I     G N
Sbjct: 169 YVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWN 228

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV ++LV +Y K G +  AR +F+ +L RD V WN M+S YA   +   A  +F  MR+
Sbjct: 229 LFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRV 288

Query: 257 EGMKGDYFTFSSL-----------------------------------VNSCGTLGSSKL 281
           EG++ +  T++++                                   + +C  +G+ KL
Sbjct: 289 EGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKL 348

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           GR+IHG  I+  +D    V  +L+ MY++   +  A  +F     KN+++WN+M+ G+  
Sbjct: 349 GREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTH 408

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLS 400
                EA  L R+ML     P+ VT+ASIL  C  ++     ++ H Y ++  G + +L 
Sbjct: 409 MDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLL 468

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N+L++ Y++ G +  A + F S+   D VT+TS+I  Y   G  +E++++F++M    
Sbjct: 469 LWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRH 528

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD +  + VLSACSH GLV+EG++ F LM S Y I+P  EH+ C+ DL GR GLL +A
Sbjct: 529 IKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKA 588

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++  MP  P S      +GAC++HG+  + +WAAEKLLE+ P     Y L++N+YA+ 
Sbjct: 589 KEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAA 648

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
            CW  +A++R  MRD    K PGC+W+++      F+  D S P    +Y +L  +  LM
Sbjct: 649 GCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELM 708

Query: 641 EENNVSGHCNV 651
           ++    G  NV
Sbjct: 709 KDAEYVGKENV 719



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 218/447 (48%), Gaps = 50/447 (11%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK   +   +  GK+LH+ I    L   L + N ++ +Y K         LF+ M 
Sbjct: 197 YPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENML 256

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD------ 177
            R+ V+WNT+ISG  + G        F +M ++ + L+ IT+N++   CVQ+ +      
Sbjct: 257 ERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALE 316

Query: 178 -----------------------------IEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
                                        I++GR +H   ++  +     V +AL+ +Y 
Sbjct: 317 LLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYS 376

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           +C ++  A  +F     ++++ WN M+S Y      + A  +F  M L G++ +Y T +S
Sbjct: 377 RCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIAS 436

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           ++  C  + + + G++ H  +++++ F   +L+  SLVDMYA++G + +A R+FD ++ +
Sbjct: 437 ILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRR 496

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV- 386
           + V++ +++ G+G  G+GREA+KL  +M +    PD VT+ ++LS+C    +  E  ++ 
Sbjct: 497 DEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLF 556

Query: 387 ----HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYA 441
                AY I   ++ F      +++ + + G +  A +    +   P    W +++GA  
Sbjct: 557 ELMPSAYGIIPRLEHFA----CMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACR 612

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAF 468
            HG ++      EK+L   +RP++  +
Sbjct: 613 IHGNAEIGEWAAEKLLE--MRPENSGY 637



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 1/226 (0%)

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L S   G+Q+H L+I   F+   ++   LV  Y     + DA  + +     + + WN +
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLL 165

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +  + +NG   EA+   + M      PD+ T  S+L +CG        +++HA    + +
Sbjct: 166 ISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCL 225

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              L + N+L++ Y+K G ++ A   F ++ E D V+W ++I  YA  G+ KE+ E+F K
Sbjct: 226 GWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGK 285

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
           M    +  + I +  +   C   G   E L   + M S Y I  DS
Sbjct: 286 MRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRS-YGIDMDS 330



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +T  +D+  KN  I   C+  +    +N+V+    + GF   G+  +A K    + + + 
Sbjct: 29  STKEIDL-QKNYPILGECKSGNESMIENLVN---SLKGFASQGNLLKAFKTFSLIQRHAS 84

Query: 361 CPDE-----VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           C         +++S+L SC +L    + +Q+H   I  G +    I   L+  Y+    +
Sbjct: 85  CSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLL 144

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A A     +      + W  +I +Y  +GL  E++  +++M    +RPD   +  VL AC
Sbjct: 145 ADAHTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKAC 204


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 325/592 (54%), Gaps = 18/592 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK+ A  G L  G+ +H+ +   G+ ++      + ++Y KC+   D  ++FD M 
Sbjct: 62  FTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMP 121

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV---------RLDHITFNSLLRACVQAD 176
           VR+ V WN L++G    G        RM ++ V         R D IT  S+L AC  A 
Sbjct: 122 VRDRVAWNALVAGYARNG------LARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +   R  H+F ++ G      V++A++D Y KCG +  AR VFD +  ++ V WN M+ 
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA N     A+A+FN M  EG+     +  + + +CG LG    G ++H L+++   D 
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +V V  +L+ MY+K   +D A  VFD +  +  VSWN M++G  QNG   +AV+L   M 
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
             +  PD  TL S++ +   +S   + R +H Y+I+  +   + +  ALI+ Y+KCG + 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F S +E  ++TW ++I  Y  HG  K ++E+FE+M S  + P+   FL VLSACS
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV EG  YF  M  DY + P  EHY  + DLLGR G L EA+  +  MP++P     
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GACK+H ++ LA+ +A+K+ EL P + V + L++N+YA+   W DVAR+R  M  N
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
              K PG S I++  EIHTF S   +H QA  +Y+ L     L+EE    G+
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAK---LIEEIKAVGY 644



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 202/403 (50%), Gaps = 10/403 (2%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF SLL+ C    D+  GR +H+ +   G       ++AL ++Y KC    DARRVFD +
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIA-VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
             RD V WN +V+ YA N L   A+  V  +   EG + D  T  S++ +C    +    
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           R+ H   I+   +  V VAT+++D Y K G+I  A  VFD M  KN VSWN M+ G+ QN
Sbjct: 181 REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           GD REA+ L   M++      +V++ + L +CG L    E  +VH   ++ G+ + +S+ 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NALI  YSKC  +  A   F  +     V+W ++I   A +G S++++ +F +M    V+
Sbjct: 301 NALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 463 PDSIAFLEVLSACSHGGLVSEGL--RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           PDS   + V+ A +    +S+ L  R+ +      H+  D    T L D+  + G +  A
Sbjct: 361 PDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA 417

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
             L  S   E    T  A I     +GS G  K A E   E++
Sbjct: 418 RILFNSAR-ERHVITWNAMIHG---YGSHGFGKAAVELFEEMK 456



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 136/248 (54%), Gaps = 1/248 (0%)

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+A F  M   G      TF+SL+  C   G    GR +H  +  +  D + L AT+L 
Sbjct: 42  AALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDE 364
           +MYAK     DA RVFD M  ++ V+WN +V G+ +NG  R A++++  M +     PD 
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +TL S+L +C +       R+ HA+AI++G++  +++  A+++AY KCG I  A   F  
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   + V+W ++I  YA +G S+E++ +F +M+   V    ++ L  L AC   G + EG
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 485 LRYFNLMI 492
           +R   L++
Sbjct: 282 MRVHELLV 289


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 328/589 (55%), Gaps = 18/589 (3%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFL-------QQGKQLHSHIMKLGLCNKLSLQNQVLHVYV 109
           +  HS  +   QAL  S KF  L       +Q KQ+H+ +    L N +   N  L+   
Sbjct: 18  QKPHSKPNPNRQAL--SDKFNSLLQQCLSIKQLKQIHAQL----LTNSIHKPNSFLYKIA 71

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGI---INCGGNVTPYFRRMLLDNVRLDHITFN 166
             K F      F  +      ++N +I G+    N       ++ RM    ++ +++T+ 
Sbjct: 72  DLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYP 131

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
            L  AC     +E GR  H  +++ G   +  VS +L+ +Y +CG + DAR+VFDE+  +
Sbjct: 132 FLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQK 191

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           DLV WN M+S Y+       A+ +F  M   G + +  +  S++ +CG LG  KLG  + 
Sbjct: 192 DLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVE 251

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             V++    L+  + ++L+ MY K G++  A R+FD M  K+ V+WN M+ G+ QNG   
Sbjct: 252 EFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSE 311

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA+KL +DM   S  PD++TL  ILS+C S+      +QV  YA + G Q  + +  AL+
Sbjct: 312 EAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALV 371

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA--VRPD 464
           + Y+KCGS+  A + F  + + + V+W ++I A AFHG ++E++ +F+ M++    V P+
Sbjct: 372 DMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPN 431

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I F+ VLSAC H GLV EG R F++M S + ++P  EHY+C+ DL  R G L EA+D +
Sbjct: 432 DITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFV 491

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +MP +P    LGA +GAC+   +I +++   + LLELEPS   NY + S +YA+ R W 
Sbjct: 492 MTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWD 551

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           D AR+R +M+     K PGCSWI+I  ++H F + D  H + + ++ +L
Sbjct: 552 DSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQIL 600


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 332/587 (56%), Gaps = 9/587 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK     G +  G+++H+H++K GL   + + + ++++Y KC  F D  KLFDE  
Sbjct: 109 YPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFP 168

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++  WN +IS     G        F +M       + +TF  ++ +C +  ++E G+ 
Sbjct: 169 QRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKE 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  +++    L+ FV SALVD+YGKCG +E A+ VF+++  ++ + WN M++ Y+L   
Sbjct: 229 VHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLK-- 286

Query: 244 GDGAIAVFNLMRL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
           GD    +  LMR+  EG K    T +S++ +       + G+ IHG +++   D+D+ + 
Sbjct: 287 GDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFID 346

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            SL+D Y K G +  A  +F  ++   VVSWN M+ G    G+  +A+ +  +M +    
Sbjct: 347 VSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVK 406

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD +T +S LS+C  L+   + R++H   I + ++A   +  AL++ Y+KCG +  A + 
Sbjct: 407 PDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKL 466

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  + + DLV+WTS+I AY  HG + E++ +F++M    VR DS+ FL VLSACSH GLV
Sbjct: 467 FHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLV 526

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT--LGAF 539
            EG  YFN M+  Y I P  EHY+CL DLLGR G L EAY++L     E RSD   L   
Sbjct: 527 DEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSK-ETRSDIGLLSTL 585

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
             AC +H +  L     + L+E++P  P  Y L+SN+YAS   W +V ++R+ M++    
Sbjct: 586 FSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLK 645

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           K PGCSWIEI   IH F + D+S+P A  +Y  L  +   ME+N + 
Sbjct: 646 KSPGCSWIEINQRIHPFFAEDKSNPLADGVYECLNILGCHMEKNELE 692



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 239/470 (50%), Gaps = 17/470 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR- 127
           AL+       L+QGK +H  I   G  + + L   ++  Y  C  +   E +F       
Sbjct: 9   ALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPL 68

Query: 128 NIVTWNTLISGIINCGGNVTPYFRRMLLDN------VRLDHITFNSLLRACVQADDIEVG 181
           ++  WN L+S   N   N        L D       VR D  T+  +L+AC     +  G
Sbjct: 69  DVSLWNALLSAYTN---NFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYG 125

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           RR+H+ +LK G   + FV S+L+++Y KC    DA ++FDE   RD+  WN ++SCY  +
Sbjct: 126 RRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKD 185

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A+  F+ M+  G + +  TF+ +V+SC  L + + G+++H  +I++   LD  V 
Sbjct: 186 GKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVL 245

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           ++LVDMY K G ++ A  VF+ +  KN ++WN M+ G+   GD R  ++LL  M      
Sbjct: 246 SALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTK 305

Query: 362 PDEVTLASILSSCGSLSISCETRQ---VHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           P  +TL SI+ +    S S + R    +H Y ++N +   + I+ +LI+ Y KCG ++ A
Sbjct: 306 PTLMTLTSIIYAS---SRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSA 362

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F ++ + ++V+W  +I  +   G   +++ +++ M  H V+PD++ F   LSACS  
Sbjct: 363 ETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQL 422

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             + +G R  +  I ++ +  +      L D+  + G + EA  L   +P
Sbjct: 423 AALDKG-RELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLP 471



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 2/327 (0%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D++T  S LR C  +  ++ G+ +H  I   GF  N  +S +L+  Y  C     A  V
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 220 FDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLG 277
           F    C  D+ LWN ++S Y  N     A+ +F+ +     ++ D++T+  ++ +CG LG
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
               GR+IH  ++K     DV V +SL++MYAK     DA ++FD    ++V  WN ++ 
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            + ++G    A+K    M +  F P+ VT   ++SSC  L      ++VH   I+  +  
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
              + +AL++ Y KCG +  A + F  +   + +TW ++I  Y+  G S+  IE+  +M 
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN 300

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEG 484
               +P  +    ++ A S    +  G
Sbjct: 301 DEGTKPTLMTLTSIIYASSRSVQLRHG 327


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 324/591 (54%), Gaps = 10/591 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    +   K   L  G+  H  + +        L+N VL +Y KC +  D  K+FDEMR
Sbjct: 13  YKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMR 72

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+WNT+IS     G     +  F  ML    + +  T+   LR+ +    +E+G++
Sbjct: 73  ERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQ 132

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS  ++ G G N  V++A+ ++Y KCG++E A  VF+++  ++ V W  ++  Y     
Sbjct: 133 IHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAER 192

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+A+F  M  EG++ D + FS ++ +C  L     GRQIHG ++K   + +V V T 
Sbjct: 193 QMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTP 252

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVD Y K  N++ A + F+ ++  N VSW+ ++ G+ Q G+  EA+K    +   S   +
Sbjct: 253 LVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDIN 312

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  SI  +C +L+      Q HA AIK+ + A+   E+A+I  YS+CG +  A + F 
Sbjct: 313 SFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFE 372

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S+ +PD V WT+II  YA+ G + E++++F +M    VRP+++ F+ VL+ACSH GLV E
Sbjct: 373 SIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIE 432

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +Y   M S+Y +    +HY C+ D+  R G L EA +L+ SMP  P + +    +G C
Sbjct: 433 GRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGC 492

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
             + ++ + + AAE L +L+P     Y L+ N+YAS   W + A +RKMM +    K   
Sbjct: 493 WTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELS 552

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV--------FGLMEENNVS 646
           CSWI + G++H F+  D+ HPQ   +Y+ L  +         GL+ E +VS
Sbjct: 553 CSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIKEETGLLTEEDVS 603



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 14/293 (4%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++E        +S  LK  A    L  G+Q+H HI+KLGL +++S+   ++  YVKC   
Sbjct: 204 VNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNL 263

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +   K F+ +   N V+W+ LI+G    G        F  +   +V ++  T+ S+ +AC
Sbjct: 264 ESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQAC 323

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
               D   G + H+  +K          SA++ +Y +CG ++ A RVF+ +   D V W 
Sbjct: 324 SALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWT 383

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++ YA       A+ +F  M+  G++ +  TF +++ +C   G    GRQ       +
Sbjct: 384 AIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQ-----YLE 438

Query: 293 SFDLDVLVATS------LVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
           S   +  VAT+      +VD+Y++ G + +A  +   M  + + +SW  ++ G
Sbjct: 439 SMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/521 (37%), Positives = 309/521 (59%), Gaps = 6/521 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           K+FD+M  RN+VTW  +I+    + C  +    F  M L     D  T++S+L AC +  
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNV 233
            + +G++LHS ++++G  L+  V  +LVD+Y KC   G V+D+R+VF+++   +++ W  
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 234 MVSCYALNCLGDG-AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++ YA +   D  AI +F  M    ++ ++F+FSS++ +CG L     G Q++   +K 
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 185

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                  V  SL+ MYA++G ++DA + FD +  KN+VS+N +V G+ +N    EA  L 
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 245

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++          T AS+LS   S+    +  Q+H   +K G ++   I NALI+ YS+C
Sbjct: 246 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 305

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+I  A Q F  +++ ++++WTS+I  +A HG +  ++E+F KML    +P+ I ++ VL
Sbjct: 306 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 365

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH G++SEG ++FN M  ++ I+P  EHY C+ DLLGR GLLVEA + + SMP+   
Sbjct: 366 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 425

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +      +GAC+VHG+  L + AAE +LE EP  P  Y L+SN++AS   W DV ++RK 
Sbjct: 426 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 485

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K  GCSWIE+   +H F   + SHPQA  +Y  L
Sbjct: 486 MKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQEL 526



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 228/417 (54%), Gaps = 12/417 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA---FDDMEKLFD 122
           YS  L    + G L  GKQLHS +++LGL   + +   ++ +Y KC A    DD  K+F+
Sbjct: 54  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 113

Query: 123 EMRVRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           +M   N+++W  +I+       C       F +M+  ++R +H +F+S+L+AC    D  
Sbjct: 114 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 173

Query: 180 VGRRLHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            G +++S+ +K+G   +NC V ++L+ +Y + G +EDAR+ FD +  ++LV +N +V  Y
Sbjct: 174 TGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 232

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N   + A  +FN +   G+    FTF+SL++   ++G+   G QIHG ++K  +  + 
Sbjct: 233 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 292

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            +  +L+ MY++ GNI+ A +VF+ M  +NV+SW +M+ GF ++G    A+++   ML+ 
Sbjct: 293 CICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET 352

Query: 359 SFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P+E+T  ++LS+C  + +  E  +  ++   ++G+   +     +++   + G +  
Sbjct: 353 GTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVE 412

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           A++   S+    D + W +++GA   HG ++      E +L     PD  A   +LS
Sbjct: 413 AMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAYILLS 467



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 165/274 (60%), Gaps = 6/274 (2%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYA-LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           A +VFD++  R+LV W +M++ +A L C  D AI +F  M L G   D FT+SS++++C 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARD-AIDLFLDMELSGYVPDRFTYSSVLSACT 62

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---NGNIDDACRVFDGMTAKNVVS 331
            LG   LG+Q+H  VI+    LDV V  SLVDMYAK   +G++DD+ +VF+ M   NV+S
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 332 WNTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           W  ++  + Q+G+  +EA++L   M+ G   P+  + +S+L +CG+LS      QV++YA
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +K G+ +   + N+LI+ Y++ G +  A + F  + E +LV++ +I+  YA +  S+E+ 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +F ++    +   +  F  +LS  +  G + +G
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 276



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 147/303 (48%), Gaps = 19/303 (6%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK          G+Q++S+ +KLG+ +   + N ++ +Y +    +D  K FD
Sbjct: 156 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 215

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N+V++N ++ G      +   +  F  +    + +   TF SLL        +  
Sbjct: 216 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 275

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H  +LK G+  N  + +AL+ +Y +CG +E A +VF+E+  R+++ W  M++ +A 
Sbjct: 276 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 335

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR-------QIHGLVIKQS 293
           +     A+ +F+ M   G K +  T+ +++++C  +G    G+       + HG+V +  
Sbjct: 336 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 395

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD---GREAV 349
                     +VD+  ++G + +A    + M    + + W T++     +G+   GR A 
Sbjct: 396 H------YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 449

Query: 350 KLL 352
           +++
Sbjct: 450 EMI 452



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A A + F  + E +LVTWT +I  +A  G ++++I++F  M      PD   +  VLSAC
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 476 SHGGLVSEG 484
           +  GL++ G
Sbjct: 62  TELGLLALG 70


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/521 (37%), Positives = 309/521 (59%), Gaps = 6/521 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           K+FD+M  RN+VTW  +I+    + C  +    F  M L     D  T++S+L AC +  
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNV 233
            + +G++LHS ++++G  L+  V  +LVD+Y KC   G V+D+R+VF+++   +++ W  
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 234 MVSCYALNCLGDG-AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++ YA +   D  AI +F  M    ++ ++F+FSS++ +CG L     G Q++   +K 
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 190

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                  V  SL+ MYA++G ++DA + FD +  KN+VS+N +V G+ +N    EA  L 
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 250

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++          T AS+LS   S+    +  Q+H   +K G ++   I NALI+ YS+C
Sbjct: 251 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 310

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+I  A Q F  +++ ++++WTS+I  +A HG +  ++E+F KML    +P+ I ++ VL
Sbjct: 311 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 370

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH G++SEG ++FN M  ++ I+P  EHY C+ DLLGR GLLVEA + + SMP+   
Sbjct: 371 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 430

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +      +GAC+VHG+  L + AAE +LE EP  P  Y L+SN++AS   W DV ++RK 
Sbjct: 431 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 490

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K  GCSWIE+   +H F   + SHPQA  +Y  L
Sbjct: 491 MKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQEL 531



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 228/417 (54%), Gaps = 12/417 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA---FDDMEKLFD 122
           YS  L    + G L  GKQLHS +++LGL   + +   ++ +Y KC A    DD  K+F+
Sbjct: 59  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 118

Query: 123 EMRVRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           +M   N+++W  +I+       C       F +M+  ++R +H +F+S+L+AC    D  
Sbjct: 119 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 178

Query: 180 VGRRLHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            G +++S+ +K+G   +NC V ++L+ +Y + G +EDAR+ FD +  ++LV +N +V  Y
Sbjct: 179 TGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 237

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N   + A  +FN +   G+    FTF+SL++   ++G+   G QIHG ++K  +  + 
Sbjct: 238 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 297

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            +  +L+ MY++ GNI+ A +VF+ M  +NV+SW +M+ GF ++G    A+++   ML+ 
Sbjct: 298 CICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET 357

Query: 359 SFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P+E+T  ++LS+C  + +  E  +  ++   ++G+   +     +++   + G +  
Sbjct: 358 GTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVE 417

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           A++   S+    D + W +++GA   HG ++      E +L     PD  A   +LS
Sbjct: 418 AMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAYILLS 472



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 165/274 (60%), Gaps = 6/274 (2%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYA-LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           A +VFD++  R+LV W +M++ +A L C  D AI +F  M L G   D FT+SS++++C 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARD-AIDLFLDMELSGYVPDRFTYSSVLSACT 67

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---NGNIDDACRVFDGMTAKNVVS 331
            LG   LG+Q+H  VI+    LDV V  SLVDMYAK   +G++DD+ +VF+ M   NV+S
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 332 WNTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           W  ++  + Q+G+  +EA++L   M+ G   P+  + +S+L +CG+LS      QV++YA
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +K G+ +   + N+LI+ Y++ G +  A + F  + E +LV++ +I+  YA +  S+E+ 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +F ++    +   +  F  +LS  +  G + +G
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 281



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 147/303 (48%), Gaps = 19/303 (6%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK          G+Q++S+ +KLG+ +   + N ++ +Y +    +D  K FD
Sbjct: 161 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 220

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N+V++N ++ G      +   +  F  +    + +   TF SLL        +  
Sbjct: 221 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 280

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H  +LK G+  N  + +AL+ +Y +CG +E A +VF+E+  R+++ W  M++ +A 
Sbjct: 281 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 340

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR-------QIHGLVIKQS 293
           +     A+ +F+ M   G K +  T+ +++++C  +G    G+       + HG+V +  
Sbjct: 341 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 400

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD---GREAV 349
                     +VD+  ++G + +A    + M    + + W T++     +G+   GR A 
Sbjct: 401 H------YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 454

Query: 350 KLL 352
           +++
Sbjct: 455 EMI 457



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A A + F  + E +LVTWT +I  +A  G ++++I++F  M      PD   +  VLSAC
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 476 SHGGLVSEG 484
           +  GL++ G
Sbjct: 67  TELGLLALG 75


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 327/589 (55%), Gaps = 18/589 (3%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFL-------QQGKQLHSHIMKLGLCNKLSLQNQVLHVYV 109
           +  HS  +   QAL  S KF  L       +Q KQ+H+ +    L N +   N  L+   
Sbjct: 18  QKPHSKPNPNRQAL--SDKFNSLLQQCLSIKQLKQIHAQL----LTNSIHKPNSFLYKIA 71

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGI---INCGGNVTPYFRRMLLDNVRLDHITFN 166
             K F      F  +      ++N +I G+    N       ++ RM    ++ +++T+ 
Sbjct: 72  DLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYP 131

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
            L  AC     +E GR  H  +++ G   +  VS +L+ +Y +CG + DAR+VFDE+  +
Sbjct: 132 FLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQK 191

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           DLV WN M+S Y+       A+ +F  M   G + +  +  S++ +CG LG  KLG  + 
Sbjct: 192 DLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVE 251

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             V++    L+  + ++L+ MY K G++  A R+FD M  K+ V+WN M+ G+ QNG   
Sbjct: 252 EFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSE 311

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA+KL +DM   S  PD++TL  ILS+C S+      +QV  YA + G Q  + +  AL+
Sbjct: 312 EAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALV 371

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA--VRPD 464
           + Y+KCGS+  A + F  +   + V+W ++I A AFHG ++E++ +F+ M++    V P+
Sbjct: 372 DMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPN 431

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I F+ VLSAC H GLV EG R F++M S + ++P  EHY+C+ DL  R G L EA+D +
Sbjct: 432 DITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFV 491

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +MP +P    LGA +GAC+   +I +++   + LLELEPS   NY + S +YA+ R W 
Sbjct: 492 MTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWD 551

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           D AR+R +M+     K PGCSWI+I  ++H F + D  H + + ++ +L
Sbjct: 552 DSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQIL 600


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 318/560 (56%), Gaps = 4/560 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    +++G  +H   +KLGL  +L + N ++ +Y KC+   + + LFD+   +NI
Sbjct: 211 LPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNI 270

Query: 130 VTWNTLISGIINCGGNVTPYF--RRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLH 185
           V+WN++I G          ++  ++M  ++ ++  D  T  ++L  C++  +++  + LH
Sbjct: 271 VSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELH 330

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            +  + G   N  V++A +  Y +CG +  + RVFD +  + +  WN ++  YA N    
Sbjct: 331 GYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPR 390

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ ++  M   G+  D+FT  SL+ +C  + S   G +IHG  ++    +D  +  SL+
Sbjct: 391 KALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL 450

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            +Y   G    A  +FDGM  +++VSWN M+ G+ QNG   EA+ L R ML     P E+
Sbjct: 451 SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 510

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            +  +  +C  LS     +++H +A+K  +   + + +++I+ Y+K G I  + + F  +
Sbjct: 511 AIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL 570

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +E D+ +W  II  Y  HG  KE++E+FEKML   ++PD   F  +L ACSH GLV +GL
Sbjct: 571 REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGL 630

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            YFN M++ ++I P  EHYTC+ D+LGR G + +A  L+  MP +P S    + + +C++
Sbjct: 631 EYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 690

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           HG++GL +  A KLLELEP KP NY L+SN++A    W DV R+R  M+D    K  GCS
Sbjct: 691 HGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCS 750

Query: 606 WIEIAGEIHTFVSSDRSHPQ 625
           WIE+ G++H F+  D   P+
Sbjct: 751 WIEVGGKVHNFLIGDEMLPE 770



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 247/518 (47%), Gaps = 15/518 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           +K  A    L  G+ +H    K+ L + + + N ++ +Y KC   ++  K+F+ M  RN+
Sbjct: 108 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNL 167

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLL--DNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           V+WN++I G    G     +  FR ML+  ++   D  T  ++L  C   +DIE G  +H
Sbjct: 168 VSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVH 227

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +K+G      V+++L+D+Y KC F+ +A+ +FD+   +++V WN M+  YA      
Sbjct: 228 GLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVC 287

Query: 246 GAIAVFNLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               +   M+ E   MK D FT  +++  C      +  +++HG   +     + LVA +
Sbjct: 288 RTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANA 347

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            +  Y + G +  + RVFD M  K V SWN ++ G+ QN D R+A+ L   M      PD
Sbjct: 348 FIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 407

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T+ S+L +C  +       ++H +A++NG+     I  +L++ Y  CG    A   F 
Sbjct: 408 WFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFD 467

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++   LV+W  +I  Y+ +GL  E+I +F +MLS  ++P  IA + V  ACS    +  
Sbjct: 468 GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRL 527

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGR---VGLLVEAYDLLASMPIEPRSDTLGAFI 540
           G +  +      H+  D    + + D+  +   +GL    +D L     E    +    I
Sbjct: 528 G-KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR----EKDVASWNVII 582

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
               +HG    A    EK+L L   KP ++     + A
Sbjct: 583 AGYGIHGRGKEALELFEKMLRL-GLKPDDFTFTGILMA 619



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 173/314 (55%), Gaps = 6/314 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFV-SSALVDLYGKCGFVEDARRVFDEVLCR 226
           LL+AC Q  DIEVGRRLH  +       N FV ++ ++ +Y  CG   D+R VFD++  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +L  WN +VS Y  N L + A+++F+ L+ +   K D FT   ++ +C  L    LG+ I
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           HG+  K     DV V  +L+ MY K G +++A +VF+ M  +N+VSWN+++ GF +NG  
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 346 REAVKLLRDMLQG--SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           +E+    R+ML G  SF PD  TL ++L  C       +   VH  A+K G+   L + N
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN 243

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH--AV 461
           +LI+ YSKC  ++ A   F    + ++V+W S+IG YA       +  + +KM +    +
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKM 303

Query: 462 RPDSIAFLEVLSAC 475
           + D    L VL  C
Sbjct: 304 KADEFTILNVLPVC 317



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 208/417 (49%), Gaps = 28/417 (6%)

Query: 79  LQQGKQLHSHI-MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           ++ G++LH  +      CN   L  +++ +Y  C +  D   +FD++R +N+  WN ++S
Sbjct: 14  IEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVS 73

Query: 138 GIINCGGNVTPYFRRMLLDNV-------------RLDHITFNSLLRACVQADDIEVGRRL 184
                      Y R  L ++              + D+ T   +++AC    D+ +G+ +
Sbjct: 74  A----------YTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H    K+    + FV +AL+ +YGKCG VE+A +VF+ +  R+LV WN ++  ++ N   
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 245 DGAIAVFNLMRL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             +   F  M +  E    D  T  +++  C      + G  +HGL +K   + +++V  
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN 243

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML--QGSF 360
           SL+DMY+K   + +A  +FD    KN+VSWN+M+ G+ +  D      LL+ M       
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKM 303

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             DE T+ ++L  C   S     +++H Y+ ++G+Q+   + NA I AY++CG++  + +
Sbjct: 304 KADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSER 363

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            F  +    + +W +++  YA +   +++++++ +M    + PD      +L ACS 
Sbjct: 364 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 308/543 (56%), Gaps = 2/543 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH+ +++ G  + ++L N +L+VY KC   +D + LF+ M  R++++WN+L+SG    G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 145 --NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
              V     RM  D +  D  TF SL+ A      + VG+ +H  IL+ G   +  + ++
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ +Y KCG V  A R+F+ ++ +D++ W  M+S    N   D A+ VF  M    +   
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPS 347

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T +S++ +C  LGS  LG  +HG +++Q   LD+    SLV MYAK G+++ +C VFD
Sbjct: 348 TATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFD 407

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M+ +++VSWN +V G  QNG   +A+ L  +M +    PD +T+ S+L +C S+    +
Sbjct: 408 RMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQ 467

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + +H +  K+ +   + I+ AL++ YSKCG +  A +CF  + + DLV+W+SII  Y  
Sbjct: 468 GKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGS 527

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG  + ++ ++   L   ++P+ + +L +LSACSH GLV +GL +F+ M  D+ I P  E
Sbjct: 528 HGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLE 587

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           H  C+ DLL R G + EAY     M  +P  D LG  + AC+  G++ L    A +++ L
Sbjct: 588 HRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVIL 647

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           +P+   NY  +++ YAS + W  V  +   M+     K+PG S+IE+ G I TF +   S
Sbjct: 648 KPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSS 707

Query: 623 HPQ 625
           HPQ
Sbjct: 708 HPQ 710



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 242/476 (50%), Gaps = 11/476 (2%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           ++   AH+F S  +K          G   H  ++  G  +   +   +++ Y K      
Sbjct: 43  DTPPDAHTFPS-LVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQS 101

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQ 174
             K+FD M  RN+V W T+I      G +   +  +  M    ++   +T   LL   ++
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLE 161

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              ++    LH+ +++ GFG +  ++++++++Y KCG VEDA+ +F+ +  RD++ WN +
Sbjct: 162 LVHLQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSL 218

Query: 235 VSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           VS YA   LG+    + +   M+ +G++ D  TF SLV++        +G+ +HG +++ 
Sbjct: 219 VSGYAQ--LGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRA 276

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             + D  + TSL+ MY K GN++ A R+F+GM  K+V+SW  M+ G  QN     AV + 
Sbjct: 277 GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVF 336

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           R ML+    P   T+AS+L++C  L        VH Y ++  ++  +  +N+L+  Y+KC
Sbjct: 337 RRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKC 396

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G +  +   F  +   D+V+W +I+  +A +G   +++ +F +M     RPDSI  + +L
Sbjct: 397 GHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLL 456

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            AC+  G + +G ++ +  ++   + P     T L D+  + G L  A      MP
Sbjct: 457 QACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP 511



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 187/353 (52%), Gaps = 6/353 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A  + +K G    GK +H HI++ GL     ++  ++ +Y+KC   +   ++F+ M  ++
Sbjct: 256 AAAMQSKLGV---GKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKD 312

Query: 129 IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +++W  +ISG++  +C       FRRML   V     T  S+L AC +     +G  +H 
Sbjct: 313 VISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHG 372

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           +IL+    L+    ++LV +Y KCG +E +  VFD +  RD+V WN +VS +A N     
Sbjct: 373 YILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCK 432

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +FN MR    + D  T  SL+ +C ++G+   G+ IH  V K      +L+ T+LVD
Sbjct: 433 ALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVD 492

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K G++  A + FD M  +++VSW++++ G+G +G G  A+++  D L     P+ V 
Sbjct: 493 MYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVI 552

Query: 367 LASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
             SILS+C    +  +     H+     G++  L     +++  S+ G +  A
Sbjct: 553 YLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEA 605



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 191/351 (54%), Gaps = 5/351 (1%)

Query: 131 TWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           ++N +I+ +   G   +V   +  ML  +   D  TF SL++AC   D    G   H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +  G+  + +++++L++ Y K G  + AR+VFD +  R++V W  M+ CY      D A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           +++N+MR +G++    T   L++  G L    L + +H  VI+  F  DV +A S++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLS--GVLELVHL-QCLHACVIQYGFGSDVALANSMLNVY 191

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K G ++DA  +F+ M A++V+SWN++V G+ Q G+ RE ++LL  M      PD+ T  
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S++S+    S     + VH + ++ G++    IE +LI  Y KCG++  A + F  +   
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           D+++WT++I     +  +  ++ VF +ML   V P +     VL+AC+  G
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELG 362


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 325/564 (57%), Gaps = 2/564 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +GK +H +++KLG        N ++ +Y K     D   +F++++  +IV+WN +I+G +
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                        +M    +  +  T +S L+AC      E+GR+LHS ++K+    + F
Sbjct: 336 LHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLF 395

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           VS  LVD+Y KC  +EDAR  F+ +  +DL+ WN ++S Y+       A+++F  M  EG
Sbjct: 396 VSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEG 455

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  +  T S+++ S   L    + RQ+HGL +K  F  D+ V  SL+D Y K  +++DA 
Sbjct: 456 IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAE 515

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           R+F+  T  ++VS+ +M+  + Q G G EA+KL  +M      PD    +S+L++C +LS
Sbjct: 516 RIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLS 575

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + +Q+H + +K G    +   N+L+N Y+KCGSI  A + F  + E  +V+W+++IG
Sbjct: 576 AFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIG 635

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
             A HG  ++++++F +ML   V P+ I  + VL AC+H GLV+E   YF  M   +   
Sbjct: 636 GLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFK 695

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY C+ DLLGR G + EA +L+  MP E  +   GA +GA ++H  + L + AAE 
Sbjct: 696 PMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEM 755

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L  LEP K   + L++N+YAS   W +VA +R++MRD+   K PG SWIE+  +++TF+ 
Sbjct: 756 LFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLV 815

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEE 642
            DRSH ++  +YA L  +  LM++
Sbjct: 816 GDRSHYRSQEIYAKLDELSDLMDK 839



 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 237/433 (54%), Gaps = 13/433 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS+ L        L+ G Q+H+HI K GL +  S++N ++++Y KC+ F    KL DE  
Sbjct: 59  YSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESS 118

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W+ LISG      GG     F  M L  V+ +  TF+S+L+AC    D+ +G++
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  ++  GF  + FV++ LV +Y KC    D++R+FDE+  R++V WN + SCY     
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDF 238

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  M L G+K + F+ SS+VN+C  L  S  G+ IHG +IK  +D D   A +
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMYAK G++ DA  VF+ +   ++VSWN ++ G   +    +A++LL  M +   CP+
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPN 358

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL+S L +C  + +    RQ+H+  +K  +++ L +   L++ YSKC  +  A   F 
Sbjct: 359 IFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN 418

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD---------SIAFLEVLSA 474
            + E DL+ W +II  Y+ +    E++ +F +M    +  +         S A L+V+  
Sbjct: 419 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHV 478

Query: 475 CS--HGGLVSEGL 485
           C   HG  V  G 
Sbjct: 479 CRQVHGLSVKSGF 491



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 149/540 (27%), Positives = 277/540 (51%), Gaps = 37/540 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  +    L+ GKQ+H  ++  G    + + N ++ +Y KC  F D ++LFDE+ 
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP 219

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+WN L S  +     G     F  M+L  ++ +  + +S++ AC    D   G+ 
Sbjct: 220 ERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKI 279

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +++K+G+  + F ++ALVD+Y K G + DA  VF+++   D+V WN +++   L+  
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEH 339

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +   M+  G+  + FT SS + +C  +G  +LGRQ+H  ++K   + D+ V+  
Sbjct: 340 HEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG 399

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMY+K   ++DA   F+ +  K++++WN ++ G+ Q  +  EA+ L  +M +     +
Sbjct: 400 LVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFN 459

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           + TL++IL S   L +    RQVH  ++K+G  + + + N+LI++Y KC  +  A + F 
Sbjct: 460 QTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFE 519

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
                DLV++TS+I AYA +G  +E++++F +M    ++PD      +L+AC++     +
Sbjct: 520 ECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQ 579

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA----------------------- 520
           G +  ++ I  Y  + D      L ++  + G + +A                       
Sbjct: 580 G-KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLA 638

Query: 521 -----------YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569
                      ++ +    + P   TL + +GAC   G +  AK   E + EL   KP+ 
Sbjct: 639 QHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQ 698



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 180/322 (55%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           ++++ LL  C     +  G ++H+ I K G   +  + + L++LY KC     AR++ DE
Sbjct: 57  VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDE 116

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
               DLV W+ ++S YA N LG GA+  F+ M L G+K + FTFSS++ +C  +   ++G
Sbjct: 117 SSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIG 176

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           +Q+HG+V+   F+ DV VA +LV MYAK     D+ R+FD +  +NVVSWN +   + Q 
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQI 236

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
               EAV L  +M+     P+E +L+S++++C  L  S   + +H Y IK G        
Sbjct: 237 DFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSA 296

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NAL++ Y+K G +A A+  F  +K+PD+V+W ++I     H   ++++E+  +M    + 
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC 356

Query: 463 PDSIAFLEVLSACSHGGLVSEG 484
           P+       L AC+  GL   G
Sbjct: 357 PNIFTLSSALKACAGMGLKELG 378



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 142/310 (45%), Gaps = 26/310 (8%)

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           A+ NL+          ++S L++ C T  S + G QIH  + K     D  +   L+++Y
Sbjct: 42  AILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY 101

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTL 367
           +K  N   A ++ D  +  ++VSW+ ++ G+ QNG G  A+    +M L G  C +E T 
Sbjct: 102 SKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKC-NEFTF 160

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +S+L +C  +      +QVH   + +G +  + + N L+  Y+KC     + + F  + E
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS----------- 476
            ++V+W ++   Y       E++ +F +M+   ++P+  +   +++AC+           
Sbjct: 221 RNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           HG L+  G  +            D      L D+  +VG L +A  +   +  +P   + 
Sbjct: 281 HGYLIKLGYDW------------DPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSW 327

Query: 537 GAFIGACKVH 546
            A I  C +H
Sbjct: 328 NAVIAGCVLH 337


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 310/521 (59%), Gaps = 6/521 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           K+FD M  RN+VTW  +I+     G   +    F  M+L     D  T + ++ AC +  
Sbjct: 100 KVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMG 159

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNV 233
            + +GR+ H  ++K G  L+  V  +LVD+Y KC   G V+DAR+VFD +   +++ W  
Sbjct: 160 LLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTA 219

Query: 234 MVSCYALNCLGD-GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++ Y  +   D  AI +F  M    +K ++FTFSS++ +C  L    LG Q++ LV+K 
Sbjct: 220 IITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                  V  SL+ MY++ GN+++A + FD +  KN+VS+NT+V  + ++ +  EA +L 
Sbjct: 280 RLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELF 339

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++       +  T AS+LS   S+    +  Q+H+  +K+G ++ L I NALI+ YS+C
Sbjct: 340 NEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRC 399

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+I  A Q F  + + ++++WTS+I  +A HG +  ++E F KML   V P+ + ++ VL
Sbjct: 400 GNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVL 459

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH GL+SEGL++F  M  ++ I+P  EHY C+ DLLGR G L EA +L+ SMP +  
Sbjct: 460 SACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKAD 519

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +  L  F+GAC+VHG++ L K AAE +LE +P  P  Y L+SN++AS   W +VA +RK 
Sbjct: 520 ALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKK 579

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K  GCSWIE+  ++H F   D SHPQA  +Y  L
Sbjct: 580 MKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDEL 620



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 8/366 (2%)

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R++V+W+ LIS   N          F  ML      +   F  + RAC   ++I +G+ +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 185 HSFILKVG-FGLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
             F+LK G F  +  V  AL+D++ K  G +E A +VFD +  R++V W +M++ +    
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F  M L G   D FT S +V++C  +G   LGRQ H LV+K   DLDV V  
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 303 SLVDMYAK---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-GREAVKLLRDMLQG 358
           SLVDMYAK   +G++DDA +VFD M   NV+SW  ++ G+ Q+G   REA++L  +M+QG
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              P+  T +S+L +C +LS      QV+A  +K  + +   + N+LI+ YS+CG++  A
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA 304

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  + E +LV++ +I+ AYA    S+E+ E+F ++       ++  F  +LS  S  
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 479 GLVSEG 484
           G + +G
Sbjct: 365 GAIGKG 370



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 222/405 (54%), Gaps = 13/405 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA---FDDMEKLFDE 123
           S  +   A+ G L  G+Q H  +MK GL   + +   ++ +Y KC A    DD  K+FD 
Sbjct: 149 SGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDR 208

Query: 124 MRVRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           M V N+++W  +I+G +  GG        F  M+   V+ +H TF+S+L+AC    DI +
Sbjct: 209 MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL 268

Query: 181 GRRLHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           G ++++ ++K+    +NC V ++L+ +Y +CG +E+AR+ FD +  ++LV +N +V+ YA
Sbjct: 269 GEQVYALVVKMRLASINC-VGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            +   + A  +FN +   G   + FTF+SL++   ++G+   G QIH  ++K  F  ++ 
Sbjct: 328 KSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLH 387

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  +L+ MY++ GNI+ A +VF+ M   NV+SW +M+ GF ++G    A++    ML+  
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAG 447

Query: 360 FCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
             P+EVT  ++LS+C  + +  E  +   +  +++G+   +     +++   + G +  A
Sbjct: 448 VSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEA 507

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHG---LSKESIEVFEKMLSH 459
           ++   S+  + D +   + +GA   HG   L K + E+  +   H
Sbjct: 508 MELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPH 552



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 154/273 (56%), Gaps = 6/273 (2%)

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           RDLV W+ ++SCYA N     AI+ F  M   G   + + F+ +  +C    +  LG+ I
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 286 HGLVIKQS-FDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            G ++K   F+ DV V  +L+DM+ K NG+++ A +VFD M  +NVV+W  M+  F Q G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
             R+AV L  DM+   + PD  TL+ ++S+C  + +    RQ H   +K+G+   + +  
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 404 ALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH-GLSKESIEVFEKMLSH 459
           +L++ Y+KC   GS+  A + F  +   ++++WT+II  Y    G  +E+IE+F +M+  
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            V+P+   F  VL AC++   +  G + + L++
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 136/268 (50%), Gaps = 3/268 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK  A    +  G+Q+++ ++K+ L +   + N ++ +Y +C   ++  K FD
Sbjct: 250 HFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFD 309

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N+V++NT+++       +   +  F  +      ++  TF SLL        I  
Sbjct: 310 VLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGK 369

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++HS ILK GF  N  + +AL+ +Y +CG +E A +VF+E+   +++ W  M++ +A 
Sbjct: 370 GEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAK 429

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVL 299
           +     A+  F+ M   G+  +  T+ +++++C  +G    G +    + ++      + 
Sbjct: 430 HGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRME 489

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAK 327
               +VD+  ++G++++A  + + M  K
Sbjct: 490 HYACVVDLLGRSGHLEEAMELVNSMPFK 517


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/483 (38%), Positives = 294/483 (60%), Gaps = 2/483 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV-SSALVDLYGKCGFVEDARRV 219
           D+  ++ LL+ C +   +E GR +H+ ++   F  N  V  + +V++Y KCG ++DARR+
Sbjct: 86  DYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE+  +D+V W  +++ ++ N     A+ +F  M   G + ++FT SSL+ + G+    
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGL 205

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G Q+H   +K  +   V V ++LVDMYA+ G++D A   FDGM  K+ VSWN ++ G 
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGH 265

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G+G  A+ LL  M + +F P   T +S+LS+C S+    + + VHA+ IK+G++   
Sbjct: 266 ARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIA 325

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            I N L++ Y+K GSI  A + F  + +PD+V+W +++   A HGL KE+++ FE+ML  
Sbjct: 326 FIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P+ I+FL VL+ACSH GL+ EGL YF LM   Y + PD  HY    DLLGRVGLL  
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDR 444

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A   +  MPIEP +   GA +GAC++H ++ L  +AAE+  EL+P       L+SN+YAS
Sbjct: 445 AERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYAS 504

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W DVA++RKMM+++   K P CSW+EI   +H FV++D +HP+   +      + G 
Sbjct: 505 AGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGK 564

Query: 640 MEE 642
           ++E
Sbjct: 565 IKE 567



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 214/385 (55%), Gaps = 4/385 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           ++ YS+ LK   + G ++QG+ +H+H++    L N L LQN ++++Y KC   DD  ++F
Sbjct: 87  YNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMF 146

Query: 122 DEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           DEM  +++VTW  LI+G    N   +    F +ML    + +H T +SLL+A      ++
Sbjct: 147 DEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLD 206

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH+F LK G+  + +V SALVD+Y +CG ++ A+  FD +  +  V WN ++S +A
Sbjct: 207 PGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
               G+ A+ +   M+ +  +  +FT+SS++++C ++G+ + G+ +H  +IK    L   
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  +L+DMYAK G+IDDA RVFD +   +VVSWNTM+ G  Q+G G+E +     ML+  
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E++   +L++C    +  E         K  V+  +      ++   + G +  A 
Sbjct: 387 IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFH 443
           +    +  EP    W +++GA   H
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMH 471



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIE 402
           DG   +  L  + +GS  PD    + +L  C  L    + R VHA+ + +  +   L ++
Sbjct: 67  DGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQ 126

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N ++N Y+KCG +  A + F  +   D+VTWT++I  ++ +   ++++ +F +ML    +
Sbjct: 127 NIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQ 186

Query: 463 PDSIAFLEVLSA--CSHG 478
           P+      +L A    HG
Sbjct: 187 PNHFTLSSLLKASGSEHG 204


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/642 (32%), Positives = 338/642 (52%), Gaps = 44/642 (6%)

Query: 18  PLSYLTPALYQNQTTTITNAQKHDRSVLSS-----QLRNSGTIHES----THSAHSFYSQ 68
           P++ L+ +    QT +++ A        SS     +L  SG + E+       +      
Sbjct: 41  PIASLSLSAQTRQTKSLSFANSSTNRQFSSLHEIKKLCESGNLKEALDFLQRESDDVVLD 100

Query: 69  ALKVSAKFGFLQQ----------GKQLHSHI-MKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           + + S   G L Q          G++LH  +      CN   L  +++ +Y  C +  D 
Sbjct: 101 SAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDS 160

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV-------------RLDHIT 164
             +FD++R +N+  WN ++S           Y R  L ++              + D+ T
Sbjct: 161 RMVFDKLRRKNLFQWNAIVSA----------YTRNELFEDAMSIFSELISVTEHKPDNFT 210

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA-RRVFDEV 223
              +++AC    D+ +G+ +H    K+    + FV +AL+ +YGKCG VE+A +RVFD +
Sbjct: 211 LPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLM 270

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             + +  WN ++  YA N     A+ ++  M   G+  D+FT  SL+ +C  + S   G 
Sbjct: 271 DTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 330

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IHG  ++    +D  +  SL+ +Y   G    A  +FDGM  +++VSWN M+ G+ QNG
Sbjct: 331 EIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 390

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+ L R ML     P E+ +  +  +C  LS     +++H +A+K  +   + + +
Sbjct: 391 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSS 450

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ++I+ Y+K G I  + + F  ++E D+ +W  II  Y  HG  KE++E+FEKML   ++P
Sbjct: 451 SIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKP 510

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D   F  +L ACSH GLV +GL YFN M++ ++I P  EHYTC+ D+LGR G + +A  L
Sbjct: 511 DDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRL 570

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  MP +P S    + + +C++HG++GL +  A KLLELEP KP NY L+SN++A    W
Sbjct: 571 IEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKW 630

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
            DV R+R  M+D    K  GCSWIE+ G++H F+  D   P+
Sbjct: 631 DDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPE 672


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/600 (34%), Positives = 325/600 (54%), Gaps = 3/600 (0%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+   +  A    L+ GK+LHSH +K    + + +    L +Y KC    D +K+ 
Sbjct: 281 SQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVL 340

Query: 122 DEMRVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             M   ++ ++N +I G      G      F+ +L   +  D IT +  L AC       
Sbjct: 341 SSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDL 400

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            GR++H   +K     N  V++A++D+YGKC  + +A  +FD +  RD V WN +++   
Sbjct: 401 EGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACE 460

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   +  +A F  M    M+ D FT+ S++ +C    +   G +IH  +IK     D  
Sbjct: 461 QNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSF 520

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +LVDMY K G I+ A ++ D    K +VSWN ++ GF       +A K    ML+  
Sbjct: 521 VGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMG 580

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  T A++L +C +L+     +Q+HA  IK  +Q+ + I + L++ YSKCG++  + 
Sbjct: 581 VNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQ 640

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F      D VTW +++  YA HGL +E++++FE M    V+P+   F+ VL AC+H G
Sbjct: 641 LMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMG 700

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV +GL YF++M+S+Y + P SEHY+C+ D+LGR G + EA +L+  MP E  +      
Sbjct: 701 LVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNL 760

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  CK+HG++ +A+ A   LL+L+P       L+SN+YA    W +V+ +RKMMR N   
Sbjct: 761 LSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLK 820

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV-LDKEMDE 658
           K PGCSWIE+  E+H F+  D+ HP+   +Y  L  + G M+       C+V LD+E++E
Sbjct: 821 KEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIPDCDVLLDEEVEE 880



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 221/449 (49%), Gaps = 3/449 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G Q+H  ++K G    +   + +L +Y KCK  DD   +F E+  +N V+W+ +I+G + 
Sbjct: 200 GVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQ 259

Query: 142 CGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              NV     F+ M    V +    + SL R+C     + +G+ LHS  LK  FG +  V
Sbjct: 260 NDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIV 319

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A +D+Y KCG + DA++V   +    L  +N ++  YA +  G  A+  F L+   G+
Sbjct: 320 GTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGL 379

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T S  +N+C ++     GRQ+HGL +K     ++ VA +++DMY K   + +A  
Sbjct: 380 GFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASD 439

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  ++ VSWN ++    QNG+  E +     M+     PD+ T  S+L +C     
Sbjct: 440 LFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQA 499

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                ++H   IK+G+     +  AL++ Y KCG I  A +     ++  +V+W +II  
Sbjct: 500 LNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           ++    S+++ + F +ML   V PD+  +  VL  C++   V  G +  +  I    +  
Sbjct: 560 FSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLG-KQIHAQIIKQELQS 618

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           D    + L D+  + G + ++  +    P
Sbjct: 619 DVYICSTLVDMYSKCGNMQDSQLMFEKAP 647



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/544 (25%), Positives = 263/544 (48%), Gaps = 52/544 (9%)

Query: 10  IFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQA 69
           +F  +   PL    P +  N  +T+   Q        +++R    I++     +S     
Sbjct: 14  LFFSYHAIPLFKKIPPIPTNNFSTLAQNQTQP----PAKIRTFSHIYQECSKQNS----- 64

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
                    L  GKQ H+ ++  G      + N ++ +Y+KC   D   K+FD+M +R++
Sbjct: 65  ---------LNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDV 115

Query: 130 VTWNTLISGIINCGGN--VTPYFRRM--------------LLDN---------------- 157
           V++N++ISG  +CG       +F  M               L N                
Sbjct: 116 VSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRC 175

Query: 158 -VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            V  D  +   +L+AC   ++ ++G ++H  ++K GF  +    SAL+ +Y KC  ++D+
Sbjct: 176 GVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDS 235

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF E+  ++ V W+ M++    N      + +F  M+  G+      ++SL  SC  L
Sbjct: 236 LSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAAL 295

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            + +LG+++H   +K +F  D++V T+ +DMYAK G + DA +V   M   ++ S+N ++
Sbjct: 296 SALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAII 355

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
           VG+ ++  G +A+K  + +L+     DE+TL+  L++C S+    E RQVH  A+K+   
Sbjct: 356 VGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISM 415

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + + + NA+++ Y KC ++A A   F  ++  D V+W +II A   +G  +E++  F  M
Sbjct: 416 SNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASM 475

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
           +   + PD   +  VL AC+    ++ G+     +I    +  DS     L D+  + G+
Sbjct: 476 IHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKS-GMGFDSFVGAALVDMYCKCGM 534

Query: 517 LVEA 520
           + +A
Sbjct: 535 IEKA 538



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 191/401 (47%), Gaps = 27/401 (6%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           IH         Y   LK  A    L  G ++H+ I+K G+     +   ++ +Y KC   
Sbjct: 476 IHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMI 535

Query: 115 DDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +  +K+ D    + +V+WN +ISG  ++    +   +F RML   V  D+ T+ ++L  C
Sbjct: 536 EKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTC 595

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                + +G+++H+ I+K     + ++ S LVD+Y KCG ++D++ +F++   RD V WN
Sbjct: 596 ANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWN 655

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M+  YA + LG+ A+ +F  M+L  +K ++ TF S++ +C  +G    G     +++ +
Sbjct: 656 AMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSE 715

Query: 293 -SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVK 350
              D      + +VD+  ++G ID+A  +   M  + + V W  ++     +G+   A K
Sbjct: 716 YGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEK 775

Query: 351 LLRDMLQ-----GSFCPDEVTLASILSSCGSLSISCETRQVHAY------------AIKN 393
             R +LQ      S C   V L++I +  G      E R++  +             +K+
Sbjct: 776 ATRALLQLDPQDSSAC---VLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKD 832

Query: 394 GVQAFLSIENALI---NAYSKCGSIAGALQCFGSVKEPDLV 431
            V AFL  +         Y K G + G +Q  G + + D++
Sbjct: 833 EVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIPDCDVL 873



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 32/295 (10%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG- 323
           TFS +   C    S   G+Q H  +I   F+    V+  L+ MY K   +D AC+VFD  
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 324 ------------------------------MTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
                                         M  ++VVSWN+++ GF QNG+ R+++ +  
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
           +M +     D  +LA +L +CG+L       QVH   +K G    +   +AL+  Y+KC 
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            +  +L  F  + E + V+W+++I     +  + E +E+F++M    V      +  +  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFR 290

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           +C+    +  G    +  +       D    T   D+  + G + +A  +L+SMP
Sbjct: 291 SCAALSALRLGKELHSHALKS-AFGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 334/561 (59%), Gaps = 8/561 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G +  G Q+H+ ++K G    + + N ++ +Y +     D   +FD+M +R+ VTWN++I
Sbjct: 208 GVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMI 267

Query: 137 SGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +G +  G ++  +  F +M L  V+  H+TF S++++C    ++ + + +    LK GF 
Sbjct: 268 AGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFT 327

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
            +  V +AL+    KC  ++DA  +F  +   +++V W  M+S    N   D A+ +F+ 
Sbjct: 328 TDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQ 387

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR EG+K ++FT+S+++    T+       ++H  VIK +++    V T+L+D Y K GN
Sbjct: 388 MRREGVKPNHFTYSAIL----TVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGN 443

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
             DA +VF+ + AK++++W+ M+ G+ Q G+  EA KL   +++    P+E T +S++++
Sbjct: 444 TIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINA 503

Query: 374 CGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C S + + E  +Q HAYAIK  +   L + +AL+  Y+K G+I  A + F   KE DLV+
Sbjct: 504 CASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVS 563

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W S+I  Y+ HG +K+++EVF++M    +  D++ F+ V++AC+H GLV +G +YFN MI
Sbjct: 564 WNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMI 623

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           +D+HI P  +HY+C+ DL  R G+L +A  ++  MP  P +      +GA +VH ++ L 
Sbjct: 624 NDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELG 683

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           + AAEKL+ L+P     Y L+SN+YA+   W +   +RK+M      K PG SWIE+  +
Sbjct: 684 ELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNK 743

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
            ++F++ D +HP +  +Y+ L
Sbjct: 744 TYSFLAGDLTHPLSNQIYSKL 764



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 227/411 (55%), Gaps = 7/411 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q+H   +K GL + +S+   ++ +Y+K +  +D  ++FDEM  RN+V+W +L++G   
Sbjct: 112 GRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G  G V   F +M  + V  +  T ++++ A V    + +G ++H+ ++K GF     V
Sbjct: 172 NGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPV 231

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+ LY + G + DAR VFD++  RD V WN M++ Y  N        +FN M+L G+
Sbjct: 232 FNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K  + TF+S++ SC +L    L + +    +K  F  D +V T+L+   +K   +DDA  
Sbjct: 292 KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALS 351

Query: 320 VFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +F  M   KNVVSW  M+ G  QNG   +AV L   M +    P+  T ++IL+    + 
Sbjct: 352 LFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVF 411

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +S    ++HA  IK   +   S+  AL++AY K G+   A++ F  ++  DL+ W++++ 
Sbjct: 412 VS----EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLA 467

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            YA  G ++E+ ++F +++   ++P+   F  V++AC+     +E  + F+
Sbjct: 468 GYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFH 518



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 176/325 (54%), Gaps = 1/325 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F  +L  +++ D  T + +   C  + D ++GR++H   +K G   +  V ++LVD+Y K
Sbjct: 81  FVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMK 140

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
              V D RRVFDE+  R++V W  +++ Y+ N L      +F  M+ EG+  + +T S++
Sbjct: 141 TENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTV 200

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + +    G   +G Q+H +V+K  F+  + V  SL+ +Y++ G + DA  VFD M  ++ 
Sbjct: 201 IAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDW 260

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+WN+M+ G+ +NG   E  ++   M      P  +T AS++ SC SL      + +   
Sbjct: 261 VTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCK 320

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKE 448
           A+K+G      +  AL+ A SKC  +  AL  F  ++E  ++V+WT++I     +G + +
Sbjct: 321 ALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQ 380

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLS 473
           ++ +F +M    V+P+   +  +L+
Sbjct: 381 AVNLFSQMRREGVKPNHFTYSAILT 405



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 2/263 (0%)

Query: 216 ARRVFDEVLCRDLVL--WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           A  +FD++  R   L   N ++  Y+ +     A+ +F  +    ++ D  T S + N C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
                 KLGRQ+H   +K      V V TSLVDMY K  N++D  RVFD M  +NVVSW 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +++ G+  NG      +L   M      P+  T+++++++  +  +     QVHA  +K+
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G +  + + N+LI+ YS+ G +  A   F  ++  D VTW S+I  Y  +G   E  E+F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 454 EKMLSHAVRPDSIAFLEVLSACS 476
            KM    V+P  + F  V+ +C+
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSCA 306



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 1/197 (0%)

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++  + ++   +EA+ L   +L  S  PDE TL+ + + C         RQVH   +K
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G+   +S+  +L++ Y K  ++    + F  + E ++V+WTS++  Y+++GL     E+
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F +M    V P+      V++A  + G+V  GL+  + M+  +        +  L  L  
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 513 RVGLLVEAYDLLASMPI 529
           R+G+L +A D+   M I
Sbjct: 241 RLGMLRDARDVFDKMEI 257


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/610 (34%), Positives = 340/610 (55%), Gaps = 11/610 (1%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           TT I+   K  RS +S QL     +  +        S  L   +   FL+ GKQ+H+HI+
Sbjct: 218 TTMISGCVKMGRSYVSLQLFYQ-LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + G     SL N ++  YVKC       KLFD M  +NI++W TL+SG            
Sbjct: 277 RYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAME 336

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            F  M    ++ D    +S+L +C     +E G ++H++ +K   G + +V+++L+D+Y 
Sbjct: 337 LFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYA 396

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD-----GAIAVFNLMRLEGMKGDY 263
           KC  + +AR+VFD     D+VL+N M+  Y+   LG       A+ +F+ MR   ++   
Sbjct: 397 KCDCLTEARKVFDIFAADDVVLFNAMIEGYSR--LGTQWELHDALNIFHDMRFRLIRPSL 454

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            TF SL+ +  +L S  L +QIHGL+ K   +LD+   ++L+ +Y+    + D+  VFD 
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDE 514

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  K++V WN+M  G+ Q  +  EA+ L  ++      PDE T   ++++ G+L+     
Sbjct: 515 MKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLG 574

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           ++ H   +K G++    I NAL++ Y+KCGS   A + F S    D+V W S+I +YA H
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANH 634

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503
           G  ++++++ EKM+   + P+ I F+ VLSACSH GLV +GL+ F LM+  + I P++EH
Sbjct: 635 GEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEH 693

Query: 504 YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
           Y C+  LLGR G L EA +L+  MP +P +    + +  C   G++ LA++AAE  +  +
Sbjct: 694 YVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSD 753

Query: 564 PSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSH 623
           P    ++ L+SN+YAS+  W D  ++R+ M+     K PG SWIEI  E+H F+S D+SH
Sbjct: 754 PKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSH 813

Query: 624 PQAVHMYAML 633
            +A  +Y +L
Sbjct: 814 CKANQIYEVL 823



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 206/404 (50%), Gaps = 7/404 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           QL S ++K      + +   ++  Y+K    D    +FD +  ++ VTW T+ISG +  G
Sbjct: 169 QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 144 GNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            +      F +++  NV  D    +++L AC     +E G+++H+ IL+ G   +  + +
Sbjct: 229 RSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMN 288

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            L+D Y KCG V  A ++FD +  ++++ W  ++S Y  N L   A+ +F  M   G+K 
Sbjct: 289 VLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKP 348

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D F  SS++ SC +L + + G Q+H   IK +   D  V  SL+DMYAK   + +A +VF
Sbjct: 349 DMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVF 408

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGRE---AVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           D   A +VV +N M+ G+ + G   E   A+ +  DM      P  +T  S+L +  SL+
Sbjct: 409 DIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLT 468

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
               ++Q+H    K G+   +   +ALI  YS C  +  +   F  +K  DLV W S+  
Sbjct: 469 SLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFS 528

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            Y     ++E++ +F ++     RPD   F+++++A   G L S
Sbjct: 529 GYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAA--GNLAS 570



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 194/370 (52%), Gaps = 11/370 (2%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  LL+     D +     +H  I+  G  L+ ++S+ L++LY + G +  AR+VF+++ 
Sbjct: 47  FARLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMP 106

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            R+LV W+ MVS    +   + ++ VF +  R      + +  SS + +C  L  S  GR
Sbjct: 107 ERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGS--GR 164

Query: 284 ----QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
               Q+   ++K  FD DV V T L+D Y K GNID A  VFD +  K+ V+W TM+ G 
Sbjct: 165 WMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGC 224

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G    +++L   +++G+  PD   L+++LS+C  L      +Q+HA+ ++ G +   
Sbjct: 225 VKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDA 284

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           S+ N LI++Y KCG +  A + F  +   ++++WT+++  Y  + L KE++E+F  M   
Sbjct: 285 SLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKF 344

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD  A   +L++C+    +  G +     I   ++  DS     L D+  +   L E
Sbjct: 345 GLKPDMFACSSILTSCASLHALEFGTQVHAYTIKA-NLGNDSYVTNSLIDMYAKCDCLTE 403

Query: 520 A---YDLLAS 526
           A   +D+ A+
Sbjct: 404 ARKVFDIFAA 413



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 210/420 (50%), Gaps = 32/420 (7%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H  I+  GL     L N ++++Y +        K+F++M  RN+VTW+T++S   + G 
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHG- 124

Query: 145 NVTPYFRRML---LDNVRL-----DHITFNSLLRACVQADDIEVGR----RLHSFILKVG 192
               ++   L   LD  R      +    +S ++AC   D    GR    +L SF++K  
Sbjct: 125 ----FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSR 178

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  + +V + L+D Y K G ++ AR VFD +  +  V W  M+S     C+  G   V  
Sbjct: 179 FDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMIS----GCVKMGRSYVSL 234

Query: 253 LMRLEGMKG----DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +  + M+G    D +  S+++++C  L   + G+QIH  +++   + D  +   L+D Y
Sbjct: 235 QLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSY 294

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K G +  A ++FDGM  KN++SW T++ G+ QN   +EA++L   M +    PD    +
Sbjct: 295 VKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACS 354

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           SIL+SC SL       QVHAY IK  +     + N+LI+ Y+KC  +  A + F      
Sbjct: 355 SILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAAD 414

Query: 429 DLVTWTSIIGAYAFHGLSKE---SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           D+V + ++I  Y+  G   E   ++ +F  M    +RP  + F+ +L A +   L S GL
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASA--SLTSLGL 472


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 308/543 (56%), Gaps = 2/543 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH+ +++ G  + ++L N +L+VY KC   +D + LF+ M  R++++WN+L+SG    G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 145 --NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
              V     RM  D +  D  TF SL+ A      + VG+ +H  IL+ G   +  + ++
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ +Y KCG V  A R+F+ ++ +D++ W  M+S    N   D A+ VF  M    +   
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPS 347

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T +S++ +C  LGS  LG  +HG +++Q   LD+    SLV MYAK G+++ +C VFD
Sbjct: 348 TATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFD 407

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M+ +++VSWN +V G  QNG   +A+ L  +M +    PD +T+ S+L +C S+    +
Sbjct: 408 RMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQ 467

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + +H +  K+ +   + I+ AL++ YSKCG +  A +CF  + + DLV+W+SII  Y  
Sbjct: 468 GKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGS 527

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG  + ++ ++   L   ++P+ + +L +LSACSH GLV +GL +F+ M  D+ I P  E
Sbjct: 528 HGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLE 587

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           H  C+ DLL R G + EAY     M  +P  D LG  + AC+  G++ L    A +++ L
Sbjct: 588 HRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVIL 647

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           +P+   NY  +++ YAS + W  V  +   M+     K+PG S+IE+ G I TF +   S
Sbjct: 648 KPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSS 707

Query: 623 HPQ 625
           HPQ
Sbjct: 708 HPQ 710



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 240/471 (50%), Gaps = 11/471 (2%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           AH+F S  +K          G   H  ++  G  +   +   +++ Y K        K+F
Sbjct: 48  AHTFPS-LVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVF 106

Query: 122 DEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D M  RN+V W T+I      G +   +  +  M    ++   +T   LL   ++   ++
Sbjct: 107 DTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ 166

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
               LH+ +++ GFG +  ++++++++Y KCG VEDA+ +F+ +  RD++ WN +VS YA
Sbjct: 167 C---LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223

Query: 240 LNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
              LG+    + +   M+ +G++ D  TF SLV++        +G+ +HG +++   + D
Sbjct: 224 Q--LGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQD 281

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             + TSL+ MY K GN++ A R+F+GM  K+V+SW  M+ G  QN     AV + R ML+
Sbjct: 282 SHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLK 341

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P   T+AS+L++C  L        VH Y ++  ++  +  +N+L+  Y+KCG +  
Sbjct: 342 SRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQ 401

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           +   F  +   D+V+W +I+  +A +G   +++ +F +M     RPDSI  + +L AC+ 
Sbjct: 402 SCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACAS 461

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            G + +G ++ +  ++   + P     T L D+  + G L  A      MP
Sbjct: 462 IGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP 511



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 187/353 (52%), Gaps = 6/353 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A  + +K G    GK +H HI++ GL     ++  ++ +Y+KC   +   ++F+ M  ++
Sbjct: 256 AAAMQSKLGV---GKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKD 312

Query: 129 IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +++W  +ISG++  +C       FRRML   V     T  S+L AC +     +G  +H 
Sbjct: 313 VISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHG 372

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           +IL+    L+    ++LV +Y KCG +E +  VFD +  RD+V WN +VS +A N     
Sbjct: 373 YILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCK 432

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +FN MR    + D  T  SL+ +C ++G+   G+ IH  V K      +L+ T+LVD
Sbjct: 433 ALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVD 492

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K G++  A + FD M  +++VSW++++ G+G +G G  A+++  D L     P+ V 
Sbjct: 493 MYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVI 552

Query: 367 LASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
             SILS+C    +  +     H+     G++  L     +++  S+ G +  A
Sbjct: 553 YLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEA 605



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 191/351 (54%), Gaps = 5/351 (1%)

Query: 131 TWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           ++N +I+ +   G   +V   +  ML  +   D  TF SL++AC   D    G   H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +  G+  + +++++L++ Y K G  + AR+VFD +  R++V W  M+ CY      D A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           +++N+MR +G++    T   L++  G L    L + +H  VI+  F  DV +A S++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLS--GVLELVHL-QCLHACVIQYGFGSDVALANSMLNVY 191

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K G ++DA  +F+ M A++V+SWN++V G+ Q G+ RE ++LL  M      PD+ T  
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S++S+    S     + VH + ++ G++    IE +LI  Y KCG++  A + F  +   
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           D+++WT++I     +  +  ++ VF +ML   V P +     VL+AC+  G
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELG 362


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/610 (34%), Positives = 342/610 (56%), Gaps = 11/610 (1%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           TT I+   K  RS +S QL     + ++        S  L   +   FL+ GKQ+H+HI+
Sbjct: 218 TTMISGCVKMGRSYVSLQLFYQ-LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + GL    SL N ++  YVKC       KLF+ M  +NI++W TL+SG            
Sbjct: 277 RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAME 336

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            F  M    ++ D    +S+L +C     +  G ++H++ +K   G + +V+++L+D+Y 
Sbjct: 337 LFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYA 396

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG-----AIAVFNLMRLEGMKGDY 263
           KC  + DAR+VFD     D+VL+N M+  Y+   LG       A+ +F  MR   ++   
Sbjct: 397 KCDCLTDARKVFDIFAAADVVLFNAMIEGYSR--LGTQWELHEALNIFRDMRFRLIRPSL 454

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            TF SL+ +  +L S  L +QIHGL+ K   +LD+   ++L+D+Y+    + D+  VFD 
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDE 514

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  K++V WN+M  G+ Q  +  EA+ L  ++      PDE T A+++++ G+L+     
Sbjct: 515 MKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           ++ H   +K G++    I NAL++ Y+KCGS   A + F S    D+V W S+I +YA H
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANH 634

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503
           G  K+++++ EKM+S  + P+ I F+ VLSACSH GLV +GL+ F LM+  + I P++EH
Sbjct: 635 GEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEH 693

Query: 504 YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
           Y C+  LLGR G L +A +L+  MP +P +    + +  C   G++ LA+ AAE  +  +
Sbjct: 694 YVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSD 753

Query: 564 PSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSH 623
           P    ++ ++SN+YAS+  W +  ++R+ M+     K PG SWI I  E+H F+S D+SH
Sbjct: 754 PKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSH 813

Query: 624 PQAVHMYAML 633
            +A  +Y +L
Sbjct: 814 CKANQIYEVL 823



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 220/436 (50%), Gaps = 26/436 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +++ L++ A    L     +H  I+  GL     L N ++++Y +        K+F++M 
Sbjct: 47  FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP 106

Query: 126 VRNIVTWNTLIS-----GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            RN+V+W+T++S     GI      V   F R   D+   +    +S ++AC   D    
Sbjct: 107 ERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP--NEYILSSFIQACSGLDG--R 162

Query: 181 GR----RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           GR    +L SF++K GF  + +V + L+D Y K G ++ AR VFD +  +  V W  M+S
Sbjct: 163 GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMIS 222

Query: 237 CYALNCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
                C+  G    ++ +F  +  + +  D +  S+++++C  L   + G+QIH  +++ 
Sbjct: 223 ----GCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRY 278

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             ++D  +   L+D Y K G +  A ++F+GM  KN++SW T++ G+ QN   +EA++L 
Sbjct: 279 GLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELF 338

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M +    PD    +SIL+SC SL       QVHAY IK  +     + N+LI+ Y+KC
Sbjct: 339 TSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKC 398

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS---KESIEVFEKMLSHAVRPDSIAFL 469
             +  A + F      D+V + ++I  Y+  G      E++ +F  M    +RP  + F+
Sbjct: 399 DCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFV 458

Query: 470 EVLSACSHGGLVSEGL 485
            +L A +   L S GL
Sbjct: 459 SLLRASA--SLTSLGL 472


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 311/557 (55%), Gaps = 3/557 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+  K +H H  + G  + L + N ++H+Y KC + DD   +FD M  R++++WN ++ G
Sbjct: 439 LEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGG 498

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +    CG      F +M  + +  D  T+ SLL      D +E    +H   ++ G   +
Sbjct: 499 LAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISD 558

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V SA + +Y +CG ++DAR +FD++  R +  WN M+   A    G  A+++F  M+ 
Sbjct: 559 FRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQR 618

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG   D  TF +++++     + +  +++H         +D+ V  +LV  Y+K GN+  
Sbjct: 619 EGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKY 677

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  +NV +W  M+ G  Q+G G +A      ML+    PD  T  SILS+C S
Sbjct: 678 AKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAS 737

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  ++VH +A+  G+ + L + NAL++ Y+KCGSI  A   F  + E D+ +WT +
Sbjct: 738 TGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVM 797

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG   E+++ F KM S   +P+  +++ VL+ACSH GLV EG R F  M  DY 
Sbjct: 798 IGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYG 857

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHYTC+ DLLGR GLL EA   + +MPIEP     GA +GAC  +G++ +A++AA
Sbjct: 858 IEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAA 917

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           ++ L+L+P     Y L+SN+YA+   W     +R MM+     K PG SWIE+   IH+F
Sbjct: 918 KERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSF 977

Query: 617 VSSDRSHPQAVHMYAML 633
           V  D SHP++  +YA L
Sbjct: 978 VVGDTSHPESKEIYAQL 994



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 236/412 (57%), Gaps = 8/412 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            KQ+H  I+K G+   L + N++L VY++C       ++FD++  +NI  W T+I G   
Sbjct: 137 AKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAE 196

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   +    + +M  +  + + IT+ S+L+AC    +++ G+++H+ I++ GF  +  V
Sbjct: 197 YGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRV 256

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV++Y KCG +EDA+ +FD+++ R+++ W VM+   A    G  A  +F  M+ EG 
Sbjct: 257 ETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGF 316

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +T+ S++N+  + G+ +  +++H   +     LD+ V  +LV MYAK+G+IDDA  
Sbjct: 317 IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARV 376

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VFDGMT +++ SW  M+ G  Q+G G+EA  L   M +    P+  T  SIL++    S 
Sbjct: 377 VFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST 436

Query: 380 SC--ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S     + VH +A + G  + L I NALI+ Y+KCGSI  A   F  + + D+++W +++
Sbjct: 437 SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMM 496

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           G  A +G   E+  VF +M    + PDS  +L +L+  +HG   ++ L + N
Sbjct: 497 GGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--THGS--TDALEWVN 544



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 259/517 (50%), Gaps = 8/517 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L  +A  G L+  K++HSH +  GL   L + N ++H+Y K  + DD   +FD M 
Sbjct: 323 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT 382

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD--IEVG 181
            R+I +W  +I G+   G     +  F +M  +    +  T+ S+L A   A    +E  
Sbjct: 383 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWV 442

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + +H    + GF  +  + +AL+ +Y KCG ++DAR VFD +  RD++ WN M+   A N
Sbjct: 443 KVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQN 502

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
             G  A  VF  M+ EG+  D  T+ SL+N+ G+  + +   ++H   ++     D  V 
Sbjct: 503 GCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVG 562

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           ++ + MY + G+IDDA  +FD ++ ++V +WN M+ G  Q   GREA+ L   M +  F 
Sbjct: 563 SAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFI 622

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD  T  +ILS+          ++VH++A   G+   L + NAL++ YSKCG++  A Q 
Sbjct: 623 PDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQV 681

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  + E ++ TWT +IG  A HG   ++   F +ML   + PD+  ++ +LSAC+  G +
Sbjct: 682 FDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGAL 741

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
                  N  +S   ++ D      L  +  + G + +A  +   M +E    +    IG
Sbjct: 742 EWVKEVHNHAVS-AGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIG 799

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
               HG  GL        ++ E  KP  Y+ V+ + A
Sbjct: 800 GLAQHGR-GLEALDFFVKMKSEGFKPNGYSYVAVLTA 835



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 219/400 (54%), Gaps = 4/400 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK++H+HI++ G  + + ++  ++++YVKC + +D + +FD+M  RN+++W  +I G
Sbjct: 235 LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGG 294

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           + + G     +  F +M  +    +  T+ S+L A   A  +E  + +HS  +  G  L+
Sbjct: 295 LAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD 354

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +ALV +Y K G ++DAR VFD +  RD+  W VM+   A +  G  A ++F  M+ 
Sbjct: 355 LRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQR 414

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLG--RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            G   +  T+ S++N+     +S L   + +H    +  F  D+ +  +L+ MYAK G+I
Sbjct: 415 NGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSI 474

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           DDA  VFDGM  ++V+SWN M+ G  QNG G EA  +   M Q    PD  T  S+L++ 
Sbjct: 475 DDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTH 534

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
           GS        +VH +A++ G+ +   + +A I+ Y +CGSI  A   F  +    + TW 
Sbjct: 535 GSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWN 594

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           ++IG  A     +E++ +F +M      PD+  F+ +LSA
Sbjct: 595 AMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 188/319 (58%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           + +D  ++ ++L+ C++ +DI + +++H  I+K G   N +V++ L+ +Y +CG ++ AR
Sbjct: 114 IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCAR 173

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           +VFD++L +++ +W  M+  YA     + A+ V++ MR E  + +  T+ S++ +C    
Sbjct: 174 QVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPV 233

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           + K G++IH  +I+  F  DV V T+LV+MY K G+I+DA  +FD M  +NV+SW  M+ 
Sbjct: 234 NLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIG 293

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G    G G+EA  L   M +  F P+  T  SIL++  S       ++VH++A+  G+  
Sbjct: 294 GLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 353

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            L + NAL++ Y+K GSI  A   F  + E D+ +WT +IG  A HG  +E+  +F +M 
Sbjct: 354 DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQ 413

Query: 458 SHAVRPDSIAFLEVLSACS 476
            +   P+   +L +L+A +
Sbjct: 414 RNGCLPNLTTYLSILNASA 432



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 129/233 (55%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+A+  +   +G+  D F++ +++  C       L +Q+H  +IK   + ++ VA  L+ 
Sbjct: 102 AVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLR 161

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y + G +  A +VFD +  KN+  W TM+ G+ + G   +A+++   M Q    P+E+T
Sbjct: 162 VYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             SIL +C         +++HA+ I++G Q+ + +E AL+N Y KCGSI  A   F  + 
Sbjct: 222 YLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMV 281

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           E ++++WT +IG  A +G  +E+  +F +M      P+S  ++ +L+A +  G
Sbjct: 282 ERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAG 334


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/600 (35%), Positives = 328/600 (54%), Gaps = 35/600 (5%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
            L   AK      G Q+H  I+K+G    L +QN ++H Y +C   D   K+FDEM  RN
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERN 199

Query: 129 IVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +V+W ++I G          V  +FR +  + V  + +T   ++ AC + +D+E G +++
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +FI   G  +N  + SALVD+Y KC  ++ A+R+FDE    +L L N M S Y    L  
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ VFNLM   G++ D  +  S ++SC  L +   G+  HG V++  F+    +  +L+
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALI 379

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM---------- 355
           DMY K    D A R+FD M+ K VV+WN++V G+ +NG+   A +    M          
Sbjct: 380 DMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNT 439

Query: 356 -----LQGS--------FC---------PDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
                +QGS        FC          D VT+ SI S+CG L      + ++ Y  KN
Sbjct: 440 IISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN 499

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G+Q  + +   L++ +S+CG    A+  F S+   D+  WT+ IGA A  G ++ +IE+F
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           + M+   ++PD +AF+  L+ACSHGGLV +G   F  M+  + + P+  HY C+ DLLGR
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGR 619

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            GLL EA  L+  MP+EP      + + AC+V G++ +A +AAEK+  L P +  +Y L+
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLL 679

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SNVYAS   W D+A++R  M++    K PG S I+I G+ H F S D SHP+  ++ AML
Sbjct: 680 SNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAML 739



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 229/503 (45%), Gaps = 31/503 (6%)

Query: 21  YLTPALYQNQTTT---ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFG 77
           +L+P +    TTT   + N  K  ++  SS L+N  TI E      S   Q L       
Sbjct: 9   HLSPMVLATTTTTKPSLLNQSKCTKATPSS-LKNCKTIDELKMFHRSLTKQGLDND---- 63

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
            +    +L +   +LG    LS   +V         F++ E             +N+LI 
Sbjct: 64  -VSTITKLVARSCELGTRESLSFAKEV---------FENSESY------GTCFMYNSLIR 107

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G  + G        F RM+   +  D  TF   L AC ++     G ++H  I+K+G+  
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV-FNLM 254
           + FV ++LV  Y +CG ++ AR+VFDE+  R++V W  M+  YA       A+ + F ++
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R E +  +  T   ++++C  L   + G +++  +     +++ L+ ++LVDMY K   I
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D A R+FD   A N+   N M   + + G  REA+ +   M+     PD +++ S +SSC
Sbjct: 288 DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L      +  H Y ++NG +++ +I NALI+ Y KC     A + F  +    +VTW 
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           SI+  Y  +G    + E FE M    +    +++  ++S    G L  E +  F  M S 
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 495 YHILPDSEHYTCLTDLLGRVGLL 517
             +  D      +    G +G L
Sbjct: 464 EGVNADGVTMMSIASACGHLGAL 486


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/600 (35%), Positives = 328/600 (54%), Gaps = 35/600 (5%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
            L   AK      G Q+H  I+K+G    L +QN ++H Y +C   D   K+FDEM  RN
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERN 199

Query: 129 IVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +V+W ++I G          V  +FR +  + V  + +T   ++ AC + +D+E G +++
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +FI   G  +N  + SALVD+Y KC  ++ A+R+FDE    +L L N M S Y    L  
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ VFNLM   G++ D  +  S ++SC  L +   G+  HG V++  F+    +  +L+
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALI 379

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM---------- 355
           DMY K    D A R+FD M+ K VV+WN++V G+ +NG+   A +    M          
Sbjct: 380 DMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNT 439

Query: 356 -----LQGS--------FC---------PDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
                +QGS        FC          D VT+ SI S+CG L      + ++ Y  KN
Sbjct: 440 IISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN 499

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G+Q  + +   L++ +S+CG    A+  F S+   D+  WT+ IGA A  G ++ +IE+F
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           + M+   ++PD +AF+  L+ACSHGGLV +G   F  M+  + + P+  HY C+ DLLGR
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGR 619

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            GLL EA  L+  MP+EP      + + AC+V G++ +A +AAEK+  L P +  +Y L+
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLL 679

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SNVYAS   W D+A++R  M++    K PG S I+I G+ H F S D SHP+  ++ AML
Sbjct: 680 SNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAML 739



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 229/503 (45%), Gaps = 31/503 (6%)

Query: 21  YLTPALYQNQTTT---ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFG 77
           +L+P +    TTT   + N  K  ++  SS L+N  TI E      S   Q L       
Sbjct: 9   HLSPMVLATTTTTKPSLLNQSKCTKATPSS-LKNCKTIDELKMFHRSLTKQGLDND---- 63

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
            +    +L +   +LG    LS   +V         F++ E             +N+LI 
Sbjct: 64  -VSTITKLVARSCELGTRESLSFAKEV---------FENSESY------GTCFMYNSLIR 107

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G  + G        F RM+   +  D  TF   L AC ++     G ++H  I+K+G+  
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV-FNLM 254
           + FV ++LV  Y +CG ++ AR+VFDE+  R++V W  M+  YA       A+ + F ++
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R E +  +  T   ++++C  L   + G +++  +     +++ L+ ++LVDMY K   I
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D A R+FD   A N+   N M   + + G  REA+ +   M+     PD +++ S +SSC
Sbjct: 288 DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L      +  H Y ++NG +++ +I NALI+ Y KC     A + F  +    +VTW 
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           SI+  Y  +G    + E FE M    +    +++  ++S    G L  E +  F  M S 
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463

Query: 495 YHILPDSEHYTCLTDLLGRVGLL 517
             +  D      +    G +G L
Sbjct: 464 EGVNADGVTMMSIASACGHLGAL 486


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/576 (34%), Positives = 332/576 (57%), Gaps = 16/576 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF-DEMRVRNIVTWNTLIS 137
           L +GKQLHS ++  G          ++++Y KC    +   +F D    RN+  +N +IS
Sbjct: 27  LNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIIS 86

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G ++ G       ++++M L+ V  D  TF  ++R C +  ++   +++H  +LK+G  L
Sbjct: 87  GFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLEL 143

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCLGDGAIAVFNLM 254
           + FV SALV+ Y K G +EDA++VF E+  RD+VLWN M++ YA + CL D A+ VF  M
Sbjct: 144 DVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCL-DEALEVFRRM 202

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            ++G+    FT + +++   + G    G+ +HG+V+K  +D  V V+ +L+DMY K  +I
Sbjct: 203 HVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHI 262

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DA  +F+ +  K++ SWN+++    Q GD    ++L   ML     PD VT+ ++L +C
Sbjct: 263 GDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPAC 322

Query: 375 GSLSISCETRQVHAYAI--------KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             L+     R++H Y I        +NG    L + NA+++ Y+KCGS+  AL+ F S+ 
Sbjct: 323 SHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMS 382

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           + D+ +W  +I  Y  HG + E++ +F +M     +P+ +  + VLSAC+H G VS G  
Sbjct: 383 KKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRL 442

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +   M S + ++P  EHYTC+ D+LGR G L +AY+++  MPI+       A +GAC++H
Sbjct: 443 FLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLH 502

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G+  LA+ AA ++L+LEP    +Y L+SNVY     + +V  +RK M++    K PGCSW
Sbjct: 503 GNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSW 562

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           IE+   +H F + DR+H +   +   LC +  +++E
Sbjct: 563 IELKDGVHVFRTGDRTHSELNALTNQLCDIGFILDE 598



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 174/327 (53%), Gaps = 4/327 (1%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF-DEVLC 225
           + L++C    ++  G++LHS ++  GF  +    ++L+++Y KCG + +A  VF D    
Sbjct: 16  AFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHE 75

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R++  +N ++S +  N L       +  MRLEG+  D +TF  +V +C  +   K   +I
Sbjct: 76  RNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK---KI 132

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           HG ++K   +LDV V ++LV+ Y KNG+++DA +VF  ++ ++VV WN M+ G+ + G  
Sbjct: 133 HGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCL 192

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+++ R M      P   T+  ILS   S       + VH   +K G  + +S+ NAL
Sbjct: 193 DEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNAL 252

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y KC  I  AL  F  + E D+ +W SII  +   G    ++ +F+KML   + PD 
Sbjct: 253 IDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDL 312

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +    VL ACSH   +  G      MI
Sbjct: 313 VTITTVLPACSHLAALMHGREIHGYMI 339



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 160/331 (48%), Gaps = 16/331 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A  G L  GK +H  +MK+G  + +S+ N ++ +Y KCK   D   +F+ +  ++I
Sbjct: 218 LSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDI 277

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            +WN++IS    CG +      F +ML   +  D +T  ++L AC     +  GR +H +
Sbjct: 278 FSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGY 337

Query: 188 ILKVGFGL--------NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           ++  G G         N  VS+A++D+Y KCG + +A ++FD +  +D+  WN+M+  Y 
Sbjct: 338 MIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYG 397

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           ++     A+ +F+ M     K +  T   ++++C   G    GR      ++ +F +   
Sbjct: 398 MHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQ-MESTFGVIPT 456

Query: 300 VA--TSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +   T ++DM  + G+++DA  +   M  + N V W  ++     +G+   A    R +L
Sbjct: 457 IEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVL 516

Query: 357 Q--GSFCPDEVTLASILSSCGSLSISCETRQ 385
           Q     C   V ++++    G      E R+
Sbjct: 517 QLEPEHCGSYVLMSNVYGVIGRYEEVLEVRK 547


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 332/604 (54%), Gaps = 43/604 (7%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQN 102
           +L   + N    H ST      Y   L+       L   K LH+H+++    C  +SL N
Sbjct: 51  ILQDMVENGIWPHSST------YDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGN 104

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRL 160
           +++ +YVK  +  +  ++FDEM V+N+V+W  +I+       G     +F  M    ++ 
Sbjct: 105 KLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQP 164

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +H TF S+L AC    D+EV    H  I+K GF  N FV + LVD+Y K G +E AR +F
Sbjct: 165 NHFTFASILPACT---DLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELF 221

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN---SCGTLG 277
           D++  RD+V WN M++ Y  N L + A+ +F     E  K D  T+++++     CG + 
Sbjct: 222 DKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQ----EIPKRDVITWNTMMAGYAQCGDVE 277

Query: 278 SS-----KLGRQ--------IHGLV----IKQSFDL-------DVLVATSLVDMYAKNGN 313
           ++     K+  Q        I G V    +K++F L       +V+   +++  +A+NG 
Sbjct: 278 NAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQ 337

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +++A ++F  M   NVVSWN M+ G+ QNG    A+KL   M      P+  T A +L +
Sbjct: 338 VEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPA 397

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C +L++  +  + H   I++G Q+ + + N L+  Y+KCGSI  A + F  +++ D  + 
Sbjct: 398 CAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASL 457

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           +++I  YA +G SKES+E+FE+M    ++PD + F+ VLSAC H GLV EG +YF++M  
Sbjct: 458 SAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTR 517

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            YHI P  EHY C+ DLLGR G   EA DL+  MPI+P +D  G+ + AC+ H +I L +
Sbjct: 518 FYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGE 577

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             A+ L+ L P  P  Y L+SN+YA+   W D+  +R  M+D    K  GCSWI I  ++
Sbjct: 578 KVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQV 637

Query: 614 HTFV 617
           H F+
Sbjct: 638 HAFL 641



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ-AFL 399
           + G  REA+ +L+DM++    P   T  S+L  C +     + + +HA+ I+   +   +
Sbjct: 41  KQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDI 100

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           S+ N L++ Y K GS+  A + F  +   ++V+WT++I AYA H   +E++  F +M   
Sbjct: 101 SLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDV 160

Query: 460 AVRPDSIAFLEVLSACS--------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
            ++P+   F  +L AC+        H  +V  G    N+ + +            L D+ 
Sbjct: 161 GIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFES-NVFVGN-----------GLVDMY 208

Query: 512 GRVGLLVEAYDLLASMP 528
            + G +  A +L   MP
Sbjct: 209 AKRGCIEFARELFDKMP 225


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 324/542 (59%), Gaps = 4/542 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI-- 139
           G+Q+H +++K GL +++++ N ++ VY KC    D  ++FDE+  RN V+WN +I+ +  
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAY 187

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           +    +    FR M+   V+ + +TF+S+L   V+    + G+ +H F L+ G   + FV
Sbjct: 188 LERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFV 247

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++AL+D+Y K G    A  VF+++  +++V WN MV+ +A N L   A+ +   M+ +G 
Sbjct: 248 ANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGE 307

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             +  TF++++ +C  +G  + G++IH   I+    +D+ V+ +L DMYAK G ++ A R
Sbjct: 308 IPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARR 367

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  ++ ++ VS+N +++G+ Q  +  E+++L  +M       D V+   ++S+C +L+ 
Sbjct: 368 VFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAA 426

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + ++VH  A++  +   L I NAL++ Y KCG I  A + F  +   D  +W S+I  
Sbjct: 427 LKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILG 486

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y   G    +I +FE M    V  DS++++ VLSACSHGGLV EG +YF  M    +I P
Sbjct: 487 YGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM-QVQNIKP 545

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
              HY C+ DLLGR GL+ EA  L+ S+PIEP ++  GA +GAC++HG I LA WAAE L
Sbjct: 546 TQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHL 605

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
            +L+P     Y+++SN+YA    W +  ++RK+M+     K PGCSW++I  ++H FV+ 
Sbjct: 606 FKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAG 665

Query: 620 DR 621
           +R
Sbjct: 666 ER 667



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 235/430 (54%), Gaps = 6/430 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A    +Q+G+++H  + KLG  + + + N +L  Y  C    D++++FDEM  R++
Sbjct: 14  LKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDV 73

Query: 130 VTWNTLISGIINCGG----NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           V+WN++I G+ +  G     +  +    L    R + ++  S+L  C   +D   GR++H
Sbjct: 74  VSWNSVI-GVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIH 132

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            +++K G      V +ALVD+YGKCG+V+D+RRVFDE+  R+ V WN +++  A      
Sbjct: 133 CYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQ 192

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F LM   G+K +  TFSS++     L     G++IHG  ++   + D+ VA +L+
Sbjct: 193 DALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALI 252

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMYAK+G    A  VF+ +  KN+VSWN MV  F QN     AV L+R M      P+ V
Sbjct: 253 DMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSV 312

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T  ++L +C  +      +++HA AI+ G    L + NAL + Y+KCG +  A + F  +
Sbjct: 313 TFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KI 371

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              D V++  +I  Y+      ES+ +F +M    ++ D ++++ V+SAC++   + +G 
Sbjct: 372 SLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGK 431

Query: 486 RYFNLMISDY 495
               L +  +
Sbjct: 432 EVHGLAVRKH 441



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 186/328 (56%), Gaps = 1/328 (0%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           VRLD  TF  +L+AC  +  ++ GR +H  + K+GF  + FV + L+  YG CG ++D +
Sbjct: 3   VRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVK 62

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTL 276
           RVFDE+L RD+V WN ++  ++++     AI +F  M L  G + +  +  S++  C  L
Sbjct: 63  RVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGL 122

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                GRQIH  V+K   D  V V  +LVD+Y K G + D+ RVFD ++ +N VSWN ++
Sbjct: 123 EDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAII 182

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
                    ++A+++ R M+ G   P+ VT +S+L     L +    +++H ++++ G++
Sbjct: 183 TSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLE 242

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + + + NALI+ Y+K G    A   F  + E ++V+W +++  +A + L   ++++  +M
Sbjct: 243 SDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQM 302

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +    P+S+ F  VL AC+  G +  G
Sbjct: 303 QADGEIPNSVTFTNVLPACARIGFLRPG 330



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 212/414 (51%), Gaps = 12/414 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L V  +      GK++H   ++ GL + + + N ++ +Y K         +F+++ 
Sbjct: 213 FSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIG 272

Query: 126 VRNIVTWNTLISGIINCGGN-----VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +NIV+WN +++   N   N          R+M  D    + +TF ++L AC +   +  
Sbjct: 273 EKNIVSWNAMVA---NFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRP 329

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G+ +H+  ++ G  ++ FVS+AL D+Y KCG +  ARRVF ++  RD V +N+++  Y+ 
Sbjct: 330 GKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQ 388

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                 ++ +F  M ++GMK D  ++  ++++C  L + K G+++HGL +++     + +
Sbjct: 389 TTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFI 448

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           A +L+D Y K G ID A +VF  + +++  SWN+M++G+G  G+   A+ L   M +   
Sbjct: 449 ANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGV 508

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D V+  ++LS+C    +  E ++   +     ++        +++   + G I  A++
Sbjct: 509 EYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVK 568

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
              S+  EPD   W +++GA   HG  + +    E +    ++P    +  VLS
Sbjct: 569 LIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFK--LKPQHSGYYSVLS 620



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 127/216 (58%), Gaps = 1/216 (0%)

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G++ D  TF  ++ +C    S + GR+IHG+V K  FD DV V  +L+  Y   G + D 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGS 376
            RVFD M  ++VVSWN+++  F  +G   EA+ L  +M L+  F P+ V++ S+L  C  
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      RQ+H Y +K G+ + +++ NAL++ Y KCG +  + + F  + E + V+W +I
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           I + A+   +++++E+F  M+   V+P+S+ F  +L
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSML 217


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/483 (38%), Positives = 294/483 (60%), Gaps = 2/483 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV-SSALVDLYGKCGFVEDARRV 219
           D+  ++ LL+ C +   +E GR +H+ ++   F  N  V  + +V++Y KCG ++DARR+
Sbjct: 86  DYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE+  +D+V W  +++ ++ N     A+ +F  M   G++ ++FT SSL+ + G+    
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGL 205

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G Q+H   +K  +   V V ++LVDMYA+ G++D A   FDGM  K+ VSWN ++ G 
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGH 265

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G+G  A+ LL  M + +F P   T +S+ S+C S+    + + VHA+ IK+G++   
Sbjct: 266 ARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIA 325

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            I N L++ Y+K GSI  A + F  + +PD+V+W +++   A HGL KE+++ FE+ML  
Sbjct: 326 FIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P+ I+FL VL+ACSH GL+ EGL YF LM   Y + PD  HY    DLLGRVGLL  
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDR 444

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A   +  MPIEP +   GA +GAC++H ++ L  +AAE+  EL+P       L+SN+YAS
Sbjct: 445 AERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYAS 504

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W DVA++RKMM+++   K P CSW+EI   +H FV++D +HPQ   +      + G 
Sbjct: 505 AGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGK 564

Query: 640 MEE 642
           ++E
Sbjct: 565 IKE 567



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 214/385 (55%), Gaps = 4/385 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           ++ YS+ LK   + G ++QG+ +H+H++    L N L LQN ++++Y KC   DD  ++F
Sbjct: 87  YNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMF 146

Query: 122 DEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           DEM  +++VTW  LI+G    N   +    F +ML   ++ +H T +SLL+A      ++
Sbjct: 147 DEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLD 206

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH+F LK G+  + +V SALVD+Y +CG ++ A+  FD +  +  V WN ++S +A
Sbjct: 207 PGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
               G+ A+ +   M+ +  +  +FT+SS+ ++C ++G+ + G+ +H  +IK    L   
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  +L+DMYAK G+IDDA RVFD +   +VVSWNTM+ G  Q+G G+E +     ML+  
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E++   +L++C    +  E         K  V+  +      ++   + G +  A 
Sbjct: 387 IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFH 443
           +    +  EP    W +++GA   H
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMH 471



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIE 402
           DG   +  L  + +GS  PD    + +L  C  L    + R VHA+ + +  +   L ++
Sbjct: 67  DGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQ 126

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N ++N Y+KCG +  A + F  +   D+VTWT++I  ++ +   ++++ +F +ML   ++
Sbjct: 127 NIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQ 186

Query: 463 PDSIAFLEVLSA 474
           P+      +L A
Sbjct: 187 PNHFTLSSLLKA 198


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 308/521 (59%), Gaps = 6/521 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           K+FD+M  RN+VTW  +I+    + C  +    F  M L     D  T++S+L AC +  
Sbjct: 204 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 263

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNV 233
            + +G++LHS ++++G  L+  V  +LVD+Y KC   G V+D+R+VF+++   +++ W  
Sbjct: 264 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 323

Query: 234 MVSCYALNCLGDG-AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++ Y  +   D  AI +F  M    ++ ++F+FSS++ +CG L     G Q++   +K 
Sbjct: 324 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 383

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                  V  SL+ MYA++G ++DA + FD +  KN+VS+N +V G+ +N    EA  L 
Sbjct: 384 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 443

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++          T AS+LS   S+    +  Q+H   +K G ++   I NALI+ YS+C
Sbjct: 444 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 503

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+I  A Q F  +++ ++++WTS+I  +A HG +  ++E+F KML    +P+ I ++ VL
Sbjct: 504 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 563

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH G++SEG ++FN M  ++ I+P  EHY C+ DLLGR GLLVEA + + SMP+   
Sbjct: 564 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 623

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +      +GAC+VHG+  L + AAE +LE EP  P  Y L+SN++AS   W DV ++RK 
Sbjct: 624 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 683

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K  GCSWIE+   +H F   + SHPQA  +Y  L
Sbjct: 684 MKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQEL 724



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 192/332 (57%), Gaps = 7/332 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M   N   D  T++ LL++C++  + ++G+ +H  +++ G  L+  V + L+ LY KCG 
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 213 VEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            E AR +F+ +   RDLV W+ MVSC+A N +   AI  F  M   G   + + F++++ 
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 272 SCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNV 329
           +C     + +G  I+G V+K  + + DV V   L+DM+ K +G++  A +VFD M  +N+
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+W  M+  F Q G  R+A+ L  DM    + PD  T +S+LS+C  L +    +Q+H+ 
Sbjct: 215 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 274

Query: 390 AIKNGVQAFLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG-L 445
            I+ G+   + +  +L++ Y+KC   GS+  + + F  + E ++++WT+II AY   G  
Sbjct: 275 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 334

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            KE+IE+F KM+S  +RP+  +F  VL AC +
Sbjct: 335 DKEAIELFCKMISGHIRPNHFSFSSVLKACGN 366



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 133/241 (55%), Gaps = 3/241 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A +  +LM  +    D  T+S L+ SC    + +LG+ +H  +++   +LD +V  +L+ 
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 307 MYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +Y+K G+ + A  +F+GM   +++VSW+ MV  F  N    +A+    DML+  F P+E 
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSK-CGSIAGALQCFG 423
             A+++ +C + + +     ++ + +K G ++A + +   LI+ + K  G +  A + F 
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E +LVTWT +I  +A  G ++++I++F  M      PD   +  VLSAC+  GL++ 
Sbjct: 208 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 267

Query: 484 G 484
           G
Sbjct: 268 G 268



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 147/303 (48%), Gaps = 19/303 (6%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK          G+Q++S+ +KLG+ +   + N ++ +Y +    +D  K FD
Sbjct: 354 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 413

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N+V++N ++ G      +   +  F  +    + +   TF SLL        +  
Sbjct: 414 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 473

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H  +LK G+  N  + +AL+ +Y +CG +E A +VF+E+  R+++ W  M++ +A 
Sbjct: 474 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 533

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR-------QIHGLVIKQS 293
           +     A+ +F+ M   G K +  T+ +++++C  +G    G+       + HG+V +  
Sbjct: 534 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 593

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD---GREAV 349
                     +VD+  ++G + +A    + M    + + W T++     +G+   GR A 
Sbjct: 594 H------YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 647

Query: 350 KLL 352
           +++
Sbjct: 648 EMI 650



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 2/183 (1%)

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A   L  M Q +  PD  T + +L SC         + VH   +++G++    + N LI+
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 408 AYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            YSKCG    A   F G   + DLV+W++++  +A + +  ++I  F  ML     P+  
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR-VGLLVEAYDLLA 525
            F  V+ ACS+      G   +  ++   ++  D      L D+  +  G L  AY +  
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 526 SMP 528
            MP
Sbjct: 208 KMP 210


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 325/572 (56%), Gaps = 6/572 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+++H H+++ G  + + + N ++ +YVKC   +    +FD+M  R+ ++WN +ISG
Sbjct: 223 LVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISG 282

Query: 139 IINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G  +     F  M+   V  D +T  S++ AC    D  +GR++H ++L+  FG +
Sbjct: 283 YFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRD 342

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL-GDGAIAVFNLMR 255
             + ++L+ +Y   G +E+A  VF    CRDLV W  M+S Y  NCL    A+  + +M 
Sbjct: 343 PSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYE-NCLMPQKALETYKMME 401

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+  D  T + ++++C  L +  +G  +H +  ++      +VA SL+DMYAK   ID
Sbjct: 402 AEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCID 461

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  +F     KN+VSW ++++G   N    EA+   R+M++    P+ VTL  +LS+C 
Sbjct: 462 KALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVTLVCVLSACA 520

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            +      +++HA+A++ GV     + NA+++ Y +CG +  A + F SV + ++ +W  
Sbjct: 521 RIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNI 579

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++  YA  G    + E+F++M+   V P+ + F+ +L ACS  G+V+EGL YFN M   Y
Sbjct: 580 LLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKY 639

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I+P+ +HY C+ DLLGR G L EAY+ +  MP++P     GA + +C++H  + L + A
Sbjct: 640 SIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELA 699

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           AE + + + +    Y L+SN+YA    W  VA +RKMMR N     PGCSW+E+ G +H 
Sbjct: 700 AENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHA 759

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEENNVSG 647
           F+SSD  HPQ   + A+L   +  M+E  V G
Sbjct: 760 FLSSDNFHPQIKEINALLERFYKKMKEAGVEG 791



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 218/407 (53%), Gaps = 3/407 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           ++G +++S++        L L N +L ++V+     D   +F  M  RN+ +WN L+ G 
Sbjct: 123 KEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGY 182

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G        + RML   V+ D  TF  +LR C    ++  GR +H  +++ GF  + 
Sbjct: 183 AKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDV 242

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            V +AL+ +Y KCG V  AR VFD++  RD + WN M+S Y  N +    + +F +M   
Sbjct: 243 DVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKY 302

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  D  T +S++ +C  LG  +LGRQIHG V++  F  D  +  SL+ MY+  G I++A
Sbjct: 303 PVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEA 362

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             VF     +++VSW  M+ G+      ++A++  + M      PDE+T+A +LS+C  L
Sbjct: 363 ETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCL 422

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                   +H  A + G+ ++  + N+LI+ Y+KC  I  AL+ F S  E ++V+WTSII
Sbjct: 423 CNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSII 482

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
                +    E++  F +M+   ++P+S+  + VLSAC+  G ++ G
Sbjct: 483 LGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCG 528



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 173/313 (55%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            + +L+R C      + G R++S++      L+  + +AL+ ++ + G + DA  VF  +
Sbjct: 108 AYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRM 167

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R+L  WNV+V  YA   L D A+ +++ M   G+K D +TF  ++ +CG + +   GR
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGR 227

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IH  VI+  F+ DV V  +L+ MY K G+++ A  VFD M  ++ +SWN M+ G+ +NG
Sbjct: 228 EIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENG 287

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              E ++L   M++    PD +T+ S++++C  L      RQ+H Y ++       SI N
Sbjct: 288 VCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHN 347

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +LI  YS  G I  A   F   +  DLV+WT++I  Y    + ++++E ++ M +  + P
Sbjct: 348 SLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMP 407

Query: 464 DSIAFLEVLSACS 476
           D I    VLSACS
Sbjct: 408 DEITIAIVLSACS 420



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 134/285 (47%), Gaps = 3/285 (1%)

Query: 238 YALNCLG--DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           Y L  LG  D A++  + M    +  +   + +L+  C    + K G +++  V      
Sbjct: 79  YQLCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSH 138

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           L + +  +L+ M+ + GN+ DA  VF  M  +N+ SWN +V G+ + G   EA+ L   M
Sbjct: 139 LSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRM 198

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L     PD  T   +L +CG +      R++H + I+ G ++ + + NALI  Y KCG +
Sbjct: 199 LWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDV 258

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F  +   D ++W ++I  Y  +G+  E + +F  M+ + V PD +    V++AC
Sbjct: 259 NTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITAC 318

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
              G    G R  +  +       D   +  L  +   VGL+ EA
Sbjct: 319 ELLGDDRLG-RQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEA 362



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK++H+H ++ G+     + N +L +YV+C   +   K F  +    +
Sbjct: 516 LSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEV 574

Query: 130 VTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHS 186
            +WN L++G      G + T  F+RM+  NV  + +TF S+L AC ++  +  G    +S
Sbjct: 575 TSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNS 634

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV-SCYALNCLG 244
              K     N    + +VDL G+ G +E+A     ++  + D  +W  ++ SC   + + 
Sbjct: 635 MKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVE 694

Query: 245 DGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGS----SKLGRQIHGLVI 290
            G +A  N+ + +    G Y   S+L    G         K+ RQ +GL++
Sbjct: 695 LGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQ-NGLIV 744


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 311/521 (59%), Gaps = 6/521 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           K+F++M  RN VTW  +I+ ++  G  G     F  M+L     D  T + ++ AC   +
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANME 285

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNV 233
            + +G++LHS  ++ G  L+  V   L+++Y KC   G +  AR++FD++L  ++  W  
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 234 MVSCYALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           M++ Y       + A+ +F  M L  +  ++FTFSS + +C  L + ++G Q+    +K 
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            F     VA SL+ MYA++G IDDA + FD +  KN++S+NT++  + +N +  EA++L 
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++          T AS+LS   S+    +  Q+HA  IK+G++   S+ NALI+ YS+C
Sbjct: 466 NEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC 525

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+I  A Q F  +++ ++++WTSII  +A HG + +++E+F KML   VRP+ + ++ VL
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVL 585

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH GLV+EG ++F  M +++ ++P  EHY C+ D+LGR G L EA   + SMP +  
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKAD 645

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +     F+GAC+VHG++ L K AA+ ++E EP  P  Y L+SN+YAS   W +V+ +RK 
Sbjct: 646 ALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKA 705

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K  GCSW+E+  ++H F   D SHP+A  +Y  L
Sbjct: 706 MKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDEL 746



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 218/439 (49%), Gaps = 9/439 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +H+ +H     YS  LK   +      G  +H  + +  L       N ++ +Y KC  +
Sbjct: 58  VHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQW 117

Query: 115 DDMEKLFDEM-RVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
           +    +F  M   R++++W+ ++S   N   G      F  M+ +    +   F +  RA
Sbjct: 118 EKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRA 177

Query: 172 CVQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLV 229
           C  A+ + VG  +  F++K G+   +  V   L+D++ K  G +  A +VF+++  R+ V
Sbjct: 178 CSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAV 237

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W +M++          AI +F  M L G + D FT S ++++C  +    LG+Q+H   
Sbjct: 238 TWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQA 297

Query: 290 IKQSFDLDVLVATSLVDMYAK---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-G 345
           I+    LD  V   L++MYAK   +G++  A ++FD +   NV SW  M+ G+ Q G   
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+ L R M+     P+  T +S L +C +L+      QV  +A+K G  +   + N+L
Sbjct: 358 EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y++ G I  A + F  + E +L+++ ++I AYA +  S+E++E+F ++    +   +
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 466 IAFLEVLSACSHGGLVSEG 484
             F  +LS  +  G + +G
Sbjct: 478 FTFASLLSGAASIGTIGKG 496



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 175/335 (52%), Gaps = 7/335 (2%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T++  L+ C++    ++G  +H  + +    L+    ++L+ LY KCG  E A  +F
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 221 DEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
             +   RDL+ W+ MVSC+A N +G  A+  F  M   G   + + F++   +C T    
Sbjct: 125 QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFV 184

Query: 280 KLGRQIHGLVIKQSF-DLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVV 337
            +G  I G V+K  +   DV V   L+DM+ K  G++  A +VF+ M  +N V+W  M+ 
Sbjct: 185 SVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMIT 244

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
              Q G   EA+ L  +M+   + PD  TL+ ++S+C ++ +    +Q+H+ AI++G+  
Sbjct: 245 RLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTL 304

Query: 398 FLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH-GLSKESIEVF 453
              +   LIN Y+KC   GS+  A + F  + + ++ +WT++I  Y    G  +E++++F
Sbjct: 305 DRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLF 364

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
             M+   V P+   F   L AC++   +  G + F
Sbjct: 365 RGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 147/297 (49%), Gaps = 7/297 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK  A    L+ G+Q+ +H +KLG  +   + N ++ +Y +    DD  K FD
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD 435

Query: 123 EMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N++++NT+I               F  +    +     TF SLL        I  
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H+ ++K G  LN  V +AL+ +Y +CG +E A +VF+++  R+++ W  +++ +A 
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVL 299
           +     A+ +F+ M  EG++ +  T+ +++++C  +G    G +    +  +      + 
Sbjct: 556 HGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRME 615

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLL 352
               +VD+  ++G++ +A +  + M  K + + W T +     +G+   G+ A K++
Sbjct: 616 HYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMI 672



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI+    M  +G   D  T+S  +  C    S  +G  +H  + +    LD +   SL+ 
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 307 MYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +Y+K G  + A  +F  M ++++++SW+ MV  F  N  G  A+    DM++  + P+E 
Sbjct: 110 LYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKC-GSIAGALQCFG 423
             A+   +C +         +  + +K G +Q+ + +   LI+ + K  G +  A + F 
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            + E + VTWT +I      G + E+I++F +M+     PD      V+SAC++  L+
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELL 287



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG   +A+  L  M+     PD  T +  L  C           VH    ++ +Q     
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 402 ENALINAYSKCGSIAGA---LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            N+LI+ YSKCG    A    Q  GS +  DL++W++++  +A + +   ++  F  M+ 
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSR--DLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL--GRVGL 516
           +   P+   F     ACS    VS G   F  ++   ++  D      L D+   GR G 
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGR-GD 220

Query: 517 LVEAYDLLASMP 528
           LV A+ +   MP
Sbjct: 221 LVSAFKVFEKMP 232


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/482 (39%), Positives = 292/482 (60%), Gaps = 1/482 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +H  + SLL +C+ A  +E G++LH+ + ++G   N  +++ LV+ Y  C  + +A  +F
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D++   +L LWNV++  YA N   + AI++++ M   G+K D FT   ++ +C  L +  
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR IH  VI+  ++ DV V  +LVDMYAK G + DA  VFD +  ++ V WN+M+  + 
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYA 236

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QNG   E++ L  +M      P E TL +++SS   ++     R++H +  ++G Q    
Sbjct: 237 QNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDK 296

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           ++ ALI+ Y+KCGS+  A   F  ++E  +V+W +II  YA HGL+ E++++FE+M+  A
Sbjct: 297 VKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA 356

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            +PD I F+  L+ACS G L+ EG   +NLM+ D  I P  EHYTC+ DLLG  G L EA
Sbjct: 357 -QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEA 415

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           YDL+  M + P S   GA + +CK HG++ LA+ A EKL+ELEP    NY +++N+YA  
Sbjct: 416 YDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQS 475

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W  VARLR++M D    K   CSWIE+  +++ F+S D SHP +  +YA L  + GLM
Sbjct: 476 GKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLM 535

Query: 641 EE 642
            E
Sbjct: 536 RE 537



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 214/411 (52%), Gaps = 7/411 (1%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S+ S H +Y+  L+       L+ GKQLH+ + +LG+   L L  ++++ Y  C +  + 
Sbjct: 53  SSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNA 112

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQA 175
             LFD++   N+  WN LI      G + T    + +ML   ++ D+ T   +L+AC   
Sbjct: 113 HHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSAL 172

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
             I  GR +H  +++ G+  + FV +ALVD+Y KCG V DAR VFD+++ RD VLWN M+
Sbjct: 173 STIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSML 232

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + YA N   D ++++   M  +G++    T  ++++S   +     GR+IHG   +  F 
Sbjct: 233 AAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQ 292

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            +  V T+L+DMYAK G++  AC +F+ +  K VVSWN ++ G+  +G   EA+ L   M
Sbjct: 293 YNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERM 352

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGS 414
           ++ +  PD +T    L++C    +  E R ++   +++  +   +     +++    CG 
Sbjct: 353 MKEAQ-PDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQ 411

Query: 415 IAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +  A      +   PD   W +++ +   HG  + +    EK++   + PD
Sbjct: 412 LDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIE--LEPD 460


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 308/521 (59%), Gaps = 6/521 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           K+FD+M  RN+VTW  +I+    + C  +    F  M L     D  T++S+L AC +  
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 245

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNV 233
            + +G++LHS ++++G  L+  V  +LVD+Y KC   G V+D+R+VF+++   +++ W  
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 234 MVSCYALNCLGDG-AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++ Y  +   D  AI +F  M    ++ ++F+FSS++ +CG L     G Q++   +K 
Sbjct: 306 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 365

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                  V  SL+ MYA++G ++DA + FD +  KN+VS+N +V G+ +N    EA  L 
Sbjct: 366 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 425

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++          T AS+LS   S+    +  Q+H   +K G ++   I NALI+ YS+C
Sbjct: 426 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 485

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+I  A Q F  +++ ++++WTS+I  +A HG +  ++E+F KML    +P+ I ++ VL
Sbjct: 486 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 545

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH G++SEG ++FN M  ++ I+P  EHY C+ DLLGR GLLVEA + + SMP+   
Sbjct: 546 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 605

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +      +GAC+VHG+  L + AAE +LE EP  P  Y L+SN++AS   W DV ++RK 
Sbjct: 606 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 665

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K  GCSWIE+   +H F   + SHPQA  +Y  L
Sbjct: 666 MKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQEL 706



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 192/332 (57%), Gaps = 7/332 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M   N   D  T++ LL++C++  + ++G+ +H  +++ G  L+  V + L+ LY KCG 
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 213 VEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            E AR +F+ +   RDLV W+ MVSC+A N +   AI  F  M   G   + + F++++ 
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 272 SCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNV 329
           +C     + +G  I+G V+K  + + DV V   L+DM+ K +G++  A +VFD M  +N+
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+W  M+  F Q G  R+A+ L  DM    + PD  T +S+LS+C  L +    +Q+H+ 
Sbjct: 197 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 256

Query: 390 AIKNGVQAFLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG-L 445
            I+ G+   + +  +L++ Y+KC   GS+  + + F  + E ++++WT+II AY   G  
Sbjct: 257 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 316

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            KE+IE+F KM+S  +RP+  +F  VL AC +
Sbjct: 317 DKEAIELFCKMISGHIRPNHFSFSSVLKACGN 348



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 133/241 (55%), Gaps = 3/241 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A +  +LM  +    D  T+S L+ SC    + +LG+ +H  +++   +LD +V  +L+ 
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 307 MYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +Y+K G+ + A  +F+GM   +++VSW+ MV  F  N    +A+    DML+  F P+E 
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSK-CGSIAGALQCFG 423
             A+++ +C + + +     ++ + +K G ++A + +   LI+ + K  G +  A + F 
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E +LVTWT +I  +A  G ++++I++F  M      PD   +  VLSAC+  GL++ 
Sbjct: 190 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 249

Query: 484 G 484
           G
Sbjct: 250 G 250



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 147/303 (48%), Gaps = 19/303 (6%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK          G+Q++S+ +KLG+ +   + N ++ +Y +    +D  K FD
Sbjct: 336 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 395

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N+V++N ++ G      +   +  F  +    + +   TF SLL        +  
Sbjct: 396 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 455

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H  +LK G+  N  + +AL+ +Y +CG +E A +VF+E+  R+++ W  M++ +A 
Sbjct: 456 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 515

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR-------QIHGLVIKQS 293
           +     A+ +F+ M   G K +  T+ +++++C  +G    G+       + HG+V +  
Sbjct: 516 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 575

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD---GREAV 349
                     +VD+  ++G + +A    + M    + + W T++     +G+   GR A 
Sbjct: 576 H------YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 629

Query: 350 KLL 352
           +++
Sbjct: 630 EMI 632



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 2/183 (1%)

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A   L  M Q +  PD  T + +L SC         + VH   +++G++    + N LI+
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 408 AYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            YSKCG    A   F G   + DLV+W++++  +A + +  ++I  F  ML     P+  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR-VGLLVEAYDLLA 525
            F  V+ ACS+      G   +  ++   ++  D      L D+  +  G L  AY +  
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 526 SMP 528
            MP
Sbjct: 190 KMP 192


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/501 (38%), Positives = 300/501 (59%), Gaps = 3/501 (0%)

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           H  + SLL++C+ +  +  G++LH+    +G   N  +++ LV LY     + +AR +FD
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           ++  ++L LWNV++  YA N   D AI +++ M   G++ D FT   ++ +C  L +   
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           GR IH  VIK  ++ D+ V  +L+DMYAK G + DA RVFD +  ++ V WN+M+  + Q
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG   E++ L R+M      P E TL +++SS   ++     R++H +  ++G Q+   +
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           + ALI+ Y+KCGS+  AL  F  ++E  +V+W +II  YA HGL+  ++++F+KM     
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED- 345

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           RPD I F+ VL+ACS G L+ EG   +NLM+ DY I P  +HYTC+ DLLG  G L EAY
Sbjct: 346 RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAY 405

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           DL+ +M ++P S   GA + +CK+HG++ LA+ A EKL+ELEP    NY +++N+YA   
Sbjct: 406 DLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSG 465

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
            W  V +LR++M D    K   CSWIE+  +++ F++ D SH  +  +YA L  + GLM 
Sbjct: 466 KWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMH 525

Query: 642 ENNVSGHCNVL--DKEMDECT 660
           E   +     +  D E DE T
Sbjct: 526 EAGYAPDTGSVFHDVEEDEKT 546



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 209/408 (51%), Gaps = 7/408 (1%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  Y+  L+       L  GKQLH+    LG+     L  +++H+Y    +  +   L
Sbjct: 45  TTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNL 104

Query: 121 FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD++  +N+  WN LI G    G   N    + +ML   +R D+ T   +L+AC     I
Sbjct: 105 FDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAI 164

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             GR +H +++K G+  + FV +AL+D+Y KCG V DA RVFD+++ RD VLWN M++ Y
Sbjct: 165 GEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAY 224

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N   D +I++   M   G++    T  ++++S   +     GR+IHG   +  F  + 
Sbjct: 225 AQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSND 284

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V T+L+DMYAK G++  A  +F+ +  K VVSWN ++ G+  +G    A+ L  D ++ 
Sbjct: 285 KVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLF-DKMRK 343

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAG 417
              PD +T   +L++C    +  E R ++   +++ G+   +     +I+    CG +  
Sbjct: 344 EDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDE 403

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           A     ++  +PD   W +++ +   HG  + +    EK++   + PD
Sbjct: 404 AYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIE--LEPD 449


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 340/598 (56%), Gaps = 8/598 (1%)

Query: 66   YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
            Y+  L   A    L+ G+QLHS I+K      L ++N ++ +Y KC A ++  + F+ +R
Sbjct: 453  YTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIR 512

Query: 126  VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             R+ V+WN +I G +        +  FRRM+LD +  D ++  S+L  C     +E G +
Sbjct: 513  NRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQ 572

Query: 184  LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            +H F++K G     +  S+L+D+Y KCG +E AR VF  +  R +V  N +++ YA N L
Sbjct: 573  VHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL 632

Query: 244  GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDLDVLVA 301
             + AI +F  M+ EG+     TF+SL+++C       LGRQIH L+ K+   +D D L  
Sbjct: 633  VE-AIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFL-G 690

Query: 302  TSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             SL+ MY  +    DA  +F      K+ + W  ++ G  QNG   EA++L ++M + + 
Sbjct: 691  VSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNA 750

Query: 361  CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             PD+ T AS+L +C  L+   + R +H+     G+ +     +A+++ Y+KCG +  ++Q
Sbjct: 751  RPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQ 810

Query: 421  CFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +  + D+++W S+I  +A +G ++ ++++F++M    +RPD + FL VL+ACSH G
Sbjct: 811  VFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAG 870

Query: 480  LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
             VSEG   F++M+  Y I+P  +H  C+ DLLGR G L EA + +  +  EP +      
Sbjct: 871  RVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATL 930

Query: 540  IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
            +GAC++HG     + AAEKL+ELEP     Y L+SN+YA+   W +V  +R+ MR+    
Sbjct: 931  LGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLR 990

Query: 600  KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
            K+PGCSWI +  + + FV+ D+ HP A  ++A+L  +  LM+E+      + L ++ D
Sbjct: 991  KLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYIAETDSLLEDED 1048



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 226/404 (55%), Gaps = 3/404 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G  ++  ++   + KLGL         V+   V     DD   LF +M   N+V WN 
Sbjct: 260 QVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNV 319

Query: 135 LISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG +  G ++    +F+ M    V+    T  S+L A    + +  G  +H+  +K G
Sbjct: 320 MISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQG 379

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N +V S+L+++Y KC  +E A++VFD +  R+LVLWN M+  YA N      + +F+
Sbjct: 380 LNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFS 439

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR  G   D FT++S++++C  L   ++GRQ+H  +IK +F+ ++ V  +LVDMYAK G
Sbjct: 440 EMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCG 499

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            +++A + F+ +  ++ VSWN ++VG+ Q  D  EA  + R M+     PDEV+LASILS
Sbjct: 500 ALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILS 559

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
            C +L    +  QVH + +K+G+Q  L   ++LI+ Y KCG+I  A   F  +    +V+
Sbjct: 560 GCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVS 619

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             +II  YA + L  E+I++F++M +  + P  I F  +L AC+
Sbjct: 620 MNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACT 662



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 241/475 (50%), Gaps = 14/475 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S  S     L   A    L  G  +H+  +K GL + + + + ++++Y KC+  +  +K+
Sbjct: 347 STRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKV 406

Query: 121 FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD +  RN+V WN ++ G    G    V   F  M       D  T+ S+L AC   + +
Sbjct: 407 FDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECL 466

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           E+GR+LHSFI+K  F  N FV + LVD+Y KCG +E+AR+ F+ +  RD V WN ++  Y
Sbjct: 467 EMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGY 526

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                 D A  +F  M L+G+  D  + +S+++ C  L + + G Q+H  ++K      +
Sbjct: 527 VQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCL 586

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
              +SL+DMY K G I+ A  VF  M +++VVS N ++ G+ QN D  EA+ L ++M   
Sbjct: 587 YAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNE 645

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV---QAFLSIENALINAYSKCGSI 415
              P E+T AS+L +C         RQ+H    K G+     FL +  +L+  Y      
Sbjct: 646 GLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGV--SLLVMYMNSQRK 703

Query: 416 AGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
             A   F   + P   + WT+II  +  +G S+E+++++++M  +  RPD   F  VL A
Sbjct: 704 TDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRA 763

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVGLLVEAYDLLASM 527
           CS    + +G    +L+   +H+  DS+  T   + D+  + G +  +  +   M
Sbjct: 764 CSILASLGDGRMIHSLI---FHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEM 815



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 223/470 (47%), Gaps = 68/470 (14%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K +H+  +K G  +K  L + ++ +Y KC   +   K F+++  R+I+ WN+++S     
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 143 GG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G    V   F  +    V  +  T+  +L +C +  DI++G+++H  ++K+GF  N F  
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 201 -------------------------------SALVDLYGKCGFVEDARRVFDEV------ 223
                                          +A++  Y + G  E+A +VF+++      
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV 280

Query: 224 ---------------LCR--------------DLVLWNVMVSCYALNCLGDGAIAVFNLM 254
                          L R              ++V WNVM+S +        AI  F  M
Sbjct: 281 PDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNM 340

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+K    T  S++++  +L +   G  +H   IKQ  + +V V +SL++MYAK   +
Sbjct: 341 WKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKM 400

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A +VFD +  +N+V WN M+ G+ QNG   + +KL  +M    F PDE T  SILS+C
Sbjct: 401 EAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSAC 460

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L      RQ+H++ IK+  +  L +EN L++ Y+KCG++  A Q F  ++  D V+W 
Sbjct: 461 ACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWN 520

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +II  Y       E+  +F +M+   + PD ++   +LS C++   + +G
Sbjct: 521 AIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQG 570



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 158/347 (45%), Gaps = 53/347 (15%)

Query: 157 NVRLDHITFNSLLRACVQ------------------ADDIEVGRRLHSFILKVGFGLNCF 198
           N   +H  F  LL+ C+Q                  A      + +H+  LK GFG    
Sbjct: 58  NQTSEHKIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKGR 117

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           + SA+VDLY KCG VE A + F+++  RD++ WN ++S Y+     +  I  F  ++  G
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG 177

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  + FT++ +++SC  L    LG+Q+H  VIK  F+ +     SL+DMY+K G++ DA 
Sbjct: 178 VSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDAR 237

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD +   + VSW  M+ G+ Q G   EA+K+  DM +    PD+V   +++++C  L 
Sbjct: 238 KIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL- 296

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                                             G +  A   F  +   ++V W  +I 
Sbjct: 297 ----------------------------------GRLDDACDLFVQMPNTNVVAWNVMIS 322

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            +   G   E+I+ F+ M    V+        VLSA +    ++ GL
Sbjct: 323 GHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGL 369



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 156/320 (48%), Gaps = 20/320 (6%)

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           +S+  + IH   +K  F     + +++VD+YAK GN++ A + F+ +  +++++WN+++ 
Sbjct: 96  ASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLS 155

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            + + G   + +     +      P++ T A +LSSC  L      +QVH   IK G + 
Sbjct: 156 MYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEF 215

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
               E +LI+ YSKCGS+  A + F +V +PD V+WT++I  Y   GL +E+++VFE M 
Sbjct: 216 NSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQ 275

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV--G 515
              + PD +AF+ V++AC   G + +    F  M       P++        + G V  G
Sbjct: 276 KLGLVPDQVAFVTVITACVGLGRLDDACDLFVQM-------PNTNVVAWNVMISGHVKRG 328

Query: 516 LLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572
             +EA D   +M    ++    TLG+ + A        +A   A     L  ++ +   L
Sbjct: 329 CDIEAIDFFKNMWKTGVKSTRSTLGSVLSA--------IASLEALNYGLLVHAQAIKQGL 380

Query: 573 VSNVYASERCWFDVARLRKM 592
            SNVY         A+  KM
Sbjct: 381 NSNVYVGSSLINMYAKCEKM 400


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 315/578 (54%), Gaps = 2/578 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A +  A    L  G+QLH+H +K    +   +   ++ VY K  +  D  + F  + 
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              + T N ++ G++  G  +     F+ M+  ++R D ++ + +  AC +      G++
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K GF ++  V++A++DLYGKC  + +A  +F  +  +D V WN +++    N  
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D  I  FN M   GMK D FT+ S++ +C  L S + G  +H  VIK     D  VA++
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 492

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +VDMY K G ID+A ++ D +  + VVSWN ++ GF  N +  EA K   +ML     PD
Sbjct: 493 VVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 552

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T A++L +C +L+     +Q+H   IK  +     I + L++ Y+KCG +  +L  F 
Sbjct: 553 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 612

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            V++ D V+W ++I  YA HGL  E++ +FE+M    V P+   F+ VL ACSH GL  +
Sbjct: 613 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDD 672

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G RYF+LM + Y + P  EH+ C+ D+LGR     EA   + SMP +  +      +  C
Sbjct: 673 GCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSIC 732

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+   + +A+ AA  +L L+P     Y L+SNVYA    W DV+R R++++     K PG
Sbjct: 733 KIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPG 792

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           CSWIE+  E+H F+  D++HP++  +Y ML  + G M+
Sbjct: 793 CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 830



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 211/424 (49%), Gaps = 3/424 (0%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  Y           LFD M   ++V+WN L+SG    G        F  M    V 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D  TF  LL++C   +++ +G ++H+  +K G  ++    SALVD+YGKC  ++DA   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  +  R+ V W   ++    N      + +F  M+  G+     +++S   SC  +   
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             GRQ+H   IK  F  D +V T++VD+YAK  ++ DA R F G+    V + N M+VG 
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G G EA+ L + M++ S   D V+L+ + S+C       + +QVH  AIK+G    +
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + NA+++ Y KC ++  A   F  +K+ D V+W +II A   +G   ++I  F +ML  
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD   +  VL AC+    +  GL   + +I    +  D+   + + D+  + G++ E
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS-GLGSDAFVASTVVDMYCKCGIIDE 505

Query: 520 AYDL 523
           A  L
Sbjct: 506 AQKL 509



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 228/481 (47%), Gaps = 6/481 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +    L  G Q+H+  +K GL   +   + ++ +Y KC++ DD    F  M  RN 
Sbjct: 156 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 215

Query: 130 VTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W   I+G +     V     F  M    + +   ++ S  R+C     +  GR+LH+ 
Sbjct: 216 VSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAH 275

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K  F  +  V +A+VD+Y K   + DARR F  +    +   N M+       LG  A
Sbjct: 276 AIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEA 335

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M    ++ D  + S + ++C        G+Q+H L IK  FD+D+ V  +++D+
Sbjct: 336 MGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDL 395

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K   + +A  +F GM  K+ VSWN ++    QNG   + +    +ML+    PD+ T 
Sbjct: 396 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 455

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S+L +C +L        VH   IK+G+ +   + + +++ Y KCG I  A +    +  
Sbjct: 456 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGG 515

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             +V+W +I+  ++ +  S+E+ + F +ML   ++PD   F  VL  C++   +  G + 
Sbjct: 516 QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQI 575

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVH 546
              +I    +L D    + L D+  + G + ++  LL    +E R   +  A I    +H
Sbjct: 576 HGQIIKQ-EMLDDEYISSTLVDMYAKCGDMPDS--LLVFEKVEKRDFVSWNAMICGYALH 632

Query: 547 G 547
           G
Sbjct: 633 G 633



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 200/422 (47%), Gaps = 41/422 (9%)

Query: 162 HITFNSLLRACVQA--DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            +TF+ + ++C QA  + +  GR  H+ ++  GF  N FVS+ L+ +Y +C     ARRV
Sbjct: 15  RVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACARRV 74

Query: 220 FDEVLCRDLVLWNVMVSCYA----------------------LNCLGDG---------AI 248
           FD +  RD V WN M++ Y+                       N L  G         ++
Sbjct: 75  FDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESV 134

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M   G+  D  TF+ L+ SC  L    LG Q+H L +K   ++DV   ++LVDMY
Sbjct: 135 DLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMY 194

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K  ++DDA   F GM  +N VSW   + G  QN      ++L  +M +      + + A
Sbjct: 195 GKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYA 254

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S   SC ++S     RQ+HA+AIKN   +   +  A+++ Y+K  S+  A + F  +   
Sbjct: 255 SAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNH 314

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
            + T  +++      GL  E++ +F+ M+  ++R D ++   V SAC+      +G +  
Sbjct: 315 TVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVH 374

Query: 489 NLMIS---DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            L I    D  I  ++     + DL G+   L+EAY +   M  +  S +  A I A + 
Sbjct: 375 CLAIKSGFDVDICVNN----AVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQ 429

Query: 546 HG 547
           +G
Sbjct: 430 NG 431



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 25/228 (10%)

Query: 34  ITNAQK-HDR----SVLSSQLRNSG-TIHESTHSAHSFYSQALKVSAK---FGF------ 78
           I  AQK HDR     V+S     SG ++++ +  A  F+S+ L +  K   F F      
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 79  ------LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
                 ++ GKQ+H  I+K  + +   + + ++ +Y KC    D   +F+++  R+ V+W
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 133 NTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHSFIL 189
           N +I G  +   G      F RM  +NV  +H TF ++LRAC      + G R  H    
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS 236
                      + +VD+ G+    ++A +  + +  + D V+W  ++S
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 315/578 (54%), Gaps = 2/578 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A +  A    L  G+QLH+H +K    +   +   ++ VY K  +  D  + F  + 
Sbjct: 295 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 354

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              + T N ++ G++  G  +     F+ M+  ++R D ++ + +  AC +      G++
Sbjct: 355 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 414

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K GF ++  V++A++DLYGKC  + +A  +F  +  +D V WN +++    N  
Sbjct: 415 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 474

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D  I  FN M   GMK D FT+ S++ +C  L S + G  +H  VIK     D  VA++
Sbjct: 475 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 534

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +VDMY K G ID+A ++ D +  + VVSWN ++ GF  N +  EA K   +ML     PD
Sbjct: 535 VVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 594

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T A++L +C +L+     +Q+H   IK  +     I + L++ Y+KCG +  +L  F 
Sbjct: 595 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 654

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            V++ D V+W ++I  YA HGL  E++ +FE+M    V P+   F+ VL ACSH GL  +
Sbjct: 655 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDD 714

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G RYF+LM + Y + P  EH+ C+ D+LGR     EA   + SMP +  +      +  C
Sbjct: 715 GCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSIC 774

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+   + +A+ AA  +L L+P     Y L+SNVYA    W DV+R R++++     K PG
Sbjct: 775 KIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPG 834

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           CSWIE+  E+H F+  D++HP++  +Y ML  + G M+
Sbjct: 835 CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 872



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 211/424 (49%), Gaps = 3/424 (0%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  Y           LFD M   ++V+WN L+SG    G        F  M    V 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D  TF  LL++C   +++ +G ++H+  +K G  ++    SALVD+YGKC  ++DA   
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  +  R+ V W   ++    N      + +F  M+  G+     +++S   SC  +   
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             GRQ+H   IK  F  D +V T++VD+YAK  ++ DA R F G+    V + N M+VG 
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G G EA+ L + M++ S   D V+L+ + S+C       + +QVH  AIK+G    +
Sbjct: 369 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 428

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + NA+++ Y KC ++  A   F  +K+ D V+W +II A   +G   ++I  F +ML  
Sbjct: 429 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 488

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD   +  VL AC+    +  GL   + +I    +  D+   + + D+  + G++ E
Sbjct: 489 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS-GLGSDAFVASTVVDMYCKCGIIDE 547

Query: 520 AYDL 523
           A  L
Sbjct: 548 AQKL 551



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 228/481 (47%), Gaps = 6/481 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +    L  G Q+H+  +K GL   +   + ++ +Y KC++ DD    F  M  RN 
Sbjct: 198 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 257

Query: 130 VTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W   I+G +     V     F  M    + +   ++ S  R+C     +  GR+LH+ 
Sbjct: 258 VSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAH 317

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K  F  +  V +A+VD+Y K   + DARR F  +    +   N M+       LG  A
Sbjct: 318 AIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEA 377

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M    ++ D  + S + ++C        G+Q+H L IK  FD+D+ V  +++D+
Sbjct: 378 MGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDL 437

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K   + +A  +F GM  K+ VSWN ++    QNG   + +    +ML+    PD+ T 
Sbjct: 438 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 497

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S+L +C +L        VH   IK+G+ +   + + +++ Y KCG I  A +    +  
Sbjct: 498 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGG 557

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             +V+W +I+  ++ +  S+E+ + F +ML   ++PD   F  VL  C++   +  G + 
Sbjct: 558 QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQI 617

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVH 546
              +I    +L D    + L D+  + G + ++  LL    +E R   +  A I    +H
Sbjct: 618 HGQIIKQ-EMLDDEYISSTLVDMYAKCGDMPDS--LLVFEKVEKRDFVSWNAMICGYALH 674

Query: 547 G 547
           G
Sbjct: 675 G 675



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + ++  Y   G +  A  +FD +   D+V WN +VS Y    +   ++ +F  M   G+ 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  TF+ L+ SC  L    LG Q+H L +K   ++DV   ++LVDMY K  ++DDA   
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F GM  +N VSW   + G  QN      ++L  +M +      + + AS   SC ++S  
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              RQ+HA+AIKN   +   +  A+++ Y+K  S+  A + F  +    + T  +++   
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS---DYHI 497
              GL  E++ +F+ M+  ++R D ++   V SAC+      +G +   L I    D  I
Sbjct: 369 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 428

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             ++     + DL G+   L+EAY +   M  +  S +  A I A + +G
Sbjct: 429 CVNN----AVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNG 473



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 25/228 (10%)

Query: 34  ITNAQK-HDR----SVLSSQLRNSG-TIHESTHSAHSFYSQALKVSAK---FGF------ 78
           I  AQK HDR     V+S     SG ++++ +  A  F+S+ L +  K   F F      
Sbjct: 545 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 604

Query: 79  ------LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
                 ++ GKQ+H  I+K  + +   + + ++ +Y KC    D   +F+++  R+ V+W
Sbjct: 605 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 664

Query: 133 NTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHSFIL 189
           N +I G  +   G      F RM  +NV  +H TF ++LRAC      + G R  H    
Sbjct: 665 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 724

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS 236
                      + +VD+ G+    ++A +  + +  + D V+W  ++S
Sbjct: 725 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 772


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 315/578 (54%), Gaps = 2/578 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A +  A    L  G+QLH+H +K    +   +   ++ VY K  +  D  + F  + 
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              + T N ++ G++  G  +     F+ M+  ++R D ++ + +  AC +      G++
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K GF ++  V++A++DLYGKC  + +A  +F  +  +D V WN +++    N  
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D  I  FN M   GMK D FT+ S++ +C  L S + G  +H  VIK     D  VA++
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 492

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +VDMY K G ID+A ++ D +  + VVSWN ++ GF  N +  EA K   +ML     PD
Sbjct: 493 VVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 552

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T A++L +C +L+     +Q+H   IK  +     I + L++ Y+KCG +  +L  F 
Sbjct: 553 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 612

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            V++ D V+W ++I  YA HGL  E++ +FE+M    V P+   F+ VL ACSH GL  +
Sbjct: 613 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDD 672

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G RYF+LM + Y + P  EH+ C+ D+LGR     EA   + SMP +  +      +  C
Sbjct: 673 GCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSIC 732

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+   + +A+ AA  +L L+P     Y L+SNVYA    W DV+R R++++     K PG
Sbjct: 733 KIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPG 792

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           CSWIE+  E+H F+  D++HP++  +Y ML  + G M+
Sbjct: 793 CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 830



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 211/424 (49%), Gaps = 3/424 (0%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  Y           LFD M   ++V+WN L+SG    G        F  M    V 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D  TF  LL++C   +++ +G ++H+  +K G  ++    SALVD+YGKC  ++DA   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  +  R+ V W   ++    N      + +F  M+  G+     +++S   SC  +   
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             GRQ+H   IK  F  D +V T++VD+YAK  ++ DA R F G+    V + N M+VG 
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G G EA+ L + M++ S   D V+L+ + S+C       + +QVH  AIK+G    +
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + NA+++ Y KC ++  A   F  +K+ D V+W +II A   +G   ++I  F +ML  
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD   +  VL AC+    +  GL   + +I    +  D+   + + D+  + G++ E
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS-GLGSDAFVASTVVDMYCKCGIIDE 505

Query: 520 AYDL 523
           A  L
Sbjct: 506 AQKL 509



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 228/481 (47%), Gaps = 6/481 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +    L  G Q+H+  +K GL   +   + ++ +Y KC++ DD    F  M  RN 
Sbjct: 156 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 215

Query: 130 VTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W   I+G +     V     F  M    + +   ++ S  R+C     +  GR+LH+ 
Sbjct: 216 VSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAH 275

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K  F  +  V +A+VD+Y K   + DARR F  +    +   N M+       LG  A
Sbjct: 276 AIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEA 335

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M    ++ D  + S + ++C        G+Q+H L IK  FD+D+ V  +++D+
Sbjct: 336 MGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDL 395

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K   + +A  +F GM  K+ VSWN ++    QNG   + +    +ML+    PD+ T 
Sbjct: 396 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 455

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S+L +C +L        VH   IK+G+ +   + + +++ Y KCG I  A +    +  
Sbjct: 456 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGG 515

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             +V+W +I+  ++ +  S+E+ + F +ML   ++PD   F  VL  C++   +  G + 
Sbjct: 516 QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQI 575

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVH 546
              +I    +L D    + L D+  + G + ++  LL    +E R   +  A I    +H
Sbjct: 576 HGQIIKQ-EMLDDEYISSTLVDMYAKCGDMPDS--LLVFEKVEKRDFVSWNAMICGYALH 632

Query: 547 G 547
           G
Sbjct: 633 G 633



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + ++  Y   G +  A  +FD +   D+V WN +VS Y    +   ++ +F  M   G+ 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  TF+ L+ SC  L    LG Q+H L +K   ++DV   ++LVDMY K  ++DDA   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F GM  +N VSW   + G  QN      ++L  +M +      + + AS   SC ++S  
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              RQ+HA+AIKN   +   +  A+++ Y+K  S+  A + F  +    + T  +++   
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS---DYHI 497
              GL  E++ +F+ M+  ++R D ++   V SAC+      +G +   L I    D  I
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             ++     + DL G+   L+EAY +   M  +  S +  A I A + +G
Sbjct: 387 CVNN----AVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNG 431



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 25/228 (10%)

Query: 34  ITNAQK-HDR----SVLSSQLRNSG-TIHESTHSAHSFYSQALKVSAK---FGF------ 78
           I  AQK HDR     V+S     SG ++++ +  A  F+S+ L +  K   F F      
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 79  ------LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
                 ++ GKQ+H  I+K  + +   + + ++ +Y KC    D   +F+++  R+ V+W
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 133 NTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHSFIL 189
           N +I G  +   G      F RM  +NV  +H TF ++LRAC      + G R  H    
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS 236
                      + +VD+ G+    ++A +  + +  + D V+W  ++S
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/593 (34%), Positives = 330/593 (55%), Gaps = 12/593 (2%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           Q+L  S     L+  +Q HS I+ LGL     L  +++  Y  C+       +FD ++ +
Sbjct: 28  QSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHK 87

Query: 128 NIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+  WN+LI+G +           F +M   +V  D  T ++L +   +   +  G+ +H
Sbjct: 88  NVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIH 147

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL--NC- 242
              ++ GF  +  V+++++ +Y KCG  +++R+VFDE+  R+   WNV+++ YA+  NC 
Sbjct: 148 GKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCN 207

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSF----DLD 297
             +        M+++ ++ D +T SSL+  C G +G    GR++H  ++K       D D
Sbjct: 208 FREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSD 267

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-L 356
           V +   L+DMY+++  +    RVFD M  +NV SW  M+ G+ +NGD  EA+ L RDM +
Sbjct: 268 VHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQV 327

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P+ V+L S+L +C S S     RQ+H +A++  +   +S+ NALI+ YSKCGS+ 
Sbjct: 328 IDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLD 387

Query: 417 GALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            A + F       D ++W+S+I  Y  HG  +E+I +++KML   +RPD I  + +LSAC
Sbjct: 388 SARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSAC 447

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
              GLV+EGL  ++ +I+DY I P  E   C+ D+LGR G L  A D + ++P+EP    
Sbjct: 448 GRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSV 507

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
            GA +    +HG + + + A   L++LEP  P NY  +SN+YAS R W  VA +R+MM+D
Sbjct: 508 WGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKD 567

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
               KVPGCSWI I  + H F  +D++HP +  +Y ML  +   M +   S H
Sbjct: 568 KRLRKVPGCSWISINNKTHCFYVADKAHPSSTSIYNMLDDLLLTMNDAICSPH 620


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/608 (34%), Positives = 335/608 (55%), Gaps = 54/608 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H+H +K G      ++ ++L +Y +    DD   +F +M  RN+ +W  ++S 
Sbjct: 75  LNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSV 134

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK------ 190
            ++ G        F ++ LD++ L+   F  +L+ C     +E+GR+LH  ++K      
Sbjct: 135 HVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMG 194

Query: 191 ------VGFGLNCFVS-SALVDLYGKCGFVEDARRVFD--EVLCRDLVLWNVMVSCYALN 241
                  GF +   VS + ++  Y + G VE A+ +FD  E++ +D + WN M+S YA N
Sbjct: 195 SALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADN 254

Query: 242 CLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
            L D A+++F +L+  EG++ D FT  S++ +C  + S + G+++H   + +    +  V
Sbjct: 255 LLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFV 314

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG--------QN------GDGR 346
             +LV+MY+K  ++  A   FDG+T ++  +WN ++ G+         QN      GDG 
Sbjct: 315 GGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGF 374

Query: 347 E---------------------AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           E                     A++L  +M   S  PD  T+  IL +C  L+     +Q
Sbjct: 375 EPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQ 434

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           VHA++I+ G +  + I  AL++ Y+KCGSI  A+Q +  +  P+LV+  +++ AYA HG 
Sbjct: 435 VHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGH 494

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
             E I +F  ML +  RPD + FL VLS+C H G V  G  +F+LM + Y++ P  +HYT
Sbjct: 495 GDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLM-TYYNVTPSLKHYT 553

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
           C+ DLL R G L EAY+L+  +P +P S   GA +G C + G++ L + AAE L+ELEP+
Sbjct: 554 CIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPN 613

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              NY L++N+YA    W D+ R R+M++D   HK PGCSWIE   +IH F+S D+SH +
Sbjct: 614 NTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEK 673

Query: 626 AVHMYAML 633
              +Y  L
Sbjct: 674 TEDIYTTL 681



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 213/469 (45%), Gaps = 98/469 (20%)

Query: 58  STHSAHSFYSQALKVSAKFGF----------------------LQQGKQLHSHIMK---- 91
           S H  H ++ +AL +  K                         L+ G+QLH  ++K    
Sbjct: 133 SVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCAD 192

Query: 92  ----LGLCNKLSLQNQVLHV-----YVKCKAFDDMEKLFDEMRV--RNIVTWNTLISGII 140
               L + +  S++N V +      Y +    +  ++LFD+M +  ++ ++WN++ISG  
Sbjct: 193 MGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYA 252

Query: 141 N--CGGNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
           +          FR +L++  +  D  T  S+L AC     +  G+ +H+  +  G   N 
Sbjct: 253 DNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNT 312

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA------------LNCLGD 245
           FV  ALV++Y KC  ++ A+  FD V  RD   WNV++S YA                GD
Sbjct: 313 FVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGD 372

Query: 246 G-----------------------AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           G                       A+ +F  M+   ++ D +T   ++ +C  L +   G
Sbjct: 373 GFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARG 432

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           +Q+H   I+Q ++LDV +  +LVDMYAK G+I  A +V++ ++  N+VS N M+  +  +
Sbjct: 433 KQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMH 492

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF---- 398
           G G E + L R+ML   F PD VT  S+LSSC           VHA A++ G + F    
Sbjct: 493 GHGDEGIALFRNMLGNGFRPDHVTFLSVLSSC-----------VHAGAVETGHEFFDLMT 541

Query: 399 -------LSIENALINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGA 439
                  L     +++  S+ G +  A +    + ++PD V W +++G 
Sbjct: 542 YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGG 590



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 183/354 (51%), Gaps = 20/354 (5%)

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           LLD  ++D  T+ SLL +C     + +G+++H+  LK GF  + FV + L+ +YG+ G +
Sbjct: 55  LLDK-QIDSSTYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCL 110

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           +DA  VF ++  R+L  W  ++S +  +   + A+++F  ++L+ +  ++F F  ++  C
Sbjct: 111 DDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLC 170

Query: 274 GTLGSSKLGRQIHGLVIKQSFDL-------------DVLVATSLVDMYAKNGNIDDACRV 320
           G L   +LGRQ+HG+VIK+  D+             +V+   +++  Y +NGN++ A  +
Sbjct: 171 GGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKEL 230

Query: 321 FDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSL 377
           FD M    K+ +SWN+M+ G+  N    EA+ + RD+L +     D  TL S+L++C  +
Sbjct: 231 FDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADM 290

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           +     ++VHA A+  G+     +  AL+  YSKC  +  A   F  V E D  TW  +I
Sbjct: 291 ASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLI 350

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
             YA     +    + +KM      P+   +  ++S     G     LR F  M
Sbjct: 351 SGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEM 404



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 164/358 (45%), Gaps = 42/358 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A    L++GK++H+  +  GL     +   ++ +Y KC+     +  FD +  R+ 
Sbjct: 284 LAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDT 343

Query: 130 VTWNTLISGIINC--------------GGNVTP-----------------------YFRR 152
            TWN LISG   C              G    P                        F  
Sbjct: 344 ATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTE 403

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M   ++R D  T   +L AC +   I  G+++H+  ++ G+ L+  + +ALVD+Y KCG 
Sbjct: 404 MQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGS 463

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++ A +V++ +   +LV  N M++ YA++  GD  IA+F  M   G + D+ TF S+++S
Sbjct: 464 IKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSS 523

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVS 331
           C   G+ + G +   L+   +    +   T +VD+ ++ G +D+A  +   +  K + V 
Sbjct: 524 CVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVM 583

Query: 332 WNTMVVG---FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           W  ++ G   +G    G  A + L + L+ +   + V LA++ +  G       TRQ+
Sbjct: 584 WGALLGGCVIWGNVELGEIAAESLIE-LEPNNTGNYVLLANLYAYAGRWHDLDRTRQM 640


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 312/554 (56%), Gaps = 5/554 (0%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD-MEKLFDEMRVRNIVTWNTLISGIINC 142
           QLH H +K      + +    L +Y+KC    D   +LF+ +   N+ ++N +I G    
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291

Query: 143 --GGNVTPYFRRMLLDNVRLDHITFNSLLRAC-VQADDIEVGRRLHSFILKVGFGLNCFV 199
             G      FR +    + LD ++ +   RAC V   D+E G ++H   +K     N  V
Sbjct: 292 DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE-GLQVHGLSMKSLCQSNICV 350

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++A++D+YGKCG + +A  VF+E++ RD V WN +++ +  N   +  +++F  M   GM
Sbjct: 351 ANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGM 410

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D FT+ S++ +C    +   G +IH  +IK    LD  V  +L+DMY+K G ++ A +
Sbjct: 411 EPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEK 470

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           + D +  + VVSWN ++ GF       EA K    ML+    PD  T A+IL +C +L  
Sbjct: 471 LHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVT 530

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +Q+HA  IK  +Q+   I + L++ YSKCG++      F      D VTW +++  
Sbjct: 531 VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCG 590

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HGL +E++++FE M    V+P+   FL VL AC H GLV +GL YF+ M+S+Y + P
Sbjct: 591 YAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDP 650

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY+C+ D++GR G + +A +L+  MP E  +      +  CK+HG++ +A+ AA  +
Sbjct: 651 QLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSI 710

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+LEP     Y L+SN+YA+   W +V +LRKMMR N   K PGCSWIEI  E+H F+  
Sbjct: 711 LQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVG 770

Query: 620 DRSHPQAVHMYAML 633
           D++HP++  +Y  L
Sbjct: 771 DKAHPRSKEIYENL 784



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 219/418 (52%), Gaps = 11/418 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G Q+H   MK    + + + N +L +Y KC A  +   +F+EM  R+ V+WN +I+   
Sbjct: 331 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 390

Query: 141 NCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        F  ML   +  D  T+ S+L+AC     +  G  +H+ I+K   GL+ F
Sbjct: 391 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSF 450

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V  AL+D+Y KCG +E A ++ D +  + +V WN ++S ++L    + A   F+ M   G
Sbjct: 451 VGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 510

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D FT+++++++C  L + +LG+QIH  +IK+    D  ++++LVDMY+K GN+ D  
Sbjct: 511 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQ 570

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+    ++ V+WN MV G+ Q+G G EA+K+   M   +  P+  T  ++L +CG + 
Sbjct: 571 LIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 630

Query: 379 -ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSI 436
            +       H+     G+   L   + +++   + G ++ AL+   G   E D V W ++
Sbjct: 631 LVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTL 690

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVR---PDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +     HG    ++EV EK     ++    DS A++ + +  ++ G+ +E  +   +M
Sbjct: 691 LSXCKIHG----NVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMM 744



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/588 (25%), Positives = 258/588 (43%), Gaps = 84/588 (14%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           +++T +    +S   +  +    L  GKQ H+ ++       + + N ++ +Y+KC    
Sbjct: 35  YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLG 94

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCG-----------------GNVTPYFRRMLLDNV 158
              K+FD M  R+ V+WN ++ G    G                 G V  +  RM     
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGT 154

Query: 159 RLDHITFNSLLRAC---------------------------------------VQADDIE 179
             D  TF  +L++C                                       VQ DD+ 
Sbjct: 155 VFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLR 214

Query: 180 VG--------------RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED-ARRVFDEVL 224
            G               +LH   LK  FG +  + +A +D+Y KC  + D + ++F+ + 
Sbjct: 215 GGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLP 274

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
             +L  +N ++  YA +  G  A+ +F L++  G+  D  + S    +C  +     G Q
Sbjct: 275 NHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQ 334

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +HGL +K     ++ VA +++DMY K G + +AC VF+ M +++ VSWN ++    QNG+
Sbjct: 335 VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGN 394

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSC-GSLSISCETRQVHAYAIKN--GVQAFLSI 401
             + + L   MLQ    PDE T  S+L +C G  +++C   ++H   IK+  G+ +F+ I
Sbjct: 395 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNC-GMEIHNRIIKSRMGLDSFVGI 453

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
             ALI+ YSKCG +  A +    + E  +V+W +II  ++    S+E+ + F KML   V
Sbjct: 454 --ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV 511

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD+  +  +L  C++   V  G +  +  I    +  D+   + L D+  + G +    
Sbjct: 512 DPDNFTYATILDTCANLVTVELG-KQIHAQIIKKELQSDAYISSTLVDMYSKCGNM---Q 567

Query: 522 DLLASMPIEPRSD--TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
           D        P  D  T  A +     HG +G       + ++LE  KP
Sbjct: 568 DFQLIFEKAPNRDFVTWNAMVCGYAQHG-LGEEALKIFEYMQLENVKP 614



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 5/197 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   A    ++ GKQ+H+ I+K  L +   + + ++ +Y KC    D + +F++  
Sbjct: 518 YATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 577

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
            R+ VTWN ++ G      G      F  M L+NV+ +H TF ++LRAC     +E G  
Sbjct: 578 NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 637

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYAL 240
             HS +   G        S +VD+ G+ G V  A  + + +    D V+W  ++S C   
Sbjct: 638 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIH 697

Query: 241 NCLGDGAIAVFNLMRLE 257
             +     A +++++LE
Sbjct: 698 GNVEVAEKAAYSILQLE 714


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/586 (33%), Positives = 328/586 (55%), Gaps = 11/586 (1%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +H   H  + F ++  LK+       +    LH+ I KLG  +   +   ++  Y  C +
Sbjct: 32  VHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGS 91

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY------FRRMLLDNVRLDHITFNS 167
            +   + FD +  +++V+W    +G++ C      +      F  M +     +H TF  
Sbjct: 92  VNSARQAFDAIACKDMVSW----TGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAG 147

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           +L+AC+  +   VG+ +H  +LK  + ++ +V   L+DLY K G   D  RVF+E+   D
Sbjct: 148 VLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHD 207

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           ++ W+ M+S YA +     A+ +F  MR   +  + FTF+S++ SC ++ + +LG+Q+H 
Sbjct: 208 VIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHC 267

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            V+K   D +V V+ +L+D+YAK G +D++ ++F  +  +N V+WNTM+VG+ Q+GDG +
Sbjct: 268 HVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDK 327

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+ L ++ML+      EVT +S+L +C SL+      Q+H+ ++K      + + NALI+
Sbjct: 328 ALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALID 387

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y+KCGSI  A   F  + E D ++W ++I  Y+ HGL  E+++ F+ M      P+ + 
Sbjct: 388 MYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLT 447

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           F+ +LSACS+ GL+  G  YF  M+ DY I P  EHYTC+  LLGR G L +A  L+  +
Sbjct: 448 FVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEI 507

Query: 528 PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587
           P+EP      A +GAC +H  + L   +A+++L+++P     + L+SN+YA  R W  VA
Sbjct: 508 PLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVA 567

Query: 588 RLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            +RK M++    K PG SWIE  G +H F   D SHP    +  ML
Sbjct: 568 SVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGML 613



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 238/455 (52%), Gaps = 6/455 (1%)

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN V++ TLI G +       V   F R+  +   L+   F ++L+  V  +  E+ 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             LH+ I K+G   N FV +AL+D Y  CG V  AR+ FD + C+D+V W  MV+CYA N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                ++ +F  MR+ G   ++FTF+ ++ +C  L +  +G+ +HG V+K  +++D+ V 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
             L+D+Y K G+ +D  RVF+ M   +V+ W+ M+  + Q+   REAV+L   M +    
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P++ T AS+L SC S+      +QVH + +K G+   + + NAL++ Y+KCG +  +++ 
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   + VTW ++I  Y   G   +++ +++ ML   V+   + +  VL AC+    +
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
             G +  +L +   +   D      L D+  + G +  A  L+  M  E    +  A I 
Sbjct: 361 ELGTQIHSLSLKTIYD-KDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMIS 418

Query: 542 ACKVHGSIGLAKWAAEKLLELE--PSKPVNYALVS 574
              +HG +G A  A + + E E  P+K    +++S
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILS 453


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/676 (32%), Positives = 349/676 (51%), Gaps = 99/676 (14%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           ++  F++  L+ S +      G+ +H  I+K GL   + L N ++  Y K  +      +
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHV 67

Query: 121 FDEMRVRNIVTWNTLISGIINCGG---------------------------------NVT 147
           FDEM +++  +WNTLISG    G                                  N  
Sbjct: 68  FDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAI 127

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
             F +M+ + V     T +++L +C     +++GR++HSF++K+G G    V+++L+++Y
Sbjct: 128 WMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMY 187

Query: 208 GKCGFVEDARRVFDEVLC-------------------------------RDLVLWNVMVS 236
            KCG    A+ VFD +                                 RD+V WN M+S
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 237 CYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK---- 291
            Y+       A+A+F+ M  E  +K D FT +S++++C  L    +G+QIH  +++    
Sbjct: 248 GYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 292 -----------------------------QSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
                                        ++ +L+++  TSL+D Y K GN+  A  +F+
Sbjct: 308 TSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +  ++VV+W  M+VG+ QNG   +A++L R M+     P+  TLA++LS   SL+I   
Sbjct: 368 KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYA 441
            +Q+HA AIK G  +  S+ NALI  Y+K G+I  A + F     + ++V+WTS+I A A
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HGL KE+I +FE+MLS  ++PD I ++ VLSAC+H GLV +G +Y+N+M   + I P  
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
            HY C+ DL GR GLL EAY  + SMPIEP +   G+ + +CK+H +  LAK AAE+LL 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           ++P     Y  ++NVY++   W + A+ RK+M+D    K  G SWI I  E+H F   D 
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 622 SHPQAVHMYAMLCTVF 637
            HPQ   +Y ++  ++
Sbjct: 668 IHPQKDEIYKLMAEIW 683


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 317/565 (56%), Gaps = 8/565 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ-NQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L+V A+   L  G++LH+ ++K G   + ++Q N +L +Y +C   D   ++F E+  ++
Sbjct: 272 LQVCAELAQLNHGRELHAALLKCG--TEFNIQCNALLVMYARCGWVDSALRVFREIGDKD 329

Query: 129 IVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            ++WN+++S  +          +F  M+ +    DH    SLL A      +  GR +H+
Sbjct: 330 YISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHA 389

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           + +K     +  +++ L+D+Y KC  VE + RVFD +  +D V W  +++CYA +     
Sbjct: 390 YAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSE 449

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI  F   + EG+K D     S++ +C  L S  L +Q+H   I+    LD+++   ++D
Sbjct: 450 AIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIID 508

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y + G +  A  +F+ +  K++V+W +MV  F +NG   EAV L   ML     PD V 
Sbjct: 509 IYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVA 568

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L  IL +   LS   + +++H + I+       ++ ++L++ YS CGS+  AL+ F   K
Sbjct: 569 LVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAK 628

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V WT++I A   HG  K++I +F++ML   V PD ++FL +L ACSH  LV EG  
Sbjct: 629 CKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKF 688

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           Y ++M+S Y + P  EHY C+ DLLGR G   EAY  + SMP+EP+S    A +GAC++H
Sbjct: 689 YLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIH 748

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            +  LA  A +KLLELEP  P NY LVSNV+A    W +V  +R  M +    K P CSW
Sbjct: 749 KNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSW 808

Query: 607 IEIAGEIHTFVSSDRSH--PQAVHM 629
           IEI   +HTF + D SH   QA+H+
Sbjct: 809 IEIGNTVHTFTARDHSHRDSQAIHL 833



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 210/421 (49%), Gaps = 11/421 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMK---LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           Y   L + A    + +G+QLH+H +    LG  +   L  ++L +Y KC    D  +LFD
Sbjct: 58  YGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFD 117

Query: 123 EMRVRNIVTWNTLISGIINCGG--NVTPYFRRML----LDNVRLDHITFNSLLRACVQAD 176
            M  R + +WN LI   ++ GG       +R M     +     D  T  S+L+AC    
Sbjct: 118 GMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG 177

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMV 235
           D   G  +H   +K G   +  V++ALV +Y KCG ++ A RVF+ +   RD+  WN  +
Sbjct: 178 DGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAI 237

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S    N +   A+ +F  M+ +G   + +T   ++  C  L     GR++H  ++K   +
Sbjct: 238 SGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE 297

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            ++     LV MYA+ G +D A RVF  +  K+ +SWN+M+  + QN    EA+    +M
Sbjct: 298 FNIQCNALLV-MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEM 356

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +Q  F PD   + S+LS+ G L      R+VHAYA+K  + + L I N L++ Y KC S+
Sbjct: 357 VQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSV 416

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             + + F  ++  D V+WT+II  YA      E+I  F       ++ D +    +L AC
Sbjct: 417 ECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC 476

Query: 476 S 476
           S
Sbjct: 477 S 477



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 214/411 (52%), Gaps = 15/411 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H+     L      G L  G+++H++ +K  L + L + N ++ +Y+KC + +   ++FD
Sbjct: 365 HACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFD 424

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY------FRRMLLDNVRLDHITFNSLLRACVQAD 176
            MR+++ V+W T    II C    + Y      FR    + +++D +   S+L AC    
Sbjct: 425 RMRIKDHVSWTT----IIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLK 480

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            I + +++HS+ ++ G  L+  + + ++D+YG+CG V  A  +F+ +  +D+V W  MV+
Sbjct: 481 SISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVN 539

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           C+A N L   A+A+F  M   G++ D      ++ +   L S   G++IHG +I+  F +
Sbjct: 540 CFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPV 599

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  V +SLVDMY+  G+++ A +VFD    K+VV W  M+   G +G G++A+ + + ML
Sbjct: 600 EGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRML 659

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETR-QVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +    PD V+  ++L +C    +  E +  +     K  +Q +      +++   + G  
Sbjct: 660 ETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQT 719

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
             A +   S+  EP  V W +++GA   H   + ++   +K+L   + PD+
Sbjct: 720 EEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLE--LEPDN 768



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 17/319 (5%)

Query: 178 IEVGRRLHSFILKVG-FGLN--CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           +  GR+LH+  +  G  G +   F+++ L+ +YGKCG + DA R+FD +  R +  WN +
Sbjct: 71  VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNAL 130

Query: 235 VSCYALNCLGDG----AIAVFNLMR----LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           +      CL  G    A+ V+  MR    + G   D  T +S++ +CG  G  + G ++H
Sbjct: 131 IGA----CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVH 186

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDG 345
           GL +K   D   LVA +LV MYAK G +D A RVF+ M   ++V SWN+ + G  QNG  
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMF 246

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+ L R M    F  +  T   +L  C  L+     R++HA  +K G +  +   NAL
Sbjct: 247 LEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NAL 305

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +  Y++CG +  AL+ F  + + D ++W S++  Y  + L  E+I+ F +M+ +   PD 
Sbjct: 306 LVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDH 365

Query: 466 IAFLEVLSACSHGGLVSEG 484
              + +LSA  H G +  G
Sbjct: 366 ACIVSLLSAVGHLGRLING 384


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 317/565 (56%), Gaps = 5/565 (0%)

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTP 148
           + GLC+   L N +L         +    LF +++  NI  WNT+I G++  +C  +   
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           ++  M  +    ++ TF  +L+AC +  D+++G ++H+ ++K GF  + FV ++LV LY 
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KCG++EDA +VFD++  +++V W  ++S Y        AI +F  +    +  D FT   
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVR 218

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++++C  LG    G  IH  +++     +V V TSLVDMYAK GN++ A  VFDGM  K+
Sbjct: 219 VLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKD 278

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           +VSW  M+ G+  NG  +EA+ L   M + +  PD  T+  +LS+C  L        V  
Sbjct: 279 IVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSG 338

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
              +N       +  ALI+ Y+KCGS++ A + F  +KE D V W +II   A +G  K 
Sbjct: 339 LVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKI 398

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
           S  +F ++    ++PD   F+ +L  C+H GLV EG RYFN M   + + P  EHY C+ 
Sbjct: 399 SFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMV 458

Query: 509 DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568
           DLLGR GLL EA+ L+ +MP+E  +   GA +GAC++H    LA+ A ++L+ELEP    
Sbjct: 459 DLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSG 518

Query: 569 NYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVH 628
           NY L+SN+Y++   W + A++R  M +    K PGCSWIE+ G +H F+  D+ HP +  
Sbjct: 519 NYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEK 578

Query: 629 MYAMLCTVFGLMEENNVSGHCNVLD 653
           +YA L     L ++  V+G+    D
Sbjct: 579 IYAKLDE---LTKKMKVAGYVPTTD 600



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 202/387 (52%), Gaps = 14/387 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A+   LQ G ++H+ ++K G    + ++  ++ +Y KC   +D  K+FD++ 
Sbjct: 115 FPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIP 174

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N+V+W  +ISG I  G        FRR+L  N+  D  T   +L AC Q  D+  G  
Sbjct: 175 DKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEW 234

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  I+++G   N FV ++LVD+Y KCG +E AR VFD +  +D+V W  M+  YALN L
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGL 294

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI +F  M+ E +K D +T   ++++C  LG+ +LG  + GLV +  F  + ++ T+
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTA 354

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+YAK G++  A  VF GM  K+ V WN ++ G   NG  + +  L   + +    PD
Sbjct: 355 LIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPD 414

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA------LINAYSKCGSIAG 417
             T   +L  C    +  E R+       N +  F S+  +      +++   + G +  
Sbjct: 415 GNTFIGLLCGCTHAGLVDEGRRYF-----NSMYRFFSLTPSIEHYGCMVDLLGRAGLLDE 469

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           A Q   ++  E + + W +++GA   H
Sbjct: 470 AHQLIRNMPMEANAIVWGALLGACRIH 496


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 334/576 (57%), Gaps = 8/576 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKA-FDDMEKLFDE 123
           ++ A +  +   F+  G  +   ++K G L + + +   ++ ++VK +       K+F++
Sbjct: 171 FAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN VTW  +I+ ++  G  G     F  M+      D  T + ++ AC   + + +G
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLG 290

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           ++LHS  ++ G  L+  V   L+++Y KC   G +  AR++FD++L  ++  W  M++ Y
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 239 ALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
                  + A+ +F  M L  +  ++FTFSS + +C  L + ++G Q+    +K  F   
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSV 410

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             VA SL+ MYA++G IDDA + FD +  KN++S+NT++  + +N +  EA++L  ++  
Sbjct: 411 NCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIED 470

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
                   T AS+LS   S+    +  Q+HA  IK+G++   S+ NALI+ YS+CG+I  
Sbjct: 471 QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIES 530

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A Q F  +++ ++++WTSII  +A HG + +++E+F KML   VRP+ + ++ VLSACSH
Sbjct: 531 AFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSH 590

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV+EG ++F  M +++ ++P  EHY C+ D+LGR G L EA   + SMP +  +    
Sbjct: 591 VGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWR 650

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
            F+GAC+VHG++ L K AA+ ++E EP  P  Y L+SN+YAS   W +V+ +RK M++  
Sbjct: 651 TFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKX 710

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             K  GCSW+E+  ++H F   D SHP+A  +Y  L
Sbjct: 711 LIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDEL 746



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 217/439 (49%), Gaps = 9/439 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +H+ +H     YS  LK   +      G  +H  + +  L       N ++ +Y KC  +
Sbjct: 58  VHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQW 117

Query: 115 DDMEKLFDEM-RVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
           +    +F  M   R++++W+ ++S   N   G      F  M+ +    +   F +  RA
Sbjct: 118 EKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRA 177

Query: 172 CVQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLV 229
           C  A+ + VG  +  F++K G+   +  V   L+D++ K  G +  A +VF+++  R+ V
Sbjct: 178 CSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAV 237

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W +M++          AI +F  M   G + D FT S ++++C  +    LG+Q+H   
Sbjct: 238 TWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQA 297

Query: 290 IKQSFDLDVLVATSLVDMYAK---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-G 345
           I+    LD  V   L++MYAK   +G++  A ++FD +   NV SW  M+ G+ Q G   
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+ L R M+     P+  T +S L +C +L+      QV  +A+K G  +   + N+L
Sbjct: 358 EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y++ G I  A + F  + E +L+++ ++I AYA +  S+E++E+F ++    +   +
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 466 IAFLEVLSACSHGGLVSEG 484
             F  +LS  +  G + +G
Sbjct: 478 FTFASLLSGAASIGTIGKG 496



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 175/335 (52%), Gaps = 7/335 (2%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T++  L+ C++    ++G  +H  + +    L+    ++L+ LY KCG  E A  +F
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 221 DEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
             +   RDL+ W+ MVSC+A N +G  A+  F  M   G   + + F++   +C T    
Sbjct: 125 RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFV 184

Query: 280 KLGRQIHGLVIKQSF-DLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVV 337
            +G  I G VIK  +   DV V   L+DM+ K  G++  A +VF+ M  +N V+W  M+ 
Sbjct: 185 SVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMIT 244

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
              Q G   EA+ L  DM+   + PD  TL+ ++S+C ++ +    +Q+H+ AI++G+  
Sbjct: 245 RLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTL 304

Query: 398 FLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH-GLSKESIEVF 453
              +   LIN Y+KC   GS+  A + F  + + ++ +WT++I  Y    G  +E++++F
Sbjct: 305 DRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLF 364

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
             M+   V P+   F   L AC++   +  G + F
Sbjct: 365 RGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 147/297 (49%), Gaps = 7/297 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  LK  A    L+ G+Q+ +H +KLG  +   + N ++ +Y +    DD  K FD
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD 435

Query: 123 EMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  +N++++NT+I               F  +    +     TF SLL        I  
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H+ ++K G  LN  V +AL+ +Y +CG +E A +VF+++  R+++ W  +++ +A 
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVL 299
           +     A+ +F+ M  EG++ +  T+ +++++C  +G    G +    +  +      + 
Sbjct: 556 HGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRME 615

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLL 352
               +VD+  ++G++ +A +  + M  K + + W T +     +G+   G+ A K++
Sbjct: 616 HYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMI 672



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI+    M  +G   D  T+S  +  C    S  +G  +H  + +    LD +   SL+ 
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 307 MYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +Y+K G  + A  +F  M ++++++SW+ MV  F  N  G  A+    DM++  + P+E 
Sbjct: 110 LYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKC-GSIAGALQCFG 423
             A+   +C +         +  + IK G +Q+ + +   LI+ + K  G +  A + F 
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            + E + VTWT +I      G + E+I++F  M+     PD      V+SAC++  L+
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELL 287



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG   +A+  L  M+     PD  T +  L  C           VH    ++ +Q     
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 402 ENALINAYSKCGSIAGALQCF---GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            N+LI+ YSKCG    A   F   GS +  DL++W++++  +A + +   ++  F  M+ 
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSR--DLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL--GRVGL 516
           +   P+   F     ACS    VS G   F  +I   ++  D      L D+   GR G 
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR-GD 220

Query: 517 LVEAYDLLASMP 528
           LV A+ +   MP
Sbjct: 221 LVSAFKVFEKMP 232


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 324/584 (55%), Gaps = 12/584 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF-DEMRVR 127
           +L+ SA    L +GK++HS+++  G  N       ++++Y KC   +    +F D     
Sbjct: 43  SLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEI 102

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+  +N +ISG I  G       ++++M  + V  D  TF   ++AC+   +I   +++H
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIH 159

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             + K G  L+ F+ SALV+ Y K G +E A+  F+E+  RD+VLWN MV+ YA     +
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             +  F  M  E +    FT + +++    +G    GR IHG  +K  +D  V V+ SL+
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLI 279

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K   I+DA  +F+ M  K++ SWN++V    Q GD    ++LL  ML     PD V
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAF------LSIENALINAYSKCGSIAGAL 419
           T+ ++L +C  L+     R++H Y I +G+         + ++NA+I+ Y+KCGS+  A 
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D+ +W  +I  Y  HG   E++E+F +M    ++PD + F+ VLSACSH G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            VS+G  +   M S Y + P  EHYTC+ D+LGR G L EAY+L  +MPIE       A 
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC++H    LA+ AA+++ ELEP    +Y L+SNVY +   + +V  +R  MR     
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           K PGCSWIE+   +H FVS+DR+HP+A  +YA L ++   + E+
Sbjct: 580 KTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREH 623


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/605 (33%), Positives = 338/605 (55%), Gaps = 19/605 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H++ ++ G  N   + N ++ +Y K       + L      R++VTWNT++S 
Sbjct: 214 LLMGKQVHAYGLRKGELNSFII-NTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSS 272

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGL 195
           +           Y R M+L+ V  D  T +S+L AC   + +  G+ LH++ LK G    
Sbjct: 273 LCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDE 332

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLM 254
           N FV SALVD+Y  C  V    RVFD +  R + LWN M++ YA N   + A+ +F  + 
Sbjct: 333 NSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEME 392

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  +  T + +V +C   G+      IHG V+K+  D D  V  +L+DMY++ G I
Sbjct: 393 ESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKI 452

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-----------QGSFCPD 363
           D A R+F  M  +++V+WNT++ G+  +    +A+ +L  M            + S  P+
Sbjct: 453 DIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPN 512

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +TL +IL SC +LS   + +++HAYAIKN +   +++ +AL++ Y+KCG +  + + F 
Sbjct: 513 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 572

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   +++TW  I+ AY  HG S+++I++   M+   V+P+ + F+ V +ACSH G+V+E
Sbjct: 573 QIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNE 632

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE-PRSDTLGAFIGA 542
           GL+ F  M  DY + P S+HY C+ DLLGR G + EAY L+  +P    ++    + +GA
Sbjct: 633 GLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGA 692

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H ++ + + AA+ L++LEP+   +Y L++N+Y+S   W+    +R+ M+     K P
Sbjct: 693 CRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEP 752

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV--SGHCNVLDKEMDECT 660
           GCSWIE   E+H FV+ D SHPQ+  +   L T++  M +        C + + E DE  
Sbjct: 753 GCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKE 812

Query: 661 LWLPG 665
           + L G
Sbjct: 813 ILLCG 817



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 254/502 (50%), Gaps = 22/502 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           +   LK  A    +  GKQ+H+H+ K G   + +++ N ++++Y KC  F  + K+FD +
Sbjct: 96  FPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI 155

Query: 125 RVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ---ADDIE 179
             RN V+WN+LIS +            FR ML ++V     T  S+  AC      + + 
Sbjct: 156 SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLL 215

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G+++H++ L+ G  LN F+ + LV +YGK G +  ++ +      RDLV WN ++S   
Sbjct: 216 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLC 274

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDV 298
            N     A+     M LEG++ D FT SS++ +C  L   + G+++H   +K  S D + 
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V ++LVDMY     +   CRVFDGM  + +  WN M+ G+ QN    EA+ L  +M + 
Sbjct: 335 FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEES 394

Query: 359 S-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           +    +  T+A ++ +C       +   +H + +K G+     ++NAL++ YS+ G I  
Sbjct: 395 AGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDI 454

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI------EVFEKMLSH-----AVRPDSI 466
           A + FG +++ DLVTW +II  Y F    ++++      ++ E+  S      +++P+SI
Sbjct: 455 AKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSI 514

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             + +L +C+    +++G       I + ++  D    + L D+  + G L  +  +   
Sbjct: 515 TLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 573

Query: 527 MPIEPRSDTLGAFIGACKVHGS 548
           +PI     T    + A  +HG+
Sbjct: 574 IPIR-NVITWNVIVMAYGMHGN 594



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 196/400 (49%), Gaps = 28/400 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL-HVYVKCKAFDDMEKLFDEMR 125
           S  L   +    L+ GK+LH++ +K G  ++ S     L  +Y  CK      ++FD M 
Sbjct: 302 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMF 361

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDH--------ITFNSLLRACVQADD 177
            R I  WN +I+G          Y    LL  + ++          T   ++ ACV++  
Sbjct: 362 DRKIGLWNAMITGYAQ-----NEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGA 416

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
                 +H F++K G   + FV +AL+D+Y + G ++ A+R+F ++  RDLV WN +++ 
Sbjct: 417 FSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITG 476

Query: 238 YALNCLGDGAIAVFNLMRL-----------EGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           Y  +   + A+ + + M++             +K +  T  +++ SC  L +   G++IH
Sbjct: 477 YVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              IK +   DV V ++LVDMYAK G +  + +VFD +  +NV++WN +V+ +G +G+ +
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENAL 405
           +A+ +LR M+     P+EVT  S+ ++C    +  E  ++     K+ GV+        +
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACV 656

Query: 406 INAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFH 443
           ++   + G +  A Q    +         W+S++GA   H
Sbjct: 657 VDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIH 696



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 177/337 (52%), Gaps = 7/337 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF-VSSALVDLYGKCG 211
           M++  ++ D+  F +LL+A     D+++G+++H+ + K G+G++   V++ LV+LY KCG
Sbjct: 84  MIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 143

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                 +VFD +  R+ V WN ++S        + A+  F  M  E ++   FT  S+  
Sbjct: 144 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVAL 203

Query: 272 SCGTLGSSK---LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +C      +   +G+Q+H   +++  +L+  +  +LV MY K G +  +  +      ++
Sbjct: 204 ACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRD 262

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           +V+WNT++    QN    EA++ LR+M+     PD  T++S+L +C  L +    +++HA
Sbjct: 263 LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHA 322

Query: 389 YAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           YA+KNG +     + +AL++ Y  C  +    + F  + +  +  W ++I  YA +   +
Sbjct: 323 YALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDE 382

Query: 448 ESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSE 483
           E++ +F +M   A +  +S     V+ AC   G  S+
Sbjct: 383 EALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 8/249 (3%)

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VL 299
           N L +  +   +++ L G+K D F F +L+ +   L    LG+QIH  V K  + +D V 
Sbjct: 72  NLLREAVLTYIDMIVL-GIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVT 130

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           VA +LV++Y K G+     +VFD ++ +N VSWN+++           A++  R ML   
Sbjct: 131 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDED 190

Query: 360 FCPDEVTLASILSSCGSLSIS---CETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSI 415
             P   TL S+  +C +  +       +QVHAY ++ G + +F  I N L+  Y K G +
Sbjct: 191 VEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSF--IINTLVAMYGKMGKL 248

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A +    GS +  DLVTW +++ +   +    E++E   +M+   V PD      VL AC
Sbjct: 249 ASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPAC 308

Query: 476 SHGGLVSEG 484
           SH  ++  G
Sbjct: 309 SHLEMLRTG 317



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L +GK++H++ +K  L   +++ + ++ +Y KC       K+FD++ +RN++TWN
Sbjct: 524 AALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWN 583

Query: 134 TLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            ++   G+     +     R M++  V+ + +TF S+  AC  +  +  G ++  + +K 
Sbjct: 584 VIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIF-YNMKK 642

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV---LWNVMV-SCYALNCLGD 245
            +G+       + +VDL G+ G V++A ++ + ++ R+      W+ ++ +C   N L  
Sbjct: 643 DYGVEPSSDHYACVVDLLGRAGRVKEAYQLIN-LIPRNFDKAGAWSSLLGACRIHNNLEI 701

Query: 246 GAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
           G IA  NL++LE  +   Y   +++ +S G
Sbjct: 702 GEIAAQNLIQLEPNVASHYVLLANIYSSAG 731



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA-FLSIENA 404
           REAV    DM+     PD     ++L +   L      +Q+HA+  K G     +++ N 
Sbjct: 75  REAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANT 134

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L+N Y KCG      + F  + E + V+W S+I +       + ++E F  ML   V P 
Sbjct: 135 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPS 194

Query: 465 SIAFLEVLSACSHGGLVSEGL 485
           S   + V  ACS+  +  EGL
Sbjct: 195 SFTLVSVALACSNFPM-PEGL 214


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 315/574 (54%), Gaps = 20/574 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SAK   L+ G QLH  + KLG  +   L N ++ +Y KC   D   ++F  MR RN+
Sbjct: 224 LRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNV 283

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRL------DHITFNSLLRACVQADDIEVGRR 183
           V+W  L+ G +   G+ T   R  LL  +R       +  T ++ L+AC   +D+  G  
Sbjct: 284 VSWTALMVGFLQ-HGDATGCLR--LLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVG 340

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNC 242
           +H   ++ G+  +  V+S+LV LY K G + DARRVFD   L R L  WN M+S YA   
Sbjct: 341 IHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAG 400

Query: 243 LGDGAIAVFNLMRL------EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            G  A+ VF  MR       +  + D FTF+SL+ +CG LG+ + G Q+H  +    F  
Sbjct: 401 HGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFST 460

Query: 297 --DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
             + ++A +LVDMY K G +  A +VF+ +  KN + W T+VVG  Q G   EA++L R 
Sbjct: 461 ASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRR 520

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
             +     D   L+SI+      ++  + RQVH Y +K+     +S  N++++ Y KCG 
Sbjct: 521 FWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGL 580

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
              A + F  +   ++V+WT++I     HGL +E++ +FE+M +  V PD + +L +LSA
Sbjct: 581 PDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSA 640

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           CSH GLV E  RYF+ +  D  + P +EHY C+ DLLGR G L EA DL+ +MP+EP   
Sbjct: 641 CSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVG 700

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
                + AC+VH  + + + A + LL ++   PVNY  +SNV+A    W +  ++R  MR
Sbjct: 701 VWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMR 760

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSS--DRSHPQA 626
                K  GCSW+EI  E+H F     + +HPQA
Sbjct: 761 RRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQA 794



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 217/478 (45%), Gaps = 27/478 (5%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LLRA  +   +  G +LH  + K+GFG +  + + L+D+Y KCG ++ A  VF  +  R+
Sbjct: 223 LLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRN 282

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +V W  ++  +  +    G + +   MR   E    +Y T S+ + +C        G  I
Sbjct: 283 VVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEY-TLSASLKACCVTEDMGAGVGI 341

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD-GMTAKNVVSWNTMVVGFGQNGD 344
           HGL ++  ++   +VA+SLV +Y+K G I DA RVFD     + + +WN M+ G+   G 
Sbjct: 342 HGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGH 401

Query: 345 GREAVKLLRDML------QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           GR+A+ + R+M       +    PDE T AS+L +CG L    E  QVHA    +G    
Sbjct: 402 GRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTA 461

Query: 399 LS--IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
            +  +  AL++ Y KCG +  A+Q F  ++  + + WT+++  +A  G   E++E+F + 
Sbjct: 462 SNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRF 521

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
                R D+     ++   +   LV +G R  +          D      + D+  + GL
Sbjct: 522 WRSGARADAHVLSSIVGVLADFALVEQG-RQVHCYGVKSPAGTDVSAGNSIVDMYLKCGL 580

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL-----EPSKPVNYA 571
             EA  +   +P    +  + ++       G  GL + A     E+     EP +    A
Sbjct: 581 PDEAERMFREIP----ARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLA 636

Query: 572 LVS-----NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           L+S      +    R +F   R  + +R   +H       +  AGE+       R+ P
Sbjct: 637 LLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMP 694



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 8/236 (3%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
            + L+ +     S + G Q+HG + K  F  D ++  +L+DMYAK G +D A  VF GM 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLASILSSCGSLSISCETR 384
            +NVVSW  ++VGF Q+GD    ++LL +M   S   P+E TL++ L +C          
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
            +H   ++ G +    + ++L+  YSK G I  A + F        L TW ++I  YA  
Sbjct: 340 GIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHA 399

Query: 444 GLSKESIEVFEKMLSHAV------RPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           G  ++++ VF +M           +PD   F  +L AC   G   EG +    M +
Sbjct: 400 GHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAA 455



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 150/369 (40%), Gaps = 61/369 (16%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  + V A F  ++QG+Q+H + +K      +S  N ++ +Y+KC   D+ E++F E+  
Sbjct: 534 SSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPA 593

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W T+I+G+     G      F  M    V  D +T+ +LL AC  A  ++  RR 
Sbjct: 594 RNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRY 653

Query: 185 HSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            S I +           + +VDL G+ G + +AR                          
Sbjct: 654 FSCIRRDRTVRPKAEHYACMVDLLGRAGELREAR-------------------------- 687

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
                   +L+R   M+     + +L+++C       +GR+   +++    D  V   T 
Sbjct: 688 --------DLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVT- 738

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNV-----VSWNTM--VVGFGQNGDGREA-------V 349
           L +++A+ G   +  +V D M  + +      SW  +   V F   G   EA        
Sbjct: 739 LSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQAGDIR 798

Query: 350 KLLRDM-----LQGSFCPDEVTLA----SILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           ++LRD+      Q  +C D+V  A       S   SL    E   V  + ++NGV     
Sbjct: 799 RVLRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGG 858

Query: 401 IENALINAY 409
                I  Y
Sbjct: 859 GHRQPIRVY 867


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 327/601 (54%), Gaps = 39/601 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +H   +K G+   + + N ++++Y  C    + + +FD M  RN++TWN+L S 
Sbjct: 258 LKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASC 317

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +NCG        FR M L+ V+ D +  +S+L AC Q  D++ G+ +H F +K G   +
Sbjct: 318 YVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVED 377

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC-LGDGAIAVFNLMR 255
            FV +ALV+LY  C  V +A+ VFD +  R++V WN + SCY +NC      + VF  M 
Sbjct: 378 VFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCY-VNCGFPQKGLNVFREMV 436

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           L G+K D  T  S++++C  L   K G+ IHG  ++     DV V  +L+ +YAK   + 
Sbjct: 437 LNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVR 496

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGR----------------------------- 346
           +A  VFD +  + V SWN ++  +  N +                               
Sbjct: 497 EAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCV 556

Query: 347 ------EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
                 EA+++ R M    F PDE T+ SIL +C         +++H Y  ++     L+
Sbjct: 557 KNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLA 616

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
             NAL++ Y+KCG ++ +   F  +   D+ +W ++I A   HG  KE++ +FEKML   
Sbjct: 617 RTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSM 676

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           V+PDS  F  VLSACSH  LV EG++ FN M  D+ + P++EHYTC+ D+  R G L EA
Sbjct: 677 VKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEA 736

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           Y  +  MP+EP +    AF+  C+V+ ++ LAK +A+KL E++P+   NY  + N+  + 
Sbjct: 737 YGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTA 796

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
           + W + +++RK+M++    K PGCSW  +   +HTFV+ D+S+ ++  +Y  L  +F  +
Sbjct: 797 KLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKI 856

Query: 641 E 641
           +
Sbjct: 857 K 857



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/423 (31%), Positives = 230/423 (54%), Gaps = 9/423 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           KQ H    + G+ + +S+ N  +H Y KCK  +   ++FD++  R++VTWN+L +  +NC
Sbjct: 60  KQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNC 119

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        FR+M L+ V+ + +T +S+L  C    D++ G+ +H F+++ G   + FVS
Sbjct: 120 GFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVS 179

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC-LGDGAIAVFNLMRLEGM 259
           SA V+ Y KC  V +A+ VFD +  RD+V WN + SCY +NC      + VF  M L+G+
Sbjct: 180 SAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCY-VNCGFPQKGLNVFREMVLDGV 238

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K D  T S ++++C  L   K G+ IHG  +K     +V V+ +LV++Y     + +A  
Sbjct: 239 KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQA 298

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VFD M  +NV++WN++   +   G  ++ + + R+M      PD + ++SIL +C  L  
Sbjct: 299 VFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKD 358

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               + +H +A+K+G+   + +  AL+N Y+ C  +  A   F  +   ++VTW S+   
Sbjct: 359 LKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSC 418

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----HGGLVSEGLRYFNLMISD 494
           Y   G  ++ + VF +M+ + V+PD +  L +L ACS       G V  G    + M+ D
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478

Query: 495 YHI 497
             +
Sbjct: 479 VFV 481



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/416 (32%), Positives = 226/416 (54%), Gaps = 4/416 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK++H  +++ G+   + + +  ++ Y KC    + + +FD M  R++VTWN+L S 
Sbjct: 157 LKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +NCG        FR M+LD V+ D +T + +L AC    D++ G+ +H F LK G   N
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC-LGDGAIAVFNLMR 255
            FVS+ALV+LY  C  V +A+ VFD +  R+++ WN + SCY +NC      + VF  M 
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCY-VNCGFPQKGLNVFREMG 335

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           L G+K D    SS++ +C  L   K G+ IHG  +K     DV V T+LV++YA    + 
Sbjct: 336 LNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVR 395

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A  VFD M  +NVV+WN++   +   G  ++ + + R+M+     PD VT+ SIL +C 
Sbjct: 396 EAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACS 455

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L      + +H +A+++G+   + + NAL++ Y+KC  +  A   F  +   ++ +W  
Sbjct: 456 DLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNG 515

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           I+ AY  +   ++ + +F +M    V+ D I +  V+  C     + E +  F  M
Sbjct: 516 ILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM 571



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 191/377 (50%), Gaps = 13/377 (3%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           ++ D   F ++ +AC  + D    ++ H    + G   +  + +A +  YGKC  VE AR
Sbjct: 36  IKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGAR 95

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           RVFD+++ RD+V WN + +CY +NC      + VF  M L  +K +  T SS++  C  L
Sbjct: 96  RVFDDLVARDVVTWNSLSACY-VNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDL 154

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
              K G++IHG V++     DV V+++ V+ YAK   + +A  VFD M  ++VV+WN++ 
Sbjct: 155 QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLS 214

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
             +   G  ++ + + R+M+     PD VT++ ILS+C  L      + +H +A+K+G+ 
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV 274

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             + + NAL+N Y  C  +  A   F  +   +++TW S+   Y   G  ++ + VF +M
Sbjct: 275 ENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM 334

Query: 457 LSHAVRPDSIAFLEVLSACSH-----GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
             + V+PD +A   +L ACS       G    G    + M+ D  +       T L +L 
Sbjct: 335 GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVC------TALVNLY 388

Query: 512 GRVGLLVEAYDLLASMP 528
                + EA  +   MP
Sbjct: 389 ANCLCVREAQTVFDLMP 405



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 208/446 (46%), Gaps = 70/446 (15%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   ++   L+ GK +H   +K G+   + +   ++++Y  C    + + +FD M  
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH 406

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+VTWN+L S  +NCG        FR M+L+ V+ D +T  S+L AC    D++ G+ +
Sbjct: 407 RNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVI 466

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN--- 241
           H F ++ G   + FV +AL+ LY KC  V +A+ VFD +  R++  WN +++ Y  N   
Sbjct: 467 HGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEY 526

Query: 242 ----------------------------CLGDG----AIAVFNLMRLEGMKGDYFTFSSL 269
                                       C+ +     A+ +F  M+  G K D  T  S+
Sbjct: 527 EKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSI 586

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + +C      ++G++IH  V +   D D+    +LVDMYAK G +  +  VFD M  K+V
Sbjct: 587 LRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDV 646

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
            SWNTM+   G +G+G+EA+ L   ML     PD  T   +LS+C            H+ 
Sbjct: 647 FSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACS-----------HSM 695

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            ++ GVQ F S+                       + EP+   +T ++  Y+  G  +E+
Sbjct: 696 LVEEGVQIFNSMSR-------------------DHLVEPEAEHYTCVVDIYSRAGCLEEA 736

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSAC 475
               ++M    + P +IA+   L+ C
Sbjct: 737 YGFIQRM---PMEPTAIAWKAFLAGC 759



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 116/234 (49%)

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L + AI ++   R  G+K D   F ++  +C     +   +Q H    +     DV +  
Sbjct: 20  LPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGN 79

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           + +  Y K   ++ A RVFD + A++VV+WN++   +   G  ++ + + R M       
Sbjct: 80  AFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKA 139

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           + +T++SIL  C  L      +++H + +++G+   + + +A +N Y+KC  +  A   F
Sbjct: 140 NPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVF 199

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             +   D+VTW S+   Y   G  ++ + VF +M+   V+PD +    +LSACS
Sbjct: 200 DLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           +G   EA+K+          PD+    ++  +C +   + + +Q H  A + GV + +SI
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            NA I+AY KC  + GA + F  +   D+VTW S+   Y   G  ++ + VF KM  + V
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 462 RPDSIAFLEVLSACS-----------HGGLVSEGL 485
           + + +    +L  CS           HG +V  G+
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGM 172


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/570 (35%), Positives = 312/570 (54%), Gaps = 6/570 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +K  +  G +  G+QLH+H++K      +  QN ++ +Y K     D   +F  M 
Sbjct: 167 FGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMA 226

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGR 182
            R++++W ++I+G    G  +    YF+ ML   V L +   F S+  AC      E GR
Sbjct: 227 TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGR 286

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LH   +K G G + F   +L D+Y KCG +  AR VF ++   DLV WN +++ +A   
Sbjct: 287 QLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGG 346

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               AIA F+ MR +G+  D  T  SL+ +C +      G Q+HG + K   DLDV V  
Sbjct: 347 DAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCN 406

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           +L+ MYAK   + DA   F+ M    ++VSWN ++    ++    E  +LL+ M      
Sbjct: 407 TLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHR 466

Query: 362 PDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           PD +TL ++L +    ++S E   QVH YA+K G+    S+ N LI+ Y+KCGS+  A +
Sbjct: 467 PDYITLTNVLGASAE-TVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHK 525

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F S+  PD+V+W+S+I  YA  G  +E++++F+ M    V+P+ + F+ VL+ACSH GL
Sbjct: 526 IFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGL 585

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG + +  M  ++ I P  EH +C+ DLL R G L EA   +  M  +P        +
Sbjct: 586 VEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLL 645

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            ACK HG++ + K AAE +L+++PS    + L+ N+YAS+  W DVARLR +M+     K
Sbjct: 646 AACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRK 705

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           VPG SWIE+   IH F   D  HP+   +Y
Sbjct: 706 VPGQSWIEVKDRIHVFFVEDSLHPERNKIY 735



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 243/472 (51%), Gaps = 6/472 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y+  +   +    L+ GK++H H++K      L+LQN +L++Y KCK+  D +K+FD 
Sbjct: 64  STYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDA 123

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN+V+W ++I+G    G  GN   ++ +ML   V  D  TF S+++AC    DI +G
Sbjct: 124 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 183

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R+LH+ +LK  FG +    +AL+ +Y K   + DA  VF  +  RDL+ W  M++ ++  
Sbjct: 184 RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 243

Query: 242 CLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                A+  F  M  +G+   + F F S+ ++C +L   + GRQ+HG+ IK     DV  
Sbjct: 244 GYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFA 303

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             SL DMYAK G +  A  VF  +   ++V+WN ++ GF   GD +EA+     M     
Sbjct: 304 GCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGL 363

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PDE+T+ S+L +C S S   +  QVH Y  K G+   + + N L+  Y+KC  +  A+ 
Sbjct: 364 IPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIF 423

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            F  ++   DLV+W +I+ A   H  ++E   + + M     RPD I    VL A +   
Sbjct: 424 FFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETV 483

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
            +  G +     +    +  D+     L DL  + G L  A+ +  SM I P
Sbjct: 484 SIEIGNQVHCYALKT-GLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM-INP 533



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 100/185 (54%), Gaps = 8/185 (4%)

Query: 347 EAVKLLRDMLQGS-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           EA+K    + + + FC    T A ++S+C  L      +++H + +K+     L+++N +
Sbjct: 45  EAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHI 104

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +N Y KC S+  A + F ++ E ++V+WTS+I  Y+ +G    ++E + +ML   V PD 
Sbjct: 105 LNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQ 164

Query: 466 IAFLEVLSACSHGGLVSEGLR-YFNLMISDY--HILPDSEHYTCLTDLLGRVGLLVEAYD 522
             F  ++ ACS  G +  G + + +++ S++  HI+  +     L  +  +  L+++A D
Sbjct: 165 FTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQN----ALISMYTKSNLIIDALD 220

Query: 523 LLASM 527
           + + M
Sbjct: 221 VFSRM 225


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 324/584 (55%), Gaps = 12/584 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF-DEMRVR 127
           +L+ SA    L +GK++HS+++  G  N       ++++Y KC   +    +F D     
Sbjct: 43  SLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEI 102

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+  +N +ISG I  G       ++++M  + V  D  TF   ++AC+   +I   +++H
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIH 159

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             + K G  L+ F+ SALV+ Y K G +E A+  F+E+  RD+VLWN MV+ YA     +
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             +  F  M  E +    FT + +++    +G    GR IHG  +K  +D  V V+ SL+
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLI 279

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K   I+DA  +F+ M  K++ SWN++V    Q GD    ++LL  ML     PD V
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAF------LSIENALINAYSKCGSIAGAL 419
           T+ ++L +C  L+     R++H Y I +G+         + ++NA+I+ Y+KCGS+  A 
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D+ +W  +I  Y  HG   E++E+F +M    ++PD + F+ VLSACSH G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            VS+G  +   M S Y + P  EHYTC+ D+LGR G L EAY+L  +MPIE       A 
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC++H    LA+ AA+++ ELEP    +Y L+SNVY +   + +V  +R  MR     
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           K PGCSWIE+   +H FVS+DR+HP+A  +YA L ++   + E+
Sbjct: 580 KTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREH 623


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 328/582 (56%), Gaps = 8/582 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A  G+++ G+Q+HS ++K+G    +   + +L +Y KC+  +D  ++F  + 
Sbjct: 103 FGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSIN 162

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRR--MLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN VTWN LISG    G   T ++    M L+ V +D  TF  LL      D  ++  +
Sbjct: 163 IRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQ 222

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           +H+ I+K G   +  V +A++  Y +CG +EDA RVFD  +  RDLV WN M++ Y +N 
Sbjct: 223 VHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNN 282

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A  +F  M++ G + D +T++S++++         G+ +HGLVIK+  +  V ++ 
Sbjct: 283 QEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISN 342

Query: 303 SLVDMYAKN--GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           SL+ MY K+   ++D+A  +F+ +  K+ VSWN+++ GF Q+G   +A+K   +M     
Sbjct: 343 SLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYV 402

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D    +++L SC  L+     +QVH   +K+G +    + ++LI  YSKCG I  A +
Sbjct: 403 VIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARK 462

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F +  +   + W S+I  YA HG  K ++++F  M    V+ D I F+ VL+ACSH GL
Sbjct: 463 SFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGL 522

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG  +   M SDY I P  EHY C+ DLLGR G L EA  L+ +MP EP +      +
Sbjct: 523 VEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 582

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC+  G I LA   A  LLELEP +   Y L+S+++   R W + A ++++M++    K
Sbjct: 583 GACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKK 642

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           VPG SWIE+  E+ +F + DRSHP    +Y  L     LMEE
Sbjct: 643 VPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGE---LMEE 681



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 217/410 (52%), Gaps = 9/410 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           + F  L +    H   +K G    +   N ++  Y KC       K+F E   R+ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 134 TLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           T+I+G +N G   T   + + M      +D  +F S+L+       +EVG+++HS ++K+
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G+  N F  SAL+D+Y KC  VEDA  VF  +  R+ V WN ++S YA   +GD   A +
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQ--VGDRGTAFW 187

Query: 252 NL--MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
            L  M LEG++ D  TF+ L+         KL  Q+H  ++K     D  V  +++  Y+
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 310 KNGNIDDACRVFDG-MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           + G+I+DA RVFDG +  +++V+WN+M+  +  N    EA +L  +M    F PD  T  
Sbjct: 248 ECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYT 307

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY--SKCGSIAGALQCFGSVK 426
           S++S+    S   + + +H   IK G++  + I N+LI  Y  S   S+  AL  F S++
Sbjct: 308 SVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLE 367

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             D V+W SI+  ++  GLS+++++ FE M S  V  D  AF  VL +CS
Sbjct: 368 NKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCS 417



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 172/334 (51%), Gaps = 11/334 (3%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L   +F +L RA V           H   +K G   + + ++ ++  Y KCG +  A ++
Sbjct: 7   LSQSSFTALYRASVN----------HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKM 56

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F E   RD V WN M++ +      + A+     M+  G   D ++F S++     +G  
Sbjct: 57  FGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYV 116

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           ++G+Q+H +++K  ++ +V   ++L+DMYAK   ++DA  VF  +  +N V+WN ++ G+
Sbjct: 117 EVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGY 176

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q GD   A  LL  M       D+ T A +L+      +   T QVHA  +K+G+ +  
Sbjct: 177 AQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDT 236

Query: 400 SIENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           ++ NA+I AYS+CGSI  A + F G+++  DLVTW S++ AY  +   +E+ ++F +M  
Sbjct: 237 TVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQV 296

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
               PD   +  V+SA   G    +G     L+I
Sbjct: 297 LGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVI 330



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L+  +    LQ G+Q+H  ++K G      + + ++ +Y KC   +D  K FD
Sbjct: 406 HYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFD 465

Query: 123 EMRVRNIVTWNTLISGIINCG-GNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
                + + WN+LI G    G G +    F  M    V+LDHITF ++L AC     +E 
Sbjct: 466 ATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEE 525

Query: 181 GRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
           G   L S     G        + ++DL G+ G +++A+ + + +    D ++W  ++
Sbjct: 526 GWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 582


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/573 (34%), Positives = 323/573 (56%), Gaps = 3/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL+      F++ G Q+H+ I+K G    + + N ++ +YV+     +   +F  + 
Sbjct: 163 FAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE 222

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++IVTWN++++G I  G       +F  +   +++ D ++  S++ A  +   +  G+ 
Sbjct: 223 GKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H++ +K GF  N  V + L+D+Y KC  +    R FD +  +DL+ W    + YA N  
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +   +++EGM  D     S++ +C  L      ++IHG  I+     D ++  +
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNT 401

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++D+Y + G ID A R+F+ +  K+VVSW +M+  +  NG   +A+++   M +    PD
Sbjct: 402 IIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD 461

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VTL SILS+  SLS   + +++H + I+ G     SI N L++ Y++CGS+  A + F 
Sbjct: 462 YVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFT 521

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             K  +L+ WT++I AY  HG  + ++E+F +M    + PD I FL +L ACSH GLV+E
Sbjct: 522 CTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNE 581

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G  +  +M  +Y + P  EHYTCL DLLGR   L EAY ++ SM  EP  +   A +GAC
Sbjct: 582 GKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGAC 641

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H +  + + AAEKLLEL+   P NY LVSNV+A+   W DV  +R  M+ +   K PG
Sbjct: 642 RIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPG 701

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           CSWIE+  +IH F+S D+ HP+   +Y  L  V
Sbjct: 702 CSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQV 734



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 150/502 (29%), Positives = 261/502 (51%), Gaps = 11/502 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN-IVTWNTLISGII 140
           G ++H   +K G  + + + N ++ +Y KC   +   KLFD M VRN +V+WN++IS   
Sbjct: 77  GAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        F  ML   V  +  TF + L+AC  +  I++G ++H+ ILK G  L+ +
Sbjct: 137 GNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY 196

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V++ALV +Y + G + +A  +F  +  +D+V WN M++ +  N L   A+  F  ++   
Sbjct: 197 VANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD 256

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K D  +  S++ + G LG    G++IH   IK  FD ++LV  +L+DMYAK   +    
Sbjct: 257 LKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGG 316

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           R FD M  K+++SW T   G+ QN    +A++LLR +       D   + SIL +C  L+
Sbjct: 317 RAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLN 376

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + +++H Y I+ G+   + ++N +I+ Y +CG I  A++ F S++  D+V+WTS+I 
Sbjct: 377 CLGKIKEIHGYTIRGGLSDPV-LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMIS 435

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            Y  +GL+ +++EVF  M    + PD +  + +LSA      + +G      +I    IL
Sbjct: 436 CYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFIL 495

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
             S   T L D+  R G + +AY +        ++  L  +      +G  G  + A E 
Sbjct: 496 EGSISNT-LVDMYARCGSVEDAYKIFTC----TKNRNLILWTAMISAYGMHGYGEAAVEL 550

Query: 559 LLELEPSK--PVNYALVSNVYA 578
            + ++  K  P +   ++ +YA
Sbjct: 551 FMRMKDEKIIPDHITFLALLYA 572



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/483 (31%), Positives = 244/483 (50%), Gaps = 24/483 (4%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHIT 164
           +Y KC +  D E +FD+M  R+I TWN ++ G ++ G        +R M    V  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  LL+AC   +D+  G  +H   +K G     FV ++LV LY KC  +  AR++FD + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 225 CR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            R D+V WN ++S Y+ N +   A+ +F+ M   G+  + +TF++ + +C      KLG 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIH  ++K    LDV VA +LV MY + G + +A  +F  +  K++V+WN+M+ GF QNG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA++   D+      PD+V++ SI+ + G L      +++HAYAIKNG  + + + N
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            LI+ Y+KC  ++   + F  +   DL++WT+    YA +    +++E+  ++    +  
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLM--ISDYHI---LPDSEHYTCLTDLLGRVGLLV 518
           D+     +L AC        GL     +  I  Y I   L D      + D+ G  G++ 
Sbjct: 361 DATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIID 413

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE-----KLLELEPSKPVNYALV 573
            A  +  S  IE +       + +C VH   GLA  A E     K   LEP      +++
Sbjct: 414 YAVRIFES--IECKDVVSWTSMISCYVHN--GLANKALEVFSSMKETGLEPDYVTLVSIL 469

Query: 574 SNV 576
           S V
Sbjct: 470 SAV 472


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 317/571 (55%), Gaps = 6/571 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + A+   +  GFL+ G+Q H +  ++ +    S+ N ++ +Y KC       KLFD M  
Sbjct: 219 ASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMEN 278

Query: 127 RNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W T+I+G +  +C       F ++  +  + D     S+L +C     I  GR++
Sbjct: 279 RNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQV 338

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  +K     + +V ++L+D+Y KC  + +AR VF+ +   D + +N M+  Y+   LG
Sbjct: 339 HAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSR--LG 396

Query: 245 D--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           D  GAI VF+ MR   +K    TF SL+    +  + +L +QIHGL++K    LD+   +
Sbjct: 397 DLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGS 456

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+D+Y+K   ++DA  VF+ M  +++V WN M+ G  QN  G EAVKL   +      P
Sbjct: 457 SLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAP 516

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E T  ++++   +L      +Q HA  IK G  +   + NALI+ Y+KCG I      F
Sbjct: 517 NEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLF 576

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            S    D++ W S+I  YA HG ++E++ VF  M    V P+ + F+ VLSAC+H GLV 
Sbjct: 577 ESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVD 636

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGLR+F+ M + Y I P +EHY  + +L GR G L  A + +  MPIEP +    + + A
Sbjct: 637 EGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSA 696

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C + G++ + ++A E  L  +P+      L+SN+YAS   W D  +LR+ M      K P
Sbjct: 697 CHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEP 756

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G SWIE+  E+HTF++  R HP+A  +Y++L
Sbjct: 757 GYSWIEVMKEVHTFIARGREHPEADVIYSLL 787



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 212/395 (53%), Gaps = 4/395 (1%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCG 143
           H+  +  G    L L N +L  Y K     D  +LFD M  +N+V+W + IS      C 
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 144 GNVTPYFR--RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            +    F   +        +     S LRAC Q+  +  G+++H   +++G   N +V +
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGT 153

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL++LY K G ++ A  VFD +  ++ V W  +++ Y+    G  A+ +F  M L+G++ 
Sbjct: 154 ALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRP 213

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D F  +S V++C  LG  + GRQ HG   + + + D  V  +L+D+Y K   +  A ++F
Sbjct: 214 DRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLF 273

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D M  +N+VSW TM+ G+ QN    EA+ +   + Q  + PD    ASIL+SCGSL+   
Sbjct: 274 DCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIW 333

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
           + RQVHA+AIK  +++   ++N+LI+ Y+KC  +  A   F ++ E D +++ ++I  Y+
Sbjct: 334 QGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYS 393

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             G    +I+VF KM   +++P  + F+ +L   S
Sbjct: 394 RLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSS 428



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 236/464 (50%), Gaps = 7/464 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+  A+   +  G+Q+H   +++GL   + +   ++++Y K    D    +FD + V
Sbjct: 118 ASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPV 177

Query: 127 RNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N VTW  +I+G   I  GG     F +M LD VR D     S + AC     +E GR+ 
Sbjct: 178 KNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQT 237

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H +  ++    +  V +AL+DLY KC  +  AR++FD +  R+LV W  M++ Y  N   
Sbjct: 238 HGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCD 297

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+A+F  +  EG + D F  +S++NSCG+L +   GRQ+H   IK + + D  V  SL
Sbjct: 298 AEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSL 357

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK  ++ +A  VF+ +   + +S+N M+ G+ + GD   A+ +   M   S  P  
Sbjct: 358 IDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSP 417

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +T  S+L    S S    ++Q+H   +K+G    L   ++LI+ YSK   +  A   F  
Sbjct: 418 LTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNL 477

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D+V W ++I   A +   +E++++F ++    + P+   F+ +++  S    +  G
Sbjct: 478 MHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHG 537

Query: 485 LRYFNLMISDYHILPDSEHYT--CLTDLLGRVGLLVEAYDLLAS 526
            ++   +I       DS+H+    L D+  + G + E   L  S
Sbjct: 538 QQFHAQIIKAG---ADSDHHVSNALIDMYAKCGFIKEGRLLFES 578


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/572 (34%), Positives = 312/572 (54%), Gaps = 2/572 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G LQ+G QLHS++ K G+ +   ++  +L +YVKC   +    +F+    
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR 307

Query: 127 RNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N+V WN ++   G IN        F +M    +R +  T+  +LR C    +I++G ++
Sbjct: 308 TNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI 367

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS  +K GF  + +VS  L+D+Y K G++E ARRV + +  +D+V W  M++ Y  +   
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+A F  M+  G+  D    +S ++ C  + + + G QIH  +    +  DV +  +L
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNAL 487

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V++YA+ G I +A   F+ +  K+ ++WN +V GF Q+G   EA+K+   M Q     + 
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T  S LS+  +L+   + +Q+HA  IK G      + NALI+ Y KCGS   A   F  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + E + V+W +II + + HG   E++++F++M    ++P+ + F+ VL+ACSH GLV EG
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L YF  M  +Y I P  +HY C+ D+ GR G L  A   +  MPI   +      + ACK
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH +I + ++AA+ LLELEP    +Y L+SN YA    W +  ++RKMMRD    K PG 
Sbjct: 728 VHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGR 787

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           SWIE+   +H F   DR HP A  +Y  L  +
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVI 819



 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 257/484 (53%), Gaps = 6/484 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K     QG+ +H+   K G C+++ + N V+ +Y++C +F   E++F +M  
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ VT+NTLISG   C  G +    F  M    +  D +T +SLL AC    D++ G +L
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCL 243
           HS++ K G   +  +  +L+DLY KCG VE A  +F+     ++VLWN+M+  +  +N L
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL 326

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M+  G++ + FT+  ++ +C       LG QIH L +K  F+ D+ V+  
Sbjct: 327 AK-SFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K G ++ A RV + +  K+VVSW +M+ G+ Q+   ++A+   ++M +    PD
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + LAS +S C  ++   +  Q+HA    +G    +SI NAL+N Y++CG I  A   F 
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++  D +TW  ++  +A  GL +E+++VF +M    V+ +   F+  LSA ++   + +
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +    +I   H   ++E    L  L G+ G   +A    + M  E    +    I +C
Sbjct: 566 GKQIHARVIKTGHSF-ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623

Query: 544 KVHG 547
             HG
Sbjct: 624 SQHG 627



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 5/441 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN-- 141
           ++H+  +  GL     + N ++ +Y K        ++F+E+  R+ V+W  ++SG     
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            G      +R+M    V       +S+L +C +A+    GR +H+   K GF    FV +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           A++ LY +CG    A RVF ++  RD V +N ++S +A    G+ A+ +F  M+  G+  
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T SSL+ +C +LG  + G Q+H  + K     D ++  SL+D+Y K G+++ A  +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +     NVV WN M+V FGQ  D  ++ +L   M      P++ T   IL +C       
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+ ++K G ++ + +   LI+ YSK G +  A +    +KE D+V+WTS+I  Y 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   K+++  F++M    + PD+I     +S C+    + +GL+ +  + +S Y    D
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS--GD 480

Query: 501 SEHYTCLTDLLGRVGLLVEAY 521
              +  L +L  R G + EA+
Sbjct: 481 VSIWNALVNLYARCGRIREAF 501



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 1/318 (0%)

Query: 160 LDHITFNSLLRACV-QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           L  + F   LRAC       +V   +H+  +  G G    V + L+DLY K G V  ARR
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARR 98

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+E+  RD V W  M+S YA N LG+ A+ ++  M   G+    +  SS+++SC     
Sbjct: 99  VFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR IH    K  F  ++ V  +++ +Y + G+   A RVF  M  ++ V++NT++ G
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISG 218

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q G G  A+++  +M      PD VT++S+L++C SL    +  Q+H+Y  K G+ + 
Sbjct: 219 HAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSD 278

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             +E +L++ Y KCG +  AL  F S    ++V W  ++ A+       +S E+F +M +
Sbjct: 279 YIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQA 338

Query: 459 HAVRPDSIAFLEVLSACS 476
             +RP+   +  +L  C+
Sbjct: 339 AGIRPNQFTYPCILRTCT 356



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 6/203 (2%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H+  +F S AL  SA    ++QGKQ+H+ ++K G   +  + N ++ +Y KC +F+D + 
Sbjct: 545 HNVFTFVS-ALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADD 177
            F EM  RN V+WNT+I+     G  +     F +M  + ++ + +TF  +L AC     
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 178 IEVG-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
           +E G     S   + G        + ++D++G+ G ++ A++  +E+ +  D ++W  ++
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 236 S-CYALNCLGDGAIAVFNLMRLE 257
           S C     +  G  A  +L+ LE
Sbjct: 724 SACKVHKNIEVGEFAAKHLLELE 746


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 306/560 (54%), Gaps = 2/560 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--C 142
           LH+H +  G  + + + + ++ +Y K        K+FD M  R+ V WNT+I+G++   C
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             +    FR M+ D VR+D  T  ++L A  +  +++VG  +    LK+GFG   +V + 
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTG 249

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ LY KCG V  AR +F  +   DL+ +N M+S +  N   + ++ +F  +   G +  
Sbjct: 250 LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVS 309

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T   L+      G   L   IHG  +K    L+  V+T+   +Y K   ID A  +FD
Sbjct: 310 SSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFD 369

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
               K VV+WN M+ G+ QNG    A+ L ++M++  F P+ VT+ +ILS+C  L     
Sbjct: 370 ESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSF 429

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + VH       ++  + +  AL++ Y+KCG+I+ A Q F S+ E + VTW ++I  Y  
Sbjct: 430 GKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGL 489

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG   E+++++ +ML     P ++ FL VL ACSH GLV EG   F+ M++ Y I P  E
Sbjct: 490 HGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIE 549

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HY C+ D+LGR G L +A + +  MP+EP     G  +GAC +H    +A+ A+E+L EL
Sbjct: 550 HYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFEL 609

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           +P     Y L+SN+Y+ ER +   A +R++++     K PGC+ IE+ G  H FVS DRS
Sbjct: 610 DPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRS 669

Query: 623 HPQAVHMYAMLCTVFGLMEE 642
           H  A  +YA L  + G M E
Sbjct: 670 HSHATDIYAKLEKLTGKMRE 689



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 4/271 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           + + + FG L     +H   +K G+    ++      +Y K    D    LFDE   + +
Sbjct: 317 IPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTV 376

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN +ISG    G   T    F+ M+      + +T  ++L AC Q   +  G+ +H  
Sbjct: 377 VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHL 436

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I       N +VS+ALVD+Y KCG + +A ++FD +  ++ V WN M+  Y L+  G  A
Sbjct: 437 IKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEA 496

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVD 306
           + ++N M   G      TF S++ +C   G    G +I H +V K   +  +     +VD
Sbjct: 497 LKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVD 556

Query: 307 MYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           +  ++G ++ A      M  +     W T++
Sbjct: 557 ILGRSGQLEKALEFIKKMPVEPGPAVWGTLL 587



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 177/399 (44%), Gaps = 40/399 (10%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCG 274
           AR +F  V   D+ L+NV+V  ++LN     +I+++ +L R   +  D FT++  V +C 
Sbjct: 63  ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC- 121

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
              + K    +H   I   +  +V V ++LVD+Y K   +  A +VFDGM  ++ V WNT
Sbjct: 122 --SNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNT 179

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G  +N    ++++L R+M+      D  T+ ++L +   L        +   A+K G
Sbjct: 180 MINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIG 239

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
                 +   LI+ YSKCG +  A   F  +  PDL+ + ++I  +  +G ++ S+++F 
Sbjct: 240 FGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFR 299

Query: 455 KMLSHAVRPDSIAFLEVLS----------ACS-HGGLVSEGL--------------RYFN 489
           ++L    R  S   + ++           ACS HG  V  G+                 N
Sbjct: 300 ELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLN 359

Query: 490 LMISDYHILPDSEHYTCLT--------DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            +    H+  +S   T +            G     +  +  +      P + T+   + 
Sbjct: 360 EIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILS 419

Query: 542 ACKVHGSIGLAKWAAE--KLLELEPSKPVNYALVSNVYA 578
           AC   GS+   KW     K   LEP+  V+ ALV ++YA
Sbjct: 420 ACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALV-DMYA 457


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/572 (34%), Positives = 312/572 (54%), Gaps = 2/572 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G LQ+G QLHS++ K G+ +   ++  +L +YVKC   +    +F+    
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR 307

Query: 127 RNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N+V WN ++   G IN        F +M    +R +  T+  +LR C    +I++G ++
Sbjct: 308 TNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI 367

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS  +K GF  + +VS  L+D+Y K G++E ARRV + +  +D+V W  M++ Y  +   
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+A F  M+  G+  D    +S ++ C  + + + G QIH  +    +  DV +  +L
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNAL 487

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V++YA+ G I +A   F+ +  K+ ++WN +V GF Q+G   EA+K+   M Q     + 
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T  S LS+  +L+   + +Q+HA  IK G      + NALI+ Y KCGS   A   F  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + E + V+W +II + + HG   E++++F++M    ++P+ + F+ VL+ACSH GLV EG
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L YF  M  +Y I P  +HY C+ D+ GR G L  A   +  MPI   +      + ACK
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH +I + ++AA+ LLELEP    +Y L+SN YA    W +  ++RKMMRD    K PG 
Sbjct: 728 VHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGR 787

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           SWIE+   +H F   DR HP A  +Y  L  +
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVI 819



 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 257/484 (53%), Gaps = 6/484 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K     QG+ +H+   K G C+++ + N V+ +Y++C +F   E++F +M  
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ VT+NTLISG   C  G +    F  M    +  D +T +SLL AC    D++ G +L
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCL 243
           HS++ K G   +  +  +L+DLY KCG VE A  +F+     ++VLWN+M+  +  +N L
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL 326

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M+  G++ + FT+  ++ +C       LG QIH L +K  F+ D+ V+  
Sbjct: 327 AK-SFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K G ++ A RV + +  K+VVSW +M+ G+ Q+   ++A+   ++M +    PD
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + LAS +S C  ++   +  Q+HA    +G    +SI NAL+N Y++CG I  A   F 
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++  D +TW  ++  +A  GL +E+++VF +M    V+ +   F+  LSA ++   + +
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +    +I   H   ++E    L  L G+ G   +A    + M  E    +    I +C
Sbjct: 566 GKQIHARVIKTGHSF-ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623

Query: 544 KVHG 547
             HG
Sbjct: 624 SQHG 627



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 5/441 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN-- 141
           ++H+  +  GL     + N ++ +Y K        ++F+E+  R+ V+W  ++SG     
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            G      +R+M    V       +S+L +C +A+    GR +H+   K GF    FV +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           A++ LY +CG    A RVF ++  RD V +N ++S +A    G+ A+ +F  M+  G+  
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T SSL+ +C +LG  + G Q+H  + K     D ++  SL+D+Y K G+++ A  +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +     NVV WN M+V FGQ  D  ++ +L   M      P++ T   IL +C       
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+ ++K G ++ + +   LI+ YSK G +  A +    +KE D+V+WTS+I  Y 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   K+++  F++M    + PD+I     +S C+    + +GL+ +  + +S Y    D
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS--GD 480

Query: 501 SEHYTCLTDLLGRVGLLVEAY 521
              +  L +L  R G + EA+
Sbjct: 481 VSIWNALVNLYARCGRIREAF 501



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 1/318 (0%)

Query: 160 LDHITFNSLLRACV-QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           L  + F   LRAC       +V   +H+  +  G G    V + L+DLY K G V  ARR
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARR 98

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+E+  RD V W  M+S YA N LG+ A+ ++  M   G+    +  SS+++SC     
Sbjct: 99  VFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR IH    K  F  ++ V  +++ +Y + G+   A RVF  M  ++ V++NT++ G
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISG 218

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q G G  A+++  +M      PD VT++S+L++C SL    +  Q+H+Y  K G+ + 
Sbjct: 219 HAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSD 278

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             +E +L++ Y KCG +  AL  F S    ++V W  ++ A+       +S E+F +M +
Sbjct: 279 YIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQA 338

Query: 459 HAVRPDSIAFLEVLSACS 476
             +RP+   +  +L  C+
Sbjct: 339 AGIRPNQFTYPCILRTCT 356



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 6/203 (2%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H+  +F S AL  SA    ++QGKQ+H+ ++K G   +  + N ++ +Y KC +F+D + 
Sbjct: 545 HNVFTFVS-ALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADD 177
            F EM  RN V+WNT+I+     G  +     F +M  + ++ + +TF  +L AC     
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 178 IEVG-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
           +E G     S   + G        + ++D++G+ G ++ A++  +E+ +  D ++W  ++
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 236 S-CYALNCLGDGAIAVFNLMRLE 257
           S C     +  G  A  +L+ LE
Sbjct: 724 SACKVHKNIEVGEFAAKHLLELE 746


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 311/558 (55%), Gaps = 4/558 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G+QLH++  KLG  +   ++  +L++Y KC   +     F E  V N+V WN ++
Sbjct: 386 GTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVML 445

Query: 137 --SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              G+++   N    FR+M ++ +  +  T+ S+L+ C++  D+E+G ++HS I+K  F 
Sbjct: 446 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQ 505

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           LN +V S L+D+Y K G ++ A  +      +D+V W  M++ Y      D A+  F  M
Sbjct: 506 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 565

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G++ D    ++ V++C  L + K G+QIH       F  D+    +LV +Y+K GNI
Sbjct: 566 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNI 625

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           ++A   F+   A + ++WN +V GF Q+G+  EA+++   M +     +  T  S + + 
Sbjct: 626 EEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAA 685

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
              +   + +QVHA   K G  +   + NA+I+ Y+KCGSI+ A + F  +   + V+W 
Sbjct: 686 SETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWN 745

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++I AY+ HG   E+++ F++M+   VRP+ +  + VLSACSH GLV +G+ YF  M ++
Sbjct: 746 AMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTE 805

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y + P  EHY C+ D+L R GLL  A D +  MPIEP +      + AC VH ++ + ++
Sbjct: 806 YGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEF 865

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA  LLELEP     Y L+SN+YA  R W      R+ M++    K PG SWIE+   IH
Sbjct: 866 AAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 925

Query: 615 TFVSSDRSHPQA--VHMY 630
           +F   D++HP A  +H Y
Sbjct: 926 SFYVGDQNHPLADEIHEY 943



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 150/486 (30%), Positives = 245/486 (50%), Gaps = 8/486 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L    K   L+ G+QLH  ++KLG  +   + N ++ +Y    +    E +F  M 
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS 333

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ VT+NTLI+G+  C  G      F+RM LD +  D  T  SL+ AC     +  G++
Sbjct: 334 QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ 393

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH++  K+GF  N  +  AL++LY KC  +E A   F E    ++VLWNVM+  Y L   
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M++E +  + +T+ S++ +C  LG  +LG QIH  +IK SF L+  V + 
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSV 513

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G +D A  +      K+VVSW TM+ G+ Q     +A+   R ML      D
Sbjct: 514 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 573

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           EV L + +S+C  L    E +Q+HA A  +G  + L  +NAL+  YSKCG+I  A   F 
Sbjct: 574 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFE 633

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             +  D + W +++  +   G ++E++ VF +M    +  ++  F   + A S    + +
Sbjct: 634 QTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQ 693

Query: 484 GLRYFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           G +   ++    +   DSE   C  +  +  + G + +A      + ++    +  A I 
Sbjct: 694 GKQVHAVITKTGY---DSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEV-SWNAMIN 749

Query: 542 ACKVHG 547
           A   HG
Sbjct: 750 AYSKHG 755



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 236/453 (52%), Gaps = 8/453 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +G++LHS I+KLG  N   L  ++L  Y+     D   K+FDEM  R I TWN +I
Sbjct: 82  GSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMI 141

Query: 137 SGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGF 193
             + +    G V   F RM+ +NV  +  TF+ +L AC       +V  ++H+ I+  G 
Sbjct: 142 KELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGL 201

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
           G +  V + L+DLY + GFV+ ARRVFD +  +D   W  M+S  + N     AI +F  
Sbjct: 202 GKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD 261

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G+    + FSS++++C  + S ++G Q+HGLV+K  F  D  V  +LV +Y   G+
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGS 321

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A  +F  M+ ++ V++NT++ G  Q G G +A++L + M      PD  TLAS++ +
Sbjct: 322 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVA 381

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S       +Q+HAY  K G  +   IE AL+N Y+KC  I  AL  F   +  ++V W
Sbjct: 382 CSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLW 441

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             ++ AY      + S  +F +M    + P+   +  +L  C   G +  G +  + +I 
Sbjct: 442 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 501

Query: 494 DYHILPDSEHYTC--LTDLLGRVGLLVEAYDLL 524
               L     Y C  L D+  ++G L  A+D+L
Sbjct: 502 TSFQL---NAYVCSVLIDMYAKLGKLDTAWDIL 531



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 35/327 (10%)

Query: 258 GMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           G++ ++ T   L+  C  T GS   GR++H  ++K  FD +  ++  L+D Y   G++D 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  + + +WN M+          +   L   M+  +  P+E T + +L +C  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 377 LSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            S++ +   Q+HA  I  G+     + N LI+ YS+ G +  A + F  +   D  +W +
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEG 484
           +I   + +    E+I +F  M    + P   AF  VLSAC            HG ++  G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 485 LR------------YFNL--MISDYHILP-----DSEHYTCLTDLLGRVGLLVEAYDLLA 525
                         YF+L  +IS  HI       D+  Y  L + L + G   +A +L  
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 526 SMP---IEPRSDTLGAFIGACKVHGSI 549
            M    +EP S+TL + + AC   G++
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTL 388



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E   S +  +  A+K +++   ++QGKQ+H+ I K G  ++  + N ++ +Y KC +  D
Sbjct: 669 EGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISD 728

Query: 117 MEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
            +K F E+ ++N V+WN +I+       G      F +M+  NVR +H+T   +L AC  
Sbjct: 729 AKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 788

Query: 175 ADDIEVG-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWN 232
              ++ G     S   + G          +VD+  + G +  A+    E+ +  D ++W 
Sbjct: 789 IGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWR 848

Query: 233 VMVS-CYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
            ++S C     +  G  A  +L+ LE      Y   S+L   C    +  L RQ
Sbjct: 849 TLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQ 902


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 324/569 (56%), Gaps = 3/569 (0%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H      +  ++   + G +++G QLH  +++ G    + +   ++  Y K    ++   
Sbjct: 148 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARL 207

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FD++  +  VTW T+I+G   CG +      F +M   NV  D    +S+L AC   + 
Sbjct: 208 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 267

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +E G+++H+++L+ G  ++  V + L+D Y KC  V+  R++FD+++ ++++ W  M+S 
Sbjct: 268 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y  N     A+ +F  M   G K D F  +S++ SCG+  + + GRQ+H   IK + + D
Sbjct: 328 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 387

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             V   L+DMYAK+  + DA +VFD M  +NV+S+N M+ G+       EA++L  +M  
Sbjct: 388 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 447

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P+E T A+++++  +L+     +Q H   +K G+     + NAL++ Y+KCGSI  
Sbjct: 448 RLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEE 507

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + F S    D+V W S+I  +A HG ++E++ +F +M+   ++P+ + F+ VLSACSH
Sbjct: 508 ARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSH 567

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            G V +GL +FN M   + I P +EHY C+  LLGR G L EA + +  MPIEP +    
Sbjct: 568 AGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWR 626

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           + + AC++ G++ L K+AAE  +  +P    +Y L+SN++AS+  W DV ++R  M  + 
Sbjct: 627 SLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSE 686

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
             K PG SWIE+  +++ F++ D +H +A
Sbjct: 687 VVKEPGRSWIEVNNKVNVFIARDTTHREA 715



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 223/413 (53%), Gaps = 3/413 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K +H  I+  GL +   L N +++V  K    D+   +FD+M  +N++TW++++S     
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 143 GGNVTPYFRRMLLDNVRLDH---ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           G +       + L     +H       S++RAC Q   +E G +LH F+++ GF  + +V
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+D Y K G +E+AR VFD++  +  V W  +++ Y        ++ +F  MR   +
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D +  SS++++C  L   + G+QIH  V+++  ++DV V   L+D Y K   +    +
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  KN++SW TM+ G+ QN    EA+KL  +M +  + PD     S+L+SCGS   
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + RQVHAY IK  +++   ++N LI+ Y+K   +  A + F  + E +++++ ++I  
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           Y+      E++E+F +M     +P+   F  +++A S+   +  G ++ N ++
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLV 481



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 216/406 (53%), Gaps = 9/406 (2%)

Query: 132 WNTLISGIINCGGNVTPYFRR----MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + T      N   +V+P F      + + N+R     F +LL+  +  + I   + +H  
Sbjct: 15  YRTTKKQAFNFSTSVSPQFLLQNPCLQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQ 74

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I+  G   + F+++ L+++  K   V++AR VFD++  ++L+ W+ MVS Y+     + A
Sbjct: 75  IIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEA 134

Query: 248 IAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           + VF +L R  G   + F  +S++ +C  LG  + G Q+HG V++  FD DV V TSL+D
Sbjct: 135 LMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLID 194

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            Y+KNGNI++A  VFD ++ K  V+W T++ G+ + G    +++L   M + +  PD   
Sbjct: 195 FYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYV 254

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           ++S+LS+C  L      +Q+HAY ++ G +  +S+ N LI+ Y+KC  +    + F  + 
Sbjct: 255 VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 314

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++++WT++I  Y  +    E++++F +M     +PD  A   VL++C     + +G R
Sbjct: 315 VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQG-R 373

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA---YDLLASMPI 529
             +      ++  D      L D+  +  LL++A   +D++A   +
Sbjct: 374 QVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 419


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 325/573 (56%), Gaps = 5/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L++      ++ G  +H+ I+  G  +   +   +L++Y K +  +D  K+F+ M 
Sbjct: 174 YSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT 233

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+V+WN +I+G  +    +  +  F RM+ + V  D  TF  + +A     D+   + 
Sbjct: 234 EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE 293

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYALN 241
           +  + L++G   N  V +AL+D+  KCG +++AR +F+   + CR    WN M+S Y  +
Sbjct: 294 VSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLV 300
              + A+ +F  M    +  D++T+ S+ N+   L    LG+++H   IK   +++ V +
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           + ++ + YAK G+++D  +VF+ M  ++++SW ++V  + Q  +  +A+++  +M     
Sbjct: 414 SNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGI 473

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P++ T +S+L SC +L +    +QVH    K G+     IE+AL++ Y+KCG +  A +
Sbjct: 474 APNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKK 533

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D V+WT+II  +A HG+  +++++F +M+   V P+++ FL VL ACSHGGL
Sbjct: 534 VFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGL 593

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EGL+YF LM   Y ++P+ EHY C+ DLL RVG L +A + ++ MP+EP        +
Sbjct: 594 VEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL 653

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC+VHG++ L + AA+K+L  +      Y L+SN Y     + D   LR +M++    K
Sbjct: 654 GACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKK 713

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PGCSWI + G +H F + D+ HP+   +YA L
Sbjct: 714 EPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKL 746



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 260/499 (52%), Gaps = 15/499 (3%)

Query: 78  FLQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           FL+Q K +H  ++K    N   L L N V H Y KC   D   +LFD+M  RN  +W  L
Sbjct: 83  FLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVL 142

Query: 136 ISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I+G+   G  +    +F  M    +  D   ++ +L+ C+  D IE+G  +H+ I+  GF
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGF 202

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + FVS+AL+++Y K   +ED+ +VF+ +   ++V WN M++ +  N L   A  +F  
Sbjct: 203 TSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLR 262

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  EG+  D  TF  +  + G L      +++ G  ++   D + LV T+L+DM +K G+
Sbjct: 263 MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 322

Query: 314 IDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           + +A  +F+   +T +    WN M+ G+ ++G   +A++L   M Q     D  T  S+ 
Sbjct: 323 LQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVF 382

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           ++  +L      ++VHA AIK+G++  ++SI NA+ NAY+KCGS+    + F  +++ DL
Sbjct: 383 NAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL 442

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           ++WTS++ AY+      ++IE+F  M +  + P+   F  VL +C++  L+  G +   +
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGI 502

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHGS 548
            I    +  D    + L D+  + G L +A  +   +     +DT+   A I     HG 
Sbjct: 503 -ICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI---SNADTVSWTAIIAGHAQHGI 558

Query: 549 IGLAKWAAEKLLEL--EPS 565
           +  A     ++++L  EP+
Sbjct: 559 VDDALQLFRRMVQLGVEPN 577



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 159/311 (51%), Gaps = 4/311 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFG--LNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           LLR CV A  ++  + +H F+LK  F    +  + + +   Y KC  ++ A R+FD++  
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R+   W V+++  A N L       F  M+ +G+  D F +S ++  C  L S +LG  +
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  ++ + F     V+T+L++MYAK   I+D+ +VF+ MT  NVVSWN M+ GF  N   
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLY 253

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            +A  L   M+     PD  T   +  + G L    + ++V  YA++ GV +   +  AL
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 406 INAYSKCGSIAGALQCFGS--VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           I+  SKCGS+  A   F S  +       W ++I  Y   G +++++E+F KM  + +  
Sbjct: 314 IDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL 373

Query: 464 DSIAFLEVLSA 474
           D   +  V +A
Sbjct: 374 DHYTYCSVFNA 384


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 320/575 (55%), Gaps = 3/575 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A  G ++ G+ +H  + KLG  ++ ++ N ++  Y K     D   +FD M  R++
Sbjct: 203 LKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDV 262

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WN++ISG  + G        F RM L+   LD  T  S+L AC +   + +GR +H +
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGY 322

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K GF     +++ L+D+Y  C       ++F  ++ +++V W  M++ Y    L D  
Sbjct: 323 SVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKV 382

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             +F  M LEG + D F  +S +++       K G+ +HG  I+   +  + V  +L++M
Sbjct: 383 AGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEM 442

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K GN+++A  +FDG+ +K+++SWNT++ G+ +N    EA  L  +ML     P+ VT+
Sbjct: 443 YVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL-QLRPNAVTM 501

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
             IL +  SLS     R++HAYA++ G      + NALI+ Y KCG++  A + F  +  
Sbjct: 502 TCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSN 561

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            +L++WT ++  Y  HG  +++I +FE+M    + PD+ +F  +L ACSH GL  EG R+
Sbjct: 562 KNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRF 621

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F+ M  ++ I P  +HYTC+ DLL   G L EAY+ + SMPIEP S    + +  C++H 
Sbjct: 622 FDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHR 681

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ LA+  AE++ ELEP     Y L++N+YA    W  V +L+  +      +  GCSWI
Sbjct: 682 NVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWI 741

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           E  G++H F++ +R+HPQ   +   L  V   M+E
Sbjct: 742 EAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQE 776



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 136/420 (32%), Positives = 219/420 (52%), Gaps = 13/420 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLH-----SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           Y   L++ ++   L+ GK+ H     S + + G+ N L  Q  VL +Y+KC   ++  ++
Sbjct: 94  YGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLG-QKLVL-MYLKCGDLENARRV 151

Query: 121 FDEM-RVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           FDEM +V ++  W  L+SG    G        FR+M    VR D  T + +L+       
Sbjct: 152 FDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGS 211

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           IE G  +H  + K+GFG  C V +AL+  Y K    +DA  VFD +  RD++ WN M+S 
Sbjct: 212 IEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISG 271

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
              N L D AI +F  M LEG + D  T  S++ +C  L    LGR +HG  +K  F   
Sbjct: 272 CTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQ 331

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-L 356
             +A  L+DMY+   +     ++F  M  KNVVSW  M+  + + G   +   L ++M L
Sbjct: 332 TSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGL 391

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +G+  PD   + S L +     +    + VH YAI+NG++  L++ NAL+  Y KCG++ 
Sbjct: 392 EGTR-PDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNME 450

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  V   D+++W ++IG Y+ + L+ E+  +F +ML   +RP+++    +L A +
Sbjct: 451 EAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAA 509



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL-SISCETRQ---VHAYAI-KNGV 395
           ++GD  EA+ LL     GS   D+ +  ++L  C  + S+    R    V A ++ ++G+
Sbjct: 73  RSGDLEEALGLL-----GSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGM 127

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFE 454
              L     L+  Y KCG +  A + F  + +  D+  WT+++  YA  G  +E + +F 
Sbjct: 128 DNVLG--QKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFR 185

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           KM    VRPD+     VL   +  G + +G
Sbjct: 186 KMHCCGVRPDAYTISCVLKCIAGLGSIEDG 215


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/625 (34%), Positives = 346/625 (55%), Gaps = 30/625 (4%)

Query: 45  LSSQLRNSGTIHESTHSAHS-FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           LS  L+   +I     SA    Y+  L+   K      G Q+H+H++K GL     + N 
Sbjct: 99  LSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNS 158

Query: 104 VLHVYVKCKA-FDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRL 160
           +L +Y K    F +  K+FD + V+++++W ++ISG +  G   N    F +ML   V  
Sbjct: 159 LLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEP 218

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +  T +++++AC +  D+++GR  H  +L  GF  N  ++SAL+D++G+   ++DAR++F
Sbjct: 219 NAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLF 278

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           DE+L  D + W  ++S    N   D A+  F ++ R  GM  D FTF +++ +CG LG  
Sbjct: 279 DELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRL 338

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           K G+++H  VI   F  +V+V +SLVDMY K G++ ++ R+FD M  KN VSW+ ++ G+
Sbjct: 339 KQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGY 398

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QNGD +  +++ R M +     D     +IL +C  L+   + ++VH   I+ G    +
Sbjct: 399 CQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDV 454

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +E+AL++ Y+KCG I  A   F  +   +L+TW S+IG +A +G  +E++ +F +M+  
Sbjct: 455 IVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKE 514

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD I+F+ +L ACSH GLV EG  YF  M  DY I    EHY+C+ DLLGR GLL E
Sbjct: 515 GIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEE 574

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A  L+ +      S    A +GAC    +  +A+  A++++ELEP   ++Y L++NVY +
Sbjct: 575 AEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKA 634

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W D  R+R++M+D   +K+PG SWIE    + +  S D                   
Sbjct: 635 VGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGS--SFD------------------- 673

Query: 640 MEENNVSGHCNVLDKEMDECTLWLP 664
            E + V G  N LD E  +   +LP
Sbjct: 674 FENSLVPGESNFLDVEELQMARYLP 698


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/676 (31%), Positives = 348/676 (51%), Gaps = 99/676 (14%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           ++  F++  L+ S +      G+ +H  I+K GL   + L N ++  Y K  +      +
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHV 67

Query: 121 FDEMRVRNIVTWNTLISGIINCGG---------------------------------NVT 147
           FDEM +++  +WNTLISG    G                                  N  
Sbjct: 68  FDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAI 127

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
             F +M+ + V     T +++L +C     +++GR++HSF++K+G G    V+++L+++Y
Sbjct: 128 WMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMY 187

Query: 208 GKCGFVEDARRVFDEVLC-------------------------------RDLVLWNVMVS 236
            KCG    A+ VFD +                                 RD+V WN M+S
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 237 CYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK---- 291
            Y+       A+ +F+ M  E  +K D FT +S++++C  L    +G+QIH  +++    
Sbjct: 248 GYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 292 -----------------------------QSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
                                        ++ +L+++  TSL+D Y K GN+  A  +F+
Sbjct: 308 TSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +  ++VV+W  M+VG+ QNG   +A++L R M+     P+  TLA++LS   SL+I   
Sbjct: 368 KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYA 441
            +Q+HA AIK G  +  S+ NALI  Y+K G+I  A + F     + ++V+WTS+I A A
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HGL KE+I +FE+MLS  ++PD I ++ VLSAC+H GLV +G +Y+N+M   + I P  
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
            HY C+ DL GR GLL EAY  + SMPIEP +   G+ + +CK+H +  LAK AAE+LL 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           ++P     Y  ++NVY++   W + A+ RK+M+D    K  G SWI I  E+H F   D 
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 622 SHPQAVHMYAMLCTVF 637
            HPQ   +Y ++  ++
Sbjct: 668 IHPQKDEIYKLMAEIW 683


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 319/567 (56%), Gaps = 34/567 (5%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           +F+ +   N   WNT+I G  N    +  +  F  M    V +D  +F   L+AC Q + 
Sbjct: 213 IFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFET 272

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +  G  ++  + K+GF     V + L+  Y + G +++AR+VFDE   +D+V W  M+  
Sbjct: 273 VFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDG 332

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV-------- 289
           YA +   + A+ VF LM L  ++ +  T  ++V++C  +G+ ++G+++H  V        
Sbjct: 333 YAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCS 392

Query: 290 -------------------IKQSFDL----DVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
                               ++ FD     DV   TS+V+ YAK G+++ A R FD    
Sbjct: 393 LSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPR 452

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           KN V W+ M+ G+ QN   +E++KL  +M++    P E TL S+LS+CG L+       +
Sbjct: 453 KNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWI 512

Query: 387 HAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           H Y +   +    +++ENA+++ Y+KCGSI  A + F ++ E +L++W ++I  YA +G 
Sbjct: 513 HQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGR 572

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
           +K++I VF++M +    P++I F+ +L+ACSHGGL+SEG  YF+ M   Y I P+  HY 
Sbjct: 573 AKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYA 632

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
           C+ DLLGR GLL EAY L+A+MP++P     GA + AC++HG++ LA+ +A  LL L+P 
Sbjct: 633 CMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPE 692

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
               Y L++N  A++R W DV R+R +M+D    K+PG S IEI G    F+ +D SHPQ
Sbjct: 693 DSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQ 752

Query: 626 AVHMYAMLCTVFGLMEENNVSGHCNVL 652
           +  +Y + C      +   VSG C ++
Sbjct: 753 SEEIYKLECDNLSSKKLTWVSGGCKLI 779



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 202/412 (49%), Gaps = 36/412 (8%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK   +F  + +G+ ++  + K+G   +L ++N ++H Y +     +  ++FDE   ++
Sbjct: 263 ALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322

Query: 129 IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR--- 183
           +VTW T+I G    +C       F  MLL +V  + +T  +++ AC    ++E+G+R   
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHE 382

Query: 184 ------------LHSFILKVGFGLNCFVS----------------SALVDLYGKCGFVED 215
                       LH+ +L +    +C V                 +++V+ Y KCG +E 
Sbjct: 383 KVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLES 442

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           ARR FD+   ++ V W+ M++ Y+ N     ++ +F+ M   G+     T  S++++CG 
Sbjct: 443 ARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQ 502

Query: 276 LGSSKLGRQIHG-LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           L    LG  IH   V+ +   L V +  ++VDMYAK G+ID A  VF  M  +N++SWNT
Sbjct: 503 LTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNT 562

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKN 393
           M+ G+  NG  ++A+ +   M    F P+ +T  S+L++C    +  E R+       K 
Sbjct: 563 MIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKY 622

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           G++        +++   + G +  A +   ++  +P    W +++ A   HG
Sbjct: 623 GIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHG 674



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 6/261 (2%)

Query: 269 LVNSCGTLGSSKL--GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           ++ SC T+   K    R     +I  +F +  ++A   +   A +G++  A  +F+ +  
Sbjct: 163 IMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCAL---AHSGDLHYAHTIFNRVEQ 219

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            N   WNTM+ G+        A      M Q     D  +    L +C       E   V
Sbjct: 220 PNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESV 279

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           +    K G    L + N LI+ Y++ G +  A Q F    + D+VTWT++I  YA H  S
Sbjct: 280 YCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCS 339

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           +E++EVFE ML   V P+ +  + V+SACS  G +  G R     + + ++      +  
Sbjct: 340 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHE-KVEEKNMRCSLSLHNA 398

Query: 507 LTDLLGRVGLLVEAYDLLASM 527
           L D+  +   LV+A +L   M
Sbjct: 399 LLDMYVKCDCLVDARELFDRM 419


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 325/573 (56%), Gaps = 5/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L++      ++ G  +H+ I+  G  +   +   +L++Y K +  +D  K+F+ M 
Sbjct: 174 YSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT 233

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+V+WN +I+G  +    +  +  F RM+ + V  D  TF  + +A     D+   + 
Sbjct: 234 EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE 293

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYALN 241
           +  + L++G   N  V +AL+D+  KCG +++AR +F+   + CR    WN M+S Y  +
Sbjct: 294 VSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLV 300
              + A+ +F  M    +  D++T+ S+ N+   L    LG+++H   IK   +++ V +
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           + ++ + YAK G+++D  +VF+ M  ++++SW ++V  + Q  +  +A+++  +M     
Sbjct: 414 SNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGI 473

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P++ T +S+L SC +L +    +QVH    K G+     IE+AL++ Y+KCG +  A +
Sbjct: 474 APNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKK 533

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D V+WT+II  +A HG+  +++++F +M+   V P+++ FL VL ACSHGGL
Sbjct: 534 VFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGL 593

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EGL+YF LM   Y ++P+ EHY C+ DLL RVG L +A + ++ MP+EP        +
Sbjct: 594 VEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL 653

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC+VHG++ L + AA+K+L  +      Y L+SN Y     + D   LR +M++    K
Sbjct: 654 GACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKK 713

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PGCSWI + G +H F + D+ HP+   +YA L
Sbjct: 714 EPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKL 746



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 260/499 (52%), Gaps = 15/499 (3%)

Query: 78  FLQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           FL+Q K +H  ++K    N   L L N V H Y KC   D   +LFD+M  RN  +W  L
Sbjct: 83  FLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVL 142

Query: 136 ISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I+G+   G  +    +F  M    +  D   ++ +L+ C+  D IE+G  +H+ I+  GF
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGF 202

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + FVS+AL+++Y K   +ED+ +VF+ +   ++V WN M++ +  N L   A  +F  
Sbjct: 203 TSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLR 262

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  EG+  D  TF  +  + G L      +++ G  ++   D + LV T+L+DM +K G+
Sbjct: 263 MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 322

Query: 314 IDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           + +A  +F+   +T +    WN M+ G+ ++G   +A++L   M Q     D  T  S+ 
Sbjct: 323 LQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVF 382

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           ++  +L      ++VHA AIK+G++  ++SI NA+ NAY+KCGS+    + F  +++ DL
Sbjct: 383 NAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL 442

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           ++WTS++ AY+      ++IE+F  M +  + P+   F  VL +C++  L+  G +   +
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGI 502

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHGS 548
            I    +  D    + L D+  + G L +A  +   +     +DT+   A I     HG 
Sbjct: 503 -ICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI---SNADTVSWTAIIAGHAQHGI 558

Query: 549 IGLAKWAAEKLLEL--EPS 565
           +  A     ++++L  EP+
Sbjct: 559 VDDALQLFRRMVQLGVEPN 577



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 159/311 (51%), Gaps = 4/311 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFG--LNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           LLR CV A  ++  + +H F+LK  F    +  + + +   Y KC  ++ A R+FD++  
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R+   W V+++  A N L       F  M+ +G+  D F +S ++  C  L S +LG  +
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  ++ + F     V+T+L++MYAK   I+D+ +VF+ MT  NVVSWN M+ GF  N   
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLY 253

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            +A  L   M+     PD  T   +  + G L    + ++V  YA++ GV +   +  AL
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 406 INAYSKCGSIAGALQCFGS--VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           I+  SKCGS+  A   F S  +       W ++I  Y   G +++++E+F KM  + +  
Sbjct: 314 IDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL 373

Query: 464 DSIAFLEVLSA 474
           D   +  V +A
Sbjct: 374 DHYTYCSVFNA 384


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 322/602 (53%), Gaps = 9/602 (1%)

Query: 36  NAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC 95
           N Q++D  ++  Q+  SG   +        +   +K     G +  G+QLH H++K G  
Sbjct: 236 NGQENDAIIMYIQMLQSGYFPDPLT-----FGSIIKACCIAGDIDLGRQLHGHVIKSGYD 290

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRM 153
           + L  QN ++ +Y +         +F  +  +++++W ++I+G    G  +     FR M
Sbjct: 291 HHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDM 350

Query: 154 LLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
                 + +   F S+  AC    + E GR++H    K G G N F   +L D+Y K GF
Sbjct: 351 FRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGF 410

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +  A R F ++   DLV WN +++ ++ +   + AI  F  M   G+  D  TF SL+ +
Sbjct: 411 LPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCA 470

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVS 331
           CG+  +   G QIH  +IK   D +  V  SL+ MY K  N+ DA  VF  ++   N+VS
Sbjct: 471 CGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVS 530

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN ++    Q+    E  +L + ML     PD +T+ +IL +C  L+      QVH +++
Sbjct: 531 WNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSV 590

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           K+G+   +S+ N LI+ Y+KCGS+  A   FGS + PD+V+W+S+I  YA  GL  E++ 
Sbjct: 591 KSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALN 650

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F  M +  V+P+ + +L VLSACSH GLV EG  ++N M  +  I P  EH +C+ DLL
Sbjct: 651 LFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLL 710

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
            R G L EA + +  M   P        + +CK HG++ +A+ AAE +L+L+PS      
Sbjct: 711 ARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALV 770

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           L+SN++AS   W +VARLR +M+     KVPG SWI +  +IH F S D SH Q   +Y 
Sbjct: 771 LLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIYT 830

Query: 632 ML 633
           ML
Sbjct: 831 ML 832



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 153/508 (30%), Positives = 251/508 (49%), Gaps = 13/508 (2%)

Query: 26  LYQNQTTTITNAQKHDRSVLSS---QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQG 82
           L  N    +   Q+H R  L +     +NS    ES     S Y   +        L+ G
Sbjct: 122 LSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLES-----STYGNLILACTSIRSLKYG 176

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K++H HI+K      L LQN +L++Y KC +  D  K FD M++RN+V+W  +ISG    
Sbjct: 177 KKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQN 236

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G   +    + +ML      D +TF S+++AC  A DI++GR+LH  ++K G+  +    
Sbjct: 237 GQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQ 296

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM- 259
           +AL+ +Y + G +  A  VF  +  +DL+ W  M++ +        A+ +F  M  +G  
Sbjct: 297 NALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFY 356

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + + F F S+ ++C +L   + GRQIHG+  K     +V    SL DMYAK G +  A R
Sbjct: 357 QPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIR 416

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
            F  + + ++VSWN ++  F  +GD  EA+     M+     PD +T  S+L +CGS   
Sbjct: 417 AFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVT 476

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIG 438
             +  Q+H+Y IK G+    ++ N+L+  Y+KC ++  A   F  V E  +LV+W +I+ 
Sbjct: 477 INQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILS 536

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A   H  + E   +F+ ML    +PD+I    +L  C+    +  G +     +    ++
Sbjct: 537 ACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVV 596

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            D      L D+  + G L  A D+  S
Sbjct: 597 -DVSVSNRLIDMYAKCGSLKHARDVFGS 623



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 222/421 (52%), Gaps = 7/421 (1%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           +++L+  T+ +L+ AC     ++ G+++H  ILK     +  + + ++++YGKCG ++DA
Sbjct: 152 SIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDA 211

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R+ FD +  R++V W +M+S Y+ N   + AI ++  M   G   D  TF S++ +C   
Sbjct: 212 RKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIA 271

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G   LGRQ+HG VIK  +D  ++   +L+ MY + G I  A  VF  ++ K+++SW +M+
Sbjct: 272 GDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMI 331

Query: 337 VGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
            GF Q G   EA+ L RDM  QG + P+E    S+ S+C SL      RQ+H    K G+
Sbjct: 332 TGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGL 391

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              +    +L + Y+K G +  A++ F  ++ PDLV+W +II A++  G   E+I  F +
Sbjct: 392 GRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQ 451

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC--LTDLLGR 513
           M+   + PD I FL +L AC     +++G +  + +I    I  D E   C  L  +  +
Sbjct: 452 MMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIK---IGLDKEAAVCNSLLTMYTK 508

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
              L +A+++   +       +  A + AC  H   G   +   KL+    +KP N  + 
Sbjct: 509 CSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEV-FRLFKLMLFSENKPDNITIT 567

Query: 574 S 574
           +
Sbjct: 568 T 568


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 306/547 (55%), Gaps = 5/547 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  ++     +G++LH  I+K+G  +   L   V  +Y KC+  +D  ++FDE+ 
Sbjct: 141 FSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLV-DMYAKCREVEDSRRVFDEIL 199

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V W ++I G +  +C       F RM    V  +  T  SL+ AC +   +  G+ 
Sbjct: 200 DRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKW 259

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +++K GF LN F+ + L+DLY KCG + DA  VFDE+   DLV W  M+  YA    
Sbjct: 260 VHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGY 319

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F   R + +  +  T SS++++C   GS  +GR +H L IK   + D     +
Sbjct: 320 PREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSE-DATFENA 378

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMYAK   I DA  VF+ +  K+V++WN+++ G+ QNG   EA++L   M   S  PD
Sbjct: 379 LVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPD 438

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGV-QAFLSIENALINAYSKCGSIAGALQCF 422
            +TL S+LS+C S+        +H YAIK G+    + +  AL+N Y+KCG    A   F
Sbjct: 439 AITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIF 498

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + E + +TW+++IG Y   G    S+E+F  ML   + P+ + F  +LSACSH G++ 
Sbjct: 499 DEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLG 558

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG RYFN M   Y+ +P  +HY C+ DLL R G L EA D +  +PI+P    LGAF+  
Sbjct: 559 EGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHG 618

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H    L + A  ++LEL P K   Y L+SN+YASE  W    ++ ++M+     K+P
Sbjct: 619 CRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLP 678

Query: 603 GCSWIEI 609
           G S ++I
Sbjct: 679 GWSLVDI 685



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 237/404 (58%), Gaps = 13/404 (3%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140
           +++H+ ++  GL   L  + +++ +Y      +    +FD +R  ++ +W  +I      
Sbjct: 56  RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLN 115

Query: 141 NCGGNVTPYFRRMLLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           +    +  ++   L   +   D++ F+ +L+AC +  + + GR+LH  I+KVG   + FV
Sbjct: 116 DSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFV 174

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-CLGDGAIAVFNLMRLEG 258
            + LVD+Y KC  VED+RRVFDE+L R++V W  M+  Y  N CL +G + +FN MR   
Sbjct: 175 LTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEG-LVLFNRMREGL 233

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++G+ +T  SLV +C  LG+   G+ +HG VIK  FDL+  + T L+D+Y K G+I DA 
Sbjct: 234 VEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAF 293

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---G 375
            VFD ++  ++VSW  M+VG+ Q G  REA+KL  D       P+ VT +S+LS+C   G
Sbjct: 294 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTG 353

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           SL++    R VH   IK G +   + ENAL++ Y+KC  I  A   F +V + D++ W S
Sbjct: 354 SLNMG---RSVHCLGIKLGSED-ATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNS 409

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           II  Y  +G + E++E+F++M S +V PD+I  + VLSAC+  G
Sbjct: 410 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVG 453



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 166/320 (51%), Gaps = 7/320 (2%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           SLL  C     +   R++H+ ++  G   +    + LV LYG  G VE AR +FD +   
Sbjct: 44  SLLGICKTVSSL---RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP 100

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY--FTFSSLVNSCGTLGSSKLGRQ 284
           DL  W VM+  Y LN      +  +N  RL     +Y    FS ++ +C  L  +  GR+
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYN-TRLRKCLNEYDNVVFSIVLKACSELRETDEGRK 159

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H  ++K     D  V T LVDMYAK   ++D+ RVFD +  +NVV W +M+VG+ QN  
Sbjct: 160 LHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDC 218

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            +E + L   M +G    ++ TL S++++C  L    + + VH Y IK+G      +   
Sbjct: 219 LKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTP 278

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y KCG I  A   F  +   DLV+WT++I  YA  G  +E++++F       + P+
Sbjct: 279 LLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPN 338

Query: 465 SIAFLEVLSACSHGGLVSEG 484
           ++    VLSAC+  G ++ G
Sbjct: 339 TVTTSSVLSACAQTGSLNMG 358


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 321/588 (54%), Gaps = 17/588 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+   L+ G QLH  I K+G  +   L N ++ +YVKC   D   ++F  MR RN+
Sbjct: 11  LRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNV 70

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRL------DHITFNSLLRACVQADDIEVGRR 183
           V+W  L+ G +  G + T   R  LL  +R       +  T ++ L+AC    D   G  
Sbjct: 71  VSWTALMVGFLRHG-DATGCLR--LLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVG 127

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNC 242
           +H   ++ G+  +  V+S+LV +Y K G + DARRVFD   L   +  WN MVS YA   
Sbjct: 128 IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAG 187

Query: 243 LGDGAIAVFNLMRL-EGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DV 298
            G  A+ VF  MR  EG  + D FTF+SL+ +C  LG+++ G Q+H  +    F    + 
Sbjct: 188 HGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 247

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           ++A +LVDMY K   +  A +VF+ +  KNV+ W  +VVG  Q G   EA++L R   + 
Sbjct: 248 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 307

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD   L+S++      ++  + RQVH Y IK+     +S  N++++ Y KCG    A
Sbjct: 308 GARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEA 367

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  ++ P++V+WT+++     HGL +E++ +FE+M +  V PD + +L +LSACSH 
Sbjct: 368 ERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHA 427

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLV E  RYF+ +  D  + P +EHY C+ DLLGR G L EA DL+ +MP+EP       
Sbjct: 428 GLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQT 487

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            + AC+VH  + + + A + LL ++   PVNY  +SNV A    W +  ++R  MR    
Sbjct: 488 LLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGL 547

Query: 599 HKVPGCSWIEIAGEIHTFVSS---DRSHPQAVHMYAMLCTVFGLMEEN 643
            K  GCSW+E+  E+H F      + +HPQA  +  +L  +   M E 
Sbjct: 548 KKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQ 595



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 222/474 (46%), Gaps = 21/474 (4%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
            LLRA  ++  +  G +LH  I K+GFG +  + + L+D+Y KCG ++ A  VF  +  R
Sbjct: 9   GLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDR 68

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQI 285
           ++V W  ++  +  +    G + +   MR       + +T S+ + +C  +G +  G  I
Sbjct: 69  NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGI 128

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD 344
           HGL ++  +    +VA+SLV +Y+K G I DA RVFDG      + +WN MV G+   G 
Sbjct: 129 HGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGH 188

Query: 345 GREAVKLLRDML--QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS-- 400
           GR+A+ + R+M   +G   PDE T AS+L +C  L  + E  QVHA    +G     +  
Sbjct: 189 GRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAI 248

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  AL++ Y KC  +  A+Q F  ++  +++ WT+++  +A  G   E++E+F +     
Sbjct: 249 LAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSG 308

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            RPDS     V+   +   LV +G +     I D     D      + D+  + GL  EA
Sbjct: 309 ARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKD-PTGTDVSAGNSIVDMYLKCGLPDEA 367

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL-----EPSKPVNYALVS- 574
             +   M    R+  + ++       G  GL + A     E+     EP +    AL+S 
Sbjct: 368 ERMFREM----RAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSA 423

Query: 575 ----NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
                +    R +F   R  + +R   +H       +  AGE+       R+ P
Sbjct: 424 CSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMP 477



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
            + L+ +     S + G Q+HG + K  F  D ++  +L+DMY K G +D AC VF GM 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLASILSSCGSLSISCETR 384
            +NVVSW  ++VGF ++GD    ++LL +M   S   P+E TL++ L +C  +  +    
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFH 443
            +H   ++ G Q    + ++L+  YSK G I  A + F G+     + TW +++  YA  
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 444 GLSKESIEVFEKMLSHAV--RPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           G  ++++ VF +M  H    +PD   F  +L ACS  G   EG +    M +
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTA 238



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 6/214 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  + V A F  ++QG+Q+H + +K      +S  N ++ +Y+KC   D+ E++F EMR 
Sbjct: 317 SSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRA 376

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N+V+W T+++G+     G      F  M    V  D +T+ +LL AC  A  ++  RR 
Sbjct: 377 PNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRY 436

Query: 185 HSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS-CYALN 241
            S I +           + +VDL G+ G + +AR +   +     V +W  ++S C    
Sbjct: 437 FSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHK 496

Query: 242 CLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCG 274
            +  G  A   L+ ++G    +Y T S+++   G
Sbjct: 497 DVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAG 530


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 320/572 (55%), Gaps = 12/572 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G+Q+H  +++ G    +   N ++ +Y K    +    +F++M   ++V+WN  ISG
Sbjct: 221 LEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISG 280

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +        +M    +  +  T +S+L+AC  A    +GR++H F++K     +
Sbjct: 281 CVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFD 340

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AIAVFN 252
            FV+  LVD+Y K GF++DAR+VFD +  RDL+LWN ++S     C  DG     +++F+
Sbjct: 341 EFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALIS----GCSHDGRHGEVLSLFH 396

Query: 253 LMRLEGMKGDY--FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
            MR EG+  D    T +S++ S  +  +    RQ+H L  K     D  V   L+D Y K
Sbjct: 397 RMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWK 456

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G +D A +VF    + +++S  TM+    Q   G +A+KL   ML+    PD   L+S+
Sbjct: 457 CGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL 516

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L++C SLS   + +QVHA+ IK    + +   NAL+ AY+KCGSI  A   F  + E  +
Sbjct: 517 LNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGI 576

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+W+++IG  A HG  K ++++F +ML   V P+ I    VLSAC+H GLV +  +YF  
Sbjct: 577 VSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFES 636

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M   + I    EHY C+ D+LGR G L +A +L+ +MP +  +   GA +GA +VH    
Sbjct: 637 MKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPE 696

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           L + AAEKL  LEP K   + L++N YAS   W ++A++RK+M+D+   K P  SW+EI 
Sbjct: 697 LGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIK 756

Query: 611 GEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            ++HTF+  D+SHP    +Y  L  +  LM +
Sbjct: 757 DKVHTFIVGDKSHPMTRDIYGKLAELGDLMNK 788



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 200/392 (51%), Gaps = 14/392 (3%)

Query: 74  AKFGF---LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           A+FG    L  G  LHSH++K GL    S  N +L +Y +C+       +FDE+     V
Sbjct: 12  ARFGTSRSLFAGAHLHSHLLKSGLLAGFS--NHLLTLYSRCRLPSAARAVFDEIPDPCHV 69

Query: 131 TWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           +W++L++   N G   +    FR M    V  +      +L+    A D+  G ++H+  
Sbjct: 70  SWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKC---APDVRFGAQVHALA 126

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC----RDLVLWNVMVSCYALNCLG 244
           +      + FV++ALV +YG  G V++ARR+FDE +     R+ V WN M+S Y  N   
Sbjct: 127 VATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQS 186

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             AI VF  M   G + + F FS +VN+C      + GRQ+HG V++  ++ DV  A +L
Sbjct: 187 GDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANAL 246

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           VDMY+K G+I+ A  VF+ M A +VVSWN  + G   +G    A++LL  M      P+ 
Sbjct: 247 VDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNV 306

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            TL+S+L +C         RQ+H + +K        +   L++ Y+K G +  A + F  
Sbjct: 307 FTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDF 366

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           +   DL+ W ++I   +  G   E + +F +M
Sbjct: 367 MPRRDLILWNALISGCSHDGRHGEVLSLFHRM 398



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 158/328 (48%), Gaps = 10/328 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  LK +A    +   +Q+H+   K+GL +   + N ++  Y KC   D   K+F E R 
Sbjct: 413 ASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRS 472

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +I++  T+++ +  C  G +    F +ML   +  D    +SLL AC      E G+++
Sbjct: 473 DDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQV 532

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++K  F  + F  +ALV  Y KCG +EDA   F  +  R +V W+ M+   A +  G
Sbjct: 533 HAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHG 592

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--T 302
             A+ +F+ M  EG+  ++ T +S++++C   G     ++ +   +K++F +D       
Sbjct: 593 KRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKK-YFESMKETFGIDRTEEHYA 651

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLRDMLQG 358
            ++D+  + G ++DA  + + M  + N   W  ++     + D   GR A + L   L+ 
Sbjct: 652 CMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLF-TLEP 710

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQV 386
                 V LA+  +S G      + R++
Sbjct: 711 EKSGTHVLLANTYASAGMWDEMAKVRKL 738


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 327/568 (57%), Gaps = 3/568 (0%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           F++ G  +H  ++K      + + N ++ +Y KC   +D  ++F+ M  R+ V+WNTL+S
Sbjct: 263 FVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLS 322

Query: 138 GIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G++      +   YFR M     + D ++  +L+ A  ++ ++  G+ +H++ ++ G   
Sbjct: 323 GLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDS 382

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N  + + LVD+Y KC  V+     F+ +  +DL+ W  +++ YA N     AI +F  ++
Sbjct: 383 NMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQ 442

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           ++GM  D     S++ +C  L S    R+IHG V K+    D+++  ++V++Y + G+ID
Sbjct: 443 VKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHID 501

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A R F+ + +K++VSW +M+     NG   EA++L   + Q +  PD + + S LS+  
Sbjct: 502 YARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATA 561

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +LS   + +++H + I+ G      I ++L++ Y+ CG++  + + F SVK+ DL+ WTS
Sbjct: 562 NLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTS 621

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I A   HG   ++I +F+KM    V PD I FL +L ACSH GL+ EG R+F +M   Y
Sbjct: 622 MINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGY 681

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            + P  EHY C+ DLL R   L EAY  + +MPI+P S+   A +GAC +H +  L + A
Sbjct: 682 QLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELA 741

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A++LL+ +      YAL+SN++A++  W DV  +R  M+ N   K PGCSWIE+  +IHT
Sbjct: 742 AKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHT 801

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           F++ D+SHPQ   +Y  L     L+E+ 
Sbjct: 802 FMARDKSHPQTDDIYLKLAQFTKLLEKK 829



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 270/514 (52%), Gaps = 28/514 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG+QLH+ ++K  L   L+   +++ +Y KC +  D  K+FDEM  R I +WN L+  
Sbjct: 62  LPQGQQLHALLLKSHLSAFLA--TKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGA 119

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G        ++ M +  V +D  TF S+L+AC    +  +G  +H   +K G+G  
Sbjct: 120 FVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEF 179

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYAL--NCLGDGAIAVFN 252
            FV +AL+ +YGKCG +  AR +FD ++    D V WN ++S +    NCL   A+++F 
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLE--ALSLFR 237

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+  G+  + +TF + +         KLG  IHG V+K +   DV VA +L+ MYAK G
Sbjct: 238 RMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCG 297

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            ++DA RVF+ M  ++ VSWNT++ G  QN    +A+   RDM      PD+V++ ++++
Sbjct: 298 RMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIA 357

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           + G      + ++VHAYAI+NG+ + + I N L++ Y+KC  +      F  + E DL++
Sbjct: 358 ASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLIS 417

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           WT+II  YA +    E+I +F K+    +  D +    VL ACS  GL S   R F   I
Sbjct: 418 WTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREI 472

Query: 493 SDY---HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG--ACKVHG 547
             Y     L D      + ++ G VG +  A     S+    RS  + ++     C VH 
Sbjct: 473 HGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESI----RSKDIVSWTSMITCCVHN 528

Query: 548 SIGLAKWAAEKLLELEPS--KPVNYALVSNVYAS 579
             GL   A E    L+ +  +P + A++S + A+
Sbjct: 529 --GLPVEALELFYSLKQTNIQPDSIAIISALSAT 560



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL  +A    L++GK++H  +++ G   +  + + ++ +Y  C   ++  K+F  ++ R+
Sbjct: 556 ALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRD 615

Query: 129 IVTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           ++ W ++I  +G+  CG      F++M   NV  DHITF +LL AC  +  +  G+R   
Sbjct: 616 LILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFE 675

Query: 187 FILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
            I+K G+ L  +    + +VDL  +   +E+A
Sbjct: 676 -IMKYGYQLEPWPEHYACMVDLLSRSNSLEEA 706


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/555 (34%), Positives = 328/555 (59%), Gaps = 4/555 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G ++H +++KLG  +     N +L +Y K    +    +F E+   +IV+WN +I+G + 
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              N        +M    V     T +S L+AC     +++GR+LHS ++K+    + FV
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFV 326

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD-GAIAVFNLMRLEG 258
              L+D+Y KCG ++DAR VFD +  +D+++WN ++S Y+ NC  D  A+++F  M  EG
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYS-NCGYDIEAMSLFTNMYKEG 385

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++ +  T S+++ S     ++    Q+H + IK  +  D  VA SL+D Y K   ++DA 
Sbjct: 386 LEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAA 445

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +VF+   A+++V++ +M+  + Q G G EA+K+   M      PD    +S+ ++C +LS
Sbjct: 446 KVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLS 505

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + +Q+H + +K G+ + +   N+L+N Y+KCGSI  A   F  +    +V+W+++IG
Sbjct: 506 AYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIG 565

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
             A HG  ++++++F +ML + + P+ I  + VLSAC+H GLV+E  R+F LM   + I 
Sbjct: 566 GLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGIT 625

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY C+ D+LGRVG L EA  L+  MP +  +   GA +GA ++H +I L + AAE 
Sbjct: 626 PTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEM 685

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           LL LEP K   + L++N+YAS   W +VA++R+ M+++   K PG SWIE+  +++TF+ 
Sbjct: 686 LLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIV 745

Query: 619 SDRSHPQAVHMYAML 633
            DRSHP++  +Y  L
Sbjct: 746 GDRSHPRSKEIYVKL 760



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 212/422 (50%), Gaps = 42/422 (9%)

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDH 162
           +++Y KC+ F    KL  +    ++V+W+ LISG +  G        +  M L   + + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 163 ITFNSLLRACVQADDIEVGR---------------------------------------- 182
            TF+S+L+ C    ++E+G+                                        
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H +++K+G+  + F ++AL+D+Y K G  E A  VF E+   D+V WN +++   L+ 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             D A+ +   M    +    FT SS + +C  +G  KLGRQ+H  ++K   + D  V  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            L+DMY+K G + DA  VFD M  K+V+ WN+++ G+   G   EA+ L  +M +     
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++ TL++IL S      +    QVH  +IK+G Q    + N+L+++Y KC  +  A + F
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
                 DLV +TS+I AY+ +GL +E+++++ +M    ++PD+  F  + +AC++     
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYE 508

Query: 483 EG 484
           +G
Sbjct: 509 QG 510



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 190/441 (43%), Gaps = 52/441 (11%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +  LL     + D+  G  +H+ I+++       + + LV+LY KC     AR++  +  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
             DLV W+ ++S Y  N  G+ A+  +  M L G KG+ FTFSS++  C    + +LG+Q
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 285 IH----------------------------------------GLVIKQSFDLDVLVATSL 304
           IH                                        G +IK  +D D   A +L
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK+G  + A  VF  +   ++VSWN ++ G   +     A+KLL  M      P  
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            TL+S L +C ++ +    RQ+H+  +K  ++    +   LI+ YSKCG +  A   F  
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL--SACSHGGLVS 482
           +   D++ W SII  Y+  G   E++ +F  M    +  +      +L  +A S      
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           E +   ++  S Y    D      L D  G+  LL +A  +    P E     L A+   
Sbjct: 410 EQVHTISIK-SGYQY--DGYVANSLLDSYGKCCLLEDAAKVFEVCPAE----DLVAYTSM 462

Query: 543 CKVHGSIGLAKWAAEKLLELE 563
              +   GL + A +  L ++
Sbjct: 463 ITAYSQYGLGEEALKMYLRMQ 483



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            +S      A     +QGKQ+H H++K GL + +   N ++++Y KC + DD   +F+E+
Sbjct: 493 IFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEI 552

Query: 125 RVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R IV+W+ +I G+     G      F +ML + +  +HIT  S+L AC  A  +   R
Sbjct: 553 SWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEAR 612

Query: 183 RLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV 223
           R    + K+ FG+       + +VD+ G+ G +++A  +  E+
Sbjct: 613 RFFGLMEKL-FGITPTQEHYACMVDILGRVGRLDEAMVLVKEM 654


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 329/583 (56%), Gaps = 3/583 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+  +Q+H+ I+  GL +   L N +++ YV C    D +++F     +N+V+W  LISG
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISG 96

Query: 139 II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   +C       FR M++ N + + +T +S+L A      I + + +H F ++ GF  N
Sbjct: 97  LAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGN 156

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV +ALVD+Y K G +  AR++F+ +  R++V WN +VS Y+ +   + AI +FNLMR 
Sbjct: 157 VFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRR 216

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           +G+  D++T  SL+ +  ++G  ++G  IHG +I+  ++ D  + T+L+D+Y  +  +DD
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDD 276

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCG 375
           A RVF  M+ K+V +W  M+ GF        A+K    ML   +   D + L  ILSSC 
Sbjct: 277 AHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCS 336

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                 + R+VHA AIK      + + +A+I+ Y+ CG++  A + F  + E D+V W +
Sbjct: 337 HSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNA 396

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I     +G   ++I++F +M    + PD   F+ VL ACSH G+V EGL+ F  M+   
Sbjct: 397 MIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTS 456

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
           H++P+ +HY C+ D+LGR G L  AY  + +MP +P  D     +GAC++HG+I L    
Sbjct: 457 HVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEI 516

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           ++K+ E+EP+    Y L+SN+YA    W  V   R  +R     K PG S IEI  EI+T
Sbjct: 517 SQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYT 576

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           F++ ++ HPQ   +  +L  +   +++     + NVL +++ +
Sbjct: 577 FMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSD 619



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 209/412 (50%), Gaps = 7/412 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G ++  K +H   ++ G    + ++  ++ +Y K        +LF+ M  
Sbjct: 126 SSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSE 185

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+VTWN ++SG  + G        F  M    + +D  T  SL+ A +    ++VG  +
Sbjct: 186 RNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGI 245

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H FI++ G+  +  + +AL+D+Y     V+DA RVF E+  +D+  W +M++ ++     
Sbjct: 246 HGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHW 305

Query: 245 DGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           D AI  FN ++ ++ +K D      +++SC   G+ + GR++H L IK  F  ++ V ++
Sbjct: 306 DRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSA 365

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMYA  GN++DA R F GM  K+VV WN M+ G G NG G +A+ L   M      PD
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPD 425

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCF 422
           E T  S+L +C    +  E  Q+  + +K   V   L     +I+   + G +  A    
Sbjct: 426 ESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFI 485

Query: 423 GSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            ++  +PD   +++++GA   HG  K   E+ +K+    + P+   +  +LS
Sbjct: 486 NNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFE--MEPNDAGYYVLLS 535



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 178/329 (54%), Gaps = 8/329 (2%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+LR   +  D++  +++H+ I+  G   N F+S++L++ Y  CG + DA+++F     +
Sbjct: 29  SILR---KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYK 85

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W +++S  A N     AI VF  M +   K +  T SS++ +   LG  ++ + +H
Sbjct: 86  NVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVH 145

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              ++  F+ +V V T+LVDMY+K G +  A ++F+ M+ +NVV+WN +V G+  +G   
Sbjct: 146 CFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSE 205

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET--RQVHAYAIKNGVQAFLSIENA 404
           EA+ L   M +     D  T+ S++ +  SLS+ C      +H + I+ G +    I+ A
Sbjct: 206 EAIDLFNLMRRKGLLVDFYTIMSLIPA--SLSVGCLQVGTGIHGFIIRTGYENDKHIKTA 263

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRP 463
           L++ Y     +  A + F  +   D+  WT ++  ++       +I+ F KML    ++ 
Sbjct: 264 LMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKL 323

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           DSIA + +LS+CSH G + +G R   L I
Sbjct: 324 DSIALMGILSSCSHSGALQQGRRVHALAI 352


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 328/572 (57%), Gaps = 8/572 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A    ++ G Q+H+ I+K G      + N ++ +Y+K +   D E +FD M 
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VR+ VTWN +I G    G  +  +  F RM L  V+L    F + L+ C Q  ++   ++
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNC 242
           LH  ++K G+     + +AL+  Y KC  V++A ++F       ++V W  M+  +  N 
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ +F  M  EG++ ++FT+S+++        S L  Q+H  +IK  ++    VAT
Sbjct: 388 NNEKAVDLFCQMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVAT 443

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+D Y K GN+ ++ RVF  + AK++V+W+ M+ G  Q  D  +A+++   +++    P
Sbjct: 444 ALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKP 503

Query: 363 DEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           +E T +S++++C S + + E  +Q+HA A+K+G    L + +AL+  YSK G+I  A + 
Sbjct: 504 NEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKV 563

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F   +E D+V+W S+I  Y  HG +K+++EVF+ M +  +  D + F+ VL+AC+H GLV
Sbjct: 564 FTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLV 623

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG +YFN+MI DYHI    EHY+C+ DL  R G+  +A D++  MP           + 
Sbjct: 624 EEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLA 683

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC+VH ++ L K AAEKL+ L+P+  V Y L+SN++A    W + A +RK+M +    K 
Sbjct: 684 ACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKE 743

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            GCSWIEI   I +F++ D SHP +  +YA L
Sbjct: 744 AGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKL 775



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 216/405 (53%), Gaps = 7/405 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q+H   +K G    +S+   ++ +Y+K + F+D   +FDEM ++N+V+W +L+SG   
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N  V     +M ++ V  +  TF ++L A      IE G ++H+ I+K GF    FV
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+ +Y K   V DA  VFD ++ RD V WN+M+  YA          +F+ MRL G+
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K     F + +  C         +Q+H  V+K  ++    + T+L+  Y+K  ++D+A +
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFK 362

Query: 320 VFD-GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +F     A NVV+W  M+ GF QN +  +AV L   M +    P+  T +++L+   S  
Sbjct: 363 LFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSL 422

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +S    Q+HA  IK   +   S+  AL++AY K G++  + + F S+   D+V W++++ 
Sbjct: 423 LS----QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLT 478

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             A    S++++EVF +++   V+P+   F  V++ACS      E
Sbjct: 479 GLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVE 523



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 224/465 (48%), Gaps = 14/465 (3%)

Query: 119 KLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           +LFDE  +++I  +N L+      N        F+ +    + +D +T +  L+ C    
Sbjct: 59  QLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLF 118

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D  VGR++H   LK GF  +  V ++LVD+Y K    ED R +FDE+  +++V W  ++S
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA N L D  I + N M++EG+  + FTF++++ +       + G Q+H +++K  F+ 
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF 238

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
              V  +L+ MY K+  + DA  VFD M  ++ V+WN M+ G+   G   E  ++   M 
Sbjct: 239 TTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMR 298

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                       + L  C        T+Q+H   +KNG +    I  AL+  YSKC S+ 
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358

Query: 417 GALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            A + F       ++VTWT++IG +  +  +++++++F +M    VRP+   +  VL A 
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVL-AG 417

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
               L+S+   +  ++ + Y  +P     T L D   + G +VE+  +  S+P +     
Sbjct: 418 KPSSLLSQ--LHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAKDIVAW 473

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLEL--EPSKPVNYALVSNVYA 578
                G  +   S    + A E  ++L  E  KP  Y   S + A
Sbjct: 474 SAMLTGLAQTRDS----EKAMEVFIQLVKEGVKPNEYTFSSVINA 514



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 204/388 (52%), Gaps = 10/388 (2%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + + +  ALK+ ++   L   KQLH  ++K G      ++  ++  Y KC + D+  KLF
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLF 364

Query: 122 DEM-RVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
                  N+VTW  +I G +    N      F +M  + VR +H T++++L     +   
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSS--- 421

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +  +LH+ I+K  +     V++AL+D Y K G V ++ RVF  +  +D+V W+ M++  
Sbjct: 422 -LLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL 480

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLD 297
           A     + A+ VF  +  EG+K + +TFSS++N+C +  ++ + G+QIH   +K      
Sbjct: 481 AQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNA 540

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + V+++L+ MY+K GNI+ A +VF     +++VSWN+M+ G+GQ+GD ++A+++ + M  
Sbjct: 541 LCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQN 600

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIA 416
                D+VT   +L++C    +  E  +     IK+  +   +   + +++ YS+ G   
Sbjct: 601 QGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFD 660

Query: 417 GALQCFGSVKEPDLVT-WTSIIGAYAFH 443
            A+     +  P   T W +++ A   H
Sbjct: 661 KAMDIINGMPFPASPTIWRTLLAACRVH 688



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A ++FDE   +D+  +N ++  ++ N     A+ +F  +   G+  D  T S  +  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L    +GRQ+H   +K  F  DV V TSLVDMY K  + +D   +FD M  KNVVSW ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ +NG   E + L+  M      P+  T A++L +    SI     QVHA  +KNG 
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +    + NALI  Y K   +  A   F S+   D VTW  +IG YA  G   E  ++F +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 456 MLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY 487
           M    V+     F   L  CS           H G+V  G  +
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 89/178 (50%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++FD    K++  +N ++  F +N   REA+ L +D+       D +TL+  L  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      RQVH  ++K+G    +S+  +L++ Y K          F  +   ++V+WTS+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +  YA +GL+ E I +  +M    V P+   F  VL A +   ++  G++   +++ +
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           ++F S     S+    ++ GKQ+H+  +K G  N L + + +L +Y K    +  EK+F 
Sbjct: 506 YTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFT 565

Query: 123 EMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
               R+IV+WN++I+G    G        F+ M    + LD +TF  +L AC  A  +E 
Sbjct: 566 RQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEE 625

Query: 181 GRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVS 236
           G +  + ++K  + ++  +   S +VDLY + G  + A  + + +       +W  ++ +
Sbjct: 626 GEKYFNIMIK-DYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAA 684

Query: 237 CYALNCLGDGAIAVFNLMRLE 257
           C     L  G +A   L+ L+
Sbjct: 685 CRVHRNLELGKLAAEKLVSLQ 705


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 327/572 (57%), Gaps = 8/572 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A    ++ G Q+H+ I+K G      + N ++ +Y+K +   D E +FD M 
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VR+ VTWN +I G    G  +  +  F RM L  V+L    F + L+ C Q  ++   ++
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNC 242
           LH  ++K G+     + +AL+  Y KC  V++A ++F       ++V W  M+  +  N 
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F  M  EG++ ++FT+S+++        S L  Q+H  +IK  ++    VAT
Sbjct: 388 NNKKAVDLFCQMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVAT 443

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+D Y K GN+ ++ RVF  + AK++V+W+ M+ G  Q  D  +A+++   +++    P
Sbjct: 444 ALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKP 503

Query: 363 DEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           +E T +S++++C S + + E  +Q+HA A+K+G    L + +AL+  YSK G+I  A + 
Sbjct: 504 NEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKV 563

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F   +E D+V+W S+I  Y  HG +K+++EVF+ M +  +  D + F+ VL+AC+H GLV
Sbjct: 564 FTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLV 623

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG +YFN+MI DYHI    EHY+C+ DL  R G+  +A D++  MP           + 
Sbjct: 624 EEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLA 683

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC+VH ++ L K AAEKL+ L+P+  V Y L+SN++A    W + A +RK+M +    K 
Sbjct: 684 ACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKE 743

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            GCSWIEI   I +F++ D SHP +  +YA L
Sbjct: 744 AGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKL 775



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 217/405 (53%), Gaps = 7/405 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q+H   +K G    +S+   ++ +Y+K + F+D   +FDEM ++N+V+W +L+SG   
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G N  V     +M ++ V  +  TF ++L A      IE G ++H+ I+K GF    FV
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+ +Y K   V DA  VFD ++ RD V WN+M+  YA          +F+ MRL G+
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K     F + +  C         +Q+H  V+K  ++    + T+L+  Y+K  ++D+A +
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFK 362

Query: 320 VFD-GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +F     A NVV+W  M+ GF QN + ++AV L   M +    P+  T +++L+   S  
Sbjct: 363 LFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSL 422

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +S    Q+HA  IK   +   S+  AL++AY K G++  + + F S+   D+V W++++ 
Sbjct: 423 LS----QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLT 478

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             A    S++++EVF +++   V+P+   F  V++ACS      E
Sbjct: 479 GLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVE 523



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 224/465 (48%), Gaps = 14/465 (3%)

Query: 119 KLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           +LFDE  +++I  +N L+      N        F+ +    + +D +T +  L+ C    
Sbjct: 59  QLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLF 118

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D  VGR++H   LK GF  +  V ++LVD+Y K    ED R +FDE+  +++V W  ++S
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA N L D  I + N M++EG+  + FTF++++ +       + G Q+H +++K  F+ 
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF 238

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
              V  +L+ MY K+  + DA  VFD M  ++ V+WN M+ G+   G   E  ++   M 
Sbjct: 239 TTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMR 298

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                       + L  C        T+Q+H   +KNG +    I  AL+  YSKC S+ 
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358

Query: 417 GALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            A + F       ++VTWT++IG +  +  +K+++++F +M    VRP+   +  VL A 
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVL-AG 417

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
               L+S+   +  ++ + Y  +P     T L D   + G +VE+  +  S+P +     
Sbjct: 418 KPSSLLSQ--LHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAKDIVAW 473

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLEL--EPSKPVNYALVSNVYA 578
                G  +   S    + A E  ++L  E  KP  Y   S + A
Sbjct: 474 SAMLTGLAQTRDS----EKAMEVFIQLVKEGVKPNEYTFSSVINA 514



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 203/388 (52%), Gaps = 10/388 (2%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + + +  ALK+ ++   L   KQLH  ++K G      ++  ++  Y KC + D+  KLF
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLF 364

Query: 122 DEM-RVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
                  N+VTW  +I G +    N      F +M  + VR +H T++++L     +   
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSS--- 421

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +  +LH+ I+K  +     V++AL+D Y K G V ++ RVF  +  +D+V W+ M++  
Sbjct: 422 -LLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL 480

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLD 297
           A     + A+ VF  +  EG+K + +TFSS++N+C +  ++ + G+QIH   +K      
Sbjct: 481 AQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNA 540

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + V+++L+ MY+K GNI+ A +VF     +++VSWN+M+ G+GQ+GD ++A+++ + M  
Sbjct: 541 LCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQN 600

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIA 416
                D+VT   +L++C    +  E  +     IK+  +       + +++ YS+ G   
Sbjct: 601 QGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFD 660

Query: 417 GALQCFGSVKEPDLVT-WTSIIGAYAFH 443
            A+     +  P   T W +++ A   H
Sbjct: 661 KAMDIINGMPFPASPTIWRTLLAACRVH 688



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A ++FDE   +D+  +N ++  ++ N     A+ +F  +   G+  D  T S  +  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L    +GRQ+H   +K  F  DV V TSLVDMY K  + +D   +FD M  KNVVSW ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ +NG   E + L+  M      P+  T A++L +    SI     QVHA  +KNG 
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +    + NALI  Y K   +  A   F S+   D VTW  +IG YA  G   E  ++F +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 456 MLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY 487
           M    V+     F   L  CS           H G+V  G  +
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 89/178 (50%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++FD    K++  +N ++  F +N   REA+ L +D+       D +TL+  L  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      RQVH  ++K+G    +S+  +L++ Y K          F  +   ++V+WTS+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +  YA +GL+ E I +  +M    V P+   F  VL A +   ++  G++   +++ +
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 7/201 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           ++F S     S+    ++ GKQ+H+  +K G  N L + + +L +Y K    +  EK+F 
Sbjct: 506 YTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFT 565

Query: 123 EMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
               R+IV+WN++I+G    G        F+ M    + LD +TF  +L AC  A  +E 
Sbjct: 566 RQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEE 625

Query: 181 GRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVS 236
           G +  + ++K  + ++      S +VDLY + G  + A  + + +       +W  ++ +
Sbjct: 626 GEKYFNIMIK-DYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAA 684

Query: 237 CYALNCLGDGAIAVFNLMRLE 257
           C     L  G +A   L+ L+
Sbjct: 685 CRVHRNLELGKLAAEKLVSLQ 705


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 313/548 (57%), Gaps = 4/548 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +K    +   + G  +H+  +  G  +   +QN ++ +Y+ C   +   ++FD MR
Sbjct: 126 YPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMR 185

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R +V+WNT+I+G     C       F  M+   +  D  T  S+L  C    ++EVGRR
Sbjct: 186 ERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR 245

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ +     G +  V ++L+D+Y KCG +++A+ +F E+  RD+V W  M++ Y LN  
Sbjct: 246 VHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGD 305

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +  +M+ E +K ++ T +S++++C +L S K GR +HG  I+Q  + +V+V T+
Sbjct: 306 ARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETA 365

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK  N++ + RVF   + +    WN ++ G   NG  R+A++L + ML  +  P+
Sbjct: 366 LIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPN 425

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           + TL S+L +   L+   + R +H Y I++G  + + +   LI+ YSKCGS+  A   F 
Sbjct: 426 DATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFN 485

Query: 424 SV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            +  K+ D++TW++II  Y  HG  + +I +F++M+   V+P+ I F  +L ACSH GLV
Sbjct: 486 GIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLV 545

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EGL  F  M+ D  +   ++HYTC+ DLLGR G L EAY+L+ +M   P     GA +G
Sbjct: 546 DEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLG 605

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           +C +H ++ L + AA+ L ELEP    NY L++N+Y++   W D   +R MM +    K 
Sbjct: 606 SCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKT 665

Query: 602 PGCSWIEI 609
           P  S IE+
Sbjct: 666 PAHSLIEV 673



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 163/516 (31%), Positives = 263/516 (50%), Gaps = 32/516 (6%)

Query: 52  SGTIHESTH--SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKL---SLQNQVLH 106
           S  + +S H  +A + Y   L+       +   KQ+H+H + LGL +      L + +  
Sbjct: 5   SQALSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAA 64

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL-DHI 163
            Y  C       KLFDE+R  ++ +WN +I    N G   +    F +ML    R  D+ 
Sbjct: 65  AYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNY 124

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  +++AC      E+G  +H+  +  GF  + FV ++L+ +Y  CG +E ARRVFD +
Sbjct: 125 TYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLM 184

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R LV WN M++ Y  N     A+ VF+ M  +G++ D  T  S++  C  L   ++GR
Sbjct: 185 RERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGR 244

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           ++H LV  ++   D+ V  SL+DMYAK GN+D+A  +F  M  ++VVSW TM+ G+  NG
Sbjct: 245 RVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNG 304

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           D R A+ L + M   S  P+ VTLAS+LS+C SL      R +H +AI+  +++ + +E 
Sbjct: 305 DARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVET 364

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALI+ Y+KC ++  + + F    +     W +II     +GLS+++IE+F++ML  AV P
Sbjct: 365 ALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDP 424

Query: 464 DSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           +      +L A +           HG L+  G             L   E  T L D+  
Sbjct: 425 NDATLNSLLPAYAFLTDLQQARNMHGYLIRSGF------------LSRIEVATILIDIYS 472

Query: 513 RVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHG 547
           + G L  A+++   +P + +   T  A I    +HG
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHG 508


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 313/548 (57%), Gaps = 4/548 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +K    +   + G  +H+  +  G  +   +QN ++ +Y+ C   +   ++FD MR
Sbjct: 126 YPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMR 185

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R +V+WNT+I+G     C       F  M+   +  D  T  S+L  C    ++EVGRR
Sbjct: 186 ERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR 245

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ +     G +  V ++L+D+Y KCG +++A+ +F E+  RD+V W  M++ Y LN  
Sbjct: 246 VHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGD 305

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +  +M+ E +K ++ T +S++++C +L S K GR +HG  I+Q  + +V+V T+
Sbjct: 306 ARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETA 365

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK  N++ + RVF   + +    WN ++ G   NG  R+A++L + ML  +  P+
Sbjct: 366 LIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPN 425

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           + TL S+L +   L+   + R +H Y I++G  + + +   LI+ YSKCGS+  A   F 
Sbjct: 426 DATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFN 485

Query: 424 SV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            +  K+ D++TW++II  Y  HG  + +I +F++M+   V+P+ I F  +L ACSH GLV
Sbjct: 486 GIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLV 545

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EGL  F  M+ D  +   ++HYTC+ DLLGR G L EAY+L+ +M   P     GA +G
Sbjct: 546 DEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLG 605

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           +C +H ++ L + AA+ L ELEP    NY L++N+Y++   W D   +R MM +    K 
Sbjct: 606 SCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKT 665

Query: 602 PGCSWIEI 609
           P  S IE+
Sbjct: 666 PAHSLIEV 673



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/516 (31%), Positives = 262/516 (50%), Gaps = 32/516 (6%)

Query: 52  SGTIHESTH--SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKL---SLQNQVLH 106
           S  + +S H  +A + Y   L+       +   KQ+H+H + LGL +      L + +  
Sbjct: 5   SQALSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAA 64

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL-DHI 163
            Y          KLFDE+R  ++ +WN +I    N G   +    F +ML    R  D+ 
Sbjct: 65  AYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNY 124

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  +++AC      E+G  +H+  +  GF  + FV ++L+ +Y  CG +E ARRVFD +
Sbjct: 125 TYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLM 184

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R LV WN M++ Y  N     A+ VF+ M  +G++ D  T  S++  C  L   ++GR
Sbjct: 185 RERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGR 244

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           ++H LV  ++   D+ V  SL+DMYAK GN+D+A  +F  M  ++VVSW TM+ G+  NG
Sbjct: 245 RVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNG 304

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           D R A+ L + M   S  P+ VTLAS+LS+C SL      R +H +AI+  +++ + +E 
Sbjct: 305 DARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVET 364

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALI+ Y+KC ++  + + F    +     W +II     +GLS+++IE+F++ML  AV P
Sbjct: 365 ALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDP 424

Query: 464 DSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           +      +L A +           HG L+  G             L   E  T L D+  
Sbjct: 425 NDATLNSLLPAYAFLTDLQQARNMHGYLIRSGF------------LSRIEVATILIDIYS 472

Query: 513 RVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHG 547
           + G L  A+++   +P + +   T  A I    +HG
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHG 508


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 322/567 (56%), Gaps = 4/567 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GK++H  + K+G  + + +   ++H+Y +    D   K+F +M V+++ +WN +ISG
Sbjct: 137 LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G          RM  + V++D IT  S+L  C Q+DD+  G  +H  +LK G   +
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FVS+AL+++Y K G ++DA+ VFD++  RDLV WN +++ Y  N     A+  F  M+L
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNID 315
            G++ D  T  SL +    L   ++ R I G VI++ + D DV++  +LV+MYAK G ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSC 374
            A  VFD +  K+ +SWNT+V G+ QNG   EA+     M +     P++ T  SI+ + 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             +    +  ++HA  IKN +   + +   LI+ Y KCG +  A+  F  +     V W 
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +II +   HG  +E++++F+ ML+  V+ D I F+ +LSACSH GLV EG + F++M  +
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I P  +HY C+ DLLGR G L +AY+L+ +MPI+P +   GA + ACK++G+  L   
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           A+++LLE++      Y L+SN+YA+   W  V ++R + RD    K PG S + +  +  
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLME 641
            F + +++HP+   +Y  L  +   M+
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMK 703



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 244/473 (51%), Gaps = 13/473 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K+LH+ ++  G    + L  +++++YV           FD +  +NI +WN++IS  +  
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 143 GGN------VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           G        V   F      ++R D  TF  +L+ACV   D   G+++H  + K+GF  +
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV+++LV LY + G ++ A +VF ++  +D+  WN M+S +  N    GA+ V N M+ 
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+K D  T +S++  C        G  IH  V+K   D DV V+ +L++MY+K G + D
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VFD M  +++VSWN+++  + QN D   A++  + M  G   PD +T+ S+ S    
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 377 LSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           LS    +R +  + I+   +   + I NAL+N Y+K G +  A   F  +   D ++W +
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 436 IIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++  Y  +GL+ E+I+ +  M       P+   ++ ++ A SH G + +G++    +I +
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
              L D    TCL DL G+ G L +A  L   +P +  S    A I +  +HG
Sbjct: 456 SLYL-DVFVATCLIDLYGKCGRLEDAMSLFYEIPRD-TSVPWNAIIASLGIHG 506



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 197/381 (51%), Gaps = 6/381 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A+   +  G  +H H++K GL + + + N ++++Y K     D + +FD+M VR++
Sbjct: 229 LPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL 288

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+     N       +F+ M L  +R D +T  SL     Q  D  + R +  F
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 188 ILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           +++  +   +  + +ALV++Y K G++  A  VFD++  +D + WN +V+ Y  N L   
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 247 AIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI  +N+M        +  T+ S++ +   +G+ + G +IH  +IK S  LDV VAT L+
Sbjct: 409 AIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLI 468

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K G ++DA  +F  +     V WN ++   G +G G EA++L +DML      D +
Sbjct: 469 DLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHI 528

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           T  S+LS+C    +  E ++      K  G++  L     +++   + G +  A +   +
Sbjct: 529 TFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRN 588

Query: 425 VK-EPDLVTWTSIIGAYAFHG 444
           +  +PD   W +++ A   +G
Sbjct: 589 MPIQPDASIWGALLSACKIYG 609



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 18/321 (5%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           FN+L  +CV   ++   ++LH+ +L  G   N  +S+ L++LY   G +  +R  FD + 
Sbjct: 25  FNALFNSCV---NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 225 CRDLVLWNVMVSCY--------ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
            +++  WN ++S Y        A+NC+      +F++     ++ D++TF  ++ +C +L
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQ----LFSMCGGGHLRPDFYTFPPILKACVSL 137

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                G+++H  V K  F+ DV VA SLV +Y++ G +D A +VF  M  K+V SWN M+
Sbjct: 138 VD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            GF QNG+   A+ +L  M       D +T+ASIL  C           +H + +K+G+ 
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD 254

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + + + NALIN YSK G +  A   F  ++  DLV+W SII AY  +     ++  F+ M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 457 LSHAVRPDSIAFLEVLSACSH 477
               +RPD +  + + S  S 
Sbjct: 315 QLGGIRPDLLTVVSLTSIFSQ 335



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F++L NSC  + ++K   ++H L++      +++++T L+++Y  +G+I  +   FD + 
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ----GSFCPDEVTLASILSSCGSLSISC 381
            KN+ SWN+++  + + G   EA+  +  +      G   PD  T   IL +C SL    
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL---V 138

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
           + ++VH    K G +  + +  +L++ YS+ G +  A + F  +   D+ +W ++I  + 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            +G +  ++ V  +M    V+ D+I    +L  C+    V  G+
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV 242


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/602 (32%), Positives = 336/602 (55%), Gaps = 12/602 (1%)

Query: 31  TTTITNAQKHDRSVLS----SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLH 86
           TT I    K  RS +S    +Q+R +  + +         S  L   +   FL+ GKQ+H
Sbjct: 107 TTIIAGYTKCGRSXVSLELFAQMRETNVVPD-----RYVVSSVLSACSMLEFLEGGKQIH 161

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN- 145
           +++++ G    +S+ N ++  Y KC       KLFD+M V+NI++W T+ISG +    + 
Sbjct: 162 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDW 221

Query: 146 -VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
                F  M     + D     S+L +C   + +E GR++H++ +K     N FV + L+
Sbjct: 222 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLI 281

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           D+Y K   + DA++VFD +  ++++ +N M+  Y+       A+ +F+ MR+        
Sbjct: 282 DMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL 341

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           TF SL+    +L + +L +QIHGL+IK    LD+   ++L+D+Y+K   + DA  VF+ M
Sbjct: 342 TFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 401

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             K++V WN M  G+ Q+ +  EA+KL   +      P+E T A+++++  +L+     +
Sbjct: 402 NEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQ 461

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q H   +K G+     + NAL++ Y+KCGSI  A + F S    D+V W S+I  +A HG
Sbjct: 462 QFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHG 521

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            ++E++ +F +M+   ++P+ + F+ VLSACSH G V +GL +FN M   + I P +EHY
Sbjct: 522 EAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHY 580

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+  LLGR G L EA + +  MPIEP +    + + AC++ G++ L K+AAE  +  +P
Sbjct: 581 ACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDP 640

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
               +Y L+SN++AS+  W DV ++R  M  +   K PG SWIE+  +++ F++   +H 
Sbjct: 641 KDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHR 700

Query: 625 QA 626
           +A
Sbjct: 701 EA 702



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 229/435 (52%), Gaps = 2/435 (0%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H      +  ++   + G +++G QLH  +++ G    + +   ++  Y K    +    
Sbjct: 34  HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARL 93

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FD++  +  VTW T+I+G   CG +      F +M   NV  D    +S+L AC   + 
Sbjct: 94  VFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 153

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +E G+++H+++L+ G  ++  V + L+D Y KC  V+  R++FD+++ ++++ W  M+S 
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y  N     A+ +F  M   G K D F  +S++ SCG+L + + GRQ+H   IK + + +
Sbjct: 214 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESN 273

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             V   L+DMYAK+  + DA +VFD M  +NV+S+N M+ G+       EA++L  +M  
Sbjct: 274 EFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 333

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
             F P  +T  S+L    SL     ++Q+H   IK GV   L   +ALI+ YSKC  +  
Sbjct: 334 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKD 393

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  + E D+V W ++   Y  H  ++E+++++  +     +P+   F  +++A S+
Sbjct: 394 ARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 453

Query: 478 GGLVSEGLRYFNLMI 492
              +  G ++ N ++
Sbjct: 454 LASLRHGQQFHNQLV 468



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 156/293 (53%), Gaps = 13/293 (4%)

Query: 245 DGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           + A+ VF +L R  G   + F  +S++ +C  LG  + G Q+HG V++  FD DV V TS
Sbjct: 18  EEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTS 77

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D Y+KNGBI+ A  VFD +  K  V+W T++ G+ + G    +++L   M + +  PD
Sbjct: 78  LIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPD 137

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
              ++S+LS+C  L      +Q+HAY ++ G +  +S+ N LI+ Y+KC  +    + F 
Sbjct: 138 RYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFD 197

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   ++++WT++I  Y  +    E++++F +M     +PD  A   VL++C     + +
Sbjct: 198 QMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQ 257

Query: 484 GLRYFNLMISDYHILPDSEH----YTCLTDLLGRVGLLVEA---YDLLASMPI 529
           G +     +  Y I  + E        L D+  +  LL +A   +D++A   +
Sbjct: 258 GRQ-----VHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNV 305


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 212/628 (33%), Positives = 338/628 (53%), Gaps = 50/628 (7%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---LFDEMRVRNIVTWNTL 135
            Q  KQ+HS I+K GL N     ++++  +     F ++     LF+ +   N   WNT+
Sbjct: 45  FQNLKQIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESIEQPNQFIWNTM 103

Query: 136 ISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G  + +       ++ RMLL  V  +  TF  LL++C +    + G+++H  +LK+G 
Sbjct: 104 IRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGL 163

Query: 194 GLNCFVSSALVDLY---GKCGFVE----------------------------DARRVFDE 222
             + FV ++L+++Y   G+ G+ E                            DARR+F+E
Sbjct: 164 ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEE 223

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  RD V WN M++ YA +   + A+A F  M+   +  +  T  +++++C   GS +LG
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
             +   +       ++ +  +L+DMY+K G++D A  +F+G+  K+++SWN M+ G+   
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
              +EA+ L R M Q +  P++VT  SIL +C  L      + +HAY  K     FL + 
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK----FLGLT 399

Query: 403 N-----ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           N     +LI+ Y+KCG+I  A Q F  +K   L +W ++I   A HG +  ++E+F +M 
Sbjct: 400 NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMR 459

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
                PD I F+ VLSACSH GLV  G + F+ M+ DY I P  +HY C+ DLLGR GL 
Sbjct: 460 DEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLF 519

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA  L+ +M ++P     G+ +GAC+VHG++ L ++AA+ L ELEP  P  Y L+SN+Y
Sbjct: 520 DEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIY 579

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A+   W DVAR+R  + D    KVPGCS IE+   +H F+  D+ H Q+  +Y ML  + 
Sbjct: 580 ATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEID 639

Query: 638 GLMEE-NNVSGHCNVL---DKEMDECTL 661
            L+E+  +V     VL   D+E  E +L
Sbjct: 640 QLLEKAGHVPDTSEVLYDMDEEWKEGSL 667



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 210/415 (50%), Gaps = 44/415 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF--------------- 114
           LK  AK G  Q+GKQ+H H++KLGL +   +   ++++Y +                   
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 115 ----------------DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
                           DD  +LF+E+ VR+ V+WN +I+G    G       +F+ M   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NV  +  T  ++L AC Q+  +E+G  + S+I   G G N  + +AL+D+Y KCG ++ A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R +F+ +  +D++ WNVM+  Y+       A+A+F  M+   ++ +  TF S++ +C  L
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 277 GSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           G+  LG+ IH  + K+   L +  + TSL+DMYAK GNI+ A +VF GM  K++ SWN M
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG-----SLSISCETRQVHAYA 390
           + G   +G    A++L R M    F PD++T   +LS+C       L   C +  V  Y 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           I   +Q +      +I+   + G    A     +++ +PD   W S++GA   HG
Sbjct: 499 ISPKLQHY----GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 212/423 (50%), Gaps = 45/423 (10%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL--YGKCGFVEDARRVFDEVL 224
           +LL  C    ++   +++HS I+K G     F  S L++       G +  A  +F+ + 
Sbjct: 37  TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
             +  +WN M+   +L+    GAI  +  M L G++ + +TF  L+ SC  +G+++ G+Q
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGN------------------------------- 313
           IHG V+K   + D  V TSL++MYA+NG                                
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +DDA R+F+ +  ++ VSWN M+ G+ Q+G   EA+   ++M + +  P+E T+ ++LS+
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 374 C---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           C   GSL +      V ++   +G+ + L + NALI+ YSKCG +  A   F  + E D+
Sbjct: 274 CAQSGSLELG---NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDI 330

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           ++W  +IG Y+     KE++ +F KM    V P+ + F+ +L AC++ G +  G      
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGSI 549
           +   +  L ++  +T L D+  + G +  A  + A M  +P+S  +  A I    +HG  
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM--KPKSLGSWNAMISGLAMHGHA 448

Query: 550 GLA 552
            +A
Sbjct: 449 NMA 451


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 331/592 (55%), Gaps = 9/592 (1%)

Query: 45  LSSQLRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           L S+L+  G      H  + F +S  LK+     + + G  +H+ + KLG  +   +   
Sbjct: 132 LFSRLQGEG------HELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTA 185

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLD 161
           ++  Y  C   +   ++FD +  +++V+W  +++  +   C       F RM +   + +
Sbjct: 186 LIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPN 245

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           + TF S+L+ACV  +   VG+ +H    K  +    FV   L+DLY K G V+DA +VF+
Sbjct: 246 NFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFE 305

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           E+   D++ W+ M++ YA +   + AI +F  MR   +  + FT +SL+ +C +L   +L
Sbjct: 306 EMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQL 365

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G QIH  V+K   D++V V+ +L+DMYAK G ++++ ++F        VSWNT++VG+ Q
Sbjct: 366 GNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQ 425

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
            G+G +A+ L +DML+      EVT +S+L +C  ++      Q+H+ ++K        +
Sbjct: 426 AGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVV 485

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            NALI+ Y+KCG+I  A   F  ++E D V+W ++I  Y+ HGL  E+++ FE ML    
Sbjct: 486 GNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETEC 545

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           +PD + F+ +LSACS+ GL+  G  YF  M+ +Y I P +EHYTC+  LLGR G L +A 
Sbjct: 546 KPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAA 605

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
            L+  +P EP      A + AC +H  + L + +A+++LE+EP     + L+SN+YA+ R
Sbjct: 606 KLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANAR 665

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            W +VA +R  M+     K PG SWIE  G +H F   D SHP    +  ML
Sbjct: 666 RWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGML 717



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 163/519 (31%), Positives = 273/519 (52%), Gaps = 10/519 (1%)

Query: 56  HESTHSAHSF----YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
             ++HS+  F    Y   L+   + G    GK LH  I+K G C  L   N +L+ YVK 
Sbjct: 33  QRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKY 92

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLL 169
            +  D  KLFDEM  RN V++ TLI G   C         F R+  +   L+   F+++L
Sbjct: 93  DSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVL 152

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
           +  V A+  ++G  +H+ + K+GF  + FV +AL+D Y  CG+ E AR+VFD +  +D+V
Sbjct: 153 KLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMV 212

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  MV+CY  N   + ++ +F+ MR+ G K + FTF+S++ +C  L    +G+ +HG  
Sbjct: 213 SWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCA 272

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
            K S+  ++ V   L+D+Y K+G++DDA +VF+ M   +V+ W+ M+  + Q+    EA+
Sbjct: 273 FKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAI 332

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
           ++   M +G   P++ TLAS+L +C SL       Q+H + +K G+   + + NAL++ Y
Sbjct: 333 EMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMY 392

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           +KCG +  +LQ F        V+W ++I  Y   G  ++++ +F+ ML   V+   + + 
Sbjct: 393 AKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYS 452

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            VL AC+    +  G +  +L +   +   ++     L D+  + G + +A  L+  M  
Sbjct: 453 SVLRACAGIAALEPGSQIHSLSVKTIYD-KNTVVGNALIDMYAKCGNIKDA-RLVFDMLR 510

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE--PSK 566
           E    +  A I    VHG  G A    E +LE E  P K
Sbjct: 511 EHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDK 549


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 186/525 (35%), Positives = 313/525 (59%), Gaps = 5/525 (0%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN 157
           L   ++  Y    +F++   LFDEM  R+++ W ++I+G  +C  +   +  F  ML D 
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKC-GFVED 215
           V+ +  T +++L+AC     +  G+ +H   +K+G  G + +V +AL+D+Y  C   +++
Sbjct: 103 VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDN 162

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR VF+++  ++ V W  +++ Y       G + VF  M +E  +   F+FS  V++C +
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACAS 222

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           +GSS LG+Q+H  VI   F+ ++ V  +++DMY +     +A ++F  MT K+ ++WNT+
Sbjct: 223 IGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTL 282

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + GF +  D  E++ +   M+   F P+  T  S++++C +L+I    +Q+H   I  G+
Sbjct: 283 IAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGL 341

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              L + NALI+ Y+KCG++A + + F  ++  +LV+WTS++  Y  HG  KE++++F +
Sbjct: 342 DNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNE 401

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M+   ++PD I F+ VLSACSH GLV EGLRYF LM S Y++ PD + Y C+ DLL R G
Sbjct: 402 MVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAG 461

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            + EAY+L+ +MP +P      A +GACK +    + K AA K+LE++P+K   Y L+SN
Sbjct: 462 RVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSN 521

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
             A+E  W D A LRK+MR     K  G SWIE+  ++ +F+  D
Sbjct: 522 FSAAEGNWADFASLRKLMRSTKSKKEVGRSWIELKNQVCSFIVGD 566



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 4/299 (1%)

Query: 32  TTITNAQKHDRSVLSS-QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           TT+     H R      ++     + E   S  SF S A+   A  G    GKQ+H+ ++
Sbjct: 179 TTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSF-SIAVSACASIGSSNLGKQVHAAVI 237

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP-Y 149
             G  + L + N +L +Y +C+   + ++LF EM  ++ +TWNTLI+G        +   
Sbjct: 238 NHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFETLDSYESLCI 297

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F +M+ +    +  TF S++ AC     +  G++LH  I+  G   N  +S+AL+D+Y K
Sbjct: 298 FSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAK 357

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG V D+ ++F  +   +LV W  M+  Y  +  G  A+ +FN M   G+K D   F ++
Sbjct: 358 CGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAV 417

Query: 270 VNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           +++C   G    G R    +    +   D  +   +VD+ ++ G + +A  + + M  K
Sbjct: 418 LSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFK 476


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 313/563 (55%), Gaps = 3/563 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A+   +Q G ++H   +KLGL   + + N ++ +Y KC    + + LFD+   +N 
Sbjct: 141 LPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNA 200

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+WNT+I G+   G     +  FR M + +++ ++ +T  ++L AC++   +   + LH 
Sbjct: 201 VSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHG 260

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           + ++ GF  +  V++  V  Y KCG +  A RVF  +  + +  WN ++   A N     
Sbjct: 261 YSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRK 320

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ ++  M   G+  D+FT  SL+ +   L S + G+++HG V++   ++D  +  SL+ 
Sbjct: 321 ALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLS 380

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y   G    A  +FDGM  K+ VSWN M+ G+ QNG   +A+ L R ++   F P ++ 
Sbjct: 381 LYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIA 440

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + S+L +C   S     ++ H YA+K  +   + +  + I+ Y+K G I  +   F  +K
Sbjct: 441 VVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK 500

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             DL +W +II AY  HG  +ESIE+FE+M      PD   F+ +L+ CSH GLV EGL+
Sbjct: 501 NKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLK 560

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YFN M + + I P  EHY C+ D+LGR G L +A  L+  MP +P S    + +  C+  
Sbjct: 561 YFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNF 620

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G + + +  AEKLLELEP    NY  +SN+YA    W DV R+R+M++D    K  GCSW
Sbjct: 621 GELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSW 680

Query: 607 IEIAGEIHTFVSSDRSHPQAVHM 629
           IE+ G++H+FV+ D   PQ+  M
Sbjct: 681 IELGGKVHSFVAGDNLLPQSKEM 703



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 211/404 (52%), Gaps = 11/404 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H  ++K+GL   + + N ++ +Y K    D   K+F  M VRN+V+WN++ISG   
Sbjct: 50  GEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSE 109

Query: 142 CG--GNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            G   +       M+     L  D  T  ++L  C +  D+++G R+H   +K+G   + 
Sbjct: 110 NGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDV 169

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            V+++LVD+Y KCG++ +A+ +FD+   ++ V WN M+      C        FNL R  
Sbjct: 170 RVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGL---CTKGYIFEAFNLFREM 226

Query: 258 GMKGDY----FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
            M+ D      T  +++ +C  +   +  +++HG  I+  F  D LVA   V  YAK G 
Sbjct: 227 QMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGM 286

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A RVF  M  K V SWN ++ G  QNGD R+A+ L   M      PD  T+ S+L +
Sbjct: 287 LICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLA 346

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L      ++VH + +++G++    I  +L++ Y  CG  + A   F  ++E   V+W
Sbjct: 347 SAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSW 406

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            ++I  Y+ +GL ++++ +F K++S   +P  IA + VL ACS 
Sbjct: 407 NAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQ 450



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 176/320 (55%), Gaps = 3/320 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D+ TF  +++AC  + D  +G  +H  ++K+G  L+ FV +AL+ +YGK GFV+ A +VF
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL--EGMKGDYFTFSSLVNSCGTLGS 278
             +  R+LV WN ++S ++ N        +   M    EG+  D  T  +++  C     
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
            ++G +IHGL +K     DV V  SLVDMY+K G + +A  +FD    KN VSWNTM+ G
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209

Query: 339 FGQNGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
               G   EA  L R+M +Q     +EVT+ +IL +C  +S     +++H Y+I++G Q 
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQY 269

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
              + N  + AY+KCG +  A + F S++   + +W ++IG  A +G  ++++ ++ +M 
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329

Query: 458 SHAVRPDSIAFLEVLSACSH 477
              + PD      +L A +H
Sbjct: 330 YSGLVPDWFTIGSLLLASAH 349



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 27/300 (9%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D FTF  ++ +C       LG  IHG+VIK    LDV V  +L+ MY K G +D A +VF
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS--FCPDEVTLASILSSCGSLSI 379
             M  +N+VSWN+++ GF +NG  ++   +L +M+ G     PD  TL ++L  C     
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                ++H  A+K G+   + + N+L++ YSKCG +  A   F      + V+W ++IG 
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209

Query: 440 YAFHGLSKESIEVFEKM-LSHAVRPDSIAFLEVLSAC-----------SHGGLVSEGLRY 487
               G   E+  +F +M +   +  + +  L +L AC            HG  +  G +Y
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQY 269

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             L+ + +                 + G+L+ A  +  SM  +   ++  A IG C  +G
Sbjct: 270 DELVANGF------------VAAYAKCGMLICAERVFYSMETKT-VNSWNALIGGCAQNG 316


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 325/597 (54%), Gaps = 12/597 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + HS Y    +   K   L  G+ +H  + +       S++N +L +Y  C +  D++K+
Sbjct: 86  TPHS-YQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKV 144

Query: 121 FDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FDEM ++N+V+W  +IS     G        F  M    +R +   + SLL++C+    +
Sbjct: 145 FDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFL 204

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           E+G+++HS +++     N  V +A+ ++Y +CG++E A+ VFD +  ++ V W  ++  Y
Sbjct: 205 ELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGY 264

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                 + A+ +F  M +EG++ D F FS ++  C  L    +GRQIH  ++K   + +V
Sbjct: 265 TQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEV 324

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V T LVD Y K G+I+ A R F  ++  N VSW+ ++ GF Q+G   + +K+   +   
Sbjct: 325 SVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSE 384

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               +     S+  +C + +      Q H  AIK G+ ++L  E+A++  YSKCG +  A
Sbjct: 385 GVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYA 444

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F S+ EPD V WT+II  YA+HG + E++  F +M S+ VRP+++ F+ VL+ACSH 
Sbjct: 445 RRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHS 504

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLV+E  +Y   M  DY + P  +HY C+ D   R GLL EA +L+  MP EP + +  +
Sbjct: 505 GLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKS 564

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +G C  H  + L K AAE L  L+P     Y L+ N+Y++   W +   +RK+M +   
Sbjct: 565 LLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAEREL 624

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML----CTVFG-----LMEENNVS 646
            K   CSWI + G++H FV  DR HPQ   +Y+ L    C+V       L EE++VS
Sbjct: 625 KKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVS 681


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 312/578 (53%), Gaps = 2/578 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A +  A    L   +QLH+H +K    +   +   ++ VY K     D  + F  + 
Sbjct: 255 YASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLP 314

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+ T N ++ G++  G        F+ M    V  D I+ + +  AC +      G +
Sbjct: 315 HHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K GF ++  V +A++DLYGKC  + +A  VF E+  RD V WN +++    N  
Sbjct: 375 VHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 434

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            +  IA  N M   GM+ D FT+ S++ +C  L S + G  +HG  IK    LD  V+++
Sbjct: 435 YEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSST 494

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +VDMY K G I +A ++ D +  + +VSWN+++ GF       EA +   +ML     PD
Sbjct: 495 VVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPD 554

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T A++L +C +L+     +Q+H   IK  +     I + L++ Y+KCG++  +L  F 
Sbjct: 555 HFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFE 614

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             ++ D V+W ++I  YA HG   E++E+FE+M    V P+   F+ VL ACSH GL+ +
Sbjct: 615 KARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDD 674

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +YF+LM S Y ++P  EH+ C+ D+LGR     EA + + SMPIE  +      +  C
Sbjct: 675 GCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSIC 734

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+   + +A+ AA  +L L+P     Y L+SNVYA    W DV+R R++MR     K PG
Sbjct: 735 KIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPG 794

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           CSWIE+  E+H F+  D+ HP++  +Y ML ++ G M+
Sbjct: 795 CSWIEVQSEMHGFLVGDKVHPRSKEVYEMLNSLIGEMK 832



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 195/397 (49%), Gaps = 13/397 (3%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  YV     D    LF  M   ++V+WNTLISG    G   N       M    V 
Sbjct: 89  NTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVA 148

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD  T   LL++C   DD+ +G ++H+  +K G   +    SALVD+YGKC  ++DA R 
Sbjct: 149 LDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRF 208

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  +  R+ V W   ++    N      + +F  M+  G+      ++S   SC  +   
Sbjct: 209 FHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCL 268

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
              RQ+H   IK  F  D +V T++VD+YAK GN+ DA R F G+   NV + N M+VG 
Sbjct: 269 STARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGL 328

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            + G G EA++L + M +     D ++L+ + S+C  +    +  QVH  A+K+G    +
Sbjct: 329 VRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDV 388

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + NA+++ Y KC ++  A   F  +++ D V+W +II A   +   +++I    +ML  
Sbjct: 389 CVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRS 448

Query: 460 AVRPDSIAFLEVLSACS-----------HGGLVSEGL 485
            + PD   +  VL AC+           HG  +  GL
Sbjct: 449 GMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGL 485



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 210/439 (47%), Gaps = 3/439 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G Q+H+  +K GL   +   + ++ +Y KC++ DD  + F  M  RN V+W   I+G
Sbjct: 167 LALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAG 226

Query: 139 IINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +           F +M    + +    + S  R+C     +   R+LH+  +K  F  +
Sbjct: 227 CVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSD 286

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +A+VD+Y K G + DARR F  +   ++   N M+       LG  A+ +F  M  
Sbjct: 287 RVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTR 346

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+  D  + S + ++C  +     G Q+H L +K  FD+DV V  +++D+Y K   + +
Sbjct: 347 SGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVE 406

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  ++ VSWN ++    QN    + +  L +ML+    PD+ T  S+L +C  
Sbjct: 407 AYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAG 466

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L        VH  AIK+G+     + + +++ Y KCG+I  A +    +   +LV+W SI
Sbjct: 467 LQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSI 526

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  ++    S+E+   F +ML   V+PD   +  VL  C++   +  G +    +I    
Sbjct: 527 ISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQ-E 585

Query: 497 ILPDSEHYTCLTDLLGRVG 515
           +L D    + L D+  + G
Sbjct: 586 MLGDEYISSTLVDMYAKCG 604



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 180/398 (45%), Gaps = 36/398 (9%)

Query: 164 TFNSLLRACVQA--DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           TF+ L + C  A    +  G+  H+ +L  GF    FVS+ L+ +Y +CG    A  VFD
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM--------------------------- 254
            +  RD V WN M++ Y      D A ++F  M                           
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL 138

Query: 255 ----RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
                  G+  D  T + L+ SCG L    LG QIH L +K   + DV   ++LVDMY K
Sbjct: 139 SMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK 198

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
             ++DDA R F GM  +N VSW   + G  QN      ++L   M +      +   AS 
Sbjct: 199 CRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASA 258

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
             SC ++      RQ+HA+AIKN   +   +  A+++ Y+K G++  A + F  +   ++
Sbjct: 259 FRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNV 318

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
            T  +++      GL  E++++F+ M    V  D I+   V SAC+      +GL+   L
Sbjct: 319 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCL 378

Query: 491 MI-SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            + S + +  D      + DL G+   LVEAY +   M
Sbjct: 379 AVKSGFDV--DVCVRNAILDLYGKCKALVEAYLVFQEM 414



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 125/297 (42%), Gaps = 34/297 (11%)

Query: 265 TFSSLVNSCGTLGSSKL--GRQIHGLVIKQSFDLDVLVATSLVDMYAK------------ 310
           TFS L   C + G S L  G+  H  ++   F     V+  L+ MYA+            
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 311 -------------------NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                               G+ D A  +F  M   +VVSWNT++ G+ Q+G  R +V L
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL 138

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
             +M +     D  TLA +L SCG L       Q+HA A+K G++  +   +AL++ Y K
Sbjct: 139 SMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK 198

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           C S+  AL+ F  + E + V+W + I     +      +E+F +M    +     A+   
Sbjct: 199 CRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASA 258

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             +C+    +S   +     I +     D    T + D+  + G LV+A      +P
Sbjct: 259 FRSCAAMPCLSTARQLHAHAIKNV-FSSDRVVGTAIVDVYAKAGNLVDARRAFIGLP 314



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 5/200 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  Y+  L   A    ++ GKQ+H  I+K  +     + + ++ +Y KC    D   +F+
Sbjct: 555 HFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFE 614

Query: 123 EMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           + R  + V+WN +I G  +   G      F RM   NV  +H TF ++LRAC     ++ 
Sbjct: 615 KARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDD 674

Query: 181 G-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-C 237
           G +  H    +          + +VD+ G+    ++A      + +  D V+W  ++S C
Sbjct: 675 GCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSIC 734

Query: 238 YALNCLGDGAIAVFNLMRLE 257
                +     A  N++RL+
Sbjct: 735 KIRQDVEVAETAASNVLRLD 754


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 318/561 (56%), Gaps = 9/561 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF------DEMRVRNIVTW 132
           L  G+++H  ++K GL  +  L + ++ +Y+KC +  + E +F      D +R RN V W
Sbjct: 227 LTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVR-RNAVIW 285

Query: 133 NTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           N +ISG ++  C       F +M++  ++ D+ T  SL   C ++ DI  G+++H  I K
Sbjct: 286 NVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFK 345

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G   N  V +AL+D+Y KCG +    ++F      +L++W+ ++S  A +     A+ +
Sbjct: 346 FGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALEL 405

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F   ++E    D     +++ +C +L     G QIHGL  K  F  DV V ++LVD+YAK
Sbjct: 406 FYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAK 465

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
             ++  + +VF  ++ K++VSWN ++ G+ Q+    EA+K  RDM      P+ VT+A I
Sbjct: 466 CRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACI 525

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           LS C  LS+    ++VH Y I+ G+ + + + N+LI  Y+KCG I  +L  F  + E + 
Sbjct: 526 LSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERND 585

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+W SII     H  + E I +F+KM++  ++PD + F  +LSACSH G V EG +YF  
Sbjct: 586 VSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKS 645

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M+ D+++ P  E YTC+ DLLGR G L +AYDL+ +MP  P     G+ +G+CK HG   
Sbjct: 646 MVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEI 705

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           LA+  A  + +L PS      L++N+Y +     + +++R  ++D    K PGCSWIE+ 
Sbjct: 706 LAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVD 765

Query: 611 GEIHTFVSSDRSHPQAVHMYA 631
              H F++ DRSH Q+  +YA
Sbjct: 766 NNFHIFIAGDRSHSQSDEIYA 786



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 258/510 (50%), Gaps = 41/510 (8%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G+Q+H H++KLG+ + +S+ N +L +Y KC   +D  ++F++M   ++V+WNT+ISG  
Sbjct: 127 KGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQ 186

Query: 141 NCGGNVTP--YFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                     +FR M+ +  +  + +   S + +C     +  GR +H  ++K G  +  
Sbjct: 187 KSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEE 246

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRD-----LVLWNVMVSCYALNCLGDGAIAVFN 252
           ++ S+L+++Y KCG +++A  +F+ +L +D      V+WNVM+S Y  N     A+ +F 
Sbjct: 247 YLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFI 306

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M + G+K DY T  SL + C        G+QIHGL+ K     ++ V T+L+DMY K G
Sbjct: 307 KMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCG 366

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++    ++F      N++ W+ ++    Q+G   +A++L  +        D   L ++L 
Sbjct: 367 DMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLR 426

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C SL++  E  Q+H  A K G  + + + +AL++ Y+KC  +  + + F  + + DLV+
Sbjct: 427 ACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVS 486

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLV 481
           W ++I  YA    + E+++ F  M    +RP+++    +LS C+           HG L+
Sbjct: 487 WNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLI 546

Query: 482 SEGL----RYFNLMISDY-------------HILPDSEHYTCLTDLLG-----RVGLLVE 519
            +GL       N +I+ Y               +P+    +  + +LG     R   ++ 
Sbjct: 547 RQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIV 606

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            +D + +  I+P   T  A + AC   G +
Sbjct: 607 LFDKMVASGIKPDHVTFTAILSACSHAGRV 636



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 187/349 (53%), Gaps = 9/349 (2%)

Query: 150 FRRMLLDNVRLDHIT-FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           + +ML D V+++    F  L++A     D+  GR++H  +LK+G   +  V ++L+ +Y 
Sbjct: 96  YLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYW 155

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFS 267
           KCG VEDA ++F+++   DLV WN M+S +  +     ++  F  M  E G+  +     
Sbjct: 156 KCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACV 215

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S + SC +L S   GR+IHG+V+K   D++  + +SL++MY K G+I +A  +F+ +  K
Sbjct: 216 SSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDK 275

Query: 328 -----NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG-SLSISC 381
                N V WN M+ G+  NG   +A+ L   M+     PD  T+ S+ S C  SL I+ 
Sbjct: 276 DSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAF 335

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             +Q+H    K G++  + +E AL++ Y KCG +   L+ F   +  +L+ W+++I   A
Sbjct: 336 -GKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCA 394

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
             G   +++E+F +        DS   + VL ACS   L  EG++   L
Sbjct: 395 QSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGL 443



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 7/253 (2%)

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT-FSSLVNSCGTLGSSKLGRQIHGLVI 290
           N ++  Y  +   D AI V+  M  +G+K + F  F  L+ + G L     GRQIHG V+
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K     DV V  SL+ MY K G ++DA ++F+ M   ++VSWNTM+ GF ++ D   ++ 
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 351 LLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
             R M+ +    P+ V   S + SC SL      R++H   +K+G+     + ++LI  Y
Sbjct: 197 FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMY 256

Query: 410 SKCGSIAGALQCFGSVKEPD-----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
            KCGSI  A   F S+ + D      V W  +I  Y  +G   +++ +F KM+   ++PD
Sbjct: 257 MKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPD 316

Query: 465 SIAFLEVLSACSH 477
               + + S CS 
Sbjct: 317 YSTMVSLFSLCSE 329



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 126/251 (50%), Gaps = 3/251 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  +      +G Q+H    K+G  + + + + ++ +Y KC+     +K+F  +  +++
Sbjct: 425 LRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDL 484

Query: 130 VTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN LISG     C       FR M L+ +R + +T   +L  C     + + + +H +
Sbjct: 485 VSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGY 544

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           +++ G G    VS++L+  Y KCG +  +   F+++  R+ V WN ++    ++   D  
Sbjct: 545 LIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEM 604

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSLVD 306
           I +F+ M   G+K D+ TF++++++C   G    G +    +V   +    +   T +VD
Sbjct: 605 IVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVD 664

Query: 307 MYAKNGNIDDA 317
           +  + G+++ A
Sbjct: 665 LLGRAGHLNQA 675



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A    +   K++H ++++ GL + + + N ++  Y KC   +     F++M  RN 
Sbjct: 526 LSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERND 585

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHS 186
           V+WN++I   G+ +    +   F +M+   ++ DH+TF ++L AC  A  ++ G +   S
Sbjct: 586 VSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKS 645

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSC 237
            +            + +VDL G+ G +  A  +   + C   D +  +++ SC
Sbjct: 646 MVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSC 698


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 322/567 (56%), Gaps = 4/567 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GK++H  + K+G  + + +   ++H+Y +    D   K+F +M V+++ +WN +ISG
Sbjct: 137 LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G          RM  + V++D IT  S+L  C Q+DD+  G  +H  +LK G   +
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FVS+AL+++Y K G ++DA+ VFD++  RDLV WN +++ Y  N     A+  F  M+L
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNID 315
            G++ D  T  SL +    L   ++ R I G VI++ + D DV++  +LV+MYAK G ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSC 374
            A  VFD +  K+ +SWNT+V G+ QNG   EA+     M +     P++ T  SI+ + 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             +    +  ++HA  IKN +   + +   LI+ Y KCG +  A+  F  +     V W 
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +II +   HG  +E++++F+ ML+  V+ D I F+ +LSACSH GLV EG + F++M  +
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I P  +HY C+ DLLGR G L +AY+L+ +MPI+P +   GA + ACK++G+  L   
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           A+++LLE++      Y L+SN+YA+   W  V ++R + RD    K PG S + +  +  
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLME 641
            F + +++HP+   +Y  L  +   M+
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMK 703



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 244/473 (51%), Gaps = 13/473 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K+LH+ ++  G    + L  +++++YV           FD +  +NI +WN++IS  +  
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 143 GGN------VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           G        V   F      ++R D  TF  +L+ACV   D   G+++H  + K+GF  +
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV+++LV LY + G ++ A +VF ++  +D+  WN M+S +  N    GA+ V N M+ 
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+K D  T +S++  C        G  IH  V+K   D DV V+ +L++MY+K G + D
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VFD M  +++VSWN+++  + QN D   A++  + M  G   PD +T+ S+ S    
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 377 LSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           LS    +R +  + I+   +   + I NAL+N Y+K G +  A   F  +   D ++W +
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 436 IIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++  Y  +GL+ E+I+ +  M       P+   ++ ++ A SH G + +G++    +I +
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
              L D    TCL DL G+ G L +A  L   +P +  S    A I +  +HG
Sbjct: 456 SLYL-DVFVATCLIDLYGKCGRLEDAMSLFYEIPRD-TSVPWNAIIASLGIHG 506



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 197/381 (51%), Gaps = 6/381 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A+   +  G  +H H++K GL + + + N ++++Y K     D + +FD+M VR++
Sbjct: 229 LPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL 288

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+     N       +F+ M L  +R D +T  SL     Q  D  + R +  F
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 188 ILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           +++  +   +  + +ALV++Y K G++  A  VFD++  +D + WN +V+ Y  N L   
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 247 AIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI  +N+M        +  T+ S++ +   +G+ + G +IH  +IK S  LDV VAT L+
Sbjct: 409 AIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLI 468

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K G ++DA  +F  +     V WN ++   G +G G EA++L +DML      D +
Sbjct: 469 DLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHI 528

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           T  S+LS+C    +  E ++      K  G++  L     +++   + G +  A +   +
Sbjct: 529 TFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRN 588

Query: 425 VK-EPDLVTWTSIIGAYAFHG 444
           +  +PD   W +++ A   +G
Sbjct: 589 MPIQPDASIWGALLSACKIYG 609



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 18/321 (5%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           FN+L  +CV   ++   ++LH+ +L  G   N  +S+ L++LY   G +  +R  FD + 
Sbjct: 25  FNALFNSCV---NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 225 CRDLVLWNVMVSCY--------ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
            +++  WN ++S Y        A+NC+      +F++     ++ D++TF  ++ +C +L
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQ----LFSMCGGGHLRPDFYTFPPILKACVSL 137

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                G+++H  V K  F+ DV VA SLV +Y++ G +D A +VF  M  K+V SWN M+
Sbjct: 138 VD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            GF QNG+   A+ +L  M       D +T+ASIL  C           +H + +K+G+ 
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD 254

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + + + NALIN YSK G +  A   F  ++  DLV+W SII AY  +     ++  F+ M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 457 LSHAVRPDSIAFLEVLSACSH 477
               +RPD +  + + S  S 
Sbjct: 315 QLGGIRPDLLTVVSLTSIFSQ 335



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F++L NSC  + ++K   ++H L++      +++++T L+++Y  +G+I  +   FD + 
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ----GSFCPDEVTLASILSSCGSLSISC 381
            KN+ SWN+++  + + G   EA+  +  +      G   PD  T   IL +C SL    
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL---V 138

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
           + ++VH    K G +  + +  +L++ YS+ G +  A + F  +   D+ +W ++I  + 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            +G +  ++ V  +M    V+ D+I    +L  C+    V  G+
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV 242


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 326/599 (54%), Gaps = 5/599 (0%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+   +  A    L+ G QLH+H +K    + +++    L +Y KC +  D +++F
Sbjct: 276 SQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIF 335

Query: 122 DEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           + +   ++  +N +I G +    G     +F+ +L   +  + I+ +    AC       
Sbjct: 336 NSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDL 395

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            GR+LHS  +K     N  V+++++D+YGKC  + +A  +FDE+  RD V WN +++ + 
Sbjct: 396 DGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHE 455

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   +  + +F  M    M+ D FT+ S++ +C +  +   G +IH  +IK    LD  
Sbjct: 456 QNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSF 515

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +L+DMY K G I++A ++ D +  + +VSWN ++ GF       +A     +ML+ S
Sbjct: 516 VGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMS 575

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  T A +L +C +L+     +Q+H   IK  + + + I + L++ YSKCG++  + 
Sbjct: 576 VKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSA 635

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F      D VTW ++I  YA HGL +E++  FE+M    VRP+   F+ +L AC+H G
Sbjct: 636 LVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMG 695

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            + +GL YFN M+++Y + P  EHY+C+ D++GR G + EA  L+  MP E  +      
Sbjct: 696 FIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTL 755

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  CK+HG+I +A+ A   +L+LEP       L+SN+YA    W  V+ +RKMMR N   
Sbjct: 756 LSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLK 815

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           K PGCSWIE+  E+H F+  +++HP+   +Y +L     L++E    G+   +D  +DE
Sbjct: 816 KEPGCSWIEVKDEVHAFLVGNKTHPRYEEIYKILSV---LLDEMKWIGYIPDIDFLIDE 871



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 249/496 (50%), Gaps = 7/496 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G Q+H  I+++G    +   + +L +Y KCK  DD  K+F E+ V+N V W+ +I+G + 
Sbjct: 195 GIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQ 254

Query: 142 CGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              ++     F+ M    + +    + S+ R+C     ++VG +LH+  LK  FG +  V
Sbjct: 255 NDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITV 314

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A +D+Y KCG + DA+R+F+ +    L  +N ++     N  G  A+  F L+   G+
Sbjct: 315 GTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGL 374

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             +  + S   ++C ++     GRQ+H L +K +   ++ VA S++DMY K   + +AC 
Sbjct: 375 GFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACC 434

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  ++ VSWN ++    QNG+  E + L   ML+    PD+ T  S+L +C S   
Sbjct: 435 MFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQA 494

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                ++H   IK+G+     +  ALI+ Y KCG I  A +    +++  +V+W +II  
Sbjct: 495 LNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAG 554

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL-RYFNLMISDYHIL 498
           +     S+++   F +ML  +V+PD+  +  VL AC++  L S GL +  +  I    + 
Sbjct: 555 FTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACAN--LASVGLGKQIHGQIIKLELH 612

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
            D    + L D+  + G + ++  +    P +    T  A I     HG +G       +
Sbjct: 613 SDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFV-TWNAMICGYAQHG-LGEEALGYFE 670

Query: 559 LLELEPSKPVNYALVS 574
            ++LE  +P +   VS
Sbjct: 671 RMQLENVRPNHATFVS 686



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/567 (24%), Positives = 281/567 (49%), Gaps = 71/567 (12%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  ++  + +  L+ GKQ H+ ++  G    + + N ++ +Y++C   +   K+F++M 
Sbjct: 46  FSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMS 105

Query: 126 VRNIVTWNTLISGIINCGG-NVTPYF-------------------------RR---MLLD 156
            R+++++NT+ISG  + G  N+   F                         R+   + LD
Sbjct: 106 QRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLD 165

Query: 157 -----NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
                 V  D  TF  +L+AC   +D  +G ++H  I+++GF  +    SAL+D+Y KC 
Sbjct: 166 MGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCK 225

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            ++D+ ++F E+  ++ V W+ +++    N      + +F  M+  G+      ++S+  
Sbjct: 226 RLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFR 285

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           SC  L + K+G Q+H   +K  F  D+ V T+ +DMYAK G++ DA R+F+ +   ++  
Sbjct: 286 SCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQC 345

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           +N ++VG  +N  G EA++  + +L+     +E++L+   S+C S+    + RQ+H+ ++
Sbjct: 346 YNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSV 405

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           K+ +++ + + N++++ Y KC +++ A   F  ++  D V+W ++I A+  +G  +E++ 
Sbjct: 406 KSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLN 465

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F  ML   + PD   +  VL ACS    ++ G+   N +I     L DS     L D+ 
Sbjct: 466 LFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGL-DSFVGGALIDMY 524

Query: 512 GRVGLLVEA-----------------------------------YDLLASMPIEPRSDTL 536
            + G++ EA                                   Y++L  M ++P + T 
Sbjct: 525 CKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEML-KMSVKPDNFTY 583

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELE 563
              + AC    S+GL K    ++++LE
Sbjct: 584 AIVLDACANLASVGLGKQIHGQIIKLE 610



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 178/345 (51%), Gaps = 32/345 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF+ +++ C   + ++ G++ H+ ++  GF  + ++S+ L+ +Y +C  +  A +VF+++
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 224 LCRDLVLWNVMVSCYA----------------------LNCLGDG---------AIAVF- 251
             RD++ +N M+S YA                       N +  G         +I VF 
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           ++ R E +  D  TF+ ++ +C  L    LG Q+HGL+++  F  DV+  ++L+DMYAK 
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
             +DD+ ++F  +  KN V W+ ++ G  QN +    ++L ++M +      +   AS+ 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            SC  LS      Q+HA+A+K    + +++  A ++ Y+KCGS+A A + F S+ +  L 
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ 344

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            + +II     +    E+++ F+ +L   +  + I+     SAC+
Sbjct: 345 CYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 23/204 (11%)

Query: 54  TIHESTHSAHSFYSQALKVSAK---------------FGFLQQGKQLHSHIMKLGLCNKL 98
           T+ + +  AHSF+ + LK+S K                  +  GKQ+H  I+KL L + +
Sbjct: 556 TLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDV 615

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLD 156
            + + ++ +Y KC    D   +F++   ++ VTWN +I G      G     YF RM L+
Sbjct: 616 YITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLE 675

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSF-ILKVGFGLNCFVS--SALVDLYGKCGFV 213
           NVR +H TF S+LRAC     I+ G  LH F  +   +GL   +   S ++D+ G+ G +
Sbjct: 676 NVRPNHATFVSILRACAHMGFIDKG--LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRI 733

Query: 214 EDARRVFDEV-LCRDLVLWNVMVS 236
            +A ++  E+    D V+W  ++S
Sbjct: 734 SEALKLIQEMPFEADAVIWRTLLS 757



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 35/297 (11%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           TFS ++  C    S K G+Q H  +I   F  DV ++  L+ MY +  +++ A +VF+ M
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 325 TAKNVVSWNTMVVGFG-------------------------------QNGDGREAVKLLR 353
           + ++V+S+NTM+ G+                                QNG+ R+++ +  
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 354 DMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           DM +      D+ T A +L +C  L       QVH   ++ G    +   +AL++ Y+KC
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
             +  +L+ F  +   + V W++II     +      +E+F++M    +      +  V 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 473 SACSHGGLVSEGLR-YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            +C+    +  G + + + +  D+    D    T   D+  + G L +A  +  S+P
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFG--SDITVGTATLDMYAKCGSLADAQRIFNSLP 339


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 354/686 (51%), Gaps = 108/686 (15%)

Query: 82  GKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G+ +H+ I+K GL    + L N +L++YVK  +  D  +LFDEM ++   +WNT++S   
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 141 NCGG---------------------------------NVTPYFRRMLLDNVRLDHITFNS 167
             G                                  +    F RM+   +     TF +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           +L +C  A  ++VG+++HSF++K+G      V+++L+++Y KCG    A+ VFD +  +D
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFN--------------------------------LMR 255
              WN M+S +   C  D A+A+F+                                +++
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD-------------------- 295
              +K D FT  S++++C    S KLG+QIH  +++   D                    
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 296 -------------LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
                        L+V+  TSL+D Y K G+ID A  +FD +  ++VV+W  M+VG+ QN
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   +A+ L R M++    P+  TLA++LS   SL+     +Q+HA AI+    + +S+ 
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVG 450

Query: 403 NALINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           NALI  YS+ GSI  A + F  +    D +TWTS+I + A HGL  E+IE+FEKML   +
Sbjct: 451 NALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINL 510

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           +PD I ++ VLSAC+H GLV +G  YFNLM + ++I P S HY C+ DLLGR GLL EAY
Sbjct: 511 KPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAY 570

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           + + +MPIEP     G+ + +C+VH  + LAK AAEKLL ++P+    Y  ++N  ++  
Sbjct: 571 NFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACG 630

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF---- 637
            W D A++RK M+D    K  G SW++I  ++H F   D  HPQ   +Y M+  ++    
Sbjct: 631 KWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIK 690

Query: 638 --GLMEENNVSGHCNVLDKEMDECTL 661
             G + + N   H   L++E+ E  L
Sbjct: 691 KMGFIPDTNSVLHD--LEQEVKEQIL 714



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 229/485 (47%), Gaps = 78/485 (16%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A    L  GK++HS ++KLG    + + N +L++Y KC      + +FD MR
Sbjct: 148 FTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMR 207

Query: 126 VRNIVTWNTLIS---------------------GIINCGGNVTPY------------FRR 152
           +++  TWNT+IS                      I++    +T Y            F  
Sbjct: 208 LKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSF 267

Query: 153 MLL-DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           ML   +++ D  T  S+L AC   + +++G+++H+ I++    +   V +AL+ +Y K G
Sbjct: 268 MLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327

Query: 212 FVE---------------------------------DARRVFDEVLCRDLVLWNVMVSCY 238
            VE                                  AR +FD +  RD+V W  M+  Y
Sbjct: 328 AVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGY 387

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N L   A+ +F LM  EG K + +T +++++   +L S   G+Q+H + I+      V
Sbjct: 388 AQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSV 447

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
            V  +L+ MY+++G+I DA ++F+ + + ++ ++W +M++   Q+G G EA++L   ML+
Sbjct: 448 SVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR 507

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENALINAYSKCGSI 415
            +  PD +T   +LS+C  + +  E  + +   +KN   ++   S    +I+   + G +
Sbjct: 508 INLKPDHITYVGVLSACTHVGL-VEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLL 566

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS----IAFLE 470
             A     ++  EPD+V W S++ +   H     +    EK+L   + P++    +A   
Sbjct: 567 EEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLL--LIDPNNSGAYLALAN 624

Query: 471 VLSAC 475
            LSAC
Sbjct: 625 TLSAC 629



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 181/406 (44%), Gaps = 97/406 (23%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           LL++ +++ D  +GR +H+ I+K G   L  F+++ L++LY K G   DA R+FDE+  +
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 227 DLVLWNVMVSCYA-----------------------------LNCLGDGAIAVFNLMRL- 256
               WN ++S +A                              N LG    AV   +R+ 
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 257 -EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN-- 313
             G+    FTF++++ SC    +  +G+++H  V+K      V VA SL++MYAK G+  
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 314 -----------------------------IDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
                                         D A  +FD MT  ++VSWN+++ G+   G 
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257

Query: 345 GREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              A++    ML+  S  PD+ TL S+LS+C +       +Q+HA+ ++  V    ++ N
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN 317

Query: 404 ALINAYSKCGS---------------------------------IAGALQCFGSVKEPDL 430
           ALI+ Y+K G+                                 I  A   F S+K  D+
Sbjct: 318 ALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDV 377

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           V WT++I  YA +GL  +++ +F  M+    +P++     VLS  S
Sbjct: 378 VAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVIS 423



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 64/261 (24%)

Query: 281 LGRQIHGLVIKQSFD-LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN------ 333
           +GR IH  +IK     L V +  +L+++Y K G+  DA R+FD M  K   SWN      
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 334 -------------------------TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
                                    TM+VG+   G  + AV     M+     P + T  
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG-SIAG---------- 417
           ++L+SC +       ++VH++ +K G    + + N+L+N Y+KCG S+            
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLK 209

Query: 418 --------------------ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
                               AL  F  + +PD+V+W SII  Y   G    ++E F  ML
Sbjct: 210 DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFML 269

Query: 458 -SHAVRPDSIAFLEVLSACSH 477
            S +++PD      VLSAC++
Sbjct: 270 KSSSLKPDKFTLGSVLSACAN 290



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 105/215 (48%), Gaps = 13/215 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRN 128
           L V +    L  GKQLH+  ++L   + +S+ N ++ +Y +  +  D  K+F+ +   R+
Sbjct: 419 LSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRD 478

Query: 129 IVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            +TW ++I  +     G      F +ML  N++ DHIT+  +L AC     +E G+   +
Sbjct: 479 TLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFN 538

Query: 187 FILKVGFGLNCFVSSA----LVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSCYAL 240
            +  V    N   +S+    ++DL G+ G +E+A      + +  D+V W +++ SC   
Sbjct: 539 LMKNVH---NIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVH 595

Query: 241 NCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
             +    +A   L+ ++    G Y   ++ +++CG
Sbjct: 596 KYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACG 630


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 319/567 (56%), Gaps = 2/567 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L + A  G    G QLH  ++  G      + N ++ +Y KC       KLF+ M 
Sbjct: 216 YTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMP 275

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + VTWN LI+G +  G      P F  M+   V+ D +TF S L + +++  +   + 
Sbjct: 276 QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKE 335

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS+I++     + ++ SAL+D+Y K G VE AR++F + +  D+ +   M+S Y L+ L
Sbjct: 336 VHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGL 395

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI  F  +  EGM  +  T +S++ +C  + + K G+++H  ++K+  +  V V ++
Sbjct: 396 NIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSA 455

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           + DMYAK G +D A   F  M+ ++ V WN+M+  F QNG    A+ L R M       D
Sbjct: 456 ITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFD 515

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V+L+S LS+  +L      +++H Y I+N   +   + + LI+ YSKCG++A A   F 
Sbjct: 516 SVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFN 575

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   + V+W SII AY  HG  +E ++++ +ML   + PD + FL ++SAC H GLV E
Sbjct: 576 LMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDE 635

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ YF+ M  +Y I    EHY C+ DL GR G + EA+D + SMP  P +   G  +GAC
Sbjct: 636 GIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGAC 695

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++HG++ LAK A+  LLEL+P     Y L+SNV+A    W  V ++R +M++    K+PG
Sbjct: 696 RLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPG 755

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            SWI++ G  H F ++D +HP++V +Y
Sbjct: 756 YSWIDVNGGTHMFSAADGNHPESVEIY 782



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 237/454 (52%), Gaps = 9/454 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +QQ +Q+H+ ++  G+ +  +  ++VL +YV C  F D   LF E+ +R  + WN +I G
Sbjct: 27  VQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRG 86

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   G       ++ +ML  NV  D  TF  +++AC   +++ +   +H     +GF ++
Sbjct: 87  LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVD 146

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F  SAL+ LY   G++ DARRVFDE+  RD +LWNVM+  Y  +   D AI  F  MR 
Sbjct: 147 LFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRT 206

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
                +  T++ +++ C T G+   G Q+HGLVI   F+ D  VA +LV MY+K GN+  
Sbjct: 207 SYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLY 266

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS--- 373
           A ++F+ M   + V+WN ++ G+ QNG   EA  L   M+     PD VT AS L S   
Sbjct: 267 ARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILE 326

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            GSL      ++VH+Y +++ V   + +++ALI+ Y K G +  A + F      D+   
Sbjct: 327 SGSLR---HCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVC 383

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T++I  Y  HGL+ ++I  F  ++   +  +S+    VL AC+    +  G +  +  I 
Sbjct: 384 TAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPG-KELHCHIL 442

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
              +       + +TD+  + G L  AY+    M
Sbjct: 443 KKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRM 476



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 199/384 (51%), Gaps = 2/384 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H     LG    L   + ++ +Y       D  ++FDE+ +R+ + WN ++ G +  G 
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGD 193

Query: 145 --NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             N    F  M      ++ +T+  +L  C    +   G +LH  ++  GF  +  V++ 
Sbjct: 194 FDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANT 253

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           LV +Y KCG +  AR++F+ +   D V WN +++ Y  N   D A  +FN M   G+K D
Sbjct: 254 LVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 313

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF+S + S    GS +  +++H  +++     DV + ++L+D+Y K G+++ A ++F 
Sbjct: 314 SVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQ 373

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
                +V     M+ G+  +G   +A+   R ++Q     + +T+AS+L +C +++    
Sbjct: 374 QNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKP 433

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            +++H + +K  ++  +++ +A+ + Y+KCG +  A + F  + + D V W S+I +++ 
Sbjct: 434 GKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQ 493

Query: 443 HGLSKESIEVFEKMLSHAVRPDSI 466
           +G  + +I++F +M     + DS+
Sbjct: 494 NGKPEIAIDLFRQMGMSGAKFDSV 517



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 161/322 (50%), Gaps = 2/322 (0%)

Query: 160 LDHIT--FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           LD +T    SL RAC  A  ++  R++H+ ++  G G  C  SS ++ LY  CG   DA 
Sbjct: 7   LDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAG 66

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            +F E+  R  + WN M+    +    D A+  +  M    +  D +TF  ++ +CG L 
Sbjct: 67  NLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLN 126

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           +  L   +H       F +D+   ++L+ +YA NG I DA RVFD +  ++ + WN M+ 
Sbjct: 127 NVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLR 186

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G+ ++GD   A+    +M       + VT   ILS C +    C   Q+H   I +G + 
Sbjct: 187 GYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEF 246

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
              + N L+  YSKCG++  A + F ++ + D VTW  +I  Y  +G + E+  +F  M+
Sbjct: 247 DPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMI 306

Query: 458 SHAVRPDSIAFLEVLSACSHGG 479
           S  V+PDS+ F   L +    G
Sbjct: 307 SAGVKPDSVTFASFLPSILESG 328


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 311/558 (55%), Gaps = 4/558 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +G+QLH++  KLG  +   ++  +L++Y KC   +     F E  V N+V WN ++
Sbjct: 363 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 422

Query: 137 --SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              G+++   N    FR+M ++ +  +  T+ S+L+ C++  D+E+G ++HS I+K  F 
Sbjct: 423 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 482

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           LN +V S L+D+Y K G ++ A  +      +D+V W  M++ Y      D A+  F  M
Sbjct: 483 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 542

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G++ D    ++ V++C  L + K G+QIH       F  D+    +LV +Y++ G I
Sbjct: 543 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 602

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +++   F+   A + ++WN +V GF Q+G+  EA+++   M +     +  T  S + + 
Sbjct: 603 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 662

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
              +   + +QVHA   K G  +   + NALI+ Y+KCGSI+ A + F  V   + V+W 
Sbjct: 663 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 722

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +II AY+ HG   E+++ F++M+   VRP+ +  + VLSACSH GLV +G+ YF  M S+
Sbjct: 723 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 782

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y + P  EHY C+ D+L R GLL  A + +  MPI+P +      + AC VH ++ + ++
Sbjct: 783 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 842

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA  LLELEP     Y L+SN+YA  + W      R+ M++    K PG SWIE+   IH
Sbjct: 843 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 902

Query: 615 TFVSSDRSHPQA--VHMY 630
           +F   D++HP A  +H Y
Sbjct: 903 SFYVGDQNHPLADEIHEY 920



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 148/486 (30%), Positives = 242/486 (49%), Gaps = 8/486 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L    K   L+ G+QLH  ++KLG  +   + N ++ +Y         E +F  M 
Sbjct: 251 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 310

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ VT+NTLI+G+  C  G      F+RM LD +  D  T  SL+ AC     +  G++
Sbjct: 311 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 370

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH++  K+GF  N  +  AL++LY KC  +E A   F E    ++VLWNVM+  Y L   
Sbjct: 371 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 430

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M++E +  + +T+ S++ +C  LG  +LG QIH  +IK +F L+  V + 
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 490

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G +D A  +      K+VVSW TM+ G+ Q     +A+   R ML      D
Sbjct: 491 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 550

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           EV L + +S+C  L    E +Q+HA A  +G  + L  +NAL+  YS+CG I  +   F 
Sbjct: 551 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE 610

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             +  D + W +++  +   G ++E++ VF +M    +  ++  F   + A S    + +
Sbjct: 611 QTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ 670

Query: 484 GLRYFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           G +   ++    +   DSE   C  L  +  + G + +A      +  +    +  A I 
Sbjct: 671 GKQVHAVITKTGY---DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV-SWNAIIN 726

Query: 542 ACKVHG 547
           A   HG
Sbjct: 727 AYSKHG 732



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 234/453 (51%), Gaps = 8/453 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +G++LHS I+KLGL +   L  ++   Y+         K+FDEM  R I TWN +I
Sbjct: 59  GSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMI 118

Query: 137 SGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGF 193
             +   N  G V   F RM+ +NV  +  TF+ +L AC       +V  ++H+ IL  G 
Sbjct: 119 KELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGL 178

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             +  V + L+DLY + GFV+ ARRVFD +  +D   W  M+S  + N     AI +F  
Sbjct: 179 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 238

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G+    + FSS++++C  + S ++G Q+HGLV+K  F  D  V  +LV +Y   GN
Sbjct: 239 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 298

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A  +F  M+ ++ V++NT++ G  Q G G +A++L + M      PD  TLAS++ +
Sbjct: 299 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 358

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C +       +Q+HAY  K G  +   IE AL+N Y+KC  I  AL  F   +  ++V W
Sbjct: 359 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 418

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             ++ AY      + S  +F +M    + P+   +  +L  C   G +  G +  + +I 
Sbjct: 419 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 478

Query: 494 DYHILPDSEHYTC--LTDLLGRVGLLVEAYDLL 524
               L     Y C  L D+  ++G L  A+D+L
Sbjct: 479 TNFQL---NAYVCSVLIDMYAKLGKLDTAWDIL 508



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 35/327 (10%)

Query: 258 GMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           G++ ++ T   L+  C  T GS   GR++H  ++K   D +  ++  L D Y   G++  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  + + +WN M+          E   L   M+  +  P+E T + +L +C  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 377 LSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            S++ +   Q+HA  +  G++    + N LI+ YS+ G +  A + F  ++  D  +W +
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 218

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEG 484
           +I   + +    E+I +F  M    + P   AF  VLSAC            HG ++  G
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 485 LR------------YFNL--MISDYHILP-----DSEHYTCLTDLLGRVGLLVEAYDLLA 525
                         YF+L  +IS  HI       D+  Y  L + L + G   +A +L  
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 338

Query: 526 SM---PIEPRSDTLGAFIGACKVHGSI 549
            M    +EP S+TL + + AC   G++
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTL 365



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 6/225 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  A+K +++   ++QGKQ+H+ I K G  ++  + N ++ +Y KC +  D EK F E+ 
Sbjct: 655 FGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVS 714

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
            +N V+WN +I+       G      F +M+  NVR +H+T   +L AC     ++ G  
Sbjct: 715 TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 774

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS-CYAL 240
              S   + G          +VD+  + G +  A+    E+  + D ++W  ++S C   
Sbjct: 775 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 834

Query: 241 NCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
             +  G  A  +L+ LE      Y   S+L        +  L RQ
Sbjct: 835 KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQ 879


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/602 (32%), Positives = 337/602 (55%), Gaps = 12/602 (1%)

Query: 31  TTTITNAQKHDRSVLS----SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLH 86
           TT I    K  RS +S    +Q+R +  + +         S  L   +   FL+ GKQ+H
Sbjct: 199 TTIIAGYTKCGRSAVSLELFAQMRETNVVPD-----RYVVSSVLSACSMLEFLEGGKQIH 253

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN- 145
           +++++ G    +S+ N ++  Y KC       KLFD+M V+NI++W T+ISG +    + 
Sbjct: 254 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDW 313

Query: 146 -VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
                F  M     + D     S+L +C   + +E GR++H++ +K     + FV + L+
Sbjct: 314 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLI 373

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           D+Y K   + DA++VFD +  ++++ +N M+  Y+       A+ +F+ MR+        
Sbjct: 374 DMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL 433

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           TF SL+    +L + +L +QIHGL+IK    LD+   ++L+D+Y+K   + DA  VF+ M
Sbjct: 434 TFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 493

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             K++V WN M  G+ Q+ +  EA+KL   +      P+E T A+++++  +L+     +
Sbjct: 494 NEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQ 553

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q H   +K G+     + NAL++ Y+KCGSI  A + F S    D+V W S+I  +A HG
Sbjct: 554 QFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHG 613

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            ++E++ +F +M+   ++P+ + F+ VLSACSH G V +GL +FN M   + I P +EHY
Sbjct: 614 EAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHY 672

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+  LLGR G L EA + +  MPIEP +    + + AC++ G++ L K+AAE  +  +P
Sbjct: 673 ACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDP 732

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
               +Y L+SN++AS+  W DV ++R  M  +   K PG SWIE+  +++ F++ D +H 
Sbjct: 733 KDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHR 792

Query: 625 QA 626
           +A
Sbjct: 793 EA 794



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 229/435 (52%), Gaps = 2/435 (0%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H      +  ++   + G +++G QLH  +++ G    + +   ++  Y K    ++   
Sbjct: 126 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARL 185

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FD++  +  VTW T+I+G   CG +      F +M   NV  D    +S+L AC   + 
Sbjct: 186 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 245

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +E G+++H+++L+ G  ++  V + L+D Y KC  V+  R++FD+++ ++++ W  M+S 
Sbjct: 246 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 305

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y  N     A+ +F  M   G K D F  +S++ SCG+  + + GRQ+H   IK + + D
Sbjct: 306 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 365

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             V   L+DMYAK+  + DA +VFD M  +NV+S+N M+ G+       EA++L  +M  
Sbjct: 366 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 425

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
             F P  +T  S+L    SL     ++Q+H   IK GV   L   +ALI+ YSKC  +  
Sbjct: 426 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKD 485

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  + E D+V W ++   Y  H  ++E+++++  +     +P+   F  +++A S+
Sbjct: 486 ARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 545

Query: 478 GGLVSEGLRYFNLMI 492
              +  G ++ N ++
Sbjct: 546 LASLRHGQQFHNQLV 560



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 213/398 (53%), Gaps = 13/398 (3%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K +H  I+  GL +   L N +++V  K    D+   +FD+M  +N++TW++++S     
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 143 GGNVTPYFRRMLLDNVRL--------DHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G     Y    L+  V L        +     S++RAC Q   +E G +LH F+++ GF 
Sbjct: 107 G-----YSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD 161

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + +V ++L+D Y K G +E+AR VFD++  +  V W  +++ Y        ++ +F  M
Sbjct: 162 QDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQM 221

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R   +  D +  SS++++C  L   + G+QIH  V+++  ++DV V   L+D Y K   +
Sbjct: 222 RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 281

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
               ++FD M  KN++SW TM+ G+ QN    EA+KL  +M +  + PD     S+L+SC
Sbjct: 282 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 341

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
           GS     + RQVHAY IK  +++   ++N LI+ Y+K   +  A + F  + E +++++ 
Sbjct: 342 GSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYN 401

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           ++I  Y+      E++E+F +M      P  + F+ +L
Sbjct: 402 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 439



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 207/379 (54%), Gaps = 5/379 (1%)

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           + N+R     F +LL+  +  + I   + +H  I+  G   + F+++ L+++  K   V+
Sbjct: 20  IPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVD 79

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSC 273
           +AR VFD++  ++L+ W+ MVS Y+     + A+ VF +L R  G   + F  +S++ +C
Sbjct: 80  NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 139

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
             LG  + G Q+HG V++  FD DV V TSL+D Y+KNGNI++A  VFD ++ K  V+W 
Sbjct: 140 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 199

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           T++ G+ + G    +++L   M + +  PD   ++S+LS+C  L      +Q+HAY ++ 
Sbjct: 200 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 259

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G +  +S+ N LI+ Y+KC  +    + F  +   ++++WT++I  Y  +    E++++F
Sbjct: 260 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 319

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
            +M     +PD  A   VL++C     + +G R  +      ++  D      L D+  +
Sbjct: 320 GEMNRLGWKPDGFACTSVLTSCGSREALEQG-RQVHAYTIKANLESDEFVKNGLIDMYAK 378

Query: 514 VGLLVEA---YDLLASMPI 529
             LL++A   +D++A   +
Sbjct: 379 SNLLIDAKKVFDVMAEQNV 397


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/576 (33%), Positives = 316/576 (54%), Gaps = 33/576 (5%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISGI 139
           Q KQLH+ I++  L +  SL + +L +Y       D   +F+ +      + W ++I   
Sbjct: 23  QAKQLHAQILRTSLPSP-SLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCY 81

Query: 140 INCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G   +   +F +ML      DH  F S+L++C    D+  G  +H  I+++G G + 
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 198 FVSSALVDLYGKCGFVEDA-----------------------------RRVFDEVLCRDL 228
           +  +AL+++Y K   +E+                              R+VF+ +  RD+
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN ++S  A N + + A+ +   M    ++ D FT SS++       +   G++IHG 
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
            I+  +D DV + +SL+DMYAK   +DD+CRVF  +   + +SWN+++ G  QNG   E 
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           +K  + ML     P+ V+ +SI+ +C  L+     +Q+H Y I++     + I +AL++ 
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 381

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+KCG+I  A   F  ++  D+V+WT++I  YA HG + ++I +F++M    V+P+ +AF
Sbjct: 382 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 441

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VL+ACSH GLV E  +YFN M  DY I+P  EHY  + DLLGRVG L EAY+ ++ M 
Sbjct: 442 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 501

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           IEP        + AC+VH +I LA+  ++KL  ++P     Y L+SN+Y++   W D  +
Sbjct: 502 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 561

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           LR  MRD    K P CSWIEI  ++H FV+ D+SHP
Sbjct: 562 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 597



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 128/213 (60%), Gaps = 2/213 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L + A++  L +GK++H + ++ G    + + + ++ +Y KC   DD  ++F  +  
Sbjct: 240 SSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 299

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + ++WN++I+G +  G       +F++ML+  ++ +H++F+S++ AC     + +G++L
Sbjct: 300 HDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQL 359

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H +I++  F  N F++SALVD+Y KCG +  AR +FD++   D+V W  M+  YAL+   
Sbjct: 360 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA 419

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
             AI++F  M +EG+K +Y  F +++ +C   G
Sbjct: 420 YDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 452



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  +   A    L  GKQLH +I++      + + + ++ +Y KC        +FD
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFD 396

Query: 123 EMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-E 179
           +M + ++V+W  +I G    G   +    F+RM ++ V+ +++ F ++L AC  A  + E
Sbjct: 397 KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDE 456

Query: 180 VGRRLHSFI--LKVGFGLNCFVSSALVDLYGKCGFVEDA 216
             +  +S     ++  GL  +  +A+ DL G+ G +E+A
Sbjct: 457 AWKYFNSMTQDYRIIPGLEHY--AAVADLLGRVGRLEEA 493


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 206/592 (34%), Positives = 319/592 (53%), Gaps = 38/592 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           + Q KQ+ S ++  GL       +  L  +     + D++    +    R  N  +WN  
Sbjct: 19  ISQLKQIQSQMVLTGLIED-GFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVA 77

Query: 136 ISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           I G +   N    V  Y R +  D  + D+ T+  L +AC +   I +G  +   +L +G
Sbjct: 78  IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLG 137

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  + FVS+A++ L   CG ++ AR++FD+   RDLV WN M++ Y        A+  + 
Sbjct: 138 FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYR 197

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M++EG+K D  T   +V+SC  L    LGR+ H  + +    L V +A +L+DMY K G
Sbjct: 198 EMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCG 257

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNG----------------------------- 343
           N++ A ++FD MT K +VSW TMVVG+ Q+G                             
Sbjct: 258 NLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVH 317

Query: 344 --DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
              G+EA+ L  +M   +  PDEVT+ S LS+C  L        +H Y  K+ +   +++
Sbjct: 318 ANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVAL 377

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
             ALI+ Y+KCG I  A+Q F  +   + +TWT+II   A HG +  +I  F +M+ ++V
Sbjct: 378 GTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSV 437

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD + FL +LSAC HGGLV EG +YF+ M S +++ P  +HY+C+ DLLGR GLL EA 
Sbjct: 438 MPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAE 497

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           +L+ SMPIE  +   GA   AC++HG++ + + AA KLL+++P     Y L++N+Y    
Sbjct: 498 ELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAE 557

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            W +  + RK+MR     K PGCS IE+ G ++ F+  D+SHPQ+  +Y  L
Sbjct: 558 MWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECL 609



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 223/470 (47%), Gaps = 42/470 (8%)

Query: 17  RPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIH-------ESTHSAHSFYSQA 69
           R L Y T  L+  +     +     R  L S+      +        + T   +  Y   
Sbjct: 54  RDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLL 113

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            K  A+   ++ G ++  H++ LG  + + + N V+H+ V C   D   K+FD+  VR++
Sbjct: 114 FKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDL 173

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+G +  G       ++R M ++ ++ D +T   ++ +C Q +D+++GR  H +
Sbjct: 174 VSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCY 233

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDAR------------------------------ 217
           I + G  L   +++AL+D+Y KCG +E AR                              
Sbjct: 234 IEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMA 293

Query: 218 -RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
            ++FDE+  +D+V WN M+  Y     G  A+A+FN M+   +  D  T  S +++C  L
Sbjct: 294 WKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQL 353

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+  +G  IH  + K    L+V + T+L+DMYAK G I  A +VF  +  +N ++W  ++
Sbjct: 354 GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAII 413

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA-YAIKNGV 395
            G   +G+   A+    +M+  S  PDEVT   +LS+C    +  E R+  +  + K  +
Sbjct: 414 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 473

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
              L   + +++   + G +  A +   S+  E D V W ++  A   HG
Sbjct: 474 SPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHG 523


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 199/572 (34%), Positives = 311/572 (54%), Gaps = 2/572 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G LQ+G QLHS++ K G+ +   ++  +L +YVKC   +    +F+    
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDR 307

Query: 127 RNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N+V WN ++   G IN        F +M    +R +  T+  +LR C    +I++G ++
Sbjct: 308 TNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI 367

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS  +K GF  + +VS  L+D+Y K G++E ARRV + +  +D+V W  M++ Y  +   
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+A F  M+  G+  D    +S ++ C  + + + G QIH  +    +  DV +  +L
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNAL 487

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V++YA+ G I +A   F+ M  K+ ++ N +V GF Q+G   EA+K+   M Q     + 
Sbjct: 488 VNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T  S LS+  +L+   + +Q+HA  IK G      + NALI+ Y KCGS   A   F  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + E + V+W +II + + HG   E++++F++M    ++P+ + F+ VL+ACSH GLV EG
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L YF  M  +Y I P  +HY C+ D+ GR G L  A   +  MPI   +      + ACK
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH +I + ++AA+ LLELEP    +Y L+SN YA    W +  ++RKMMRD    K PG 
Sbjct: 728 VHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGR 787

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           SWIE+   +H F   DR HP A  +Y  L  +
Sbjct: 788 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVI 819



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 256/484 (52%), Gaps = 6/484 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K     QG+ +H+   K G C+++ + N V+ +Y++C +F   E++F +M  
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ VT+NTLISG   C  G +    F  M    +  D +T +SLL AC    D++ G +L
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCL 243
           HS++ K G   +  +  +L+DLY KCG VE A  +F+     ++VLWN+M+  +  +N L
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDL 326

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M+  G++ + FT+  ++ +C       LG QIH L +K  F+ D+ V+  
Sbjct: 327 AK-SFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K G ++ A RV + +  K+VVSW +M+ G+ Q+   ++A+   ++M +    PD
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + LAS +S C  ++   +  Q+HA    +G    +SI NAL+N Y++CG I  A   F 
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++  D +T   ++  +A  GL +E+++VF +M    V+ +   F+  LSA ++   + +
Sbjct: 506 EMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +    +I   H   ++E    L  L G+ G   +A    + M  E    +    I +C
Sbjct: 566 GKQIHARVIKTGHSF-ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623

Query: 544 KVHG 547
             HG
Sbjct: 624 SQHG 627



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 227/450 (50%), Gaps = 5/450 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN-- 141
           ++H+  +  GL     + N ++ +Y K        ++F+E+  R+ V+W  ++SG     
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            G      +R+M    V       +S+L +C +A+    GR +H+   K GF    FV +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           A++ LY +CG    A RVF ++  RD V +N ++S +A    G+ A+ +F  M+  G+  
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T SSL+ +C +LG  + G Q+H  + K     D ++  SL+D+Y K G+++ A  +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +     NVV WN M+V FGQ  D  ++ +L   M      P++ T   IL +C       
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+ ++K G ++ + +   LI+ YSK G +  A +    +KE D+V+WTS+I  Y 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   K+++  F++M    + PD+I     +S C+    + +GL+ +  + +S Y    D
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS--GD 480

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
              +  L +L  R G + EA+     M ++
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEMELK 510



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 1/318 (0%)

Query: 160 LDHITFNSLLRACV-QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           L  + F   LRAC       +V   +H+  +  G G    V + L+DLY K G V  ARR
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARR 98

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+E+  RD V W  M+S YA N LG+ A+ ++  M   G+    +  SS+++SC     
Sbjct: 99  VFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR IH    K  F  ++ V  +++ +Y + G+   A RVF  M  ++ V++NT++ G
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISG 218

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q G G  A+++  +M      PD VT++S+L++C SL    +  Q+H+Y  K G+ + 
Sbjct: 219 HAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSD 278

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             +E +L++ Y KCG +  AL  F S    ++V W  ++ A+       +S E+F +M +
Sbjct: 279 YIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQA 338

Query: 459 HAVRPDSIAFLEVLSACS 476
             +RP+   +  +L  C+
Sbjct: 339 AGIRPNQFTYPCILRTCT 356



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 6/203 (2%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H+  +F S AL  SA    ++QGKQ+H+ ++K G   +  + N ++ +Y KC +F+D + 
Sbjct: 545 HNVFTFVS-ALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADD 177
            F EM  RN V+WNT+I+     G  +     F +M  + ++ + +TF  +L AC     
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 178 IEVG-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
           +E G     S   + G        + ++D++G+ G ++ A++  +E+ +  D ++W  ++
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 236 S-CYALNCLGDGAIAVFNLMRLE 257
           S C     +  G  A  +L+ LE
Sbjct: 724 SACKVHKNIEVGEFAAKHLLELE 746


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 203/568 (35%), Positives = 318/568 (55%), Gaps = 6/568 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--VR 127
           L  +AK   L+   Q+HS ++       L+  N +L +Y KC +      LF+       
Sbjct: 104 LNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPST 163

Query: 128 NIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+VTW TLI+ +   N       +F RM    +  +H TF+++L AC  A  +  G+++H
Sbjct: 164 NVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIH 223

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + I K  F  + FV++AL+D+Y KCG +  A  VFDE+  R+LV WN M+  +  N L  
Sbjct: 224 ALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYG 283

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            AI VF    +  +  D  + SS++++C  L     G+Q+HG ++K+     V V  SLV
Sbjct: 284 RAIGVFR--EVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLV 341

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K G  +DA ++F G   ++VV+WN M++G  +  +  +A    + M++    PDE 
Sbjct: 342 DMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEA 401

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           + +S+  +  S++   +   +H++ +K G      I ++L+  Y KCGS+  A Q F   
Sbjct: 402 SYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRET 461

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           KE ++V WT++I  +  HG + E+I++FE+ML+  V P+ I F+ VLSACSH G + +G 
Sbjct: 462 KEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGF 521

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           +YFN M + ++I P  EHY C+ DLLGRVG L EA   + SMP EP S   GA +GAC  
Sbjct: 522 KYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGK 581

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H ++ + +  AE+L +LEP  P NY L+SN+Y       +   +R++M  N   K  GCS
Sbjct: 582 HANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCS 641

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           WI++      F ++DRSH +   +Y ML
Sbjct: 642 WIDVKNRTFVFNANDRSHSRTQEIYGML 669



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 210/419 (50%), Gaps = 32/419 (7%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L   A    L +G+Q+H+ I K    N   +   +L +Y KC +    E +FD
Sbjct: 200 HFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFD 259

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           EM  RN+V+WN++I G +     G     FR +L  ++  D ++ +S+L AC    +++ 
Sbjct: 260 EMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVL--SLGPDQVSISSVLSACAGLVELDF 317

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV-SCYA 239
           G+++H  I+K G     +V ++LVD+Y KCG  EDA ++F     RD+V WNVM+  C+ 
Sbjct: 318 GKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFR 377

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                + A   F  M  EG++ D  ++SSL ++  ++ +   G  IH  V+K     +  
Sbjct: 378 CRNF-EQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSR 436

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +++SLV MY K G++ DA +VF      NVV W  M+  F Q+G   EA+KL  +ML   
Sbjct: 437 ISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEG 496

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA------------LIN 407
             P+ +T  S+LS+C            H   I +G + F S+ N             +++
Sbjct: 497 VVPEYITFVSVLSACS-----------HTGKIDDGFKYFNSMANVHNIKPGLEHYACMVD 545

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
              + G +  A +   S+  EPD + W +++GA   H   +   EV E++    + PD+
Sbjct: 546 LLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFK--LEPDN 602



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 189/360 (52%), Gaps = 7/360 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LC 225
           LL    +   ++   ++HS ++      +    + L+ LY KCG +     +F+      
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
            ++V W  +++  + +     A+  FN MR  G+  ++FTFS+++ +C        G+QI
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L+ K  F  D  VAT+L+DMYAK G++  A  VFD M  +N+VSWN+M+VGF +N   
Sbjct: 223 HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLY 282

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             A+ + R++L  S  PD+V+++S+LS+C  L      +QVH   +K G+   + ++N+L
Sbjct: 283 GRAIGVFREVL--SLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSL 340

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWT-SIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           ++ Y KCG    A + F    + D+VTW   I+G +      +++   F+ M+   V PD
Sbjct: 341 VDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNF-EQACTYFQAMIREGVEPD 399

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
             ++  +  A +    +++G    + ++   H+  +S   + L  + G+ G +++AY + 
Sbjct: 400 EASYSSLFHASASIAALTQGTMIHSHVLKTGHV-KNSRISSSLVTMYGKCGSMLDAYQVF 458



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E      + YS     SA    L QG  +HSH++K G      + + ++ +Y KC + 
Sbjct: 392 IREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSM 451

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
            D  ++F E +  N+V W  +I+      C       F  ML + V  ++ITF S+L AC
Sbjct: 452 LDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSAC 511

Query: 173 VQADDIEVGRRLHSFILKV---GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDL 228
                I+ G +  + +  V     GL  +  + +VDL G+ G +E+A R  + +    D 
Sbjct: 512 SHTGKIDDGFKYFNSMANVHNIKPGLEHY--ACMVDLLGRVGRLEEACRFIESMPFEPDS 569

Query: 229 VLWNVMV-SCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++W  ++ +C     +  G      L +LE    G+Y   S++    G L  +   R++ 
Sbjct: 570 LVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLM 629

Query: 287 GL 288
           G+
Sbjct: 630 GI 631



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 6/174 (3%)

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           Q S  PD   L  +L++   L       Q+H+  +     A L+  N L+  Y+KCGSI 
Sbjct: 93  QFSSVPD---LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIH 149

Query: 417 GALQCFGSVKEP--DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
             L  F +   P  ++VTWT++I   +      +++  F +M +  + P+   F  +L A
Sbjct: 150 HTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPA 209

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           C+H  L+SEG +  + +I  +  L D    T L D+  + G ++ A ++   MP
Sbjct: 210 CAHAALLSEG-QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMP 262


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 311/558 (55%), Gaps = 4/558 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +G+QLH++  KLG  +   ++  +L++Y KC   +     F E  V N+V WN ++
Sbjct: 403 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462

Query: 137 --SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              G+++   N    FR+M ++ +  +  T+ S+L+ C++  D+E+G ++HS I+K  F 
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 522

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           LN +V S L+D+Y K G ++ A  +      +D+V W  M++ Y      D A+  F  M
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 582

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G++ D    ++ V++C  L + K G+QIH       F  D+    +LV +Y++ G I
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +++   F+   A + ++WN +V GF Q+G+  EA+++   M +     +  T  S + + 
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
              +   + +QVHA   K G  +   + NALI+ Y+KCGSI+ A + F  V   + V+W 
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +II AY+ HG   E+++ F++M+   VRP+ +  + VLSACSH GLV +G+ YF  M S+
Sbjct: 763 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y + P  EHY C+ D+L R GLL  A + +  MPI+P +      + AC VH ++ + ++
Sbjct: 823 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 882

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA  LLELEP     Y L+SN+YA  + W      R+ M++    K PG SWIE+   IH
Sbjct: 883 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942

Query: 615 TFVSSDRSHPQA--VHMY 630
           +F   D++HP A  +H Y
Sbjct: 943 SFYVGDQNHPLADEIHEY 960



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 148/486 (30%), Positives = 242/486 (49%), Gaps = 8/486 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L    K   L+ G+QLH  ++KLG  +   + N ++ +Y         E +F  M 
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ VT+NTLI+G+  C  G      F+RM LD +  D  T  SL+ AC     +  G++
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH++  K+GF  N  +  AL++LY KC  +E A   F E    ++VLWNVM+  Y L   
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M++E +  + +T+ S++ +C  LG  +LG QIH  +IK +F L+  V + 
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G +D A  +      K+VVSW TM+ G+ Q     +A+   R ML      D
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 590

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           EV L + +S+C  L    E +Q+HA A  +G  + L  +NAL+  YS+CG I  +   F 
Sbjct: 591 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE 650

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             +  D + W +++  +   G ++E++ VF +M    +  ++  F   + A S    + +
Sbjct: 651 QTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ 710

Query: 484 GLRYFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           G +   ++    +   DSE   C  L  +  + G + +A      +  +    +  A I 
Sbjct: 711 GKQVHAVITKTGY---DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV-SWNAIIN 766

Query: 542 ACKVHG 547
           A   HG
Sbjct: 767 AYSKHG 772



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 234/453 (51%), Gaps = 8/453 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +G++LHS I+KLGL +   L  ++   Y+         K+FDEM  R I TWN +I
Sbjct: 99  GSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMI 158

Query: 137 SGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGF 193
             +   N  G V   F RM+ +NV  +  TF+ +L AC       +V  ++H+ IL  G 
Sbjct: 159 KELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGL 218

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             +  V + L+DLY + GFV+ ARRVFD +  +D   W  M+S  + N     AI +F  
Sbjct: 219 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 278

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G+    + FSS++++C  + S ++G Q+HGLV+K  F  D  V  +LV +Y   GN
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A  +F  M+ ++ V++NT++ G  Q G G +A++L + M      PD  TLAS++ +
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C +       +Q+HAY  K G  +   IE AL+N Y+KC  I  AL  F   +  ++V W
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             ++ AY      + S  +F +M    + P+   +  +L  C   G +  G +  + +I 
Sbjct: 459 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 518

Query: 494 DYHILPDSEHYTC--LTDLLGRVGLLVEAYDLL 524
               L     Y C  L D+  ++G L  A+D+L
Sbjct: 519 TNFQL---NAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 35/327 (10%)

Query: 258 GMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           G++ ++ T   L+  C  T GS   GR++H  ++K   D +  ++  L D Y   G++  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +VFD M  + + +WN M+          E   L   M+  +  P+E T + +L +C  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 377 LSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            S++ +   Q+HA  +  G++    + N LI+ YS+ G +  A + F  ++  D  +W +
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEG 484
           +I   + +    E+I +F  M    + P   AF  VLSAC            HG ++  G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 485 LR------------YFNL--MISDYHILP-----DSEHYTCLTDLLGRVGLLVEAYDLLA 525
                         YF+L  +IS  HI       D+  Y  L + L + G   +A +L  
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 526 SM---PIEPRSDTLGAFIGACKVHGSI 549
            M    +EP S+TL + + AC   G++
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTL 405



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 6/225 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  A+K +++   ++QGKQ+H+ I K G  ++  + N ++ +Y KC +  D EK F E+ 
Sbjct: 695 FGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVS 754

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
            +N V+WN +I+       G      F +M+  NVR +H+T   +L AC     ++ G  
Sbjct: 755 TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 814

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS-CYAL 240
              S   + G          +VD+  + G +  A+    E+  + D ++W  ++S C   
Sbjct: 815 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874

Query: 241 NCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
             +  G  A  +L+ LE      Y   S+L        +  L RQ
Sbjct: 875 KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQ 919


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 183/472 (38%), Positives = 285/472 (60%), Gaps = 1/472 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   +N+LL+ C Q   ++ G+ +H  +L   F  +  + ++L+ +Y +CG +E ARR+F
Sbjct: 73  DRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLF 132

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  RD+V W  M++ YA N     A+ +F  M  +G + + FT SSLV  CG + S  
Sbjct: 133 DEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYN 192

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GRQIH    K     +V V +SLVDMYA+ G + +A  VFD +  KN VSWN ++ G+ 
Sbjct: 193 CGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYA 252

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           + G+G EA+ L   M +  + P E T +++LSSC S+    + + +HA+ +K+  +    
Sbjct: 253 RKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGY 312

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N L++ Y+K GSI  A + F  + + D+V+  S++  YA HGL KE+ + F++M+   
Sbjct: 313 VGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFG 372

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + P+ I FL VL+ACSH  L+ EG  YF LM   Y+I P   HY  + DLLGR GLL +A
Sbjct: 373 IEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLDQA 431

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
              +  MPIEP     GA +GA K+H +  +  +AA+++ EL+PS P  + L++N+YAS 
Sbjct: 432 KSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASA 491

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
             W DVA++RK+M+D+   K P CSW+E+   +H FV++D +HPQ   ++ M
Sbjct: 492 GRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKM 543



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 227/413 (54%), Gaps = 10/413 (2%)

Query: 41  DRSVLSSQLRNSGTIH-------ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           DR++L   L +   +H        S     + Y+  LK   + G L++GK +H H++   
Sbjct: 45  DRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSN 104

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFR 151
             + L +QN +L +Y +C + +   +LFDEM  R++V+W ++I+G    +   +    F 
Sbjct: 105 FKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFP 164

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           RML D    +  T +SL++ C        GR++H+   K G   N FV S+LVD+Y +CG
Sbjct: 165 RMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCG 224

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
           ++ +A  VFD++ C++ V WN +++ YA    G+ A+A+F  M+ EG +   FT+S+L++
Sbjct: 225 YLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLS 284

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           SC ++G  + G+ +H  ++K S  L   V  +L+ MYAK+G+I DA +VFD +   +VVS
Sbjct: 285 SCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVS 344

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
            N+M++G+ Q+G G+EA +   +M++    P+++T  S+L++C    +  E +       
Sbjct: 345 CNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMR 404

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           K  ++  +S    +++   + G +  A      +  EP +  W +++GA   H
Sbjct: 405 KYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMH 457



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 134/238 (56%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            + V +L+    ++ D   +++L+  C  LG  K G+ +H  V+  +F  D+++  SL+ 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYA+ G+++ A R+FD M  +++VSW +M+ G+ QN    +A+ L   ML     P+E T
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L+S++  CG ++     RQ+HA   K G  + + + ++L++ Y++CG +  A+  F  + 
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             + V+W ++I  YA  G  +E++ +F +M     RP    +  +LS+CS  G + +G
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 324/565 (57%), Gaps = 3/565 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q  Q+ + I+KLG  ++L + N ++  Y K    D   +LF EM   + V++N +I+G  
Sbjct: 167 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYS 226

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        F  M    ++    TF ++L A +  DDI +G+++HSF++K  F  N F
Sbjct: 227 KDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVF 286

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           VS+AL+D Y K   V DAR++FDE+  +D V +NV++S YA +     A  +F  ++   
Sbjct: 287 VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTA 346

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
                F F+++++        ++GRQIH   I  + D ++LV  SLVDMYAK G  ++A 
Sbjct: 347 FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAE 406

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F  +T ++ V W  M+  + Q G   E ++L   M Q S   D+ T AS+L +  S++
Sbjct: 407 MIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIA 466

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                +Q+H++ IK+G  + +   +AL++ Y+KCGSI  A+Q F  + + ++V+W ++I 
Sbjct: 467 SLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMIS 526

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           AYA +G ++ +++ F++M+   ++PDS++FL VLSACSH GLV EGL +FN M   Y + 
Sbjct: 527 AYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLD 586

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY  + D+L R G   EA  L+A MPI+P      + + AC++H +  LA+ AA++
Sbjct: 587 PRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQ 646

Query: 559 LLELEPSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           L  +E  +    Y  +SN+YA+   W +V+++ K MRD    K+P  SW+EI  E H F 
Sbjct: 647 LFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFS 706

Query: 618 SSDRSHPQAVHMYAMLCTVFGLMEE 642
           ++DR HPQ   +   +  +   MEE
Sbjct: 707 ANDRCHPQIEEIRKKIDMLTKTMEE 731



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 234/462 (50%), Gaps = 19/462 (4%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K G L Q +QL     K+   N +S  N ++  YVK     +  KLFD M  R  VTW  
Sbjct: 64  KNGELSQARQLFE---KMPHKNTVS-TNMMISGYVKSGNLGEARKLFDGMVERTAVTWTI 119

Query: 135 LISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL---HSFIL 189
           LI G   +N        F +M       D++TF +LL  C   +  E+G ++    + I+
Sbjct: 120 LIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC---NGHEMGNQITQVQTQII 176

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           K+G+     V + LVD Y K   ++ A ++F E+   D V +N M++ Y+ + L + A+ 
Sbjct: 177 KLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVN 236

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK--LGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +F  M+  G+K   FTF++++  C  +G     LG+QIH  VIK +F  +V V+ +L+D 
Sbjct: 237 LFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDF 294

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K+ ++ DA ++FD M  ++ VS+N ++ G+  +G  + A  L R++   +F   +   
Sbjct: 295 YSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPF 354

Query: 368 ASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           A++L S  S ++  E  RQ+HA  I     + + + N+L++ Y+KCG    A   F ++ 
Sbjct: 355 ATML-SIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLT 413

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
               V WT++I AY   G  +E +++F KM   +V  D   F  +L A +    +S G +
Sbjct: 414 HRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ 473

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             + +I     + +    + L D+  + G + +A      MP
Sbjct: 474 LHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 514



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 163/325 (50%), Gaps = 12/325 (3%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+Q+H+  +     +++ + N ++ +Y KC  F++ E +F  +  R+ V W  +IS  
Sbjct: 368 EMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAY 427

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
           +  G        F +M   +V  D  TF SLLRA      + +G++LHSFI+K GF  N 
Sbjct: 428 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV 487

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F  SAL+D+Y KCG ++DA + F E+  R++V WN M+S YA N   +  +  F  M L 
Sbjct: 488 FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 547

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNID 315
           G++ D  +F  ++++C   G  + G   H   + Q + LD       S+VDM  ++G  +
Sbjct: 548 GLQPDSVSFLGVLSACSHSGLVEEGLW-HFNSMTQIYKLDPRREHYASVVDMLCRSGRFN 606

Query: 316 DACRVFDGMTAK-NVVSWNTMVVG--FGQNGD-GREAVKLLRDMLQGSFCPDEVTLASIL 371
           +A ++   M    + + W++++      +N +  R A   L +M +       V +++I 
Sbjct: 607 EAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIY 666

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQ 396
           ++ G         +VH      GV+
Sbjct: 667 AAAGQWE---NVSKVHKAMRDRGVK 688



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 33/227 (14%)

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           I   ++K  FD D   +   V  + KNG +  A ++F+ M  KN VS N M+ G+ ++G+
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 345 GREAVKLLRDMLQ----------GSFC---------------------PDEVTLASILSS 373
             EA KL   M++          G +                      PD VT  ++LS 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C    +  +  QV    IK G  + L + N L+++Y K   +  A Q F  + E D V++
Sbjct: 159 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSY 218

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            ++I  Y+  GL ++++ +F +M +  ++P    F  VL  C++ GL
Sbjct: 219 NAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 41/269 (15%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L+ SA    L  GKQLHS I+K G  + +   + +L VY KC +  D  + F EM 
Sbjct: 455 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 514

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RNIV+WN +IS     G        F+ M+L  ++ D ++F  +L AC  +  +E G  
Sbjct: 515 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW 574

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYAL 240
             + + ++ + L+      +++VD+  + G   +A ++  E+ +  D ++W         
Sbjct: 575 HFNSMTQI-YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMW--------- 624

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                                     SS++N+C    + +L R+    +       D   
Sbjct: 625 --------------------------SSVLNACRIHKNQELARRAADQLFNMEELRDAAP 658

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
             ++ ++YA  G  ++  +V   M  + V
Sbjct: 659 YVNMSNIYAAAGQWENVSKVHKAMRDRGV 687


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 327/583 (56%), Gaps = 9/583 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK+    G L   + +H + +K+GL   + +   ++++Y KC    D   LFD MR R++
Sbjct: 190 LKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDV 249

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQA--DDIEVGRRLH 185
           V WN ++ G +  G     +  F       +R D  +   +L  C+ A  DD+E+G+++H
Sbjct: 250 VLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVH 309

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +K G   +  V+++LV++Y K G    AR VF+++   DL+ WN M+S  A + L +
Sbjct: 310 GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 369

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLV-----NSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
            ++ +F  +  EG+K D+FT +S+       +CG L     G+QIH   IK  FD D+ V
Sbjct: 370 ESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 429

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            + ++DMY K G++ +A  VF+ ++A + V+W +M+ G   NG+  +A+++   M Q   
Sbjct: 430 NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRV 489

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PDE T A+++ +   ++   + RQ+HA  IK    +   +  +L++ Y+KCG+I  A +
Sbjct: 490 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYR 549

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   ++  W +++   A HG ++E++ +F+ M SH + PD ++F+ +LSACSH GL
Sbjct: 550 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGL 609

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
            SE   Y + M +DY I P+ EHY+CL D LGR GL+ EA  ++ +MP +  +    A +
Sbjct: 610 TSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALL 669

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC++ G +   K  A +L  LEP     Y L+SN+YA+   W DV   RKMM+     K
Sbjct: 670 GACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKK 729

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            PG SWI++   +H FV  DRSHPQA  +Y  +  +   + E+
Sbjct: 730 DPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIRED 772



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/549 (28%), Positives = 258/549 (46%), Gaps = 30/549 (5%)

Query: 9   PIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQ 68
           P   V F R     +  L  NQ+  + N Q+H      S   N+       H    F   
Sbjct: 12  PQLFVKFSRHTE--SVVLKGNQSNAMRNVQRHFHKTTISPFSNTLPTFLYLHFTSLFSPF 69

Query: 69  A-------------LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           +             L+ +     L  GK  H+ I+  G      L N +L +Y KC +  
Sbjct: 70  SSFSHSSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLS 129

Query: 116 DMEKLFDEMRVRNIVTWNTLI----SGIINCGGNVTP---YFRRMLLDNVRLDHITFNSL 168
              ++FD    R++VTWN ++    + + +  GN       FR +         +T   +
Sbjct: 130 SARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPV 189

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L+ C+ +  +     +H + +K+G   + FVS ALV++Y KCG + DAR +FD +  RD+
Sbjct: 190 LKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDV 249

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS--KLGRQIH 286
           VLWN+M+  Y    L   A  +F+     G++ D F+   ++N C   G+   +LG+Q+H
Sbjct: 250 VLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVH 309

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           G+ +K   D DV VA SLV+MY+K G    A  VF+ M   +++SWN+M+    Q+    
Sbjct: 310 GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 369

Query: 347 EAVKLLRDMLQGSFCPDEVTLASIL-----SSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           E+V L  D+L     PD  TLASI       +CG L +  + +Q+HA+AIK G  + L +
Sbjct: 370 ESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 429

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            + +++ Y KCG +  A   F  +  PD V WTS+I     +G   +++ ++ +M    V
Sbjct: 430 NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRV 489

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD   F  ++ A S    + +G R  +  +     + D    T L D+  + G + +AY
Sbjct: 490 MPDEYTFATLIKASSCVTALEQG-RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 548

Query: 522 DLLASMPIE 530
            L   M + 
Sbjct: 549 RLFKKMNVR 557



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  +K S+    L+QG+QLH++++KL   +   +   ++ +Y KC   +D  +LF +M 
Sbjct: 496 FATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMN 555

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGR 182
           VRNI  WN ++ G+   G        F+ M    +  D ++F  +L AC  A    E   
Sbjct: 556 VRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYE 615

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
            LHS     G        S LVD  G+ G V++A +V +
Sbjct: 616 YLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIE 654


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 317/560 (56%), Gaps = 7/560 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           ++H+ ++  G+    +   +++  Y +    +   ++FD+     +  WN +I      G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 144 G--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                   + RM  + VR D  T+  +L+AC ++ D+  G       +  G+G + FV +
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           A+++LY KCG +++A RVFD++  RDLV W  M++  A N     A+ ++  M  + ++G
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D      L+ +C TLG SK+G  IHG +I++   +DV+V TSLVDMYAKNG+++ A  VF
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVF 264

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
             M  KNV+SW+ ++ GF QNG    A++L+ DM    + PD V+L S+L +C  +    
Sbjct: 265 RRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLK 324

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             + VH Y ++      +S   A+I+ YSKCGS++ A   F  +   D ++W +II +Y 
Sbjct: 325 LGKSVHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYG 383

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HG  +E++ +F +M    V+PD   F  +LSA SH GLV +G  +F++M+++Y I P  
Sbjct: 384 IHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSE 443

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           +HY C+ DLL R G + EA +L+ SM  EP      A +  C  HG   + + AA+K+LE
Sbjct: 444 KHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLE 503

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           L P  P  Y+LVSN +A+ R W +VA +RK+M+     KVPG S +E+ G++H F+  D+
Sbjct: 504 LNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDK 563

Query: 622 SHPQAVHMYAMLCTVFGLME 641
           SH    H Y  +  V G ++
Sbjct: 564 SH----HQYEEIMQVLGKLD 579



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 203/396 (51%), Gaps = 13/396 (3%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E      S Y+  LK   +   L+ G++     +  G  + + +   VL++Y KC   D+
Sbjct: 99  EGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDE 158

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
             ++FD+M  R++V W T+I+G+   G        +R+M    V  D +    L++AC  
Sbjct: 159 AMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTT 218

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
               ++G  +H ++++    ++  V ++LVD+Y K G +E A  VF  +L ++++ W+ +
Sbjct: 219 LGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSAL 278

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +S +A N     A+ +   M+  G K D  +  S++ +C  +G  KLG+ +HG ++++  
Sbjct: 279 ISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-L 337

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
             D + +T+++DMY+K G++  A  VFD ++ ++ +SWN ++  +G +G G EA+ L   
Sbjct: 338 HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQ 397

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETR-----QVHAYAIKNGVQAFLSIENALINAY 409
           M + +  PD  T AS+LS+     +  + R      V+ Y I+   + +      +++  
Sbjct: 398 MRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHY----ACMVDLL 453

Query: 410 SKCGSIAGALQCFGS-VKEPDLVTWTSIIGAYAFHG 444
           S+ G +  A +   S + EP +  W +++     HG
Sbjct: 454 SRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHG 489



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 191/383 (49%), Gaps = 3/383 (0%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            SL    + + D     ++H+ ++  G   +   ++ L+  Y + G +E AR+VFD+   
Sbjct: 8   KSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQ 67

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
             +  WN M+  Y+       A+++++ M  EG++ D  T++ ++ +C      + G + 
Sbjct: 68  CGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEET 127

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
               + Q +  DV V  +++++YAK G +D+A RVFD M  +++V W TM+ G  QNG  
Sbjct: 128 WRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQA 187

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           REAV + R M +     D V +  ++ +C +L  S     +H Y I+  +   + ++ +L
Sbjct: 188 REAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSL 247

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+K G +  A   F  +   ++++W+++I  +A +G +  ++++   M S   +PDS
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           ++ + VL ACS  G +  G      ++   H   D    T + D+  + G L  A  +  
Sbjct: 308 VSLVSVLLACSQVGFLKLGKSVHGYIVRRLHF--DCVSSTAVIDMYSKCGSLSFARTVFD 365

Query: 526 SMPIEPRSDTLGAFIGACKVHGS 548
            +     S +  A I +  +HGS
Sbjct: 366 QISFRD-SISWNAIIASYGIHGS 387


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 323/603 (53%), Gaps = 12/603 (1%)

Query: 36  NAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC 95
           N Q++D  ++  Q+  SG   +        +   +K     G +  G QLH H++K G  
Sbjct: 159 NGQENDAIIMYIQMLRSGYFPDQLT-----FGSIIKACCIAGDIDLGGQLHGHVIKSGYD 213

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRM 153
           + L  QN ++ +Y K         +F  +  +++++W ++I+G    G  +     FR M
Sbjct: 214 HHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDM 273

Query: 154 LLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
               V + +   F S+  AC      E GR++     K G G N F   +L D+Y K GF
Sbjct: 274 FRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGF 333

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +  A+R F ++   DLV WN +++  A N   + AI  F  M   G+  D  TF +L+ +
Sbjct: 334 LPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCA 392

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVS 331
           CG+  +   G QIH  +IK   D    V  SL+ MY K  N+ DA  VF  ++   N+VS
Sbjct: 393 CGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVS 452

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYA 390
           WN ++    Q+    EA +L + ML     PD +T+ +IL +C  L +S E   QVH ++
Sbjct: 453 WNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAEL-VSLEVGNQVHCFS 511

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +K+G+   +S+ N LI+ Y+KCG +  A   F S + PD+V+W+S+I  YA  GL +E++
Sbjct: 512 VKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEAL 571

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
            +F  M +  V+P+ + +L VLSACSH GLV EG   +N M  +  I P  EH +C+ DL
Sbjct: 572 NLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDL 631

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           L R G L EA + +     +P        + +CK HG++ +A+ AAE +L+L+PS     
Sbjct: 632 LARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAAL 691

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            L+SN++AS   W +VARLR +M+     KVPG SWIE+  +IH F S D SHPQ  ++Y
Sbjct: 692 VLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQIHVFFSEDSSHPQRGNIY 751

Query: 631 AML 633
            ML
Sbjct: 752 TML 754



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 170/617 (27%), Positives = 284/617 (46%), Gaps = 54/617 (8%)

Query: 20  SYLTPALYQNQTTTITNAQKHDRSVLSS---QLRNSGTIHESTHSAHSFYSQALKVSAKF 76
           +Y    L  N    +   Q+H R  L +    L+NS     S     S Y   +      
Sbjct: 39  NYHGGELSTNSYINLMCKQQHYREALDTFNFHLKNS-----SIQLEPSTYVNLILACTNV 93

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
             L+ GK++H HI+K      L LQN +L++Y KC +  D  K FD M++R++V+W  +I
Sbjct: 94  RSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMI 153

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           SG    G   +    + +ML      D +TF S+++AC  A DI++G +LH  ++K G+ 
Sbjct: 154 SGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYD 213

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +    +AL+ +Y K G +  A  VF  +  +DL+ W  M++ +        A+ +F  M
Sbjct: 214 HHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDM 273

Query: 255 RLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
             +G+ + + F F S+ ++C +L   + GRQI G+  K     +V    SL DMYAK G 
Sbjct: 274 FRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGF 333

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A R F  + + ++VSWN ++     N D  EA+     M+     PD++T  ++L +
Sbjct: 334 LPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCA 392

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP-DLVT 432
           CGS     +  Q+H+Y IK G+    ++ N+L+  Y+KC ++  A   F  + E  +LV+
Sbjct: 393 CGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVS 452

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH--------------- 477
           W +I+ A + H    E+  +F+ ML    +PD+I    +L  C+                
Sbjct: 453 WNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSV 512

Query: 478 -GGLVSE--------------GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
             GLV +              GL      + D    PD   ++ L     + GL  EA +
Sbjct: 513 KSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALN 572

Query: 523 L---LASMPIEPRSDTLGAFIGACKVHGSIGLAK--WAAEKLLELEPSKPVNYALVS--- 574
           L   + ++ ++P   T    + AC     IGL +  W     +E+E   P     VS   
Sbjct: 573 LFRMMRNLGVQPNEVTYLGVLSACS---HIGLVEEGWHLYNTMEIELGIPPTREHVSCMV 629

Query: 575 NVYASERCWFDVARLRK 591
           ++ A   C ++     K
Sbjct: 630 DLLARAGCLYEAENFIK 646


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 318/582 (54%), Gaps = 8/582 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK+ A    L  G+ +H+ +   GL ++      + ++Y KC+   D  ++FD M 
Sbjct: 19  FTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMP 78

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDN--VRLDHITFNSLLRACVQADDIEVG 181
            R+ V WN +++G    G   +      RM  +    R D +T  S+L AC  A  +   
Sbjct: 79  SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHAC 138

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R +H+F L+ G      VS+A++D Y KCG VE AR VFD +  R+ V WN M+  YA N
Sbjct: 139 REVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                A+A+F  M  EG+     +  + + +CG LG     R++H L+++     +V V 
Sbjct: 199 GNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVT 258

Query: 302 TSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            +L+  YAK    D A +VF+ +   K  +SWN M++GF QN    +A +L   M   + 
Sbjct: 259 NALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENV 318

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD  TL S++ +   +S   + R +H Y+I++ +   + +  ALI+ YSKCG ++ A +
Sbjct: 319 RPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARR 378

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F S ++  ++TW ++I  Y  HG  + ++E+FE+M      P+   FL VL+ACSH GL
Sbjct: 379 LFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGL 438

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG +YF  M  DY + P  EHY  + DLLGR G L EA+  + +MPIEP     GA +
Sbjct: 439 VDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAML 498

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GACK+H ++ LA+ +A+ + EL P + V + L++N+YA+   W DVAR+R  M      K
Sbjct: 499 GACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQK 558

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            PG S I++  E+HTF S   +H  A  +YA L     L+EE
Sbjct: 559 TPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAK---LIEE 597


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 342/591 (57%), Gaps = 4/591 (0%)

Query: 49  LRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           LR  G + +++ + +++ +  AL+      F++QG  +H+ ++K      + + N ++ +
Sbjct: 303 LRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAM 362

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y +     +   +F  M   + ++WN+++SG +  G       ++  M     + D +  
Sbjct: 363 YARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAV 422

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S++ A  ++ +   G ++H++ +K G   +  V ++LVD+Y K   ++    +FD++  
Sbjct: 423 ISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPD 482

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +D+V W  +++ +A N     A+ +F  ++LEG+  D    SS++ +C  L      ++I
Sbjct: 483 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 542

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  +I++    D+++   +VD+Y + GN+D A R+F+ +  K+VVSW +M+  +  NG  
Sbjct: 543 HSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLA 601

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA++L   M +    PD ++L SILS+  SLS   + +++H + I+ G     S+ + L
Sbjct: 602 NEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTL 661

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y++CG++  +   F  ++  DLV WTS+I AY  HG  + +I++F +M   ++ PD 
Sbjct: 662 VDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDH 721

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           IAF+ VL ACSH GL++EG R+   M  +Y + P  EHY CL DLLGR   L EAY  + 
Sbjct: 722 IAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVK 781

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            M +EP ++   A +GAC++H +  L + AA+KLLE++P  P NY LVSNVYA+ER W D
Sbjct: 782 GMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKD 841

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           V  +R  M+ +   K PGCSWIE+  ++HTF++ D+SHPQ+  +Y+ L  +
Sbjct: 842 VEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQI 892



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 230/430 (53%), Gaps = 6/430 (1%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSH-IMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           S  S    YS  L++      L +G+Q+H+H I    L N + L  +++ +Y KC    D
Sbjct: 109 SQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVD 168

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
            EKLFD M  + I TWN +I   +  G   G++  Y R M +  + LD  TF  +L+AC 
Sbjct: 169 AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY-REMRVSGIPLDACTFPCILKACG 227

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWN 232
              D   G  +H   +K G+    FV++++V +Y KC  +  AR++FD +  + D+V WN
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 287

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M+S Y+ N     A+ +F  M+   +  + +TF + + +C      K G  IH  V+K 
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           S+ ++V VA +L+ MYA+ G + +A  +F  M   + +SWN+M+ GF QNG   EA++  
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            +M      PD V + SI+++      +    Q+HAYA+KNG+ + L + N+L++ Y+K 
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKF 467

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
            S+      F  + + D+V+WT+II  +A +G    ++E+F ++    +  D +    +L
Sbjct: 468 CSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL 527

Query: 473 SACSHGGLVS 482
            ACS   L+S
Sbjct: 528 LACSGLKLIS 537


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 321/560 (57%), Gaps = 6/560 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ-NQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L+V  +   L  G++LH+ ++K G  +++++Q N +L +Y KC   D   ++F E+  ++
Sbjct: 273 LQVCTELAQLNLGRELHAALLKSG--SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKD 330

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            ++WN+++S  +  G       +   ML    + DH    SL  A      +  G+ +H+
Sbjct: 331 YISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHA 390

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           + +K     +  V + L+D+Y KC ++E +  VFD +  +D + W  +++CYA +     
Sbjct: 391 YAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIE 450

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F   + EG+K D     S++ +C  L +  L +Q+H   I+    LD++V   ++D
Sbjct: 451 ALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIID 509

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y + G +  + ++F+ +  K++V+W +M+  +  +G   EA+ L  +M      PD V 
Sbjct: 510 IYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVA 569

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L SIL + G LS   + ++VH + I+       +I ++L++ YS CGS++GAL+ F +VK
Sbjct: 570 LVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVK 629

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V WT++I A   HG  K++I++F++ML   V PD ++FL +L ACSH  LV+EG  
Sbjct: 630 CKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKC 689

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           Y ++M+S Y + P  EHY C+ DLLGR G   EAY+ + SMP++P+S    + +GAC+VH
Sbjct: 690 YLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVH 749

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            +  LA  AA +LLELEP  P NY LVSNV+A    W +   +R  + +    K P CSW
Sbjct: 750 KNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSW 809

Query: 607 IEIAGEIHTFVSSDRSHPQA 626
           IEI   +HTF + D SH  A
Sbjct: 810 IEIGNNVHTFTTRDNSHRDA 829



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 166/583 (28%), Positives = 267/583 (45%), Gaps = 57/583 (9%)

Query: 17  RPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKF 76
           +  S   P++     T++    K      + +L  S T   S    H  Y   L + A  
Sbjct: 14  KKFSTTPPSISPPDPTSLKQLCKEGNLRQALRLLTSQTPGRSPPQEH--YGWVLDLVAAK 71

Query: 77  GFLQQGKQLHSHIMKLGLCNKLS--LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
             + QG Q+H+H +  G        L  ++L +Y KC    D   LFD M  R + +WN 
Sbjct: 72  KAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNA 131

Query: 135 LISGIINCGG--NVTPYFRRMLLD---NVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           LI   ++ G        +R M L     V  D  T  S+L+A     D   G  +H   +
Sbjct: 132 LIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV 191

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDG-- 246
           K G   + FV++AL+ +Y KCG ++ A RVF+ +   RD+  WN M+S     CL +G  
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMIS----GCLQNGMF 247

Query: 247 --AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M+   +  + +T   ++  C  L    LGR++H  ++K   ++++     L
Sbjct: 248 LQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALL 307

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V MY K G +D A RVF  +  K+ +SWN+M+  + QNG   EA++ + +ML+G F PD 
Sbjct: 308 V-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDH 366

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
             + S+ S+ G L      ++VHAYAIK  + +   + N L++ Y KC  I  +   F  
Sbjct: 367 ACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDR 426

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-------- 476
           ++  D ++WT+II  YA      E++E+F +     ++ D +    +L ACS        
Sbjct: 427 MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLA 486

Query: 477 ---HGGLVSEGLRYFNLMISD------------YHIL--------PDSEHYTCLTDLLGR 513
              H   +  GL   +L++ +            YH L         D   +T + +    
Sbjct: 487 KQLHCYAIRNGL--LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYAN 544

Query: 514 VGLLVEAYDLLASMP---IEPRSDTLGAFIGACKVHGSIGLAK 553
            GLL EA  L A M    ++P S  L + +GA  + G   LAK
Sbjct: 545 SGLLNEALVLFAEMQSTDVQPDSVALVSILGA--IGGLSSLAK 585


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 314/562 (55%), Gaps = 2/562 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  LH   +K GL N + + + +L +Y+K        K+FDEM  RN VTW  +I+G++ 
Sbjct: 135 GTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVR 194

Query: 142 CGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G +     YF  M    V  D   +   L+A   +  +  GR +H+  LK GF  N FV
Sbjct: 195 AGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFV 254

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++L  +Y KCG ++     F ++   D+V W  +V+ Y      D  +  F  MR   +
Sbjct: 255 ANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNV 314

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +TFS++++ C      K G Q+H  V+   F   + VA S++ +Y+K G +    +
Sbjct: 315 IPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSK 374

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  M  +++++W+T++  + Q G G EA + L  M      P+E  LAS+LS CGS++I
Sbjct: 375 VFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAI 434

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +Q+HA+ +  G++    + +ALI  Y+KCGSIA A + F    + D+++WT++I  
Sbjct: 435 LEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISG 494

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E+IE+FE +    +RPDS+ F+ VL+ACSH G+V  G  YFN M  DYHI P
Sbjct: 495 YAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITP 554

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ DLL R G L +A  L+ SMPI+         + AC++HG +   + AA ++
Sbjct: 555 SKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEV 614

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+L+P+    +  ++N++A++  W + A +R +M+     K PG S +++   +  FVS 
Sbjct: 615 LKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSG 674

Query: 620 DRSHPQAVHMYAMLCTVFGLME 641
           DRSHPQ   +Y +L  +   ME
Sbjct: 675 DRSHPQGEDIYNILEELASGME 696



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 198/394 (50%), Gaps = 5/394 (1%)

Query: 96  NKLSLQ--NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           NK+ L   N  L + VK     D   LFD++  R+ V+W  +ISG +N          F 
Sbjct: 45  NKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFS 104

Query: 152 RMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           +M L + +R+D    +  L+ C    +   G  LH F +K G   + FV SAL+D+Y K 
Sbjct: 105 KMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKI 164

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +  + +VFDE+  R+ V W  +++        +  +A F+ M    ++ D + ++  +
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +    G+   GR IH   +K+ FD +  VA SL  MY K G +D     F  M   +VV
Sbjct: 225 KASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SW T+V  + Q G     ++  + M   +  P+E T ++++S C + +      Q+HA+ 
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +  G    LS+ N+++  YSKCG +A   + F S+K  D++TW++II AY+  G  +E+ 
Sbjct: 345 LCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAF 404

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           E   +M S   +P+  A   VLS C    ++ +G
Sbjct: 405 EYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG 438



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 170/311 (54%), Gaps = 2/311 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ ALK SA  G L  G+ +H+  +K G      + N +  +Y KC   D     F +MR
Sbjct: 220 YAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMR 279

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W T+++  I  G        F+RM   NV  +  TF++++  C     ++ G +
Sbjct: 280 TLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ +L VGF     V+++++ LY KCG +    +VF  +  RD++ W+ +++ Y+    
Sbjct: 340 LHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGY 399

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+ A    + MR EG K + F  +S+++ CG++   + G+Q+H  V+    +   +V ++
Sbjct: 400 GEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSA 459

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK G+I +A ++F      +++SW  M+ G+ ++G  +EA++L  ++ +    PD
Sbjct: 460 LIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPD 519

Query: 364 EVTLASILSSC 374
            VT   +L++C
Sbjct: 520 SVTFIGVLTAC 530



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 162/334 (48%), Gaps = 20/334 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +   A F  L+ G+QLH+H++ +G  N LS+ N ++ +Y KC     + K+F  M+
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMK 380

Query: 126 VRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+I+TW+T+I+    +  G     Y  RM  +  + +     S+L  C     +E G++
Sbjct: 381 FRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ 440

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ +L VG      V SAL+ +Y KCG + +A ++F +    D++ W  M+S YA +  
Sbjct: 441 LHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGH 500

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI +F  ++  G++ D  TF  ++ +C   G   L     G     S   D  +  S
Sbjct: 501 SQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDL-----GFYYFNSMSKDYHITPS 555

Query: 304 ------LVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD----GREAVKLL 352
                 ++D+  + G + DA  +   M  + + V W+T++     +GD     R A ++L
Sbjct: 556 KEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVL 615

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +  L  +     +TLA+I ++ G    +   R +
Sbjct: 616 K--LDPNCAGTHITLANIFAAKGKWKEAANIRML 647


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 327/560 (58%), Gaps = 6/560 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+++H  ++K+G  + + +   ++H+Y +  A +   K+F +M VR++ +WN +ISG
Sbjct: 163 LADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISG 222

Query: 139 IINCGGNVTPYFR---RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                GNV    R   RM  + V++D +T +S+L  C Q++D+  G  +H +++K G   
Sbjct: 223 FCQ-NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLES 281

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + FVS+AL+++Y K G ++DA+RVFD +  RDLV WN +++ Y  N     A+  F  M 
Sbjct: 282 DVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEML 341

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNI 314
             GM+ D  T  SL +  G L   ++GR +HG V++ +  ++D+++  +LV+MYAK G+I
Sbjct: 342 FVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSI 401

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSS 373
           D A  VF+ + +++V+SWNT++ G+ QNG   EA+     M +G +  P++ T  SIL +
Sbjct: 402 DCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPA 461

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              +    +  ++H   IKN +   + +   LI+ Y KCG +  A+  F  + +   V W
Sbjct: 462 YSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPW 521

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +II +   HG  ++++++F+ M +  V+ D I F+ +LSACSH GLV E    F+ M  
Sbjct: 522 NAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQK 581

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           +Y I P+ +HY C+ DL GR G L +AY+L+++MPI+  +   G  + AC++HG+  L  
Sbjct: 582 EYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGT 641

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
           +A+++LLE++      Y L+SN+YA+   W    ++R + RD    K PG S + +   +
Sbjct: 642 FASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVV 701

Query: 614 HTFVSSDRSHPQAVHMYAML 633
             F + ++SHPQ   +Y  L
Sbjct: 702 EVFYAGNQSHPQCAEIYEEL 721



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 251/471 (53%), Gaps = 10/471 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            KQLH+ ++ LG    + L  Q++ +Y            F  ++ +NI +WN+++S  + 
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 142 CG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G    ++      + L  VR D  TF  +L+AC+   D   G ++H ++LK+GF  + +
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVY 183

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+++L+ LY + G VE A +VF ++  RD+  WN M+S +  N     A+ V + M+ E 
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K D  T SS++  C        G  +H  VIK   + DV V+ +L++MY+K G + DA 
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           RVFDGM  +++VSWN+++  + QN D   A+   ++ML     PD +T+ S+ S  G LS
Sbjct: 304 RVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLS 363

Query: 379 ISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                R VH + ++   ++  + I NAL+N Y+K GSI  A   F  +   D+++W ++I
Sbjct: 364 DRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLI 423

Query: 438 GAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
             YA +GL+ E+I+ +  M     + P+   ++ +L A SH G + +G++    +I +  
Sbjct: 424 TGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCL 483

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            L D    TCL D+ G+ G L +A  L   +P E  S    A I +  +HG
Sbjct: 484 FL-DVFVATCLIDMYGKCGRLEDAMSLFYEIPQET-SVPWNAIISSLGIHG 532



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 221/418 (52%), Gaps = 18/418 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L + A+   +  G  +H +++K GL + + + N ++++Y K     D +++FD M V
Sbjct: 252 SSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEV 311

Query: 127 RNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R++V+WN++I+        VT   +F+ ML   +R D +T  SL     Q  D  +GR +
Sbjct: 312 RDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAV 371

Query: 185 HSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           H F+++  +  ++  + +ALV++Y K G ++ AR VF+++  RD++ WN +++ YA N L
Sbjct: 372 HGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGL 431

Query: 244 GDGAIAVFNLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              AI  +N+M  EG  +  +  T+ S++ +   +G+ + G +IHG +IK    LDV VA
Sbjct: 432 ASEAIDAYNMME-EGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVA 490

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T L+DMY K G ++DA  +F  +  +  V WN ++   G +G G +A++L +DM      
Sbjct: 491 TCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVK 550

Query: 362 PDEVTLASILSSCGSLSISCETR-----QVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            D +T  S+LS+C    +  E +         Y IK  ++ +      +++ + + G + 
Sbjct: 551 ADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHY----GCMVDLFGRAGYLE 606

Query: 417 GALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            A     ++  + D   W +++ A   HG ++      +++L   V  +++ +  +LS
Sbjct: 607 KAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLE--VDSENVGYYVLLS 662



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 175/320 (54%), Gaps = 10/320 (3%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           FN + R+C    +I V ++LH+ +L +G   +  + + LV LY   G +  +   F  + 
Sbjct: 54  FNLVFRSCT---NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 225 CRDLVLWNVMVSCYALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            +++  WN MVS Y       D    V  L+ L G++ D++TF  ++ +C +L     G 
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GE 167

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           ++H  V+K  F+ DV VA SL+ +Y++ G ++ A +VF  M  ++V SWN M+ GF QNG
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           +  EA+++L  M       D VT++S+L  C   +       VH Y IK+G+++ + + N
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSN 287

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALIN YSK G +  A + F  ++  DLV+W SII AY  +     ++  F++ML   +RP
Sbjct: 288 ALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP 347

Query: 464 DSIAFLEVLSACSHGGLVSE 483
           D    L V+S  S  G +S+
Sbjct: 348 D---LLTVVSLASIFGQLSD 364



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 133/266 (50%), Gaps = 8/266 (3%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F+ +  SC  +  +K   Q+H L++      DV++ T LV +YA  G++  +   F  + 
Sbjct: 54  FNLVFRSCTNINVAK---QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETR 384
            KN+ SWN+MV  + + G  R+++  + ++L  S   PD  T   +L +C SL+   +  
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGE 167

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           ++H + +K G +  + +  +LI+ YS+ G++  A + F  +   D+ +W ++I  +  +G
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
              E++ V ++M +  V+ D++    +L  C+    V  G+   +L +  + +  D    
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV-LVHLYVIKHGLESDVFVS 286

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIE 530
             L ++  + G L +A  +   M + 
Sbjct: 287 NALINMYSKFGRLQDAQRVFDGMEVR 312


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/577 (33%), Positives = 333/577 (57%), Gaps = 11/577 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCK-AFDDMEKLFDE 123
           Y+  ++  +   F+  G+     +MK G   + + +   ++ ++VK + +F++  K+FD+
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M   N+VTW  +I+  +  G       +F  M+L     D  T +S+  AC + +++ +G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           ++LHS+ ++ G   +  V  +LVD+Y KC   G V+D R+VFD +    ++ W  +++ Y
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 239 ALNC-LGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             NC L   AI +F+ M  +G ++ ++FTFSS   +CG L   ++G+Q+ G   K+    
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  VA S++ M+ K+  ++DA R F+ ++ KN+VS+NT + G  +N +  +A KLL ++ 
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +        T AS+LS   ++    +  Q+H+  +K G+     + NALI+ YSKCGSI 
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  ++  ++++WTS+I  +A HG +   +E F +M+   V+P+ + ++ +LSACS
Sbjct: 527 TASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLVSEG R+FN M  D+ I P  EHY C+ DLL R GLL +A++ + +MP +      
Sbjct: 587 HVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVW 646

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
             F+GAC+VH +  L K AA K+LEL+P++P  Y  +SN+YA    W +   +R+ M++ 
Sbjct: 647 RTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKER 706

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              K  GCSWIE+  +IH F   D +HP A  +Y  L
Sbjct: 707 NLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 187/336 (55%), Gaps = 13/336 (3%)

Query: 153 MLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           M  D +R +D +TF+SLL++C++A D  +G+ +H+ +++     +  + ++L+ LY K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 212 FVEDARRVFDEVL---CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
               A  VF+ +     RD+V W+ M++CY  N     AI VF      G+  + + +++
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGN-IDDACRVFDGMTA 326
           ++ +C       +GR   G ++K   F+ DV V  SL+DM+ K  N  ++A +VFD M+ 
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            NVV+W  M+    Q G  REA++   DM+   F  D+ TL+S+ S+C  L      +Q+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 387 HAYAIKNGVQAFLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           H++AI++G+     +E +L++ Y+KC   GS+    + F  +++  +++WT++I  Y  +
Sbjct: 292 HSWAIRSGLVD--DVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 444 -GLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSH 477
             L+ E+I +F +M++   V P+   F     AC +
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 155/333 (46%), Gaps = 14/333 (4%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S A K        + GKQ+     K GL +  S+ N V+ ++VK    +D ++ F+
Sbjct: 373 HFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFE 432

Query: 123 EMRVRNIVTWNTLISGIINCGG-NVTPYFRRMLLDNVR---LDHITFNSLLRACVQADDI 178
            +  +N+V++NT + G   C   N    F+ +     R   +   TF SLL        I
Sbjct: 433 SLSEKNLVSYNTFLDG--TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSI 490

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             G ++HS ++K+G   N  V +AL+ +Y KCG ++ A RVF+ +  R+++ W  M++ +
Sbjct: 491 RKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGF 550

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLD 297
           A +      +  FN M  EG+K +  T+ +++++C  +G    G R  + +         
Sbjct: 551 AKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPK 610

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +     +VD+  + G + DA    + M  + +V+ W T +     + +        R +L
Sbjct: 611 MEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKIL 670

Query: 357 QGSFCPDE----VTLASILSSCGSLSISCETRQ 385
           +    P+E    + L++I +  G    S E R+
Sbjct: 671 E--LDPNEPAAYIQLSNIYACAGKWEESTEMRR 701



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 343 GDGREAVKLLRDMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           GD R AV  L  M +    P D VT +S+L SC         + VHA  I+  ++    +
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 402 ENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            N+LI+ YSK G  A A   F +++   + D+V+W++++  Y  +G   ++I+VF + L 
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
             + P+   +  V+ ACS+   V  G      ++   H   D
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESD 201


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 304/544 (55%), Gaps = 5/544 (0%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKA--FDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           ++H+ ++  G    L L  +++ +   C A   D   K+FD+M  R++  WNTLI G  +
Sbjct: 47  RIHALVVTNGCGQNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        +  M    +  D+ TF  ++R+C     +  G+ +H  I+K GF  + FV
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFV 165

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            S+LV +Y + G       VF E++ R++V W  +++ Y  N      + VF  M   G 
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + +  T  S++ +C  L    LG+ IHG  IK   D DV +  +L+ +Y K GN++ A  
Sbjct: 226 QPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARS 285

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FDGM  +N+VSWN M+  + QN  G  AVKL R M       D +T+ S++S+C SL  
Sbjct: 286 LFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGA 345

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               R +H    + G++  +SI NALI+ Y+KCG+I  A + F  +    +V+WTS+IGA
Sbjct: 346 LNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGA 405

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
            A HG  ++++++F +M    V+P+S  F  V +AC H GLV EG ++F  M+ DY I+P
Sbjct: 406 CASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMP 465

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EH  C+ DLLGR G L+EAY+ +  MP+EP     GA +G+C++H ++ LA+  AEKL
Sbjct: 466 GVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKL 525

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
             L+P     Y L+SN+YA    W D ARLRK+M +    K+PG S +E+    HTF+S 
Sbjct: 526 FLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFLSG 585

Query: 620 DRSH 623
            RS 
Sbjct: 586 SRSQ 589



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 226/406 (55%), Gaps = 20/406 (4%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++GK++H +I+K G  + + +Q+ ++ +Y +      ME +F EM VRNIV+W  +I+G
Sbjct: 144 LREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAG 203

Query: 139 IINC-----GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
            +       G  V   FR M+    + + +T  S+L AC   + + +G+ +H + +K+G 
Sbjct: 204 YVQNRYFKEGLGV---FREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGV 260

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             +  +++AL+ LYGKCG VE AR +FD ++ ++LV WN M++ Y  N  G  A+ +F  
Sbjct: 261 DPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRR 320

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M+ E +  DY T  S++++C +LG+   GR +H LV ++  +++V +  +L+DMYAK GN
Sbjct: 321 MQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGN 380

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ID A  VF+ +  ++VVSW +M+     +G G +A+KL   M      P+  T A++ ++
Sbjct: 381 IDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTA 440

Query: 374 CGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-E 427
           C    +  E R+     +  Y+I  GV+        +++   + GS+  A +    +  E
Sbjct: 441 CRHSGLVEEGRKHFESMMRDYSIMPGVEHC----ACMVDLLGRAGSLMEAYEFIDKMPVE 496

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           PD+  W +++G+   H   + +  V EK+    + P ++ F  ++S
Sbjct: 497 PDVSVWGALLGSCRIHSNLELAELVAEKLF--LLDPQTVTFYVLMS 540



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 146/271 (53%), Gaps = 4/271 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A   FL  GK +H + +KLG+   +SL N ++ +Y KC   +    LFD M V+N+
Sbjct: 236 LPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNL 295

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN +I+     N G N    FRRM  + V  D+IT  S++ AC     +  GR +H  
Sbjct: 296 VSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHEL 355

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           + + G  +N  +++AL+D+Y KCG ++ AR VF+ + CR +V W  M+   A +  G+ A
Sbjct: 356 VKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDA 415

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSLVD 306
           + +F+ M+ EG+K + FTF+++  +C   G  + GR+    ++   S    V     +VD
Sbjct: 416 LKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVD 475

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVS-WNTMV 336
           +  + G++ +A    D M  +  VS W  ++
Sbjct: 476 LLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 314/562 (55%), Gaps = 2/562 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  LH   +K GL N + + + +L +Y+K        K+FDEM  RN VTW  +I+G++ 
Sbjct: 135 GTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVR 194

Query: 142 CGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G +     YF  M    V  D   +   L+A   +  +  GR +H+  LK GF  N FV
Sbjct: 195 AGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFV 254

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++L  +Y KCG ++     F ++   D+V W  +V+ Y      D  +  F  MR   +
Sbjct: 255 ANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNV 314

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             + +TFS++++ C      K G Q+H  V+   F   + VA S++ +Y+K G +    +
Sbjct: 315 IPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSK 374

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  M  +++++W+T++  + Q G G EA + L  M      P+E  LAS+LS CGS++I
Sbjct: 375 VFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAI 434

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +Q+HA+ +  G++    + +ALI  Y+KCGSIA A + F    + D+++WT++I  
Sbjct: 435 LEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISG 494

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA HG S+E+IE+FE +    +RPDS+ F+ VL+ACSH G+V  G  YFN M  DYHI P
Sbjct: 495 YAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITP 554

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ DLL R G L +A  L+ SMPI+         + AC++HG +   + AA ++
Sbjct: 555 SKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEV 614

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+L+P+    +  ++N++A++  W + A +R +M+     K PG S +++   +  FVS 
Sbjct: 615 LKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSG 674

Query: 620 DRSHPQAVHMYAMLCTVFGLME 641
           DRSHPQ   +Y +L  +   ME
Sbjct: 675 DRSHPQGEDIYNILEELASGME 696



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 198/394 (50%), Gaps = 5/394 (1%)

Query: 96  NKLSLQ--NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
           NK+ L   N  L + VK     D   LFD++  R+ V+W  +ISG +N          F 
Sbjct: 45  NKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFS 104

Query: 152 RMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           +M L + +R+D    +  L+ C    +   G  LH F +K G   + FV SAL+D+Y K 
Sbjct: 105 KMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKI 164

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +  + +VFDE+  R+ V W  +++        +  +A F+ M    ++ D + ++  +
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +    G+   GR IH   +K+ FD +  VA SL  MY K G +D     F  M   +VV
Sbjct: 225 KASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SW T+V  + Q G     ++  + M   +  P+E T ++++S C + +      Q+HA+ 
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +  G    LS+ N+++  YSKCG +A   + F S+K  D++TW++II AY+  G  +E+ 
Sbjct: 345 LCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAF 404

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           E   +M S   +P+  A   VLS C    ++ +G
Sbjct: 405 EYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG 438



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 170/311 (54%), Gaps = 2/311 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ ALK SA  G L  G+ +H+  +K G      + N +  +Y KC   D     F +MR
Sbjct: 220 YAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMR 279

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W T+++  I  G        F+RM   NV  +  TF++++  C     ++ G +
Sbjct: 280 TLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ +L VGF     V+++++ LY KCG +    +VF  +  RD++ W+ +++ Y+    
Sbjct: 340 LHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGY 399

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+ A    + MR EG K + F  +S+++ CG++   + G+Q+H  V+    +   +V ++
Sbjct: 400 GEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSA 459

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK G+I +A ++F      +++SW  M+ G+ ++G  +EA++L  ++ +    PD
Sbjct: 460 LIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPD 519

Query: 364 EVTLASILSSC 374
            VT   +L++C
Sbjct: 520 SVTFIGVLTAC 530



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 162/334 (48%), Gaps = 20/334 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +   A F  L+ G+QLH+H++ +G  N LS+ N ++ +Y KC     + K+F  M+
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMK 380

Query: 126 VRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+I+TW+T+I+    +  G     Y  RM  +  + +     S+L  C     +E G++
Sbjct: 381 FRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ 440

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ +L VG      V SAL+ +Y KCG + +A ++F +    D++ W  M+S YA +  
Sbjct: 441 LHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGH 500

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI +F  ++  G++ D  TF  ++ +C   G   L     G     S   D  +  S
Sbjct: 501 SQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDL-----GFYYFNSMSKDYHITPS 555

Query: 304 ------LVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD----GREAVKLL 352
                 ++D+  + G + DA  +   M  + + V W+T++     +GD     R A ++L
Sbjct: 556 KEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVL 615

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +  L  +     +TLA+I ++ G    +   R +
Sbjct: 616 K--LDPNCAGTHITLANIFAAKGKWKEAANIRML 647


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 309/560 (55%), Gaps = 5/560 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH   +  G  + ++L N +L+VY KC   +   KLFD M  R++V+WN+LIS     G 
Sbjct: 181 LHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGN 240

Query: 145 --NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
              V    + M L        TF S+L       ++++GR LH  IL+ GF L+  V ++
Sbjct: 241 ICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETS 300

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ +Y K G ++ A R+F+    +D+VLW  M+S    N   D A+AVF  M   G+K  
Sbjct: 301 LIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPS 360

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T +S++ +C  LGS  LG  I G +++Q   LDV    SLV MYAK G++D +  VFD
Sbjct: 361 TATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFD 420

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M  +++VSWN MV G+ QNG   EA+ L  +M   +  PD +T+ S+L  C S      
Sbjct: 421 MMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHL 480

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + +H++ I+NG++  + ++ +L++ Y KCG +  A +CF  +   DLV+W++II  Y +
Sbjct: 481 GKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGY 540

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG  + ++  + K L   ++P+ + FL VLS+CSH GLV +GL  +  M  D+ I PD E
Sbjct: 541 HGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLE 600

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           H+ C+ DLL R G + EAY++      +P  D LG  + AC+ +G+  L    A  +L L
Sbjct: 601 HHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGIILDACRANGNNELGDTIANDILML 660

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
            P    N+  +++ YAS   W +V      MR     K+PG S+I+I G I TF +   S
Sbjct: 661 RPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFIDIHGTITTFFTDHNS 720

Query: 623 HPQAVHMYAMLCTVFGLMEE 642
           HPQ      ++CT+  L +E
Sbjct: 721 HPQ---FQEIVCTLKILRKE 737



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 141/472 (29%), Positives = 239/472 (50%), Gaps = 13/472 (2%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           A++F S  LK  +       G  LH  I+  GL     + + +++ Y K    D   K+F
Sbjct: 61  AYTFPS-LLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVF 119

Query: 122 DEMRVRNIVTWNTLISGIINCGGNVTPYFR---RMLLDNVRLDHITFNSLLRACVQADDI 178
           D M  RN+V W T+I G  +  G V   F     M    ++   +T  SLL    +   +
Sbjct: 120 DYMPERNVVPWTTII-GCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHV 178

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           +    LH   +  GF  +  +S++++++YGKCG +E +R++FD +  RDLV WN ++S Y
Sbjct: 179 QC---LHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAY 235

Query: 239 ALNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           A   +G+    + +   MRL+G +    TF S+++   + G  KLGR +HG +++  F L
Sbjct: 236 AQ--IGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYL 293

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  V TSL+ +Y K G ID A R+F+  + K+VV W  M+ G  QNG   +A+ + R ML
Sbjct: 294 DAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQML 353

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    P   T+AS++++C  L        +  Y ++  +   ++ +N+L+  Y+KCG + 
Sbjct: 354 KFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLD 413

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            +   F  +   DLV+W +++  YA +G   E++ +F +M S    PDSI  + +L  C+
Sbjct: 414 QSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCA 473

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             G +  G ++ +  +    + P     T L D+  + G L  A      MP
Sbjct: 474 STGQLHLG-KWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMP 524



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 188/369 (50%), Gaps = 4/369 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   L V+A  G L+ G+ LH  I++ G      ++  ++ VY+K    D   ++F+   
Sbjct: 263 FGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSS 322

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++V W  +ISG++  G        FR+ML   V+    T  S++ AC Q     +G  
Sbjct: 323 DKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTS 382

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +  +IL+    L+    ++LV +Y KCG ++ +  VFD +  RDLV WN MV+ YA N  
Sbjct: 383 ILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGY 442

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +FN MR +    D  T  SL+  C + G   LG+ IH  VI+      +LV TS
Sbjct: 443 VCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTS 502

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMY K G++D A R F+ M + ++VSW+ ++VG+G +G G  A++     L+    P+
Sbjct: 503 LVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPN 562

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCF 422
            V   S+LSSC    +  +   ++    K+ G+   L     +++  S+ G +  A   +
Sbjct: 563 HVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVY 622

Query: 423 GSVKEPDLV 431
              K PD V
Sbjct: 623 KK-KFPDPV 630



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 228/482 (47%), Gaps = 48/482 (9%)

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
            V   +  ML  +V  D  TF SLL+AC   +   +G  LH  IL  G  L+ +++S+L+
Sbjct: 44  QVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLI 103

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           + Y K GF + AR+VFD +  R++V W  ++ CY+       A ++F+ MR +G++    
Sbjct: 104 NFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSV 163

Query: 265 TFSSLVNSCGTLGSSKLG--RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           T  SL+      G S+L   + +HG  I   F  D+ ++ S++++Y K GNI+ + ++FD
Sbjct: 164 TVLSLL-----FGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFD 218

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M  +++VSWN+++  + Q G+  E + LL+ M    F     T  S+LS   S      
Sbjct: 219 YMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKL 278

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            R +H   ++ G      +E +LI  Y K G I  A + F    + D+V WT++I     
Sbjct: 279 GRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQ 338

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG---LRYF----------- 488
           +G + +++ VF +ML   V+P +     V++AC+  G  + G   L Y            
Sbjct: 339 NGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVAT 398

Query: 489 -NLMISDYHILPDSEHYTCLTDLLGRV---------------GLLVEAYDLLASMPIE-- 530
            N +++ Y      +  + + D++ R                G + EA  L   M  +  
Sbjct: 399 QNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQ 458

Query: 531 -PRSDTLGAFIGACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALV------SNVYASER 581
            P S T+ + +  C   G + L KW    ++   L P   V+ +LV       ++  ++R
Sbjct: 459 TPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQR 518

Query: 582 CW 583
           C+
Sbjct: 519 CF 520



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 30/253 (11%)

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           S N  +      G   + +     ML+     D  T  S+L +C  L++      +H   
Sbjct: 28  SVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRI 87

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           + +G+     I ++LIN Y+K G    A + F  + E ++V WT+IIG Y+  G   E+ 
Sbjct: 88  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAF 147

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSA--------CSHG-----GLVSE-------------- 483
            +F++M    ++P S+  L +L          C HG     G +S+              
Sbjct: 148 SLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKC 207

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI---EPRSDTLGAFI 540
           G   ++  + DY    D   +  L     ++G + E   LL +M +   E    T G+ +
Sbjct: 208 GNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVL 267

Query: 541 GACKVHGSIGLAK 553
                 G + L +
Sbjct: 268 SVAASRGELKLGR 280


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/577 (33%), Positives = 333/577 (57%), Gaps = 11/577 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCK-AFDDMEKLFDE 123
           Y+  ++  +   F+  G+     +MK G   + + +   ++ ++VK + +F++  K+FD+
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M   N+VTW  +I+  +  G       +F  M+L     D  T +S+  AC + +++ +G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           ++LHS+ ++ G   +  V  +LVD+Y KC   G V+D R+VFD +    ++ W  +++ Y
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 239 ALNC-LGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             NC L   AI +F+ M  +G ++ ++FTFSS   +CG L   ++G+Q+ G   K+    
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  VA S++ M+ K+  ++DA R F+ ++ KN+VS+NT + G  +N +  +A KLL ++ 
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +        T AS+LS   ++    +  Q+H+  +K G+     + NALI+ YSKCGSI 
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  ++  ++++WTS+I  +A HG +   +E F +M+   V+P+ + ++ +LSACS
Sbjct: 527 TASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLVSEG R+FN M  D+ I P  EHY C+ DLL R GLL +A++ + +MP +      
Sbjct: 587 HVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVW 646

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
             F+GAC+VH +  L K AA K+LEL+P++P  Y  +SN+YA    W +   +R+ M++ 
Sbjct: 647 RTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKER 706

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              K  GCSWIE+  +IH F   D +HP A  +Y  L
Sbjct: 707 NLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 187/336 (55%), Gaps = 13/336 (3%)

Query: 153 MLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           M  D +R +D +TF+SLL++C++A D  +G+ +H+ +++     +  + ++L+ LY K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 212 FVEDARRVFDEVL---CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
               A  VF+ +     RD+V W+ M++CY  N     AI VF      G+  + + +++
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGN-IDDACRVFDGMTA 326
           ++ +C       +GR   G ++K   F+ DV V  SL+DM+ K  N  ++A +VFD M+ 
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            NVV+W  M+    Q G  REA++   DM+   F  D+ TL+S+ S+C  L      +Q+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 387 HAYAIKNGVQAFLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           H++AI++G+     +E +L++ Y+KC   GS+    + F  +++  +++WT++I  Y  +
Sbjct: 292 HSWAIRSGLVD--DVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 444 -GLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSH 477
             L+ E+I +F +M++   V P+   F     AC +
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 154/332 (46%), Gaps = 12/332 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S A K        + GKQ+     K GL +  S+ N V+ ++VK    +D ++ F+
Sbjct: 373 HFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFE 432

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR---LDHITFNSLLRACVQADDIE 179
            +  +N+V++NT + G      N    F+ +     R   +   TF SLL        I 
Sbjct: 433 SLSEKNLVSYNTFLDGTCR-NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIR 491

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G ++HS ++K+G   N  V +AL+ +Y KCG ++ A RVF+ +  R+++ W  M++ +A
Sbjct: 492 KGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFA 551

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDV 298
            +      +  FN M  EG+K +  T+ +++++C  +G    G R  + +         +
Sbjct: 552 KHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKM 611

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
                +VD+  + G + DA    + M  + +V+ W T +     + +        R +L+
Sbjct: 612 EHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILE 671

Query: 358 GSFCPDE----VTLASILSSCGSLSISCETRQ 385
               P+E    + L++I +  G    S E R+
Sbjct: 672 --LDPNEPAAYIQLSNIYACAGKWEESTEMRR 701



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 343 GDGREAVKLLRDMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           GD R AV  L  M +    P D VT +S+L SC         + VHA  I+  ++    +
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 402 ENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            N+LI+ YSK G  A A   F +++   + D+V+W++++  Y  +G   ++I+VF + L 
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
             + P+   +  V+ ACS+   V  G      ++   H   D
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESD 201


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/606 (33%), Positives = 329/606 (54%), Gaps = 41/606 (6%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME--KLFDEMRV 126
           +LK+ +K   ++  KQ+H+HI+K GL N L   ++++      ++ D      LF+ +  
Sbjct: 32  SLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91

Query: 127 RNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
            N+  WN++I G+     +++P     +F RM+   V  +  TF  LL++C +      G
Sbjct: 92  PNLFIWNSMIRGL---SMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEG 148

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCG------------------------------ 211
           +++H+ +LK+GF  + F+ ++L+++Y + G                              
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALW 208

Query: 212 -FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
            +++ AR++FDE+  +D+V WN M++ YA       A+ +F  MR   +  +  T  S++
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVL 268

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
           ++C    +  LG  +   +  +    ++ +  +L+DMY+K G++  A  +FD M  ++V+
Sbjct: 269 SACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVI 328

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SWN M+ G+      +EA+ L R+ML     P E+T  SIL SC  L      + +HAY 
Sbjct: 329 SWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYI 388

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
            KN      S+  +LI+ Y+KCG+I  A Q F  +K   L +W ++I   A HG + ++ 
Sbjct: 389 NKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAF 448

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
           E+F KM S  + P+ I F+ +LSAC H GLV  G ++F+ M+ DY I P S+HY C+ DL
Sbjct: 449 ELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDL 508

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           LGR GL  EA  LL +M ++P     G+ +GAC+ HG + L +  AE+L ELEP  P  Y
Sbjct: 509 LGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAY 568

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            L+SN+YA    W DVAR+R  + D    KVPGC+ IE+   +H F+  D+ HPQ+  +Y
Sbjct: 569 VLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIY 628

Query: 631 AMLCTV 636
            ML  V
Sbjct: 629 RMLEEV 634


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 320/623 (51%), Gaps = 72/623 (11%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q +Q H+HI+K GL N   L  ++L  Y     F D   + D +   N+ +++TLI  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 139 I--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               +   +    F +ML   +  D+    S ++AC     ++  R++H      GF  +
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-----------LNCLGD 245
            FV S+LV +Y KC  + DA RVFD +   D+V W+ +V+ YA            + +GD
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 246 -----------GAIAVFNL-------------MRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
                      G IA FN              M L G + D  T SS++ + G L    +
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVM 268

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAK------------------------------- 310
           G  IHG VIKQ    D  V+++L+DMY K                               
Sbjct: 269 GILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSR 328

Query: 311 NGNIDDACRVFDGMTAK----NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           NG ++ + R+F  +  +    NVVSW +M+    QNG   EA++L R+M      P+ VT
Sbjct: 329 NGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVT 388

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +  +L +CG+++     +  H ++++ G+   + + +ALI+ Y+KCG I  +  CF  + 
Sbjct: 389 IPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             +LV W ++I  YA HG +KE++E+F+ M     +PD I+F  VLSACS  GL  EG  
Sbjct: 449 TKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSY 508

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YFN M S Y I    EHY C+  LL R G L +AY ++  MP+ P +   GA + +C+VH
Sbjct: 509 YFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVH 568

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            ++ L + AAEKL ELEPS P NY L+SN+YAS+  W +V R+R MM++    K PGCSW
Sbjct: 569 NNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSW 628

Query: 607 IEIAGEIHTFVSSDRSHPQAVHM 629
           IE+  ++H  ++ D+SHPQ   +
Sbjct: 629 IEVKNKVHMLLAGDKSHPQMTQI 651



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 199/449 (44%), Gaps = 74/449 (16%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A+K  A    L+  +Q+H      G  +   +Q+ ++H+Y+KC    D  ++FD M   +
Sbjct: 120 AVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPD 179

Query: 129 IVTWNTLISG-------------------------IINCGGNVTPY------------FR 151
           +V+W+ L++                          +I+  G +  +            F 
Sbjct: 180 VVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFL 239

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
            M L     D  T +S+L A    +D+ +G  +H +++K G   +  VSSAL+D+YGKC 
Sbjct: 240 DMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCS 299

Query: 212 FVEDARRVFDEV--------------------------LCRDL---------VLWNVMVS 236
              +  +VFD++                          L R L         V W  M++
Sbjct: 300 CTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIA 359

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           C + N     A+ +F  M++ G+K +  T   L+ +CG + +   G+  H   +++    
Sbjct: 360 CCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIST 419

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V ++L+DMYAK G I  +   FDG+  KN+V WN ++ G+  +G  +EA+++   M 
Sbjct: 420 DVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQ 479

Query: 357 QGSFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +    PD ++   +LS+C    ++ E +   ++ + K G++A +     ++   S+ G +
Sbjct: 480 RSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKL 539

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             A      +   PD   W +++ +   H
Sbjct: 540 EQAYAMIRRMPVNPDACVWGALLSSCRVH 568



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 4/243 (1%)

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           T  S    RQ H  ++K     D  +AT L+  YA N    DA  V D +   NV S++T
Sbjct: 25  TTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFST 84

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           ++  F +      A+     ML     PD   L S + +C  LS     RQVH  A  +G
Sbjct: 85  LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
             +   ++++L++ Y KC  I  A + F  + EPD+V+W++++ AYA  G   E+  +F 
Sbjct: 145 FDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFS 204

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +M    V+P+ I++  +++  +H GL SE +    LM  D H+       T ++ +L  V
Sbjct: 205 EMGDSGVQPNLISWNGMIAGFNHSGLYSEAV----LMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 515 GLL 517
           G L
Sbjct: 261 GDL 263


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 316/561 (56%), Gaps = 5/561 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G+++H    KLG    + +   ++H+Y +         LFD+M  R++ +WN +I
Sbjct: 229 GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMI 288

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           SG+I  G           M L+ ++++ +T  S+L  C Q  DI     +H +++K G  
Sbjct: 289 SGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLE 348

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FVS+AL+++Y K G +EDAR+ F ++   D+V WN +++ Y  N     A   F  M
Sbjct: 349 FDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM 408

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGN 313
           +L G + D  T  SL +        K  R +HG ++++ + + DV++  ++VDMYAK G 
Sbjct: 409 QLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGL 468

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILS 372
           +D A +VF+ +  K+V+SWNT++ G+ QNG   EA+++ + M +     P++ T  SIL 
Sbjct: 469 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +   +    +  ++H   IK  +   + +   LI+ Y KCG +  A+  F  V +   VT
Sbjct: 529 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +II  +  HG +++++++F +ML   V+PD + F+ +LSACSH G V EG   F LM 
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM- 647

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
            +Y I P  +HY C+ DLLGR G L  AYD +  MP++P +   GA +GAC++HG+I L 
Sbjct: 648 QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELG 707

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           K+A+++L E++      Y L+SN+YA+   W  V ++R + R+    K PG S IE+  +
Sbjct: 708 KFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRK 767

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
           +  F + ++SHP+   +Y  L
Sbjct: 768 VDVFYTGNQSHPKCKEIYEEL 788



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 269/506 (53%), Gaps = 27/506 (5%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            K LH+ ++  G    + +  +++++Y            FD++  +++  WN++IS  ++
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 142 CG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G     +  +++ +L+  +R D  TF  +L+AC    D   GR++H +  K+GF  N F
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVF 251

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+++L+ +Y + GF   AR +FD++  RD+  WN M+S    N     A+ V + MRLEG
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K ++ T  S++  C  LG       IH  VIK   + D+ V+ +L++MYAK GN++DA 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDAR 371

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           + F  M   +VVSWN+++  + QN D   A      M    F PD +TL S L+S  + S
Sbjct: 372 KAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS-LASIVAQS 430

Query: 379 ISCE-TRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
             C+ +R VH + ++ G +   + I NA+++ Y+K G +  A + F  +   D+++W ++
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTL 490

Query: 437 IGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-SD 494
           I  YA +GL+ E+IEV++ M     + P+   ++ +L A +H G + +G++    +I ++
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTN 550

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
            H+  D    TCL D+ G+ G LV+A  L   +P E  S T  A I    +HG       
Sbjct: 551 LHL--DVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGH------ 601

Query: 555 AAEKLLEL------EPSKPVNYALVS 574
            AEK L+L      E  KP +   VS
Sbjct: 602 -AEKTLKLFGEMLDEGVKPDHVTFVS 626



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 200/380 (52%), Gaps = 5/380 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V  + G +     +H +++K GL   L + N ++++Y K    +D  K F +M + ++
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+        VT   +F +M L+  + D +T  SL     Q+ D +  R +H F
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 188 ILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           I++ G+ + +  + +A+VD+Y K G ++ A +VF+ +  +D++ WN +++ YA N L   
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE 502

Query: 247 AIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI V+ +M   + +  +  T+ S++ +   +G+ + G +IHG VIK +  LDV VAT L+
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 562

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K G + DA  +F  +  ++ V+WN ++   G +G   + +KL  +ML     PD V
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T  S+LS+C       E +       + G++  L     +++   + G +  A      +
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 682

Query: 426 K-EPDLVTWTSIIGAYAFHG 444
             +PD   W +++GA   HG
Sbjct: 683 PLQPDASIWGALLGACRIHG 702


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 331/571 (57%), Gaps = 21/571 (3%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           FGF     QLHS I+K GL  ++ + N ++ +Y +C    +  ++FDEMR +++V+WN +
Sbjct: 194 FGF-----QLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAM 248

Query: 136 ISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +SG     N G      F  ML + ++LDH++F   + AC    + E+GR++HS  +K+G
Sbjct: 249 LSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIG 308

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +  +  V + L+  Y KC  +EDA+ VF+ ++ R++V W  M+S        + A ++FN
Sbjct: 309 YDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISE-----EDATSLFN 363

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR +G+  +  TF  L+++       + G+ IHG+ +K SF  ++ V+ SL+ MYAK  
Sbjct: 364 EMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFE 423

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++ D+ +VF+ +  + ++SWN+++ G+ QNG  +EA++     L  S  P+E T  S+LS
Sbjct: 424 SMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESR-PNEFTFGSVLS 482

Query: 373 SCGSL-SISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           S  S  +IS    Q  H++ +K G+     + +AL++ Y+K GSI  +L  F      + 
Sbjct: 483 SIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNE 542

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V WT+II A+A HG  +  + +F+ M    V+PDSI FL V++AC   G+V  G + FN 
Sbjct: 543 VAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNS 602

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M+ D+ I P  EHY+ + D+LGR G L EA + +  +P       L + +GAC++HG++ 
Sbjct: 603 MVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVD 662

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           +AK  A+ L+E+EP    +Y L+SN+YA +  W  VA++RK MR+    K  G SW+++ 
Sbjct: 663 MAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDVG 722

Query: 611 GE-----IHTFVSSDRSHPQAVHMYAMLCTV 636
                  +H F S D+ HPQ+  +Y M  T+
Sbjct: 723 DADGSLYLHGFSSDDKFHPQSEEIYRMAETL 753



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/506 (29%), Positives = 259/506 (51%), Gaps = 19/506 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G Q+H+  +  G  + +++ N ++++Y K   FD    +F+ +   +IV+WNT++SG   
Sbjct: 97  GCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGF-Q 155

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
              +   +  RM    V  D +T  ++L  C   +    G +LHS ILK G     FV +
Sbjct: 156 RSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGN 215

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC-LGDGAIAVFNLMRLEGMK 260
           AL+ +Y +C  + +ARRVFDE+  +DLV WN M+S YA     G  AI VF  M  EGMK
Sbjct: 216 ALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMK 275

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D+ +F+  +++CG     +LGRQIH L +K  +D  V V   L+  Y+K  +I+DA  V
Sbjct: 276 LDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLV 335

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+ +  +NVVSW TM+     +    +A  L  +M +    P++VT   ++ +    ++ 
Sbjct: 336 FESIIDRNVVSWTTMI-----SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLV 390

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            E + +H   +K    + L++ N+LI  Y+K  S++ +++ F  +   ++++W S+I  Y
Sbjct: 391 EEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGY 450

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP- 499
           A +GL +E+++ F   L  + RP+   F  VLS+ +    +S  +R+     S  HIL  
Sbjct: 451 AQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASAEAIS--MRHGQRCHS--HILKL 505

Query: 500 ----DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
               +    + L D+  + G + E+  + +  P++       A I A   HG    A   
Sbjct: 506 GLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEV-AWTAIISAHARHGDYE-AVMN 563

Query: 556 AEKLLELEPSKPVNYALVSNVYASER 581
             K +E E  KP +   ++ + A  R
Sbjct: 564 LFKDMEREGVKPDSITFLAVITACGR 589



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 198/386 (51%), Gaps = 8/386 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  ++ A+         + G+Q+HS  +K+G    + + N ++  Y KC+  +D + +F+
Sbjct: 278 HVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFE 337

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            +  RN+V+W T+IS       + T  F  M  D V  + +TF  L+ A    + +E G+
Sbjct: 338 SIIDRNVVSWTTMIS---ISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQ 394

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H   +K  F     VS++L+ +Y K   + D+ +VF+E+  R+++ WN ++S YA N 
Sbjct: 395 MIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNG 454

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG--SSKLGRQIHGLVIKQSFDLDVLV 300
           L   A+  F L  L   + + FTF S+++S  +    S + G++ H  ++K   + + +V
Sbjct: 455 LWQEALQTF-LSALMESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIV 513

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +++L+DMYAK G+I ++  VF     KN V+W  ++    ++GD    + L +DM +   
Sbjct: 514 SSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGV 573

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGAL 419
            PD +T  +++++CG   +     Q+    +K+  ++      +++++   + G +  A 
Sbjct: 574 KPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAE 633

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFHG 444
           +  G +     L    S++GA   HG
Sbjct: 634 EFVGQIPGGAGLSVLQSLLGACRIHG 659


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 323/565 (57%), Gaps = 3/565 (0%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           F++ G  +H   +K      + + N ++ +Y KC   +D E++F  M  R+ V+WNTL+S
Sbjct: 263 FVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLS 322

Query: 138 GIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G++      +   YFR M     + D ++  +L+ A  ++ ++  G+ +H++ ++ G   
Sbjct: 323 GLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDS 382

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N  + + L+D+Y KC  V+     F+ +  +DL+ W  +++ YA N     AI +F  ++
Sbjct: 383 NMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQ 442

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           ++GM  D     S++ +C  L S    R+IHG V K+    D+++  ++V++Y + G+ D
Sbjct: 443 VKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRD 501

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A R F+ + +K++VSW +M+     NG   EA++L   + Q +  PD + + S LS+  
Sbjct: 502 YARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATA 561

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +LS   + +++H + I+ G      I ++L++ Y+ CG++  + + F SVK+ DL+ WTS
Sbjct: 562 NLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTS 621

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I A   HG   E+I +F+KM    V PD I FL +L ACSH GL+ EG R+F +M   Y
Sbjct: 622 MINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGY 681

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            + P  EHY C+ DLL R   L EAY  + SMPI+P S+   A +GAC +H +  L + A
Sbjct: 682 QLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELA 741

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A++LL+ +      YAL+SN++A++  W DV  +R  M+ N   K PGCSWIE+  +IHT
Sbjct: 742 AKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHT 801

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLM 640
           F++ D+SHPQ   +Y  L     L+
Sbjct: 802 FMARDKSHPQTDDIYLKLAQFTKLL 826



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 223/402 (55%), Gaps = 6/402 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG+QLH+ ++K  L   L+   ++LH+Y KC +  D  K+FDEM  R I TWN ++  
Sbjct: 62  LPQGQQLHARLLKSHLSAFLA--TKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGA 119

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G        ++ M +  V +D  TF S+L+AC    +  +G  +H   +K GFG  
Sbjct: 120 FVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEF 179

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            FV +AL+ +YGKCG +  AR +FD ++    D V WN ++S +        A+++F  M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRM 239

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           +  G+  + +TF + +         KLG  IHG  +K +   DV VA +L+ MYAK G +
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRM 299

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +DA RVF  M  ++ VSWNT++ G  QN   R+A+   RDM   +  PD+V++ +++++ 
Sbjct: 300 EDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAAS 359

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
           G        ++VHAYAI+NG+ + + I N LI+ Y+KC  +      F  + E DL++WT
Sbjct: 360 GRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWT 419

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +II  YA +    E+I +F K+    +  D +    VL ACS
Sbjct: 420 TIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 216/431 (50%), Gaps = 5/431 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE-- 123
           +   LK     G  + G ++H   +K G    + + N ++ +Y KC        LFD   
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207

Query: 124 MRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M   + V+WN++IS  +  G        FRRM    V  +  TF + L+       +++G
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +H   LK     + +V++AL+ +Y KCG +EDA RVF  +LCRD V WN ++S    N
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            L   A+  F  M+    K D  +  +L+ + G  G+   G+++H   I+   D ++ + 
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIG 387

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +L+DMYAK   +      F+ M  K+++SW T++ G+ QN    EA+ L R +      
Sbjct: 388 NTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD 447

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            D + + S+L +C  L      R++H Y  K  + A + ++NA++N Y + G    A + 
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRA 506

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F S++  D+V+WTS+I     +GL  E++E+F  +    ++PDSIA +  LSA ++   +
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSL 566

Query: 482 SEGLRYFNLMI 492
            +G      +I
Sbjct: 567 KKGKEIHGFLI 577



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 189/364 (51%), Gaps = 18/364 (4%)

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNV-------RLDHITFNSLLRACVQADDIEVGR 182
           ++ NTL  G +N      P F+ + L +        RL+H   + LL  CV    +  G+
Sbjct: 14  ISVNTLNKGTLN------PAFQSLTLLSTHPLATPSRLEH-AHSLLLDLCVAVKALPQGQ 66

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LH+ +LK    L+ F+++ L+ +Y KCG ++DA +VFDE+  R +  WN M+  +  + 
Sbjct: 67  QLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSG 124

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               AI ++  MR+ G+  D  TF S++ +CG LG S+LG +IHG+ +K  F   V V  
Sbjct: 125 KYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCN 184

Query: 303 SLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +L+ MY K G++  A  +FDG  M  ++ VSWN+++      G   EA+ L R M +   
Sbjct: 185 ALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGV 244

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             +  T  + L      S       +H  A+K+   A + + NALI  Y+KCG +  A +
Sbjct: 245 ASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAER 304

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F S+   D V+W +++     + L ++++  F  M + A +PD ++ L +++A    G 
Sbjct: 305 VFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGN 364

Query: 481 VSEG 484
           +  G
Sbjct: 365 LLNG 368



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 5/263 (1%)

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           S L++ C  + +   G+Q+H  ++K    L   +AT L+ MY K G++ DA +VFD MT 
Sbjct: 50  SLLLDLCVAVKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTE 107

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           + + +WN M+  F  +G   EA++L ++M       D  T  S+L +CG+L  S    ++
Sbjct: 108 RTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEI 167

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHG 444
           H  A+K G   F+ + NALI  Y KCG + GA   F  +  ++ D V+W SII A+   G
Sbjct: 168 HGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEG 227

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
              E++ +F +M    V  ++  F+  L        V  G+      +   H   D    
Sbjct: 228 KCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNH-FADVYVA 286

Query: 505 TCLTDLLGRVGLLVEAYDLLASM 527
             L  +  + G + +A  + ASM
Sbjct: 287 NALIAMYAKCGRMEDAERVFASM 309



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL  +A    L++GK++H  +++ G   +  + + ++ +Y  C   ++  K+F  ++ R+
Sbjct: 556 ALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRD 615

Query: 129 IVTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           ++ W ++I  +G+  CG      F++M  +NV  DHITF +LL AC  +  +  G+R   
Sbjct: 616 LILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFE 675

Query: 187 FILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
            I+K G+ L  +    + +VDL  +   +E+A
Sbjct: 676 -IMKYGYQLEPWPEHYACMVDLLSRSNSLEEA 706


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 313/566 (55%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L +GKQLHS+++K G+     ++  +L +YVKC    +  ++F      N+
Sbjct: 251 LAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNV 310

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G I+        F +M+   VR +  T+  LLR C  A +I +G ++H  
Sbjct: 311 VLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLL 370

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K GF  + +VS  L+D+Y K G+++ ARR+ + +  +D+V W  M++ Y  +     A
Sbjct: 371 SIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEA 430

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +  F  M+L G+  D    +S +++C  + + + G+QIH  V    +  DV +  +LV++
Sbjct: 431 LETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNL 490

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G   +A  +F+ +  K+ ++WN MV GF Q+G   EA+++   M Q     +  T 
Sbjct: 491 YARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTF 550

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  +L+   + +Q+HA  IK G  +   + NALI+ Y KCGSI  A   F  + E
Sbjct: 551 VSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSE 610

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W +II + + HG   E++++F++M    ++P+ + F+ VL+ACSH GLV EGL Y
Sbjct: 611 RNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGY 670

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M S++ I P  +HY C+ D+LGR G L  A   +  MP+   +      + AC+VH 
Sbjct: 671 FKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHK 730

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + + AA+ LLELEP    +Y L+SN YA    W     +RKMM+D    K PG SWI
Sbjct: 731 NIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWI 790

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F   DR HP A  +Y  L
Sbjct: 791 EVKNVVHAFFVGDRLHPLAHQIYKYL 816



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 255/495 (51%), Gaps = 10/495 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K    +QG+ +H+ + K G C++  + N ++ +Y++  +    E++F EM  
Sbjct: 147 SSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY 206

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + VT+NTLIS    CG   +    F  M L     D +T  SLL AC    D+  G++L
Sbjct: 207 CDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQL 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS++LK G   +  +  +L+DLY KCG + +A  +F      ++VLWN+M+  Y      
Sbjct: 267 HSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL 326

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             +  +F  M   G++ + FT+  L+ +C   G   LG QIH L IK  F+ D+ V+  L
Sbjct: 327 AKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVL 386

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K G +D A R+ + + AK+VVSW +M+ G+ Q+   +EA++  +DM      PD 
Sbjct: 387 IDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDN 446

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           + LAS +S+C  +    + +Q+H+    +G  A +SI NAL+N Y++CG    A   F +
Sbjct: 447 IGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEA 506

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++  D +TW  ++  +A  GL +E++EVF KM    V+ +   F+  +SA ++   + +G
Sbjct: 507 IEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQG 566

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            +  +  +       ++E    L  L G+ G + +A      M  E    +    I +C 
Sbjct: 567 -KQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCS 624

Query: 545 VHGSIGLAKWAAEKL 559
            HG      W  E L
Sbjct: 625 QHG------WGLEAL 633



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 218/446 (48%), Gaps = 5/446 (1%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--C 142
           +H+  +  GL       N ++ +Y K        ++F+++  R+ V+W  ++SG      
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           G      + +M    V       +S+L AC +A   E GR +H+ + K G      V +A
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ LY + G +  A RVF E+   D V +N ++S +A    G+ A+ +F  MRL G   D
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T +SL+ +C ++G    G+Q+H  ++K     D ++  SL+D+Y K G I +A  +F 
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
                NVV WN M+V +GQ  D  ++  L   M+     P+E T   +L +C        
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINL 363

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             Q+H  +IK G ++ + +   LI+ YSK G +  A +    ++  D+V+WTS+I  Y  
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQ 423

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPDS 501
           H   KE++E F+ M    + PD+I     +SAC+    + +G + +  + +S Y    D 
Sbjct: 424 HEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYS--ADV 481

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASM 527
             +  L +L  R G   EA+ L  ++
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLFEAI 507



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 168/317 (52%), Gaps = 4/317 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+     G +  G+Q+H   +K G  + + +   ++ +Y K    D   ++ + + 
Sbjct: 348 YPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLE 407

Query: 126 VRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            +++V+W ++I+G +    C       F+ M L  +  D+I   S + AC     +  G+
Sbjct: 408 AKDVVSWTSMIAGYVQHEFC-KEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQ 466

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++HS +   G+  +  + +ALV+LY +CG  ++A  +F+ +  +D + WN MVS +A + 
Sbjct: 467 QIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSG 526

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L + A+ VF  M   G+K + FTF S +++   L   K G+QIH  VIK     +  VA 
Sbjct: 527 LYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVAN 586

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+ +Y K G+I+DA   F  M+ +N VSWNT++    Q+G G EA+ L   M Q    P
Sbjct: 587 ALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKP 646

Query: 363 DEVTLASILSSCGSLSI 379
           ++VT   +L++C  + +
Sbjct: 647 NDVTFIGVLAACSHVGL 663



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  ++  SA    ++QGKQ+H+ ++K G  ++  + N ++ +Y KC + +D +  F EM 
Sbjct: 550 FVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS 609

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
            RN V+WNT+I+     G  +     F +M  + ++ + +TF  +L AC     +E G  
Sbjct: 610 ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLG 669

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYAL 240
              S   + G        + +VD+ G+ G ++ AR+  +E+ +  + ++W  ++S C   
Sbjct: 670 YFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVH 729

Query: 241 NCLGDGAIAVFNLMRLE 257
             +  G +A   L+ LE
Sbjct: 730 KNIEIGELAAKYLLELE 746


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 312/567 (55%), Gaps = 5/567 (0%)

Query: 79  LQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L  G+ LH+  M++G+ N  + LQN VL +Y +C + +D +KLFDEM   N V+  T+IS
Sbjct: 97  LSHGRLLHNR-MRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMIS 155

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                G        F RML    +     + +LL++ V    +++GR++H+ +++ G   
Sbjct: 156 AYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCS 215

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N  + + +V++Y KCG++  A+RVFD++  +  V W  ++  Y        A+ +F  + 
Sbjct: 216 NASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLI 275

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG++ D F FS ++ +C +L   + G+QIH  V K   + +V V T LVD Y K  + +
Sbjct: 276 TEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFE 335

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSC 374
            ACR F  +   N VSW+ ++ G+ Q     EAVK  + +  + +   +  T  SI  +C
Sbjct: 336 SACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQAC 395

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L+      QVHA AIK  +      E+ALI  YSKCG +  A + F S+  PD+V WT
Sbjct: 396 SVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWT 455

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           + I  +A++G + E++ +FEKM+S  ++P+S+ F+ VL+ACSH GLV +G  Y + M+  
Sbjct: 456 AFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRK 515

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y++ P  +HY C+ D+  R GLL EA   + +MP EP + +   F+  C  H ++ L K 
Sbjct: 516 YNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKI 575

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           A E+L +L+P     Y L  N+Y     W + A + K+M +    K   CSWI+  G+IH
Sbjct: 576 AGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIH 635

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLME 641
            F+  D+ HPQ+  +Y  L    G ME
Sbjct: 636 RFIVGDKHHPQSQEIYEKLKEFDGFME 662



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 192/375 (51%), Gaps = 5/375 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y+  LK       L  G+Q+H+H+++ GLC+  S++  ++++YVKC      +++FD+
Sbjct: 183 SMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQ 242

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M V+  V W  L+ G    G   +    F  ++ + V  D   F+ +L+AC   +++  G
Sbjct: 243 MAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFG 302

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           +++H+ + K+G      V + LVD Y KC   E A R F E+   + V W+ ++S Y   
Sbjct: 303 KQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQM 362

Query: 242 CLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
              + A+  F  +R +  +  + FT++S+  +C  L    +G Q+H   IK+S       
Sbjct: 363 SQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYG 422

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            ++L+ MY+K G +DDA  VF+ M   ++V+W   + G    G+  EA++L   M+    
Sbjct: 423 ESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGM 482

Query: 361 CPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
            P+ VT  ++L++C    +  + +  +     K  V   +   + +I+ Y++ G +  AL
Sbjct: 483 KPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEAL 542

Query: 420 QCFGSVK-EPDLVTW 433
           +   ++  EPD ++W
Sbjct: 543 RFMKNMPFEPDAMSW 557



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 204/419 (48%), Gaps = 15/419 (3%)

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           +F+ M    V +   ++  L  AC +   +  GR LH+ +       +  + + ++ +Y 
Sbjct: 68  FFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMYC 127

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           +CG +EDA ++FDE+   + V    M+S YA   L D A+ +F+ M   G K     +++
Sbjct: 128 ECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTT 187

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           L+ S     +  +GRQIH  VI+     +  + T +V+MY K G +  A RVFD M  K 
Sbjct: 188 LLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKK 247

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            V+W  ++VG+ Q G  R+A+KL  D++      D    + +L +C SL      +Q+HA
Sbjct: 248 PVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHA 307

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
              K G++  +S+   L++ Y KC S   A + F  ++EP+ V+W++II  Y      +E
Sbjct: 308 CVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEE 367

Query: 449 SIEVFEKMLS-HAVRPDSIAFLEVLSACSH------GGLVSEGLRYFNLMISDYHILPDS 501
           +++ F+ + S +AV  +S  +  +  ACS       GG V       +L+ S Y      
Sbjct: 368 AVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQY------ 421

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
              + L  +  + G L +A+++  SM   P      AFI     +G+   A    EK++
Sbjct: 422 -GESALITMYSKCGCLDDAHEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMV 478



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A   F  M   G+    +++  L  +C  L S   GR +H  +     +  VL+   ++ 
Sbjct: 65  AFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQ 124

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY + G+++DA ++FD M+  N VS  TM+  + + G   +AV L   ML+    P    
Sbjct: 125 MYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSM 184

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             ++L S  +       RQ+HA+ I+ G+ +  SIE  ++N Y KCG + GA + F  + 
Sbjct: 185 YTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMA 244

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
               V WT ++  Y   G +++++++F  +++  V  DS  F  VL AC+
Sbjct: 245 VKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACA 294


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 212/627 (33%), Positives = 321/627 (51%), Gaps = 72/627 (11%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q +Q H+HI+K GL N   L  ++L  Y     F D   + D +   N+ +++TLI  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 139 I--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               +   +    F +ML   +  D+    S ++AC     ++  R++H      GF  +
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-----------LNCLGD 245
            FV S+LV +Y KC  + DA RVFD +   D+V W+ +V+ YA            + +GD
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 246 -----------GAIAVFNL-------------MRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
                      G IA FN              M L G + D  T SS++ + G L    +
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVM 268

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAK------------------------------- 310
           G  IHG VIKQ    D  V+++L+DMY K                               
Sbjct: 269 GILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSR 328

Query: 311 NGNIDDACRVFDGMTAK----NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           NG ++ + R+F  +  +    NVVSW +M+    QNG   EA++L R+M      P+ VT
Sbjct: 329 NGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVT 388

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +  +L +CG+++     +  H ++++ G+   + + +ALI+ Y+KCG I  +  CF  + 
Sbjct: 389 IPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             +LV W ++I  YA HG +KE++E+F+ M     +PD I+F  VLSACS  GL  EG  
Sbjct: 449 TKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSY 508

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YFN M S Y I    EHY C+  LL R G L +AY ++  MP+ P +   GA + +C+VH
Sbjct: 509 YFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVH 568

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            ++ L + AAEKL ELEPS P NY L+SN+YAS+  W +V R+R MM++    K PGCSW
Sbjct: 569 NNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSW 628

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           IE+  ++H  ++ D+SHPQ   +   L
Sbjct: 629 IEVKNKVHMLLAGDKSHPQMTQIIEKL 655



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 199/449 (44%), Gaps = 74/449 (16%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A+K  A    L+  +Q+H      G  +   +Q+ ++H+Y+KC    D  ++FD M   +
Sbjct: 120 AVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPD 179

Query: 129 IVTWNTLISG-------------------------IINCGGNVTPY------------FR 151
           +V+W+ L++                          +I+  G +  +            F 
Sbjct: 180 VVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFL 239

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
            M L     D  T +S+L A    +D+ +G  +H +++K G   +  VSSAL+D+YGKC 
Sbjct: 240 DMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCS 299

Query: 212 FVEDARRVFDEV--------------------------LCRDL---------VLWNVMVS 236
              +  +VFD++                          L R L         V W  M++
Sbjct: 300 CTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIA 359

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           C + N     A+ +F  M++ G+K +  T   L+ +CG + +   G+  H   +++    
Sbjct: 360 CCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIST 419

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V ++L+DMYAK G I  +   FDG+  KN+V WN ++ G+  +G  +EA+++   M 
Sbjct: 420 DVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQ 479

Query: 357 QGSFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +    PD ++   +LS+C    ++ E +   ++ + K G++A +     ++   S+ G +
Sbjct: 480 RSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKL 539

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             A      +   PD   W +++ +   H
Sbjct: 540 EQAYAMIRRMPVNPDACVWGALLSSCRVH 568



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 4/243 (1%)

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           T  S    RQ H  ++K     D  +AT L+  YA N    DA  V D +   NV S++T
Sbjct: 25  TTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFST 84

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           ++  F +      A+     ML     PD   L S + +C  LS     RQVH  A  +G
Sbjct: 85  LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
             +   ++++L++ Y KC  I  A + F  + EPD+V+W++++ AYA  G   E+  +F 
Sbjct: 145 FDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFS 204

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +M    V+P+ I++  +++  +H GL SE +    LM  D H+       T ++ +L  V
Sbjct: 205 EMGDSGVQPNLISWNGMIAGFNHSGLYSEAV----LMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 515 GLL 517
           G L
Sbjct: 261 GDL 263


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/619 (32%), Positives = 315/619 (50%), Gaps = 73/619 (11%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L   +  H+ I+K  +  +  L N ++  Y +     D  ++FDE+ +RN  ++N L+S 
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 139 IINCG-----------------------------------GNVTPYFRRMLLDNVRLDHI 163
               G                                    +   +   M  D+  L+  
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           +F S L AC    D   G ++H  + +     +  + SALVD+Y KC   EDARRVFD +
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R++V WN +++CY  N     A+ +F  M   G   D  T SS++++C  L + + GR
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 284 QIHGLVIK-QSFDLDVLVATSLVDMYAKNG------------------------------ 312
           Q+H  ++K      D+++  +LVDMYAK G                              
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS 332

Query: 313 -NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            N++DA  VF  M  KNV++WN ++  + QNG+  EA++L   + + S  P   T  ++L
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIE------NALINAYSKCGSIAGALQCFGSV 425
           ++CG+++     +Q H + +K G +     E      N+L++ Y K GSI    + F  +
Sbjct: 393 NACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              D V+W ++I  YA +G +K+++ +FE+ML     PDS+  + VLSAC H GLV EG 
Sbjct: 453 AARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR 512

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           RYF+ M  D+ I P  +HYTC+ DLLGR G L EA +L+  MP+EP S    + +GAC++
Sbjct: 513 RYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRL 572

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H ++ L +W A +L EL+P     Y L+SN+YA    W +V R+R+ M+D    K PGCS
Sbjct: 573 HKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCS 632

Query: 606 WIEIAGEIHTFVSSDRSHP 624
           WIEI  +++ F++ D+ HP
Sbjct: 633 WIEIGRKMNVFLARDKRHP 651



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 230/449 (51%), Gaps = 45/449 (10%)

Query: 39  KHDRSVLSSQLRNSGTIHESTH--SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN 96
           +H R   +  LR    +H      +A+SF S AL   A     + G+Q+H  + +    +
Sbjct: 126 RHGRGHAADALRFLAAMHADDFVLNAYSFAS-ALSACAAEKDSRTGEQVHGLVARSPHAD 184

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRML 154
            + +++ ++ +Y KC+  +D  ++FD M  RN+V+WN+LI+     G  G     F  M+
Sbjct: 185 DVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMM 244

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGF- 212
                 D +T +S++ AC        GR++H+ ++K      +  +++ALVD+Y KCG  
Sbjct: 245 AAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRT 304

Query: 213 ------------------------------VEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
                                         VEDA+ VF +++ ++++ WNV+++ YA N 
Sbjct: 305 WEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNG 364

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF------DL 296
             + AI +F  ++ + +   ++T+ +++N+CG +   +LG+Q H  V+K+ F      + 
Sbjct: 365 EEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPES 424

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V  SLVDMY K G+IDD  +VF+ M A++ VSWN M+VG+ QNG  ++A+ L   ML
Sbjct: 425 DVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML 484

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSI 415
             +  PD VT+  +LS+CG   +  E R+  H+    +G+         +++   + G +
Sbjct: 485 CSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHL 544

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             A +    +  EPD V W S++GA   H
Sbjct: 545 KEAEELINDMPMEPDSVLWASLLGACRLH 573



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 44/372 (11%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LLR+   A ++   R  H+ ILK       F+ + LV  Y + G + DARRVFDE+  R+
Sbjct: 26  LLRS---APNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRN 82

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFN----------------------------LMRLEGM 259
              +N ++S YA     D A A+F                             L  L  M
Sbjct: 83  TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAM 142

Query: 260 KGDYF-----TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             D F     +F+S +++C     S+ G Q+HGLV +     DV + ++LVDMYAK    
Sbjct: 143 HADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERP 202

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +DA RVFD M  +NVVSWN+++  + QNG   EA+ L  +M+   F PDEVTL+S++S+C
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSAC 262

Query: 375 GSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
             L+   E RQVHA+ +K + ++  + + NAL++ Y+KCG    A   F S+    +V+ 
Sbjct: 263 AGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSE 322

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           TSI+  YA     +++  VF +M+   V    IA+  +++A +  G   E +R F  +  
Sbjct: 323 TSILTGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLFVQLKR 378

Query: 494 DYHILPDSEHYT 505
           D  I P   HYT
Sbjct: 379 D-SIWP--THYT 387


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 318/559 (56%), Gaps = 11/559 (1%)

Query: 85  LHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140
           L+  ++KLG    +   + +  + +Y +    D   ++FD    RN   WNT+I G +  
Sbjct: 240 LYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQN 299

Query: 141 NCGGNVTPYFRR-MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           NC       F + M  +   LD +TF S L A  Q   +E+GR+LH++ILK    L   +
Sbjct: 300 NCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVI 359

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A++ +Y +CG +  + +VF  +L RD+V WN MVS +  N L D  + +   M+ +G 
Sbjct: 360 LNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGF 419

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T ++L++    L S ++G+Q H  +I+     + +  + L+DMYAK+G I  A +
Sbjct: 420 MVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGM-DSYLIDMYAKSGLITTAQQ 478

Query: 320 VFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
           +F+  +   ++  +WN M+ G+ QNG   E   + R M++ +  P+ VTLASIL +C  +
Sbjct: 479 LFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPM 538

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 +Q+H +AI+  +   + +  AL++ YSK G+I  A   F    E + VT+T++I
Sbjct: 539 GTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMI 598

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            +Y  HG+ + ++ +F  ML   ++PDS+ F+ +LSACS+ GLV EGLR F  M  +Y I
Sbjct: 599 SSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKI 658

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGSIGLAKWAA 556
            P +EHY C+ D+LGRVG +VEAY+ +  +  E  +    G+ +GAC++HG   L K  A
Sbjct: 659 QPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVA 718

Query: 557 EKLLELEPSKPVN--YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
            KLLE+E    +   + L+SN+YA+E  W +V R+RK MR     K  GCSW+E+AG ++
Sbjct: 719 NKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVN 778

Query: 615 TFVSSDRSHPQAVHMYAML 633
            F+S D  HPQ   +Y ML
Sbjct: 779 CFMSRDHKHPQCAEIYQML 797



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 156/502 (31%), Positives = 257/502 (51%), Gaps = 23/502 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC--------KAFDD- 116
           +S  LK  A+   L+ GK LH H+++    +   + N +L++Y  C         A+D  
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 117 ----MEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLR 170
               + ++FD MR RN+V WNT+IS  +     +  +  FR M+   +R   ++F ++  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 171 ACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           A  +  D +    L+  ++K+G  F  + FV S+ + +Y + G V+ AR +FD  L R+ 
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 229 VLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            +WN M+  Y  N     AI +F  +M  E    D  TF S + +   L   +LGRQ+H 
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            ++K S  L V++  +++ MY++ G+I  + +VF  M  ++VV+WNTMV  F QNG   E
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
            + L+  M +  F  D VTL ++LS   +L      +Q HAY I++G+Q F  +++ LI+
Sbjct: 407 GLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMDSYLID 465

Query: 408 AYSKCGSIAGALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
            Y+K G I  A Q F   S  + D  TW ++I  Y  +GLS+E   VF KM+   VRP++
Sbjct: 466 MYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNA 525

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           +    +L AC+  G +  G +     I  + +  +    T L D+  + G +  A ++ A
Sbjct: 526 VTLASILPACNPMGTIGLGKQIHGFAIRCF-LNRNVFVGTALLDMYSKSGAITYAENVFA 584

Query: 526 SMPIEPRSDTLGAFIGACKVHG 547
              +E  S T    I +   HG
Sbjct: 585 E-TLEKNSVTYTTMISSYGQHG 605



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 198/389 (50%), Gaps = 20/389 (5%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   ++  +L+ G+QLH++I+K     ++ + N ++ +Y +C +     K+F  M  R+
Sbjct: 328 ALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERD 387

Query: 129 IVTWNTLISGIINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +VTWNT++S  +  G    G +  +   M      +D +T  +LL         E+G++ 
Sbjct: 388 VVTWNTMVSAFVQNGLDDEGLMLVF--AMQKQGFMVDSVTLTALLSLASNLRSQEIGKQA 445

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNC 242
           H+++++ G      + S L+D+Y K G +  A+++F++     RD   WN M++ Y  N 
Sbjct: 446 HAYLIRHGIQFEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNG 504

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L +   AVF  M  + ++ +  T +S++ +C  +G+  LG+QIHG  I+   + +V V T
Sbjct: 505 LSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGT 564

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMY+K+G I  A  VF     KN V++ TM+  +GQ+G G  A+ L   ML     P
Sbjct: 565 ALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKP 624

Query: 363 DEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           D VT  +ILS+C    +  E  ++       Y I+   + +  + + L     + G +  
Sbjct: 625 DSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADML----GRVGRVVE 680

Query: 418 ALQCFGSVKEP--DLVTWTSIIGAYAFHG 444
           A +    + E       W S++GA   HG
Sbjct: 681 AYEFVKGLGEEGNTFGIWGSLLGACRIHG 709



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 226/489 (46%), Gaps = 57/489 (11%)

Query: 120 LFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD-NVRLDHITFNSLLRACVQAD 176
           LFD +     V WNT+I G I  N   +   ++ RM    + + D  TF+S L+AC QA 
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC-------GFVED------ARRVFDEV 223
            +++G+ LH  +L+  FG +  V ++L+++Y  C       G   D       RRVFD +
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R++V WN M+S Y        A  +F  M   G++    +F ++  +   +       
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNAN 238

Query: 284 QIHGLVIKQSFDL--DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
            ++GLV+K   D   D  V +S + MYA+ G +D A  +FD    +N   WNTM+ G+ Q
Sbjct: 239 VLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 342 NGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           N    EA+ L   +++   F  D+VT  S L++   L      RQ+HAY +K+     + 
Sbjct: 299 NNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVV 358

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I NA+I  YS+CGSI  + + F ++ E D+VTW +++ A+  +GL  E + +   M    
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQG 418

Query: 461 VRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNL---MI-------------- 492
              DS+    +LS  S           H  L+  G+++  +   +I              
Sbjct: 419 FMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQ 478

Query: 493 -----SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACK 544
                SDY    D   +  +     + GL  E + +   M    + P + TL + + AC 
Sbjct: 479 LFEKNSDYD--RDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACN 536

Query: 545 VHGSIGLAK 553
             G+IGL K
Sbjct: 537 PMGTIGLGK 545



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 19/285 (6%)

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSL 269
           G    A  +FD +     VLWN ++  +  N +   A+  +  MR     K D +TFSS 
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-------------NGNIDD 316
           + +C    S KLG+ +H  V++  F    +V  SL++MY+                N D 
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             RVFD M  +NVV+WNTM+  + +     EA K+ R M++    P  V+  ++  +   
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWR 230

Query: 377 LSISCETRQVHAYAIKNG---VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           +S       ++   +K G   V  F  + +A+   Y++ G +  A + F    E +   W
Sbjct: 231 MSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIF-MYAELGCVDFAREIFDCCLERNTEVW 289

Query: 434 TSIIGAYAFHGLSKESIEVF-EKMLSHAVRPDSIAFLEVLSACSH 477
            ++IG Y  +    E+I++F + M S     D + FL  L+A S 
Sbjct: 290 NTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQ 334



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 16/180 (8%)

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP--DEVTL 367
           + G+   A  +FD +     V WNT+++GF  N    +A+ L    ++ S  P  D  T 
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDAL-LFYARMRASPSPKFDSYTF 107

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL-------- 419
           +S L +C         + +H + +++   +   + N+L+N YS C +    L        
Sbjct: 108 SSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNN 167

Query: 420 -----QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
                + F ++++ ++V W ++I  Y       E+ ++F  M+   +RP  ++F+ V  A
Sbjct: 168 CDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 304/546 (55%), Gaps = 10/546 (1%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT-----PYFRRMLLDNV 158
           +L  Y +      + K FDEM V +IV+WN LI+  I   GN        +FR MLL  +
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYI---GNRDFDRCWLFFRGMLLQGI 57

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
               +  +  L AC  A +I +GR +   IL  G      V +ALV +YGK G   DA  
Sbjct: 58  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAAS 117

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF  +  RD+V W+ MV+ YA N     A+ +F  M L+G+  +  T  S +++C +LG 
Sbjct: 118 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 177

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
            + G  +H  V  Q     V+V T+LV++Y K G I+ A   F  +  KNVV+W+ +   
Sbjct: 178 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAA 237

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH--AYAIKNGVQ 396
           + +N   R+A+++L  M      P+  T  S+L +C +++   + R++H     +  G++
Sbjct: 238 YARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLE 297

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + + +  AL+N YSKCG++A A   F  +   DLV W S+I   A HG +++++E+FE+M
Sbjct: 298 SDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERM 357

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
               ++P  I F  VL ACSH G++ +G ++F   I D+ I P++EH+ C+ DLLGR G 
Sbjct: 358 RLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGW 417

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           +V++ DLL  MP EP      AF+GAC+ + ++  A WAAE L +L+P K   Y L+SN+
Sbjct: 418 IVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNM 477

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           YA    W DVAR+R+ M+     K  G SWIE+   +H F+S D  HP+   ++A L  +
Sbjct: 478 YAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRL 537

Query: 637 FGLMEE 642
             LM+E
Sbjct: 538 TKLMKE 543



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L+ G  +H  +   G+ + + +   ++++Y KC   +   + F ++  +N+
Sbjct: 169 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNV 228

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V W+ + +       N        RM L+ +  +  TF S+L AC     ++ GRR+H  
Sbjct: 229 VAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHER 288

Query: 188 ILKVGFGL--NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +G GL  + +V +ALV++Y KCG +  A  +FD++   DLVLWN +++  A +   +
Sbjct: 289 TQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTE 348

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            A+ +F  MRLEG++    TF+S++ +C   G    GR+
Sbjct: 349 KALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRK 387



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLH--SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +   L   A    L+QG+++H  + ++  GL + + +   ++++Y KC        +FD+
Sbjct: 266 FVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDK 325

Query: 124 MRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +   ++V WN+LI+     G        F RM L+ ++   ITF S+L AC  A  ++ G
Sbjct: 326 IAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQG 385

Query: 182 RR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           R+   SFI   G          +VDL G+ G++ D+
Sbjct: 386 RKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDS 421


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 191/591 (32%), Positives = 342/591 (57%), Gaps = 4/591 (0%)

Query: 49  LRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           LR  G + +++ + +++ +  AL+      F++QG  +H+ ++K      + + N ++ +
Sbjct: 267 LRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAM 326

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y +     +   +F  M   + ++WN+++SG +  G       ++  M     + D +  
Sbjct: 327 YARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAV 386

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S++ A  ++ +   G ++H++ +K G   +  V ++LVD+Y K   ++    +FD++  
Sbjct: 387 ISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPD 446

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +D+V W  +++ +A N     A+ +F  ++LEG+  D    SS++ +C  L      ++I
Sbjct: 447 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 506

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  +I++    D+++   +VD+Y + GN+D A R+F+ +  K+VVSW +M+  +  NG  
Sbjct: 507 HSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLA 565

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA++L   M +    PD ++L SILS+  SLS   + +++H + I+ G     S+ + L
Sbjct: 566 NEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTL 625

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y++CG++  +   F  ++  DLV WTS+I AY  HG  + +I++F +M   ++ PD 
Sbjct: 626 VDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDH 685

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           IAF+ VL ACSH GL++EG R+   M  +Y + P  EHY CL DLLGR   L EAY  + 
Sbjct: 686 IAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVK 745

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            M +EP ++   A +GAC++H +  L + AA+KLLE++P  P NY LVSNVY++ER W D
Sbjct: 746 GMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKD 805

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           V  +R  M+ +   K PGCSWIE+  ++HTF++ D+SHPQ+  +Y+ L  +
Sbjct: 806 VEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQI 856



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 230/430 (53%), Gaps = 6/430 (1%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSH-IMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           S  S    YS  L++      L +G+Q+H+H I    L N + L  +++ +Y KC    D
Sbjct: 73  SQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVD 132

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
            EKLFD M  + I TWN +I   +  G   G++  Y R M +  + LD  TF  +L+AC 
Sbjct: 133 AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY-REMRVSGIPLDACTFPCILKACG 191

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWN 232
              D   G  +H   +K G+    FV++++V +Y KC  +  AR++FD +  + D+V WN
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M+S Y+ N     A+ +F  M+   +  + +TF + + +C      K G  IH  V+K 
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           S+ ++V VA +L+ MYA+ G + +A  +F  M   + +SWN+M+ GF QNG   EA++  
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            +M      PD V + SI+++      +    Q+HAYA+KNG+ + L + N+L++ Y+K 
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKF 431

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
            S+      F  + + D+V+WT+II  +A +G    ++E+F ++    +  D +    +L
Sbjct: 432 CSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL 491

Query: 473 SACSHGGLVS 482
            ACS   L+S
Sbjct: 492 LACSGLKLIS 501


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 309/559 (55%), Gaps = 5/559 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD--EMRVRNIVTWNTLI 136
           L+   Q+H+ I+     +   L N ++++Y KC   +    LF       + IVTW +LI
Sbjct: 158 LKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLI 217

Query: 137 SGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           + +   N        F +M       +  TF+S+L A      +  G++LHS I K GF 
Sbjct: 218 THLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFD 277

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NL 253
            N FV +ALVD+Y KC  +  A RVFD++  R+LV WN M+  +  N L D A+ VF ++
Sbjct: 278 ANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDV 337

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           +R + +  +  + SS++++C  +G    GRQ+HG+V+K        V  SL+DMY K   
Sbjct: 338 LREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRF 397

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
            D+  ++F  +  ++VV+WN +V+GF QN    EA      M +    PDE + +++L S
Sbjct: 398 FDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHS 457

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
             SL+   +   +H   IK G    + I  +LI  Y+KCGS+  A Q F  +++ ++++W
Sbjct: 458 SASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISW 517

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T++I AY  HG + + IE+FE MLS  + P  + F+ VLSACSH G V EGL +FN M  
Sbjct: 518 TAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 577

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            + + P  EHY C+ DLLGR G L EA   + SMP++P     GA +GAC+ +G++ + +
Sbjct: 578 IHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGR 637

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            AAE+L E+EP  P NY L++N+        +   +R++M  N   K PGCSWI++    
Sbjct: 638 EAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMT 697

Query: 614 HTFVSSDRSHPQAVHMYAM 632
             F + DRSH  +  +Y M
Sbjct: 698 FVFTAHDRSHSSSDEIYKM 716



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 213/443 (48%), Gaps = 30/443 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L  SA    +  G+QLHS I K G    + +   ++ +Y KC       ++FD+M 
Sbjct: 248 FSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMP 307

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGR 182
            RN+V+WN++I G    N        F+ +L +   + + ++ +S+L AC     +  GR
Sbjct: 308 ERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGR 367

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H  ++K G     +V ++L+D+Y KC F ++  ++F  V  RD+V WNV+V  +  N 
Sbjct: 368 QVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQND 427

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A   F +MR EG+  D  +FS++++S  +L +   G  IH  +IK  +  ++ +  
Sbjct: 428 KFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG 487

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+ MYAK G++ DA +VF+G+   NV+SW  M+  +  +G   + ++L   ML     P
Sbjct: 488 SLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEP 547

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYS 410
             VT   +LS+C            H   ++ G+  F S++              +++   
Sbjct: 548 SHVTFVCVLSACS-----------HTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLG 596

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAF 468
           + G +  A +   S+  +P    W +++GA   +G  K   E  E++       P +   
Sbjct: 597 RAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVL 656

Query: 469 LEVLSACSHGGLVSEGLRYFNLM 491
           L   + C+  G + E      LM
Sbjct: 657 LA--NMCTRSGRLEEANEVRRLM 677


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 310/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L +G+QLHS+++K G+ + + ++  +L +YV C       ++F   +  N+
Sbjct: 321 LSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENV 380

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G ++        FR+M +  +  +  T+ S+LR C     +++G ++H+ 
Sbjct: 381 VLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ 440

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K GF  N +V S L+D+Y K G ++ A  +   +   D+V W  ++S YA + L   A
Sbjct: 441 VIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEA 500

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +  F  M   G++ D   FSS +++C  + +   GRQIH       +  D+ +  +LV +
Sbjct: 501 LKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSL 560

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G I +A   F+ + AK+ +SWN ++ GF Q+G   +A+K+   M +        T 
Sbjct: 561 YARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTF 620

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  +++   + +Q+HA  IK G  + + + NALI  Y+KCGSI  A + F  + E
Sbjct: 621 GSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPE 680

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W ++I  Y+ HG   E++ +FEKM      P+ + F+ VLSACSH GLV++GL Y
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGY 740

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M  ++ ++P   HY C+ DL+ R G L  A   +  MPIEP +      + AC VH 
Sbjct: 741 FESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHK 800

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ + ++AA+ LLELEP     Y L+SN+YA    W    + R+MMR+    K PG SWI
Sbjct: 801 NVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWI 860

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F   DR HP A  +Y  L
Sbjct: 861 EVKNSVHAFYVGDRLHPLADKIYEFL 886



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 237/459 (51%), Gaps = 14/459 (3%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L + K+LH  I+KLG  N+  L N+++ VY      D + K+F++M  R++ +W+ +I
Sbjct: 24  GSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKII 83

Query: 137 SGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV-QADDIEVGRRLHSFILKVGF 193
           SG +       V   F  M+ +NV    I+F S+LRAC      I    ++H+ I+  G 
Sbjct: 84  SGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGL 143

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             +  +S+ L+ LY K G +  AR+VFD +  +D V W  M+S ++ N   + AI +F  
Sbjct: 144 LCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCE 203

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G+    + FSS+++ C  +    +G Q+H LV K    L+  V  +LV +Y++  N
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPN 263

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
              A +VF  M +K+ VS+N+++ G  Q G    A++L   M +    PD VT+AS+LS+
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSA 323

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S    C+  Q+H+Y IK G+ + + +E AL++ Y  C  I  A + F + +  ++V W
Sbjct: 324 CASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLW 383

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             ++ A+       ES  +F +M    + P+   +  +L  C+  G +  G +    +I 
Sbjct: 384 NVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIK 443

Query: 494 ---DYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASM 527
               +++      Y C  L D+  + G L  A+ +L ++
Sbjct: 444 TGFQFNV------YVCSVLIDMYAKHGKLDTAHVILRTL 476



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 227/446 (50%), Gaps = 5/446 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++  +Q+H+ I+  GL     + N ++ +Y K        K+FD +  ++ V+W  +ISG
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISG 187

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        F  M    +      F+S+L  C +    +VG +LH+ + K G  L 
Sbjct: 188 FSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLE 247

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +V +ALV LY +      A +VF ++  +D V +N ++S  A     DGA+ +F  M+ 
Sbjct: 248 TYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKR 307

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           + +K D  T +SL+++C + G+   G Q+H  VIK     D++V  +L+D+Y    +I  
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT 367

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F     +NVV WN M+V FG+  +  E+ ++ R M      P++ T  SIL +C S
Sbjct: 368 AHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTS 427

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +       Q+H   IK G Q  + + + LI+ Y+K G +  A     ++ E D+V+WT++
Sbjct: 428 VGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTAL 487

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDY 495
           I  YA H L  E+++ F++ML+  ++ D+I F   +SAC+    +++G + +    +S Y
Sbjct: 488 ISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGY 547

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAY 521
               D      L  L  R G + EAY
Sbjct: 548 S--EDLSIGNALVSLYARCGRIKEAY 571



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 214/414 (51%), Gaps = 10/414 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+     G L  G+Q+H+ ++K G    + + + ++ +Y K    D    +   + 
Sbjct: 418 YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W  LISG    N       +F+ ML   ++ D+I F+S + AC     +  GR+
Sbjct: 478 EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ 537

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+     G+  +  + +ALV LY +CG +++A   F+++  +D + WN ++S +A +  
Sbjct: 538 IHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGY 597

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ VF  M    ++  +FTF S V++   + + K G+QIH ++IK+ FD D+ V+ +
Sbjct: 598 CEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNA 657

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+  YAK G+I+DA R F  M  KN VSWN M+ G+ Q+G G EAV L   M Q    P+
Sbjct: 658 LITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPN 717

Query: 364 EVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
            VT   +LS+C  + +  +      + + ++G+    +    +++  S+ G ++ A +  
Sbjct: 718 HVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFI 777

Query: 423 GSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH--AVRPDSIAFLEVLS 473
             +  EPD   W +++ A   H    +++EV E    H   + P+  A   +LS
Sbjct: 778 EEMPIEPDATIWRTLLSACTVH----KNVEVGEFAAQHLLELEPEDSATYVLLS 827



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 168/330 (50%), Gaps = 1/330 (0%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  LL  C+ +  +   ++LH  ILK+GFG    + + LVD+Y   G ++   +VF+++
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLG 282
             R +  W+ ++S +    + +  + +F+ M  E +     +F+S++ +C G     +  
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
            QIH  +I        +++  L+ +YAKNG I  A +VFD +  K+ VSW  M+ GF QN
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   EA+ L  +M      P     +S+LS C  + +     Q+HA   K G      + 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NAL+  YS+  +   A + F  ++  D V++ S+I   A  G S  ++E+F KM    ++
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           PD +    +LSAC+  G + +G +  + +I
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVI 341



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 6/277 (2%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G+  +  T+  L++ C   GS    +++HG ++K  F  + ++   LVD+Y   G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +D   +VF+ M  ++V SW+ ++ GF +       + L   M++ +  P E++ AS+L +
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 374 CGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C    I      Q+HA  I +G+     I N LI  Y+K G I  A + F ++   D V+
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I  ++ +G  +E+I +F +M +  + P    F  VLS C+   L   G +   L+ 
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV- 239

Query: 493 SDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASM 527
             +      E Y C  L  L  R+   V A  + + M
Sbjct: 240 --FKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKM 274


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 313/569 (55%), Gaps = 7/569 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++GK++H   ++  + + + +   ++ +Y KC   +  ++LF  ++ R++V W+ +I+ 
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           ++  G        F+ M    ++ + +T  S+L AC     +++G+ +H F +K     +
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLM 254
               +ALV +Y KCGF   A   F+ +  RD+V WN +++ YA   +GD   AI +F  +
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ--IGDPYNAIDMFYKL 522

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           RL  +  D  T   +V +C  L     G  IHGL++K  F+ D  V  +L+DMYAK G++
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 315 DDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
             A  +F+     K+ V+WN ++  + QNG  +EA+     M   +F P+ VT  S+L +
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L+   E    HA  I+ G  +   + N+LI+ Y+KCG +  + + F  +   D V+W
Sbjct: 643 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSW 702

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +++  YA HG    +I +F  M    V+ DS++F+ VLSAC H GLV EG + F+ M  
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSD 762

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            YHI PD EHY C+ DLLGR GL  E    +  MP+EP +   GA +G+C++H ++ L +
Sbjct: 763 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGE 822

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            A + L++LEP  P ++ ++S++YA    W D  + R  M D    K PGCSW+E+  ++
Sbjct: 823 VALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           H F   D+SHPQ   M+ +  T+   ME+
Sbjct: 883 HAFRVGDKSHPQLESMHLLWNTLLEKMEK 911



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 242/477 (50%), Gaps = 17/477 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ+G   H  I + GL   + +   ++ +Y K        ++FD+M  R++V WN +I+G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +           +FR M L  V    ++  +L     +  +IE+ R +H ++ +  F  +
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--S 262

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             VS+ L+DLY KCG V+ ARRVFD+++ +D V W  M++ YA N      + +F+ M+L
Sbjct: 263 SAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 257 EGMKGDYFT-FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             ++ +  +  S+ + +  T+   K G++IHG  ++Q  D D+LVAT L+ MYAK G  +
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEK-GKEIHGCALQQRIDSDILVATPLMVMYAKCGETE 381

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A ++F G+  +++V+W+ ++    Q G   EA+ L ++M      P+ VTL SIL +C 
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            LS+    + +H + +K  + + LS   AL++ Y+KCG    AL  F  +   D+VTW S
Sbjct: 442 DLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNS 501

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI--- 492
           +I  YA  G    +I++F K+   A+ PD+   + V+ AC+    + +G     L++   
Sbjct: 502 LINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG 561

Query: 493 --SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             SD H+         L D+  + G L  A  L           T    I A   +G
Sbjct: 562 FESDCHV------KNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNG 612



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 243/478 (50%), Gaps = 11/478 (2%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K   ++  + +H ++ +    + +S  N ++ +Y KC   D   ++FD+M  ++ V+W T
Sbjct: 242 KLSNIELCRSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299

Query: 135 LISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +++G  +  C   V   F +M L NVR++ ++  S   A  +  D+E G+ +H   L+  
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  V++ L+ +Y KCG  E A+++F  +  RDLV W+ +++        + A+++F 
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+ + MK +  T  S++ +C  L   KLG+ IH   +K   D D+   T+LV MYAK G
Sbjct: 420 EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCG 479

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
               A   F+ M+++++V+WN+++ G+ Q GD   A+ +   +   +  PD  T+  ++ 
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLV 431
           +C  L+   +   +H   +K G ++   ++NALI+ Y+KCGS+  A   F       D V
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           TW  II AY  +G +KE+I  F +M      P+S+ F+ VL A ++     EG+  F+  
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHAC 658

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GAFIGACKVHG 547
           I     L ++     L D+  + G L  +  L   M      DT+   A +    VHG
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEM---DHKDTVSWNAMLSGYAVHG 713



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 211/415 (50%), Gaps = 17/415 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A    L+ GK +H   +K  + + LS    ++ +Y KC  F      F+ M  R+I
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN+LI+G    G   N    F ++ L  +  D  T   ++ AC   +D++ G  +H  
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDG 246
           I+K+GF  +C V +AL+D+Y KCG +  A  +F++    +D V WNV+++ Y  N     
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI+ F+ MRLE    +  TF S++ +   L + + G   H  +I+  F  + LV  SL+D
Sbjct: 617 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLID 676

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G +D + ++F+ M  K+ VSWN M+ G+  +G G  A+ L   M +     D V+
Sbjct: 677 MYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 736

Query: 367 LASILSSCGSLSISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
             S+LS+C    +  E R++ H+ + K  ++  L     +++   + G     L   G +
Sbjct: 737 FVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL---GFI 793

Query: 426 K----EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR--PDSIAFLEVLSA 474
           K    EPD   W +++G+   H     ++++ E  L H V+  P + A   VLS+
Sbjct: 794 KVMPVEPDAGVWGALLGSCRMHS----NVKLGEVALDHLVKLEPRNPAHFVVLSS 844



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 162/316 (51%), Gaps = 6/316 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +++ +  LL +C   + +    ++H+ I+  GF  +  ++  L++LY      + AR VF
Sbjct: 31  NYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVF 86

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D       +LWN M+  Y  +   + A+ ++  M  +G++ D +TF+ ++ +C    + +
Sbjct: 87  DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQ 146

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G   HG + ++  + DV +   LVDMY+K G++  A  VFD M  ++VV+WN M+ G  
Sbjct: 147 EGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 206

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+ D  EAV   R M      P  V+L ++      LS     R +H Y  +    +  +
Sbjct: 207 QSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSS--A 264

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N LI+ YSKCG +  A + F  + + D V+W +++  YA +G   E +E+F+KM    
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 461 VRPDSIAFLEVLSACS 476
           VR + ++ +    A +
Sbjct: 325 VRINKVSAVSAFLAAA 340



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E+ H     +   L  +A     ++G   H+ I+++G  +   + N ++ +Y KC   D 
Sbjct: 627 ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDY 686

Query: 117 MEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
            EKLF+EM  ++ V+WN ++SG  +   G      F  M    V++D ++F S+L AC  
Sbjct: 687 SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRH 746

Query: 175 ADDIEVGRRL-HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-------- 225
           A  +E GR++ HS   K     +    + +VDL G+ G       +FDE L         
Sbjct: 747 AGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG-------LFDETLGFIKVMPVE 799

Query: 226 RDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMKGDYF-TFSSLVNSCGTLGSSKLGR 283
            D  +W  ++ SC   + +  G +A+ +L++LE     +F   SS+    G    +   R
Sbjct: 800 PDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKAR 859

Query: 284 -QIHGLVIKQS 293
            +++ L +K++
Sbjct: 860 SKMNDLGLKKT 870



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +LSSC  L+      Q+HA  I +G +   SI + LIN YS       A   F S   P 
Sbjct: 38  LLSSCKHLN---PLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 93

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            + W S+I AY       E++E++  M+   + PD   F  VL AC+    + EG+ +F+
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             I    +  D      L D+  ++G L  A ++   MP
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP 191


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 205/569 (36%), Positives = 314/569 (55%), Gaps = 5/569 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK +H+ ++K GL   + + + ++ +Y KC AF+    LF+EM  +++  WNT+IS    
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   +   YF  M       + +T  + + +C +  D+  G  +H  ++  GF L+ F+
Sbjct: 185 SGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFI 244

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           SSALVD+YGKCG +E A  +F+++  + +V WN M+S Y L       I +F  M  EG+
Sbjct: 245 SSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGV 304

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K    T SSL+  C        G+ +HG  I+     DV V +SL+D+Y K G ++ A +
Sbjct: 305 KPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEK 364

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F  +    VVSWN M+ G+   G   EA+ L  +M +     D +T  S+L++C  L+ 
Sbjct: 365 IFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAA 424

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +++H   I+  +     +  AL++ Y+KCG++  A   F  + + DLV+WTS+I A
Sbjct: 425 LEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITA 484

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y  HG +  ++E+F +ML   V+PD +AFL +LSAC H GLV EG  YFN MI+ Y I+P
Sbjct: 485 YGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIP 544

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT--LGAFIGACKVHGSIGLAKWAAE 557
             EHY+CL DLLGR G L EAY++L   P E R D   L     AC++H +I L    A 
Sbjct: 545 RVEHYSCLIDLLGRAGRLHEAYEILQQNP-EIRDDVELLSTLFSACRLHRNIDLGAEIAR 603

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            L++ +P     Y L+SN+YAS   W +V  +R  M++    K PGCSWIEI  +I  F 
Sbjct: 604 TLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFF 663

Query: 618 SSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
             D SH     ++  L  +   ME+ + S
Sbjct: 664 VEDNSHLHLELVFKCLSYLSDHMEDESKS 692



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 150/503 (29%), Positives = 257/503 (51%), Gaps = 13/503 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLIS 137
           L+QGK +H  ++ LGL N + L   +++ Y+ C  +D  + +FD M     I  WN L++
Sbjct: 19  LKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMA 78

Query: 138 GIINCGGNVTPY--FRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G       V     F ++L    ++ D  T+ S+ +AC       +G+ +H+ ++K G  
Sbjct: 79  GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLM 138

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           ++  V S+LV +YGKC   E A  +F+E+  +D+  WN ++SCY  +     A+  F LM
Sbjct: 139 MDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLM 198

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R  G + +  T ++ ++SC  L     G +IH  +I   F LD  ++++LVDMY K G++
Sbjct: 199 RRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHL 258

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A  +F+ M  K VV+WN+M+ G+G  GD    ++L + M      P   TL+S++  C
Sbjct: 259 EMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVC 318

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
              +   E + VH Y I+N +Q  + + ++L++ Y KCG +  A + F  + +  +V+W 
Sbjct: 319 SRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWN 378

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            +I  Y   G   E++ +F +M    V  D+I F  VL+ACS    + +G    NL+I  
Sbjct: 379 VMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEK 438

Query: 495 YHILPDSEHYT-CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
              L ++E     L D+  + G + EA+ +   +P       L ++      +GS G A 
Sbjct: 439 K--LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP----KRDLVSWTSMITAYGSHGHAY 492

Query: 554 WAAEKLLELEPS--KPVNYALVS 574
            A E   E+  S  KP   A ++
Sbjct: 493 GALELFAEMLQSNVKPDRVAFLA 515



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 189/349 (54%), Gaps = 25/349 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + A+   A+   L +G ++H  ++  G      + + ++ +Y KC   +   ++F++M  
Sbjct: 211 TTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPK 270

Query: 127 RNIVTWNTLISG------IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           + +V WN++ISG      II+C       F+RM  + V+    T +SL+  C ++  +  
Sbjct: 271 KTVVAWNSMISGYGLKGDIISC----IQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLE 326

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G+ +H + ++     + FV+S+L+DLY KCG VE A ++F  +    +V WNVM+S Y  
Sbjct: 327 GKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVA 386

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                 A+ +F+ MR   ++ D  TF+S++ +C  L + + G++IH L+I++  D + +V
Sbjct: 387 EGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVV 446

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L+DMYAK G +D+A  VF  +  +++VSW +M+  +G +G    A++L  +MLQ + 
Sbjct: 447 MGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNV 506

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
            PD V   +ILS+CG           HA  +  G   F    N +IN Y
Sbjct: 507 KPDRVAFLAILSACG-----------HAGLVDEGCYYF----NQMINVY 540



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 197/390 (50%), Gaps = 8/390 (2%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD--EVLC 225
           LLRAC+ +  ++ G+ +H  ++ +G   + F+   L++ Y  C   + A+ VFD  E  C
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            ++ LWN +++ Y  N +   A+ +F  L+    +K D +T+ S+  +CG L    LG+ 
Sbjct: 69  -EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKM 127

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH  +IK    +D++V +SLV MY K    + A  +F+ M  K+V  WNT++  + Q+G+
Sbjct: 128 IHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            ++A++    M +  F P+ VT+ + +SSC  L       ++H   I +G      I +A
Sbjct: 188 FKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y KCG +  A++ F  + +  +V W S+I  Y   G     I++F++M +  V+P 
Sbjct: 248 LVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPT 307

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL---GRVGLLVEAY 521
                 ++  CS    + EG       I +  I PD    + L DL    G+V L  + +
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHGYTIRN-RIQPDVFVNSSLMDLYFKCGKVELAEKIF 366

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
            L+    +   +  +  ++   K+  ++GL
Sbjct: 367 KLIPKSKVVSWNVMISGYVAEGKLFEALGL 396



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   ++   L++GK++H+ I++  L N   +   +L +Y KC A D+   +F  + 
Sbjct: 412 FTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP 471

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W ++I+   + G        F  ML  NV+ D + F ++L AC  A  ++ G  
Sbjct: 472 KRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCY 531

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDE 222
             + ++ V +G+   V   S L+DL G+ G + +A  +  +
Sbjct: 532 YFNQMINV-YGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   L  +L +C +     + + +H   +  G+Q  + +   LIN Y  C     A   F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 423 GSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGL 480
            +++ P ++  W  ++  Y  + +  E++E+FEK+L +  ++PDS  +  V  AC  GGL
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC--GGL 119


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 305/562 (54%), Gaps = 5/562 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK          GK +H+ ++K GL   + + + ++ +Y KC AF+    LF+EM 
Sbjct: 109 YPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMP 168

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++  WNT+IS     G       YF  M       + +T  + + +C +  D+  G  
Sbjct: 169 EKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGME 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  ++  GF L+ F+SSALVD+YGKCG +E A  VF+++  + +V WN M+S Y L   
Sbjct: 229 IHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGD 288

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               I +F  M  EG+K    T SSL+  C        G+ +HG  I+     DV + +S
Sbjct: 289 SISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSS 348

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K G ++ A  +F  +    VVSWN M+ G+   G   EA+ L  +M +    PD
Sbjct: 349 LMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPD 408

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +T  S+L++C  L+   +  ++H   I+  +     +  AL++ Y+KCG++  A   F 
Sbjct: 409 AITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFK 468

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + DLV+WTS+I AY  HG +  ++E+F +ML   ++PD + FL +LSAC H GLV E
Sbjct: 469 CLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDE 528

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT--LGAFIG 541
           G  YFN M++ Y I+P  EHY+CL DLLGR G L EAY++L   P E R D   L     
Sbjct: 529 GCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNP-EIRDDVELLSTLFS 587

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC++H +I L    A  L++ +P     Y L+SN+YAS   W +V  +R  M++    K 
Sbjct: 588 ACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKN 647

Query: 602 PGCSWIEIAGEIHTFVSSDRSH 623
           PGCSWIEI  +I  F   D SH
Sbjct: 648 PGCSWIEINQKILPFFVEDNSH 669



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/496 (30%), Positives = 256/496 (51%), Gaps = 13/496 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLIS 137
           L+QGK +H  ++ LGL N + L   ++++Y+ C  +D  + +FD M     I  WN L++
Sbjct: 19  LKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMA 78

Query: 138 GIINCGGNVTPY--FRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G       V     F ++L    ++ D  T+ S+L+AC       +G+ +H+ ++K G  
Sbjct: 79  GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLM 138

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           ++  V S+LV +Y KC   E A  +F+E+  +D+  WN ++SCY  +     A+  F LM
Sbjct: 139 MDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLM 198

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R  G + +  T ++ ++SC  L     G +IH  +I   F LD  ++++LVDMY K G++
Sbjct: 199 RRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHL 258

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A  VF+ M  K VV+WN+M+ G+G  GD    ++L + M      P   TL+S++  C
Sbjct: 259 EMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVC 318

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
              +   E + VH Y I+N +Q+ + I ++L++ Y KCG +  A   F  + +  +V+W 
Sbjct: 319 SRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWN 378

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            +I  Y   G   E++ +F +M    V PD+I F  VL+ACS    + +G    NL+I  
Sbjct: 379 VMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK 438

Query: 495 YHILPDSEHYT-CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
              L ++E     L D+  + G + EA+ +   +P       L ++      +GS G A 
Sbjct: 439 K--LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP----KRDLVSWTSMITAYGSHGQAY 492

Query: 554 WAAEKLLELEPS--KP 567
            A E   E+  S  KP
Sbjct: 493 VALELFAEMLQSNMKP 508



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 199/390 (51%), Gaps = 8/390 (2%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD--EVLC 225
           LLRAC+ +  ++ G+ +H  ++ +G   + F+   L++LY  C   + A+ VFD  E  C
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            ++ LWN +++ Y  N +   A+ +F  L+    +K D +T+ S++ +CG L    LG+ 
Sbjct: 69  -EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKM 127

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH  ++K    +D++V +SLV MYAK    + A  +F+ M  K+V  WNT++  + Q+G+
Sbjct: 128 IHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            +EA++    M +  F P+ VT+ + +SSC  L       ++H   I +G      I +A
Sbjct: 188 FKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y KCG +  A++ F  + +  +V W S+I  Y   G S   I++F++M +  V+P 
Sbjct: 248 LVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPT 307

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL---GRVGLLVEAY 521
                 ++  CS    + EG       I +  I  D    + L DL    G+V L    +
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHGYTIRN-RIQSDVFINSSLMDLYFKCGKVELAENIF 366

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
            L+    +   +  +  ++   K+  ++GL
Sbjct: 367 KLIPKSKVVSWNVMISGYVAEGKLFEALGL 396



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   L  +L +C +     + + +H   +  G+Q  + +   LIN Y  C     A   F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 423 GSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGL 480
            +++ P ++  W  ++  Y  + +  E++E+FEK+L +  ++PDS  +  VL AC  GGL
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC--GGL 119


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 322/570 (56%), Gaps = 7/570 (1%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK--CKAFDDMEKLFDEMRVRNIVTWNTLI 136
            L+ GKQ+H   +K GL + +S+ N ++++Y K  C  F    ++F++M+  ++++WN++I
Sbjct: 920  LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF--AREVFNDMKHLDLISWNSMI 977

Query: 137  SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRRLHSFILKVGF 193
            S              F  +L + ++ DH T  S+LRAC    D + + R++H   LK G 
Sbjct: 978  SSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGN 1037

Query: 194  GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
              + FV++ L+D+Y K G +E+A  +F      DL  WN M+  Y +   G  A+ +F+L
Sbjct: 1038 IADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSL 1097

Query: 254  MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
            +   G K D  T ++   +CG L     G+QIH   IK  FD D+ V + ++DMY K G+
Sbjct: 1098 IHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 1157

Query: 314  IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
            + +A  VF+ ++A + V+W +M+ G   NG+  +A+++   M Q    PDE T A+++ +
Sbjct: 1158 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 1217

Query: 374  CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
               ++   + RQ+HA  IK    +   +  +L++ Y+KCG+I  A + F  +   ++  W
Sbjct: 1218 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 1277

Query: 434  TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             +++   A HG ++E++ +F+ M SH + PD ++F+ +LSACSH GL SE   Y + M +
Sbjct: 1278 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 1337

Query: 494  DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            DY I P+ EHY+CL D LGR GL+ EA  ++ +MP +  +    A +GAC++ G +   K
Sbjct: 1338 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 1397

Query: 554  WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
              A +L  LEP     Y L+SN+YA+   W DV   RKMM+     K PG SWI++   +
Sbjct: 1398 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNML 1457

Query: 614  HTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            H FV  DRSHPQA  +Y  +  +   + E+
Sbjct: 1458 HLFVVDDRSHPQADIIYDKVEEMMKTIRED 1487



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 244/483 (50%), Gaps = 24/483 (4%)

Query: 65   FYSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQ---NQVLHVYVKCKAFDDMEKL 120
             ++  LK   + G  ++  QL S   + GL  ++ S+Q   N V  V      +D+ + L
Sbjct: 795  LWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-----NWDEGKWL 849

Query: 121  FDEMRV-----------RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNS 167
             D+++             ++  WN  +S  +  G N      F  M   N+  D +T   
Sbjct: 850  ADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLV 909

Query: 168  LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
            +L A    DD+E+G+++H   +K G   +  V+++LV++Y K G    AR VF+++   D
Sbjct: 910  VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 969

Query: 228  LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL-GSSKLGRQIH 286
            L+ WN M+S  A + L + ++ +F  +  EG+K D+FT +S++ +C +L     + RQIH
Sbjct: 970  LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIH 1029

Query: 287  GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
               +K     D  VAT+L+D+Y+K+G +++A  +F      ++  WN M+ G+    DG+
Sbjct: 1030 VHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGK 1089

Query: 347  EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
            +A++L   + +     D++TLA+   +CG L +  + +Q+HA+AIK G  + L + + ++
Sbjct: 1090 KALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGIL 1149

Query: 407  NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            + Y KCG +  A   F  +  PD V WTS+I     +G   +++ ++ +M    V PD  
Sbjct: 1150 DMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEY 1209

Query: 467  AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             F  ++ A S    + +G R  +  +     + D    T L D+  + G + +AY L   
Sbjct: 1210 TFATLIKASSCVTALEQG-RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKK 1268

Query: 527  MPI 529
            M +
Sbjct: 1269 MNV 1271



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 206/449 (45%), Gaps = 38/449 (8%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI----S 137
            GK  H+ I+  G      L N +L +Y KC +     ++FD    R++VTWN ++    +
Sbjct: 640  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 138  GIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
             + +  GN       FR +         +T   +L+ C+ +  +     +H + +K+G  
Sbjct: 700  SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 759

Query: 195  LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
             + FVS ALV++Y KCG + DAR +FD +  RD+VLWN+M+  Y    L   A  +F+  
Sbjct: 760  WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 819

Query: 255  RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
               G++ D F+   ++N                 V + ++D    +A  +    AK    
Sbjct: 820  HRSGLRPDEFSVQLILNG----------------VSEVNWDEGKWLADQVQAYAAKLSLS 863

Query: 315  DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DD   VF          WN  +      GD   A++   +M   +   D VTL  +L++ 
Sbjct: 864  DDNPDVF---------CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAV 914

Query: 375  GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
                     +QVH  A+K+G+ + +S+ N+L+N YSK G    A + F  +K  DL++W 
Sbjct: 915  AGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWN 974

Query: 435  SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS---HGGLVSEGLRYFNLM 491
            S+I + A   L +ES+ +F  +L   ++PD      VL ACS    G  +S  +    L 
Sbjct: 975  SMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALK 1034

Query: 492  ISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
              +   + DS   T L D+  + G + EA
Sbjct: 1035 TGN---IADSFVATTLIDVYSKSGKMEEA 1060



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 145/266 (54%), Gaps = 7/266 (2%)

Query: 78   FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
             L QGKQ+H+H +K G  + L + + +L +Y+KC    +   +F+ +   + V W ++IS
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMIS 1181

Query: 138  GIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRA--CVQADDIEVGRRLHSFILKVGF 193
            G ++ G        + RM    V  D  TF +L++A  CV A  +E GR+LH+ ++K+  
Sbjct: 1182 GCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA--LEQGRQLHANVIKLDC 1239

Query: 194  GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
              + FV ++LVD+Y KCG +EDA R+F ++  R++ LWN M+   A +   + A+ +F  
Sbjct: 1240 VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKS 1299

Query: 254  MRLEGMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+  G++ D  +F  ++++C   G +S+    +H +      + ++   + LVD   + G
Sbjct: 1300 MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 1359

Query: 313  NIDDACRVFDGMTAKNVVSWNTMVVG 338
             + +A +V + M  K   S N  ++G
Sbjct: 1360 LVQEADKVIETMPFKASASINRALLG 1385



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 5/201 (2%)

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG+  H  ++      D  ++ +L+ MY+K G++  A +VFD    +++V+WN ++  + 
Sbjct: 639 LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 341 -----QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
                 +G+ +E + L R +         +TLA +L  C +         VH YAIK G+
Sbjct: 699 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +  + +  AL+N YSKCG +  A   F  ++E D+V W  ++  Y   GL KE+ ++F +
Sbjct: 759 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 818

Query: 456 MLSHAVRPDSIAFLEVLSACS 476
                +RPD  +   +L+  S
Sbjct: 819 FHRSGLRPDEFSVQLILNGVS 839



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 66   YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
            ++  +K S+    L+QG+QLH++++KL   +   +   ++ +Y KC   +D  +LF +M 
Sbjct: 1211 FATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMN 1270

Query: 126  VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGR 182
            VRNI  WN ++ G+   G        F+ M    +  D ++F  +L AC  A    E   
Sbjct: 1271 VRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYE 1330

Query: 183  RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             LHS     G        S LVD  G+ G V++A +V +
Sbjct: 1331 YLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIE 1369


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 200/561 (35%), Positives = 311/561 (55%), Gaps = 3/561 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK       +  G+ +H+ ++K GL   + + + ++ +Y KC  F+   KLFDEM 
Sbjct: 109 YPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMP 168

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++  WNT+IS     G       YF  M       D +T  + + +C +  D++ GR 
Sbjct: 169 DKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGRE 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  ++  GF ++ FVS+ALVD+YGKCG +E A  VF+++  + +V WN M++ Y     
Sbjct: 229 IHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGD 288

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G   I +F  M  EG+K    T +S + +C        G+ +HG +I+     D+ + +S
Sbjct: 289 GISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSS 348

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K G ++ A  +F  M     VSWN M+ G+   G   +A++L  +M +    PD
Sbjct: 349 LMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPD 408

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +T  S+L++C  L+   + R++H   ++  +     +  AL++ Y+KCG++  A   F 
Sbjct: 409 AITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFK 468

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E DLV+WTS+I AY  HG   E++E+F +ML   V+PD + FL +LSACSH GLV +
Sbjct: 469 CLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDD 528

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-IEPRSDTLGAFIGA 542
           GL +FN MI+ Y I+P  EHY+CL  LLGR G L EAY++L S P I      L     A
Sbjct: 529 GLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSA 588

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H ++ L    AE L++ +P     Y ++SN+YAS   W +V  +R  M+D    K P
Sbjct: 589 CRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNP 648

Query: 603 GCSWIEIAGEIHTFVSSDRSH 623
           GCSWIEI  +I  F   D SH
Sbjct: 649 GCSWIEINEKIVPFFVEDNSH 669



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 167/610 (27%), Positives = 304/610 (49%), Gaps = 18/610 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRN 128
           L+ S     L+QGK LH  ++ LGL N + +   ++ +YV C  FD  + +FD +     
Sbjct: 10  LRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFE 69

Query: 129 IVTWNTLISGII-NCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           I   N L++G   NC  +  +  + + M    ++ D  T+ S+L+AC     + +G+ +H
Sbjct: 70  ISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIH 129

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + ++K G  ++  V S+LV +Y KC   E A ++FDE+  +D+  WN ++SCY  +   +
Sbjct: 130 TCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFE 189

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+  F +MR  G + D  T ++ ++SC  L     GR+IH  ++   F +D  V+ +LV
Sbjct: 190 EALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALV 249

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K G ++ A  VF+ M  K VV+WN+M+ G+G  GDG   ++L + M      P   
Sbjct: 250 DMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLT 309

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           TL S L +C   +   E + VH Y I+N +Q  + + ++L++ Y KCG +  A   F  +
Sbjct: 310 TLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLM 369

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            +   V+W  +I  Y   G   +++ +F +M    V PD+I F  VL+ACS    + +G 
Sbjct: 370 PKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGR 429

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
              NL++ + ++  +      L D+  + G + EA+ +   +P E    +  + I A   
Sbjct: 430 EIHNLIV-ERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGS 487

Query: 546 HGSIGLAKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKMMR-----DNCD 598
           HG +  A     ++L+  ++P +    A++S    +      +    +M+         +
Sbjct: 488 HGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIE 547

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL--MEEN---NVSGHCNVLD 653
           H     + +  AG +H      +S+P+    + +L T+F    + +N    V    N++D
Sbjct: 548 HYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLID 607

Query: 654 KEMDECTLWL 663
           K+ D+ + ++
Sbjct: 608 KDPDDSSTYI 617



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 3/363 (0%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR- 226
           LLRA V +  ++ G+ LH  ++ +G   + +V   L+ LY  C   + A+ VFD +    
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           ++ L N +++ Y  NC+ D A+ +F+ LM    +K D +T+ S++ +CG L    LG+ I
Sbjct: 69  EISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMI 128

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  ++K+   +D++V +SLV MYAK    + A ++FD M  K+V  WNT++  + Q+G  
Sbjct: 129 HTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKF 188

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA++    M +  F PD VT+ + +SSC  L      R++H   + +G +    +  AL
Sbjct: 189 EEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAAL 248

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y KCG +  A++ F  +    +V W S+I  Y F G     I++F++M S  V+P  
Sbjct: 249 VDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTL 308

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
                 L ACS    + EG ++ +  I    I PD    + L DL  + G +  A  +  
Sbjct: 309 TTLTSTLMACSQSAQLLEG-KFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFK 367

Query: 526 SMP 528
            MP
Sbjct: 368 LMP 370


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 324/599 (54%), Gaps = 41/599 (6%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q +QLH+ ++K    + L   + +L +Y       D  +LF+ +     + W ++I    
Sbjct: 24  QAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 141 NCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           + G    P+     F  ML   +  DH  F S+L++C    D+ +G  LH +I++VG   
Sbjct: 83  SHG---LPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDF 139

Query: 196 NCFVSSALVDLYGKCGFVEDARR-------VFDEVLCR---------------------- 226
           + +  +AL+++Y K  F+E++ R       VFDE+  R                      
Sbjct: 140 DLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMM 199

Query: 227 ---DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              DLV WN +++  A N L +  + +   M    +K D FT SS++           G+
Sbjct: 200 PEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGK 259

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IHG  I+Q  D D+ VA+SL+DMYAK   + D+CRVF  +T ++ +SWN+++ G  QNG
Sbjct: 260 EIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNG 319

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              E ++  R ML     P   + +SI+ +C  L+     +Q+H Y  +NG    + I +
Sbjct: 320 LFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIAS 379

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +L++ Y+KCG+I  A Q F  ++  D+V+WT++I   A HG + ++IE+FE+M +  ++P
Sbjct: 380 SLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKP 439

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           + +AF+ VL+ACSHGGLV E  +YFN M  D+ I P  EHY  ++DLLGR G L EAYD 
Sbjct: 440 NHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDF 499

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  M I P        + AC+VH +I +A+  A ++LE++P+    Y L++N+Y++ R W
Sbjct: 500 ICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRW 559

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            + A+ R  MR     K P CSWIE+  +++ F++ D SHP    +   +  +  LME+
Sbjct: 560 KEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEK 618



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 216/452 (47%), Gaps = 48/452 (10%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G +    +  H+ +   LK  A    L  G+ LH +I+++GL   L   N ++++Y K +
Sbjct: 96  GMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLR 155

Query: 113 --------------AFDDM------------------EKLFDEMRVRNIVTWNTLISGII 140
                          FD+M                   K+F+ M  +++V+WNT+I+G  
Sbjct: 156 FLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNA 215

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G         R M   N++ D  T +S+L    +  DI  G+ +H   ++ G   + +
Sbjct: 216 RNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIY 275

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+S+L+D+Y KC  V D+ RVF  +  RD + WN +++    N L D  +  F  M +  
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK 335

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K   ++FSS++ +C  L +  LG+Q+HG + +  FD ++ +A+SLVDMYAK GNI  A 
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD M  +++VSW  M++G   +G   +A++L   M      P+ V   ++L++C    
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGG 455

Query: 379 ISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GSVKEPDLVT 432
           +  E  +        + I  GV+ + ++ + L     + G +  A     G    P    
Sbjct: 456 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLL----GRAGRLEEAYDFICGMHIGPTGSI 511

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           W +++ A   H     +I++ EK+ +  +  D
Sbjct: 512 WATLLSACRVH----XNIDMAEKVANRILEVD 539



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 42/448 (9%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            +LLR  +        ++LH+ +LK     +    S L+ +Y     + D+ R+F+ +  
Sbjct: 10  KALLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHF 68

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
              + W  ++ CY  + L   ++  F  M   G+  D+  F S++ SC  L    LG  +
Sbjct: 69  PPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESL 128

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR-------VFDGMT------------- 325
           HG +I+   D D+    +L++MY+K   ++++ R       VFD MT             
Sbjct: 129 HGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS 188

Query: 326 ------------AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
                        K++VSWNT++ G  +NG   E ++++R+M   +  PD  TL+S+L  
Sbjct: 189 EDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPL 248

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
                     +++H  +I+ G+ A + + ++LI+ Y+KC  +A + + F  + E D ++W
Sbjct: 249 IAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISW 308

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR---YFNL 490
            SII     +GL  E +  F +ML   ++P S +F  ++ AC+H   +  G +   Y   
Sbjct: 309 NSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 368

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
              D +I   S     L D+  + G +  A  +   M +     +  A I  C +HG   
Sbjct: 369 NGFDENIFIASS----LVDMYAKCGNIRTAKQIFDRMRLRDMV-SWTAMIMGCALHGQAP 423

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYA 578
            A    E+ +E E  KP + A ++ + A
Sbjct: 424 DAIELFEQ-METEGIKPNHVAFMAVLTA 450


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 313/569 (55%), Gaps = 7/569 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++GK++H   ++  + + + +   ++ +Y KC   +  ++LF  ++ R++V W+ +I+ 
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           ++  G        F+ M    ++ + +T  S+L AC     +++G+ +H F +K     +
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLM 254
               +ALV +Y KCGF   A   F+ +  RD+V WN +++ YA   +GD   AI +F  +
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ--IGDPYNAIDMFYKL 522

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           RL  +  D  T   +V +C  L     G  IHGL++K  F+ D  V  +L+DMYAK G++
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 315 DDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
             A  +F+     K+ V+WN ++  + QNG  +EA+     M   +F P+ VT  S+L +
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L+   E    HA  I+ G  +   + N+LI+ Y+KCG +  + + F  +   D V+W
Sbjct: 643 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSW 702

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +++  YA HG    +I +F  M    V+ DS++F+ VLSAC H GLV EG + F+ M  
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSD 762

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            YHI PD EHY C+ DLLGR GL  E    +  MP+EP +   GA +G+C++H ++ L +
Sbjct: 763 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGE 822

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            A + L++LEP  P ++ ++S++YA    W D  + R  M D    K PGCSW+E+  ++
Sbjct: 823 VALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           H F   D+SHPQ   M+ +  T+   ME+
Sbjct: 883 HAFRVGDKSHPQLESMHLLWNTLLEKMEK 911



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 242/477 (50%), Gaps = 17/477 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ+G   H  I + GL   + +   ++ +Y K        ++FD+M  R++V WN +I+G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +           +FR M L  V    ++  +L     +  +IE+ R +H ++ +  F  +
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--S 262

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             VS+ L+DLY KCG V+ ARRVFD+++ +D V W  M++ YA N      + +F+ M+L
Sbjct: 263 SAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 257 EGMKGDYFT-FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             ++ +  +  S+ + +  T+   K G++IHG  ++Q  D D+LVAT L+ MYAK G  +
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEK-GKEIHGCALQQRIDSDILVATPLMVMYAKCGETE 381

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A ++F G+  +++V+W+ ++    Q G   EA+ L ++M      P+ VTL SIL +C 
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            LS+    + +H + +K  + + LS   AL++ Y+KCG    AL  F  +   D+VTW S
Sbjct: 442 DLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNS 501

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI--- 492
           +I  YA  G    +I++F K+   A+ PD+   + V+ AC+    + +G     L++   
Sbjct: 502 LINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG 561

Query: 493 --SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             SD H+         L D+  + G L  A  L           T    I A   +G
Sbjct: 562 FESDCHV------KNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNG 612



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 243/478 (50%), Gaps = 11/478 (2%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K   ++  + +H ++ +    + +S  N ++ +Y KC   D   ++FD+M  ++ V+W T
Sbjct: 242 KLSNIELCRSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299

Query: 135 LISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +++G  +  C   V   F +M L NVR++ ++  S   A  +  D+E G+ +H   L+  
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  V++ L+ +Y KCG  E A+++F  +  RDLV W+ +++        + A+++F 
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+ + MK +  T  S++ +C  L   KLG+ IH   +K   D D+   T+LV MYAK G
Sbjct: 420 EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCG 479

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
               A   F+ M+++++V+WN+++ G+ Q GD   A+ +   +   +  PD  T+  ++ 
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLV 431
           +C  L+   +   +H   +K G ++   ++NALI+ Y+KCGS+  A   F       D V
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           TW  II AY  +G +KE+I  F +M      P+S+ F+ VL A ++     EG+  F+  
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHAC 658

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GAFIGACKVHG 547
           I     L ++     L D+  + G L  +  L   M      DT+   A +    VHG
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEM---DHKDTVSWNAMLSGYAVHG 713



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 210/415 (50%), Gaps = 17/415 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A    L+ GK +H   +K  + + LS    ++ +Y KC  F      F+ M  R+I
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN+LI+G    G   N    F ++ L  +  D  T   ++ AC   +D++ G  +H  
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDG 246
           I+K+GF  +C V +AL+D+Y KCG +  A  +F++    +D V WNV+++ Y  N     
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI+ F+ MRLE    +  TF S++ +   L + + G   H  +I+  F  + LV  SL+D
Sbjct: 617 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLID 676

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G +  + ++F+ M  K+ VSWN M+ G+  +G G  A+ L   M +     D V+
Sbjct: 677 MYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 736

Query: 367 LASILSSCGSLSISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
             S+LS+C    +  E R++ H+ + K  ++  L     +++   + G     L   G +
Sbjct: 737 FVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL---GFI 793

Query: 426 K----EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR--PDSIAFLEVLSA 474
           K    EPD   W +++G+   H     ++++ E  L H V+  P + A   VLS+
Sbjct: 794 KVMPVEPDAGVWGALLGSCRMHS----NVKLGEVALDHLVKLEPRNPAHFVVLSS 844



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 162/316 (51%), Gaps = 6/316 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +++ +  LL +C   + +    ++H+ I+  GF  +  ++  L++LY      + AR VF
Sbjct: 31  NYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVF 86

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D       +LWN M+  Y  +   + A+ ++  M  +G++ D +TF+ ++ +C    + +
Sbjct: 87  DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQ 146

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G   HG + ++  + DV +   LVDMY+K G++  A  VFD M  ++VV+WN M+ G  
Sbjct: 147 EGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 206

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+ D  EAV   R M      P  V+L ++      LS     R +H Y  +    +  +
Sbjct: 207 QSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSS--A 264

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N LI+ YSKCG +  A + F  + + D V+W +++  YA +G   E +E+F+KM    
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 461 VRPDSIAFLEVLSACS 476
           VR + ++ +    A +
Sbjct: 325 VRINKVSAVSAFLAAA 340



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 21/251 (8%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E+ H     +   L  +A     ++G   H+ I+++G  +   + N ++ +Y KC     
Sbjct: 627 ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXY 686

Query: 117 MEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
            EKLF+EM  ++ V+WN ++SG  +   G      F  M    V++D ++F S+L AC  
Sbjct: 687 SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRH 746

Query: 175 ADDIEVGRRL-HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-------- 225
              +E GR++ HS   K     +    + +VDL G+ G       +FDE L         
Sbjct: 747 XGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG-------LFDETLGFIKVMPVE 799

Query: 226 RDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMKGDYF-TFSSLVNSCGTLGSSKLGR 283
            D  +W  ++ SC   + +  G +A+ +L++LE     +F   SS+    G    +   R
Sbjct: 800 PDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKAR 859

Query: 284 -QIHGLVIKQS 293
            +++ L +K++
Sbjct: 860 SKMNDLGLKKT 870



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +LSSC  L+      Q+HA  I +G +   SI + LIN YS       A   F S   P 
Sbjct: 38  LLSSCKHLN---PLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 93

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            + W S+I AY       E++E++  M+   + PD   F  VL AC+    + EG+ +F+
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             I    +  D      L D+  ++G L  A ++   MP
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP 191


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 297/504 (58%), Gaps = 14/504 (2%)

Query: 139 IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
           +INCG             ++  +   ++ +L  C     ++ GR +H+ I    F  +  
Sbjct: 95  LINCG-------------SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLV 141

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           + + ++++Y KCG +E+A+ +FD++  +D+V W V++S Y+ +     A+A+F  M   G
Sbjct: 142 LLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG 201

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            + + FT SSL+ + GT  S   GRQ+H   +K  +D++V V +SL+DMYA+  ++ +A 
Sbjct: 202 FQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAK 261

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+ + AKNVVSWN ++ G  + G+G   ++L   ML+  F P   T +S+ ++C S  
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSG 321

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + + VHA+ IK+G Q    I N LI+ Y+K GSI  A + F  + + D+V+W SII 
Sbjct: 322 SLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS 381

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            YA HGL  E++++FE+ML   V+P+ I FL VL+ACSH GL+ EG  YF LM   + I 
Sbjct: 382 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIE 440

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
               H+  + DLLGR G L EA   +  MPI+P +   GA +G+C++H ++ L  +AAE+
Sbjct: 441 AQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQ 500

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           + EL+P     + L+SN+YAS     D A++RKMM+++   K P CSW+EI  E+H FV+
Sbjct: 501 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVA 560

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEE 642
           +D SHP    +  M   + G ++E
Sbjct: 561 NDDSHPMREEIQRMWEKISGKIKE 584



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 212/389 (54%), Gaps = 3/389 (0%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S     + YS+ L        L+QG+ +H+HI      + L L N +L++Y KC + ++ 
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           + LFD+M  +++V+W  LISG    G        F +ML    + +  T +SLL+A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
                GR+LH+F LK G+ +N  V S+L+D+Y +   + +A+ +F+ +  +++V WN ++
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + +A    G+  + +F  M  +G +  +FT+SS+  +C + GS + G+ +H  VIK    
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ 339

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
               +  +L+DMYAK+G+I DA +VF  +  +++VSWN+++ G+ Q+G G EA++L   M
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 399

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L+    P+E+T  S+L++C    +  E +       K+ ++A ++    +++   + G +
Sbjct: 400 LKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRL 459

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             A +    +  +P    W +++G+   H
Sbjct: 460 NEANKFIEEMPIKPTAAVWGALLGSCRMH 488



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 130/235 (55%)

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           V +L+    ++ +   +S ++N C  L   K GR IH  +   +F+ D+++   +++MYA
Sbjct: 92  VLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYA 151

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G++++A  +FD M  K++VSW  ++ G+ Q+G   EA+ L   ML   F P+E TL+S
Sbjct: 152 KCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSS 211

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L + G+       RQ+HA+++K G    + + ++L++ Y++   +  A   F S+   +
Sbjct: 212 LLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +V+W ++I  +A  G  +  + +F +ML     P    +  V +AC+  G + +G
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG 326


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 325/574 (56%), Gaps = 12/574 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+++H H+++ G  + + + N ++ +YVKC        +FD M  R+ ++WN +ISG
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 139 IIN---CGGNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
                 C   +  +F  R   +D    D +T  S++ AC    D  +GR +H +++K GF
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDP---DLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                V+++L+ ++   G  ++A  VF ++  +DLV W  M+S Y  N L + A+  + +
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  EG+  D  T +S++++C  LG    G  +H    +      V+VA SL+DMY+K   
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ID A  VF  +  KNV+SW ++++G   N    EA+   + M+  S  P+ VTL S+LS+
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSA 506

Query: 374 CGSL-SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C  + ++SC  +++HA+A++ G+     + NAL++ Y +CG +  A   F S  E D+ +
Sbjct: 507 CARIGALSC-GKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVAS 564

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W  ++  YA  G    ++E+F KM+   V PD I F  +L ACS  G+V++GL YF  M 
Sbjct: 565 WNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESME 624

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             +HI P+ +HY  + DLLGR G L +AY+ +  MPI+P     GA + AC+++ ++ L 
Sbjct: 625 HKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELG 684

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           + AA+ + E++      Y L+ N+YA    W +VAR+RK+MR+N     PGCSW+E+AG+
Sbjct: 685 ELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQ 744

Query: 613 IHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           +H F++ D  HPQ   + A+L   +  ME   +S
Sbjct: 745 VHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLS 778



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 229/406 (56%), Gaps = 3/406 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G ++HS++ K      + L N +L ++V+     +   +F +M  R++ +WN L+ G  
Sbjct: 112 EGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYA 171

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        + RML   +R D  TF  +LR C    D+  GR +H  +++ GF  +  
Sbjct: 172 KAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVD 231

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V +AL+ +Y KCG +  AR VFD +  RD + WN M+S Y  N +    + +F +MR   
Sbjct: 232 VVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFF 291

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D  T +S++++C  LG  +LGR++HG VIK  F  +V V  SL+ M++  G  D+A 
Sbjct: 292 VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAE 351

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF  M  K++VSW  M+ G+ +NG   +AV+    M      PDE+T+AS+LS+C  L 
Sbjct: 352 MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG 411

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  +   +H +A + G+ +++ + N+LI+ YSKC  I  AL+ F  +   ++++WTSII 
Sbjct: 412 LLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIIL 471

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               +  S E++  F++M+  +++P+S+  + VLSAC+  G +S G
Sbjct: 472 GLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCG 516



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 182/329 (55%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            V ++  T+ +LLR C        G R+HS++ K    L   + +AL+ ++ + G + +A
Sbjct: 89  QVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEA 148

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF ++  RDL  WNV+V  YA     D A+ +++ M   G++ D +TF  ++ +CG L
Sbjct: 149 WYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGL 208

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                GR++H  VI+  F+ DV V  +L+ MY K G+I  A  VFD M  ++ +SWN M+
Sbjct: 209 PDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMI 268

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +N    E ++L   M +    PD +T+ S++S+C +L      R+VH Y IK G  
Sbjct: 269 SGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFV 328

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           A +S+ N+LI  +S  G    A   F  ++  DLV+WT++I  Y  +GL ++++E +  M
Sbjct: 329 AEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIM 388

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
               V PD I    VLSAC+  GL+ +G+
Sbjct: 389 EHEGVVPDEITIASVLSACAGLGLLDKGI 417



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 138/276 (50%), Gaps = 13/276 (4%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE         +  L   A  G L +G  LH    + GL + + + N ++ +Y KC+  D
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 116 DMEKLFDEMRVRNIVTWNTLISGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
              ++F  +  +N+++W ++I G+ +N       +F + ++ +++ + +T  S+L AC +
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACAR 509

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              +  G+ +H+  L+ G G + F+ +AL+D+Y +CG +E A   F+    +D+  WN++
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNIL 568

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           ++ YA    G  A+ +F+ M    +  D  TF+SL+ +C     S+ G    GL   +S 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC-----SRSGMVTDGLEYFESM 623

Query: 295 DLDVLVA------TSLVDMYAKNGNIDDACRVFDGM 324
           +    +A       S+VD+  + G ++DA      M
Sbjct: 624 EHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKM 659



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 8/211 (3%)

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           +TA+N    N++++     GD  +A+  L  M +     +E T  ++L  C     + E 
Sbjct: 57  ITAQNP---NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEG 113

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
            +VH+Y  K   +  + + NAL++ + + G +  A   FG + E DL +W  ++G YA  
Sbjct: 114 SRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKA 173

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL--VSEGLRYFNLMISDYHILPDS 501
           G   E++ ++ +ML   +RPD   F  VL  C  GGL  ++ G R  +L +  Y    D 
Sbjct: 174 GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC--GGLPDLARG-REVHLHVIRYGFESDV 230

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +    L  +  + G +  A  +   MP   R
Sbjct: 231 DVVNALITMYVKCGDIFSARLVFDRMPRRDR 261


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 325/574 (56%), Gaps = 12/574 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+++H H+++ G  + + + N ++ +YVKC        +FD M  R+ ++WN +ISG
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 139 IIN---CGGNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
                 C   +  +F  R   +D    D +T  S++ AC    D  +GR +H +++K GF
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDP---DLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                V+++L+ ++   G  ++A  VF ++  +DLV W  M+S Y  N L + A+  + +
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  EG+  D  T +S++++C  LG    G  +H    +      V+VA SL+DMY+K   
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ID A  VF  +  KNV+SW ++++G   N    EA+   + M+  S  P+ VTL S+LS+
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSA 506

Query: 374 CGSL-SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C  + ++SC  +++HA+A++ G+     + NAL++ Y +CG +  A   F S  E D+ +
Sbjct: 507 CARIGALSC-GKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVAS 564

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W  ++  YA  G    ++E+F KM+   V PD I F  +L ACS  G+V++GL YF  M 
Sbjct: 565 WNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESME 624

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             +HI P+ +HY  + DLLGR G L +AY+ +  MPI+P     GA + AC+++ ++ L 
Sbjct: 625 HKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELG 684

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           + AA+ + E++      Y L+ N+YA    W +VAR+RK+MR+N     PGCSW+E+AG+
Sbjct: 685 ELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQ 744

Query: 613 IHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           +H F++ D  HPQ   + A+L   +  ME   +S
Sbjct: 745 VHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLS 778



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 229/406 (56%), Gaps = 3/406 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G ++HS++ K      + L N +L ++V+     +   +F +M  R++ +WN L+ G  
Sbjct: 112 EGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYA 171

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G        + RML   +R D  TF  +LR C    D+  GR +H  +++ GF  +  
Sbjct: 172 KAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVD 231

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V +AL+ +Y KCG +  AR VFD +  RD + WN M+S Y  N +    + +F +MR   
Sbjct: 232 VVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFF 291

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D  T +S++++C  LG  +LGR++HG VIK  F  +V V  SL+ M++  G  D+A 
Sbjct: 292 VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAE 351

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF  M  K++VSW  M+ G+ +NG   +AV+    M      PDE+T+AS+LS+C  L 
Sbjct: 352 MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG 411

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  +   +H +A + G+ +++ + N+LI+ YSKC  I  AL+ F  +   ++++WTSII 
Sbjct: 412 LLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIIL 471

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               +  S E++  F++M+  +++P+S+  + VLSAC+  G +S G
Sbjct: 472 GLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCG 516



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 182/329 (55%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            V ++  T+ +LLR C        G R+HS++ K    L   + +AL+ ++ + G + +A
Sbjct: 89  QVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEA 148

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF ++  RDL  WNV+V  YA     D A+ +++ M   G++ D +TF  ++ +CG L
Sbjct: 149 WYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGL 208

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                GR++H  VI+  F+ DV V  +L+ MY K G+I  A  VFD M  ++ +SWN M+
Sbjct: 209 PDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMI 268

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +N    E ++L   M +    PD +T+ S++S+C +L      R+VH Y IK G  
Sbjct: 269 SGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFV 328

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           A +S+ N+LI  +S  G    A   F  ++  DLV+WT++I  Y  +GL ++++E +  M
Sbjct: 329 AEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIM 388

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
               V PD I    VLSAC+  GL+ +G+
Sbjct: 389 EHEGVVPDEITIASVLSACAGLGLLDKGI 417



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 138/276 (50%), Gaps = 13/276 (4%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE         +  L   A  G L +G  LH    + GL + + + N ++ +Y KC+  D
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 116 DMEKLFDEMRVRNIVTWNTLISGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
              ++F  +  +N+++W ++I G+ +N       +F + ++ +++ + +T  S+L AC +
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACAR 509

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              +  G+ +H+  L+ G G + F+ +AL+D+Y +CG +E A   F+    +D+  WN++
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNIL 568

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           ++ YA    G  A+ +F+ M    +  D  TF+SL+ +C     S+ G    GL   +S 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC-----SRSGMVTDGLEYFESM 623

Query: 295 DLDVLVA------TSLVDMYAKNGNIDDACRVFDGM 324
           +    +A       S+VD+  + G ++DA      M
Sbjct: 624 EHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKM 659



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 8/211 (3%)

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           +TA+N    N++++     GD  +A+  L  M +     +E T  ++L  C     + E 
Sbjct: 57  ITAQNP---NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEG 113

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
            +VH+Y  K   +  + + NAL++ + + G +  A   FG + E DL +W  ++G YA  
Sbjct: 114 SRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKA 173

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL--VSEGLRYFNLMISDYHILPDS 501
           G   E++ ++ +ML   +RPD   F  VL  C  GGL  ++ G R  +L +  Y    D 
Sbjct: 174 GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC--GGLPDLARG-REVHLHVIRYGFESDV 230

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +    L  +  + G +  A  +   MP   R
Sbjct: 231 DVVNALITMYVKCGDIFSARLVFDRMPRRDR 261


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 193/585 (32%), Positives = 316/585 (54%), Gaps = 2/585 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   +  G L  GKQ HS+ +K G+ + + L+  +L +YVKC       + F      N+
Sbjct: 379 LSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENV 438

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G+++        F +M ++ +  +  T+ S+LR C     +++G ++H+ 
Sbjct: 439 VLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQ 498

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           +LK GF  N +VSS L+D+Y K G ++ A ++F  +  +D+V W  M++ YA +     A
Sbjct: 499 VLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEA 558

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M+ +G+  D   F+S +++C  + +   G+QIH       +  D+ V  +LV +
Sbjct: 559 LNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSL 618

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G + DA   FD + +K+ +SWN+++ GF Q+G   EA+ L   M +     +  T 
Sbjct: 619 YARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTF 678

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
              +S+  +++     +Q+HA  IK G  +   + N LI  Y+KCG+I  A + F  + E
Sbjct: 679 GPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPE 738

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + ++W +++  Y+ HG   +++ +FE M    V P+ + F+ VLSACSH GLV EG++Y
Sbjct: 739 KNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKY 798

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M   + ++P  EHY C+ DLLGR GLL  A   +  MPI+P +      + AC VH 
Sbjct: 799 FQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHK 858

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + ++AA  LLELEP     Y L+SN+YA    W    R R+MM+D    K PG SWI
Sbjct: 859 NIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWI 918

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL 652
           E+   +H F + D+ HP    +Y  L  +  L  EN      N L
Sbjct: 919 EVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSL 963



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 252/484 (52%), Gaps = 4/484 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L    K  F + G+QLH  ++K G   +  + N ++ +Y +   F   E++F+ M 
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ V++N+LISG+   G        F++M LD ++ D +T  SLL AC     + VG++
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            HS+ +K G   +  +  AL+DLY KC  ++ A   F      ++VLWNVM+  Y L   
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN 453

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + +  +F  M++EG++ + FT+ S++ +C +L +  LG QIH  V+K  F  +V V++ 
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSV 513

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G +D A ++F  +  K+VVSW  M+ G+ Q+    EA+ L ++M       D
Sbjct: 514 LIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSD 573

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +  AS +S+C  +    + +Q+HA A  +G    LS+ NAL++ Y++CG +  A   F 
Sbjct: 574 NIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFD 633

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D ++W S+I  +A  G  +E++ +F +M       +S  F   +SA ++   V  
Sbjct: 634 KIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKL 693

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +   ++I   H   ++E    L  L  + G + +A      MP E    +  A +   
Sbjct: 694 GKQIHAMIIKTGHD-SETEVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAMLTGY 751

Query: 544 KVHG 547
             HG
Sbjct: 752 SQHG 755



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/403 (32%), Positives = 221/403 (54%), Gaps = 3/403 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G+   G +LH  I+K+G C ++ L  +++ +Y+     D    +FDEM VR +  WN ++
Sbjct: 82  GWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVL 141

Query: 137 SGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGF 193
              +     G V   FRRML + V+ D  T+  +LR C   D       ++H+  +  G+
Sbjct: 142 HRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGY 201

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + FV + L+DLY K GF+  A++VFD +  RD V W  M+S  + +   + A+ +F  
Sbjct: 202 ENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQ 261

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G+    + FSS++++C  +   K+G Q+HGLV+KQ F L+  V  +LV +Y++ GN
Sbjct: 262 MHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
              A +VF+ M  ++ VS+N+++ G  Q G   +A++L + M      PD VT+AS+LS+
Sbjct: 322 FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S+      +Q H+YAIK G+ + + +E AL++ Y KC  I  A + F S +  ++V W
Sbjct: 382 CSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLW 441

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             ++ AY       ES ++F +M    + P+   +  +L  CS
Sbjct: 442 NVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCS 484



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 168/337 (49%), Gaps = 3/337 (0%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           VR +  T+  LL  C+ +     G +LH  ILK+GF     +   L+DLY   G ++ A 
Sbjct: 64  VRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAV 123

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            VFDE+  R L  WN ++  +    +    + +F  M  E +K D  T++ ++  CG  G
Sbjct: 124 TVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG-G 182

Query: 278 SSKLG--RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
                   +IH   I   ++  + V   L+D+Y KNG ++ A +VFDG+  ++ VSW  M
Sbjct: 183 DVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAM 242

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G  Q+G   EAV L   M      P     +S+LS+C  +       Q+H   +K G 
Sbjct: 243 LSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGF 302

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
                + NAL+  YS+ G+   A Q F ++ + D V++ S+I   +  G S +++E+F+K
Sbjct: 303 SLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKK 362

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           M    ++PD +    +LSACS  G +  G ++ +  I
Sbjct: 363 MCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAI 399



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 6/284 (2%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            I   +LM   G++ +  T+  L++ C + G    G ++HG ++K  F  +V++   L+D
Sbjct: 52  GINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMD 111

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y   G++D A  VFD M  + +  WN ++  F         + L R MLQ    PDE T
Sbjct: 112 LYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERT 171

Query: 367 LASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            A +L  CG   +      ++HA  I +G +  L + N LI+ Y K G +  A + F  +
Sbjct: 172 YAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           ++ D V+W +++   +  G  +E++ +F +M +  V P    F  VLSAC+       G 
Sbjct: 232 QKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGE 291

Query: 486 RYFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASM 527
           +   L++     L   E Y C  L  L  R+G  + A  +  +M
Sbjct: 292 QLHGLVLKQGFSL---ETYVCNALVTLYSRLGNFIPAEQVFNAM 332



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 140/277 (50%), Gaps = 15/277 (5%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           +  HS +  ++ A+   A    L QG+Q+H+     G  + LS+ N ++ +Y +C    D
Sbjct: 568 QGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRD 627

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
               FD++  ++ ++WN+LISG    G        F +M      ++  TF   + A   
Sbjct: 628 AYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAAN 687

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
             ++++G+++H+ I+K G      VS+ L+ LY KCG ++DA R F E+  ++ + WN M
Sbjct: 688 VANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAM 747

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-------RQIHG 287
           ++ Y+ +  G  A+++F  M+  G+  ++ TF  ++++C  +G    G       R++HG
Sbjct: 748 LTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHG 807

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           LV K            +VD+  ++G +  A R  + M
Sbjct: 808 LVPKPEH------YACVVDLLGRSGLLSRARRFVEEM 838


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 185/478 (38%), Positives = 294/478 (61%), Gaps = 1/478 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + SLL++CV    IE G++LH+ I +VG   N  +++ LV+LY  C  + +A  +FD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R+L LWNVM+  YA N   + AI+++  MR  G+  D FTF  ++ +C  L + + G++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH  VI+   + DV V  +L+DMYAK G ++ A +VFD +  ++VV WN+M+  + QNG 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             E++ L R M      P E T    +++     +  + +++H Y+ ++G ++   ++ A
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+K GS+  A   F  ++E  +V+W ++I  YA HG + E++++F++M    V PD
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPD 302

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I F+ VL+ACSHGGL++EG  +F  MISD++I P  +HYTC+ DLLG  G L EAY L+
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             M +EP +   GA + +CK+HG++ + + A EKL+ELEP    NY ++SN+YA    W 
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            VARLR +M +    K   CSWIE+  ++H F+S D SHP++  +YA L     LM+E
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKE 480



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 221/419 (52%), Gaps = 17/419 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S+Y+  L+       ++ GKQLH+ I ++G+     L  +++++Y  C +  +   LFD 
Sbjct: 2   SYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR 61

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY------FRRMLLDNVRLDHITFNSLLRACVQADD 177
           +  RN+  WN +I G    G    PY      + +M    +  D  TF  +L+AC     
Sbjct: 62  ISKRNLFLWNVMIRGYAWNG----PYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSA 117

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +E G+++H  +++ G   + FV +AL+D+Y KCG VE AR+VFD++  RD+V WN M++ 
Sbjct: 118 MEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAT 177

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y+ N   D ++A+  +M   G+K    TF   + +    G    G+++HG   +  F+ +
Sbjct: 178 YSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESN 237

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             V T+L+DMYAK+G+++ A  +F+ +  K VVSWN M+ G+  +G   EA+ L ++M +
Sbjct: 238 DKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-K 296

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSI 415
           G   PD +T   +L++C    +  E + +H  ++ +    + ++++   +I+    CG +
Sbjct: 297 GKVLPDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWPTVQHYTCMIDLLGHCGRL 355

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
             A +    ++ EPD   W +++ +   HG  +      EK++   + PD      +LS
Sbjct: 356 EEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVE--LEPDDGGNYVILS 412


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 307/555 (55%), Gaps = 4/555 (0%)

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTP 148
           +LG      L N ++ +Y KC  FDD   +F  ++ +N+ +W  +++             
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           +FR MLL  +    +  +  L AC  A +I +GR +   IL  G      V +ALV LYG
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           K G   DA  VF  +  RD+V W+ MV+ YA N     A+ +F  M L+G+  +  T  S
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            +++C +LG  + G  +H  V  Q     V+V T+LV++Y K G I+ A   F  +  KN
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VV+W+ +   + +N   R+A+++L  M      P+  T  S+L +C +++   + R++H 
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 389 --YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
             + +  G+++ + +  AL+N YSKCG++A A   F  +   DLV W S+I   A HG +
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQT 362

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           ++++E+FE+M    ++P  I F  VL ACSH G++ +G ++F   I D+ I P++EH+ C
Sbjct: 363 EKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGC 422

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + DLLGR G +V++ DLL  MP EP      AF+GAC+ + ++  A WAAE L +L+P K
Sbjct: 423 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRK 482

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
              Y L+SN+YA    W DVAR+R+ M+     K  G SWIE+   +H F+S D  HP+ 
Sbjct: 483 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRI 542

Query: 627 VHMYAMLCTVFGLME 641
             ++A L  +  LM+
Sbjct: 543 GEIHAELQRLTKLMK 557



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
            L   A  G L+ G  +H  +   G+ + + +   ++++Y KC   +   + F ++  +N
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V W+ + +       N        RM L+ +  +  TF S+L AC     ++ GRR+H 
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 187 FILKVGFGL--NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
            I  +G GL  + +V +ALV++Y KCG +  A  +FD++   DLVLWN +++  A +   
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQT 362

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           + A+ +F  MRLEG++    TF+S++ +C   G    GR+
Sbjct: 363 EKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRK 402



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 10/228 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHS--HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +   L   A    L+QG+++H   H++  GL + + +   ++++Y KC        +FD+
Sbjct: 281 FVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDK 340

Query: 124 MRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +   ++V WN+LI+     G        F RM L+ ++   ITF S+L AC  A  ++ G
Sbjct: 341 IAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQG 400

Query: 182 RR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD-LVLWNVMV-SCY 238
           R+   SFI   G          +VDL G+ G++ D+  +   +      V W   + +C 
Sbjct: 401 RKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACR 460

Query: 239 ALNCLGDGAI-AVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQ 284
               + DGAI A  NL +L+  K   Y   S++    G        RQ
Sbjct: 461 TYRNM-DGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQ 507


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 312/566 (55%), Gaps = 8/566 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q+HS I+K+G    +   + +L +Y KC+  +D   +F  M VRN V+WN LI G + 
Sbjct: 121 GQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQ 180

Query: 142 CGGNVTPYFRR--MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   T ++    M  + VR++  TF  LL         ++  +LH  I+K G      +
Sbjct: 181 VGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNAL 240

Query: 200 SSALVDLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            +A +  Y +CG +EDA+RVFD  V  RDLV WN M+  Y ++   + A  +F  M+  G
Sbjct: 241 CNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFG 300

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK--NGNIDD 316
            + D +T++ ++++C        G+  H LVIK+  +  V +  +L+ MY K  N +++ 
Sbjct: 301 FEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEA 360

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F  M +K+ VSWN+++ GF Q G   +A+KL   M       D+   +++L SC  
Sbjct: 361 ALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSD 420

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+I    +Q+H   +K G  +   + ++LI  YSKCG I  A +CF    +   +TW SI
Sbjct: 421 LAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSI 480

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           + AYA HG    ++++F  M    V+ D + F+ VL+ACSH GLV +G      M SDY 
Sbjct: 481 MFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYG 540

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHY C  DL GR G L EA  L+ SMP +P +  L   +GAC+  G+I LA   A
Sbjct: 541 IPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVA 600

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
            +LLE+EP +   Y ++SN+Y   + W D A + ++MR+    KVPG SWIE+  E+H F
Sbjct: 601 SQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAF 660

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEE 642
            + DRSHP +  +Y +L     LMEE
Sbjct: 661 KAEDRSHPYSEDVYQILGE---LMEE 683



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 215/406 (52%), Gaps = 7/406 (1%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFD-DME-KLFDEMRVRNIVTWNTLISGIINCG 143
           H    K G+ + + + N +L  Y KC + D ++  KLFDEM  ++ VTWNT+I+G +  G
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
             G    + + M     + D  TF S+L+    A   ++G+++HS I+K+G+  + +  S
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGS 141

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D+Y KC  VEDA  VF  +  R+ V WN ++  +      D A  + + M+ EG++ 
Sbjct: 142 ALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRV 201

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           +  TF+ L+         KL  Q+H  +IK   +    +  + +  Y++ G ++DA RVF
Sbjct: 202 EDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVF 261

Query: 322 DGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           DG    +++V+WN+M+V +  +    +A  L  +M    F PD  T   ++S+C + +  
Sbjct: 262 DGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHK 321

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCG--SIAGALQCFGSVKEPDLVTWTSIIG 438
              +  HA  IK G++  ++I NALI  Y K    S+  AL  F S+K  D V+W SI+ 
Sbjct: 322 NYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILT 381

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            ++  G S++++++F  M S     D  A+  VL +CS   ++  G
Sbjct: 382 GFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLG 427



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 160/311 (51%), Gaps = 3/311 (0%)

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKC--GFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           H    K G   + +V++ ++  Y KC  G +  A ++FDE+  +D V WN M++ Y  + 
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A      M+  G + D +TF S++          LG+Q+H L++K  ++  V   +
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGS 141

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK   ++DA  VF GM  +N VSWN ++ GF Q GD   A  LL  M +     
Sbjct: 142 ALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRV 201

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++ T A +L+          T Q+H   IK+G++ + ++ NA + AYS+CG +  A + F
Sbjct: 202 EDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVF 261

Query: 423 -GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            G+V   DLVTW S++ AY  H   +++  +F +M      PD   +  V+SAC      
Sbjct: 262 DGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHK 321

Query: 482 SEGLRYFNLMI 492
           + G  +  L+I
Sbjct: 322 NYGKSFHALVI 332



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 186/369 (50%), Gaps = 7/369 (1%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD-EMRVRNIVTWNTLI 136
           F +   QLH  I+K GL    +L N  L  Y +C   +D +++FD  +  R++VTWN+++
Sbjct: 218 FYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSML 277

Query: 137 SGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              +    +   +  F  M       D  T+  ++ AC  A     G+  H+ ++K G  
Sbjct: 278 VAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLE 337

Query: 195 LNCFVSSALVDLYGKCG--FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
            +  + +AL+ +Y K     +E A  +F  +  +D V WN +++ ++     + A+ +F 
Sbjct: 338 ESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFG 397

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR    + D + +S+++ SC  L   +LG+QIH L +K  FD +  VA+SL+ MY+K G
Sbjct: 398 HMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCG 457

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            I+DA + F+  T ++ ++WN+++  + Q+G G  A+ L   M +     D VT  ++L+
Sbjct: 458 IIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLT 517

Query: 373 SCGSLSISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDL 430
           +C  + +  + R V  +     G+   +      ++ + + G +  A     S+  +P+ 
Sbjct: 518 ACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNA 577

Query: 431 VTWTSIIGA 439
           +   +++GA
Sbjct: 578 MVLKTLLGA 586



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L+  +    LQ G+Q+H   +K G  +   + + ++ +Y KC   +D  K F++  
Sbjct: 411 YSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTT 470

Query: 126 VRNIVTWNTLISGIINCG-GNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR- 182
             + +TWN+++      G G+V    F  M    V+LDH+TF ++L AC     +E GR 
Sbjct: 471 KESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRC 530

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD--LVLWNVMVSCYAL 240
            L S     G        +  VDL+G+ G++E+A+ + D +  +   +VL  ++ +C A 
Sbjct: 531 VLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRAC 590

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +   A     L+ +E    ++ T+  L N  G L
Sbjct: 591 GNIELAAQVASQLLEVE--PEEHCTYVILSNMYGHL 624


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 175/468 (37%), Positives = 280/468 (59%), Gaps = 1/468 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++S++ AC Q+ ++   R +HS + +     + F+ ++L+ +Y KCG V DAR VFD + 
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+V W  +++ YA N +   A+ +   M     +   FTF+S + + G  G   +G Q
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H L +K + D DV V ++L+DMYA+   +D A RVFD + +KN VSWN ++ GF + GD
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G   +    +M +  F     T +S+ S+   +    + R VHA+ IK+G +    + N 
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           ++  Y+K GS+  A + F  V + DLVTW +++ A+A +GL KE++  FE++  + ++ +
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I FL VL+ACSHGGLV EG +YF++M  DY++ P+ +HY    DLLGR GLL EA   +
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP+EP +   GA +GAC++H +  + ++AA+ + EL+P       L+ N+YAS   W 
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           D AR+RKMM+     K P CSW+EI   +H FV+ D +HP++  +Y M
Sbjct: 484 DAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRM 531



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 192/385 (49%), Gaps = 3/385 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +   A+   L   + +HSH+ +  L     L N ++H+Y KC A  D   +FD + 
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W  LI+G    +           ML    R    TF S L+A        +G +
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  +K     + +V SAL+D+Y +C  ++ A RVFD +  ++ V WN +++ +A    
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+  +  F  M+  G    +FT+SS+ ++   +G+ + GR +H  +IK    L   VA +
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++ MYAK+G++ DA +VFD +  +++V+WNTM+  F Q G G+EAV    ++ +     +
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ-CF 422
           ++T  S+L++C    +  E +Q         V+  +    + ++   + G +  AL   F
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVF 424

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSK 447
               EP    W +++GA   H  +K
Sbjct: 425 KMPMEPTAAVWGALLGACRMHKNAK 449



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 119/273 (43%), Gaps = 41/273 (15%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  YS      A+ G L+QG+ +H+H++K G      + N +L +Y K  +  D  K+
Sbjct: 262 ATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKV 321

Query: 121 FDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD +  R++VTWNT+++       G     +F  +    ++L+ ITF S+L AC     +
Sbjct: 322 FDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLV 381

Query: 179 EVGRRLHSFI--LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           + G++    +    V   ++ +VS   VDL G+ G +++A                    
Sbjct: 382 KEGKQYFDMMKDYNVEPEIDHYVS--FVDLLGRAGLLKEA-------------------- 419

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
                      I VF +     M+     + +L+ +C    ++K+G+     V +   + 
Sbjct: 420 ----------LIFVFKM----PMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPE- 464

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           D      L ++YA  G  DDA RV   M A  V
Sbjct: 465 DTGPPVLLYNIYASTGQWDDAARVRKMMKATGV 497



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 4/175 (2%)

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           +L G   P      SI+++C         R +H++  ++ +     + N+LI+ Y KCG+
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           ++ A   F  +   D+V+WT +I  YA + +  E++ +   ML    RP    F   L A
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR---VGLLVEAYDLLAS 526
               G    G +   L +  Y++  D    + L D+  R   + + +  +D L S
Sbjct: 173 AGACGGRGIGEQMHALAVK-YNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDS 226


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 209/626 (33%), Positives = 340/626 (54%), Gaps = 55/626 (8%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +   LK   +   L+ G  +H+ +   GL + + + N ++ +Y +C A DD  ++FD
Sbjct: 127 HYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFD 186

Query: 123 EM---RVRNIVTWNTLISGIINCGGNVTPYFRRMLLDN-----VRLDHITFNSLLRACVQ 174
           E+   ++ +IV+WN++++  +  G + T       + N     +R D IT  ++L AC  
Sbjct: 187 EVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAS 246

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              ++ G+++H F ++ G   + FV +ALV +Y KC  + +A +VF+ +  +D+V WN M
Sbjct: 247 VFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAM 306

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS--------------------------- 267
           V+ Y+     D A+++F +M+ E +K D  T+S                           
Sbjct: 307 VTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGL 366

Query: 268 --------SLVNSCGTLGSSKLGRQIHGLVIKQSFDL-------DVLVATSLVDMYAKNG 312
                   SL++ C ++G+   G+Q H  VIK   +L       D+LV   L+DMYAK  
Sbjct: 367 EPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCK 426

Query: 313 NIDDACRVFDGMTAK--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLA 368
           +   A  +FD +  K  NVV+W  M+ G+ Q+G+  +A+KL   + +   S  P+  TL+
Sbjct: 427 SYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLS 486

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKE 427
             L +C  L      RQ+HAYA++N  ++  L + N LI+ YSK G I  A   F ++K 
Sbjct: 487 CALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL 546

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            ++V+WTS++  Y  HG  +E++ +F++M       D I FL VL ACSH G+V +G+ Y
Sbjct: 547 RNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIY 606

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F+ M+  + I P +EHY C+ DLLGR G L EA +L+ +M +EP +    A + A ++H 
Sbjct: 607 FHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHA 666

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I L ++AA KL EL      +Y L+SN+YA+ R W DVAR+R +M+     K PGCSWI
Sbjct: 667 NIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWI 726

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           +      TF   DRSHP++  +Y +L
Sbjct: 727 QGKKSTTTFFVGDRSHPESEQIYNLL 752



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 220/464 (47%), Gaps = 63/464 (13%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLI 136
           L   K  H  I   G     S     +  Y++C A  +   L   +      +  WN LI
Sbjct: 43  LINAKLAHQQIFVHGFTEMFSY---AVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALI 99

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              +  G   +   ++ +M       DH TF  +L+AC +   +  G  +H+ +   G G
Sbjct: 100 RRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLG 159

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVF 251
            N F+ +++V +YG+CG ++DA ++FDEVL R   D+V WN +++ Y     G    A+ 
Sbjct: 160 SNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQG--GQSRTALR 217

Query: 252 NLMRLEG-----MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
              R+       ++ D  T  +++ +C ++ + + G+Q+HG  ++     DV V  +LV 
Sbjct: 218 IAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVS 277

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVV----------------------------- 337
           MYAK   +++A +VF+G+  K+VVSWN MV                              
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 338 ------GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
                 G+ Q G G EA+ + R M      P+ VTLAS+LS C S+      +Q HAY I
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 392 KNGV-------QAFLSIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAF 442
           KN +       +  L + N LI+ Y+KC S   A   F S+  K+ ++VTWT +IG YA 
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 443 HGLSKESIEVFEKMLSH--AVRPDSIAFLEVLSACSHGGLVSEG 484
           HG + +++++F ++     +++P++      L AC+  G +  G
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG 501


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 316/597 (52%), Gaps = 7/597 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+   +  A    L   +QLH+H +K        +   ++ VY K  +  D  + F  + 
Sbjct: 240 YASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLP 299

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              +   N ++ G++  G        F+ M    +  D ++ + +  AC +      G +
Sbjct: 300 NHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ 359

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K GF ++  V +A++DLYGKC  + +A  VF E+  RD V WN +++    N  
Sbjct: 360 VHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 419

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            +  IA  N M   GM+ D FT+ S++ +C  L S + G  +HG  IK    LD  V+++
Sbjct: 420 YEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSST 479

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +VDMY K G I +A ++ D +  + +VSWN+++ GF  N    EA K   +ML     PD
Sbjct: 480 VVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPD 539

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T A++L +C +L+     +Q+H   IK  +     I + L++ Y+KCG++  +L  F 
Sbjct: 540 HFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFE 599

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             ++ D V+W ++I  YA HG   E++E+FE+M    V P+   F+ VL ACSH GL+ +
Sbjct: 600 KAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDD 659

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G RYF LM S Y + P  EH+ C+ D+LGR     EA   + SMP+E  +      +  C
Sbjct: 660 GCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSIC 719

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+   + +A+ AA  +L L+P     Y L+SNVYA    W DV+R R++MR     K PG
Sbjct: 720 KIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPG 779

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH--CNVLDKEMDE 658
           CSWIE+  E+H F++ D+ HP++  +Y ML     L+ E  +SG+   + L  E+DE
Sbjct: 780 CSWIEVQSEMHGFLAGDKVHPRSREVYEMLNN---LIVEMKLSGYEPASALFAEVDE 833



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 212/448 (47%), Gaps = 3/448 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK       L  G Q+H+  +K GL   +   + ++ +Y KC++ +D  + F  M  RN 
Sbjct: 143 LKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNS 202

Query: 130 VTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W   I+G +           F +M    + +    + S+ R+C     +   R+LH+ 
Sbjct: 203 VSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAH 262

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K  F  +  V +A+VD+Y K   + DARR F  +    +   N M+       LG  A
Sbjct: 263 AIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEA 322

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M   G+  D  + S + ++C  +     G Q+H L IK  FD+DV V  +++D+
Sbjct: 323 LQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDL 382

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K   + +A  VF  M  ++ VSWN ++    QN    + +  L +ML+    PD+ T 
Sbjct: 383 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTY 442

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S+L +C  L        VH  AIK+G+     + + +++ Y KCG I  A +    +  
Sbjct: 443 GSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGG 502

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            +LV+W SII  ++ +  S+E+ + F +ML   V+PD   +  VL  C++   +  G + 
Sbjct: 503 QELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQI 562

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVG 515
              +I    +L D    + L D+  + G
Sbjct: 563 HGQIIKQ-EMLGDEYISSTLVDMYAKCG 589



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 210/451 (46%), Gaps = 44/451 (9%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+  H+ ++  G      + N +L +Y +C        +FD M  R+ V+WNT+++ 
Sbjct: 20  LATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 139 IINCG--GNVTPYF--------------------RRMLLDNVRL-----------DHITF 165
             + G  G     F                    R M  D+V L           D  T 
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
             LL+AC   +D+ +G ++H+  +K G  ++    SALVD+YGKC  +EDA R F  +  
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R+ V W   ++    N      + +F  M+  G+      ++S+  SC  +      RQ+
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQL 259

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H   IK  F  D +V T++VD+YAK  ++ DA R F  +    V + N M+VG  + G G
Sbjct: 260 HAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLG 319

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA++L + M +     D V+L+ + S+C  +    +  QVH  AIK+G    + + NA+
Sbjct: 320 AEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAI 379

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y KC ++  A   F  +++ D V+W +II A   +   +++I    +ML + + PD 
Sbjct: 380 LDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDD 439

Query: 466 IAFLEVLSACS-----------HGGLVSEGL 485
             +  VL AC+           HG  +  GL
Sbjct: 440 FTYGSVLKACAGLQSLEYGSVVHGKAIKSGL 470



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 183/398 (45%), Gaps = 36/398 (9%)

Query: 164 TFNSLLRACVQA--DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           TF+ L + C  A    +  G+  H+ +L  GF    FVS+ L+ +Y +CG    AR VFD
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 222 EVLCRDLVLWNVMVSCYA-----------LNCLGDGAIAVFNL----------------- 253
            +  RD V WN M++ YA              + D  +  +N                  
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 254 ---MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
              M   G+  D  T + L+ +CG L    LG QIH + +K   ++DV   ++LVDMY K
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
             +++DA R F GM  +N VSW   + G  QN      ++L   M +      +   AS+
Sbjct: 184 CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASV 243

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
             SC +++     RQ+HA+AIKN   A   +  A+++ Y+K  S+  A + F S+    +
Sbjct: 244 FRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTV 303

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
               +++      GL  E++++F+ M    +  D ++   V SAC+      +GL+   L
Sbjct: 304 QACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCL 363

Query: 491 MI-SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            I S + +  D      + DL G+   LVEAY +   M
Sbjct: 364 AIKSGFDV--DVCVRNAILDLYGKCKALVEAYLVFQEM 399



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 28/251 (11%)

Query: 34  ITNAQK-HDR----SVLSSQLRNSG-TIHESTHSAHSFYSQALKVSAK------------ 75
           IT AQK HDR     ++S     SG ++++ +  A  F+S+ L +  K            
Sbjct: 490 ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDT 549

Query: 76  ---FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
                 ++ GKQ+H  I+K  +     + + ++ +Y KC    D   +F++ +  + V+W
Sbjct: 550 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSW 609

Query: 133 NTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           N +I G  +   G      F RM   NV  +H TF ++LRAC     ++ G R + +++ 
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCR-YFYLMT 668

Query: 191 VGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCLGDG 246
             + L   +   + +VD+ G+    ++A +    + L  D V+W  ++S C     +   
Sbjct: 669 SRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVA 728

Query: 247 AIAVFNLMRLE 257
             A  N++RL+
Sbjct: 729 ETAASNVLRLD 739


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 309/560 (55%), Gaps = 5/560 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH   +  G  + ++L N +L +Y KC+  +   KLFD M  R++V+WN+L+S     G 
Sbjct: 189 LHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGY 248

Query: 145 --NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
              V    + M +     D  TF S+L       ++++GR LH  IL+  F L+  V ++
Sbjct: 249 ICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETS 308

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ +Y K G ++ A R+F+  L +D+VLW  M+S    N   D A+AVF  M   G+K  
Sbjct: 309 LIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSS 368

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T +S++ +C  LGS  LG  +HG + +    +D+    SLV M+AK G++D +  VFD
Sbjct: 369 TATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFD 428

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M  +N+VSWN M+ G+ QNG   +A+ L  +M      PD +T+ S+L  C S      
Sbjct: 429 KMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHL 488

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + +H++ I+NG++  + ++ +L++ Y KCG +  A +CF  +   DLV+W++II  Y +
Sbjct: 489 GKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGY 548

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG  + ++  + K L   ++P+ + FL VLS+CSH GLV +GL  +  M  D+ I P+ E
Sbjct: 549 HGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLE 608

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           H+ C+ DLL R G + EAY+L      +P  D LG  + AC+ +G+  L    A  +L L
Sbjct: 609 HHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIILDACRANGNNELGDTIANDILML 668

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           +P    N+  +++ YAS   W +V      MR     K+PG S+I+I G I TF +   S
Sbjct: 669 KPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKIPGWSFIDIHGTITTFFTDHNS 728

Query: 623 HPQAVHMYAMLCTVFGLMEE 642
           HPQ      ++CT+  L +E
Sbjct: 729 HPQ---FQEIVCTLKFLRKE 745



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 221/426 (51%), Gaps = 8/426 (1%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           A++F S  LK  +       G  LH  I+  GL     + + +++ Y K    D   K+F
Sbjct: 69  AYTFPS-LLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVF 127

Query: 122 DEMRVRNIVTWNTLISGIINCGGNVTPYFR---RMLLDNVRLDHITFNSLLRACVQADDI 178
           D M  RN+V W ++I G  +  G V   F     M    ++   +T  SLL    +   +
Sbjct: 128 DFMPERNVVPWTSII-GCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHV 186

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           +    LH   +  GF  +  +S++++ +YGKC  +E +R++FD +  RDLV WN +VS Y
Sbjct: 187 QC---LHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAY 243

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A        + +   MR++G + D  TF S+++   + G  KLGR +HG +++  FDLD 
Sbjct: 244 AQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDA 303

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V TSL+ MY K GNID A R+F+    K+VV W  M+ G  QNG   +A+ + R ML+ 
Sbjct: 304 HVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKF 363

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
                  T+AS++++C  L        VH Y  ++ +   ++ +N+L+  ++KCG +  +
Sbjct: 364 GVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQS 423

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  + + +LV+W ++I  YA +G   +++ +F +M S    PDSI  + +L  C+  
Sbjct: 424 SIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCAST 483

Query: 479 GLVSEG 484
           G +  G
Sbjct: 484 GQLHLG 489



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 181/357 (50%), Gaps = 9/357 (2%)

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
            V   +  ML  +V  D  TF SLL+AC   +   +G  LH  IL  G  L+ +++S+L+
Sbjct: 52  QVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLI 111

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           + Y K GF + AR+VFD +  R++V W  ++ CY+       A ++F+ MR +G++    
Sbjct: 112 NFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSV 171

Query: 265 TFSSLVNSCGTLGSSKLG--RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           T  SL+      G S+L   + +HG  I   F  D+ ++ S++ MY K  NI+ + ++FD
Sbjct: 172 TMLSLL-----FGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFD 226

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            M  +++VSWN++V  + Q G   E + LL+ M    F PD  T  S+LS   S      
Sbjct: 227 YMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKL 286

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            R +H   ++        +E +LI  Y K G+I  A + F    + D+V WT++I     
Sbjct: 287 GRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQ 346

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           +G + +++ VF +ML   V+  +     V++AC+  G  + G      M    H LP
Sbjct: 347 NGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFR--HELP 401



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 133/256 (51%), Gaps = 13/256 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G    G  +H ++ +  L   ++ QN ++ ++ KC   D    +FD+M  RN+V+WN
Sbjct: 380 AQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWN 439

Query: 134 TLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I+G    G        F  M  D+   D IT  SLL+ C     + +G+ +HSF+++ 
Sbjct: 440 AMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN 499

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G      V ++LVD+Y KCG ++ A+R F+++   DLV W+ ++  Y  +  G+ A+  +
Sbjct: 500 GLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFY 559

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL------V 305
           +     GMK ++  F S+++SC     S  G    GL I +S   D  +A +L      V
Sbjct: 560 SKFLESGMKPNHVIFLSVLSSC-----SHNGLVEQGLNIYESMTRDFGIAPNLEHHACVV 614

Query: 306 DMYAKNGNIDDACRVF 321
           D+ ++ G +++A  ++
Sbjct: 615 DLLSRAGRVEEAYNLY 630


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 232/767 (30%), Positives = 385/767 (50%), Gaps = 128/767 (16%)

Query: 16  KRPLSYLTPALYQ--NQTTTITNAQKHDRSVLSS------QLRNSGTIHESTH------- 60
           K PL +LT   +   + TT +T+   H    L+S      QL   G  H+ TH       
Sbjct: 11  KPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLT 70

Query: 61  ----------------SAHS--FYSQALKVSAKFGFLQQGKQLHSHIMKLGL-------- 94
                           S+H+  +++Q ++ S   GFL+   QL+  + +LG         
Sbjct: 71  FNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFP 130

Query: 95  -----CNKLS----------------------LQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
                C ++                       + N ++ +Y +C A+++  ++FDEMR R
Sbjct: 131 FVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 128 ---NIVTWNTLISGIINCGGNV--TPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVG 181
              ++V+WN++++  +  G ++     F RM  D  +R D ++  ++L AC        G
Sbjct: 191 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 250

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY--- 238
           +++H + L+ G   + FV +A+VD+Y KCG +E+A +VF+ +  +D+V WN MV+ Y   
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 239 --------------------------------ALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
                                           A   LG  A+ VF  MRL G + +  T 
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-------VLVATSLVDMYAKNGNIDDACR 319
            SL++ C   G+   G++ H   IK   +LD       ++V  +L+DMY+K  +   A  
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 430

Query: 320 VFDGMTAKN--VVSWNTMVVGFGQNGDGREAVKLLRDMLQGS--FCPDEVTLASILSSCG 375
           +FD +  K+  VV+W  ++ G  Q+G+  EA++L   MLQ      P+  T++  L +C 
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 490

Query: 376 SLSISCETRQVHAYAIKNGVQ-AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            L      RQ+HAY ++N  + A L + N LI+ YSK G +  A   F ++ + + V+WT
Sbjct: 491 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 550

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           S++  Y  HG  +E++++F +M    + PD + F+ VL ACSH G+V +G+ YFN M  D
Sbjct: 551 SLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 610

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           + ++P +EHY C+ DLL R G L EA +L+  MP++P      A + AC+V+ ++ L ++
Sbjct: 611 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 670

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA +LLELE     +Y L+SN+YA+ RCW DVAR+R +M++    K PGCSW++      
Sbjct: 671 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 730

Query: 615 TFVSSDRSHPQAVHMYAML------CTVFGLMEENNVSGHCNVLDKE 655
           TF + D SHP +  +Y +L          G + +N  + H +V D+E
Sbjct: 731 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALH-DVDDEE 776


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/465 (40%), Positives = 283/465 (60%), Gaps = 6/465 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D IT++ L++ C     ++ G+R+H  I   G+    FV + L+++Y K   +E+A  +F
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  R++V W  M+S Y+ N L D A+    LM  EG++ + FT+SS++ +C  L +  
Sbjct: 114 DEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL- 171

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
             RQ+H  +IK   + DV V ++L+D+Y+K  ++D+A  VFD M  +++V WN+++ GF 
Sbjct: 172 --RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QN DG EA+ L + M +  F  D+ TL S+L +C  L++    RQVH + +K      L 
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLI 287

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NALI+ Y KCGS+  A   F  + E D+++W++++   A +G S++++E+FE M    
Sbjct: 288 LNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESG 347

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            RP+ I  L VL ACSH GLV +G  YF  M   + + P  EHY CL DLLGR G L EA
Sbjct: 348 SRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEA 407

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
             L+  M  EP S T    +GAC+VH ++ LA +AA+K++ELEP     Y L+SN+YA+ 
Sbjct: 408 VKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANT 467

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           + W DVA +RK M +    K PGCSWIE+  +IH F+  D SHP+
Sbjct: 468 QRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPK 512



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 216/392 (55%), Gaps = 30/392 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS+ +K  +  G +Q+GK++H HI   G   K+ + N +L++YVK    ++ E LFDEM 
Sbjct: 58  YSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMP 117

Query: 126 VRNIVTWNTLISGIIN-CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            RN+V+W T+IS   N            M  + VR +  T++S+LRAC   D +   R+L
Sbjct: 118 ERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRAC---DGLPNLRQL 174

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I+K G   + FV SAL+D+Y K   +++A  VFDE+  RDLV+WN ++  +A N  G
Sbjct: 175 HCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDG 234

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ +F  M+  G   D  T +S++ +C  L   +LGRQ+H  V+K  FD D+++  +L
Sbjct: 235 NEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNAL 292

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY K G+++DA   F  M  K+V+SW+TMV G  QNG  R+A++L   M +    P+ 
Sbjct: 293 IDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNY 352

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYSKC 412
           +T+  +L +C            HA  ++ G   F S++              LI+   + 
Sbjct: 353 ITVLGVLFACS-----------HAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRA 401

Query: 413 GSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           G +  A++    ++ EPD VTW +++GA   H
Sbjct: 402 GRLDEAVKLIHEMECEPDSVTWRTLLGACRVH 433



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 4/238 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+   + M   G+  D  T+S L+  C   G+ + G+++H  +  + ++  + V  +L++
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K   +++A  +FD M  +NVVSW TM+  +  N    +A+K L  M +    P+  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            +S+L +C  L      RQ+H   IK G+++ + + +ALI+ YSK   +  AL  F  + 
Sbjct: 158 YSSVLRACDGLP---NLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMP 214

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             DLV W SIIG +A +    E++ +F++M       D      VL AC+   L+  G
Sbjct: 215 TRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELG 272



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           F    D   A++ +  M +     D +T + ++  C +     E ++VH +    G +  
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPK 89

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + N L+N Y K   +  A   F  + E ++V+WT++I AY+ + L+ ++++    M  
Sbjct: 90  MFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFR 148

Query: 459 HAVRPDSIAFLEVLSACS--------HGGLVSEGL 485
             VRP+   +  VL AC         H G++  GL
Sbjct: 149 EGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGL 183


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 306/563 (54%), Gaps = 2/563 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  LH+H +  G  + L + + ++ +Y K        K+FD+M  R+ V WNT+I+G++ 
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 142 --CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
             C  +    F+ M+   VRLD  T  ++L A  +  +++VG  +    LK+GF  + +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            + L+ ++ KC  V+ AR +F  +   DLV +N ++S ++ N   + A+  F  + + G 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           +    T   L+      G   L   I G  +K    L   V+T+L  +Y++   ID A +
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD  + K V +WN M+ G+ Q+G    A+ L ++M+   F P+ VT+ SILS+C  L  
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               + VH       ++  + +  ALI+ Y+KCG+I+ A Q F    E + VTW ++I  
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y  HG   E++++F +ML    +P S+ FL VL ACSH GLV EG   F+ M++ Y I P
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
            +EHY C+ D+LGR G L +A + +  MP+EP     G  +GAC +H    LA+ A+E+L
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
            EL+P     Y L+SN+Y+ ER +   A +R+ ++     K PGC+ IE+ G  H FV  
Sbjct: 602 FELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCG 661

Query: 620 DRSHPQAVHMYAMLCTVFGLMEE 642
           DRSH Q   +YA L  + G M E
Sbjct: 662 DRSHSQTTSIYAKLEELTGKMRE 684



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 233/498 (46%), Gaps = 10/498 (2%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           + H+ +++ G  + L+   ++        A      LF  +   +I  +N LI G     
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSP 85

Query: 144 GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
              +  F   LL N  L    F          DD  +G  LH+  +  GF  N FV+SAL
Sbjct: 86  DASSISFYTHLLKNTTLSPDNFTYAFAISASPDD-NLGMCLHAHAVVDGFDSNLFVASAL 144

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           VDLY K   V  AR+VFD++  RD VLWN M++    NC  D ++ VF  M  +G++ D 
Sbjct: 145 VDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDS 204

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            T ++++ +   +   K+G  I  L +K  F  D  V T L+ +++K  ++D A  +F  
Sbjct: 205 TTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGM 264

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML---QGSFCPDEVTLASILSSCGSLSIS 380
           +   ++VS+N ++ GF  NG+   AVK  R++L   Q       V L  + S  G L ++
Sbjct: 265 IRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLA 324

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
           C    +  + +K+G     S+  AL   YS+   I  A Q F    E  +  W ++I  Y
Sbjct: 325 C---CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGY 381

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A  GL++ +I +F++M++    P+ +    +LSAC+  G +S G +  + +I   ++  +
Sbjct: 382 AQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFG-KSVHQLIKSKNLEQN 440

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
               T L D+  + G + EA  L   +  E  + T    I    +HG    A     ++L
Sbjct: 441 IYVSTALIDMYAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEML 499

Query: 561 ELEPSKPVNYALVSNVYA 578
            L   +P +   +S +YA
Sbjct: 500 HL-GFQPSSVTFLSVLYA 516



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 4/271 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           + VS+ FG L     +    +K G   + S+   +  +Y +    D   +LFDE   + +
Sbjct: 312 IPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTV 371

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
             WN +ISG    G        F+ M+      + +T  S+L AC Q   +  G+ +H  
Sbjct: 372 AAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQL 431

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I       N +VS+AL+D+Y KCG + +A ++FD    ++ V WN M+  Y L+  GD A
Sbjct: 432 IKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEA 491

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVD 306
           + +FN M   G +    TF S++ +C   G  + G +I H +V K   +        +VD
Sbjct: 492 LKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVD 551

Query: 307 MYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           +  + G ++ A      M  +     W T++
Sbjct: 552 ILGRAGQLEKALEFIRKMPVEPGPAVWGTLL 582


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 326/583 (55%), Gaps = 3/583 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+  +Q+H+ I+  GL +   L N +++ YV C    D +++F     +N+V+W  LISG
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISG 96

Query: 139 II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   +C       FR M + N + + +T +S+L A      I + + +H F ++ GF  N
Sbjct: 97  LAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGN 156

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV +ALVD+Y K G +  AR++F+ +  R++V WN +VS Y+ +   + AI +FNLMR 
Sbjct: 157 VFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRR 216

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           +G+  D++T  SL+ +  ++G  ++G  IHG +I+  ++ D  + T+L+D+Y  +  +DD
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDD 276

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCG 375
           A RVF  M  K+V +W  M+ GF        A+K    ML   +   D + L  ILSSC 
Sbjct: 277 AHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCS 336

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                 + R+VHA AIK      + + +A+I+ Y+ CG++  A + F  + E D+V W +
Sbjct: 337 HSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNA 396

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I     +G   ++I++F +M    + PD   F+ VL ACSH G+V EGL+ F  M+   
Sbjct: 397 MIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTS 456

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
           H +P+ +HY C+ D+LGR G L  AY  + +MP +P  D     +GAC++HG+I L    
Sbjct: 457 HDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEI 516

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           ++K+ E+EP+    Y L+SN+YA    W  V   R  +R     K PG S IEI  EI+T
Sbjct: 517 SQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYT 576

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           F++ ++ HPQ   +  +L  +   +++     + NVL +++ +
Sbjct: 577 FMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSD 619



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 208/412 (50%), Gaps = 7/412 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G ++  K +H   ++ G    + ++  ++ +Y K        +LF+ M  
Sbjct: 126 SSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSE 185

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+WN ++SG  + G        F  M    + +D  T  SL+ A +    ++VG  +
Sbjct: 186 RNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGI 245

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H FI++ G+  +  + +AL+D+Y     V+DA RVF E+  +D+  W +M++ ++     
Sbjct: 246 HGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHW 305

Query: 245 DGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           D AI  FN ++ ++ +K D      +++SC   G+ + GR++H L IK  F  ++ V ++
Sbjct: 306 DRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSA 365

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMYA  GN++DA R F GM  K+VV WN M+ G G NG G +A+ L   M      PD
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPD 425

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQ-AFLSIENALINAYSKCGSIAGALQCF 422
           E T  S+L +C    +  E  Q+  + +K       L     +I+   + G +  A    
Sbjct: 426 ESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFI 485

Query: 423 GSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            ++  +PD   +++++GA   HG  K   E+ +K+    + P+   +  +LS
Sbjct: 486 NNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFE--MEPNDAGYYVLLS 535



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 178/329 (54%), Gaps = 8/329 (2%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+LR   +  D++  +++H+ I+  G   N F+S++L++ Y  CG + DA+++F    C+
Sbjct: 29  SILR---KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCK 85

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W +++S  A N     AI VF  M +   K +  T SS++ +   LG  ++ + +H
Sbjct: 86  NVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVH 145

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              ++  F+ +V V T+LVDMY+K G +  A ++F+ M+ +NVVSWN +V G+  +G   
Sbjct: 146 CFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSE 205

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET--RQVHAYAIKNGVQAFLSIENA 404
           EA+ L   M +     D  T+ S++ +  SLS+ C      +H + I+ G +    I+ A
Sbjct: 206 EAIDLFNLMRRKGLLVDFYTIMSLIPA--SLSVGCLQVGTGIHGFIIRTGYENDKHIKTA 263

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRP 463
           L++ Y     +  A + F  +   D+  WT ++  ++       +I+ F KML    ++ 
Sbjct: 264 LMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKL 323

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           DSI  + +LS+CSH G + +G R   L I
Sbjct: 324 DSIVLMGILSSCSHSGALQQGRRVHALAI 352


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 328/589 (55%), Gaps = 6/589 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G+++H+ +++ G    +   N ++ +Y K         +F ++   ++V+WN  ISG
Sbjct: 218 LEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISG 277

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +        +M    +  +  T +S+L+AC  +    +GR++H F++K     +
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSD 337

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +++  LVD+Y K G ++DA++VFD +  RDLVLWN ++S  +       A+++F  MR 
Sbjct: 338 NYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRK 397

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG   +  T ++++ S  +L +    RQ+H L  K  F  D  V   L+D Y K   ++ 
Sbjct: 398 EGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNY 457

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A RVF+   + +++++ +M+    Q   G +A+KL  +ML+    PD   L+S+L++C S
Sbjct: 458 AYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACAS 517

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           LS   + +QVHA+ IK    + +   NAL+  Y+KCGSI  A   F  + E  +V+W+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAM 577

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG  A HG  K +++VF +M+   + P+ I    VL AC+H GLV E  RYFN M   + 
Sbjct: 578 IGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I    EHY C+ DLLGR G L +A +L+ SMP +  +   GA + A +VH    L + AA
Sbjct: 638 IERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAA 697

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           EKL  LEP K   + L++N YAS   W DVA++RK+M+D+   K P  SW+E+  ++HTF
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTF 757

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTL 661
           +  D+SHP+A  +YA L  +  LM +     NV    + +DK   E  L
Sbjct: 758 IVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLL 806



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 148/481 (30%), Positives = 244/481 (50%), Gaps = 8/481 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV-RN 128
           LK +   GF   G QLH+  M  GL   + + N ++ +Y      D+   +FDE    RN
Sbjct: 110 LKCAPDAGF---GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERN 166

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            V+WN L+S  +      +    F  M+   V+ +   F+ ++ AC  + D+E GR++H+
Sbjct: 167 TVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHA 226

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            +++ G+  + F ++ALVD+Y K G +  A  VF +V   D+V WN  +S   L+     
Sbjct: 227 MVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQH 286

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +   M+  G+  + FT SS++ +C   G+  LGRQIHG ++K + D D  +A  LVD
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVD 346

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK+G +DDA +VFD +  +++V WN ++ G        EA+ L   M +  F  +  T
Sbjct: 347 MYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTT 406

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           LA++L S  SL    +TRQVHA A K G  +   + N LI++Y KC  +  A + F    
Sbjct: 407 LAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG 466

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D++ +TS+I A +     +++I++F +ML   + PD      +L+AC+      +G +
Sbjct: 467 SYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
               +I     + D      L     + G + +A    + +P E    +  A IG    H
Sbjct: 527 VHAHLIK-RQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQH 584

Query: 547 G 547
           G
Sbjct: 585 G 585



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 221/449 (49%), Gaps = 15/449 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG  +H+H++K GL      +N +L  Y KC+      ++FDE+     V+W++L++ 
Sbjct: 20  LLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTA 77

Query: 139 IINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             N   N  P      FR M   +VR +      +L+    A D   G +LH+  +  G 
Sbjct: 78  YSN---NAMPRDALGAFRSMRSCSVRCNEFVLPVVLKC---APDAGFGTQLHALAMATGL 131

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNCLGDGAIAVFN 252
           G + FV++ALV +YG  GFV++AR VFDE  C R+ V WN ++S Y  N     A+ VF 
Sbjct: 132 GGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFG 191

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M   G++ + F FS +VN+C      + GR++H +VI+  +D DV  A +LVDMY+K G
Sbjct: 192 EMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLG 251

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +I  A  VF  +   +VVSWN  + G   +G  + A++LL  M      P+  TL+SIL 
Sbjct: 252 DIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C         RQ+H + +K    +   I   L++ Y+K G +  A + F  + + DLV 
Sbjct: 312 ACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I   +      E++ +F +M       +      VL + +    +S+  R  + + 
Sbjct: 372 WNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISD-TRQVHALA 430

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
                L DS     L D   +   L  AY
Sbjct: 431 EKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 193/386 (50%), Gaps = 14/386 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  LK  A  G    G+Q+H  ++K    +   +   ++ +Y K    DD +K+FD +  
Sbjct: 307 SSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQ 366

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R++V WN LISG  +          F RM  +   ++  T  ++L++    + I   R++
Sbjct: 367 RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQV 426

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+   K+GF  +  V + L+D Y KC  +  A RVF++    D++ +  M++  +    G
Sbjct: 427 HALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHG 486

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + AI +F  M  +G+  D F  SSL+N+C +L + + G+Q+H  +IK+ F  DV    +L
Sbjct: 487 EDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNAL 546

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V  YAK G+I+DA   F G+  K VVSW+ M+ G  Q+G G+ A+ +   M+     P+ 
Sbjct: 547 VYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNH 606

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA------LINAYSKCGSIAGA 418
           +T+ S+L +C    +  E ++       N ++    IE        +I+   + G +  A
Sbjct: 607 ITMTSVLCACNHAGLVDEAKRYF-----NSMKEMFGIERTEEHYACMIDLLGRAGKLDDA 661

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFH 443
           ++   S+  + +   W +++ A   H
Sbjct: 662 MELVNSMPFQTNAAVWGALLAASRVH 687



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 175/369 (47%), Gaps = 13/369 (3%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T   LL        +  G  +H+ +LK G  L     + L+  Y KC     ARRVFDE+
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSG--LFAVFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
                V W+ +V+ Y+ N +   A+  F  MR   ++ + F    ++      G    G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGT 120

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD-GMTAKNVVSWNTMVVGFGQN 342
           Q+H L +      D+ VA +LV MY   G +D+A  VFD     +N VSWN ++  + +N
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSC-GSLSISCETRQVHAYAIKNGVQAFLSI 401
                AVK+  +M+ G   P+E   + ++++C GS  +    R+VHA  I+ G    +  
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEA-GRKVHAMVIRTGYDKDVFT 239

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            NAL++ YSK G I  A   FG V E D+V+W + I     HG  + ++E+  +M S  +
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVE 519
            P+      +L AC+  G  + G +    M+       DS++Y    L D+  + GLL +
Sbjct: 300 VPNVFTLSSILKACAGSGAFNLGRQIHGFMVKAN---ADSDNYIAFGLVDMYAKHGLLDD 356

Query: 520 AYDLLASMP 528
           A  +   +P
Sbjct: 357 AKKVFDWIP 365


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 330/619 (53%), Gaps = 40/619 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  KQ+HS I+K GL N     ++++  +       D+     LF  +R  N V WN +
Sbjct: 41  LQTLKQIHSQIIKTGLHNTHFALSKLIE-FCAVSPHGDLSYALSLFKTIRNPNHVIWNHM 99

Query: 136 ISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G+ +         Y+  M+      +  TF S+ ++C +      G+++H+ +LK+G 
Sbjct: 100 IRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGL 159

Query: 194 GLNCFVSSALVDLYGKCG-------------------------------FVEDARRVFDE 222
             N FV ++L+++Y + G                               F+++AR +FDE
Sbjct: 160 EHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDE 219

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KL 281
           +  RD+V WN M+S YA +   + A+A F  MR   +  +  T  S++++C   GSS +L
Sbjct: 220 IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQL 279

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G  +   +  +    ++ +   L+DMY K G++++A  +F+ +  KNVVSWN M+ G+  
Sbjct: 280 GNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTH 339

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFL 399
               +EA+ L R M+Q +  P++VT  SIL +C +L      + VHAY  KN   ++  +
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           ++  +LI+ Y+KCG +A A + F  +    L TW ++I  +A HG +  ++ +F +M S 
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSE 459

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
              PD I F+ VL+AC H GL+S G RYF+ MI DY + P   HY C+ DL GR GL  E
Sbjct: 460 GFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDE 519

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A  L+ +M ++P      + +GAC++H  I LA+  A+ L ELEP  P  Y L+SN+YA 
Sbjct: 520 AETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAG 579

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W DVA++R  + DN   KVPGCS IE+   +H F+  D+ HPQ+  +Y ML  +   
Sbjct: 580 AGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMR 639

Query: 640 MEENNVSGHCNVLDKEMDE 658
           +E+       + +  +MDE
Sbjct: 640 LEKAGFVPDTSEVLYDMDE 658



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 215/444 (48%), Gaps = 44/444 (9%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK---- 110
           I   T      +    K   K     +GKQ+H+H++KLGL +   +   ++++Y +    
Sbjct: 120 ISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGEL 179

Query: 111 --------------------------CKAF-DDMEKLFDEMRVRNIVTWNTLISGIINCG 143
                                      K F D+  +LFDE+ VR++V+WN +ISG    G
Sbjct: 180 VNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSG 239

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA-DDIEVGRRLHSFILKVGFGLNCFVS 200
                  +F  M    V  +  T  S+L AC Q+   +++G  + S+I   G G N  + 
Sbjct: 240 RVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLV 299

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCLGDGAIAVFNLMRLEGM 259
           + L+D+Y KCG +E+A  +F+++  +++V WNVM+  Y  ++C  + A+ +F  M    +
Sbjct: 300 NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKE-ALGLFRRMMQSNI 358

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDA 317
             +  TF S++ +C  LG+  LG+ +H  V K  +S    V + TSL+DMYAK G++  A
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA 418

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            R+FD M  K++ +WN M+ GF  +G    A+ L   M    F PD++T   +L++C   
Sbjct: 419 KRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHA 478

Query: 378 SISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTS 435
            +    R+  +  I++  V   L     +I+ + + G    A     +++ +PD   W S
Sbjct: 479 GLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCS 538

Query: 436 IIGAYAFHGLSKESIEVFEKMLSH 459
           ++GA   H      IE+ E +  H
Sbjct: 539 LLGACRIH----RRIELAESVAKH 558



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 177/389 (45%), Gaps = 29/389 (7%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA--KNGNIDDACRVFDGMT 325
           +L+++C TL + K   QIH  +IK          + L++  A   +G++  A  +F  + 
Sbjct: 33  TLLSNCKTLQTLK---QIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR 89

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
             N V WN M+ G   +     A++    M+     P+E T  SI  SC  +  + E +Q
Sbjct: 90  NPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQ 149

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           VHA+ +K G++    +  +LIN Y++ G +  A   F      D V++T++I  YA  G 
Sbjct: 150 VHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGF 209

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
             E+ E+F+++    VR D +++  ++S  +  G V E + +F  M     + P+     
Sbjct: 210 LDEARELFDEI---PVR-DVVSWNAMISGYAQSGRVEEAMAFFEEM-RRAKVTPNVSTML 264

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI----GACKVHGSIGLAKWAAEKLLE 561
            +     + G  ++  + + S  IE R   LG+ I    G   ++   G  + A+    +
Sbjct: 265 SVLSACAQSGSSLQLGNWVRSW-IEDRG--LGSNIRLVNGLIDMYVKCGDLEEASNLFEK 321

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARL-RKMMRDNCDHK-------VPGCS---WIEIA 610
           ++    V++ ++   Y    C+ +   L R+MM+ N D         +P C+    +++ 
Sbjct: 322 IQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLG 381

Query: 611 GEIHTFVSSD-RSHPQAVHMYAMLCTVFG 638
             +H +V  + +S    V ++  L  ++ 
Sbjct: 382 KWVHAYVDKNMKSMKNTVALWTSLIDMYA 410


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 298/504 (59%), Gaps = 15/504 (2%)

Query: 139 IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
           +INCG             ++  +   ++ +L  C     ++ GR +H+ I    F  +  
Sbjct: 95  LINCG-------------SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLV 141

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           + + ++++Y KCG +E+A+ +FD++  +D+V W V++S Y+ +     A+A+F  M   G
Sbjct: 142 LLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG 201

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            + + FT SSL+ + GT  S   GRQ+H   +K  +D++V V +SL+DMYA+  ++ +A 
Sbjct: 202 FQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAK 261

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+ + AKNVVSWN ++ G  + G+G   ++L   ML+  F P   T +S+L+   S S
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGS 321

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  + + VHA+ IK+G Q    I N LI+ Y+K GSI  A + F  + + D+V+W SII 
Sbjct: 322 LE-QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS 380

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            YA HGL  E++++FE+ML   V+P+ I FL VL+ACSH GL+ EG  YF LM   + I 
Sbjct: 381 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIE 439

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
               H+  + DLLGR G L EA   +  MPI+P +   GA +GAC++H ++ L  +AAE+
Sbjct: 440 AQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQ 499

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           + EL+P     + L+SN+YAS     D A++RKMM+++   K P CSW+EI  E+H FV+
Sbjct: 500 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVA 559

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEE 642
           +D SHP    +  M   + G ++E
Sbjct: 560 NDDSHPMREEIQRMWEKISGKIKE 583



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 213/389 (54%), Gaps = 4/389 (1%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S     + YS+ L        L+QG+ +H+HI      + L L N +L++Y KC + ++ 
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           + LFD+M  +++V+W  LISG    G        F +ML    + +  T +SLL+A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
                GR+LH+F LK G+ +N  V S+L+D+Y +   + +A+ +F+ +  +++V WN ++
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + +A    G+  + +F  M  +G +  +FT+SS++ +C + GS + G+ +H  VIK    
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQ 338

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
               +  +L+DMYAK+G+I DA +VF  +  +++VSWN+++ G+ Q+G G EA++L   M
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 398

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L+    P+E+T  S+L++C    +  E +       K+ ++A ++    +++   + G +
Sbjct: 399 LKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRL 458

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             A +    +  +P    W +++GA   H
Sbjct: 459 NEANKFIEEMPIKPTAAVWGALLGACRMH 487



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 130/235 (55%), Gaps = 1/235 (0%)

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           V +L+    ++ +   +S ++N C  L   K GR IH  +   +F+ D+++   +++MYA
Sbjct: 92  VLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYA 151

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G++++A  +FD M  K++VSW  ++ G+ Q+G   EA+ L   ML   F P+E TL+S
Sbjct: 152 KCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSS 211

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L + G+       RQ+HA+++K G    + + ++L++ Y++   +  A   F S+   +
Sbjct: 212 LLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +V+W ++I  +A  G  +  + +F +ML     P    +  VL AC+  G + +G
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG 325


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/603 (32%), Positives = 324/603 (53%), Gaps = 39/603 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QGKQLH+H + LG  N L L  +++  Y       D   +     + N + WN LIS 
Sbjct: 57  LPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISS 116

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI-LKVGFGL 195
            +N G  G     +R M+   VR D+ T+ S+L+AC +  D++ GR +H  I    G   
Sbjct: 117 YVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRW 176

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N +V ++LV +YGK G ++ ARR+F+++  RD V WN ++S YA   L   A  +F  MR
Sbjct: 177 NLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMR 236

Query: 256 LEGMKGDYFTFSSL-----------------------------------VNSCGTLGSSK 280
           L G + +  T++++                                   + +C  +G+ K
Sbjct: 237 LAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIK 296

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG  IH   I+  FD    V  +L+ MY++  ++  A  +F  +  K++ +WN+M+ G+ 
Sbjct: 297 LGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYT 356

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFL 399
                 EA  L R+ML     P+ VT+ASIL  C  ++   + ++ H Y ++  G + +L
Sbjct: 357 HMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYL 416

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + N+L+  Y++ G +  A + F S++  D VT+TS+I  Y   G  K ++++F++M+ H
Sbjct: 417 LLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKH 476

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD +  + VLSACSH GLV+EG   F  M + Y I+P  EH++C+ DL GR GLL +
Sbjct: 477 RIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNK 536

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A  ++ SMP  P +      +GAC++HG+  + +WAAEKLLE++P  P  Y L++N++A+
Sbjct: 537 AKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAA 596

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W  +A +R  MRD    K PGC+W+++      FV  D S   +  +Y +L  +  L
Sbjct: 597 AGRWSKLAEVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDL 656

Query: 640 MEE 642
           M++
Sbjct: 657 MKD 659



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 182/405 (44%), Gaps = 46/405 (11%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           + +SLL +C     +  G++LH+  + +GF  +  +   LV  Y     + DA  +    
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              + + WN+++S Y  N L   A++ +  M  +G++ D FT+ S++ +CG       GR
Sbjct: 103 DIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGR 162

Query: 284 QIH-GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           ++H  +        ++ V  SLV MY K G +D A R+F+ M  ++ VSWN ++  +   
Sbjct: 163 EVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASR 222

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSC-------GSLSISCETRQ---------- 385
           G  +EA +L  +M       + +T  +I   C       G+L +  + R+          
Sbjct: 223 GLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAM 282

Query: 386 ------------------VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
                             +HA AI++    F ++ NALI  YS+C  +  A   F S+K 
Sbjct: 283 IIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKT 342

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             L TW S++  Y     S+E+  +F +ML   + P+ +    +L  C+    + +G  +
Sbjct: 343 KSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEF 402

Query: 488 FNLMI-----SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
              ++      DY +L +S     L ++  R G ++ A  +  S+
Sbjct: 403 HCYIMRREGFEDYLLLWNS-----LVEMYARSGKVLSAKRVFDSL 442



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 247 AIAVFNLMRLEGMKGD----YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           A   F+L++L     +      + SSL+ SC  L S   G+Q+H   I   F+  +++  
Sbjct: 21  AFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVP 80

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LV  Y+    + DA  +       N + WN ++  +  NG   EA+   R+M+     P
Sbjct: 81  KLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRP 140

Query: 363 DEVTLASILSSCGSLSISCETRQVH-AYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           D  T  S+L +CG        R+VH +     G +  L + N+L++ Y K G +  A + 
Sbjct: 141 DNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRL 200

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           F  + E D V+W  II  YA  GL KE+ E+FE+M       + I +  +   C
Sbjct: 201 FNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGC 254



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%)

Query: 74  AKFGFLQQGKQLHSHIMKL-GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
           A+   LQQGK+ H +IM+  G  + L L N ++ +Y +       +++FD +R R+ VT+
Sbjct: 391 ARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTY 450

Query: 133 NTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
            +LI+  GI   G      F  M+   ++ D +T  ++L AC  +  +  G  L   +  
Sbjct: 451 TSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMST 510

Query: 191 VGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMV 235
           + +G+   V   S +VDL+G+ G +  A++V   +  R    +W  +V
Sbjct: 511 L-YGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLV 557


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/569 (35%), Positives = 316/569 (55%), Gaps = 3/569 (0%)

Query: 43  SVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQN 102
           + L  +  +S    E TH + S Y + L++  +   L+QG  +HSHI++ G  + L L  
Sbjct: 17  TFLKQRFHHSPCEPELTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLST 76

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL 160
           +++  YVK     +  K+FD M  RN+V+W   ISG    G   +    F +M    VR 
Sbjct: 77  KLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRA 136

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +  T+ S+LRAC     +E G ++H  I K  F  N FV SALVDL+ KCG +EDAR +F
Sbjct: 137 NQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLF 196

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  RD+V WN ++  YA     D +  +F  M  EG+  D FT  S++ +     +  
Sbjct: 197 ETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLI 256

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
              QIHG++I+  F   + +  SL+D YAK+  +  A  ++  M  K+V+S+  ++ G+ 
Sbjct: 257 KVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYA 316

Query: 341 QN-GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           +     REA+ L +DM       D+VT  ++L+ C  ++     RQ+HA AIK      +
Sbjct: 317 RKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDV 376

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           +  NAL++ Y+K G I  A + F  +KE ++++WTS+I  Y  HG   E+I +++KM   
Sbjct: 377 ATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYE 436

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++P+ I FL +L ACSH GL  EG   FN MI+ Y+ILP +EHY+C+ DL  R G L E
Sbjct: 437 GLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEE 496

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           AY+++  M I+P S   GA +GAC ++G + L + AA  LL ++P    NY +++ +YA+
Sbjct: 497 AYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAA 556

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
              W    R+R +M      K+PG S I+
Sbjct: 557 SGSWDKACRMRNLMEYRSLKKIPGYSIIQ 585


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/587 (34%), Positives = 320/587 (54%), Gaps = 14/587 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA    +  G QLH  ++KLG  +   L N ++ +Y KC       ++F  M  RN+
Sbjct: 11  LRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNV 70

Query: 130 VTWNTLISGIINCGGNVTPYFRRM----LLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           V+W  L+ G +   G+     R +     L +V  +  T ++ L+AC    D+  G  +H
Sbjct: 71  VSWTALMVGFLR-HGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIH 129

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              ++ GF  +  V+++LV LY K G + DARRVFD  + R+LV WN M+S YA    G 
Sbjct: 130 GACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGR 189

Query: 246 GAIAVFNLMRL-----EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DV 298
            ++ VF  M+      E  + D FTF+SL+ +CG+LG+++ G Q+H  ++ +      + 
Sbjct: 190 DSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNA 249

Query: 299 LVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           ++A +L+DMY K    +  A +VF+ +  KN + W T++VG  Q G  +EA++L      
Sbjct: 250 ILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWS 309

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
                D   L+S++      ++  + RQVH Y +K      +S+ N+LI+ Y KCG    
Sbjct: 310 SGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDE 369

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + F  V   ++V+WT++I     HG  +E+I +FE+M +  V PD +A+L +LSACSH
Sbjct: 370 AARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSH 429

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV E  RYF+ +  D  + P +EHY C+ DLLGR G L EA DL+A+MP+ P      
Sbjct: 430 SGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQ 489

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             + AC+VH ++ + + A E LL ++   PVNY ++SN++A    W +  R+R  MR   
Sbjct: 490 TLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRG 549

Query: 598 DHKVPGCSWIEIAGEIHTFV-SSDRSHPQAVHMYAMLCTVFGLMEEN 643
             K  GCSW+E+  E H F    D SHP+A  +  +L  V   M E 
Sbjct: 550 LRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTMRER 596



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 221/461 (47%), Gaps = 16/461 (3%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           +LRA   +  I  G +LH  +LK+GFG +  + + L+D+Y KCG +  A  VF  +  R+
Sbjct: 10  MLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERN 69

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           +V W  ++  +  +      + +   MR L  +  + FT S+ + +CG +G    G  IH
Sbjct: 70  VVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIH 129

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           G  ++  F+   +VA SLV +Y+K G I DA RVFDG   +N+V+WN M+ G+   G GR
Sbjct: 130 GACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGR 189

Query: 347 EAVKLLRDMLQ-----GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS- 400
           +++ + R+M Q         PDE T AS+L +CGSL  + E  QVHA  +  GV    + 
Sbjct: 190 DSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNA 249

Query: 401 -IENALINAYSKCGS-IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            +  AL++ Y KC   +  A+Q F  +++ + + WT++I  +A  G  KE++E+F +  S
Sbjct: 250 ILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWS 309

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             VR D      V+   +   LV +G +     +     L D      L D+  + GL  
Sbjct: 310 SGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGL-DVSVANSLIDMYHKCGLTD 368

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACK-VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
           EA      +P            G  K  HG   +  +   +   +EP +    AL+S   
Sbjct: 369 EAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACS 428

Query: 578 AS---ERC--WFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            S   E C  +F   R  + +R   +H       +  AGE+
Sbjct: 429 HSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGEL 469



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 190/405 (46%), Gaps = 14/405 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S +LK     G +  G  +H   ++ G      + N ++ +Y K     D  ++FD    
Sbjct: 110 SASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVF 169

Query: 127 RNIVTWNTLISGIINCGGNVTPYF-------RRMLLDNVRLDHITFNSLLRACVQADDIE 179
           RN+VTWN +ISG  + G              RR   ++ + D  TF SLL+AC       
Sbjct: 170 RNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAR 229

Query: 180 VGRRLHS--FILKVGFGLNCFVSSALVDLYGKCG-FVEDARRVFDEVLCRDLVLWNVMVS 236
            G ++H+   I  V    N  ++ AL+D+Y KC   +  A +VF+ +  ++ + W  ++ 
Sbjct: 230 EGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIV 289

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            +A       A+ +F      G++ D    SS+V         + GRQ+H   +K    L
Sbjct: 290 GHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGL 349

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV VA SL+DMY K G  D+A R F  + A+NVVSW  M+ G G++G G+EA+ +  +M 
Sbjct: 350 DVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMR 409

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGS 414
                PDEV   ++LS+C    +  E R+  + AI++  +     E+   +++   + G 
Sbjct: 410 AEGVEPDEVAYLALLSACSHSGLVEECRRYFS-AIRHDRRLRPRAEHYACMVDLLGRAGE 468

Query: 415 IAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           ++ A     ++   P +  W +++ A   H       E  E +L+
Sbjct: 469 LSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLA 513



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +A +L +  + S      Q+H   +K G  +   + N LI+ Y+KCG +  A + FG + 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGL 485
           E ++V+WT+++  +  HG ++E + +   M S + V P+       L AC   G ++ G+
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126

Query: 486 RYFNLMI----SDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
                 +      +H++ +S     L    GR+G     +D
Sbjct: 127 WIHGACVRAGFEGHHVVANS--LVLLYSKGGRIGDARRVFD 165


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/528 (36%), Positives = 297/528 (56%), Gaps = 19/528 (3%)

Query: 125 RVRNIVTWNTLISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           R  N  +WN  I G +   N    V  Y R +  D  + D+ T+  L +AC +   I +G
Sbjct: 39  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 98

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +   +L +GF  + FVS+A++ L   CG ++ AR++FD+   RDLV WN M++ Y   
Sbjct: 99  SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR 158

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                A+  +  M++EG+K D  T   +V+SC  L    LGR+ H  + +    L V +A
Sbjct: 159 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 218

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAK----------------NVVSWNTMVVGFGQNGDG 345
            +L+DMY K GN++ A ++FD MT K                +VV WN M+ G+     G
Sbjct: 219 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRG 278

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           +EA+ L  +M   +  PDEVT+ S LS+C  L        +H Y  K+ +   +++  AL
Sbjct: 279 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTAL 338

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y+KCG I  A+Q F  +   + +TWT+II   A HG +  +I  F +M+ ++V PD 
Sbjct: 339 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 398

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           + FL +LSAC HGGLV EG +YF+ M S +++ P  +HY+C+ DLLGR GLL EA +L+ 
Sbjct: 399 VTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIK 458

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           SMPIE  +   GA   AC++HG++ + + AA KLL+++P     Y L++N+Y     W +
Sbjct: 459 SMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKE 518

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             + RK+MR     K PGCS IE+ G ++ F+  D+SHPQ+  +Y  L
Sbjct: 519 AGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECL 566



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 223/455 (49%), Gaps = 27/455 (5%)

Query: 17  RPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIH-------ESTHSAHSFYSQA 69
           R L Y T  L+  +     +     R  L S+      +        + T   +  Y   
Sbjct: 26  RDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLL 85

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            K  A+   ++ G ++  H++ LG  + + + N V+H+ V C   D   K+FD+  VR++
Sbjct: 86  FKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDL 145

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+G +  G       ++R M ++ ++ D +T   ++ +C Q +D+++GR  H +
Sbjct: 146 VSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCY 205

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARR----------------VFDEVLCRDLVLW 231
           I + G  L   +++AL+D+Y KCG +E AR+                +FDE+  +D+V W
Sbjct: 206 IEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPW 265

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N M+  Y     G  A+A+FN M+   +  D  T  S +++C  LG+  +G  IH  + K
Sbjct: 266 NAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK 325

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
               L+V + T+L+DMYAK G I  A +VF  +  +N ++W  ++ G   +G+   A+  
Sbjct: 326 HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAY 385

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA-YAIKNGVQAFLSIENALINAYS 410
             +M+  S  PDEVT   +LS+C    +  E R+  +  + K  +   L   + +++   
Sbjct: 386 FSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLG 445

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           + G +  A +   S+  E D V W ++  A   HG
Sbjct: 446 RAGLLEEAEELIKSMPIEADAVVWGALFFACRIHG 480


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 315/562 (56%), Gaps = 8/562 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+V  + G   QG Q+H +++K G    L   N ++ +Y KC+      K+FD M  RN+
Sbjct: 13  LRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNV 72

Query: 130 VTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+W+ L+SG +  G   G+++  F  M    +  +  TF++ L+AC   + +E G ++H 
Sbjct: 73  VSWSALMSGHVLNGDLKGSLS-LFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           F LK+GF +   V ++LVD+Y KCG + +A +VF  ++ R L+ WN M++ +     G  
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSK 191

Query: 247 AIAVFNLMRLEGMK--GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLVAT 302
           A+  F +M+   +K   D FT +SL+ +C + G    G+QIHG +++  F       +  
Sbjct: 192 ALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITG 251

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SLVD+Y K G +  A + FD +  K ++SW+++++G+ Q G+  EA+ L + + + +   
Sbjct: 252 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 311

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   L+SI+      ++  + +Q+ A A+K       S+ N++++ Y KCG +  A +CF
Sbjct: 312 DSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCF 371

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             ++  D+++WT +I  Y  HGL K+S+ +F +ML H + PD + +L VLSACSH G++ 
Sbjct: 372 AEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIK 431

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG   F+ ++  + I P  EHY C+ DLLGR G L EA  L+ +MPI+P        +  
Sbjct: 432 EGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSL 491

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+VHG I L K   + LL ++   P NY ++SN+Y     W +    R++       K  
Sbjct: 492 CRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEA 551

Query: 603 GCSWIEIAGEIHTFVSSDRSHP 624
           G SW+EI  E+H F S + SHP
Sbjct: 552 GMSWVEIEREVHFFRSGEDSHP 573



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 222/427 (51%), Gaps = 24/427 (5%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+LR C +    + G ++H ++LK G GLN   S+ L+D+Y KC     A +VFD +  R
Sbjct: 11  SILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPER 70

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W+ ++S + LN    G++++F+ M  +G+  + FTFS+ + +CG L + + G QIH
Sbjct: 71  NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIH 130

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           G  +K  F++ V V  SLVDMY+K G I++A +VF  +  ++++SWN M+ GF   G G 
Sbjct: 131 GFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGS 190

Query: 347 EAVKLLRDMLQGSFC--PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ--AFLSIE 402
           +A+     M + +    PDE TL S+L +C S  +    +Q+H + +++G    +  +I 
Sbjct: 191 KALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATIT 250

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            +L++ Y KCG +  A + F  +KE  +++W+S+I  YA  G   E++ +F+++     +
Sbjct: 251 GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQ 310

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT---DLLGRVGLLVE 519
            DS A   ++   +   L+ +G +   L +     LP     + L    D+  + GL+ E
Sbjct: 311 IDSFALSSIIGVFADFALLRQGKQMQALAVK----LPSGLETSVLNSVVDMYLKCGLVDE 366

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A    A M ++          G    +G  GL K +     E+         L  N+   
Sbjct: 367 AEKCFAEMQLKDVISWTVVITG----YGKHGLGKKSVRIFYEM---------LRHNIEPD 413

Query: 580 ERCWFDV 586
           E C+  V
Sbjct: 414 EVCYLAV 420



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 206/387 (53%), Gaps = 8/387 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK       L++G Q+H   +K+G    + + N ++ +Y KC   ++ EK+F  + 
Sbjct: 110 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIV 169

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVG 181
            R++++WN +I+G ++   G      F  M   N+  R D  T  SLL+AC     I  G
Sbjct: 170 DRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229

Query: 182 RRLHSFILKVGFGL--NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +++H F+++ GF    +  ++ +LVDLY KCG++  AR+ FD++  + ++ W+ ++  YA
Sbjct: 230 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 289

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                  A+ +F  ++    + D F  SS++         + G+Q+  L +K    L+  
Sbjct: 290 QEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETS 349

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  S+VDMY K G +D+A + F  M  K+V+SW  ++ G+G++G G+++V++  +ML+ +
Sbjct: 350 VLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN 409

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGA 418
             PDEV   ++LS+C    +  E  ++ +  ++ +G++  +     +++   + G +  A
Sbjct: 410 IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEA 469

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHG 444
                ++  +P++  W +++     HG
Sbjct: 470 KHLIDTMPIKPNVGIWQTLLSLCRVHG 496



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%)

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            L SIL  C    +S +  QVH Y +K+G    L   N LI+ Y KC     A + F S+
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            E ++V+W++++  +  +G  K S+ +F +M    + P+   F   L AC     + +GL
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGL 127

Query: 486 R 486
           +
Sbjct: 128 Q 128


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 318/569 (55%), Gaps = 5/569 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G+++H    KLG    + +   ++H+Y +         LFD+M  R++ +WN +I
Sbjct: 229 GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMI 288

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           SG+I  G           M L+ ++++ +T  S+L  C Q  DI     +H +++K G  
Sbjct: 289 SGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLE 348

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FVS+AL+++Y K G +EDAR+ F ++   D+V WN +++ Y  N     A   F  M
Sbjct: 349 FDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM 408

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGN 313
           +L G + D  T  SL +        K  R +HG ++++ + + DV++  ++VDMYAK G 
Sbjct: 409 QLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGL 468

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILS 372
           +D A +VF+ +  K+V+SWNT++ G+ QNG   EA+++ + M +     P++ T  SIL 
Sbjct: 469 LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +   +    +  ++H   IK  +   + +   LI+ Y KCG +  A+  F  V +   VT
Sbjct: 529 AYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +II  +  HG +++++++F +ML   V+PD + F+ +LSACSH G V EG   F LM 
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM- 647

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
            +Y I P  +HY C+ DLLGR G L  AY  +  MP++P +   GA +GAC++HG+I L 
Sbjct: 648 QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELG 707

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           K+A+++L E++      Y L+SN+YA+   W  V ++R + R+    K PG S IE+  +
Sbjct: 708 KFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRK 767

Query: 613 IHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           +  F + ++SHP+   +Y  L  +   M+
Sbjct: 768 VDVFYTGNQSHPKCKEIYEELRVLTAKMK 796



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 160/506 (31%), Positives = 270/506 (53%), Gaps = 27/506 (5%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            K LH+ ++  G    + +  +++++Y            FD++  +++ TWN++IS  ++
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 142 CG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G     +  +++ +L+  +R D  TF  +L+AC    D   GRR+H +  K+GF  N F
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVF 251

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+++L+ +Y + GF   AR +FD++  RD+  WN M+S    N     A+ V + MRLEG
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K ++ T  S++  C  LG       IH  VIK   + D+ V+ +L++MYAK GN++DA 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDAR 371

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           + F  M   +VVSWN+++  + QN D   A      M    F PD +TL S L+S  + S
Sbjct: 372 KAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS-LASIVAQS 430

Query: 379 ISCE-TRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
             C+ +R VH + ++ G +   + I NA+++ Y+K G +  A + F  +   D+++W ++
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTL 490

Query: 437 IGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-SD 494
           I  YA +GL+ E+IEV++ M     + P+   ++ +L A +H G + +G+R    +I ++
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTN 550

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
            H+  D    TCL D+ G+ G LV+A  L   +P E  S T  A I    +HG       
Sbjct: 551 LHL--DVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGH------ 601

Query: 555 AAEKLLEL------EPSKPVNYALVS 574
            AEK L+L      E  KP +   VS
Sbjct: 602 -AEKTLKLFGEMLDEGVKPDHVTFVS 626



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 204/383 (53%), Gaps = 11/383 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V  + G +     +H +++K GL   L + N ++++Y K    +D  K F +M + ++
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+        VT   +F +M L+  + D +T  SL     Q+ D +  R +H F
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 188 ILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           I++ G+ + +  + +A+VD+Y K G ++ A +VF+ +L +D++ WN +++ YA N L   
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASE 502

Query: 247 AIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI V+ +M   + +  +  T+ S++ +   +G+ + G +IHG VIK +  LDV VAT L+
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLI 562

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K G + DA  +F  +  ++ V+WN ++   G +G   + +KL  +ML     PD V
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T  S+LS+C       E +       + G++  L     +++   + G +  A   +G +
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMA---YGFI 679

Query: 426 K----EPDLVTWTSIIGAYAFHG 444
           K    +PD   W +++GA   HG
Sbjct: 680 KDMPLQPDASIWGALLGACRIHG 702


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 338/606 (55%), Gaps = 33/606 (5%)

Query: 61  SAHSFYSQALKVS--AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           S+ +  S AL  S   K   L  GKQ+H    + G     S  N ++ +Y K    DD +
Sbjct: 112 SSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAK 170

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQAD 176
            L      R++VTWN++IS        +    + R M+L+ V+ D +TF S+L AC   D
Sbjct: 171 SLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLD 230

Query: 177 DIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            +  G+ +H++ L+    + N FV SALVD+Y  CG VE  R VFD VL R + LWN M+
Sbjct: 231 LLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMI 290

Query: 236 SCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           + YA +   + A+ +F  M    G+  +  T SS+V +            IHG VIK+  
Sbjct: 291 AGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGL 350

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           + +  +  +L+DMY++ G+I  + R+FD M  +++VSWNT++  +   G   +A+ LL +
Sbjct: 351 ETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHE 410

Query: 355 ML----------------QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           M                 Q  F P+ +TL ++L  C SLS   + +++HAYAI+N + + 
Sbjct: 411 MQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQ 470

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           +++ +AL++ Y+KCG +  A + F  +   +++TW  II AY  HG  KES+E+FE M++
Sbjct: 471 VTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVA 530

Query: 459 HA-----VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
                  V+P  + F+ + ++CSH G+V EGL  F+ M +++ I P  +HY C+ DL+GR
Sbjct: 531 EGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGR 590

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAF---IGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
            G + EAY L+ +MP     D +GA+   +GAC+++ +I + + AAE LL+L+P    +Y
Sbjct: 591 AGKVEEAYGLVNTMP--SGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHY 648

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            L+SN+Y+S   W     LR+ M+     K PGCSWIE   E+H F++ D SHPQ+  ++
Sbjct: 649 VLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLH 708

Query: 631 AMLCTV 636
             L T+
Sbjct: 709 DFLETL 714



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/512 (27%), Positives = 244/512 (47%), Gaps = 38/512 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +   LK  A    L  GKQ+H+H+ K G  +   +++ N ++++Y KC    D  K+FD 
Sbjct: 13  FPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDR 72

Query: 124 MRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV---QADDI 178
           +  R+ V+WN++IS +            FR ML++       T  S+  AC    + D +
Sbjct: 73  ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGL 132

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+++H    + G     F ++AL+ +Y K G ++DA+ +      RDLV WN M+S +
Sbjct: 133 WLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSF 191

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL------VIKQ 292
           + N     A+    LM LEG+K D  TF+S++ +C  L   + G++IH        VI+ 
Sbjct: 192 SQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIEN 251

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           SF     V ++LVDMY   G ++    VFD +  + +  WN M+ G+ Q+    +A+ L 
Sbjct: 252 SF-----VGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLF 306

Query: 353 RDMLQGS-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
            +M   +    +  T++SI+ +            +H Y IK G++    ++NALI+ YS+
Sbjct: 307 IEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSR 366

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-------------- 457
            G I  + + F S+++ D+V+W +II +Y   G S +++ +  +M               
Sbjct: 367 MGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYND 426

Query: 458 --SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
                 +P+SI  + VL  C+    +++G       I +  +       + L D+  + G
Sbjct: 427 EKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCG 485

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            L  A  +   MPI     T    I A  +HG
Sbjct: 486 CLNLARRVFDQMPIR-NVITWNVIIMAYGMHG 516



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 163/306 (53%), Gaps = 7/306 (2%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL--NCFVSSALVDLYGKCGFVEDARR 218
           D+  F ++L+A     ++ +G+++H+ + K G+G   +  + + LV++YGKCG + DA +
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VFD +  RD V WN ++S        + AI  F LM +EG +   FT  S+  +C  L  
Sbjct: 69  VFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRK 128

Query: 279 SK---LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
                LG+QIHG   ++          +L+ MYAK G +DDA  +      +++V+WN+M
Sbjct: 129 RDGLWLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSM 187

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NG 394
           +  F QN    EA+  LR M+     PD VT AS+L +C  L +    +++HAYA++ + 
Sbjct: 188 ISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDD 247

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           V     + +AL++ Y  CG +      F SV +  +  W ++I  YA     ++++ +F 
Sbjct: 248 VIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFI 307

Query: 455 KMLSHA 460
           +M + A
Sbjct: 308 EMEAAA 313



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLVATSLVDMYAKNGNID 315
           G   D F F +++ +   +    LG+QIH  V K  +     V +  +LV+MY K G + 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           DA +VFD +T ++ VSWN+++    +  +   A+K  R ML   F P   TL S+  +C 
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 376 SLSIS---CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +L         +Q+H    + G     S  NAL+  Y+K G +  A       ++ DLVT
Sbjct: 125 NLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           W S+I +++ +    E++     M+   V+PD + F  VL ACSH  L+  G
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF--LSIENALINAYSKC 412
           M+   F PD     ++L +   +      +Q+HA+  K G  +F  ++I+N L+N Y KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G +  A + F  + E D V+W SII A       + +I+ F  ML     P S   + + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 473 SACSH 477
            ACS+
Sbjct: 121 LACSN 125


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/538 (36%), Positives = 315/538 (58%), Gaps = 11/538 (2%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR 159
           N ++  Y K         LFD++   ++V++NTLI+   + G  ++    F  M    + 
Sbjct: 78  NALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLV 137

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  TF+ ++ AC   + + + R+LHS     GF     V ++L+  Y K G +E+A  V
Sbjct: 138 MDGFTFSGVITACC--NHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMV 195

Query: 220 FDEV--LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           F+ +    RD V WN M+  Y  +  G  A+A++  M   G + D FT +S++ +   + 
Sbjct: 196 FNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVE 255

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG-NIDDACRVFDGMTAKNVVSWNTMV 336
               G Q H   IK  F+ +  V + L+DMYAK G  + ++ +VF+ +   ++V WNTM+
Sbjct: 256 DLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMI 315

Query: 337 VGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
            G+ QN +   EA++  R M +  + PD+ +    +S+C +LS   + +Q HA A+K+ +
Sbjct: 316 SGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEI 375

Query: 396 QA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
            +  +S+ NAL+  YSKCG++  A + F  + + + VT  SII  YA HG+  ES+ +FE
Sbjct: 376 PSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFE 435

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +ML+ ++ P SI  + +LSAC+H G V EG +YFN+M   + I P++EHY+C+ DLLGR 
Sbjct: 436 QMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRA 495

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G L EA  L+ +MP  P S    A +GAC+ +G++ LA+ AA + L+LEP+  V Y +++
Sbjct: 496 GKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLA 555

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP--QAVHMY 630
           ++Y++ R W + AR+RK+MRD    K PGCSWIE+   +H FV+ D SHP  + +HMY
Sbjct: 556 SMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMY 613



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 206/421 (48%), Gaps = 42/421 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC------------- 210
           +F  +L++C+   D+  G+ LH+  LK     + ++S+  + LY KC             
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 211 ------------------GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                               +  A  +FD++   DLV +N +++ YA       A+++F 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR  G+  D FTFS ++ +C       L RQ+H L     FD  V V  SL+  Y+KNG
Sbjct: 130 EMREMGLVMDGFTFSGVITAC--CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNG 187

Query: 313 NIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            +++A  VF+GM    ++ VSWN+M+V +GQ+  G +A+ L RDM+   F  D  TLAS+
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-IAGALQCFGSVKEPD 429
           L++   +       Q HA AIK G      + + LI+ Y+KCG+ ++ + + F  +   D
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSD 307

Query: 430 LVTWTSIIGAYAFHG-LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           LV W ++I  Y+ +  LS E++E F +M      PD  +F+  +SACS+    S+G ++ 
Sbjct: 308 LVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFH 367

Query: 489 NLMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
            L +     +P ++      L  +  + G L +A  L   MP +  + TL + I     H
Sbjct: 368 ALAMKSE--IPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQH 424

Query: 547 G 547
           G
Sbjct: 425 G 425


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 196/574 (34%), Positives = 319/574 (55%), Gaps = 10/574 (1%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ G Q HS I+K  L   L + N ++ +Y KC A +D  ++F+ M  R+ VTWNT+I  
Sbjct: 444  LEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGS 503

Query: 139  IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             +        +  F+RM L  +  D     S L+AC     +  G+++H   +K G   +
Sbjct: 504  YVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRD 563

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
                S+L+D+Y KCG ++DAR+VF  +    +V  N +++ Y+ N L + A+ +F  M  
Sbjct: 564  LHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEE-AVVLFQEMLT 622

Query: 257  EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLVATSLVDMYAKNGNID 315
             G+     TF+++V +C    S  LG Q HG + K+ F  +   +  SL+ MY  +  + 
Sbjct: 623  RGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMT 682

Query: 316  DACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            +AC +F  +++ K++V W  M+ G  QNG   EA+K  ++M      PD+ T  ++L  C
Sbjct: 683  EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 742

Query: 375  GSLSISCETRQVHA--YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLV 431
              LS   E R +H+  + + + +    S  N LI+ Y+KCG + G+ Q F  ++   ++V
Sbjct: 743  SVLSSLREGRAIHSLIFHLAHDLDELTS--NTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800

Query: 432  TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            +W S+I  YA +G +++++++F+ M    + PD I FL VL+ACSH G VS+G + F +M
Sbjct: 801  SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 492  ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
            I  Y I    +H  C+ DLLGR G L EA D + +  ++P +    + +GAC++HG    
Sbjct: 861  IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIR 920

Query: 552  AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
             + +AEKL+ELEP     Y L+SN+YAS+ CW     LRK+MRD    KVPG SWI++  
Sbjct: 921  GEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQ 980

Query: 612  EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
              H F + D+SH +   +   L  ++ LM+++ V
Sbjct: 981  RTHIFAAGDKSHSEIGKIEMFLEDLYDLMKDDAV 1014



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 231/466 (49%), Gaps = 14/466 (3%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S  S  S     L        L  G  +H+  +KLGL + + + + ++ +Y KC+  +  
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAA 381

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            K+F+ +  +N V WN +I G  + G +  V   F  M      +D  TF SLL  C  +
Sbjct: 382 AKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAAS 441

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D+E+G + HS I+K     N FV +ALVD+Y KCG +EDAR++F+ +  RD V WN ++
Sbjct: 442 HDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII 501

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
             Y  +     A  +F  M L G+  D    +S + +C  +     G+Q+H L +K   D
Sbjct: 502 GSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD 561

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D+   +SL+DMY+K G I DA +VF  +   +VVS N ++ G+ QN +  EAV L ++M
Sbjct: 562 RDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA---FLSIENALINAYSKC 412
           L     P E+T A+I+ +C          Q H    K G  +   +L I  +L+  Y   
Sbjct: 621 LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGI--SLLGMYMNS 678

Query: 413 GSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
             +  A   F  +  P  +V WT ++  ++ +G  +E+++ +++M    V PD   F+ V
Sbjct: 679 RGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTV 738

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVG 515
           L  CS    + EG    +L+   +H+  D +  T   L D+  + G
Sbjct: 739 LRVCSVLSSLREGRAIHSLI---FHLAHDLDELTSNTLIDMYAKCG 781



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 204/374 (54%), Gaps = 3/374 (0%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLD 161
           V++ Y++     D   LF EM   ++V WN +ISG     C      YF  M   +V+  
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             T  S+L A     ++++G  +H+  +K+G   N +V S+LV +Y KC  +E A +VF+
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  ++ V WN M+  YA N      + +F  M+  G   D FTF+SL+++C      ++
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G Q H ++IK+    ++ V  +LVDMYAK G ++DA ++F+ M  ++ V+WNT++  + Q
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQ 506

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           + +  EA  L + M       D   LAS L +C  +    + +QVH  ++K G+   L  
Sbjct: 507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHT 566

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            ++LI+ YSKCG I  A + F S+ E  +V+  ++I  Y+ + L +E++ +F++ML+  V
Sbjct: 567 GSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGV 625

Query: 462 RPDSIAFLEVLSAC 475
            P  I F  ++ AC
Sbjct: 626 NPSEITFATIVEAC 639



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 222/451 (49%), Gaps = 39/451 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +HS  + LG+ ++  L N ++ +Y KC      EK FD +  +++  WN+++S 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSM 134

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G  G V   F  +  + +  +  TF+ +L  C +  ++E GR++H  ++K+G   N
Sbjct: 135 YSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERN 194

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +   ALVD+Y KC  + DARRVF+ ++  + V W  + S Y    L + A+ VF  MR 
Sbjct: 195 SYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRD 254

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG + D+  F +++N+                                   Y + G + D
Sbjct: 255 EGHRPDHLAFVTVINT-----------------------------------YIRLGKLKD 279

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F  M++ +VV+WN M+ G G+ G    A++   +M + S      TL S+LS+ G 
Sbjct: 280 ARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           ++       VHA AIK G+ + + + ++L++ YSKC  +  A + F +++E + V W ++
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAM 399

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA +G S + +E+F  M S     D   F  +LS C+    +  G ++ +++I    
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK-K 458

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           +  +      L D+  + G L +A  +   M
Sbjct: 459 LAKNLFVGNALVDMYAKCGALEDARQIFERM 489



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 216/465 (46%), Gaps = 38/465 (8%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A+   ++ G+Q+H  ++K+GL         ++ +Y KC    D  ++F+ + 
Sbjct: 163 FSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIV 222

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V W  L SG +  G        F RM  +  R DH+ F +                
Sbjct: 223 DPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVT---------------- 266

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
                              +++ Y + G ++DAR +F E+   D+V WNVM+S +     
Sbjct: 267 -------------------VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGC 307

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI  F  MR   +K    T  S++++ G + +  LG  +H   IK     ++ V +S
Sbjct: 308 ETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSS 367

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LV MY+K   ++ A +VF+ +  KN V WN M+ G+  NG+  + ++L  DM    +  D
Sbjct: 368 LVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNID 427

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           + T  S+LS+C +        Q H+  IK  +   L + NAL++ Y+KCG++  A Q F 
Sbjct: 428 DFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFE 487

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + D VTW +IIG+Y       E+ ++F++M    +  D       L AC+H   + +
Sbjct: 488 RMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQ 547

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           G +   L +    +  D    + L D+  + G++ +A  + +S+P
Sbjct: 548 GKQVHCLSVK-CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 142/301 (47%), Gaps = 17/301 (5%)

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           ++G+ +H   +    D +  +  ++VD+YAK   +  A + FD +  K+V +WN+M+  +
Sbjct: 77  RIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMY 135

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
              G   + ++    + +    P++ T + +LS+C   +     RQ+H   IK G++   
Sbjct: 136 SSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNS 195

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
               AL++ Y+KC  I+ A + F  + +P+ V WT +   Y   GL +E++ VFE+M   
Sbjct: 196 YCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDE 255

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG---L 516
             RPD +AF+ V++     G + +    F  M S     PD   +  +    G+ G   +
Sbjct: 256 GHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSS-----PDVVAWNVMISGHGKRGCETV 310

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
            +E +  +    ++    TLG+ + A  +  ++ L      + ++L         L SN+
Sbjct: 311 AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL--------GLASNI 362

Query: 577 Y 577
           Y
Sbjct: 363 Y 363


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 324/581 (55%), Gaps = 19/581 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD--EMRVRNIVTWNTLI 136
           L +GK+LH+H++K            ++++Y KC   D   ++F+      +N+  +N LI
Sbjct: 45  LSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALI 104

Query: 137 SGIINCGGNVTPYFRRMLLDNVR-----LDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           +G +    N  P     L + +R      D  TF  ++RAC   DD  V  ++H  + KV
Sbjct: 105 AGFL---ANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKV 161

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G  L+ FV SALV+ Y K  FV +A RVF+E+  RD+VLWN MV+ +A     + A+ VF
Sbjct: 162 GLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVF 221

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G+    +T + +++    +G    GR +HG V K  ++  V+V+ +L+DMY K 
Sbjct: 222 RRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKC 281

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASI 370
             + DA  VF+ M   ++ SWN+++    + GD    ++L   M+  S   PD VT+ ++
Sbjct: 282 KCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTV 341

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLS--------IENALINAYSKCGSIAGALQCF 422
           L +C  L+     R++H Y + NG+    S        + NAL++ Y+KCG++  A   F
Sbjct: 342 LPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVF 401

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            +++E D+ +W  +I  Y  HG   E++++F +M    + P+ I+F+ +LSACSH G+V 
Sbjct: 402 VNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVK 461

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGL + + M S Y + P  EHYTC+ D+L R G L+EAYDL+ +MP +       + + A
Sbjct: 462 EGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAA 521

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H    LA+ AA K++ELEP    NY L+SNVY     + +V   R  M+     K P
Sbjct: 522 CRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRP 581

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           GCSWIE+   +H F++ DR+HPQ  ++YA L ++  +++E+
Sbjct: 582 GCSWIELVNGVHVFITGDRTHPQTEYIYAGLNSLTAVLQEH 622



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 180/348 (51%), Gaps = 5/348 (1%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-- 224
           + L++C    ++  G+ LH+ +LK  F  +    ++L+++Y KC  ++ + RVF+     
Sbjct: 34  ATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHH 93

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +++  +N +++ +  N L   A+A++N MR  G+  D FTF  ++ +CG      +  +
Sbjct: 94  NKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTK 153

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHGL+ K   +LDV V ++LV+ Y K   + +A RVF+ +  ++VV WN MV GF Q G 
Sbjct: 154 IHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGR 213

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA+ + R M      P   T+  +LS    +      R VH +  K G ++ + + NA
Sbjct: 214 FEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNA 273

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRP 463
           LI+ Y KC  +  AL  F  + E D+ +W SI+  +   G    ++ +F++M+ S  V+P
Sbjct: 274 LIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQP 333

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           D +    VL AC+H   +  G      M+ +   L   E +    D+L
Sbjct: 334 DLVTVTTVLPACTHLAALMHGREIHGYMVVNG--LAKEESHDVFDDVL 379



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 137/280 (48%), Gaps = 13/280 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + +  G    G+ +H  + K+G  + + + N ++ +Y KCK   D   +F+ M   +I
Sbjct: 240 LSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDI 299

Query: 130 VTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            +WN+++S    CG   G +  + R M    V+ D +T  ++L AC     +  GR +H 
Sbjct: 300 FSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHG 359

Query: 187 FILKVGFGL--------NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           +++  G           +  +++AL+D+Y KCG + DAR VF  +  +D+  WN+M++ Y
Sbjct: 360 YMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGY 419

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLD 297
            ++  G  A+ +F+ M    M  +  +F  L+++C   G  K G   +  +  K      
Sbjct: 420 GMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPS 479

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           +   T ++DM  + G + +A  +   M  K + V W +++
Sbjct: 480 IEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLL 519



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T  + + SC    +   G+++H  ++K +F    L  TSL++MY+K   ID + RVF
Sbjct: 28  DLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVF 87

Query: 322 DGMT--AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +  T   KNV ++N ++ GF  N   + A+ L   M      PD+ T   ++ +CG    
Sbjct: 88  NFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDD 147

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                ++H    K G++  + + +AL+N Y K   +  A + F  +   D+V W +++  
Sbjct: 148 GFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNG 207

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +A  G  +E++ VF +M  + V P       VLS  S
Sbjct: 208 FAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFS 244


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 303/547 (55%), Gaps = 5/547 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  ++     +G+++H  I+K G  +       V  +Y KC   +    +FDE  
Sbjct: 106 FSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTGLV-DMYAKCGEIECSRSVFDENL 164

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+ +W+++I+G +  N   +    F RM  + +  + IT   L+ AC +   +  G+ 
Sbjct: 165 DRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKW 224

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH +++K G  L  ++ +AL+DLY KCG V DAR VFDE+   D+V W  M+  Y  N  
Sbjct: 225 LHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGC 284

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F       +  +  T +S+ +SC  L +  LGR IHGL IK     D +V  S
Sbjct: 285 PEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-SRDPIVTNS 343

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVD YAK     DA  VF+ ++ ++VV+WN+++  F QNG   EA++L   M  GS  PD
Sbjct: 344 LVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPD 403

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGV-QAFLSIENALINAYSKCGSIAGALQCF 422
            VTL S+LS+C SL+        HAYA+K G+  + + +  AL+  Y+KCG    A   F
Sbjct: 404 AVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIF 463

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + +   VTW+++I  Y   G  + S+ +F  ML   ++P+   F  +LSACSH G++ 
Sbjct: 464 DGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIG 523

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG R F ++  DY+++P ++HYTC+ DLL R G L EA D +  MP++P     GAF+  
Sbjct: 524 EGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHG 583

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C +H    L + A +++LEL P     Y L+ N+YAS+  W  V ++R++M+     K P
Sbjct: 584 CGLHSRFDLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTP 643

Query: 603 GCSWIEI 609
           GCS +E+
Sbjct: 644 GCSLMEM 650



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 229/395 (57%), Gaps = 4/395 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG-IINC 142
           ++H++++  GL   LS   +++ +Y      D    +FD +   + ++W  +I    +N 
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 143 G-GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
              ++  ++ RM +     D++ F+ +L+AC ++ + + GR++H  I+K G   + FV +
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFT 141

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            LVD+Y KCG +E +R VFDE L R++  W+ M++ Y  N L    + +FN MR E ++ 
Sbjct: 142 GLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEA 201

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           +  T   LV++C  LG+   G+ +HG +IK   +L   + T+L+D+YAK G + DA  VF
Sbjct: 202 NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVF 261

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D +   ++VSW  M+VG+ QNG   EA+KL     Q +  P++VT+AS+ SSC  L    
Sbjct: 262 DELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLN 321

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             R +H  +IK G +  + + N+L++ Y+KC     A   F ++ + D+V W SII A++
Sbjct: 322 LGRSIHGLSIKLGSRDPI-VTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFS 380

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            +G + E++E+F +M   +V PD++  + VLSAC+
Sbjct: 381 QNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACA 415



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 160/302 (52%), Gaps = 1/302 (0%)

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
           D+I     +H++++  G   +   S+ LV LYG  G ++ AR VFD +   D + W V++
Sbjct: 16  DNINTLMEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVII 75

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
             Y LN      +  +N MR+   + D   FS ++ +C    +   GR++H  ++K   +
Sbjct: 76  RWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-N 134

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  V T LVDMYAK G I+ +  VFD    +NV SW++M+ G+ QN   ++ + L   M
Sbjct: 135 PDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM 194

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            +     +++TL  ++ +C  L    + + +H Y IK G++    +  AL++ Y+KCG +
Sbjct: 195 REELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVV 254

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F  +   D+V+WT++I  Y  +G  +E++++F +    AV P+ +    V S+C
Sbjct: 255 RDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSC 314

Query: 476 SH 477
           S 
Sbjct: 315 SQ 316



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 36/204 (17%)

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           ++HAY +  G+   LS    L++ Y   G +  A   F ++  PD ++W  II  Y  + 
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
             ++ +  + +M       D++ F  VL ACS      EG R  +  I  +   PDS  +
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEG-RKVHCQIVKFGN-PDSFVF 140

Query: 505 TCLTDLLGRVGLL----------------------------------VEAYDLLASMPIE 530
           T L D+  + G +                                  +  ++ +    IE
Sbjct: 141 TGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIE 200

Query: 531 PRSDTLGAFIGACKVHGSIGLAKW 554
               TLG  + ACK  G++   KW
Sbjct: 201 ANQITLGILVHACKKLGALHQGKW 224


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 305/522 (58%), Gaps = 7/522 (1%)

Query: 135 LISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +I+G  +C  +   +  F  M+ + +  +  T +S+L+AC     +  GR +H   +K G
Sbjct: 64  MIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG 123

Query: 193 FGLNCFVSSALVDLYGKCGF-VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
                +V +AL+D+Y  C   ++DA  VF  +  ++ V W  +++ Y     G G + VF
Sbjct: 124 LDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVF 183

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M LE ++ + F+FS  V +C ++GS   G Q+H  V K  F+ ++ V  S++DMY + 
Sbjct: 184 RQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRC 243

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
               +A R F  M  +++++WNT++ G+ +  +  E++ +   M    F P+  T  SI+
Sbjct: 244 SCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIM 302

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           ++C +L+     +Q+H   I+ G+   L++ NALI+ YSKCG+IA + Q FG +   DLV
Sbjct: 303 AACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLV 362

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +WT+++  Y  HG  +E++E+F+KM+   +RPD + F+ +LSACSH GLV EGLRYF LM
Sbjct: 363 SWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLM 422

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           + DY+I PD E Y C+ DLLGR G + EAY+L+ SMP +P     G F+GACK H    L
Sbjct: 423 VGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNL 482

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
            K AA ++L+L P     Y ++SN+YA++  W + ARLRK+M+   + K  G SW+E+  
Sbjct: 483 GKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGN 542

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLD 653
            +++FV  D    +   +Y +L  + G M+E   SG+   LD
Sbjct: 543 HVYSFVVGDEVGSKIEGIYQVLENLIGHMKE---SGYVPDLD 581



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 206/382 (53%), Gaps = 6/382 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-KAFDDMEKLFDEMR 125
           S  LK       L  G+ +H   +K GL   + + N ++ +Y  C  + DD   +F  + 
Sbjct: 97  SSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIH 156

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++N V+W TLI+G    + G      FR+MLL+ V L+  +F+  +RAC        G +
Sbjct: 157 LKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQ 216

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH+ + K GF  N  V ++++D+Y +C    +A R F E+  RDL+ WN +++ Y  +  
Sbjct: 217 LHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNP 276

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + ++ VF++M  EG   + FTF+S++ +C TL     G+QIHG +I++  D ++ ++ +
Sbjct: 277 TE-SLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNA 335

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K GNI D+ +VF GM+ +++VSW  M++G+G +G G EAV+L   M++    PD
Sbjct: 336 LIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 395

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCF 422
            V   +ILS+C    +  E  +     + +  +     I   +++   + G +  A +  
Sbjct: 396 RVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELI 455

Query: 423 GSVK-EPDLVTWTSIIGAYAFH 443
            S+  +PD   W   +GA   H
Sbjct: 456 ESMPFKPDECVWGPFLGACKAH 477



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 137/264 (51%), Gaps = 2/264 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A++     G    G+QLH+ + K G  + L + N +L +Y +C  F +  + F EM 
Sbjct: 198 FSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN 257

Query: 126 VRNIVTWNTLISGIINCGGNVTPY-FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            R+++TWNTLI+G        + Y F  M  +    +  TF S++ AC     +  G+++
Sbjct: 258 QRDLITWNTLIAGYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQI 317

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I++ G   N  +S+AL+D+Y KCG + D+ +VF  +  RDLV W  M+  Y  +  G
Sbjct: 318 HGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYG 377

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATS 303
           + A+ +F+ M   G++ D   F +++++C   G    G +   L++   +   D  +   
Sbjct: 378 EEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGC 437

Query: 304 LVDMYAKNGNIDDACRVFDGMTAK 327
           +VD+  + G +++A  + + M  K
Sbjct: 438 VVDLLGRAGKVEEAYELIESMPFK 461



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           L+++ S  L     T     +   G    A  +      K ++    M+ G+    +   
Sbjct: 17  LIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKGLIGEALMIAGYTSCNNHTH 76

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A  +  +M+     P+  T++S+L +C  +      R VH  AIK+G+  F+ ++NAL++
Sbjct: 77  AWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMD 136

Query: 408 AYSKCG-SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            Y+ C  S+  A   F  +   + V+WT++I  Y         + VF +ML   V  +  
Sbjct: 137 MYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPF 196

Query: 467 AFLEVLSACSHGG 479
           +F   + AC+  G
Sbjct: 197 SFSIAVRACTSIG 209


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 325/603 (53%), Gaps = 13/603 (2%)

Query: 70   LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            + V A       G  +HS  ++  L + +++ N ++++Y       D E LF  M  R++
Sbjct: 555  MSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 614

Query: 130  VTWNTLISGII-NCGG-NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            ++WNT+IS  + NC   +      ++   N   +H+TF+S L AC     +  G+ +H+ 
Sbjct: 615  ISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAI 674

Query: 188  ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +L++    N  V ++L+ +YGKC  +EDA +VF  +   D+V +NV++  YA+   G  A
Sbjct: 675  VLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKA 734

Query: 248  IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK----LGRQIHGLVIKQSFDLDVLVATS 303
            + VF+ MR  G+K +Y T   ++N  G+  SS      GR +H  +I+  F  D  VA S
Sbjct: 735  MQVFSWMRSAGIKPNYIT---MINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANS 791

Query: 304  LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            L+ MYAK GN++ +  +F+ +T KN+VSWN ++    Q G G EA+KL  DM       D
Sbjct: 792  LITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLD 851

Query: 364  EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             V LA  LSSC SL+   E  Q+H   +K+G+ +   + NA ++ Y KCG +   LQ   
Sbjct: 852  RVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVP 911

Query: 424  SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
                     W ++I  YA +G  KE+ E F++M++   +PD + F+ +LSACSH GLV +
Sbjct: 912  DQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDK 971

Query: 484  GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
            G+ Y+N M S + + P  +H  C+ DLLGR+G   EA   +  MP+ P      + + + 
Sbjct: 972  GIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSS 1031

Query: 544  KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            + H ++ + +  A+KLLEL+P     Y L+SN+YA+   W DV +LR  M+    +K P 
Sbjct: 1032 RTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPA 1091

Query: 604  CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE----NNVSGHCNVLDKEMDEC 659
            CSW+++  E+ TF   DR H  A  +YA L  +   + E     + S   +  D+E  E 
Sbjct: 1092 CSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADTSSALHDTDEEQKEQ 1151

Query: 660  TLW 662
             LW
Sbjct: 1152 NLW 1154



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 206/403 (51%), Gaps = 7/403 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+   + GL   + +   +LH+Y       D ++LF EM  RN+V+W  L+  + +
Sbjct: 365 GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSS 424

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        +R+M  D V  +   F +++  C   ++   G ++ S ++  G      V
Sbjct: 425 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSV 484

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++L+ ++G  G V DA ++FD +   D + WN M+S Y+   +      VF+ MR  G+
Sbjct: 485 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 544

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  SL++ C +      G  IH L ++ S D  V V  +LV+MY+  G + DA  
Sbjct: 545 RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 604

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F  M+ ++++SWNTM+  + QN +  +A+K L  +   +  P+ +T +S L +C S   
Sbjct: 605 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 664

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + + VHA  ++  +Q  L + N+LI  Y KC S+  A + F S+   D+V++  +IG 
Sbjct: 665 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGG 724

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
           YA      ++++VF  M S  ++P+ I  + +     HG   S
Sbjct: 725 YAVLEDGTKAMQVFSWMRSAGIKPNYITMINI-----HGSFAS 762



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 184/370 (49%), Gaps = 5/370 (1%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA-- 175
           LFDEM  R   TW T +SG + CG  G      R M    V L      SL+ AC +   
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 176 -DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
            + I  G  +H+   + G   N ++ +AL+ LYG  G V DA+R+F E+  R++V W  +
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +   + N   + A+  +  MR +G+  +   F+++V+ CG+L +   G Q+   VI    
Sbjct: 419 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 478

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
              V VA SL+ M+   G + DA ++FD M   + +SWN M+  +   G   +   +  D
Sbjct: 479 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 538

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M      PD  TL S++S C S         +H+  +++ + + +++ NAL+N YS  G 
Sbjct: 539 MRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGK 598

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           ++ A   F ++   DL++W ++I +Y  +  S ++++   ++      P+ + F   L A
Sbjct: 599 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 658

Query: 475 CSHGGLVSEG 484
           CS  G + +G
Sbjct: 659 CSSPGALIDG 668



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 174/322 (54%), Gaps = 3/322 (0%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H +    H  +S AL   +  G L  GK +H+ +++L L   L + N ++ +Y KC + +
Sbjct: 642 HTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSME 701

Query: 116 DMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D EK+F  M   +IV++N LI G  ++  G      F  M    ++ ++IT  ++  +  
Sbjct: 702 DAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFA 761

Query: 174 QADDIE-VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            ++D+   GR LH++I++ GF  + +V+++L+ +Y KCG +E +  +F+ +  +++V WN
Sbjct: 762 SSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWN 821

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++       G+ A+ +F  M+  G K D    +  ++SC +L S + G Q+HGL +K 
Sbjct: 822 AIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS 881

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             D D  V  + +DMY K G +D+  +V      +    WNT++ G+ + G  +EA +  
Sbjct: 882 GLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETF 941

Query: 353 RDMLQGSFCPDEVTLASILSSC 374
           + M+     PD VT  ++LS+C
Sbjct: 942 KQMVATGRKPDYVTFVALLSAC 963



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQA-- 175
           LFDEM  R   TW T +SG + CG + T +   R M    V L      SL+ AC +   
Sbjct: 76  LFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGR 135

Query: 176 -DDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
            + I  G  +H+   + G   N ++  AL+ L
Sbjct: 136 DEGIACGAAIHALTHRAGLMGNVYIGRALLHL 167


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 186/571 (32%), Positives = 322/571 (56%), Gaps = 4/571 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           ++ L+  +K G   QG Q+H+  + +G    L + N ++ +Y KC   D    +FD M  
Sbjct: 8   AKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLE 67

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W  L+ G +  G           M    V+ +  TF++ L+AC     +E G ++
Sbjct: 68  RNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQI 127

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H   +K GF     V +A +D+Y KCG +  A +VF+++  R+LV WN M++ +     G
Sbjct: 128 HGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNG 187

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV--LVAT 302
             ++ +F  M+ +G   D FTF+S + +CG LG+ + G QIH  +I + F + +  ++A+
Sbjct: 188 RKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIAS 247

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           ++VD+YAK G + +A +VFD +  KN++SW+ ++ GF Q G+  EA+ L R + +     
Sbjct: 248 AIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNV 307

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D   L+ ++     L++  + +Q+H Y +K      +S+ N++I+ Y KCG    A + F
Sbjct: 308 DGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLF 367

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             ++  ++V+WT +I  Y  HGL +++I +F +M    +  D +A+L +LSACSH GL+ 
Sbjct: 368 SEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIR 427

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           E   YF+ + +++ + P+ EHY C+ D+LGR G L EA +L+ +M ++P        + A
Sbjct: 428 ESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSA 487

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+VHG++ + +   E L  ++   PVNY ++SN+YA    W +  R+RK+++     K  
Sbjct: 488 CRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEA 547

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G SW+EI  EIH F   D +HP    ++ ML
Sbjct: 548 GQSWVEINKEIHFFYGGDDTHPLTEKIHEML 578



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           LA +L +C    +  +  QVHA A+  G    L + N LI+ Y KC  +  A   F  + 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E ++V+WT+++  Y   G +K S+ +  +M    V+P+   F   L AC   G+V  G++
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 310/561 (55%), Gaps = 4/561 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G+++H  ++KLG    + +    +H Y +         LFD M +R+I TWN +I
Sbjct: 153 GNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMI 212

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           SG    G        F  M   +V +D +T +SLL  CVQ DDI  G  +H + +K+G  
Sbjct: 213 SGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLE 272

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FV +AL+++Y K G +  A  +F+++  RD+V WN +++ +  N     A+ V+N M
Sbjct: 273 FDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKM 332

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGN 313
              G+  D  T  SL +    LG+    R IHG V ++ + L D+ +  +++DMYAK G 
Sbjct: 333 HSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGF 392

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLASILS 372
           ID A +VF+G+  K+V+SWN+++ G+ QNG   EA+ +   M   S   P++ T  SIL+
Sbjct: 393 IDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILT 452

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +   L    +  + H   IKN +   + +   L++ Y KCG +A AL  F  V     V+
Sbjct: 453 AHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS 512

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +II  +  HG   +++++F++M S  V+PD I F+ +LSACSH GLV EG   F LM 
Sbjct: 513 WNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQ 572

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             Y I P  +HY C+ DL GR G L +A++ + +MP+ P     GA +GAC++H ++ L 
Sbjct: 573 ETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELV 632

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           +  ++ LL++E      Y L+SN+YA    W  V  +R + RD    K PG S IE+  +
Sbjct: 633 RTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKK 692

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
           I  F + +++HP+   +Y+ L
Sbjct: 693 IDVFYTGNQTHPKCEEIYSEL 713



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 253/498 (50%), Gaps = 11/498 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            KQLH+ ++  G    + L  ++++ Y            FD+++ +++ TWN++IS    
Sbjct: 59  AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYAR 118

Query: 142 CG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G     V  +   +    ++ DH TF  ++RAC   DD   GR++H  +LK+GF  + +
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVY 175

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           ++++ +  Y + GFV  A  +FD ++ RD+  WN M+S + LN     A+ VF+ MR + 
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D  T SSL+  C  L     G  IH   IK   + D+ V  +L++MYAK G +  A 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+ M  +++VSWN+++  F QN     A+ +   M      PD +TL S+ S    L 
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355

Query: 379 ISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
               +R +H +  +       +++ NA+I+ Y+K G I  A + F  +   D+++W S+I
Sbjct: 356 NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLI 415

Query: 438 GAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
             Y+ +GL+ E+I+V+  M  ++   P+   ++ +L+A S  G + +G++    +I ++ 
Sbjct: 416 TGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF- 474

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           +  D    TCL D+ G+ G L +A  L   +P    S +  A I    +HG  GL     
Sbjct: 475 LYFDIFVSTCLVDMYGKCGKLADALSLFYEVP-HQSSVSWNAIISCHGLHG-YGLKAVKL 532

Query: 557 EKLLELEPSKPVNYALVS 574
            K ++ E  KP +   VS
Sbjct: 533 FKEMQSEGVKPDHITFVS 550



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 187/369 (50%), Gaps = 7/369 (1%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           I FN +   C +   + + ++LH+ ++  G   + F+S+ L++ Y   G +  AR  FD+
Sbjct: 44  IDFNRIFLYCTK---VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQ 100

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           +  +D+  WN M+S YA       A+  FN  +    ++ D++TF  ++ +CG L     
Sbjct: 101 IQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD--- 157

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           GR++H LV+K  F+ DV +A S +  Y++ G +  AC +FD M  +++ +WN M+ GF  
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG   EA+++  +M   S   D VT++S+L  C  L        +H YAIK G++  L +
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            NALIN Y+K G +  A   F  +K  D+V+W S++ A+  +     ++ V+ KM S  V
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD +  + + S  +  G           +      L D      + D+  ++G +  A 
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397

Query: 522 DLLASMPIE 530
            +   +P++
Sbjct: 398 KVFEGLPVK 406



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 210/405 (51%), Gaps = 10/405 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L +  +   +  G  +H + +KLGL   L + N ++++Y K       E +F++M+V
Sbjct: 244 SSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKV 303

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+IV+WN+L++        V     + +M    V  D +T  SL     +  +    R +
Sbjct: 304 RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSI 363

Query: 185 HSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           H F+ +  + L +  + +A++D+Y K GF++ AR+VF+ +  +D++ WN +++ Y+ N L
Sbjct: 364 HGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGL 423

Query: 244 GDGAIAVFNLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            + AI V++ MR   G   +  T+ S++ +   LG+ K G + HG +IK     D+ V+T
Sbjct: 424 ANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVST 483

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LVDMY K G + DA  +F  +  ++ VSWN ++   G +G G +AVKL ++M      P
Sbjct: 484 CLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKP 543

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQC 421
           D +T  S+LS+C    +  E +       +  G++  L     +++ + + G +  A   
Sbjct: 544 DHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNF 603

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
             ++   PD+  W +++GA   H    E++E+   +  H ++ +S
Sbjct: 604 VKNMPVRPDVSVWGALLGACRIH----ENVELVRTVSDHLLKVES 644


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 325/603 (53%), Gaps = 13/603 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           + V A       G  +HS  ++  L + +++ N ++++Y       D E LF  M  R++
Sbjct: 253 MSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 312

Query: 130 VTWNTLISGII-NCGG-NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WNT+IS  + NC   +      ++   N   +H+TF+S L AC     +  G+ +H+ 
Sbjct: 313 ISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAI 372

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           +L++    N  V ++L+ +YGKC  +EDA +VF  +   D+V +NV++  YA+   G  A
Sbjct: 373 VLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKA 432

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK----LGRQIHGLVIKQSFDLDVLVATS 303
           + VF+ MR  G+K +Y T   ++N  G+  SS      GR +H  +I+  F  D  VA S
Sbjct: 433 MQVFSWMRSAGIKPNYIT---MINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANS 489

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK GN++ +  +F+ +T KN+VSWN ++    Q G G EA+KL  DM       D
Sbjct: 490 LITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLD 549

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V LA  LSSC SL+   E  Q+H   +K+G+ +   + NA ++ Y KCG +   LQ   
Sbjct: 550 RVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVP 609

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
                    W ++I  YA +G  KE+ E F++M++   +PD + F+ +LSACSH GLV +
Sbjct: 610 DQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDK 669

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ Y+N M S + + P  +H  C+ DLLGR+G   EA   +  MP+ P      + + + 
Sbjct: 670 GIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSS 729

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           + H ++ + +  A+KLLEL+P     Y L+SN+YA+   W DV +LR  M+    +K P 
Sbjct: 730 RTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPA 789

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE----NNVSGHCNVLDKEMDEC 659
           CSW+++  E+ TF   DR H  A  +YA L  +   + E     + S   +  D+E  E 
Sbjct: 790 CSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADTSSALHDTDEEQKEQ 849

Query: 660 TLW 662
            LW
Sbjct: 850 NLW 852



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 206/403 (51%), Gaps = 7/403 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+   + GL   + +   +LH+Y       D ++LF EM  RN+V+W  L+  + +
Sbjct: 63  GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSS 122

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        +R+M  D V  +   F +++  C   ++   G ++ S ++  G      V
Sbjct: 123 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSV 182

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++L+ ++G  G V DA ++FD +   D + WN M+S Y+   +      VF+ MR  G+
Sbjct: 183 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 242

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  SL++ C +      G  IH L ++ S D  V V  +LV+MY+  G + DA  
Sbjct: 243 RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 302

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F  M+ ++++SWNTM+  + QN +  +A+K L  +   +  P+ +T +S L +C S   
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 362

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + + VHA  ++  +Q  L + N+LI  Y KC S+  A + F S+   D+V++  +IG 
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGG 422

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
           YA      ++++VF  M S  ++P+ I  + +     HG   S
Sbjct: 423 YAVLEDGTKAMQVFSWMRSAGIKPNYITMINI-----HGSFAS 460



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 182/366 (49%), Gaps = 5/366 (1%)

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQA---DDI 178
           M  R   TW T +SG + CG + T +   R M    V L      SL+ AC +    + I
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             G  +H+   + G   N ++ +AL+ LYG  G V DA+R+F E+  R++V W  ++   
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVAL 120

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           + N   + A+  +  MR +G+  +   F+++V+ CG+L +   G Q+   VI       V
Sbjct: 121 SSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQV 180

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            VA SL+ M+   G + DA ++FD M   + +SWN M+  +   G   +   +  DM   
Sbjct: 181 SVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD  TL S++S C S         +H+  +++ + + +++ NAL+N YS  G ++ A
Sbjct: 241 GLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F ++   DL++W ++I +Y  +  S ++++   ++      P+ + F   L ACS  
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSP 360

Query: 479 GLVSEG 484
           G + +G
Sbjct: 361 GALIDG 366



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 174/322 (54%), Gaps = 3/322 (0%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H +    H  +S AL   +  G L  GK +H+ +++L L   L + N ++ +Y KC + +
Sbjct: 340 HTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSME 399

Query: 116 DMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D EK+F  M   +IV++N LI G  ++  G      F  M    ++ ++IT  ++  +  
Sbjct: 400 DAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFA 459

Query: 174 QADDI-EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            ++D+   GR LH++I++ GF  + +V+++L+ +Y KCG +E +  +F+ +  +++V WN
Sbjct: 460 SSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWN 519

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++       G+ A+ +F  M+  G K D    +  ++SC +L S + G Q+HGL +K 
Sbjct: 520 AIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS 579

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             D D  V  + +DMY K G +D+  +V      +    WNT++ G+ + G  +EA +  
Sbjct: 580 GLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETF 639

Query: 353 RDMLQGSFCPDEVTLASILSSC 374
           + M+     PD VT  ++LS+C
Sbjct: 640 KQMVATGRKPDYVTFVALLSAC 661


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 310/576 (53%), Gaps = 12/576 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           + F  L +    H   +K G    +   N ++  Y KC       K+F E   R+ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 134 TLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           T+I+G +N G   T   + + M      +D  +F S+L+       +EVG+++HS ++K+
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G+  N F  SAL+D+Y KC  VEDA  VF  +  R+ V WN ++S YA   +GD   A +
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQ--VGDRGTAFW 187

Query: 252 NL--MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
            L  M LEG++ D  TF+ L+         KL  Q+H  ++K     D  V  +++  Y+
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 310 KNGNIDDACRVFDGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           + G+I+DA RVFDG       + VSWN+++ GF Q+G   +A+K   +M       D   
Sbjct: 248 ECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYA 307

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            +++L SC  L+     +QVH   +K+G +    + ++LI  YSKCG I  A + F +  
Sbjct: 308 FSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP 367

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           +   + W S+I  YA HG  K ++++F  M    V+ D I F+ VL+ACSH GLV EG  
Sbjct: 368 KDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWS 427

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +   M SDY I P  EHY C+ DLLGR G L EA  L+ +MP EP +      +GAC+  
Sbjct: 428 FLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTC 487

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G I LA   A  LLELEP +   Y L+S+++   R W + A ++++M++    KVPG SW
Sbjct: 488 GDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSW 547

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           IE+  E+ +F + DRSHP    +Y  L     LMEE
Sbjct: 548 IEVKNEVRSFNAEDRSHPNCEEIYLRLGE---LMEE 580



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 209/381 (54%), Gaps = 7/381 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A  G+++ G+Q+HS ++K+G    +   + +L +Y KC+  +D  ++F  + 
Sbjct: 103 FGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSIN 162

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRR--MLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN VTWN LISG    G   T ++    M L+ V +D  TF  LL      D  ++  +
Sbjct: 163 IRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQ 222

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDL--VLWNVMVSCYAL 240
           +H+ I+K G   +  V +A++  Y +CG +EDA RVFD  +  RDL  V WN +++ ++ 
Sbjct: 223 VHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQ 282

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           + L + A+  F  MR + +  D++ FS+++ SC  L + +LG+Q+H LV+K  F+ +  V
Sbjct: 283 SGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFV 342

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           A+SL+ MY+K G I+DA + FD     + ++WN+++ G+ Q+G G+ A+ L   M     
Sbjct: 343 ASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRV 402

Query: 361 CPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             D +T  ++L++C  + +  E    + +     G+   +     +I+   + G +  A 
Sbjct: 403 KLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAK 462

Query: 420 QCFGSVK-EPDLVTWTSIIGA 439
               ++  EPD + W +++GA
Sbjct: 463 ALIEAMPFEPDAMVWKTLLGA 483



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L+  +    LQ G+Q+H  ++K G      + + ++ +Y KC   +D  K FD
Sbjct: 305 HYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFD 364

Query: 123 EMRVRNIVTWNTLISGIINCG-GNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
                + + WN+LI G    G G +    F  M    V+LDHITF ++L AC     +E 
Sbjct: 365 ATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEE 424

Query: 181 GRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
           G   L S     G        + ++DL G+ G +++A+ + + +    D ++W  ++
Sbjct: 425 GWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 481


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 208/652 (31%), Positives = 349/652 (53%), Gaps = 60/652 (9%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +   LK   +    + G  +H+ +   G    + + N ++ +Y +C A+++  ++FD
Sbjct: 145 HYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFD 204

Query: 123 EMRVR---NIVTWNTLISGIINCGGNV--TPYFRRMLLD-NVRLDHITFNSLLRACVQAD 176
           EMR R   ++V+WN++++  +  G ++     F RM  D  +R D ++  ++L AC    
Sbjct: 205 EMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVG 264

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
               G+++H + L+ G   + FV +A+VD+Y KCG +E+A +VF+ +  +D+V WN MV+
Sbjct: 265 AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVT 324

Query: 237 CY-----------------------------------ALNCLGDGAIAVFNLMRLEGMKG 261
            Y                                   A   LG  A+ VF  M L G + 
Sbjct: 325 GYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEP 384

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-------VLVATSLVDMYAKNGNI 314
           +  T  SL++ C + G+   G++ H   IK   +LD       ++V  +L+DMY+K  + 
Sbjct: 385 NVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSP 444

Query: 315 DDACRVFDGMTAKN--VVSWNTMVVGFGQNGDGREAVKLLRDMLQGS--FCPDEVTLASI 370
             A  +FD +  K+  VV+W  ++ G  Q+G+  EA++L   MLQ      P+  T++  
Sbjct: 445 KAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCA 504

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQ-AFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           L +C  L      RQ+HAY ++N  + A L + N LI+ YSK G +  A   F ++ + +
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            V+WTS++  Y  HG  +E++++F +M    + PD + F+ VL ACSH G+V +G+ YFN
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFN 624

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            M  D+ ++P +EHY C+ DLL R G L EA +L+  MP++P      A + AC+V+ ++
Sbjct: 625 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANV 684

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            L ++AA +LLELE     +Y L+SN+YA+ RCW DVAR+R +M++    K PGCSW++ 
Sbjct: 685 ELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQG 744

Query: 610 AGEIHTFVSSDRSHPQAVHMYAML------CTVFGLMEENNVSGHCNVLDKE 655
                TF + D SHP +  +Y +L          G + +N  + H +V D+E
Sbjct: 745 RKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALH-DVDDEE 795



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 202/409 (49%), Gaps = 52/409 (12%)

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            +  WN LI   ++ G   +V   +RRM     R DH TF  +L+AC +      G  +H
Sbjct: 109 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 168

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNC 242
           + +   GF  N FV + LV +YG+CG  E+AR+VFDE+  R   DLV WN +V+ Y    
Sbjct: 169 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 243 LGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
               A+ +F  M  + G++ D  +  +++ +C ++G+   G+Q+HG  ++     DV V 
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 288

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV------------------------ 337
            ++VDMYAK G +++A +VF+ M  K+VVSWN MV                         
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 338 -----------GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
                      G+ Q G G EA+ + R ML     P+ VTL S+LS C S       ++ 
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 387 HAYAIK-------NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD--LVTWTSII 437
           H +AIK       N     L + NALI+ YSKC S   A   F  +   D  +VTWT +I
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 438 GAYAFHGLSKESIEVFEKMLS--HAVRPDSIAFLEVLSACSHGGLVSEG 484
           G  A HG + E++E+F +ML   + V P++      L AC+  G +  G
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 15/271 (5%)

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-- 324
           S+L + C +L S++L    H  ++ Q    D    T ++ MY    +   A  V   +  
Sbjct: 52  STLFHQCKSLASAEL---THQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHP 105

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL-SISCET 383
           ++  V  WN ++      G   + ++L R M +  + PD  T   +L +CG + S  C  
Sbjct: 106 SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 165

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP---DLVTWTSIIGAY 440
             VHA    +G +  + + N L++ Y +CG+   A Q F  ++E    DLV+W SI+ AY
Sbjct: 166 -SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224

Query: 441 AFHGLSKESIEVFEKMLSH-AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
              G S  ++++FE+M     +RPD+++ + VL AC+  G  S G +     +    +  
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFE 283

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           D      + D+  + G++ EA  +   M ++
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 317/559 (56%), Gaps = 11/559 (1%)

Query: 85  LHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140
           L+  ++KLG    +   + +  + +Y +    D   ++FD    RN   WNT+I G +  
Sbjct: 240 LYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQN 299

Query: 141 NCGGNVTPYFRR-MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           NC       F + M  +   LD +TF S L A  Q   +++GR+LH++ILK    L   +
Sbjct: 300 NCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVI 359

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A++ +Y +CG +  + +VF  +L RD+V WN MVS +  N L D  + +   M+ +G 
Sbjct: 360 LNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGF 419

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T ++L++    L S ++G+Q H  +I+     + +    L+DMYAK+G I  A +
Sbjct: 420 MVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY-LIDMYAKSGLITTAQQ 478

Query: 320 VFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
           +F+  +   ++  +WN M+ G+ QNG   E   + R M++ +  P+ VTLASIL +C  +
Sbjct: 479 LFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPM 538

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 +Q+H +AI+  +   + +  AL++ YSK G+I  A   F    E + VT+T++I
Sbjct: 539 GTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMI 598

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            +Y  HG+ + ++ +F  ML   ++PDS+ F+ +LSACS+ GLV EGLR F  M  +Y I
Sbjct: 599 LSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKI 658

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL-GAFIGACKVHGSIGLAKWAA 556
            P SEHY C+ D+LGRVG + EAY+ +  +  E  +  + G+ +GAC++HG   L K  A
Sbjct: 659 QPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVA 718

Query: 557 EKLLELEPSKPVN--YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
            KLLE+E    +   + L+SN+YA+E  W +V R+RK MR     K  GCSW+E+AG ++
Sbjct: 719 NKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVN 778

Query: 615 TFVSSDRSHPQAVHMYAML 633
            F+S D  HPQ   +Y ML
Sbjct: 779 CFMSRDHKHPQCAEIYQML 797



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 257/502 (51%), Gaps = 23/502 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC--------KAFDD- 116
           +S  LK  A+   L+ GK LH H+++    +   + N +L++Y  C         A+D  
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 117 ----MEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLR 170
               + ++FD MR RN+V WNT+IS  +     +  +  FR M+   +R   ++F ++  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 171 ACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           A  + +D +    L+  ++K+G  +  + FV S+ + +Y + G V+ AR +FD  L R+ 
Sbjct: 227 AVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 229 VLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            +WN M+  Y  N     AI +F  +M  E    D  TF S + +   L    LGRQ+H 
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHA 346

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            ++K S  L V++  +++ MY++ G+I  + +VF  M  ++VV+WNTMV  F QNG   E
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
            + L+ +M +  F  D VTL ++LS   +L      +Q HAY I++G+Q F  ++  LI+
Sbjct: 407 GLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMDGYLID 465

Query: 408 AYSKCGSIAGALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
            Y+K G I  A Q F   S  + D  TW ++I  Y  +GLS+E   VF KM+   VRP++
Sbjct: 466 MYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNA 525

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           +    +L AC+  G +  G +     I  + +  +    T L D+  + G +  A ++ A
Sbjct: 526 VTLASILPACNPMGTIGLGKQIHGFAIRCF-LNQNVFVGTALLDMYSKSGAITYAENVFA 584

Query: 526 SMPIEPRSDTLGAFIGACKVHG 547
              +E  S T    I +   HG
Sbjct: 585 E-TLEKNSVTYTTMILSYGQHG 605



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 197/389 (50%), Gaps = 20/389 (5%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   ++  +L  G+QLH++I+K     ++ + N ++ +Y +C +     K+F  M  R+
Sbjct: 328 ALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERD 387

Query: 129 IVTWNTLISGIINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +VTWNT++S  +  G    G +  +   M      +D +T  +LL         E+G++ 
Sbjct: 388 VVTWNTMVSAFVQNGLDDEGLMLVF--EMQKQGFMVDSVTLTALLSLASNLRSQEIGKQA 445

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYALNC 242
           H+++++ G      +   L+D+Y K G +  A+++F++     RD   WN M++ Y  N 
Sbjct: 446 HAYLIRHGIQFEG-MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNG 504

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L +   AVF  M  + ++ +  T +S++ +C  +G+  LG+QIHG  I+   + +V V T
Sbjct: 505 LSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGT 564

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMY+K+G I  A  VF     KN V++ TM++ +GQ+G G  A+ L   ML     P
Sbjct: 565 ALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKP 624

Query: 363 DEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           D VT  +ILS+C    +  E  ++       Y I+   + +  + + L     + G +  
Sbjct: 625 DSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADML----GRVGRVXE 680

Query: 418 ALQCFGSVKEP--DLVTWTSIIGAYAFHG 444
           A +    + E       W S++GA   HG
Sbjct: 681 AYEFVKGLGEEGNTFRIWGSLLGACRIHG 709



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 226/487 (46%), Gaps = 53/487 (10%)

Query: 120 LFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD-NVRLDHITFNSLLRACVQAD 176
           LFD +     V WNT+I G I  N   +   ++ RM    + + D  TF+S L+AC QA 
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC-------GFVED------ARRVFDEV 223
            +++G+ LH  +L+  FG +  V ++L+++Y  C       G   D       RRVFD +
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R++V WN M+S Y        A  +F  M   G++    +F ++  +   +       
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNAN 238

Query: 284 QIHGLVIKQSFDL--DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
            ++GLV+K   D   D  V +S + MYA+ G +D A  +FD    +N   WNTM+ G+ Q
Sbjct: 239 VLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 342 NGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           N    EA+ L   +++   F  D+VT  S L++   L      RQ+HAY +K+     + 
Sbjct: 299 NNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVV 358

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I NA+I  YS+CGSI  + + F ++ E D+VTW +++ A+  +GL  E + +  +M    
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQG 418

Query: 461 VRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNL------------MISDYHI 497
              DS+    +LS  S           H  L+  G+++  +            +I+    
Sbjct: 419 FMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQ 478

Query: 498 L--------PDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVH 546
           L         D   +  +     + GL  E + +   M    + P + TL + + AC   
Sbjct: 479 LFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPM 538

Query: 547 GSIGLAK 553
           G+IGL K
Sbjct: 539 GTIGLGK 545



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 131/287 (45%), Gaps = 19/287 (6%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFS 267
           + G    A  +FD +     VLWN ++  +  N +   A+  +  MR     K D +TFS
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFS 108

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-------------NGNI 314
           S + +C    S KLG+ +H  V++  F    +V  SL++MY+                N 
Sbjct: 109 STLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNC 168

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D   RVFD M  +NVV+WNTM+  + +     EA K+ R M++    P  V+  ++  + 
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAV 228

Query: 375 GSLSISCETRQVHAYAIKNG---VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
             ++       ++   +K G   V  F  + +A+   Y++ G +  A + F    E +  
Sbjct: 229 WRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIF-MYAELGCVDFAREIFDCCLERNTE 287

Query: 432 TWTSIIGAYAFHGLSKESIEVF-EKMLSHAVRPDSIAFLEVLSACSH 477
            W ++IG Y  +    E+I++F + M S     D + FL  L+A S 
Sbjct: 288 VWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQ 334


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 198/603 (32%), Positives = 326/603 (54%), Gaps = 9/603 (1%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+   +  A     + G QLH H +K        +    L +Y KC+   D  K+F
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVF 297

Query: 122 DEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           + +      ++N +I G    + G      F+ +  +N+  D I+ +  L AC       
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHL 357

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH   +K G G N  V++ ++D+YGKCG + +A  +F+E+  RD V WN +++ + 
Sbjct: 358 EGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHE 417

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N      +++F  M    M+ D FT+ S+V +C    +   G +IHG +IK    LD  
Sbjct: 418 QNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWF 477

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V ++LVDMY K G + +A ++   +  K  VSWN+++ GF        A +    ML+  
Sbjct: 478 VGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG 537

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  T A++L  C +++     +Q+HA  +K  + + + I + L++ YSKCG++  + 
Sbjct: 538 IIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSR 597

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F    + D VTW+++I AYA+HGL +++I +FE+M    V+P+   F+ VL AC+H G
Sbjct: 598 LMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMG 657

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            V +GL YF  M+S Y + P  EHY+C+ DLLGR G + EA  L+ SMP E         
Sbjct: 658 YVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTL 717

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  CK+ G++ +A+ A   LL+L+P     Y L++NVYA    W +VA++R +M++    
Sbjct: 718 LSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLK 777

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCN----VLDKE 655
           K PGCSWIE+  E+HTF+  D++HP++  +Y        L++E   +G+      +LD+E
Sbjct: 778 KEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYE---QTHLLVDEMKWAGYVPDIDFMLDEE 834

Query: 656 MDE 658
           M+E
Sbjct: 835 MEE 837



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 247/495 (49%), Gaps = 34/495 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDM- 117
           +S  L+  +    L  GKQ+H+ ++  G    + + N +L  Y K        K FD M 
Sbjct: 9   FSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMP 68

Query: 118 -----------------------EKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRR 152
                                  + LFD M  R++V+WN+L+S  ++ G N      F R
Sbjct: 69  QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M    +  D+ TF  +L+AC   +D  +G ++H   +++GF  +    SALVD+Y KC  
Sbjct: 129 MRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK 188

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++DA RVF E+  R+LV W+ +++ Y  N      + +F  M   GM     T++S+  S
Sbjct: 189 LDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRS 248

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  L + KLG Q+HG  +K  F  D ++ T+ +DMYAK   + DA +VF+ +      S+
Sbjct: 249 CAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSY 308

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++VG+ +   G +A+ + + + + +   DE++L+  L++C  +    E  Q+H  A+K
Sbjct: 309 NAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVK 368

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G+   + + N +++ Y KCG++  A   F  ++  D V+W +II A+  +    +++ +
Sbjct: 369 CGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSL 428

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F  ML   + PD   +  V+ AC+    ++ G      +I     L D    + L D+ G
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGL-DWFVGSALVDMYG 487

Query: 513 RVGLLVEAYDLLASM 527
           + G+L+EA  + A +
Sbjct: 488 KCGMLMEAEKIHARL 502



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 193/400 (48%), Gaps = 54/400 (13%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           +TF+ +L+ C     +  G+++H+ ++  GF    +V++ L+  Y K   +  A +VFD 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 223 VLCRDLVLWNVMV-------------------------------SCYALNCLGDGAIAVF 251
           +  RD++ WN ++                               SCY  N +   +I +F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             MR   +  DY TF+ ++ +C  +    LG Q+H L I+  F+ DV+  ++LVDMY+K 
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
             +DDA RVF  M  +N+V W+ ++ G+ QN    E +KL +DML+      + T AS+ 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            SC  LS      Q+H +A+K+       I  A ++ Y+KC  +  A + F ++  P   
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGL 480
           ++ +II  YA      +++++F+ +  + +  D I+    L+ACS           HG  
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLA 366

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           V  GL  FN+ +++            + D+ G+ G L+EA
Sbjct: 367 VKCGLG-FNICVAN-----------TILDMYGKCGALMEA 394



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 48/320 (15%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            TFS ++  C  L +   G+Q+H  +I   F   + VA  L+  Y K+  ++ A +VFD 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 324 MTAKNVVSWNTMVVGFG-------------------------------QNGDGREAVKLL 352
           M  ++V+SWNT++ G+                                 NG  R+++++ 
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M       D  T A IL +C  +       QVH  AI+ G +  +   +AL++ YSKC
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
             +  A + F  + E +LV W+++I  Y  +    E +++F+ ML   +      +  V 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 473 SACSHGGLVSEGLRYFNL--------MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            +C+       GL  F L        + SD+    DS   T   D+  +   + +A+ + 
Sbjct: 247 RSCA-------GLSAFKLGTQLHGHALKSDFAY--DSIIGTATLDMYAKCERMFDAWKVF 297

Query: 525 ASMPIEPRSDTLGAFIGACK 544
            ++P  PR       +G  +
Sbjct: 298 NTLPNPPRQSYNAIIVGYAR 317



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 32/196 (16%)

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           ++T + IL  C +L      +QVH   I  G    + + N L+  Y K   +  A + F 
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 424 SVKEPDLVTWTSIIGAYA-------------------------------FHGLSKESIEV 452
            + + D+++W ++I  YA                                +G++++SIE+
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F +M S  +  D   F  +L ACS       GL+   L I       D    + L D+  
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQ-MGFENDVVTGSALVDMYS 184

Query: 513 RVGLLVEAYDLLASMP 528
           +   L +A+ +   MP
Sbjct: 185 KCKKLDDAFRVFREMP 200


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 202/612 (33%), Positives = 339/612 (55%), Gaps = 39/612 (6%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTLISGIINC 142
           H+ ++K GL N     +++L + V    FD +     +F+  +  N++ WNT++ G+ + 
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 143 GGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
              V+P   + RM+      +  TF  LL++C ++   E GR++H+ ++K+G  L+ +  
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121

Query: 201 SALVDLYGKCGFVEDARRVFDE------VLC-------------------------RDLV 229
           ++L+ +Y + G +EDAR+VFD       V C                         RD+V
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            WN M++ Y  NC  + A+ +F  M    ++ D  T  S++++C   GS +LGR+IH LV
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241

Query: 290 IKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
                F   + +  + + +Y+K G+++ A  +F+G++ K+VVSWNT++ G+      +EA
Sbjct: 242 DDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEA 301

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLSIENALI 406
           + L ++ML+    P++VT+ S+L +C  L      R +H Y  K   GV    ++  +LI
Sbjct: 302 LLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLI 361

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y+KCG I  A Q F S+    L +W ++I  +A HG +  + ++F +M  + + PD I
Sbjct: 362 DMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDI 421

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
             + +LSACSH GL+  G   F  +  DY+I P  EHY C+ DLLG  GL  EA +++  
Sbjct: 422 TLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHM 481

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           MP+EP      + + ACK+HG++ LA+  A+KL+E+EP    +Y L+SN+YA+   W DV
Sbjct: 482 MPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDV 541

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           AR+R+++      KVPGCS IEI   +H F+  D+ HPQ+  +Y ML  +  L+EE    
Sbjct: 542 ARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFV 601

Query: 647 GHCNVLDKEMDE 658
              + + +EM+E
Sbjct: 602 PDTSEVLQEMEE 613



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 38/413 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK    ++G+Q+H+ +MKLG          ++ +Y +        K FD       
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGII-NCG-GNVTPYFRRMLLD 156
                               K+FD +  R++V+WN +I+G + NCG       F+ M+  
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILK-VGFGLNCFVSSALVDLYGKCGFVED 215
           NVR D  T  S+L AC Q+  IE+GR +H+ +    GFG +  + +A + LY KCG VE 
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A  +F+ + C+D+V WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  
Sbjct: 270 ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 329

Query: 276 LGSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
           LG+  +GR IH  + K  +       + TSL+DMYAK G+I+ A +VF+ M  K++ SWN
Sbjct: 330 LGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWN 389

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
            M+ GF  +G    A  L   M +    PD++TL  +LS+C    +    R +     ++
Sbjct: 390 AMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQD 449

Query: 394 -GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
             +   L     +I+     G    A +    +  EPD V W S++ A   HG
Sbjct: 450 YNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHG 502



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 12/215 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKL--GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           L   A  G +  G+ +H +I K   G+ N  +L+  ++ +Y KC   +   ++F+ M  +
Sbjct: 324 LPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHK 383

Query: 128 NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++ +WN +I G    G     +  F RM  + +  D IT   LL AC  +  +++GR + 
Sbjct: 384 SLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIF 443

Query: 186 SFILK---VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSCYAL 240
             + +   +   L  +    ++DL G  G  ++A  +   + +  D V+W +++ +C   
Sbjct: 444 KSVTQDYNITPKLEHY--GCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMH 501

Query: 241 NCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
             L         LM +E    G Y   S++  + G
Sbjct: 502 GNLELAESFAQKLMEIEPENSGSYVLLSNIYATAG 536


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 326/603 (54%), Gaps = 13/603 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           + V A       G  +HS  ++  L + +++ N ++++Y       D E LF  M  R++
Sbjct: 253 MSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 312

Query: 130 VTWNTLISGII-NCGG-NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WNT+IS  + NC   +      ++   N   +H+TF+S L AC     +  G+ +H+ 
Sbjct: 313 ISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAI 372

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           +L++    N  V ++L+ +YGKC  +EDA +VF  +   D+V +NV++  YA+   G  A
Sbjct: 373 VLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKA 432

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK----LGRQIHGLVIKQSFDLDVLVATS 303
           + VF+ +R  G+K +Y T   ++N  G+  SS      GR +H  +I+  F  D  VA S
Sbjct: 433 MQVFSWIRSAGIKPNYIT---MINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANS 489

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK GN++ +  +F+ +T KN+VSWN ++    Q G G EA+KL  DM       D
Sbjct: 490 LITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLD 549

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V LA  LSSC SL+   E  Q+H   +K+G+ +   + NA ++ Y KCG +   LQ   
Sbjct: 550 RVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVP 609

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
                    W ++I  YA +G  KE+ E F++M++   +PD + F+ +LSACSH GLV +
Sbjct: 610 DQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDK 669

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ Y+N M S + + P  +H  C+ DLLGR+G   EA   +  MP+ P      + + + 
Sbjct: 670 GIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSS 729

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           + H ++ + + AA+KLLEL+P     Y L+SN+YA+   W DV +LR  M+    +K P 
Sbjct: 730 RTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTININKRPA 789

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE----NNVSGHCNVLDKEMDEC 659
           CSW+++  E+ TF   DR H  A  +YA L  +   + E     + S   +  D+E  E 
Sbjct: 790 CSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADTSSALHDTDEEQKEQ 849

Query: 660 TLW 662
            LW
Sbjct: 850 NLW 852



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 205/403 (50%), Gaps = 7/403 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+   + GL   + +   +LH+Y       D  +LF EM  RN+V+W  L+  + +
Sbjct: 63  GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSS 122

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        +R+M  + V  +   F +++  C   ++   G ++ S ++  G      V
Sbjct: 123 NGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSV 182

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++L+ ++G  G V+DA ++FD +   D +  N M+S Y+   +      VF+ MR  G+
Sbjct: 183 ANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGL 242

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  SL++ C +      G  IH L ++ S D  V V  +LV+MY+  G + DA  
Sbjct: 243 RPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 302

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F  M+ ++++SWNTM+  + QN +  +A+K L  +   +  P+ +T +S L +C S   
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGA 362

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + + VHA  ++  +Q  L + N+LI  Y KC S+  A + F S+   D+V++  +IG 
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGG 422

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
           YA      ++++VF  + S  ++P+ I  + +     HG   S
Sbjct: 423 YAVLEDGTKAMQVFSWIRSAGIKPNYITMINI-----HGSFTS 460



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 197/410 (48%), Gaps = 6/410 (1%)

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQA---DDI 178
           M  R   TW T +SG + CG +V  +   R M    V L      SL+ AC +    + I
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             G  +H+   + G   N ++ +AL+ LYG  G V DARR+F E+  R++V W  ++   
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVAL 120

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           + N   +  +  +  MR EG+  +   F+++V+ CG+L +   G Q+   VI       V
Sbjct: 121 SSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQV 180

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            VA SL+ M+   G + DA ++FD M   + +S N M+  +   G   +   +  DM   
Sbjct: 181 SVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD  TL S++S C S         +H+  +++ + + +++ NAL+N YS  G ++ A
Sbjct: 241 GLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F ++   DL++W ++I +Y  +  S ++++   ++      P+ + F   L ACS  
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSP 360

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           G + +G +  + ++    +  +      L  + G+   + +A  +  SMP
Sbjct: 361 GALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 409



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 175/322 (54%), Gaps = 3/322 (0%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H +    H  +S AL   +  G L  GK +H+ +++L L   L + N ++ +Y KC + +
Sbjct: 340 HTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSME 399

Query: 116 DMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D EK+F  M   ++V++N LI G  ++  G      F  +    ++ ++IT  ++  +  
Sbjct: 400 DAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFT 459

Query: 174 QADDI-EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            ++D+   GR LH++I++ GF  + +V+++L+ +Y KCG +E +  +F+ +  +++V WN
Sbjct: 460 SSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWN 519

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++  A    G+ A+ +F  M+  G K D    +  ++SC +L S + G Q+HGL +K 
Sbjct: 520 AIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS 579

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             D D  V  + +DMY K G +++  ++      +    WNT++ G+ + G  +EA +  
Sbjct: 580 GLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETF 639

Query: 353 RDMLQGSFCPDEVTLASILSSC 374
           + M+     PD VT  ++LS+C
Sbjct: 640 KQMVAMGRKPDYVTFVALLSAC 661


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 198/606 (32%), Positives = 327/606 (53%), Gaps = 17/606 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S+ +     +K   +     Q KQLH+  ++    +  S  + V+ +Y   K   +   +
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLV 61

Query: 121 FDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL-------DHITFNSLLRACV 173
           F  +    ++ W +    +I C  + +  F R L   V +       DH  F S+L++C 
Sbjct: 62  FKTLESPPVLAWKS----VIRCFTDQS-LFSRALASFVEMRASGRCPDHNVFPSVLKSCT 116

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
              D+  G  +H FI+++G   + +  +AL+++Y K   ++  R+VF+ +  +D+V +N 
Sbjct: 117 MMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNT 176

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +++ YA + + + A+ +   M    +K D FT SS++           G++IHG VI++ 
Sbjct: 177 VIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG 236

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
            D DV + +SLVDMYAK+  I+D+ RVF  +  ++ +SWN++V G+ QNG   EA++L R
Sbjct: 237 IDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFR 296

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M+     P  V  +S++ +C  L+     +Q+H Y ++ G    + I +AL++ YSKCG
Sbjct: 297 QMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCG 356

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           +I  A + F  +   D V+WT+II  +A HG   E++ +FE+M    V+P+ +AF+ VL+
Sbjct: 357 NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 416

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           ACSH GLV E   YFN M   Y +  + EHY  + DLLGR G L EAYD ++ M +EP  
Sbjct: 417 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTG 476

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
                 + +C VH ++ LA+  AEK+  ++      Y L+ N+YAS   W ++A+LR  +
Sbjct: 477 SVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRV 536

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHC 649
           R     K P CSWIE+  + H FVS DRSHP    +   L  V   ME+     + SG  
Sbjct: 537 RKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVL 596

Query: 650 NVLDKE 655
           + +D+E
Sbjct: 597 HDVDEE 602


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 179/481 (37%), Positives = 296/481 (61%), Gaps = 2/481 (0%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M +  + ++   ++S+L  C+    I  G+R+H+ ++K  +    ++ + L+ LY KC  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           + DARRV DE+  R++V W  M+S Y+       A+ +F  M + G   + FTF++++ S
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C +    +LGRQIH LVIK SF+  + V +SL+DMYAK G I +A RVFDG+  ++VVS 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             ++ G+ Q G   EA+ L R + +     + VT AS+L++   L+     RQVH++ ++
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
             +  ++ ++N+LI+ YSKCGS+  + + F S+ E  +++W +++  Y+ HGL +E++E+
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 453 FEKML-SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH-ILPDSEHYTCLTDL 510
           F+ M   + V+PDS+ FL VLS CSHGG+   GL  F  M++      P+ EHY C+ DL
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
            GR G + EA++ +  MP EP +   G+ +GAC+VH ++ + ++ A +LLE+E     NY
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            ++SN+YAS   W DV  +R++M++    K PG SWIE+   +HTF +SDRSHP+   ++
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVF 480

Query: 631 A 631
           A
Sbjct: 481 A 481



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 208/371 (56%), Gaps = 6/371 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G+++H+H++K      + L+ +++ +Y KC+   D  ++ DEM  RN+V+W  +ISG
Sbjct: 26  IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 85

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        F  ML+     +  TF ++L +C  +   ++GR++HS ++K  F  +
Sbjct: 86  YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 145

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+L+D+Y K G + +ARRVFD +  RD+V    ++S YA   L + A+ +F  ++ 
Sbjct: 146 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 205

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EGM+ +Y T++S++ +   L +   GRQ+H  V++      V++  SL+DMY+K G++  
Sbjct: 206 EGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTY 265

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCG 375
           + R+FD M  + V+SWN M+VG+ ++G GREAV+L + M  +    PD VT  ++LS C 
Sbjct: 266 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 325

Query: 376 SLSISCETRQVHAYAI--KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVT 432
              +     ++    +  K+G +  +     +++ + + G +  A +    +  EP    
Sbjct: 326 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 385

Query: 433 WTSIIGAYAFH 443
           W S++GA   H
Sbjct: 386 WGSLLGACRVH 396



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 8/237 (3%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E   S +  Y+  L   +    L  G+Q+HSH+++  L   + LQN ++ +Y KC +   
Sbjct: 206 EGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTY 265

Query: 117 MEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDN-VRLDHITFNSLLRACV 173
             ++FD M  R +++WN ++ G      G      F+ M  +N V+ D +TF ++L  C 
Sbjct: 266 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 325

Query: 174 QADDIEVGRRLHSFIL--KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL-VL 230
                + G  +   ++  K GF         +VDL+G+ G VE+A     ++       +
Sbjct: 326 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 385

Query: 231 WNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQI 285
           W  ++ +C     +  G      L+ +E    G+Y   S+L  S G     +  R++
Sbjct: 386 WGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 442


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 188/555 (33%), Positives = 315/555 (56%), Gaps = 11/555 (1%)

Query: 79  LQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L+QG+ LH+ I++  L    + L   ++ +Y +C+  +   K FDEM  + +VTWN LI+
Sbjct: 74  LKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133

Query: 138 GIINCGGN--VTPYFRRML---LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           G    G +      ++ M+    + ++ D ITF+S L AC    DI  GR + +  +  G
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASG 193

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +  +  V +AL+++Y KCG +E AR+VFD +  RD++ WN M+S YA       A+ +F 
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQ 253

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-N 311
            M     K +  TF  L+ +C  L   + GR IH  V +  ++ D+++   L++MY K +
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCS 313

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            ++++A +VF+ M  ++V++WN ++V + Q G  ++A+ + + M   +  P+E+TL+++L
Sbjct: 314 SSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVL 373

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           S+C  L    + + VHA       +A + +EN+L+N Y++CGS+   +  F ++++  LV
Sbjct: 374 SACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLV 433

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W+++I AYA HG S+  +E F ++L   +  D +  +  LSACSHGG++ EG++ F  M
Sbjct: 434 SWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSM 493

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           + D+ + PD  H+ C+ DLL R G L  A +L+  MP  P +    + +  CK+H     
Sbjct: 494 VGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKR 553

Query: 552 AKWAAEKLLELEPS-KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           A   A+KL ELE   +     L+SNVYA    W DV   RK        K PGCS+IEI 
Sbjct: 554 AARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEIN 610

Query: 611 GEIHTFVSSDRSHPQ 625
             +H FV+ D+SHP+
Sbjct: 611 DTVHEFVAGDKSHPE 625



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 230/428 (53%), Gaps = 8/428 (1%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHIT 164
           +Y KC +  D   +F  +   N V+W  +++     G       Y+RRM+L+ +R D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           F   +  C  + D++ G+ LH+ IL+      +  + +AL+ +Y +C  +E AR+ FDE+
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLM---RLEGMKGDYFTFSSLVNSCGTLGSSK 280
             + LV WN +++ Y+ N    GA+ ++  M     EGMK D  TFSS + +C  +G   
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR+I    +   +  D +V  +L++MY+K G+++ A +VFD +  ++V++WNTM+ G+ 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           + G   +A++L + M      P+ VT   +L++C +L    + R +H    ++G ++ L 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 401 IENALINAYSKC-GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           I N L+N Y+KC  S+  A Q F  ++  D++TW  +I AY  +G +K+++++F++M   
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V P+ I    VLSAC+  G   +G +  + +I+      D      L ++  R G L +
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 520 AYDLLASM 527
              + A++
Sbjct: 420 TVGVFAAI 427



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 215/408 (52%), Gaps = 27/408 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL      G + QG+++ +  +  G  +   +QN ++++Y KC + +   K+FD ++
Sbjct: 166 FSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK 225

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+++ WNT+ISG    G        F+RM  ++ + + +TF  LL AC   +D+E GR 
Sbjct: 226 NRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRA 285

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +H  + + G+  +  + + L+++Y KC   +E+AR+VF+ +  RD++ WN+++  Y    
Sbjct: 286 IHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYG 345

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F  M+LE +  +  T S+++++C  LG+ + G+ +H L+       DV++  
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL++MY + G++DD   VF  +  K++VSW+T++  + Q+G  R  ++   ++LQ     
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAA 465

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYS 410
           D+VT+ S LS+C            H   +K GVQ FLS+               +++  S
Sbjct: 466 DDVTMVSTLSACS-----------HGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLS 514

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           + G +  A      +   PD V WTS++     H  +K +  V +K+ 
Sbjct: 515 RAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF 562


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 315/559 (56%), Gaps = 5/559 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+++H  + KLG    + +   ++H+Y +         LFD+M  R++ +WN +ISG
Sbjct: 188 LVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISG 247

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +I  G           M L+ + +D +T  S+L  C Q  DI     +H +++K G    
Sbjct: 248 LIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFE 307

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FVS+AL+++Y K G + DA++VF ++  RD+V WN +++ Y  N     A   F  M+L
Sbjct: 308 LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL 367

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLVATSLVDMYAKNGNID 315
            G++ D  T  SL +        K  R +HG ++++ + ++ V++  +++DMYAK G ID
Sbjct: 368 NGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVID 427

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSC 374
            A +VF+ +  K+VVSWNT++ G+ QNG   EA+++ R M +      ++ T  SIL++ 
Sbjct: 428 SAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAY 487

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             +    +  ++H + IK  +   + +   LI+ Y KCG +  A+  F  V     V W 
Sbjct: 488 AHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWN 547

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +II  +  HG  ++++++F +M    V+PD + F+ +LSACSH GLV EG  +F+LM  +
Sbjct: 548 AIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QE 606

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I P  +HY C+ DLLGR G L  AYD +  MP+ P +   GA +GAC++HG+I L K+
Sbjct: 607 YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKF 666

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           A+++L E++      Y L+SN+YA+   W  V ++R + R+    K PG S IE+   + 
Sbjct: 667 ASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVD 726

Query: 615 TFVSSDRSHPQAVHMYAML 633
            F + ++SHP+   +YA L
Sbjct: 727 IFYTGNQSHPKCKEIYAEL 745



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 152/505 (30%), Positives = 264/505 (52%), Gaps = 25/505 (4%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            K+LH+ ++  G      +  +++++Y            FD+++ +++ TWN++IS  + 
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 142 CG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G     +  +++ +L+   + D  TF  +L+AC    D   GR++H ++ K+GF  + F
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVF 208

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+++L+ +Y + GFV  AR +FD++  RD+  WN M+S    N     A+ V + MRLEG
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D  T +S++  C  LG       IH  VIK   + ++ V+ +L++MYAK GN+ DA 
Sbjct: 269 INMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQ 328

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           +VF  M  ++VVSWN+++  + QN D   A      M      PD +TL S+ S      
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 379 ISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
               +R VH + ++ G +   + I NA+++ Y+K G I  A + F  +   D+V+W ++I
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 438 GAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDY 495
             Y  +GL+ E+IEV+  M     ++ +   ++ +L+A +H G + +G+R + +L+ ++ 
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNL 508

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
           H+  D    TCL DL G+ G LV+A  L   +P E  S    A I    +HG        
Sbjct: 509 HL--DVFVGTCLIDLYGKCGRLVDAMCLFYQVPRES-SVPWNAIISCHGIHGH------- 558

Query: 556 AEKLLEL------EPSKPVNYALVS 574
            EK L+L      E  KP +   +S
Sbjct: 559 GEKALKLFREMQDEGVKPDHVTFIS 583



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 202/380 (53%), Gaps = 5/380 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A+ G +     +H +++K GL  +L + N ++++Y K     D +K+F +M +R++
Sbjct: 280 LPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDV 339

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+        VT   +F +M L+ +  D +T  SL     Q+ D +  R +H F
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF 399

Query: 188 ILKVGFGLNCFV-SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           I++ G+ +   V  +A++D+Y K G ++ A +VF+ +  +D+V WN ++S Y  N L   
Sbjct: 400 IMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASE 459

Query: 247 AIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI V+ +M     +K +  T+ S++ +   +G+ + G +IHG +IK +  LDV V T L+
Sbjct: 460 AIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLI 519

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K G + DA  +F  +  ++ V WN ++   G +G G +A+KL R+M      PD V
Sbjct: 520 DLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHV 579

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T  S+LS+C    +  E +       + G++  L     +++   + G +  A      +
Sbjct: 580 TFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDM 639

Query: 426 K-EPDLVTWTSIIGAYAFHG 444
              PD   W +++GA   HG
Sbjct: 640 PLHPDASIWGALLGACRIHG 659



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 197/395 (49%), Gaps = 32/395 (8%)

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
           P+  R    N  +D   FNSL  +C +     + +RLH+ ++  G   + F+S  LV+LY
Sbjct: 65  PFHWRQPAKNEEID---FNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLY 118

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTF 266
              G V  +R  FD++  +D+  WN M+S Y  N     AI  F  L+ +   + D++TF
Sbjct: 119 ASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTF 178

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
             ++ +C TL     GR+IH  V K  F  DV VA SL+ MY++ G +  A  +FD M  
Sbjct: 179 PPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPF 235

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +++ SWN M+ G  QNG+  +A+ +L +M       D VT+ASIL  C  L        +
Sbjct: 236 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLI 295

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H Y IK+G++  L + NALIN Y+K G++  A + F  +   D+V+W SII AY  +   
Sbjct: 296 HLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDP 355

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDY 495
             +   F KM  + + PD +  + + S  +           HG ++  G     ++I + 
Sbjct: 356 VTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGN- 414

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
                      + D+  ++G++  A+ +   +P++
Sbjct: 415 ----------AVMDMYAKLGVIDSAHKVFNLIPVK 439


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 211/646 (32%), Positives = 340/646 (52%), Gaps = 59/646 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            K   +   ++ G+  H+  +  G  + + + N ++ +Y +C++  D  K+FDEM V ++
Sbjct: 134 FKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDV 193

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+WN++I      G        F RM  +   R D+IT  ++L  C       +G++LH 
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHC 253

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           F +      N FV + LVD+Y KCG +++A  VF  +  +D+V WN MV+ Y+     + 
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFED 313

Query: 247 AIAVFNLMRLEGMKGDYFTFS-----------------------------------SLVN 271
           A+ +F  M+ E +K D  T+S                                   S+++
Sbjct: 314 AVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDL-------DVLVATSLVDMYAKNGNIDDACRVFDGM 324
            C ++G+   G++IH   IK   DL       + +V   L+DMYAK   +D A  +FD +
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433

Query: 325 TAK--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC---PDEVTLASILSSCGSLSI 379
           + K  +VV+W  M+ G+ Q+GD  +A++LL +M +   C   P+  T++  L +C SL+ 
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAA 492

Query: 380 SCETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
               +Q+HAYA++N   A  L + N LI+ Y+KCGSI+ A   F ++   + VTWTS++ 
Sbjct: 493 LRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            Y  HG  +E++ +F++M     + D +  L VL ACSH G++ +G+ YFN M + + + 
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY CL DLLGR G L  A  L+  MP+EP      AF+  C++HG + L ++AAEK
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           + EL  +   +Y L+SN+YA+   W DV R+R +MR     K PGCSW+E      TF  
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732

Query: 619 SDRSHPQAVHMYAML------CTVFGLMEENNVSGHCNVLDKEMDE 658
            D++HP A  +Y +L          G + E   + H +V D+E D+
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH-DVDDEEKDD 777



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 157/315 (49%), Gaps = 4/315 (1%)

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD--LVLWNVMVSCYA 239
           + +H  +L  G  L   ++S L+  Y   G +  A  +       D  +  WN ++  Y 
Sbjct: 45  KLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   +  + +F LM       D +TF  +  +CG + S + G   H L +   F  +V 
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVF 163

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +LV MY++  ++ DA +VFD M+  +VVSWN+++  + + G  + A+++   M    
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223

Query: 360 FC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
            C PD +TL ++L  C SL      +Q+H +A+ + +   + + N L++ Y+KCG +  A
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F ++   D+V+W +++  Y+  G  ++++ +FEKM    ++ D + +   +S  +  
Sbjct: 284 NTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQR 343

Query: 479 GLVSEGLRYFNLMIS 493
           GL  E L     M+S
Sbjct: 344 GLGYEALGVCRQMLS 358



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 129/266 (48%), Gaps = 10/266 (3%)

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS-LVDMYAKNGNIDDACRVFDGMTAK 327
            ++ C T+   KL   IH  ++  SF +  L  TS L+  Y   G +  A  +       
Sbjct: 34  FIHKCKTISQVKL---IHQKLL--SFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPS 88

Query: 328 N--VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +  V  WN+++  +G NG   + + L   M   S+ PD  T   +  +CG +S       
Sbjct: 89  DAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGES 148

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
            HA ++  G  + + + NAL+  YS+C S++ A + F  +   D+V+W SII +YA  G 
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK 208

Query: 446 SKESIEVFEKMLSH-AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            K ++E+F +M +    RPD+I  + VL  C+  G  S G +     ++   ++ +    
Sbjct: 209 PKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS-EMIQNMFVG 267

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIE 530
            CL D+  + G++ EA  + ++M ++
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVK 293


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/580 (34%), Positives = 312/580 (53%), Gaps = 7/580 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QL S  +K GL + +   + +L VY KC    D  ++FD M VRN V+WN LI+G   
Sbjct: 114 GAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAE 173

Query: 142 C--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                     F  M    +  D  TF +LL          + ++LH  I K G  L   V
Sbjct: 174 SRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVV 233

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEG 258
            +A +  Y +CG   D+RR+FD +  RDL+ WN M+  YA + + D A+  F  +MR  G
Sbjct: 234 LNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESG 293

Query: 259 MKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---NGNI 314
           ++ D ++F+S+V+ C   G   + GR IH LV+K   +    V  +++ MY +   N  +
Sbjct: 294 VQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMM 353

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +DA + FD +  K+ VSWN+M+ G+  +G   +A++  R M   +   DE  L++ L SC
Sbjct: 354 EDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSC 413

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L++    RQVH+  I++G  +   + ++LI  YSKCG +  A + F    +   V W 
Sbjct: 414 SDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWN 473

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           S++  YA HG ++   ++F +ML H V  D + F+ +L+A SHGGLV EG    N M + 
Sbjct: 474 SMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETR 533

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I    EHY C  DL GR G L +A +L+ SMP +P +      +GAC++HG++ LA  
Sbjct: 534 YKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASD 593

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
            A  L   EP +   Y L+S++Y+    W D A ++K+M++    KVPG SWIE+  E+H
Sbjct: 594 VASHLFVAEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVH 653

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDK 654
           +F + DRSHP+   ++ ML  +  + +    SG   +L K
Sbjct: 654 SFNADDRSHPRMDEIFDMLRMLLQVAQRFCSSGDEEILMK 693



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 209/405 (51%), Gaps = 18/405 (4%)

Query: 102 NQVLHVYVKC---KAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLD-- 156
           NQ+L  Y             ++FDE+   + V+WN+L++  +  G +   +  R+L D  
Sbjct: 30  NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAW--RLLKDMH 87

Query: 157 --NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
              +        S LR+   A   E+G +L SF +K G   N F +SAL+D+Y KCG + 
Sbjct: 88  ARGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLS 147

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           DARRVFD +  R+ V WN +++ YA +     A+ +F  M+   +  D  TF++L+ +  
Sbjct: 148 DARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVE 207

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
                 L +Q+HG + K    L ++V  + +  Y++ G   D+ R+FDG+ +++++SWN+
Sbjct: 208 GPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNS 267

Query: 335 MVVGFGQNGDGREAVK-LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ---VHAYA 390
           M+  +  +G   EA++  +R M +    PD  +  S++S C      C+ RQ   +H+  
Sbjct: 268 MLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEH--GCDDRQGRSIHSLV 325

Query: 391 IKNGVQAFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           +K G++    + NA+I  Y++      +  A +CF S+   D V+W S++  Y+ HGLS 
Sbjct: 326 VKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSS 385

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +++  F  M +  V  D  A    L +CS   ++  G +  +L+I
Sbjct: 386 DALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVI 430



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL+  +    L+ G+Q+HS +++ G  +   + + ++ +Y KC    D  K F+E   
Sbjct: 407 SAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADK 466

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR- 183
            + V WN+++ G    G    VT  F  ML   V LDH+TF +LL A      ++ G   
Sbjct: 467 GSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEI 526

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV 235
           L+S   +    L     +  VDLYG+ G ++ A+ + + +  + D ++W  ++
Sbjct: 527 LNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLL 579


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/540 (36%), Positives = 304/540 (56%), Gaps = 14/540 (2%)

Query: 106 HVYVKCKAFDDMEK----------LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRM 153
           HV V C   D   K          +FD+M+ +N+VTW  +I+     G   +    F R+
Sbjct: 180 HVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRL 239

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           L+     D  T  SLL ACV+ +   +G++LHS++++ G   + FV   LVD+Y K   V
Sbjct: 240 LVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAV 299

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           E++R++F+ +L  +++ W  ++S Y  +     AI +F  M    +  + FTFSS++ +C
Sbjct: 300 ENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKAC 359

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
            +L    +G+Q+HG  IK        V  SL++MYA++G ++ A + F+ +  KN++S+N
Sbjct: 360 ASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYN 419

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           T      +  D  E+     ++          T A +LS    +    +  Q+HA  +K+
Sbjct: 420 TAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKS 477

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G    L I NALI+ YSKCG+   ALQ F  +   +++TWTSII  +A HG + +++E+F
Sbjct: 478 GFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELF 537

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
            +ML   V+P+ + ++ VLSACSH GL+ E  ++FN M  ++ I P  EHY C+ DLLGR
Sbjct: 538 YEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGR 597

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            GLL+EA + + SMP +  +     F+G+C+VH +  L + AA+K+LE EP  P  Y L+
Sbjct: 598 SGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILL 657

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SN+YASE  W DVA LRK M+     K  G SWIE+  ++H F   D SHPQA  +Y  L
Sbjct: 658 SNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDEL 717



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 228/437 (52%), Gaps = 21/437 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVR 127
           LK   + G L+ GK LH  ++  GL     L N ++ +Y KC  +++   +F  M    R
Sbjct: 46  LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 128 NIVTWNTLISGIINCGGNVTPYFRRMLL---------DNVRLDHITFNSLLRACVQADDI 178
           ++V+W    S II+C  N +   R +L          + +  +   F +LLR+C      
Sbjct: 106 DLVSW----SAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFF 161

Query: 179 EVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGF-VEDARRVFDEVLCRDLVLWNVMVS 236
             G  + +F+LK G F  +  V  AL+D++ K G  ++ AR VFD++  ++LV W +M++
Sbjct: 162 TTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMIT 221

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y+   L D A+ +F  + +     D FT +SL+++C  L    LG+Q+H  VI+     
Sbjct: 222 RYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLAS 281

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V  +LVDMYAK+  ++++ ++F+ M   NV+SW  ++ G+ Q+   +EA+KL  +ML
Sbjct: 282 DVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNML 341

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            G   P+  T +S+L +C SL      +Q+H   IK G+     + N+LIN Y++ G++ 
Sbjct: 342 HGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTME 401

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDSIAFLEVLSAC 475
            A + F  + E +L+++ +   A A    + +S E F   + H  V      +  +LS  
Sbjct: 402 CARKAFNILFEKNLISYNTAADANA---KALDSDESFNHEVEHTGVGASPFTYACLLSGA 458

Query: 476 SHGGLVSEGLRYFNLMI 492
           +  G + +G +   L++
Sbjct: 459 ACIGTIVKGEQIHALIV 475



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 208/394 (52%), Gaps = 10/394 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    +  F   GKQLHS +++ GL + + +   ++ +Y K  A ++  K+F+ M   N+
Sbjct: 255 LSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314

Query: 130 VTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++W  LISG +           F  ML  +V  +  TF+S+L+AC    D  +G++LH  
Sbjct: 315 MSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQ 374

Query: 188 ILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            +K+G   +NC V ++L+++Y + G +E AR+ F+ +  ++L+ +N      A     D 
Sbjct: 375 TIKLGLSTINC-VGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDE 433

Query: 247 AIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           +   FN  +   G+    FT++ L++    +G+   G QIH L++K  F  ++ +  +L+
Sbjct: 434 S---FNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALI 490

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MY+K GN + A +VF+ M  +NV++W +++ GF ++G   +A++L  +ML+    P+EV
Sbjct: 491 SMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEV 550

Query: 366 TLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           T  ++LS+C  + +  E  +  ++    + +   +     +++   + G +  A++   S
Sbjct: 551 TYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINS 610

Query: 425 VK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           +  + D + W + +G+   H  +K      +K+L
Sbjct: 611 MPFDADALVWRTFLGSCRVHRNTKLGEHAAKKIL 644



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 182/341 (53%), Gaps = 20/341 (5%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LC 225
           LL+AC+++ ++E+G+ LH  ++  G  L+  + ++L+ LY KCG  E+A  +F  +    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG----DYFTFSSLVNSCGTLGSSKL 281
           RDLV W+ ++SC+A N +   A+  F L  L+  +     + + F++L+ SC        
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTF-LHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 282 GRQIHGLVIKQS-FDLDVLVATSLVDMYAKNG-NIDDACRVFDGMTAKNVVSWNTMVVGF 339
           G  I   ++K   FD  V V  +L+DM+ K G +I  A  VFD M  KN+V+W  M+  +
Sbjct: 164 GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRY 223

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q G   +AV L   +L   + PD+ TL S+LS+C  L      +Q+H++ I++G+ + +
Sbjct: 224 SQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +   L++ Y+K  ++  + + F ++   ++++WT++I  Y      +E+I++F  ML  
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 460 AVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFN 489
            V P+   F  VL AC+           HG  +  GL   N
Sbjct: 344 HVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTIN 384



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 129/273 (47%), Gaps = 2/273 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  A       GKQLH   +KLGL     + N ++++Y +    +   K F+ + 
Sbjct: 352 FSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILF 411

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            +N++++NT          +   +   +    V     T+  LL        I  G ++H
Sbjct: 412 EKNLISYNTAADANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIH 471

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + I+K GFG N  +++AL+ +Y KCG  E A +VF+++  R+++ W  ++S +A +    
Sbjct: 472 ALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFAT 531

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSL 304
            A+ +F  M   G+K +  T+ +++++C  +G   +  +  + +    S    +     +
Sbjct: 532 KALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACM 591

Query: 305 VDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMV 336
           VD+  ++G + +A    + M    + + W T +
Sbjct: 592 VDLLGRSGLLLEAIEFINSMPFDADALVWRTFL 624



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 7/216 (3%)

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT- 325
           S L+ +C   G+ +LG+ +H  +I     LD ++  SL+ +Y+K G+ ++A  +F  M  
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGH 102

Query: 326 -AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS---FCPDEVTLASILSSCGSLSISC 381
             +++VSW+ ++  F  N     A+     MLQ S     P+E    ++L SC +     
Sbjct: 103 HKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 382 ETRQVHAYAIKNG-VQAFLSIENALINAYSKCG-SIAGALQCFGSVKEPDLVTWTSIIGA 439
               + A+ +K G   + + +  ALI+ ++K G  I  A   F  ++  +LVTWT +I  
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITR 222

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           Y+  GL  +++++F ++L     PD      +LSAC
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC 258



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 124/306 (40%), Gaps = 38/306 (12%)

Query: 28  QNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHS 87
           +N  +  T A  + +++ S +  N    H    ++   Y+  L  +A  G + +G+Q+H+
Sbjct: 413 KNLISYNTAADANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHA 472

Query: 88  HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GN 145
            I+K G    L + N ++ +Y KC   +   ++F++M  RN++TW ++ISG    G    
Sbjct: 473 LIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATK 532

Query: 146 VTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-EVGRRLHSFILKVGFGLNCFVSSALV 204
               F  ML   V+ + +T+ ++L AC     I E  +  +S              + +V
Sbjct: 533 ALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMV 592

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           DL G+ G + +                               AI   N M  +    D  
Sbjct: 593 DLLGRSGLLLE-------------------------------AIEFINSMPFD---ADAL 618

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
            + + + SC    ++KLG      ++++    D      L ++YA  G  DD   +   M
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILERE-PHDPATYILLSNLYASEGRWDDVAALRKSM 677

Query: 325 TAKNVV 330
             K ++
Sbjct: 678 KQKKLI 683


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 317/562 (56%), Gaps = 25/562 (4%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +GK +H +++KLG        N ++ +Y K     D   +F++++  +IV+WN +I+G +
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                            +   H     LL         ++ R+LHS ++K+    + FVS
Sbjct: 336 -----------------LHEHHEQALELLG--------QMKRQLHSSLMKMDMESDLFVS 370

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
             LVD+Y KC  +EDAR  F+ +  +DL+ WN ++S Y+       A+++F  M  EG+ 
Sbjct: 371 VGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIG 430

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            +  T S+++ S   L    + RQ+HGL +K  F  D+ V  SL+D Y K  +++DA R+
Sbjct: 431 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI 490

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+  T  ++VS+ +M+  + Q G G EA+KL  +M      PD    +S+L++C +LS  
Sbjct: 491 FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAF 550

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            + +Q+H + +K G    +   N+L+N Y+KCGSI  A + F  + E  +V+W+++IG  
Sbjct: 551 EQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGL 610

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG  ++++++F +ML   V P+ I  + VL AC+H GLV+E   YF  M   +   P 
Sbjct: 611 AQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPM 670

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHY C+ DLLGR G + EA +L+  MP E  +   GA +GA ++H  + L + AAE L 
Sbjct: 671 QEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLF 730

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
            LEP K   + L++N+YAS   W +VA +R++MRD+   K PG SWIE+  +++TF+  D
Sbjct: 731 ILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGD 790

Query: 621 RSHPQAVHMYAMLCTVFGLMEE 642
           RSH ++  +YA L  +  LM++
Sbjct: 791 RSHYRSQEIYAKLDELSDLMDK 812



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 224/433 (51%), Gaps = 40/433 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS+ L        L+ G Q+H+HI K GL +  S++N ++++Y KC+ F    KL DE  
Sbjct: 59  YSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESS 118

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W+ LISG      GG     F  M L  V+ +  TF+S+L+AC    D+ +G++
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  ++  GF  + FV++ LV +Y KC    D++R+FDE+  R++V WN + SCY     
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDF 238

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  M L G+K + F+ SS+VN+C  L  S  G+ IHG +IK  +D D   A +
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMYAK G++ DA  VF+ +   ++VSWN ++ G   +    +A++LL  M        
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM-------- 350

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
                               RQ+H+  +K  +++ L +   L++ YSKC  +  A   F 
Sbjct: 351 -------------------KRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN 391

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD---------SIAFLEVLSA 474
            + E DL+ W +II  Y+ +    E++ +F +M    +  +         S A L+V+  
Sbjct: 392 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHV 451

Query: 475 CS--HGGLVSEGL 485
           C   HG  V  G 
Sbjct: 452 CRQVHGLSVKSGF 464



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 209/386 (54%), Gaps = 11/386 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  + QAL++       Q  +QLHS +MK+ + + L +   ++ +Y KC   +D    F+
Sbjct: 337 HEHHEQALELLG-----QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN 391

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +  ++++ WN +ISG      ++     F  M  + +  +  T +++L++      + V
Sbjct: 392 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHV 451

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
            R++H   +K GF  + +V ++L+D YGKC  VEDA R+F+E    DLV +  M++ YA 
Sbjct: 452 CRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQ 511

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
              G+ A+ +F  M+   +K D F  SSL+N+C  L + + G+Q+H  ++K  F LD+  
Sbjct: 512 YGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFA 571

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             SLV+MYAK G+IDDA R F  +T + +VSW+ M+ G  Q+G GR+A++L   ML+   
Sbjct: 572 GNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENALINAYSKCGSIAGA 418
            P+ +TL S+L +C    +  E + ++  +++   G +        +I+   + G I  A
Sbjct: 632 SPNHITLVSVLGACNHAGLVTEAK-LYFESMEELFGFKPMQEHYACMIDLLGRAGKINEA 690

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFH 443
           ++    +  E +   W +++GA   H
Sbjct: 691 VELVNKMPFEANASVWGALLGAARIH 716



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 170/294 (57%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           ++++ LL  C     +  G ++H+ I K G   +  + + L++LY KC     AR++ DE
Sbjct: 57  VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDE 116

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
               DLV W+ ++S YA N LG GA+  F+ M L G+K + FTFSS++ +C  +   ++G
Sbjct: 117 SSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIG 176

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           +Q+HG+V+   F+ DV VA +LV MYAK     D+ R+FD +  +NVVSWN +   + Q 
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQX 236

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
               EAV L  +M+     P+E +L+S++++C  L  S   + +H Y IK G        
Sbjct: 237 DFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSA 296

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           NAL++ Y+K G +A A+  F  +K+PD+V+W ++I     H   ++++E+  +M
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 26/310 (8%)

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           A+ NL+          ++S L++ C T  S + G QIH  + K     D  +   L+++Y
Sbjct: 42  AILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY 101

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTL 367
           +K      A ++ D  +  ++VSW+ ++ G+ QNG G  A+    +M L G  C +E T 
Sbjct: 102 SKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKC-NEFTF 160

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +S+L +C  +      +QVH   + +G +  + + N L+  Y+KC     + + F  + E
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS----------- 476
            ++V+W ++   Y       E++ +F +M+   ++P+  +   +++AC+           
Sbjct: 221 RNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           HG L+  G  +            D      L D+  +VG L +A  +   +  +P   + 
Sbjct: 281 HGYLIKLGYDW------------DPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSW 327

Query: 537 GAFIGACKVH 546
            A I  C +H
Sbjct: 328 NAVIAGCVLH 337



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%)

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q  +  +   +L  + +G+F P  V+ + +LS C +        Q+HA+  K+G+    S
Sbjct: 33  QFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I N LIN YSKC     A +      EPDLV+W+++I  YA +GL   ++  F +M    
Sbjct: 93  IRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG 152

Query: 461 VRPDSIAFLEVLSACS 476
           V+ +   F  VL ACS
Sbjct: 153 VKCNEFTFSSVLKACS 168


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/482 (37%), Positives = 286/482 (59%), Gaps = 1/482 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + SLL++C+    I+ G++LH+ +   GFG +  +++ LV+LY  C  +  AR +FD + 
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
             ++ LWNV++  YA N   + A+ ++  M   G+  D FTF  ++ +C  L + + GR+
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH  V++  ++ DV V  +L+DMYAK G +  A  VFD +  ++ V WN+M+  + QNG 
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
               + L  +M+     P E TL + +S+    +   + R++H  + +   ++   ++ A
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTA 317

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+KCGS+  A   F  +    +V+W ++I  YA HG + E++++FE+M +   +PD
Sbjct: 318 LVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPD 376

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I F+ VLSACSHGGL+ EG  +F  MI DY I P  +HYTC+ DLLG  G L EAY+L+
Sbjct: 377 HITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLI 436

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             M + P S   GA + +CK+H ++ L + A E+L+ELEP    NY ++SN+YA    W 
Sbjct: 437 MQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWE 496

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
            VA+LRK+M D    K   CSWIE+  ++H F+S D SHP +  +Y+ L  V GLM+E  
Sbjct: 497 GVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAG 556

Query: 645 VS 646
            S
Sbjct: 557 YS 558



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 238/520 (45%), Gaps = 53/520 (10%)

Query: 13  VHFKRPL----------SYLTPAL-------YQNQTTTIT-------NAQKHDRSVLSSQ 48
           +HFKR L          S L P         YQ+   + T       N Q H +++ S  
Sbjct: 3   LHFKRKLKRPSPCSALSSLLKPTFFASLSLQYQSPNPSFTSSAPQFDNNQTHLKAIPSC- 61

Query: 49  LRNSGTIHEST--HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLH 106
              S    EST     +S Y+  L+       ++ GKQLH+ +   G      +  ++++
Sbjct: 62  ---SNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVN 118

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY------FRRMLLDNVRL 160
           +Y  C +      LFD +   NI  WN LI G    G    PY      + +M    +  
Sbjct: 119 LYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNG----PYEAAVQLYYQMFDYGLVP 174

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D+ TF  +L+AC     IE GR +H  +++ G+  + FV +AL+D+Y KCG V  AR VF
Sbjct: 175 DNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVF 234

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D++L RD VLWN M++ Y+ N   D  +++ + M L G++    T  + +++     +  
Sbjct: 235 DKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALP 294

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR++HGL  +Q F+    V T+LVDMYAK G++  A  +F+ +  K VVSWN M+ G+ 
Sbjct: 295 QGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYA 354

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGV 395
            +G   EA+ L  +M + +  PD +T   +LS+C    +  E        +  Y I   V
Sbjct: 355 MHGHATEALDLFEEMNRVAK-PDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTV 413

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFE 454
           Q +      +++     G +  A      +K  PD   W +++ +   H   +      E
Sbjct: 414 QHY----TCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALE 469

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +++   + PD      +LS         EG+     +++D
Sbjct: 470 RLIE--LEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTD 507



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 2/285 (0%)

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           Y  ++SL+ SC    + K G+Q+H  V    F  D ++AT LV++Y    ++  A  +FD
Sbjct: 75  YSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFD 134

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +   N+  WN ++ G+  NG    AV+L   M      PD  T   +L +C +LS    
Sbjct: 135 RIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEH 194

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            R++H + ++ G +  + +  ALI+ Y+KCG +  A + F  +   D V W S++ AY+ 
Sbjct: 195 GREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQ 254

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +G     + +  +M+   +RP     +  +SA +    + +G     L         D  
Sbjct: 255 NGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV 314

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             T L D+  + G +  A +L   + ++ R  +  A I    +HG
Sbjct: 315 K-TALVDMYAKCGSVRVARNLFERLGVK-RVVSWNAMITGYAMHG 357


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/481 (37%), Positives = 296/481 (61%), Gaps = 2/481 (0%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M +  + ++   ++S+L  C+    I  G+R+H+ ++K  +    ++ + L+ LY KC  
Sbjct: 468 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 527

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           + DARRV DE+  R++V W  M+S Y+       A+ +F  M + G   + FTF++++ S
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C +    +LGRQIH LVIK SF+  + V +SL+DMYAK G I +A RVFDG+  ++VVS 
Sbjct: 588 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 647

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             ++ G+ Q G   EA+ L R + +     + VT AS+L++   L+     RQVH++ ++
Sbjct: 648 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 707

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
             +  ++ ++N+LI+ YSKCGS+  + + F S+ E  +++W +++  Y+ HGL +E++E+
Sbjct: 708 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 767

Query: 453 FEKML-SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH-ILPDSEHYTCLTDL 510
           F+ M   + V+PDS+ FL VLS CSHGG+   GL  F  M++      P+ EHY C+ DL
Sbjct: 768 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 827

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
            GR G + EA++ +  MP EP +   G+ +GAC+VH ++ + ++ A +LLE+E     NY
Sbjct: 828 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 887

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            ++SN+YAS   W DV  +R++M++    K PG SWIE+   +HTF +SDRSHP+   ++
Sbjct: 888 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVF 947

Query: 631 A 631
           A
Sbjct: 948 A 948



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 208/371 (56%), Gaps = 6/371 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G+++H+H++K      + L+ +++ +Y KC+   D  ++ DEM  RN+V+W  +ISG
Sbjct: 493 IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 552

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        F  ML+     +  TF ++L +C  +   ++GR++HS ++K  F  +
Sbjct: 553 YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 612

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+L+D+Y K G + +ARRVFD +  RD+V    ++S YA   L + A+ +F  ++ 
Sbjct: 613 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 672

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EGM+ +Y T++S++ +   L +   GRQ+H  V++      V++  SL+DMY+K G++  
Sbjct: 673 EGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTY 732

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCG 375
           + R+FD M  + V+SWN M+VG+ ++G GREAV+L + M  +    PD VT  ++LS C 
Sbjct: 733 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 792

Query: 376 SLSISCETRQVHAYAI--KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVT 432
              +     ++    +  K+G +  +     +++ + + G +  A +    +  EP    
Sbjct: 793 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 852

Query: 433 WTSIIGAYAFH 443
           W S++GA   H
Sbjct: 853 WGSLLGACRVH 863



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 8/237 (3%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E   S +  Y+  L   +    L  G+Q+HSH+++  L   + LQN ++ +Y KC +   
Sbjct: 673 EGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTY 732

Query: 117 MEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDN-VRLDHITFNSLLRACV 173
             ++FD M  R +++WN ++ G      G      F+ M  +N V+ D +TF ++L  C 
Sbjct: 733 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 792

Query: 174 QADDIEVGRRLHSFIL--KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL-VL 230
                + G  +   ++  K GF         +VDL+G+ G VE+A     ++       +
Sbjct: 793 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAI 852

Query: 231 WNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQI 285
           W  ++ +C     +  G      L+ +E    G+Y   S+L  S G     +  R++
Sbjct: 853 WGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 909


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 321/567 (56%), Gaps = 2/567 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L + A  G    G Q+H  ++  G      + N ++ +Y KC    D  KLF+ M 
Sbjct: 249 YTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMP 308

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + VTWN LI+G +  G      P F  M+   V+ D +TF S L + +++  +   + 
Sbjct: 309 QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKE 368

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS+I++     + ++ SAL+D+Y K G VE AR++F +    D+ +   M+S Y L+ L
Sbjct: 369 VHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGL 428

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI  F  +  EGM  +  T +S++ +C  L + KLG+++H  ++K+  +  V V ++
Sbjct: 429 NIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSA 488

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           + DMYAK G +D A   F  M+  + + WN+M+  F QNG    AV L R M       D
Sbjct: 489 ITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFD 548

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            V+L+S LSS  +L      +++H Y I+N   +   + +ALI+ YSKCG +A A   F 
Sbjct: 549 SVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFN 608

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   + V+W SII AY  HG ++E +++F +ML   V PD + FL ++SAC H GLV E
Sbjct: 609 LMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGE 668

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ YF+ M  +Y I    EHY C+ DL GR G L EA+D + SMP  P +   G  +GAC
Sbjct: 669 GIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGAC 728

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++HG++ LAK A+  LLEL+P     Y L+SNV+A    W  V ++R++M++    K+PG
Sbjct: 729 RLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPG 788

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            SWI++ G  H F +++ +HP++V +Y
Sbjct: 789 YSWIDVNGGTHMFSAAEGNHPESVEIY 815



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 218/398 (54%), Gaps = 8/398 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +QQ +Q+H+ I+  G+ +  +L ++VL +YV C    D   LF  + + N + WN +I G
Sbjct: 60  VQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRG 119

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   G       ++ +ML  NV  D  TF  +++AC   +++ +   +H+    +GF ++
Sbjct: 120 LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVD 179

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV SAL+ LY   G++ DARRVFDE+  RD +LWNVM+  Y  +   + A+  F  MR 
Sbjct: 180 LFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRT 239

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
                +  T++ +++ C T G   LG Q+HGLVI   F+ D  VA +LV MY+K GN+ D
Sbjct: 240 SYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFD 299

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS--- 373
           A ++F+ M   + V+WN ++ G+ QNG   EA  L   M+     PD VT AS L S   
Sbjct: 300 ARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILE 359

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            GSL      ++VH+Y +++ V   + +++ALI+ Y K G +  A + F      D+   
Sbjct: 360 SGSLR---HCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVC 416

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           T++I  Y  HGL+ ++I  F  ++   + P+S+    V
Sbjct: 417 TAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASV 454



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 198/374 (52%), Gaps = 2/374 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           +H+    LG    L + + ++ +Y       D  ++FDE+  R+ + WN ++ G +  G 
Sbjct: 167 VHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGD 226

Query: 144 -GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             N    F  M      ++ +T+  +L  C       +G ++H  ++  GF  +  V++ 
Sbjct: 227 FNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANT 286

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           LV +Y KCG + DAR++F+ +   D V WN +++ Y  N   D A  +FN M   G+K D
Sbjct: 287 LVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 346

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF+S + S    GS +  +++H  +++     DV + ++L+D+Y K G+++ A ++F 
Sbjct: 347 SVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQ 406

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
             T  +V     M+ G+  +G   +A+   R ++Q    P+ +T+AS+L +C +L+    
Sbjct: 407 QNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKL 466

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            +++H   +K  ++  +++ +A+ + Y+KCG +  A + F  + E D + W S+I +++ 
Sbjct: 467 GKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQ 526

Query: 443 HGLSKESIEVFEKM 456
           +G  + ++++F +M
Sbjct: 527 NGKPEMAVDLFRQM 540



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 160/321 (49%), Gaps = 2/321 (0%)

Query: 161 DHIT--FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           D++T    SL RAC  A  ++  R++H+ I+  G    C +SS ++ LY  CG + D   
Sbjct: 41  DYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGN 100

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +F  +   + + WN M+    +    D A+  +  M    +  D +TF  ++ +CG L +
Sbjct: 101 LFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNN 160

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
             L   +H       F +D+ V ++L+ +YA NG I DA RVFD +  ++ + WN M+ G
Sbjct: 161 VPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHG 220

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           + ++GD   A+     M       + VT   ILS C +    C   QVH   I +G +  
Sbjct: 221 YVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFD 280

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             + N L+  YSKCG++  A + F ++ + D VTW  +I  Y  +G + E+  +F  M+S
Sbjct: 281 PQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS 340

Query: 459 HAVRPDSIAFLEVLSACSHGG 479
             V+PDS+ F   L +    G
Sbjct: 341 AGVKPDSVTFASFLPSILESG 361



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 8/278 (2%)

Query: 262 DYFT--FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           DY T    SL  +C      +  RQ+H  +I         +++ ++ +Y   G I D   
Sbjct: 41  DYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGN 100

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F G+   N + WN M+ G    G    A+     ML  +  PD+ T   ++ +CG L+ 
Sbjct: 101 LFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNN 160

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                 VH  A   G    L + +ALI  Y+  G I  A + F  + + D + W  ++  
Sbjct: 161 VPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHG 220

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-SDYHIL 498
           Y   G    ++  F  M +     +S+ +  +LS C+  G    G +   L+I S +   
Sbjct: 221 YVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFD 280

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           P   +   L  +  + G L +A  L  +M   P++DT+
Sbjct: 281 PQVAN--TLVAMYSKCGNLFDARKLFNTM---PQTDTV 313


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/547 (36%), Positives = 316/547 (57%), Gaps = 6/547 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ALK   +   L  GK++H  I+K+   + + L   +L +Y KC       K+F+++ 
Sbjct: 157 FSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG-LLDMYAKCGEIKSSYKVFEDIT 215

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN+V W ++I+G +  +        F RM  ++V  +  T+ +L+ AC +   +  G+ 
Sbjct: 216 LRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKW 275

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H  ++K G  L+  + ++L+D+Y KCG + +ARRVF+E    DLV+W  M+  Y  N  
Sbjct: 276 FHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGS 335

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+++F  M   G+K +  T +S+++ CG +G+ +LGR IHGL IK     D  VA +
Sbjct: 336 VNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTNVANA 394

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LV MYAK     DA  VF+  + K++V+WN+++ GF QNG   EA+ L   M   S  P+
Sbjct: 395 LVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPN 454

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE--NALINAYSKCGSIAGALQC 421
            VT+AS+ S+C SL        +HAY++K G  A  S+    AL++ Y+KCG    A   
Sbjct: 455 GVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLI 514

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F +++E + +TW+++IG Y   G +K S+E+FE+ML    +P+   F  VLSACSH G+V
Sbjct: 515 FDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMV 574

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           +EG +YF+ M  DY+  P ++HYTC+ D+L R G L +A D++  MPI+P     GAF+ 
Sbjct: 575 NEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLH 634

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
            C +H    L +   +K+L+L P     Y LVSN+YAS+  W     +R +M+     K+
Sbjct: 635 GCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKI 694

Query: 602 PGCSWIE 608
            G S +E
Sbjct: 695 AGHSIME 701



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 246/490 (50%), Gaps = 11/490 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--II 140
           +Q H  +   GL   +S+  +++ +Y       D   +FD++   +   W  ++    + 
Sbjct: 73  RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLN 132

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           N    V  ++  ++      D I F+  L+AC +  D++ G+++H  I+KV    +  V 
Sbjct: 133 NESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVP-SFDNVVL 191

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + L+D+Y KCG ++ + +VF+++  R++V W  M++ Y  N L +  + +FN MR   + 
Sbjct: 192 TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVL 251

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
           G+ +T+ +LV +C  L +   G+  HG +IK   +L   + TSL+DMY K G+I +A RV
Sbjct: 252 GNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRV 311

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+  +  ++V W  M+VG+  NG   EA+ L + M      P+ VT+AS+LS CG +   
Sbjct: 312 FNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNL 371

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              R +H  +IK G+    ++ NAL++ Y+KC     A   F    E D+V W SII  +
Sbjct: 372 ELGRSIHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGF 430

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           + +G   E++ +F +M + +V P+ +    + SAC+  G ++ G       +    +   
Sbjct: 431 SQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASS 490

Query: 501 SEHY-TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
           S H  T L D   + G   E+  L+     E  + T  A IG    +G  G  K + E  
Sbjct: 491 SVHVGTALLDFYAKCG-DAESARLIFDTIEEKNTITWSAMIGG---YGKQGDTKGSLELF 546

Query: 560 LEL--EPSKP 567
            E+  +  KP
Sbjct: 547 EEMLKKQQKP 556



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 6/309 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL  C   D +   R+ H  +   G   +  +++ LV LYG  G+ +DAR VFD++   D
Sbjct: 62  LLSKCTNIDSL---RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPD 118

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
             LW V++ CY LN      I  ++L+   G   D   FS  + +C  +     G++IH 
Sbjct: 119 FYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHC 178

Query: 288 LVIK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
            ++K  SFD  VL  T L+DMYAK G I  + +VF+ +T +NVV W +M+ G+ +N    
Sbjct: 179 QIVKVPSFDNVVL--TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           E + L   M + S   +E T  +++ +C  L    + +  H   IK+G++    +  +L+
Sbjct: 237 EGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLL 296

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KCG I+ A + F      DLV WT++I  Y  +G   E++ +F+KM    ++P+ +
Sbjct: 297 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCV 356

Query: 467 AFLEVLSAC 475
               VLS C
Sbjct: 357 TIASVLSGC 365


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 320/602 (53%), Gaps = 43/602 (7%)

Query: 80  QQGKQLHSHIMKLGLC-NKLSLQNQVLHVYVKC-KAFDDMEKLFDEMRVRNIVTWNTLIS 137
           +Q KQ+H+ +++ GL  +  S    +    +    + D  +++FD++   N+ TWNTLI 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 138 GIINCGGNVTPY-----FRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRLHSFILKV 191
                  +  P+     F RML  +    D  TF  L++A  + +++  G+  H  ++KV
Sbjct: 109 AY---ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKV 165

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
             G + F+ ++L+  Y KCG +    RVF  +  RD+V WN M++ +      + A+ +F
Sbjct: 166 LLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELF 225

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M  + +K +  T   ++++C      + GR +H  + +      + ++ +++DMY K 
Sbjct: 226 QEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKC 285

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFG------------------------------- 340
           G+++DA R+FD M  K++VSW TM+VG+                                
Sbjct: 286 GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYE 345

Query: 341 QNGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           Q G  +EA++L  ++ L  +  PDEVTL S LS+C  L        +H Y  K G++   
Sbjct: 346 QCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNC 405

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +  +LI+ Y KCG +  AL  F SV+  D+  W+++I   A HG  K++I +F KM   
Sbjct: 406 HLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQED 465

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V+P+++ F  +L ACSH GLV EG  +FN M   Y +LP  +HY C+ D+LGR GLL E
Sbjct: 466 KVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEE 525

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A +L+  MP+ P +   GA +GAC +H ++ LA+ A  +L+ELEP     Y L+SN+YA 
Sbjct: 526 AVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAK 585

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W  V+ LRK+MRD    K PGCS IE+ G +H F+  D SHP A  +YA L  +   
Sbjct: 586 AGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVAR 645

Query: 640 ME 641
           +E
Sbjct: 646 LE 647



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 204/430 (47%), Gaps = 45/430 (10%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +H+S      F +   +K +++   L  GK  H  ++K+ L + + + N ++H Y KC  
Sbjct: 127 LHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGE 186

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
                ++F  +  R++V+WN++I+  +   C       F+ M   NV+ + IT   +L A
Sbjct: 187 LGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSA 246

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C +  D E GR +HS+I +   G +  +S+A++D+Y KCG VEDA+R+FD++  +D+V W
Sbjct: 247 CAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSW 306

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGM-------------------------------- 259
             M+  YA     D A  +F+ M  + +                                
Sbjct: 307 TTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTA 366

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K D  T  S +++C  LG+  LG  IH  + KQ   L+  + TSL+DMY K G++  A  
Sbjct: 367 KPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALM 426

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  +  K+V  W+ M+ G   +G G++A+ L   M +    P+ VT  +IL +C  + +
Sbjct: 427 VFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGL 486

Query: 380 SCETRQVH-----AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTW 433
             E R         Y +  GV+ +      +++   + G +  A++    +   P    W
Sbjct: 487 VEEGRTFFNQMELVYGVLPGVKHY----ACMVDILGRAGLLEEAVELIEKMPMAPAASVW 542

Query: 434 TSIIGAYAFH 443
            +++GA   H
Sbjct: 543 GALLGACTIH 552



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G +  G  +H +I K G+     L   ++ +Y KC        +F  +  +++
Sbjct: 377 LSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDV 436

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
             W+ +I+G+     G +    F +M  D V+ + +TF ++L AC     +E GR   + 
Sbjct: 437 FVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN- 495

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCL 243
            +++ +G+   V   + +VD+ G+ G +E+A  + +++ +     +W  ++ +C     +
Sbjct: 496 QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENV 555

Query: 244 GDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTL----GSSKLGRQI 285
                A   L+ LE G  G Y   S++    G      G  KL R +
Sbjct: 556 VLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDV 602


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/584 (33%), Positives = 323/584 (55%), Gaps = 6/584 (1%)

Query: 66   YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
            YS  L   A   +L  G QLHS I+K    + L + N ++ +Y K  A +D  + F+ +R
Sbjct: 431  YSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIR 490

Query: 126  VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             R+ V+WN +I G +     V  +  FRRM L  +  D ++  S+L AC     +E G++
Sbjct: 491  NRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQ 550

Query: 184  LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            +H   +K G     +  S+L+D+Y KCG ++ A ++   +  R +V  N +++ YA   L
Sbjct: 551  VHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINL 610

Query: 244  GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLVAT 302
             + A+ +F  M +EG+     TF+SL+++C       LGRQIH L++K    LD   +  
Sbjct: 611  -EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGV 669

Query: 303  SLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            SL+ MY  +    DA  +F   +  K+ V W  M+ G  QN     A++L ++M   +  
Sbjct: 670  SLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVL 729

Query: 362  PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            PD+ T  S L +C  +S   +  + H+     G  +     +AL++ Y+KCG +  ++Q 
Sbjct: 730  PDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQV 789

Query: 422  FGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  + ++ D+++W S+I  +A +G +++++ VF++M    V PD + FL VL+ACSH G 
Sbjct: 790  FKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGR 849

Query: 481  VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
            VSEG   F++M++ Y + P ++H  C+ DLLGR G L EA + +  +  EP +      +
Sbjct: 850  VSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATML 909

Query: 541  GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            GAC++HG     + AAEKL+ELEP     Y L+SN+YA+   W +V  LR+ MR+    K
Sbjct: 910  GACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKK 969

Query: 601  VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
            +PGCSWI +  E + FV+ D+SH  A  + A+L  +  LM EN+
Sbjct: 970  LPGCSWIVVGQETNMFVAGDKSHHSASEIDAILKDLTPLMREND 1013



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/420 (32%), Positives = 226/420 (53%), Gaps = 3/420 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K G  ++  ++   + K+G          V++ YV     D+   LF  M  RN+V WN 
Sbjct: 238 KVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNL 297

Query: 135 LISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG    G  V    +F+ M    ++    T  S+L A      ++ G  +H+  LK G
Sbjct: 298 MISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQG 357

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N +V S+LV +Y KCG +E A++VFD +  +++VLWN M+  Y  N   +  + +F 
Sbjct: 358 LHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFF 417

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+  G   D FT+SS++++C  L    LG Q+H ++IK  F  ++ V  +LVDMYAK+G
Sbjct: 418 NMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSG 477

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            ++DA + F+ +  ++ VSWN ++VG+ Q  D  EA  L R M      PDEV+LASILS
Sbjct: 478 ALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILS 537

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C S+    + +QVH  ++K G +  L   ++LI+ Y+KCG+I  A +    + E  +V+
Sbjct: 538 ACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVS 597

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             ++I  YA   L ++++ +F  ML   +    I F  +L AC     ++ G +  +L++
Sbjct: 598 MNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLIL 656



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 220/465 (47%), Gaps = 43/465 (9%)

Query: 18  PLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRN---SGTIHESTH-SAHSFYSQALKVS 73
           P S L    +Q   + I N   H    L  ++        + +S     HS + +  +  
Sbjct: 12  PSSNLHSFHHQLTFSAIPNGSNHPSHTLKPRIYTHILQNCLQKSKQVKTHSLFDEIPQRL 71

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           ++F      K +H+  +KLG  +K  L N ++ +Y KC   D  E+ F ++  ++I+ WN
Sbjct: 72  SQFS--TTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWN 129

Query: 134 TLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           +++S     G    V  YF  +    V  +  TF  +L +C + + ++ GR++H  ++K+
Sbjct: 130 SILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKM 189

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           GF    +   AL+ +Y KC F+ DAR +FD  +  D V W  M+  Y    L + A+ VF
Sbjct: 190 GFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVF 249

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G + D   F +++N+                                   Y   
Sbjct: 250 QEMEKVGQEPDQVAFVTVINA-----------------------------------YVDL 274

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +D+A  +F  M  +NVV+WN M+ G  + G G EA++  ++M +        TL S+L
Sbjct: 275 GRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVL 334

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           S+  SL+       VHA A+K G+ + + + ++L++ Y+KCG +  A + F ++ E ++V
Sbjct: 335 SAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVV 394

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            W +++G Y  +G + E +E+F  M S    PD   +  +LSAC+
Sbjct: 395 LWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACA 439



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 35/302 (11%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  LK+GF     + + +VDLY KC  V+ A R F ++  +D++ WN ++S ++    
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGF 140

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               +  F L+   G+  + FTF+ +++SC  L   K GRQ+H  V+K  F+       +
Sbjct: 141 PHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGA 200

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK   + DA  +FDG    + VSW +M+ G+ + G   EAVK+ ++M +    PD
Sbjct: 201 LIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPD 260

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           +V                               AF+++    INAY   G +  A   F 
Sbjct: 261 QV-------------------------------AFVTV----INAYVDLGRLDNASDLFS 285

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   ++V W  +I  +A  G   E+IE F+ M    ++        VLSA +    +  
Sbjct: 286 RMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDF 345

Query: 484 GL 485
           GL
Sbjct: 346 GL 347



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 16/302 (5%)

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           S   + IH   +K  F    ++   +VD+YAK  ++D A R F  +  K++++WN+++  
Sbjct: 75  STTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSM 134

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             + G     VK    +      P+E T A +LSSC  L +    RQVH   +K G ++ 
Sbjct: 135 HSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESI 194

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
              E ALI  Y+KC  +  A   F    E D V+WTS+IG Y   GL +E+++VF++M  
Sbjct: 195 SYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEK 254

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
               PD +AF+ V++A    G +      F+ M +   +      +  +     + G  V
Sbjct: 255 VGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVA-----WNLMISGHAKGGYGV 309

Query: 519 EAYDLLASMP---IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
           EA +   +M    I+    TLG+ + A        +A  AA     L  ++ +   L SN
Sbjct: 310 EAIEFFQNMRKAGIKSTRSTLGSVLSA--------IASLAALDFGLLVHAEALKQGLHSN 361

Query: 576 VY 577
           VY
Sbjct: 362 VY 363


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/570 (33%), Positives = 336/570 (58%), Gaps = 5/570 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           ALK  A    L+ GK +H    K   + + + + + ++ +Y KC    +  K+F+E +  
Sbjct: 109 ALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRP 168

Query: 128 NIVTWNTLISGII--NCGGNVTPYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           + V W ++++G    N        F +M ++D V LD +T  S++ AC Q  +++ G  +
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCV 228

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  +++  F  +  + ++L++LY K G  + A  +F ++  +D++ W+ M++CYA N   
Sbjct: 229 HGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAA 288

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ +F+ M  +  + +  T  S + +C    + + G++IH + + + F+LD  V+T+L
Sbjct: 289 NEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTAL 348

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY K    D+A  +F  +  K+VVSW  ++ G+ QNG   +++ + R+ML     PD 
Sbjct: 349 IDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDA 408

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           V +  IL++   L I  +   +H Y +++G  + + +  +LI  YSKCGS+  A++ F  
Sbjct: 409 VAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKG 468

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSE 483
           +   D+V W+S+I AY  HG   E++E+F++M+ ++ VRP+++ FL +LSACSH GLV E
Sbjct: 469 MIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEE 528

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL+ F+ M+ DY + PDSEH+  + DLLGR+G L +A D++  MPI       GA +GAC
Sbjct: 529 GLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGAC 588

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H +I + + AA+ L  L+PS    Y L+SN+YA +  W +VA LR  +++    K+ G
Sbjct: 589 RIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFG 648

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            S +E+ G +H+F++SDR HP +  +Y +L
Sbjct: 649 QSMVEVRGGVHSFLASDRFHPDSQKIYELL 678



 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 254/452 (56%)

Query: 182  RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++ H+ I   G   +  + +    +Y     ++ A  VF+++      LWNVM+  +A +
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 242  CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                 ++ +++ M  +G+K D F F   + SC  L   + G+ IH  ++      D+ V 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 302  TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
             +LVDMYAK G+I+ A  VFD M  +++VSW +M+ G+  NG   E +     M      
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 362  PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            P+ V++ S+L +CG+L    +    H+Y I+ G +  + +  A+++ YSKCGS+  A   
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 422  FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            F      DLV W+++I +Y  HG  +++I++F++M+   VRP  + F  VLSACSH GL+
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLL 1036

Query: 482  SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
             EG  YF LM  ++ I     +Y C+ DLLGR G L EA DL+ +MP+EP +   G+ +G
Sbjct: 1037 EEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLG 1096

Query: 542  ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
            AC++H ++ LA+  A+ L  L+P     + L+SN+YA++  W +V ++RKMM     +K+
Sbjct: 1097 ACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKI 1156

Query: 602  PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             G S +E   ++H F   DRSHPQ   +YA L
Sbjct: 1157 QGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKL 1188



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 257/508 (50%), Gaps = 31/508 (6%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           QLHS + K G+ +      ++  +Y KC +     K+FDE    N+  WN+         
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNS--------- 72

Query: 144 GNVTPYFR-RMLLDNVRL------------DHITFNSLLRACVQADDIEVGRRLHSFILK 190
             +  Y R +   + +RL            D+ T    L+AC     +E+G+ +H F  K
Sbjct: 73  -TLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKK 131

Query: 191 VG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
               G + FV SALV+LY KCG + +A +VF+E    D VLW  MV+ Y  N   + A+A
Sbjct: 132 NDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALA 191

Query: 250 VFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           +F+ M  ++ +  D  T  S+V++C  L + K G  +HGLVI++ FD D+ +  SL+++Y
Sbjct: 192 LFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLY 251

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK G    A  +F  M  K+V+SW+TM+  +  N    EA+ L  +M++  F P+ VT+ 
Sbjct: 252 AKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVV 311

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S L +C       E +++H  A+  G +   S+  ALI+ Y KC     A+  F  + + 
Sbjct: 312 SALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKK 371

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D+V+W +++  YA +G++ +S+ VF  MLS  ++PD++A +++L+A S  G+  + L   
Sbjct: 372 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH 431

Query: 489 NLMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
             ++       +S  +    L +L  + G L +A  L   M +        + I A  +H
Sbjct: 432 GYVVRSGF---NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVV-IWSSMIAAYGIH 487

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G  G A    +++++    +P N   +S
Sbjct: 488 GRGGEALEIFDQMVKNSTVRPNNVTFLS 515



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 198/388 (51%), Gaps = 8/388 (2%)

Query: 83   KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
            K+ H+ I   GL     +  +   +YV     D    +F+++       WN +I G    
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 143  GGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            G  ++    + +M+   ++ D   F   L++C    D++ G+ +H  ++  G   + FV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 201  SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
            +ALVD+Y KCG +E AR VFD++  RDLV W  M+S YA N      +  F+LMR  G+ 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 261  GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
             +  +  S++ +CG LG+ + G   H  VI+  F+ D+LVAT+++DMY+K G++D A  +
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 321  FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
            FD    K++V W+ M+  +G +G GR+A+ L   M++    P  VT   +LS+C    + 
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLL 1036

Query: 381  CETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIG 438
             E +       +  V A  LS    +++   + G ++ A+    ++  EPD   W S++G
Sbjct: 1037 EEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLG 1096

Query: 439  AYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            A   H     ++++ EK+  H    D +
Sbjct: 1097 ACRIH----NNLDLAEKIADHLFHLDPV 1120



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 176/364 (48%), Gaps = 7/364 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           L +AC     +    +LHS + K G   + F ++ L  LY KC  ++ AR+VFDE    +
Sbjct: 10  LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           + LWN  +  Y      +  + +F+LM    G   D FT    + +C  L   +LG+ IH
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 287 GLVIKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           G   K      D+ V ++LV++Y+K G + +A +VF+     + V W +MV G+ QN D 
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 346 REAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            EA+ L   M +      D VTL S++S+C  L        VH   I+      L + N+
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS 246

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L+N Y+K G    A   F  + E D+++W+++I  YA +  + E++ +F +M+     P+
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPN 306

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           S+  +  L AC+    + EG +   + +     L D    T L D+  +     EA DL 
Sbjct: 307 SVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL-DFSVSTALIDMYMKCSCPDEAVDLF 365

Query: 525 ASMP 528
             +P
Sbjct: 366 QRLP 369



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 166/339 (48%), Gaps = 12/339 (3%)

Query: 2    LSRCPAPPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHS 61
             +R  A  I       P S+L   + +   T        D   LSS    S  + +    
Sbjct: 765  FNRIDAASIVFEDIPNPCSFLWNVMIRGFAT--------DGRFLSSLELYSKMMEKGLKP 816

Query: 62   AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
                +  ALK  A    LQ+GK +H H++  G  N L +   ++ +Y KC   +    +F
Sbjct: 817  DKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVF 876

Query: 122  DEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
            D+M VR++V+W ++ISG  + G N     +F  M    V  + ++  S+L AC     + 
Sbjct: 877  DKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALR 936

Query: 180  VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
             G   HS++++ GF  +  V++A++D+Y KCG ++ AR +FDE   +DLV W+ M++ Y 
Sbjct: 937  KGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYG 996

Query: 240  LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            ++  G  AI +F+ M   G++  + TF+ ++++C   G  + G+    L+ ++      L
Sbjct: 997  IHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKL 1056

Query: 300  VATS-LVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMV 336
               + +VD+  + G + +A  + + M  +   S W +++
Sbjct: 1057 SNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 325/580 (56%), Gaps = 43/580 (7%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHI----TFNSLLRACVQA 175
           +F+ ++  N++ WNT++ G  +    V+     M +  V L H+    +F  LL++C ++
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSAL--EMYVRMVSLGHLPNSYSFPFLLKSCAKS 77

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-------------- 221
              E GR++H+ +LK+G GL+ +V ++L+ +Y + G +EDAR+VFD              
Sbjct: 78  KAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALI 137

Query: 222 -----------------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
                            E+  RD+V WN M++ Y  N   + A+ +F  M    ++ D  
Sbjct: 138 TGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEG 197

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIK----QSFDLDVLVATSLVDMYAKNGNIDDACRV 320
           T  S+V++C   GS +LGRQ+H  V        F   + +  +L+D+Y+K G+++ A  +
Sbjct: 198 TLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGL 257

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+G++ K+VVSWNT++ G+      +EA+ L ++ML+   CP++VTL S+L +C  L   
Sbjct: 258 FEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAI 317

Query: 381 CETRQVHAYAIKN--GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              R +H Y  K   GV    S+  +LI+ Y+KCG I  A Q F S+    L +W ++I 
Sbjct: 318 DIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIF 377

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            +A HG +  + ++F +M  + V PD I F+ +LSACSH GL+  G + F  M  DY++ 
Sbjct: 378 GFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLT 437

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY C+ DLLG  GL  EA +++ +MP+EP      + + ACK HG++ LA+  A+K
Sbjct: 438 PKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQK 497

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L+++EP    +Y L+SN+YA+   W DVAR+R ++      KVPGCS IE+   +H F+ 
Sbjct: 498 LIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFII 557

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
            D+ HP+   +Y ML  +   +EE   +   + + +EM+E
Sbjct: 558 GDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEE 597



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 201/416 (48%), Gaps = 41/416 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVY--------------------- 108
           LK  AK    ++G+Q+H+ ++KLG      +   ++ +Y                     
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 109 VKCKA----------FDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
           V C A          F    K+FDE+  R++V+WN +I+G +  G        F+ M+  
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV----GFGLNCFVSSALVDLYGKCGF 212
           NVR D  T  S++ AC Q+  IE+GR++HS++       GF  +  + +AL+DLY KCG 
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           VE A  +F+ + C+D+V WN ++  Y    L   A+ +F  M   G   +  T  S++ +
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPA 310

Query: 273 CGTLGSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
           C  LG+  +GR IH  + K  +    +  + TSL+DMYAK G+I+ A +VF+ M  +++ 
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SWN M+ GF  +G    A  L   M      PD++T   +LS+C    +    RQ+    
Sbjct: 371 SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSM 430

Query: 391 IKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            ++  +   L     +I+     G    A +   ++  EPD V W S++ A   HG
Sbjct: 431 TQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHG 486



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 31/199 (15%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF+ +   N++ WNTM+ G   + D   A+++   M+     P+  +   +L SC  
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 377 LSISCETRQVHA--------------------YAIKNGVQAFLSIEN-----------AL 405
                E RQ+HA                    YA   G++    + +           AL
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I  Y+  G    A + F  + E D+V+W ++I  Y  +G  +E++E+F++M+   VRPD 
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 466 IAFLEVLSACSHGGLVSEG 484
              + V+SAC+  G +  G
Sbjct: 197 GTLVSVVSACAQSGSIELG 215


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 299/558 (53%), Gaps = 5/558 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLIS 137
           +   Q+HS ++   L +   L N +L++Y KC + D    LF       +N+V+W +LI+
Sbjct: 44  KHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLIT 103

Query: 138 GIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
            +           +F  M    V  +H TF+++L AC        G ++HS + K GF  
Sbjct: 104 QLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLA 163

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
             FV SALVD+Y KC  +  A +VF+E+  R+LV WN M+  +  N L D AI  F  + 
Sbjct: 164 EVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLL 223

Query: 256 LEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           LE +   D  +FSS+ ++C   G+ + G+Q+HG+ +K      V +  SL DMY K G  
Sbjct: 224 LENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLF 283

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +D  ++F    A++VV+WN M++ +  N +  +A      M +    PDE + +S+L SC
Sbjct: 284 NDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSC 343

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            +L+   +   +H   I++G    L + ++LI  Y+KCGS+  A Q F   ++ ++V WT
Sbjct: 344 ANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWT 403

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +II A   HG +   +E+FE+ML   ++PD I F+ VLSACSH G V EG  YFN MI  
Sbjct: 404 AIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKV 463

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           + I P  EHY C+ DLL R G L  A   +  MPI+P +   GA + AC+ H ++ + K 
Sbjct: 464 HGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKE 523

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
            A KL +LEP  P NY L+ N+        +   +R+ M      K PGCSWI+I    +
Sbjct: 524 VALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTY 583

Query: 615 TFVSSDRSHPQAVHMYAM 632
            F   D+SH +   +Y M
Sbjct: 584 VFTVHDKSHEKTKEIYEM 601



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 247/509 (48%), Gaps = 57/509 (11%)

Query: 31  TTTITNAQKHDRSVLS----SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLH 86
           T+ IT   +  R   +    + +R SG      +  H  +S  L           G+Q+H
Sbjct: 99  TSLITQLTRFKRPFKALTFFNHMRRSGV-----YPNHYTFSAVLSACTDTTASVHGEQMH 153

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--G 144
           S + K G   ++ + + ++ +Y KC      EK+F+EM VRN+V+WNT+I G +      
Sbjct: 154 SLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYD 213

Query: 145 NVTPYFRRMLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
               +F+ +LL+N+  LD ++F+S+  AC  A ++E G+++H   LK+G     +++++L
Sbjct: 214 QAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSL 273

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
            D+YGKCG   D  ++F     RD+V WN+M+  Y  N   + A   F +MR +G   D 
Sbjct: 274 SDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDE 333

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            ++SS+++SC  L +   G  IH  +I+  F  ++ VA+SL+ MYAK G++ DA ++F+ 
Sbjct: 334 ASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEE 393

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
              +NVV W  ++    Q+G     V+L   ML+    PD +T  S+LS+C         
Sbjct: 394 TEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACS-------- 445

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
              H   ++ G   F    N++I  +                  P    +  I+   +  
Sbjct: 446 ---HTGRVEEGFFYF----NSMIKVHGIY---------------PGHEHYACIVDLLSRA 483

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC-SHGGLV---SEGLRYFNLMISDYHILP 499
           G    +    E M    ++PD+  +  +LSAC +H  L+      L+ F+L        P
Sbjct: 484 GELDRAKRFIELM---PIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLE-------P 533

Query: 500 DSE-HYTCLTDLLGRVGLLVEAYDLLASM 527
           D+  +Y  L ++L R G+L EA ++   M
Sbjct: 534 DNPGNYVLLCNILTRNGMLNEADEVRRKM 562



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           + +SL+N   T   SK   QIH  +I  +      +  +L+++YAK G++D    +F   
Sbjct: 32  SLNSLLNCSRT---SKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSA 88

Query: 325 T--AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
              +KNVVSW +++    +     +A+     M +    P+  T +++LS+C   + S  
Sbjct: 89  PDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVH 148

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             Q+H+   K+G  A + + +AL++ Y+KC  +  A + F  +   +LV+W ++I  +  
Sbjct: 149 GEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQ 208

Query: 443 HGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGG 479
           + L  ++I  F+ +L   +   D ++F  V SAC++ G
Sbjct: 209 NKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAG 246


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 300/539 (55%), Gaps = 5/539 (0%)

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN+V+W  +ISG+            F  M +         F+S +RAC     IE+G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           +++H   LK G G   FV S L D+Y KCG + DA +VF+E+ C+D V W  M+  Y+  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A+  F  M  E +  D     S + +CG L + K GR +H  V+K  F+ D+ V 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
            +L DMY+K G+++ A  VF G+ +  +NVVS+  ++ G+ +     + + +  ++ +  
Sbjct: 181 NALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E T +S++ +C + +   +  Q+HA  +K        + + L++ Y KCG +  A+
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           Q F  + +P  + W S++  +  HGL K++I++FE+M+   V+P++I F+ +L+ CSH G
Sbjct: 300 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EGL YF  M   Y ++P  EHY+C+ DLLGR G L EA + +  MP EP +    +F
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +GAC++HG   + K AAEKL++LEP       L+SN+YA+ER W DV  +R  MRD    
Sbjct: 420 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 479

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           K+PG SW+++  + H F + D SHP+   +Y  L T+   ++        + +  +MD+
Sbjct: 480 KLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDD 538



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 226/448 (50%), Gaps = 29/448 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A++  A  G ++ GKQ+H   +K G+ ++L + + +  +Y KC A  D  K+F+EM 
Sbjct: 44  FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 103

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V+W  +I G    G        F++M+ + V +D     S L AC      + GR 
Sbjct: 104 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 163

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNC 242
           +HS ++K+GF  + FV +AL D+Y K G +E A  VF  +  CR++V +  ++  Y    
Sbjct: 164 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 223

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             +  ++VF  +R +G++ + FTFSSL+ +C    + + G Q+H  V+K +FD D  V++
Sbjct: 224 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            LVDMY K G ++ A + FD +     ++WN++V  FGQ+G G++A+K+   M+     P
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 343

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA------------LINAYS 410
           + +T  S+L+ C            HA  ++ G+  F S++              +I+   
Sbjct: 344 NAITFISLLTGCS-----------HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLG 392

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           + G +  A +    +  EP+   W S +GA   HG  +      EK++   + P +   L
Sbjct: 393 RAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGAL 450

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHI 497
            +LS         E +R   + + D ++
Sbjct: 451 VLLSNIYANERQWEDVRSVRMRMRDGNV 478


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/555 (33%), Positives = 315/555 (56%), Gaps = 11/555 (1%)

Query: 79  LQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L+QG+ LH+ I++  L    + L   ++ +Y +C+  +   K FDEM  + +VTWN LI+
Sbjct: 74  LKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133

Query: 138 GIINCGGN--VTPYFRRML---LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           G    G +      ++ M+    + ++ D ITF+S L AC    DI  GR + +  +  G
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASG 193

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +  +  V +AL+++Y KCG +E AR+VFD +  RD++ WN M+S YA       A+ +F 
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQ 253

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-N 311
            M     K +  TF  L+ +C  L   + GR IH  V +  ++ D+++   L++MY K +
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCS 313

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            ++++A +VF+ +  ++V++WN ++V + Q G  ++A+ + + M   +  P+E+TL+++L
Sbjct: 314 SSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVL 373

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           S+C  L    + + VHA       +A + +EN+L+N Y++CGS+   +  F ++++  LV
Sbjct: 374 SACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLV 433

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W+++I AYA HG S+  +E F ++L   +  D +  +  LSACSHGG++ EG++ F  M
Sbjct: 434 SWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSM 493

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           + D+ + PD  H+ C+ DLL R G L  A +L+  MP  P +    + +  CK+H     
Sbjct: 494 VGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKR 553

Query: 552 AKWAAEKLLELEPS-KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           A   A+KL ELE   +     L+SNVYA    W DV   RK        K PGCS+IEI 
Sbjct: 554 AARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEIN 610

Query: 611 GEIHTFVSSDRSHPQ 625
             +H FV+ D+SHP+
Sbjct: 611 DTVHEFVAGDKSHPE 625



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 230/428 (53%), Gaps = 8/428 (1%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHIT 164
           +Y KC +  D   +F  +   N V+W  +++     G       Y+RRM+L+ +R D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           F   +  C  + D++ G+ LH+ IL+      +  + +AL+ +Y +C  +E AR+ FDE+
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLM---RLEGMKGDYFTFSSLVNSCGTLGSSK 280
             + LV WN +++ Y+ N    GA+ ++  M     EGMK D  TFSS + +C  +G   
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR+I    +   +  D +V  +L++MY+K G+++ A +VFD +  ++V++WNTM+ G+ 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           + G   +A++L + M      P+ VT   +L++C +L    + R +H    ++G ++ L 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 401 IENALINAYSKC-GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           I N L+N Y+KC  S+  A Q F  ++  D++TW  +I AY  +G +K+++++F++M   
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V P+ I    VLSAC+  G   +G +  + +I+      D      L ++  R G L +
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 520 AYDLLASM 527
              + A++
Sbjct: 420 TVGVFAAI 427



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 217/408 (53%), Gaps = 27/408 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL   +  G + QG+++ +  +  G  +   +QN ++++Y KC + +   K+FD ++
Sbjct: 166 FSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK 225

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+++ WNT+ISG    G        F+RM  ++ + + +TF  LL AC   +D+E GR 
Sbjct: 226 NRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRA 285

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +H  + + G+  +  + + L+++Y KC   +E+AR+VF+ +  RD++ WN+++  Y    
Sbjct: 286 IHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYG 345

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F  M+LE +  +  T S+++++C  LG+ + G+ +H L+       DV++  
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL++MY + G++DD   VF  +  K++VSW+T++  + Q+G  R  ++   ++LQ     
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAA 465

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYS 410
           D+VT+ S LS+C            H   +K GVQ+FLS+               +++  S
Sbjct: 466 DDVTMVSTLSACS-----------HGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLS 514

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           + G +  A      +   PD V WTS++     H  +K +  V +K+ 
Sbjct: 515 RAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF 562


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 315/542 (58%), Gaps = 18/542 (3%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR-- 159
           N +++ Y K        ++FDE+   +IV++NTLI+   +  G   P  R  L + VR  
Sbjct: 79  NTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYAD-RGECGPTLR--LFEEVREL 135

Query: 160 ---LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
              LD  T + ++ AC   DD+ + R+LH F++  G      V++A++  Y + GF+ +A
Sbjct: 136 RLGLDGFTLSGVITAC--GDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEA 193

Query: 217 RRVFDEVL---CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           RRVF E+     RD V WN M+     +  G  A+ +F  M   G+K D FT +S++ + 
Sbjct: 194 RRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAF 253

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSW 332
             +     GRQ HG++IK  F  +  V + L+D+Y+K  G++ +  +VF+ +TA ++V W
Sbjct: 254 TCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLW 313

Query: 333 NTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           NTM+ GF    D   + +   R+M +  F PD+ +   + S+C +LS     +QVHA AI
Sbjct: 314 NTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAI 373

Query: 392 KNGVQ-AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           K+ V    +S+ NAL+  YSKCG++  A + F ++ E + V+  S+I  YA HG+  ES+
Sbjct: 374 KSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESL 433

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
            +FE ML   + P+SI F+ VLSAC H G V EG +YFN+M   + I P++EHY+C+ DL
Sbjct: 434 RLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDL 493

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           LGR G L EA  ++ +MP  P S      +GAC+ HG++ LA  AA + L LEP     Y
Sbjct: 494 LGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPY 553

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP--QAVH 628
            ++SN+YAS   W + A ++++MR+    K PGCSWIEI  ++H FV+ D SHP  + +H
Sbjct: 554 VMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIH 613

Query: 629 MY 630
           +Y
Sbjct: 614 VY 615



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 195/420 (46%), Gaps = 39/420 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG------------ 211
           TF +LL+AC+   D+  G+ LH+   K     + ++S+    LY KCG            
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 212 -------------------FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                               +  ARRVFDE+   D+V +N +++ YA        + +F 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            +R   +  D FT S ++ +CG      L RQ+H  V+    D    V  +++  Y++ G
Sbjct: 131 EVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKG 188

Query: 313 NIDDACRVFDGM---TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
            + +A RVF  M     ++ VSWN M+V  GQ+ +G EAV L R+M++     D  T+AS
Sbjct: 189 FLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMAS 248

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-GSIAGALQCFGSVKEP 428
           +L++   +      RQ H   IK+G      + + LI+ YSKC GS+    + F  +  P
Sbjct: 249 VLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAP 308

Query: 429 DLVTWTSIIGAYA-FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           DLV W ++I  ++ +  LS++ +  F +M  +  RPD  +F+ V SACS+    S G + 
Sbjct: 309 DLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQV 368

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             L I              L  +  + G + +A  +  +MP E  + +L + I     HG
Sbjct: 369 HALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNTVSLNSMIAGYAQHG 427



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 6/145 (4%)

Query: 82  GKQLHSHIMKLGLC-NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           GKQ+H+  +K  +  N++S+ N ++ +Y KC    D  ++FD M   N V+ N++I+G  
Sbjct: 365 GKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYA 424

Query: 141 NCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G  V     F  ML  ++  + ITF ++L ACV    +E G++  + ++K  F +   
Sbjct: 425 QHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFN-MMKERFCIEPE 483

Query: 199 VS--SALVDLYGKCGFVEDARRVFD 221
               S ++DL G+ G +++A R+ +
Sbjct: 484 AEHYSCMIDLLGRAGKLKEAERIIE 508


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/542 (36%), Positives = 314/542 (57%), Gaps = 18/542 (3%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR-- 159
           N +++ Y K        ++FDE+   +IV++NTLI+   +  G   P  R  L   VR  
Sbjct: 79  NTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYAD-RGECRPALR--LFAEVREL 135

Query: 160 ---LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
              LD  T + ++ AC   DD+ + R+LH F++  G+     V++A++  Y + GF+ +A
Sbjct: 136 RFGLDGFTLSGVIIAC--GDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEA 193

Query: 217 RRVFDEVL---CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           RRVF E+     RD V WN M+     +  G  A+ +F  M   G+K D FT +S++ + 
Sbjct: 194 RRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAF 253

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSW 332
             +     G Q HG++IK  F  +  V + L+D+Y+K  G + +  +VF+ + A ++V W
Sbjct: 254 TCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLW 313

Query: 333 NTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           NTM+ GF Q  D   + +   R+M    F PD+ +   + S+C +LS     +QVHA AI
Sbjct: 314 NTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAI 373

Query: 392 KNGVQ-AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           K+ +    +S+ NAL+  YSKCG++  A + F ++ E ++V+  S+I  YA HG+  ES+
Sbjct: 374 KSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESL 433

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
            +FE ML   + P++I F+ VLSAC H G V EG +YFN+M   + I P++EHY+C+ DL
Sbjct: 434 RLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDL 493

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           LGR G L EA  ++ +MP  P S      +GAC+ HG++ LA  AA + L+LEP     Y
Sbjct: 494 LGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPY 553

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP--QAVH 628
            ++SN+YAS   W + A ++++MR+    K PGCSWIEI  ++H FV+ D SHP  + +H
Sbjct: 554 VMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIH 613

Query: 629 MY 630
           +Y
Sbjct: 614 VY 615



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 195/420 (46%), Gaps = 39/420 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED-------- 215
           TF +LL+AC+   D+  G+ LH+   K     + ++S+    LY KCG + +        
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 216 -----------------------ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                                  AR+VFDE+   D+V +N +++ YA       A+ +F 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            +R      D FT S ++ +CG      L RQ+H  V+   +D    V  +++  Y++ G
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 313 NIDDACRVFDGM---TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
            +++A RVF  M     ++ VSWN M+V  GQ+ +G EAV+L R+M++     D  T+AS
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-GSIAGALQCFGSVKEP 428
           +L++   +       Q H   IK+G      + + LI+ YSKC G +    + F  +  P
Sbjct: 249 VLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAP 308

Query: 429 DLVTWTSIIGAYA-FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           DLV W ++I  ++ +  LS++ I  F +M  +   PD  +F+ V SACS+    S G + 
Sbjct: 309 DLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQV 368

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             L I              L  +  + G + +A  +  +MP E    +L + I     HG
Sbjct: 369 HALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGYAQHG 427



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 82  GKQLHSHIMKLGLC-NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           GKQ+H+  +K  +  N++S+ N ++ +Y KC    D  ++FD M   N+V+ N++I+G  
Sbjct: 365 GKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYA 424

Query: 141 NCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G  V     F  ML  ++  + ITF ++L ACV    +E G++  + ++K  F +   
Sbjct: 425 QHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFN-MMKERFRIEPE 483

Query: 199 VS--SALVDLYGKCGFVEDARRVFD 221
               S ++DL G+ G +++A R+ +
Sbjct: 484 AEHYSCMIDLLGRAGKLKEAERIIE 508


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/485 (38%), Positives = 292/485 (60%), Gaps = 7/485 (1%)

Query: 154 LLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           L++N  L  D   +N LL+ C     ++ G+ +H+ ++   F  +  + ++++ +Y KCG
Sbjct: 81  LINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG 140

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA---IAVFNLMRLEGMKGDYFTFSS 268
            +E AR+VFDE+  +D+V W  M++ Y+ +     A   + +F  M  +G++ + F  SS
Sbjct: 141 SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSS 200

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           LV  CG LGS   G+QIHG   K  F  +V V +SLVDMYA+ G + ++  VFD + +KN
Sbjct: 201 LVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKN 260

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            VSWN ++ GF + G+G EA+ L   M +  F   E T +++L S  +     + + +HA
Sbjct: 261 EVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHA 320

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           + +K+G +    + N L++ Y+K G+I  A + F  + + D+V+  S++  YA HGL KE
Sbjct: 321 HMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKE 380

Query: 449 SIEVFEK-MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           ++E+FE+ ML   + P+ I FL VL+ACSH GL+ EGL YF LM   Y + P   HYT +
Sbjct: 381 AVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTV 439

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            DL GR GLL +A   +  MPIEP +   GA +GA K+H +  +  +AA+K+LEL+P  P
Sbjct: 440 VDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYP 499

Query: 568 VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
             + L+SN+YAS   W DVA++RK M+D+   K P CSW+EI   +H F ++D SHPQ  
Sbjct: 500 GAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKN 559

Query: 628 HMYAM 632
            +Y M
Sbjct: 560 KVYEM 564



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 236/443 (53%), Gaps = 21/443 (4%)

Query: 22  LTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQ 81
           L P+L  N TT +         VL   L N+G++        + Y++ LK     G L+Q
Sbjct: 64  LRPSLNPNSTTGL--------HVL--DLINNGSLEPD----RTIYNKLLKRCTMLGKLKQ 109

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK +H+H+M     N L ++N +L +Y KC + +   ++FDEM V+++VTW ++I+G   
Sbjct: 110 GKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQ 169

Query: 142 CG-----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            G           F  M+ D +R +    +SL++ C        G+++H    K GF  N
Sbjct: 170 DGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQEN 229

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+LVD+Y +CG + ++R VFDE+  ++ V WN ++S +A    G+ A+ +F  M+ 
Sbjct: 230 VFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQR 289

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG     FT+S+L+ S  T GS + G+ +H  ++K    L   V  +L+ MYAK+GNI D
Sbjct: 290 EGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICD 349

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD-MLQGSFCPDEVTLASILSSCG 375
           A +VFD +   +VVS N+M++G+ Q+G G+EAV+L  + ML     P+++T  S+L++C 
Sbjct: 350 AKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACS 409

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWT 434
              +  E         K G++  LS    +++ + + G +  A      +  EP+   W 
Sbjct: 410 HAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWG 469

Query: 435 SIIGAYAFHGLSKESIEVFEKML 457
           +++GA   H  ++      +K+L
Sbjct: 470 ALLGASKMHKNTEMGAYAAQKVL 492


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 314/557 (56%), Gaps = 11/557 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           KQ+H+ +    L N +   N +L   +  K       +F+++   NI  +N ++ G+   
Sbjct: 50  KQIHAQM----LINSIPKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATT 105

Query: 143 GGN----VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                  V  Y++   L  ++ ++ T+  L  AC     +  G+  H  + K G   + +
Sbjct: 106 WKKYDFCVELYYKLKSL-GLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEY 164

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+ +L+ +Y +CG +  AR+VFDE+  RDLV WN M+S Y+       AI +F  MR EG
Sbjct: 165 VNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            + D  T  S++ +CG LG   LGR + G V+++  +++  + ++L+DMY K G++  A 
Sbjct: 225 FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISAR 284

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           RVFD M  K+VV+WN ++ G+ QNG   EA+ L   M +    PD VT+  +LS+C ++ 
Sbjct: 285 RVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIG 344

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                + V  +A + G+Q  + + +ALI+ Y+KCGS+  A++ F S+   + V+W ++I 
Sbjct: 345 ALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMIS 404

Query: 439 AYAFHGLSKESIEVFEKMLSH--AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           A AFHG ++E++ +F +M      V+P+ I F+ VLSAC H GLV EG + F  M   + 
Sbjct: 405 ALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFG 464

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           ++P  EHY+C+ DL  R GLL EA+DL+  MP +P    LG+ +GAC+   +  + +   
Sbjct: 465 LVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVI 524

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +  LE+E S   NY + S +YA+ R W D A++R +MR     K PGCSWI+I   +H F
Sbjct: 525 QLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEF 584

Query: 617 VSSDRSHPQAVHMYAML 633
            + D  H  ++++Y +L
Sbjct: 585 HAGDSLHNHSMNIYQLL 601



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/419 (32%), Positives = 212/419 (50%), Gaps = 37/419 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GK  H  + K GL     + + ++ +Y +C       K+FDEM  R++V+WN++ISG
Sbjct: 144 LVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISG 203

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        F  M  +    D +T  S+L AC    D+ +GR +  F+L+    +N
Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            ++ SAL+D+YGKCG +  ARRVFD +  +D+V WN +++ YA N   + AI +FN MR 
Sbjct: 264 SYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMRE 323

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G   D  T   ++++C T+G+  LG+ +     ++    DV VA++L+DMYAK G++DD
Sbjct: 324 AGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDD 383

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSSC 374
           A RVF+ M  KN VSWN M+     +G  +EA+ L R M +  G+  P+++T   +LS+C
Sbjct: 384 AVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSAC 443

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
                      VHA  +  G Q F S+  +                 FG V  P +  ++
Sbjct: 444 -----------VHAGLVDEGRQLFESMNLS-----------------FGLV--PKVEHYS 473

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            ++   A  GL  E+ ++ +KM     +PD I    +L AC        G R   L + 
Sbjct: 474 CMVDLCARAGLLYEAWDLIKKMPG---KPDEIVLGSLLGACQRRRNADVGERVIQLFLE 529



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 149/339 (43%), Gaps = 49/339 (14%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L      G L  G+ +   +++  +     + + ++ +Y KC       ++FD M  +++
Sbjct: 236 LGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDV 295

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTWN +I+G    G +      F  M       D +T   +L AC     +++G+ + + 
Sbjct: 296 VTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETH 355

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
             + G   + +V+SAL+D+Y KCG ++DA RVF+ +  ++ V WN M+S  A +     A
Sbjct: 356 ASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEA 415

Query: 248 IAVFNLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TS 303
           +++F  M  +   ++ +  TF  ++++C   G    GRQ+    +  SF L   V   + 
Sbjct: 416 LSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFE-SMNLSFGLVPKVEHYSC 474

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +VD+ A+ G + +A  +   M  K                                  PD
Sbjct: 475 MVDLCARAGLLYEAWDLIKKMPGK----------------------------------PD 500

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           E+ L S+L +C         R+ +A   +  +Q FL +E
Sbjct: 501 EIVLGSLLGAC--------QRRRNADVGERVIQLFLEME 531



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 17/249 (6%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T    N   ++  VL + +R +G      H       + L   +  G L  GK + +H  
Sbjct: 303 TGYAQNGASNEAIVLFNGMREAGP-----HPDRVTMIEVLSACSTIGALDLGKWVETHAS 357

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + GL + + + + ++ +Y KC + DD  ++F+ M  +N V+WN +IS +   G       
Sbjct: 358 EKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALS 417

Query: 149 YFRRMLLDN--VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALV 204
            FRRM  DN  V+ + ITF  +L ACV A  ++ GR+L    + + FGL   V   S +V
Sbjct: 418 LFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFE-SMNLSFGLVPKVEHYSCMV 476

Query: 205 DLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYALNC--LGDGAIAVFNLMRLEGMK 260
           DL  + G + +A  +  ++  +  ++VL +++ +C       +G+  I +F  M L    
Sbjct: 477 DLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSN-S 535

Query: 261 GDYFTFSSL 269
           G+Y   S +
Sbjct: 536 GNYVISSKI 544


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 212/589 (35%), Positives = 321/589 (54%), Gaps = 12/589 (2%)

Query: 54  TIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
            +HE   +A++F    AL+ +A  G    G QLHS  +K GL + +     +LH+Y KC 
Sbjct: 91  AMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCG 150

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP---YFRRMLLDNVRLDHITFNSLL 169
              D  +LFD M  RN V+WN L++G +   G V P    F  M  +    D  TF +LL
Sbjct: 151 RTRDACRLFDGMPERNTVSWNALVAGYVE-SGKVAPAVQLFVEMEREGFLPDEATFAALL 209

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DL 228
              V      +  +LH  I+K G  L   V +A +  Y +CG + ++RR+FDE+  R DL
Sbjct: 210 -TVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDL 268

Query: 229 VLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           + WN M+  YA + +   A+  F ++MR  G++ D ++F+S++++C        G  IHG
Sbjct: 269 ISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAE-HRDHGGTVIHG 327

Query: 288 LVIKQSFDLDVLVATSLVDMYAK---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           LV K  F+    V  +L+ MY +   N  ++DA + FD +  K+ VSWN+M+ G+ Q+G 
Sbjct: 328 LVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGL 387

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             +A++  R M   +   DE   ++ L SC  L++    RQ+H   I++G  +   + ++
Sbjct: 388 SADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSS 447

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI  YSK G +  A++ F    +   V W S++  YA HG ++    +F +ML   V  D
Sbjct: 448 LIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLD 507

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I F+ +++ACSH GLV EG    N M S Y I    EHY C  DL GR G L +A +L+
Sbjct: 508 HITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELI 567

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            SMP EP +      +GAC+VHG++ LA   A  LLE EP +   Y L+SN+Y+    W 
Sbjct: 568 DSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMWS 627

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           D A ++K M++    KVPG SWIE+  E+H+F + D SHP+   +Y ML
Sbjct: 628 DRAIVQKEMKNKGLSKVPGWSWIEVKNEVHSFNAEDGSHPRMDEIYEML 676



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 153/276 (55%), Gaps = 7/276 (2%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           ARR+FDE+   D   WN +++ +        A  +   M   G+  + F   S + S   
Sbjct: 54  ARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGLAANTFALGSALRSAAA 113

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           +G S LG Q+H L +K     +V  AT+L+ MYAK G   DACR+FDGM  +N VSWN +
Sbjct: 114 MGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNAL 173

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           V G+ ++G    AV+L  +M +  F PDE T A++L+     S      Q+H   +K G 
Sbjct: 174 VAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVND-STCFLMHQLHGKIVKYGS 232

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFE 454
              L + NA I AYS+CG++A + + F  + +  DL++W +++GAYA HG+  E++  F 
Sbjct: 233 ALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFA 292

Query: 455 KML-SHAVRPDSIAFLEVLSACS----HGGLVSEGL 485
            M+ +  V+PD  +F  ++SAC+    HGG V  GL
Sbjct: 293 SMMRASGVQPDMYSFTSIISACAEHRDHGGTVIHGL 328



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 205/415 (49%), Gaps = 11/415 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVY-VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           H+ ++K G+ +  +  NQ+L  Y V         +LFDE+   +  +WN+L++  ++ G 
Sbjct: 23  HATLLKSGVTSP-TPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGA 81

Query: 145 NVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           +       R M    +  +     S LR+        +G +LHS  +K G   N F ++A
Sbjct: 82  HPAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATA 141

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ +Y KCG   DA R+FD +  R+ V WN +V+ Y  +     A+ +F  M  EG   D
Sbjct: 142 LLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPD 201

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF++L+       +  L  Q+HG ++K    L ++V  + +  Y++ G + ++ R+FD
Sbjct: 202 EATFAALLTVVND-STCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFD 260

Query: 323 GMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLASILSSCGSLSIS 380
            +  + +++SWN M+  +  +G   EA++    M++ S   PD  +  SI+S+C      
Sbjct: 261 EIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDH 320

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTSII 437
             T  +H    KNG +    + NALI  Y++      +  A +CF S+   D V+W S++
Sbjct: 321 GGT-VIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSML 379

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             Y+ HGLS +++  F  M S  +  D  AF   L +CS   L+  G +   L+I
Sbjct: 380 TGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVI 434


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 318/564 (56%), Gaps = 4/564 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L  + +   L  G+Q+H   +KLGL   L++ N ++++Y K +       +F+ M  R++
Sbjct: 329 LATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDL 388

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRRLHS 186
           ++WN++I+GI      V     F ++L   ++ DH T  S+L+A     + + + +++H 
Sbjct: 389 ISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHV 448

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             +K     + FVS+AL+D Y +   +++A  +F      DLV WN M+S Y  +  G  
Sbjct: 449 HAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDGHK 507

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            + +F LM  +G + D FT ++++ +CG L +   G+Q+H   IK  +DLD+ V++ ++D
Sbjct: 508 TLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 567

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K G++  A   FD +   + V+W T++ G  +NG+   A+ +   M      PDE T
Sbjct: 568 MYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFT 627

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +A++  +   L+   + RQ+HA A+K    +   +  +L++ Y+KCGSI  A   F  ++
Sbjct: 628 IATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 687

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++  W +++   A HG  KE++++F++M S  ++PD + F+ VLSACSH GLVSE  +
Sbjct: 688 MMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYK 747

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           Y   M  DY I P+ EHY+CL D LGR GL+ EA +L+ SM +E  +      + AC+V 
Sbjct: 748 YIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQ 807

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G     K  A KLLELEP     Y L+SN+YA+   W ++   R MM+ +   K PG SW
Sbjct: 808 GDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSW 867

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMY 630
           IE+  +IH FV  DRS+PQ   +Y
Sbjct: 868 IEVKNKIHLFVVDDRSNPQTELIY 891



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 196/426 (46%), Gaps = 51/426 (11%)

Query: 76  FGFLQQ---------GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           FGFL+          GK  H+ I+ L    +  L N ++ +Y KC +     ++FD+M  
Sbjct: 50  FGFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPE 109

Query: 127 RNIVTWNTLIS-------GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           R++V+WN++++       G++         FR +  D V    +T + +L+ C+ +  + 
Sbjct: 110 RDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVC 169

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
                H +  K+G   + FV+ ALV++Y K G V++ R +F+E+  RD+VLWN+M+  Y 
Sbjct: 170 ASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYL 229

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                + AI + +     G+  +  T   L    G    S+ G+        +SF+    
Sbjct: 230 EMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGD--DSEAGQV-------KSFE---- 276

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
                      NGN        D      ++S N ++ G+   G     +K   DM++  
Sbjct: 277 -----------NGN--------DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESD 317

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D+VT   +L++   L      +QVH  A+K G+   L++ N+LIN Y K   I  A 
Sbjct: 318 LECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLAR 377

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F ++ E DL++W S+I   A   L  E++ +F ++L   ++PD      VL A S   
Sbjct: 378 TVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASS-- 435

Query: 480 LVSEGL 485
            + EGL
Sbjct: 436 -LPEGL 440


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 317/587 (54%), Gaps = 6/587 (1%)

Query: 53  GTIHESTHSAHS-FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
           G +  STH+  S  +   LK  A  G L+ G+QLHS ++K+GL   +   + +L +Y KC
Sbjct: 83  GAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKC 142

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRR--MLLDNVRLDHITFNSLL 169
              DD   +F  M  RN V+WNTL++     G     ++    M L+ V +D  T + LL
Sbjct: 143 GRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLL 202

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-EVLCRDL 228
                A   ++  +LH  I+K G  L   V +A +  Y +C  ++DA RVFD  VLCRDL
Sbjct: 203 TLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDL 262

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN M+  Y ++   D A  VF  M+  G + D +T++ +V +C        G+ +HGL
Sbjct: 263 VTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGL 322

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGN--IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           VIK+  D  V V+ +L+ MY +  +  ++DA R+F  M  K+  +WN+++ G+ Q G   
Sbjct: 323 VIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSE 382

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           +A++L   M       D  T ++++ SC  L+     +Q H  A+K G      + ++LI
Sbjct: 383 DALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLI 442

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
             YSKCG I  A + F +  + + + W SII  YA HG    ++++F  M    V+ D I
Sbjct: 443 FMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHI 502

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            F+ VL+ACSH GLV EG  +   M SD+ I P  EHY C  DL GR G L +A  L+ +
Sbjct: 503 TFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVET 562

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           MP EP +  L   +GAC+  G I LA   A+ LLELEP +   Y ++S +Y   + W + 
Sbjct: 563 MPFEPDAMVLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEK 622

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           A + +MMR+    KVPG SWIE+   +H F + D SHPQ   +Y +L
Sbjct: 623 ASVTRMMRERGVKKVPGWSWIEVKNNVHAFNAEDHSHPQCEEIYILL 669



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 203/410 (49%), Gaps = 11/410 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           H   +KLG        N ++  Y KC   +   ++FDEM  R+ V+WN +IS   + G  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 146 VTPYFRRMLLDNVR-----LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            T +    LL  +R      D  TF S+L+       +++G++LHS +LKVG   N F  
Sbjct: 76  DTTW---QLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSG 132

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           SAL+D+Y KCG V+D   VF  +  R+ V WN +V+ Y+     D A  V + M LEG++
Sbjct: 133 SALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVE 192

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  T S L+         KL  Q+H  ++K   +L   V  + +  Y++  ++ DA RV
Sbjct: 193 IDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERV 252

Query: 321 FDG-MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           FDG +  +++V+WN+M+  +  +     A K+  DM    F PD  T   I+ +C     
Sbjct: 253 FDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEH 312

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS--IAGALQCFGSVKEPDLVTWTSII 437
               + +H   IK G+   + + NALI+ Y +     +  AL+ F S+   D  TW SI+
Sbjct: 313 KTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSIL 372

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             Y   GLS++++ +F +M    +  D   F  V+ +CS    +  G ++
Sbjct: 373 AGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQF 422


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 215/589 (36%), Positives = 335/589 (56%), Gaps = 41/589 (6%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD--DMEKLFDEMRVRNIVTWNTLISG 138
           Q KQ+ +HI   GL N++   +++L       + D      +FD+  + N   WNT+I G
Sbjct: 67  QLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKG 126

Query: 139 IINCGGNVTP----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              C  N       +FR+M+ +    D  +F   L+AC Q  +  VG  +HS I K GF 
Sbjct: 127 Y--CKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFD 184

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FV + L+  Y + G +  AR++FDE   +D+V W  M++ YA N   D AIA+FN M
Sbjct: 185 SDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSM 244

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ----SFDL-------------- 296
               +K +  T  +L+++C   G S++G+ +H  + ++    S +L              
Sbjct: 245 LSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCL 304

Query: 297 -------------DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
                        DV   TSL++ YAKNG++  A ++FD M  +N+VSWN M+ G+ QN 
Sbjct: 305 TTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNS 364

Query: 344 DGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAYAI-KNGVQAFLSI 401
              EA++L  +M+      P E TL  +LS+ G L      +++H   + K G+Q  L +
Sbjct: 365 QPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLIL 424

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           +NA+++ Y+KCGSI  A + F S+ E +LV+W S+I AYA +G +K+++ +F++M+   +
Sbjct: 425 KNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGL 484

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           +PD I F+ VLSACS+GG VSEG  +F  M + + + P  EHY C+ DLL RVGLL EAY
Sbjct: 485 KPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAY 544

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           +L++ MP+E      GA + AC+ HG++ +AK A EKLLEL+P     Y+L++N+ A  +
Sbjct: 545 ELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGK 604

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            W DV  +R+MMR+    KVPG S IEI G+ H F+ +D SH ++  +Y
Sbjct: 605 KWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTSHTRSSEIY 653



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 207/427 (48%), Gaps = 39/427 (9%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK   +F     G  +HS I K G  + L +QN ++  YV+        ++FDE  V++
Sbjct: 158 ALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKD 217

Query: 129 IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +VTW T+I+G    N        F  ML  +V+ + +T  +LL AC Q  D E+G+ LH 
Sbjct: 218 VVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHE 277

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVE-------------------------------D 215
            I +     +  + +A++D+Y KCG +                                 
Sbjct: 278 HIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGS 337

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCG 274
           AR++FDE+  R++V WN M++ Y+ N     A+ +F N++ + G+     T   ++++ G
Sbjct: 338 ARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASG 397

Query: 275 TLGSSKLGRQIH-GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
            LG  ++G++IH   V K    + +++  +++DMYAK G+ID A ++F  M  KN+VSWN
Sbjct: 398 QLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWN 457

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +M+  +   G  ++A+ L   M+     PD +T   +LS+C       E  Q H  +++N
Sbjct: 458 SMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEG-QAHFESMEN 516

Query: 394 --GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESI 450
             GV+        +++  S+ G +  A +    +  E     W +++ A   HG  + + 
Sbjct: 517 CFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAK 576

Query: 451 EVFEKML 457
              EK+L
Sbjct: 577 LAGEKLL 583


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/593 (32%), Positives = 316/593 (53%), Gaps = 46/593 (7%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G L++ +++   I    L N  S  N +L  Y +    D+   LF+ +   +  ++N
Sbjct: 63  ARLGRLREARRVFDGI---PLRNTFSY-NALLSAYARLGRPDEARALFEAIPDPDQCSYN 118

Query: 134 TLISGIINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
            +++ +   G    G+   +   M  D+  L+  +F S L AC    D+  G ++H  + 
Sbjct: 119 AVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVA 178

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           +     +  + +ALVD+Y KC    DARRVFD +  R++V WN +++CY  N     A+ 
Sbjct: 179 RSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALV 238

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMY 308
           +F  M   G   D  T SS++++C  L + + GRQ+H  ++K+     D+++  +LVDMY
Sbjct: 239 LFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMY 298

Query: 309 AKNG-------------------------------NIDDACRVFDGMTAKNVVSWNTMVV 337
           AK G                               N++DA  VF  M  KNV++WN ++ 
Sbjct: 299 AKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIA 358

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            + QNG+  EA++L   + + S  P   T  ++L++CG++++    +Q H + +K G + 
Sbjct: 359 AYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRF 418

Query: 398 FLSIE------NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
               E      N+L++ Y K GSI    + F  +   D V+W ++I  YA +G +K+++ 
Sbjct: 419 DFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALH 478

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +FE+ML     PDS+  + VLSAC H GLV EG R+F+ M  D+ I P  +HYTC+ DLL
Sbjct: 479 LFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLL 538

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G L EA +L+  MP EP S    + +GAC++H ++ L +  A +L EL+P     Y 
Sbjct: 539 GRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYV 598

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           L+SN+YA    W DV R+R+ M+D    K PGCSWIEI  +++ F++ D  HP
Sbjct: 599 LLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHP 651



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 190/384 (49%), Gaps = 42/384 (10%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LLR+   A  +   R  H  +LK       F+ + LV  Y + G + +ARRVFD +  R+
Sbjct: 26  LLRS---APSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRN 82

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFN----------------------------LMRLEGM 259
              +N ++S YA     D A A+F                             L  L  M
Sbjct: 83  TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAM 142

Query: 260 KGDYF-----TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             D F     +F+S +++C      + G Q+HGLV +     DV + T+LVDMYAK    
Sbjct: 143 HADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERP 202

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DA RVFD M  +NVVSWN+++  + QNG   EA+ L  +M+   F PDEVTL+S++S+C
Sbjct: 203 VDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSAC 262

Query: 375 GSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
             L+   E RQVHA+ +K + ++  + + NAL++ Y+KCG    A   F S+    +V+ 
Sbjct: 263 AGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSE 322

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           TSI+  YA     +++  VF +M+   V    IA+  +++A +  G   E +R F  +  
Sbjct: 323 TSILAGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLFVQLKR 378

Query: 494 DYHILPDSEHYTCLTDLLGRVGLL 517
           D  I P    Y  + +  G + +L
Sbjct: 379 D-SIWPTHYTYGNVLNACGNIAVL 401



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 33/280 (11%)

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
            R  HG V+K     +  +  +LV  YA+ G + +A RVFDG+  +N  S+N ++  + +
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 342 ---------------------------------NGDGREAVKLLRDMLQGSFCPDEVTLA 368
                                             G   +A++ L  M    F  +  + A
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S LS+C +        QVH    ++     + I  AL++ Y+KC     A + F ++ E 
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPER 215

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           ++V+W S+I  Y  +G   E++ +F +M++    PD +    V+SAC+      EG +  
Sbjct: 216 NVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVH 275

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             M+    +  D      L D+  + G   EA  +  SMP
Sbjct: 276 AHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 319/565 (56%), Gaps = 11/565 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +      +G+++H  I +L L + + +   ++  Y KC   DD +++FD+M  R++
Sbjct: 126 LKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDV 185

Query: 130 VTWNTLISGIINCGGNVTPYFRRM--LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN++ISG     G+     R +  + ++V  +  T   +L A  Q + +  G+ +H F
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGF 245

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDG 246
            ++ GF  +  V + ++D+YGKC  ++ ARR+FD + + ++ V W+ MV  Y +      
Sbjct: 246 CVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMRE 305

Query: 247 AIAVFNLMRLEGMKGDYF-----TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
           A+ +F   +L  +K D       T ++++  C  L     G  +H   IK  F LD++V 
Sbjct: 306 ALELF--CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVG 363

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +L+ MYAK G I+ A R F+ M  ++ VS+  ++ G+ QNG+  E +++  +M      
Sbjct: 364 NTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGIN 423

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P++ TLAS+L +C  L+        H YAI  G  A   I NALI+ Y+KCG I  A + 
Sbjct: 424 PEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKV 483

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  + +  +V+W ++I AY  HG+  E++ +F+ M S  ++PD + F+ ++SACSH GLV
Sbjct: 484 FDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLV 543

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           +EG  +FN M  D+ I+P  EHY C+ DLL R GL  E +  +  MP+EP     GA + 
Sbjct: 544 AEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLS 603

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC+V+ ++ L +  ++K+ +L P    N+ L+SN+Y++   W D A++R   ++    K 
Sbjct: 604 ACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKS 663

Query: 602 PGCSWIEIAGEIHTFVSSD-RSHPQ 625
           PGCSWIEI+G +HTF+    RSHPQ
Sbjct: 664 PGCSWIEISGVVHTFLGGGYRSHPQ 688



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 167/596 (28%), Positives = 282/596 (47%), Gaps = 41/596 (6%)

Query: 79  LQQGKQLHSHIMK-LGLCNKLSLQN------QVLHVYVKCKAFDDMEKLFDEM--RVRNI 129
           L +GK +H H++K L   ++ +L N      +++ +Y+ C        +FD+M  R +N+
Sbjct: 25  LFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNV 84

Query: 130 VTWNTLISGIINCGGNVTPY------FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           V WN LI      G    PY      + +ML   +  +  TF  +L+AC    +   GR 
Sbjct: 85  VLWNLLIRAYAWNG----PYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGRE 140

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  I ++    N +VS+ALVD Y KCG ++DA+ VFD++  RD+V WN M+S ++L+  
Sbjct: 141 IHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEG 200

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               +A   +     +  +  T   ++ +   + S + G++IHG  +++ F  DV+V T 
Sbjct: 201 SYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTG 260

Query: 304 LVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDML---QGS 359
           ++D+Y K   ID A R+FD M   KN V+W+ MV  +      REA++L   +L      
Sbjct: 261 ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDV 320

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
                VTLA+++  C +L+       +H YAIK+G    L + N L++ Y+KCG I GA+
Sbjct: 321 IVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAM 380

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH-G 478
           + F  +   D V++T+II  Y  +G S+E + +F +M    + P+      VL AC+H  
Sbjct: 381 RFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLA 440

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL      +   +I  +    D+     L D+  + G +  A  +   M  +    +   
Sbjct: 441 GLHYGSCSHCYAIICGF--TADTMICNALIDMYAKCGKIDTARKVFDRMH-KRGIVSWNT 497

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV--------SNVYASERCWFDVARLR 590
            I A  +HG IGL        ++ E  KP +   +        S + A  + WF+     
Sbjct: 498 MIIAYGIHG-IGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQD 556

Query: 591 KMMRDNCDHKVPGCSWIEIAG---EIHTFVSSDRSHPQAVHMYAML--CTVFGLME 641
             +    +H       +  AG   E+H+F+      P      A+L  C V+  +E
Sbjct: 557 FGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVE 612



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 163/303 (53%), Gaps = 16/303 (5%)

Query: 168 LLRACVQADDIEVGRRLHSFILKV-----GFGLNCF--VSSALVDLYGKCGFVEDARRVF 220
           LL +C+Q+  +  G+ +H  +LK         L  F      LVDLY  C  ++ AR VF
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74

Query: 221 DEVLCR--DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           D++  R  ++VLWN+++  YA N   + AI ++  M   G+  + FTF  ++ +C  L  
Sbjct: 75  DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           +  GR+IH  + +   + +V V+T+LVD YAK G +DDA  VFD M  ++VV+WN+M+ G
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 339 FG-QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           F    G   E  +LL  M Q    P+  T+  +L +   ++     +++H + ++ G   
Sbjct: 195 FSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVG 253

Query: 398 FLSIENALINAYSKCGSIAGALQCF---GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
            + +   +++ Y KC  I  A + F   G VK    VTW++++GAY      +E++E+F 
Sbjct: 254 DVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNE--VTWSAMVGAYVVCDFMREALELFC 311

Query: 455 KML 457
           ++L
Sbjct: 312 QLL 314



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 125/286 (43%), Gaps = 16/286 (5%)

Query: 269 LVNSCGTLGSSKLGRQIHGLVIK----------QSFDLDVLVATSLVDMYAKNGNIDDAC 318
           L+ SC    S   G+ IH  ++K           +FD+       LVD+Y     +  A 
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPF---EKLVDLYIACSELKIAR 71

Query: 319 RVFDGMT--AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
            VFD M    KNVV WN ++  +  NG   EA+ L   ML     P+  T   +L +C +
Sbjct: 72  HVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSA 131

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L  + E R++H    +  +++ + +  AL++ Y+KCG +  A + F  + + D+V W S+
Sbjct: 132 LKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSM 191

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  ++ H  S + +      + + V P+S   + VL A +    +  G       +    
Sbjct: 192 ISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR-G 250

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
            + D    T + D+ G+   +  A  +   M I     T  A +GA
Sbjct: 251 FVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 10/216 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A    L  G   H + +  G      + N ++ +Y KC   D   K+FD M  
Sbjct: 430 ASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHK 489

Query: 127 RNIVTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R IV+WNT+I   GI   G      F  M  + ++ D +TF  L+ AC  +  +  G+  
Sbjct: 490 RGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYW 549

Query: 185 HSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSC---Y 238
            + + +  FG+   +   + +VDL  + G  ++     +++ L  D+ +W  ++S    Y
Sbjct: 550 FNAMTQ-DFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVY 608

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
               LG+G       +  E   G++   S++ ++ G
Sbjct: 609 KNVELGEGVSKKIQKLGPES-TGNFVLLSNMYSAVG 643


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 209/659 (31%), Positives = 339/659 (51%), Gaps = 31/659 (4%)

Query: 8   PPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYS 67
           PP  +V F +  SY      Q  T  + N +                + E      + Y 
Sbjct: 29  PPPGSVGFDKGNSY------QGSTQVLENGRLEAPPRPLDAQEAMAMLKEGQSVQSAMYV 82

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
             L    + G L   K LH H++K G    + +   +++VY++C    D   LFDEM  +
Sbjct: 83  PLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEK 142

Query: 128 NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+VTW  LI+G       V     F  ML         T   +L ACV + +I++G+++H
Sbjct: 143 NVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVH 202

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            + +K G      + ++L  LY K G +E   R F  +  ++++ W  M+S     C  D
Sbjct: 203 GYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISA----CAED 258

Query: 246 GAIAVFNL-MRLEGMKGDY----FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                  L + L+ +KG+     FT +S+++ CGT     LG+Q+ G   K     ++ V
Sbjct: 259 ENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPV 318

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----------GREAV 349
             S + +Y + G  ++A R+F+ M   +V++WN M+ GF Q  D           G +A+
Sbjct: 319 KNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQAL 378

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
           K+ RD+++ +  PD  T +SILS C ++    +  Q+HA  IK G  + + + +AL+N Y
Sbjct: 379 KIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMY 438

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           +KCG I  A + F  +    LVTWTS+I  Y+ HG   ++I++FE M+    +P+ I F+
Sbjct: 439 NKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFV 498

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            +LSACS+ GLV E +RYF++M ++YHI P  +HY C+ D+  R+G L +AY  +     
Sbjct: 499 SLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGF 558

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           EP      + +  C+ HG++ LA +AA++LLEL+P     Y L+ N+Y S   W DVAR+
Sbjct: 559 EPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARV 618

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           RK+ +      +   SWI I  +++ F + DRSHPQ+  +Y +L T   L+E+    G+
Sbjct: 619 RKLSKHEDLGILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLET---LLEKAKAIGY 674


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 322/576 (55%), Gaps = 3/576 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL+      F + G ++H+ I+K      + + N ++ ++V+        ++FDE+  ++
Sbjct: 118 ALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKD 177

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            +TWN++I+G    G       +F  +   N++ D ++  S+L A  +   +  G+ +H+
Sbjct: 178 NITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHA 237

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           + +K     N  + + L+D+Y KC  V  A  VFD+++ +DL+ W  +++ YA N     
Sbjct: 238 YAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTE 297

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +   ++ +GM  D     S + +C  L      +++HG  +K+    D+++   ++D
Sbjct: 298 ALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIID 356

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +YA  GNI+ A R+F+ +  K+VVSW +M+  +  NG   EA+ +   M + S  PD +T
Sbjct: 357 VYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSIT 416

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L SILS+  SLS   + +++H +  + G     S  N+L++ Y+ CGS+  A + F   +
Sbjct: 417 LVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR 476

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
              LV WT++I AY  HG  K ++E+F  M    + PD I FL +L ACSH GL++EG R
Sbjct: 477 SKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKR 536

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
               M   Y + P  EHY CL DLLGR   L EAY  + SM IEP ++   AF+GAC++H
Sbjct: 537 LLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIH 596

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            +  L + AA+KLL+L+P  P +Y L+SNV+A+   W DV  +R  M+     K PGCSW
Sbjct: 597 SNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSW 656

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           IE+  ++HTF+  D+SHP++  +Y  L  +   +E+
Sbjct: 657 IEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEK 692



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 258/505 (51%), Gaps = 11/505 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN-IVTWNTLIS 137
           + +G ++H  I+K G  + + + N ++ +Y KC       KLFD M  RN +V+WN++IS
Sbjct: 26  IHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIIS 85

Query: 138 GIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                G        FR M    V  +  T  + L+AC  +   ++G  +H+ ILK    L
Sbjct: 86  AYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVL 145

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + +V++ALV ++ + G +  A R+FDE+  +D + WN M++ +  N L + A+  F  ++
Sbjct: 146 DVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQ 205

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
              +K D  +  S++ + G LG    G++IH   +K   D ++ +  +L+DMY+K   + 
Sbjct: 206 DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVA 265

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  VFD M  K+++SW T++  + QN    EA+KLLR +       D + + S L +C 
Sbjct: 266 YAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L      ++VH Y +K G+   + ++N +I+ Y+ CG+I  A + F S+K  D+V+WTS
Sbjct: 326 GLRCLSHAKEVHGYTLKRGLSDLM-MQNMIIDVYADCGNINYATRMFESIKCKDVVSWTS 384

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  Y  +GL+ E++ VF  M   +V PDSI  + +LSA +    +++G      +    
Sbjct: 385 MISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKG 444

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            +L  S     L D+    G L  AY +     I  RS +L  +      +G  G  K A
Sbjct: 445 FMLEGST-VNSLVDMYACCGSLENAYKVF----ICTRSKSLVLWTTMINAYGMHGRGKAA 499

Query: 556 AEKLLELEPSK--PVNYALVSNVYA 578
            E    +E  K  P +   ++ +YA
Sbjct: 500 VELFSIMEDQKLIPDHITFLALLYA 524



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 185/320 (57%), Gaps = 1/320 (0%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V  D  TF  +L+AC   +DI  G  +H  I+K G+    FV+++LV +Y KC  +  AR
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGAR 65

Query: 218 RVFDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           ++FD +  R D+V WN ++S Y+LN     A+ +F  M+  G+  + +T  + + +C   
Sbjct: 66  KLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDS 125

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
              KLG +IH  ++K +  LDV VA +LV M+ + G +  A R+FD +  K+ ++WN+M+
Sbjct: 126 SFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMI 185

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            GF QNG   EA++    +   +  PDEV+L SIL++ G L      +++HAYA+KN + 
Sbjct: 186 AGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLD 245

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + L I N LI+ YSKC  +A A   F  +   DL++WT++I AYA +    E++++  K+
Sbjct: 246 SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKV 305

Query: 457 LSHAVRPDSIAFLEVLSACS 476
            +  +  D++     L ACS
Sbjct: 306 QTKGMDVDTMMIGSTLLACS 325



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 1/232 (0%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR+ G+  D FTF  ++ +CG +     G +IHGL+IK  +D  V VA SLV MYAK  +
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 314 IDDACRVFDGMTAKN-VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           I  A ++FD M  +N VVSWN+++  +  NG   EA+ L R+M +     +  TL + L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C   S      ++HA  +K+     + + NAL+  + + G ++ A + F  + E D +T
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           W S+I  +  +GL  E+++ F  +    ++PD ++ + +L+A    G +  G
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG 232


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 192/584 (32%), Positives = 322/584 (55%), Gaps = 6/584 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   A F +L+ G+QLHS I+K    + L + N ++ +Y K  A  +  K F+ M 
Sbjct: 321 YTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMT 380

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ ++WN +I G +           FRRM+LD +  D ++  S+L AC     +E G++
Sbjct: 381 YRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ 440

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H   +K+G   N F  S+L+D+Y KCG ++DA + +  +  R +V  N +++ YAL   
Sbjct: 441 FHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNT 500

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVAT 302
            + +I + + M++ G+K    TF+SL++ C       LG QIH  ++K+        + T
Sbjct: 501 KE-SINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGT 559

Query: 303 SLVDMYAKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           SL+ MY  +  + DA  +F   ++ K++V W  ++ G  QN     A+ L R+M   +  
Sbjct: 560 SLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNIS 619

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD+ T  ++L +C  LS   + R++H+     G        +AL++ Y+KCG +  ++Q 
Sbjct: 620 PDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQV 679

Query: 422 FGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
           F  +  + D+++W S+I  +A +G +K +++VF++M    + PD + FL VL+ACSH G 
Sbjct: 680 FEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGW 739

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG + F++M++ Y I P  +HY C+ DLLGR G L EA + +  + +EP +      +
Sbjct: 740 VYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLL 799

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC++HG     + AA+KL+ELEP     Y L+SN+YA+   W +   LR+ M      K
Sbjct: 800 GACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQK 859

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           +PGCSWI +  E + FV+ D SH     +   L  +  L+++NN
Sbjct: 860 IPGCSWIVVGQETNLFVAGDISHSSYDEISKALKHLTALIKDNN 903



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 216/387 (55%), Gaps = 5/387 (1%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRV--RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           VL+ Y+     DD  +LF +M +  RN+V WN +ISG            +F +M    V+
Sbjct: 155 VLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVK 214

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
               T  S+L A      +  G  +H+  +K GF  + +V+S+L+++YGKC   +DAR+V
Sbjct: 215 SSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQV 274

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD +  +++++WN M+  Y+ N      + +F  M   G+  D FT++S++++C      
Sbjct: 275 FDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYL 334

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           ++GRQ+H  +IK+ F  ++ V  +L+DMYAK G + +A + F+ MT ++ +SWN ++VG+
Sbjct: 335 EVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGY 394

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q      A  L R M+     PDEV+LASILS+CG++ +    +Q H  ++K G++  L
Sbjct: 395 VQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNL 454

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
              ++LI+ YSKCG I  A + + S+ E  +V+  ++I  YA    +KESI +  +M   
Sbjct: 455 FAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQIL 513

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLR 486
            ++P  I F  ++  C     V  GL+
Sbjct: 514 GLKPSEITFASLIDVCKGSAKVILGLQ 540



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 252/480 (52%), Gaps = 23/480 (4%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S+ S  +  L   A    L  G  +H+H +K G  + + + + ++++Y KC+  DD  ++
Sbjct: 215 SSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQV 274

Query: 121 FDEMRVRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           FD +  +N++ WN ++ G+ +  G   NV   F  M+   +  D  T+ S+L  C   + 
Sbjct: 275 FDAISQKNMIVWNAML-GVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEY 333

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +EVGR+LHS I+K  F  N FV++AL+D+Y K G +++A + F+ +  RD + WN ++  
Sbjct: 334 LEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVG 393

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y    +  GA ++F  M L+G+  D  + +S++++CG +   + G+Q H L +K   + +
Sbjct: 394 YVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETN 453

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           +   +SL+DMY+K G+I DA + +  M  ++VVS N ++ G+    + +E++ LL +M  
Sbjct: 454 LFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKESINLLHEMQI 512

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV---QAFLSIENALINAYSKCGS 414
               P E+T AS++  C   +      Q+H   +K G+     FL    +L+  Y     
Sbjct: 513 LGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLG--TSLLGMYMDSQR 570

Query: 415 IAGA---LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           +A A      F S+K   +V WT++I  +  +  S  ++ ++ +M  + + PD   F+ V
Sbjct: 571 LADANILFSEFSSLK--SIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTV 628

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVGLL---VEAYDLLAS 526
           L AC+    + +G    +L+   +H   D +  T   L D+  + G +   V+ ++ LA+
Sbjct: 629 LQACALLSSLHDGREIHSLI---FHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELAT 685



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 233/479 (48%), Gaps = 46/479 (9%)

Query: 58  STHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           S HS   F ++  L   AK   L  G+ +HS ++K GL +    Q  ++H+Y KC +   
Sbjct: 41  SGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTC 100

Query: 117 MEKLFDEMRVRNI--VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
              +F      ++  V+W  LISG +  G    P+    + D +R      NS +     
Sbjct: 101 ARTIFASAPFPHLHTVSWTALISGYVQAG---LPHEALHIFDKMR------NSAV----- 146

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWN 232
            D + +   L+++I                      G ++DA ++F +  +  R++V WN
Sbjct: 147 PDQVALVTVLNAYI--------------------SLGKLDDACQLFQQMPIPIRNVVAWN 186

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           VM+S +A     + A+A F+ M   G+K    T +S++++  +L +   G  +H   IKQ
Sbjct: 187 VMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQ 246

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            F+  + VA+SL++MY K    DDA +VFD ++ KN++ WN M+  + QNG     ++L 
Sbjct: 247 GFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELF 306

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            DM+     PDE T  SILS+C         RQ+H+  IK    + L + NALI+ Y+K 
Sbjct: 307 LDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKA 366

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G++  A + F  +   D ++W +II  Y    +   +  +F +M+   + PD ++   +L
Sbjct: 367 GALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASIL 426

Query: 473 SACSHGGLVSEGLRYFNLMIS---DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           SAC +  ++  G ++  L +    + ++   S     L D+  + G + +A+   +SMP
Sbjct: 427 SACGNIKVLEAGQQFHCLSVKLGLETNLFAGSS----LIDMYSKCGDIKDAHKTYSSMP 481



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 44/358 (12%)

Query: 124 MRVRNIVTWNTLISGIINCGGN-VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           +RVR    WN  + G  +     V  ++   +      D  TF   L AC +  ++ +GR
Sbjct: 11  LRVRQ---WNWRVQGTKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGR 67

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL--VLWNVMVSCYAL 240
            +HS ++K G     F   AL+ LY KC  +  AR +F       L  V W  ++S Y  
Sbjct: 68  AVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQ 127

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
             L   A+ +F+ MR   +                                     D + 
Sbjct: 128 AGLPHEALHIFDKMRNSAVP------------------------------------DQVA 151

Query: 301 ATSLVDMYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
             ++++ Y   G +DDAC++F  M    +NVV+WN M+ G  +     EA+     M + 
Sbjct: 152 LVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKH 211

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
                  TLAS+LS+  SL+       VHA+AIK G ++ + + ++LIN Y KC     A
Sbjct: 212 GVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDA 271

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            Q F ++ + +++ W +++G Y+ +G     +E+F  M+S  + PD   +  +LS C+
Sbjct: 272 RQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCA 329



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           V  WN  V G       R  ++     +     PD+ T A  LS+C  L      R VH+
Sbjct: 13  VRQWNWRVQGTKHYSSER-VLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHS 71

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL--VTWTSIIGAYAFHGLS 446
             IK+G+++    + ALI+ Y+KC S+  A   F S   P L  V+WT++I  Y   GL 
Sbjct: 72  CVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLP 131

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            E++ +F+KM + AV PD +A + VL+A    G + +  + F  M
Sbjct: 132 HEALHIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDACQLFQQM 175


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 183/479 (38%), Positives = 281/479 (58%), Gaps = 1/479 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + S+L++CV +  +  GR+LH  +L  G G +  +++ LVDLY  CG V  ARR+FD + 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R++ LWNV++  YA +   + AI ++  M   G++ D FT+   + +C  L   + GR+
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H  V+   +  D+ V   LVDMYAK G +DDA  VFD +  ++ V WN+M+  +GQNG 
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA+ L RDM      P   TL S +S+    +     R++H +  + G      ++ +
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTS 304

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRP 463
           L++ Y+K G +  A   F  + + +LV+W ++I  Y  HG   E++++F KM   A V P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D+I F+ VLSAC+HGG+V E   +F LM+  Y I P  +H+TCL D+LG  G   EAYDL
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  MP++P S   GA +  CK+H ++ L + A +KL+ELEP    NY L+SN+YA    W
Sbjct: 425 IKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKW 484

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
              AR+RK+M +    K+ GCSWIE+ G+ H F+  D SHP++  +Y  L  + GLM +
Sbjct: 485 EKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSD 543



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 193/395 (48%), Gaps = 13/395 (3%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S+ +++  Y+  L+       L  G+QLH  ++  GL     L  +++ +Y  C      
Sbjct: 57  SSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHA 116

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            +LFD M  RN+  WN LI      G +      +R M+   V  D+ T+   L+AC   
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAAL 176

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D+E GR +H  +L   +G + FV + LVD+Y KCG V+DAR VFD +  RD V+WN M+
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + Y  N     A+++   M   G+     T  S +++     +   GR++HG   ++ FD
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFD 296

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
               + TSLVDMYAK+G +  A  +F+ +  + +VSWN M+ G+G +G   EA+KL   M
Sbjct: 297 RQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKM 356

Query: 356 -LQGSFCPDEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAY 409
            ++    PD +T   +LS+C    +  E ++     V  Y+IK  VQ F      L++  
Sbjct: 357 RVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHF----TCLVDVL 412

Query: 410 SKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFH 443
              G    A     G   +PD   W +++     H
Sbjct: 413 GHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIH 447


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 195/565 (34%), Positives = 315/565 (55%), Gaps = 8/565 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ-NQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L+V A+ G L  G++LH+ ++K G  ++L++Q N +L +Y K    D   ++F ++  ++
Sbjct: 274 LQVCAELGLLSLGRELHAALLKCG--SELNIQCNALLVMYAKYGRVDSALRVFGQIAEKD 331

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            ++WN+++S  +          +F  ML    + DH    SL  A      +  GR  H+
Sbjct: 332 YISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHA 391

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           + +K     +  V + L+D+Y KCG +E + +VF+ +  RD + W  +++C+A +     
Sbjct: 392 YAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSE 451

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +   ++ EG+  D     S++ +C  L S  L +Q+H   I+    LD+++   L+D
Sbjct: 452 ALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLID 510

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y + G  D +  +F  +  K++VSW +M+     NG    AV L  +M + +  PD V 
Sbjct: 511 IYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVA 570

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L SIL +   LS   + +QVH + I+        + ++L++ YS CGS+  A++ F   K
Sbjct: 571 LVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAK 630

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V WT++I A   HG  K++I++F++ML   + PD ++FL +L ACSH  LV EG  
Sbjct: 631 CKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKH 690

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           Y ++M+S Y + P  EHY C+ D+LGR G   EAY+ + +MP++P+S    A +GAC+VH
Sbjct: 691 YLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVH 750

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            + GLA  AA KLLELEP  P NY LVSNV+A    W +    R  M +    K P CSW
Sbjct: 751 RNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSW 810

Query: 607 IEIAGEIHTFVSSDRSH--PQAVHM 629
           IEI   IHTF S D  H   +A+H+
Sbjct: 811 IEIGNNIHTFTSGDYCHRDSEAIHL 835



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 213/424 (50%), Gaps = 11/424 (2%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS---LQNQVLHVYVKCKAFDDME 118
           A   Y   L + A      +G+Q+H+H +  G  N+     L  +++ +Y +C   DD  
Sbjct: 56  AREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDAR 115

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGG-----NVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           +LF+ M  R + +WN L+   ++ G       V    R         D  T  S+L+AC 
Sbjct: 116 RLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACG 175

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD--EVLCRDLVLW 231
              D   G  +H   +KVG   +  V++AL+ +Y KCG ++ A RVF+  +   RD+  W
Sbjct: 176 AEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASW 235

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +VS    N     A+A+F  M+  G   + +T  +++  C  LG   LGR++H  ++K
Sbjct: 236 NSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLK 295

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
              +L++     LV MYAK G +D A RVF  +  K+ +SWN+M+  + QN    EA+  
Sbjct: 296 CGSELNIQCNALLV-MYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDF 354

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
             +MLQ  F PD   + S+ S+ G LS     R+ HAYAIK  +   L + N L++ Y K
Sbjct: 355 FGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIK 414

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CGSI  + + F S+   D ++WT+I+  +A      E++E+  ++    +  DS+    +
Sbjct: 415 CGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSI 474

Query: 472 LSAC 475
           L  C
Sbjct: 475 LETC 478



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 190/360 (52%), Gaps = 14/360 (3%)

Query: 181 GRRLHSFILKVGFGLN----CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           GR++H+  +  G  LN     F+++ LV +YG+CG V+DARR+F+ +  R +  WN +V 
Sbjct: 76  GRQVHAHAVTTG-SLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKG---DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
            Y  +     A+ V+  MR     G   D  T +S++ +CG  G  + G ++HGL +K  
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMT--AKNVVSWNTMVVGFGQNGDGREAVKL 351
            D   LVA +L+ MYAK G +D A RVF+ +   A++V SWN++V G  QNG   EA+ L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE-NALINAYS 410
            R M    F  +  T  ++L  C  L +    R++HA  +K G +  L+I+ NAL+  Y+
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSE--LNIQCNALLVMYA 312

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G +  AL+ FG + E D ++W S++  Y  +    E+I+ F +ML H  +PD    + 
Sbjct: 313 KYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVS 372

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           + SA  H   ++ G R F+       +  D +    L D+  + G +  +  +  SM I 
Sbjct: 373 LSSALGHLSRLNNG-REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR 431


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/628 (32%), Positives = 329/628 (52%), Gaps = 20/628 (3%)

Query: 36  NAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC 95
           N Q +D  ++  Q+  SG   +        +   +K     G +  G+QLH+H++K    
Sbjct: 238 NGQANDAIIMYIQMTRSGQFPDQLT-----FGSVIKACYIAGDIDLGRQLHAHVIKSWFG 292

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP-YFRRML 154
           + L+ QN ++ +Y      +    +F  +  +++++W T+I+G I  G  V   Y  R L
Sbjct: 293 HHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDL 352

Query: 155 LDN--VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           L     + +   F S+  AC    ++E G+++H   +K G   N F   +L D+Y K GF
Sbjct: 353 LRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGF 412

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +  A+  F ++   D+V WN +++ +A N   + AI  F  M   G+  D  T+ SL+ +
Sbjct: 413 LPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCT 472

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVS 331
           CG+      GRQIH  ++K  FD ++ V  SL+ MY K  ++ DA  VF  ++   N+VS
Sbjct: 473 CGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVS 532

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN ++    Q     E  +L ++M      PD +T+ ++L +C  L+      QVH Y+I
Sbjct: 533 WNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSI 592

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           K+G+   +S+ N LI+ Y+KCGS+  A   F S +  D+V+W+S+I  YA  GL  E++ 
Sbjct: 593 KSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALN 652

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F  M +  V+P+ + +L  LSACSH GLV EG R +  M +++ I P  EH++C+ DLL
Sbjct: 653 LFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLL 712

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
            R G L EA   +    ++         + ACK H ++ +A+  A  +L+L+PS      
Sbjct: 713 ARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMV 772

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           ++ N++AS   W +VA+LRK+M+     KVPG SWIE+  + H F S D SHPQ   +Y 
Sbjct: 773 MLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYT 832

Query: 632 MLCTVFGLMEENNVSGHCNVLDKEMDEC 659
           ML  ++             VLD   D C
Sbjct: 833 MLEELWS-----------QVLDDGYDPC 849



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/536 (29%), Positives = 271/536 (50%), Gaps = 27/536 (5%)

Query: 12  TVH--FKRPLSY----LTPALYQNQTTTI-TNA-------QKHDRSVLSS---QLRNSGT 54
           T+H  F+R  SY    L PA++ N +  + TN+       Q H +  L +    L+NS  
Sbjct: 96  TIHSVFRRMYSYVKPSLQPAIFSNLSKELPTNSYIIFLCKQHHYKEALEAFDFHLKNS-- 153

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
              ++H   S Y+  +   A F  L   K++H H++K      + LQN ++++Y KC + 
Sbjct: 154 ---NSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSM 210

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
            D  K+FD M++ N+V+W ++ISG    G   +    + +M       D +TF S+++AC
Sbjct: 211 KDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKAC 270

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             A DI++GR+LH+ ++K  FG +    +AL+ +Y   G +E A  VF  +  +DL+ W 
Sbjct: 271 YIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWG 330

Query: 233 VMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
            M++ Y        A+ +F +L+R    + + F F S+ ++C +L   + G+Q+HG+ +K
Sbjct: 331 TMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVK 390

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                +V    SL DMYAK G +  A   F  +   ++VSWN ++  F  NGD  EA+  
Sbjct: 391 FGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDF 450

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
            R M+     PD +T  S+L +CGS     + RQ+H+Y +K G    +++ N+L+  Y+K
Sbjct: 451 FRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTK 510

Query: 412 CGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           C  +  AL  F  + +  +LV+W +I+ A        E+  ++++M     +PDSI    
Sbjct: 511 CSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITT 570

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
           +L  C+    +  G +     I    IL D      L D+  + G L  A D+  S
Sbjct: 571 LLGTCAELTSLGVGNQVHCYSIKSGLIL-DVSVCNGLIDMYAKCGSLKHARDVFDS 625


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 312/563 (55%), Gaps = 3/563 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H +++K G   + ++ N ++  Y K    +D   +FDEM  R+I++WN++I G  +
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F RM L+   LD  T  S++ ACVQ+    +G  +H + ++ G      +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+D+Y  C       ++F  +  +++V W  M++ Y      D    +F  M LEG+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D F  +S +++     S K G+ +HG  I+   +  + VA +L++MY K G +++A  
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD +T K+ +SWNT++ G+ ++    EA  L  +ML     P+ VT+A IL +  SLS 
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLSS 301

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               R++HAYA++ G      + NAL++ Y KCG++  A + F  +   +L++WT +I  
Sbjct: 302 LERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAG 361

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y  HG  +++I +FE+M    ++PD+ +F  +L ACSH GL  EG R+FN M +++ I P
Sbjct: 362 YGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEP 421

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             +HY C+ DLL   G L EAY+ + +MPIEP S    + +  C++H ++ LA+  AE +
Sbjct: 422 KLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMV 481

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
            ELEP     Y L++N+YA    W  V +L+  +      +  GCSWIE+ G+ H F + 
Sbjct: 482 FELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAE 541

Query: 620 DRSHPQAVHMYAMLCTVFGLMEE 642
           +R+HPQ + +   L  V   M+E
Sbjct: 542 NRNHPQGMRIAEFLDDVARRMQE 564



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 139/261 (53%), Gaps = 4/261 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL   A    L+ GK +H + ++ G+   L + N ++ +YVKC   ++   +FD +  
Sbjct: 190 TSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTK 249

Query: 127 RNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ ++WNTLI G    N        F  MLL  +R + +T   +L A      +E GR +
Sbjct: 250 KDTISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLSSLERGREM 308

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H++ ++ G+  + FV++ALVD+Y KCG +  ARR+FD +  ++L+ W +M++ Y ++  G
Sbjct: 309 HAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRG 368

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             AIA+F  M+  G++ D  +FS+++ +C   G    G R  + +  +   +  +     
Sbjct: 369 RDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYAC 428

Query: 304 LVDMYAKNGNIDDACRVFDGM 324
           +VD+    GN+ +A    + M
Sbjct: 429 MVDLLCHTGNLKEAYEFIETM 449


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/541 (35%), Positives = 306/541 (56%), Gaps = 2/541 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK     G  + GK +H + +K+G  + L +    +++Y KC   D     FD++  ++I
Sbjct: 153 LKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDI 212

Query: 130 VTWNTLISGII-NC-GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WNT+I+G   NC        F +M L+  + +  TF  +L+A     D  VGR  H+ 
Sbjct: 213 VAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAK 272

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           +LK+G  ++ FV++ALVD+Y K   +ED  R F E+  R+LV +N +++ Y+L    + A
Sbjct: 273 VLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEA 332

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + V++ ++ EGM+ D FTF  L +SC    +   G Q+H   +K   D DV V  S+V+ 
Sbjct: 333 LRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNF 392

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G  D A   F+ +   N V W  ++ GF QNG+G +A+     M +     DE + 
Sbjct: 393 YSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSS 452

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +S++ +  S +   + R +HA+ +K+G+   + + +A+I+ YSKCG +  A + F  + E
Sbjct: 453 SSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPE 512

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            ++V+W S+I  YA +G  KE++ +F++M S  + P ++ F+ +L ACSH GLV EG  +
Sbjct: 513 KNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNF 572

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +NLM+ +Y I P  EH TC+ DLLGR G L EA   L S          G+ + AC VH 
Sbjct: 573 YNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHK 632

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +  +   AA+  L LEP    +Y  +SN+YAS+  W +V+R+R +M+D    K PGCSWI
Sbjct: 633 NSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWI 692

Query: 608 E 608
           E
Sbjct: 693 E 693



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/469 (30%), Positives = 245/469 (52%), Gaps = 7/469 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  +   A+         LH  I+K G  N+L + + ++ +Y K     +   LFD+M 
Sbjct: 44  YSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMP 103

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRML--LDNVRL--DHITFNSLLRACVQADDIE 179
            R+ V+WN++I+G    G N      F  M+   +N +L     T  ++L+AC       
Sbjct: 104 ERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSR 163

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G+ +H + +K+GF  + FVS + V +Y KCG ++ A   FD++  +D+V WN M++ YA
Sbjct: 164 IGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYA 223

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            NC  + AI +F  M LEG K +  TF  ++ +   +  S +GR  H  V+K    +DV 
Sbjct: 224 QNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVF 283

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           VAT+LVDMY+K  +I+D  R F  M+ +N+VS+N ++ G+   G   EA+++   +    
Sbjct: 284 VATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEG 343

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  T   + SSC   S   E  QVH +++K G+ + +S+ N+++N YSKCG    AL
Sbjct: 344 MEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSAL 403

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F S+  P+ V W  II  +A +G  ++++  F KM     + D  +   V+ A S   
Sbjct: 404 EAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWA 463

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            V +G R+ +  +    +       + + D+  + G++ +A  + + MP
Sbjct: 464 AVEQG-RHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMP 511



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 201/372 (54%), Gaps = 12/372 (3%)

Query: 124 MRVRNIVTWNTLIS-----GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           M   N+V W + I+     G+++        F +ML   +  + IT+++ + AC Q+   
Sbjct: 1   MLETNVVRWTSKITDNARRGLVD---QALSCFLQMLRAGIEPNAITYSATISACAQSTRP 57

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +   LH  ILK GF    FVSS L+ +Y K   +++AR +FD++  RD V WN M++ Y
Sbjct: 58  SLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGY 117

Query: 239 ALNCLGDGAIAVFNLM--RLEGMK--GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +   L + A  +F  M    E  K     FT ++++ +CG LG S++G+ +HG  +K  F
Sbjct: 118 SQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGF 177

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D D+ V+ S V MY K G +D A   FD +  K++V+WNTM+ G+ QN    EA++L   
Sbjct: 178 DSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQ 237

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M    F P++ T   +L +  ++S S   R  HA  +K G    + +  AL++ YSK   
Sbjct: 238 MELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYD 297

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           I    + FG + + +LV++ ++I  Y+  G  +E++ V+ ++ S  + PDS  F+ + S+
Sbjct: 298 IEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSS 357

Query: 475 CSHGGLVSEGLR 486
           CS    V+EG +
Sbjct: 358 CSVSSTVAEGAQ 369



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 4/174 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  +K  + +  ++QG+ LH+H+MK GL   + + + V+ +Y KC   +D +K+F  M  
Sbjct: 453 SSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPE 512

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N+V+WN++I+G    G        F+ M    +    +TF  +L AC  A  +E GR  
Sbjct: 513 KNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNF 572

Query: 185 HSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARR-VFDEVLCRDLVLWNVMVS 236
           ++ ++   G   +    + +VDL G+ G++E+A   +      ++  +W  ++S
Sbjct: 573 YNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLS 626



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 21/255 (8%)

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M   NVV W + +    + G   +A+     ML+    P+ +T ++ +S+C   +     
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
             +H   +K G    L + + LI+ YSK   I  A   F  + E D V+W S+I  Y+  
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 444 GLSKESIEVFEKMLSH----AVRPDSIAFLEVLSACSHGGL----VSEGLRYFNLMI--- 492
           GL++E+  +F  M++      +         VL AC  GGL    + + +  + + I   
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKAC--GGLGCSRIGKCVHGYAVKIGFD 178

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           SD  +   + +  C   +L   GL   A+D + +  I   +  +  +   C    +I L 
Sbjct: 179 SDLFVSGSTVYMYCKCGILDMAGL---AFDQIENKDIVAWNTMITGYAQNCYEEEAIELF 235

Query: 553 KWAAEKLLELEPSKP 567
                  +ELE  KP
Sbjct: 236 -----YQMELEGFKP 245


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/577 (33%), Positives = 330/577 (57%), Gaps = 11/577 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCK-AFDDMEKLFDE 123
           Y+  ++  +   F+  G+ +   +MK G   + + +   ++ ++VK + +F++  K+FD+
Sbjct: 169 YTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M   N+VTW  +I+  +  G       +F  M+L     D  T +S+  AC + +++ +G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKC---GFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           R+LHS+ ++ G   +  V  +LVD+Y KC   G V+D R+VFD +    ++ W  +++ Y
Sbjct: 289 RQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGY 346

Query: 239 ALNC-LGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             NC L   AI +F+ M  +G ++ ++FTFSS   +CG +   ++G+Q+ G   K+    
Sbjct: 347 MQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLAS 406

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  V+ S++ M+ K   ++DA   F+ ++ KN+VS+NT + G  +N D   A +LL ++ 
Sbjct: 407 NSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIA 466

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +        T AS+LS   ++    +  Q+H+  +K G+     + NALI+ YSKCGSI 
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSID 526

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  +   ++++WTS+I  +A HG ++  +E F +M    V+P+ + ++ +LSACS
Sbjct: 527 TASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACS 586

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLVSEG R+FN M  D+ I P  EHY C+ DLL R GLL +A++ + +MP +      
Sbjct: 587 HVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVW 646

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
             F+GAC+VH +  L K AA K+LE +P++P  Y  +SN+YAS   W +   +R+ M++ 
Sbjct: 647 RTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKER 706

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              K  GCSWIE+  ++H F   D SHP A  +Y  L
Sbjct: 707 NLVKEGGCSWIEVGDKVHKFYVGDTSHPNAHQIYDEL 743



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 189/336 (56%), Gaps = 13/336 (3%)

Query: 153 MLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           M  D +R +D +TF+SLL++C++A    +G+ +H+ +++     +  + ++L+ LY K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSG 111

Query: 212 FVEDARRVFDEV---LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
            +  A+ VF+ +     RD+V W+ M++C+  N     AI +F      G+  + + +++
Sbjct: 112 DLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTA 171

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGN-IDDACRVFDGMTA 326
           ++ +C       +GR I G ++K   F+ DV V  SL+DM+ K  N  ++A +VFD M+ 
Sbjct: 172 VIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            NVV+W  M+    Q G  REA++   DM+   F  D+ TL+S+ S+C  L      RQ+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQL 291

Query: 387 HAYAIKNGVQAFLSIENALINAYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           H++AI++G+     +E +L++ Y+KC   GS+    + F  +++  +++WT++I  Y  +
Sbjct: 292 HSWAIRSGLAD--DVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQN 349

Query: 444 -GLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSH 477
             L+ E+I +F +M++   V P+   F     AC +
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 16/334 (4%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S A K        + GKQ+  H  K GL +  S+ N V+ ++VKC   +D    F+
Sbjct: 373 HFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFE 432

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR-----LDHITFNSLLRACVQADD 177
            +  +N+V++NT + G      N+       LL  +      +   TF SLL        
Sbjct: 433 SLSEKNLVSYNTFLDGTCR---NLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGS 489

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +  G ++HS +LK+G   N  V +AL+ +Y KCG ++ A RVF  +  R+++ W  M++ 
Sbjct: 490 LRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITG 549

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDL 296
           +A +   +  +  FN M  EG+K +  T+ +++++C  +G    G R  + +        
Sbjct: 550 FAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            +     +VD+  + G + DA    + M  + +V+ W T +     + +        R +
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKI 669

Query: 356 LQGSFCPDE----VTLASILSSCGSLSISCETRQ 385
           L+  F P+E    + L++I +S G    S E R+
Sbjct: 670 LE--FDPNEPAAYIQLSNIYASAGKWEESTEMRR 701



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 123/238 (51%), Gaps = 6/238 (2%)

Query: 246 GAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           GA++  +LM  +G++  D  TFSSL+ SC      +LG+ +H  +I+   + D ++  SL
Sbjct: 44  GAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSL 103

Query: 305 VDMYAKNGNIDDACRVFDGM---TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           + +Y+K+G++  A  VF+ M     ++VVSW+ M+  FG NG   +A+KL  + L+    
Sbjct: 104 ISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLV 163

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKC-GSIAGAL 419
           P++    +++ +C +       R +  + +K G  ++ + +  +LI+ + K   S   A 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           + F  + E ++VTWT +I      G  +E+I  F  M+      D      V SAC+ 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 343 GDGREAVKLLRDMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           GD R AV  L  M +    P D VT +S+L SC         + VHA  I+  ++    +
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVL 99

Query: 402 ENALINAYSKCGSIAGALQCF---GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            N+LI+ YSK G +  A   F   G   + D+V+W++++  +  +G   ++I++F + L 
Sbjct: 100 YNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLE 159

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
             + P+   +  V+ ACS+   V  G      ++   H   D
Sbjct: 160 MGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESD 201


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 311/574 (54%), Gaps = 2/574 (0%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+   +  A     + G QLH H +K    + + +    L +Y KC    D  KLF
Sbjct: 257 SQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLF 316

Query: 122 DEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             +   N+ ++N +I G      G      F ++  ++   D ++ +  L A        
Sbjct: 317 SLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHS 376

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH   +K     N  V++A++D+YGKCG + +A  +FDE+  RD V WN +++   
Sbjct: 377 EGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACE 436

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N      ++ F  M    M+ D FT+ S++ +C    +   G ++HG +IK    L + 
Sbjct: 437 QNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMF 496

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V ++LVDMY+K G +++A ++   +  + +VSWN ++ GF       ++ +    ML+  
Sbjct: 497 VGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMG 556

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  T A++L +C +L+     +Q+HA  IK  + + + I + L++ YSKCG++  +L
Sbjct: 557 VEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSL 616

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F    + D VTW ++I  +A+HGL +E++E+FE ML   ++P+   F+ VL ACSH G
Sbjct: 617 LMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVG 676

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
              +GL YF  M S Y + P  EHY+C+ D+LGR G + EA  L+  MP E  +      
Sbjct: 677 NAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTL 736

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  CK+ G++ +A+ AA  LL+L+P     Y L+SN+YA    W  V+++R+ MR +   
Sbjct: 737 LSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLK 796

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K PGCSWIE+  E+HTF+  D++HP+   +Y++L
Sbjct: 797 KEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLL 830



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 154/566 (27%), Positives = 270/566 (47%), Gaps = 75/566 (13%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK+ H+H++  G    + + N ++ +YVKC A +   K+F+EM  R+IV+WNT++ G
Sbjct: 40  LKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFG 99

Query: 139 IINCG---------------GNVTPY-------------------FRRMLLDNVRLDHIT 164
               G               G+V  +                   F +M    V  DH T
Sbjct: 100 CAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTT 159

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
               L+ C   +D  +G ++H   +++GF  +    SALVD+Y KC  +ED+  VF E+ 
Sbjct: 160 LAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELP 219

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            ++ + W+  ++    N      + +F  M+ +G+     T++S+  SC  L +S+LG Q
Sbjct: 220 DKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQ 279

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H   +K  F  DV+V T+ +DMYAK  N+ DA ++F  +   N+ S+N M++G+ +N  
Sbjct: 280 LHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQ 339

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G +A KL   + + SF  DEV+L+  LS+   +    E  Q+H  AIK+ + + + + NA
Sbjct: 340 GFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANA 399

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +++ Y KCG++  A   F  ++  D V+W +II A   +    +++  F  ML   + PD
Sbjct: 400 ILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPD 459

Query: 465 SIAFLEVLSACS-----------HGGLVSE--GLRYF-----NLMISDYHILPDSE--HY 504
              +  VL AC+           HG ++    GL+ F       M S   ++ ++E  HY
Sbjct: 460 EFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHY 519

Query: 505 TCLTDLLGRVGLLVEAYDL-------------LASMPIEPRSDTLGAFIGACKVHGSIGL 551
                 +     ++  + L             +  M +EP + T    +  C    ++GL
Sbjct: 520 RLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGL 579

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVY 577
            K    ++++LE        L+S+VY
Sbjct: 580 GKQIHAQMIKLE--------LLSDVY 597



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 245/526 (46%), Gaps = 21/526 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H+  + +LK+ +       G Q+H   +++G    +   + ++ +Y KC + +D   +F 
Sbjct: 157 HTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFS 216

Query: 123 EMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           E+  +N ++W+  I+G +     +     F+ M    + +   T+ S+ R+C       +
Sbjct: 217 ELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRL 276

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G +LH   LK  FG +  V +A +D+Y KC  + DA ++F  +   +L  +N M+  YA 
Sbjct: 277 GTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYAR 336

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N  G  A  +F  ++      D  + S  +++   +     G Q+HGL IK +   ++ V
Sbjct: 337 NEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICV 396

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           A +++DMY K G + +A  +FD M  ++ VSWN ++    QN    + +     ML+   
Sbjct: 397 ANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKM 456

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PDE T  S+L +C          +VH   IK+G+   + + +AL++ YSKCG +  A +
Sbjct: 457 EPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEK 516

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
               ++E  +V+W +II  ++    S++S   F  ML   V PD+  +  VL  C++   
Sbjct: 517 IHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLAT 576

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD--TLGA 538
           V  G +    MI    +L D    + L D+  + G +   +D L      P+ D  T  A
Sbjct: 577 VGLGKQIHAQMIK-LELLSDVYITSTLVDMYSKCGNM---HDSLLMFRKAPKRDSVTWNA 632

Query: 539 FIGACKVHGSIGLAKWAAEKLLEL------EPSKPVNYALVSNVYA 578
            I     HG         E+ LEL      E  KP +   VS + A
Sbjct: 633 MICGFAYHG-------LGEEALELFEHMLHENIKPNHATFVSVLRA 671



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 220/455 (48%), Gaps = 39/455 (8%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF+ + + C     ++ G+  H+ ++  GF    FV++ L+ +Y KC  +E A +VF+E+
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 224 LCRDLVLWNVMV--------------------------------SCYALNCLGDGAIAVF 251
             RD+V WN MV                                S Y  N     +IAVF
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             MR  G+  D+ T +  +  C  L    LG QIHG+ ++  FD DV+  ++LVDMYAK 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            +++D+  VF  +  KN +SW+  + G  QN      +KL ++M +      + T AS+ 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            SC  LS S    Q+H +A+K    + + +  A ++ Y+KC +++ A + F  + + +L 
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           ++ ++I  YA +    ++ ++F ++  ++   D ++    LSA +     SEGL+   L 
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLA 385

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI-EPRSDTLGAFIGACKVHGSIG 550
           I   ++  +      + D+ G+ G LVEA  L   M I +P S    A I AC+ + S G
Sbjct: 386 IKS-NLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVS--WNAIITACEQNESEG 442

Query: 551 --LAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
             L+ + A    ++EP +   Y  V    A +R +
Sbjct: 443 KTLSHFGAMLRSKMEPDE-FTYGSVLKACAGQRAF 476


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 307/549 (55%), Gaps = 5/549 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q KQ+H+ ++ LGL     L  +++H            ++FD++    I  WN +I G  
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             N   +    +  M L  V  D  TF  LL+AC     +++GR +H+ + ++GF  + F
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
           V + L+ LY KC  +  AR VF+ +    R +V W  +VS YA N     A+ +F+ MR 
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRK 215

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +K D+    S++N+   L   K GR IH  V+K   +++  +  SL  MYAK G +  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +FD M + N++ WN M+ G+ +NG  REA+ +  +M+     PD +++ S +S+C  
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +    + R ++ Y  ++  +  + I +ALI+ ++KCGS+ GA   F    + D+V W+++
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  Y  HG ++E+I ++  M    V P+ + FL +L AC+H G+V EG  +FNLM +D+ 
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHK 454

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  +HY C+ DLLGR G L +AY+++  MP++P     GA + ACK H  + L ++AA
Sbjct: 455 INPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAA 514

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           ++L  ++PS   +Y  +SN+YA+ R W  VA +R  M++   +K  GCSW+E+ G +  F
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAF 574

Query: 617 VSSDRSHPQ 625
              D+SHP+
Sbjct: 575 RVGDKSHPR 583


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/478 (38%), Positives = 278/478 (58%), Gaps = 1/478 (0%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S+L++CV +  +  GR+LH  +L  G G +  +S+ LVDLY  CG V  ARR+FD +  
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R++ LWNV++  YA     + A+ ++  M   G++ D FT+  ++ +C  L   + GR++
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  V    +  DV V   +VDMYAK G +DDA  VFDG+  ++ V WN+M+  +GQNG  
Sbjct: 186 HQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRP 245

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+ L RDM      P   TL S +S+    +     R++H +  + G      ++ +L
Sbjct: 246 MEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSL 305

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPD 464
           ++ Y+K G +  A   F  + + +LV+W ++I  Y  HG + E++ +F KM   A V PD
Sbjct: 306 VDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPD 365

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           +I F+ VLSAC+HGG+V E   +F LM++ Y I P  +HYTC+ D+LG  G   EAYDL+
Sbjct: 366 NITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLI 425

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             M IEP S   GA +  CK+H ++ L + A +KL+ELEP    NY  +SN+YA    W 
Sbjct: 426 KGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWE 485

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
             AR+RK+M +    K+  CSWIE+ G+ H F+  D SHP++  +Y  L  + GLM +
Sbjct: 486 KAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSD 543



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 192/395 (48%), Gaps = 13/395 (3%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S+  A+  ++  L+     G L+ G+QLH  ++  GL     L  +++ +Y  C      
Sbjct: 57  SSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHA 116

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            +LFD M  RN+  WN LI      G        +R M+   V  D+ T+  +L+AC   
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAAL 176

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D+E GR +H  +    +G + FV + +VD+Y KCG V+DAR VFD +  RD V+WN M+
Sbjct: 177 LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMI 236

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + Y  N     A+A+   M   G+     T  S V++     +   GR++HG   ++ F 
Sbjct: 237 AAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFG 296

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           L   + TSLVDMYAK+G +  A  +F+ +  + +VSWN M+ G+G +G   EA+ L   M
Sbjct: 297 LQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKM 356

Query: 356 L-QGSFCPDEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAY 409
                  PD +T   +LS+C    +  E ++     V+AY+IK  VQ +  +    I+  
Sbjct: 357 KGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCV----IDVL 412

Query: 410 SKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFH 443
              G    A     G   EPD   W +++     H
Sbjct: 413 GHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIH 447



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           RL      Y   +S++ SC   GS + GRQ+HG ++      D +++T LVD+YA  G +
Sbjct: 54  RLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQV 113

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
             A R+FDGM  +NV  WN ++  + + G    AV+L R M++    PD  T   +L +C
Sbjct: 114 GHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKAC 173

Query: 375 GSLSISCET-RQVHAY--AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +L +  ET R+VH      + G   F+     +++ Y+KCG +  A   F  +   D V
Sbjct: 174 AAL-LDLETGREVHQRVSGTRWGQDVFVCA--GVVDMYAKCGCVDDARAVFDGIAVRDAV 230

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
            W S+I AY  +G   E++ +   M ++ + P +IA L
Sbjct: 231 VWNSMIAAYGQNGRPMEALALCRDMAANGIGP-TIATL 267


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 310/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L +G QLHSH +K G+   + L+  +L +Y KC   +   K F      NI
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENI 428

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G ++   +    FR+M ++ +  +  T+ S+LR C     + +G ++H+ 
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K GF LN +V S L+D+Y K G +  A R+   +   D+V W  M++ Y  + +   A
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M   G++ D   F+S +++C  + + + G+QIH       F  D+ +  +L+ +
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G I +A   F+ +  KN +SWN++V G  Q+G   EA+++   ML+     +  T 
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTY 668

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  SL+   + +Q+H+  +K G  +   + N+LI+ Y+K GSI+ A + F  + E
Sbjct: 669 GSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE 728

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            ++++W ++I  Y+ HG   E++ +FE+M    + P+ + F+ VLSACSH GLV EGL Y
Sbjct: 729 RNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDY 788

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M   + ++P SEHY C+ DLLGR G L  A + +  MPI   +      + AC +H 
Sbjct: 789 FESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHK 848

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + + AA  LLELEP     Y L+SN+YA  R W      RK+M+D    K PG SWI
Sbjct: 849 NIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWI 908

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F + D+ HP    +Y  +
Sbjct: 909 EVKNAVHAFYAGDKLHPLTNQIYEYI 934



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 135/394 (34%), Positives = 217/394 (55%), Gaps = 4/394 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L  S K    + G+QLH  ++K G  ++  + N ++ +Y + +     E++F  M  
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNS 324

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ V++N+LISG++  G        F +M  D ++ D IT  SLL AC     +  G +L
Sbjct: 325 RDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCL 243
           HS  +K G   +  +  +L+DLY KC  VE A + F      ++VLWNVM+  Y  L+ L
Sbjct: 385 HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNL 444

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D +  +F  M++EGM  + FT+ S++ +C +LG+  LG QIH  VIK  F L+V V + 
Sbjct: 445 SD-SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSV 503

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G +  A R+   +   +VVSW  M+ G+ Q+    EA++L  +M       D
Sbjct: 504 LIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFD 563

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +  AS +S+C  +    + +Q+HA +   G  A LSI NALI+ Y++CG I  A   F 
Sbjct: 564 NIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFE 623

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + + + ++W S++   A  G  +E+++VF +ML
Sbjct: 624 KIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 210/396 (53%), Gaps = 2/396 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           KQ+HS     G  +   + N ++ +Y K    +  +K+F+ + +++IVTW  +ISG+   
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        F  M    +       +S+L A  +    E+G +LH  ++K GF    +V 
Sbjct: 240 GLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVC 299

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + LV LY +   +  A R+F  +  RD V +N ++S        D A+ +F  M+ + +K
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  T +SL+++C ++G+   G Q+H   IK     D+++  SL+D+Y+K  +++ A + 
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F     +N+V WN M+V +GQ  +  ++ ++ R M      P++ T  SIL +C SL   
Sbjct: 420 FLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
               Q+H + IK G Q  + + + LI+ Y+K G +A AL+    + E D+V+WT++I  Y
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             H +  E++++FE+M    ++ D+I F   +SAC+
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA 575



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 249/506 (49%), Gaps = 15/506 (2%)

Query: 35  TNAQKHDRSVLSSQLRNSGTIH-------ESTHSAHSFYSQALKVSAKFGFLQQGKQLHS 87
           TN+   D++ L  +   S  I            S +  Y   L+     G L +  +LH 
Sbjct: 23  TNSHSFDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHC 82

Query: 88  HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT 147
            I K G   +  L + ++  Y +        K+FDE   R++ +WN +I   +    N  
Sbjct: 83  RISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQ 142

Query: 148 PY--FRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGFGLNCFVSSALV 204
            +  FRRML + +  +  TF  +L+ACV  D      +++HS     GF  +  V++ L+
Sbjct: 143 VFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLI 202

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           DLY K G++E A++VF+ +  +D+V W  M+S  + N L + AI +F  M    +    +
Sbjct: 203 DLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPY 262

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
             SS++++   +   +LG Q+H LVIK  F  +  V   LV +Y+++  +  A R+F  M
Sbjct: 263 VLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
            +++ VS+N+++ G  Q G    A++L   M +    PD +T+AS+LS+C S+    +  
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q+H++AIK G+ A + +E +L++ YSKC  +  A + F + +  ++V W  ++ AY    
Sbjct: 383 QLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLD 442

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
              +S E+F +M    + P+   +  +L  C+  G +  G +    +I     L     Y
Sbjct: 443 NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL---NVY 499

Query: 505 TC--LTDLLGRVGLLVEAYDLLASMP 528
            C  L D+  + G L  A  +L  +P
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLP 525



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 208/409 (50%), Gaps = 30/409 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+     G L  G+Q+H+H++K G    + + + ++ +Y K        ++   + 
Sbjct: 466 YPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W  +I+G +  +        F  M    ++ D+I F S + AC     +  G++
Sbjct: 526 EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ 585

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+     GFG +  +++AL+ LY +CG +++A   F+++  ++ + WN +VS  A +  
Sbjct: 586 IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGY 645

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ VF  M     + + FT+ S +++  +L + K G+QIH +V+K  +D +  V+ S
Sbjct: 646 FEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNS 705

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ +YAK+G+I DA R F+ M+ +NV+SWN M+ G+ Q+G G EA++L  +M      P+
Sbjct: 706 LISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPN 765

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYSK 411
            VT   +LS+C  + +           +K G+  F S+               +++   +
Sbjct: 766 HVTFVGVLSACSHIGL-----------VKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGR 814

Query: 412 CGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            G +  A++    +  P D + W +++ A   H    ++IE+ E+   H
Sbjct: 815 AGQLDRAMEYIKEMPIPADAMIWRTLLSACVIH----KNIEIGERAAHH 859


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 307/556 (55%), Gaps = 7/556 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G ++H   +K G    + +   ++H+Y +  A  +   LFDEM  R++ +WN +ISG   
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 142 CGGNVTPYFRRMLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            G          L D +R +D +T  SLL AC +A D   G  +HS+ +K G     FVS
Sbjct: 229 SGNAKEAL---TLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS 285

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + L+DLY + G ++D ++VFD +  RDL+ WN ++  Y LN     AI +F  MRL  ++
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQ 345

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACR 319
            D  T  SL +    LG  +  R + G  +++ + L D+ +  ++V MYAK G +D A  
Sbjct: 346 PDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSSCGSL 377
           VF+ +  K+V+SWNT++ G+ QNG   EA+++   M +  G    ++ T  S+L +C   
Sbjct: 406 VFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQA 465

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
               +  ++H   +KNG+   + +  +L + Y KCG +  AL  F  +   + V W ++I
Sbjct: 466 GALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLI 525

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             + FHG  ++++ +F++ML   V+PD I F+ +LSACSH GLV EG   F +M +DY I
Sbjct: 526 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGI 585

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  +HY C+ DL GR G L  A + + SMP++P +   GA + AC+VHG++ L K A+E
Sbjct: 586 TPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASE 645

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            L E+EP     + L+SN+YAS   W  V  +R +       K PG S +E+  ++  F 
Sbjct: 646 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFY 705

Query: 618 SSDRSHPQAVHMYAML 633
           + +++HP    MY  L
Sbjct: 706 TGNQTHPMYEEMYREL 721



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 233/460 (50%), Gaps = 22/460 (4%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ  K LH+ ++       + +  +++++Y            FD +  R++  WN +ISG
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 139 IINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
               G +   +  +   ML   ++ D+ TF S+L+AC    D   G ++H   LK GF  
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMW 183

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + +V+++L+ LY + G V +AR +FDE+  RD+  WN M+S Y   C    A     L  
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGY---CQSGNAKEALTLS- 239

Query: 256 LEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            +G++  D  T  SL+++C   G    G  IH   IK   + ++ V+  L+D+YA+ G++
Sbjct: 240 -DGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT---LASIL 371
            D  +VFD M  ++++SWN+++  +  N     A+ L ++M      PD +T   LASIL
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 372 SSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           S  G +  +C  R V  + ++ G     ++I NA++  Y+K G +  A   F  +   D+
Sbjct: 359 SQLGEIR-AC--RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDV 415

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHA--VRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           ++W +II  YA +G + E+IE++  M      +  +   ++ VL ACS  G + +G++  
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLH 475

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             ++ +   L D    T L D+ G+ G L +A  L   +P
Sbjct: 476 GRLLKNGLYL-DVFVGTSLADMYGKCGRLDDALSLFYQIP 514



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 215/418 (51%), Gaps = 23/418 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    + G   +G  +HS+ +K GL ++L + N+++ +Y +  +  D +K+FD M VR++
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDL 313

Query: 130 VTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++WN++I        N  P      F+ M L  ++ D +T  SL     Q  +I   R +
Sbjct: 314 ISWNSIIKAY---ELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSV 370

Query: 185 HSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
             F L+ G+ L +  + +A+V +Y K G V+ AR VF+ +  +D++ WN ++S YA N  
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGF 430

Query: 244 GDGAIAVFNLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              AI ++N+M  EG  +  +  T+ S++ +C   G+ + G ++HG ++K    LDV V 
Sbjct: 431 ASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVG 490

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           TSL DMY K G +DDA  +F  +   N V WNT++   G +G G +AV L ++ML     
Sbjct: 491 TSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVK 550

Query: 362 PDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           PD +T  ++LS+C    +  E            G+   L     +++ Y + G +  AL 
Sbjct: 551 PDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALN 610

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHG---LSKESIE-VFEKMLSHAVRPDSIAFLEVLS 473
              S+  +PD   W +++ A   HG   L K + E +FE      V P+ + +  +LS
Sbjct: 611 FIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFE------VEPEHVGYHVLLS 662



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 172/320 (53%), Gaps = 17/320 (5%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           ++L R C    +++  + LH+ ++      N  +S+ LV+LY   G V  AR  FD +  
Sbjct: 58  HTLFRYCT---NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHN 114

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           RD+  WN+M+S Y         I  F+L  L  G++ DY TF S++ +C  +     G +
Sbjct: 115 RDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNK 171

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  F  DV VA SL+ +Y + G + +A  +FD M  +++ SWN M+ G+ Q+G+
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGN 231

Query: 345 GREAVKL---LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
            +EA+ L   LR M       D VT+ S+LS+C           +H+Y+IK+G+++ L +
Sbjct: 232 AKEALTLSDGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            N LI+ Y++ GS+    + F  +   DL++W SII AY  +     +I +F++M    +
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRI 344

Query: 462 RPDSIAFLEVLSACSHGGLV 481
           +PD +  + + S  S  G +
Sbjct: 345 QPDCLTLISLASILSQLGEI 364


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 317/564 (56%), Gaps = 4/564 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L  + K   L  G+Q+H   +KLGL   L++ N ++++Y K + F     +FD M  R++
Sbjct: 322 LATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDL 381

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRRLHS 186
           ++WN++I+GI   G  V     F ++L   ++ D  T  S+L+A     + + + +++H 
Sbjct: 382 ISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHV 441

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             +K+    + FVS+AL+D Y +   +++A  +F E    DLV WN M++ Y  +  G  
Sbjct: 442 HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHK 500

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            + +F LM  +G + D FT +++  +CG L +   G+Q+H   IK  +DLD+ V++ ++D
Sbjct: 501 TLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 560

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K G++  A   FD +   + V+W TM+ G  +NG+   A  +   M      PDE T
Sbjct: 561 MYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFT 620

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +A++  +   L+   + RQ+HA A+K        +  +L++ Y+KCGSI  A   F  ++
Sbjct: 621 IATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 680

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++  W +++   A HG  KE++++F++M S  ++PD + F+ VLSACSH GLVSE  +
Sbjct: 681 MMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYK 740

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +   M  DY I P+ EHY+CL D LGR GL+ +A +L+ SM +E  +      + AC+V 
Sbjct: 741 HMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQ 800

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G     K  A KLLELEP     Y L+SN+YA+   W ++   R MM+ +   K PG SW
Sbjct: 801 GDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSW 860

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMY 630
           IE+  +IH FV  DRS+ Q   +Y
Sbjct: 861 IEVKNKIHIFVVDDRSNRQTELIY 884



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 194/359 (54%), Gaps = 6/359 (1%)

Query: 122 DEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D   V  I+  N  +S  ++ G    +   F  M+  +V  D +TF  +L   V+ D + 
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLA 332

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G+++H   LK+G  L   VS++L+++Y K      AR VFD +  RDL+ WN +++  A
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDV 298
            N L   A+ +F  +   G+K D +T +S++ +  +L     L +Q+H   IK +   D 
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V+T+L+D Y++N  + +A  +F+     ++V+WN M+ G+ Q+ DG + +KL   M + 
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQ 511

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               D+ TLA++  +CG L    + +QVHAYAIK+G    L + + +++ Y KCG ++ A
Sbjct: 512 GERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAA 571

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD--SIAFLEVLSAC 475
              F S+  PD V WT++I     +G  + +  VF +M    V PD  +IA L   S+C
Sbjct: 572 QFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSC 630



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 188/426 (44%), Gaps = 51/426 (11%)

Query: 76  FGFLQQ---------GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           FGFL+          GK  H+ I+      +  L N ++ +Y KC +     ++FD+M  
Sbjct: 43  FGFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPD 102

Query: 127 RNIVTWNTLISGIINCGGNVTP-------YFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           R++V+WN++++        V          FR +  D V    +T + +L+ C+ +  + 
Sbjct: 103 RDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVW 162

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
                H +  K+G   + FV+ ALV++Y K G V++ + +F+E+  RD+VLWN+M+  Y 
Sbjct: 163 ASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYL 222

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                + AI + +     G+  +  T   L    G                    D D  
Sbjct: 223 EMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGD-------------------DSDAG 263

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
              S       NGN        D  +   ++  N  +  +  +G     +K   DM++  
Sbjct: 264 QVKSFA-----NGN--------DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESD 310

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D+VT   +L++   +      +QVH  A+K G+   L++ N+LIN Y K      A 
Sbjct: 311 VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F ++ E DL++W S+I   A +GL  E++ +F ++L   ++PD      VL A S   
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS-- 428

Query: 480 LVSEGL 485
            + EGL
Sbjct: 429 -LPEGL 433



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 189/429 (44%), Gaps = 52/429 (12%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  LK+    G++   +  H +  K+GL     +   ++++Y+K     + + LF+EM  
Sbjct: 149 SPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPY 208

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLD--------NVRLDHITFNSLLRACVQADDI 178
           R++V WN ++   +  G      F+   +D         +  + IT   L R  +  DD 
Sbjct: 209 RDVVLWNLMLKAYLEMG------FKEEAIDLSSAFHSSGLNPNEITLRLLAR--ISGDDS 260

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           + G+            +  F +              DA  V       +++  N  +S Y
Sbjct: 261 DAGQ------------VKSFANG------------NDASSV------SEIIFRNKGLSEY 290

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             +      +  F  M    ++ D  TF  ++ +   + S  LG+Q+H + +K   DL +
Sbjct: 291 LHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLML 350

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V+ SL++MY K      A  VFD M+ ++++SWN+++ G  QNG   EAV L   +L+ 
Sbjct: 351 TVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC 410

Query: 359 SFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIK--NGVQAFLSIENALINAYSKCGSI 415
              PD+ T+ S+L +  SL      ++QVH +AIK  N   +F+S   ALI+AYS+   +
Sbjct: 411 GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDAYSRNRCM 468

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F      DLV W +++  Y       +++++F  M     R D      V   C
Sbjct: 469 KEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC 527

Query: 476 SHGGLVSEG 484
                +++G
Sbjct: 528 GFLFAINQG 536


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 322/581 (55%), Gaps = 10/581 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL    +   L  G+ LH  ++  GL  ++ L N ++ +Y KC   D    LFD   
Sbjct: 151 YAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCD 210

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRAC---VQADDIEV 180
            R+ V+WN+LISG +  G    P     +M  D + L      S+L+AC   +    IE 
Sbjct: 211 ERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEK 270

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-A 239
           G  +H +  K+G   +  V +AL+D+Y K G +++A ++F  +  +++V +N M+S +  
Sbjct: 271 GMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQ 330

Query: 240 LNCLGDGA----IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           ++ + D A      +F  M+  G++    TFS ++ +C    + + GRQIH L+ K +F 
Sbjct: 331 MDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQ 390

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  + ++L+++YA  G+ +D  + F   + +++ SW +M+    QN     A  L R +
Sbjct: 391 SDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQL 450

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 P+E T++ ++S+C   +      Q+  YAIK+G+ AF S++ + I+ Y+K G++
Sbjct: 451 FSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNM 510

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A Q F  V+ PD+ T++++I + A HG + E++ +FE M +H ++P+  AFL VL AC
Sbjct: 511 PLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIAC 570

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
            HGGLV++GL+YF  M +DY I P+ +H+TCL DLLGR G L +A +L+ S   +    T
Sbjct: 571 CHGGLVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVT 630

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             A + +C+V+    + K  AE+L+ELEP    +Y L+ N+Y           +R++MRD
Sbjct: 631 WRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRD 690

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
               K P  SWI I  + H+F  +D SHP +  +Y ML T+
Sbjct: 691 RGVKKEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLETM 731



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/528 (28%), Positives = 250/528 (47%), Gaps = 46/528 (8%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    + +AK G +  GK  H H++K  L   L L N +L++Y KC+      +LFD M 
Sbjct: 50  YKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMP 109

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RNI+++N+LISG    G        F      N++LD  T+   L  C +  D+++G  
Sbjct: 110 ERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGEL 169

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  ++  G     F+ + L+D+Y KCG ++ A  +FD    RD V WN ++S Y     
Sbjct: 170 LHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGA 229

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG---TLGSSKLGRQIHGLVIKQSFDLDVLV 300
            +  + +   M  +G+    +   S++ +C      G  + G  IH    K   + D++V
Sbjct: 230 AEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVV 289

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----GREAVKLLRDM 355
            T+L+DMYAKNG++ +A ++F  M +KNVV++N M+ GF Q  +       EA KL  DM
Sbjct: 290 RTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDM 349

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            +    P   T + +L +C +       RQ+HA   KN  Q+   I +ALI  Y+  GS 
Sbjct: 350 QRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGST 409

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
              +QCF S  + D+ +WTS+I  +  +   + + ++F ++ S  +RP+      ++SAC
Sbjct: 410 EDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSAC 469

Query: 476 S-----------HGGLVSEGLRYF---------------NLMISDYHIL----PDSEHYT 505
           +            G  +  G+  F               N+ +++   +    PD   Y+
Sbjct: 470 ADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYS 529

Query: 506 CLTDLLGRVGLLVEAYDLLASMP---IEPRSDT-LGAFIGACKVHGSI 549
            +   L + G   EA ++  SM    I+P     LG  I  C  HG +
Sbjct: 530 AMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACC--HGGL 575



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 174/370 (47%), Gaps = 15/370 (4%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N  LD   +  L +   ++  + +G+  H  ++K       ++ + L+++Y KC  +  A
Sbjct: 42  NTALDSEGYKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFA 101

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R++FD +  R+++ +N ++S Y      + A+ +F   R   +K D FT++  +  CG  
Sbjct: 102 RQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGER 161

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
               LG  +HGLV+       V +   L+DMY+K G +D A  +FD    ++ VSWN+++
Sbjct: 162 CDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLI 221

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC------GSLSISCETRQVHAYA 390
            G+ + G   E + LL  M +         L S+L +C      G +    +   +H Y 
Sbjct: 222 SGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIE---KGMAIHCYT 278

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY-----AFHGL 445
            K G++  + +  AL++ Y+K GS+  A++ F  +   ++VT+ ++I  +          
Sbjct: 279 AKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEA 338

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
           S E+ ++F  M    + P    F  VL ACS    +  G R  + +I   +   D    +
Sbjct: 339 SSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYG-RQIHALICKNNFQSDEFIGS 397

Query: 506 CLTDLLGRVG 515
            L +L   +G
Sbjct: 398 ALIELYALMG 407



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 13/262 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +S  LK  +    L+ G+Q+H+ I K    +   + + ++ +Y    + +D  + F  
Sbjct: 359 STFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFAS 418

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
              ++I +W ++I   +      + +  FR++   ++R +  T + ++ AC     +  G
Sbjct: 419 TSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSG 478

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++  + +K G      V ++ + +Y K G +  A +VF EV   D+  ++ M+S  A +
Sbjct: 479 EQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQH 538

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A+ +F  M+  G+K +   F  ++ +C        G    GL   Q    D  + 
Sbjct: 539 GSANEALNIFESMKTHGIKPNQQAFLGVLIAC-----CHGGLVTQGLKYFQCMKNDYRIN 593

Query: 302 ------TSLVDMYAKNGNIDDA 317
                 T LVD+  + G + DA
Sbjct: 594 PNEKHFTCLVDLLGRTGRLSDA 615


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 310/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L +G QLHSH +K G+   + L+  +L +Y KC   +   K F      NI
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENI 428

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G ++   +    FR+M ++ +  +  T+ S+LR C     + +G ++H+ 
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           ++K GF LN +V S L+D+Y K G +  A R+   +   D+V W  M++ Y  + +   A
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M   G++ D   F+S +++C  + + + G+QIH       F  D+ +  +L+ +
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G I +A   F+ +  KN +SWN++V G  Q+G   EA+++   ML+     +  T 
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTY 668

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  SL+   + +Q+H+  +K G  +   + N+LI+ Y+K GSI+ A + F  + E
Sbjct: 669 GSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE 728

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            ++++W ++I  Y+ HG   E++ +FE+M    + P+ + F+ VLSACSH GLV EGL Y
Sbjct: 729 RNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDY 788

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M   + ++P SEHY C+ DLLGR G L  A + +  MPI   +      + AC +H 
Sbjct: 789 FESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHK 848

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + + AA  LLELEP     Y L+SN+YA  R W      RK+M+D    K PG SWI
Sbjct: 849 NIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWI 908

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F + D+ HP    +Y  +
Sbjct: 909 EVKNAVHAFYAGDKLHPLTNQIYEYI 934



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 135/394 (34%), Positives = 217/394 (55%), Gaps = 4/394 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L  S K    + G+QLH  ++K G  ++  + N ++ +Y + +     E++F  M  
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNS 324

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ V++N+LISG++  G        F +M  D ++ D IT  SLL AC     +  G +L
Sbjct: 325 RDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCL 243
           HS  +K G   +  +  +L+DLY KC  VE A + F      ++VLWNVM+  Y  L+ L
Sbjct: 385 HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNL 444

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D +  +F  M++EGM  + FT+ S++ +C +LG+  LG QIH  VIK  F L+V V + 
Sbjct: 445 SD-SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSV 503

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G +  A R+   +   +VVSW  M+ G+ Q+    EA++L  +M       D
Sbjct: 504 LIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFD 563

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +  AS +S+C  +    + +Q+HA +   G  A LSI NALI+ Y++CG I  A   F 
Sbjct: 564 NIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFE 623

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + + + ++W S++   A  G  +E+++VF +ML
Sbjct: 624 KIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 210/396 (53%), Gaps = 2/396 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           KQ+HS     G  +   + N ++ +Y K    +  +K+F+ + +++IVTW  +ISG+   
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        F  M    +       +S+L A  +    E+G +LH  ++K GF    +V 
Sbjct: 240 GLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVC 299

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + LV LY +   +  A R+F  +  RD V +N ++S        D A+ +F  M+ + +K
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  T +SL+++C ++G+   G Q+H   IK     D+++  SL+D+Y+K  +++ A + 
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F     +N+V WN M+V +GQ  +  ++ ++ R M      P++ T  SIL +C SL   
Sbjct: 420 FLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
               Q+H + IK G Q  + + + LI+ Y+K G +A AL+    + E D+V+WT++I  Y
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             H +  E++++FE+M    ++ D+I F   +SAC+
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA 575



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 248/506 (49%), Gaps = 15/506 (2%)

Query: 35  TNAQKHDRSVLSSQLRNSGTIH-------ESTHSAHSFYSQALKVSAKFGFLQQGKQLHS 87
           TN+   D++ L  +   S  I            S +  Y   L+     G L +  +LH 
Sbjct: 23  TNSHSFDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHC 82

Query: 88  HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT 147
            I K G   +  L + ++  Y +        K+FDE   R++ +WN +I   +    N  
Sbjct: 83  RISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQ 142

Query: 148 PY--FRRMLLDNVRLDHITFNSLLRACVQAD-DIEVGRRLHSFILKVGFGLNCFVSSALV 204
            +  FRRML + +  +  TF  +L+ACV  D      +++HS     GF  +  V++ L+
Sbjct: 143 VFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLI 202

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           DLY K G++E A++VF+ +  +D+V W  M+S  + N L + AI +F  M    +    +
Sbjct: 203 DLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPY 262

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
             SS++++   +   +LG Q+H LVIK  F  +  V   LV +Y+++  +  A R+F  M
Sbjct: 263 VLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
            +++ VS+N+++ G  Q G    A++L   M +    PD +T+AS+LS+C S+    +  
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q+H++AIK G+ A + +E +L++ YSKC  +  A + F   +  ++V W  ++ AY    
Sbjct: 383 QLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLD 442

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
              +S E+F +M    + P+   +  +L  C+  G +  G +    +I     L     Y
Sbjct: 443 NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL---NVY 499

Query: 505 TC--LTDLLGRVGLLVEAYDLLASMP 528
            C  L D+  + G L  A  +L  +P
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLP 525



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 208/409 (50%), Gaps = 30/409 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+     G L  G+Q+H+H++K G    + + + ++ +Y K        ++   + 
Sbjct: 466 YPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++V+W  +I+G +  +        F  M    ++ D+I F S + AC     +  G++
Sbjct: 526 EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ 585

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+     GFG +  +++AL+ LY +CG +++A   F+++  ++ + WN +VS  A +  
Sbjct: 586 IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGY 645

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ VF  M     + + FT+ S +++  +L + K G+QIH +V+K  +D +  V+ S
Sbjct: 646 FEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNS 705

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ +YAK+G+I DA R F+ M+ +NV+SWN M+ G+ Q+G G EA++L  +M      P+
Sbjct: 706 LISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPN 765

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYSK 411
            VT   +LS+C  + +           +K G+  F S+               +++   +
Sbjct: 766 HVTFVGVLSACSHIGL-----------VKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGR 814

Query: 412 CGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            G +  A++    +  P D + W +++ A   H    ++IE+ E+   H
Sbjct: 815 AGQLDRAMEYIKEMPIPADAMIWRTLLSACVIH----KNIEIGERAAHH 859


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 316/573 (55%), Gaps = 5/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A  G    G+Q+HS I+K+G    +   + +L +Y KC+  +D    F  + 
Sbjct: 102 FGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSIS 161

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRR--MLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V+WN +I+G    G   T ++    M  +  ++D  T+  LL     AD   +  +
Sbjct: 162 KHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQ 221

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LH  I+K G  L   + +AL+  Y KCG ++DA+R+FD     RDLV WN +++ Y L  
Sbjct: 222 LHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRS 281

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             D A  +   M+  G + D ++++S++++C     S  GR +HGLVIK+ F+  V ++ 
Sbjct: 282 QEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISN 341

Query: 303 SLVDMYAKN--GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +L+ MY K+  G++ +A  +F+ +  K+ VSWN+++ G  Q G   +AVK    M   + 
Sbjct: 342 ALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAM 401

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D  + +++L SC  L+     +Q+H  A+K G+++   + ++LI  YSKCG I  A +
Sbjct: 402 DIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARR 461

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F    +   +TW +++  YA HG    ++++F  M    V+ D I F+ VL+ACSH GL
Sbjct: 462 SFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGL 521

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V +G ++   M SDY + P  EHY C  DL GR G L EA  L+  MP +P +     F+
Sbjct: 522 VEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC+  G+I LA   A  LLE+EP +   Y L+SN+Y +   W + A+++++M++    K
Sbjct: 582 GACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKK 641

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           VPG SWIE+   +H F++ D SHP    +Y +L
Sbjct: 642 VPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLL 674



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 214/396 (54%), Gaps = 5/396 (1%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           HS  +KLG    +   N +L+ Y KCK     + LFDEM +R+ V+WNT+I+G INCG  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 146 VTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
              +   R M      LD  TF S+L+    A    +G+++HS I+K+G+  N +  SAL
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D+Y KC  +EDA   F  +   + V WN M++ YA     + A  + + M  EG K D 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            T++ L+          L  Q+HG +IK   +L   +  +L+  Y+K G++DDA R+FD 
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 324 MTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
               +++V+WN+++  +        A KLL DM +  F PD  +  SI+S+C + +IS  
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKC--GSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            R +H   IK G +  + I NALI+ Y K   GS+  AL  F S++  D V+W SI+   
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGL 380

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +  G S+++++ F  M S A+  D  +F  VL +CS
Sbjct: 381 SQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCS 416



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 3/310 (0%)

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS  +K+G   + +  + +++ Y KC  +  A  +FDE+  RD V WN M++ + +NC  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGH-INCGN 79

Query: 245 -DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + +  V   MR  G + D +TF S++      G   LG+Q+H ++IK  +  +V   ++
Sbjct: 80  LEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSA 139

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK   ++DA   F  ++  N VSWN M+ G+ Q GD   A  LL  M Q     D
Sbjct: 140 LLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVD 199

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF- 422
           + T A +L           T Q+H   IK+G++   ++ NALI +YSKCGS+  A + F 
Sbjct: 200 DGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFD 259

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            S    DLVTW S++ AY        + ++   M  H   PD  ++  ++SAC +  + +
Sbjct: 260 SSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISN 319

Query: 483 EGLRYFNLMI 492
            G     L+I
Sbjct: 320 NGRSLHGLVI 329



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L+  +     Q G+Q+H   +K GL +   + + ++ +Y KC   +D  + F+
Sbjct: 405 HYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFE 464

Query: 123 EMRVRNIVTWNTLISGIINCGG-NVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           E    + +TWN L+ G    G  NV    F  M    V++DHITF ++L AC     +E 
Sbjct: 465 EASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQ 524

Query: 181 G-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV 235
           G + L       G        +  VDLYG+ G +E+A+ + +E+  + D  +W   +
Sbjct: 525 GCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 310/561 (55%), Gaps = 34/561 (6%)

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNV 158
           +N +L  YVK    D   +LFD M  R++V+WN ++S +   G           M    V
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           RLD  T+ S L AC +   +  G++LH+ +++    ++ +V+SALV+LY KCG  ++A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+ +  R+ V W V+++ +  +     ++ +FN MR E M  D F  ++L++ C +   
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---------------------------- 310
             LGRQ+H L +K      V+V+ SL+ MYAK                            
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 311 ---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVT 366
               GNI  A   FDGM+ KNV++WN M+  + Q+G   + +++   ML +    PD VT
Sbjct: 447 HSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVT 506

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             ++   C  L  +    Q+    +K G+    S+ NA+I  YSKCG I  A + F  + 
Sbjct: 507 YVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V+W ++I  Y+ HG+ K++IE+F+ +L    +PD I+++ VLS CSH GLV EG  
Sbjct: 567 VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKS 626

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF++M   ++I P  EH++C+ DLLGR G L EA DL+  MP++P ++  GA + ACK+H
Sbjct: 627 YFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIH 686

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G+  LA+ AA+ + EL+     +Y L++ +YA      D A++RK+MRD    K PG SW
Sbjct: 687 GNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSW 746

Query: 607 IEIAGEIHTFVSSDRSHPQAV 627
           +E+  ++H F + D SHPQ +
Sbjct: 747 MEVNNKVHVFKADDVSHPQVI 767



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 222/466 (47%), Gaps = 45/466 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ +L   A+   L+ GKQLH+ +++   C    + + ++ +Y KC  F + + +F+ + 
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLH 332

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN V W  LI+G +   C       F +M  + + LD     +L+  C    D+ +GR+
Sbjct: 333 DRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 392

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKC-------------------------------GF 212
           LHS  LK G      VS++L+ +Y KC                               G 
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGN 452

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVN 271
           +  AR  FD +  ++++ WN M+  Y  +   +  + ++N+M  E  ++ D+ T+ +L  
Sbjct: 453 IAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFK 512

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
            C  LG++KLG QI G  +K    LD  VA +++ MY+K G I +A +VFD +  K++VS
Sbjct: 513 GCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 572

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV----- 386
           WN M+ G+ Q+G G++A+++  D+L+    PD ++  ++LS C    +  E +       
Sbjct: 573 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMK 632

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGL 445
             + I  G++ F    + +++   + G +  A      +  +P    W +++ A   HG 
Sbjct: 633 RVHNISPGLEHF----SCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHG- 687

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           + E  E+  K +     PDS +++ +    +  G   +  +   LM
Sbjct: 688 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLM 733



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 231/488 (47%), Gaps = 70/488 (14%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL------------------------- 120
           H  ++ +GL + + LQN +LH Y+ C A  D  +L                         
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 121 -------FDEMRVRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLR 170
                  F  M  R++ +WNTL+SG         ++  +       +   +  TF   ++
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR------------ 218
           +C    +  +  +L   + K G   +  V++ALVD++ +CG V+ A R            
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 219 -------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
                              +FD +  RD+V WN+MVS  + +     A+ +   M+ +G+
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T++S + +C  L S + G+Q+H  VI+    +D  VA++LV++YAK G   +A  
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +  +N V+W  ++ GF Q+G   E+V+L   M       D+  LA+++S C S   
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
            C  RQ+H+  +K+G    + + N+LI+ Y+KC ++  A   F  + E D+V+WTS+I A
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           ++  G   ++ E F+ M +  V    I +  +L A    G   +GLR +N+M+S+  + P
Sbjct: 447 HSQVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502

Query: 500 DSEHYTCL 507
           D   Y  L
Sbjct: 503 DWVTYVTL 510



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 158/376 (42%), Gaps = 64/376 (17%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR----- 218
            F   LR+C     +   R LH  ++ VG     F+ + L+  Y  CG + DARR     
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 219 ---------------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
                                      +F  +  RD+  WN ++S Y  +     ++  F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 252 NLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
             M   G    + FTF+  + SCG LG   L  Q+ G+V K     D  VA +LVDM+ +
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 311 NGNIDDACR-------------------------------VFDGMTAKNVVSWNTMVVGF 339
            G +D A R                               +FD M  ++VVSWN MV   
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q+G  REA+ ++ DM       D  T  S L++C  LS     +Q+HA  I+N      
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + +AL+  Y+KCG    A   F S+ + + V WT +I  +  HG   ES+E+F +M + 
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365

Query: 460 AVRPDSIAFLEVLSAC 475
            +  D  A   ++S C
Sbjct: 366 LMTLDQFALATLISGC 381



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 131/329 (39%), Gaps = 69/329 (20%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL-------------------- 304
            F+  + SCG  G+    R +HG ++       V +  +L                    
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 305 ------------VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                       ++ Y K G + DA  +F  M A++V SWNT++ G+ Q+     +++  
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 353 RDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
             M + G   P+  T A  + SCG+L       Q+     K G Q    +  AL++ + +
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 412 CGSIAGALQCFGSVKEP-------------------------------DLVTWTSIIGAY 440
           CG++  A + F  +KEP                               D+V+W  ++ A 
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           +  G  +E++++   M S  VR DS  +   L+AC+    +  G +    +I +   LP 
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN---LPC 302

Query: 501 SEHY--TCLTDLLGRVGLLVEAYDLLASM 527
            + Y  + L +L  + G   EA  +  S+
Sbjct: 303 IDPYVASALVELYAKCGCFKEAKGVFNSL 331


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 316/573 (55%), Gaps = 5/573 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A  G    G+Q+HS I+K+G    +   + +L +Y KC+  +D    F  + 
Sbjct: 102 FGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSIS 161

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRR--MLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V+WN +I+G    G   T ++    M  +  ++D  T+  LL     AD   +  +
Sbjct: 162 KHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQ 221

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LH  I+K G  L   + +AL+  Y KCG ++DA+R+FD     RDLV WN +++ Y L  
Sbjct: 222 LHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRS 281

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             D A  +   M+  G + D ++++S++++C     S  GR +HGLVIK+ F+  V ++ 
Sbjct: 282 QEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISN 341

Query: 303 SLVDMYAKN--GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +L+ MY K+  G++ +A  +F+ +  K+ VSWN+++ G  Q G   +AVK    M   + 
Sbjct: 342 ALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAM 401

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D  + +++L SC  L+     +Q+H  A+K G+++   + ++LI  YSKCG I  A +
Sbjct: 402 DIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARR 461

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F    +   +TW +++  YA HG    ++++F  M    V+ D I F+ VL+ACSH GL
Sbjct: 462 SFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGL 521

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V +G ++   M SDY + P  EHY C  DL GR G L EA  L+  MP +P +     F+
Sbjct: 522 VEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC+  G+I LA   A  LLE+EP +   Y L+SN+Y +   W + A+++++M++    K
Sbjct: 582 GACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKK 641

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           VPG SWIE+   +H F++ D SHP    +Y +L
Sbjct: 642 VPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLL 674



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 214/396 (54%), Gaps = 5/396 (1%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           HS  +KLG    +   N +L+ Y KCK     + LFDEM +R+ V+WNT+I+G INCG  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 146 VTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
              +   R M      LD  TF S+L+    A    +G+++HS I+K+G+  N +  SAL
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D+Y KC  +EDA   F  +   + V WN M++ YA     + A  + + M  EG K D 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            T++ L+          L  Q+HG +IK   +L   +  +L+  Y+K G++DDA R+FD 
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 324 MTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
               +++V+WN+++  +        A KLL DM +  F PD  +  SI+S+C + +IS  
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKC--GSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            R +H   IK G +  + I NALI+ Y K   GS+  AL  F S++  D V+W SI+   
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGL 380

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +  G S+++++ F  M S A+  D  +F  VL +CS
Sbjct: 381 SQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCS 416



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 3/310 (0%)

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS  +K+G   + +  + +++ Y KC  +  A  +FDE+  RD V WN M++ + +NC  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGH-INCGN 79

Query: 245 -DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + +  V   MR  G + D +TF S++      G   LG+Q+H ++IK  +  +V   ++
Sbjct: 80  LEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSA 139

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK   ++DA   F  ++  N VSWN M+ G+ Q GD   A  LL  M Q     D
Sbjct: 140 LLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVD 199

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF- 422
           + T A +L           T Q+H   IK+G++   ++ NALI +YSKCGS+  A + F 
Sbjct: 200 DGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFD 259

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            S    DLVTW S++ AY        + ++   M  H   PD  ++  ++SAC +  + +
Sbjct: 260 SSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISN 319

Query: 483 EGLRYFNLMI 492
            G     L+I
Sbjct: 320 NGRSLHGLVI 329



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L+  +     Q G+Q+H   +K GL +   + + ++ +Y KC   +D  + F+
Sbjct: 405 HYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFE 464

Query: 123 EMRVRNIVTWNTLISGIINCGG-NVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           E    + +TWN L+ G    G  NV    F  M    V++DHITF ++L AC     +E 
Sbjct: 465 EASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQ 524

Query: 181 G-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV 235
           G + L       G        +  VDLYG+ G +E+A+ + +E+  + D  +W   +
Sbjct: 525 GCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFL 581


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 323/591 (54%), Gaps = 43/591 (7%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKC-----KAFDDMEKLFDEMRVRNIVTWNTLIS 137
           KQLH+H+++ GL            ++  C      + D   K+FD++   N+ TWNTLI 
Sbjct: 47  KQLHAHMLRTGL---FFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103

Query: 138 GIINCGGNVTPY--FRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              +    +     F +ML ++ R  +  TF  +++A  +   +  G+ +H  ++K  FG
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + F+S++L+  Y   G ++ A  VF +++ +D+V WN M+S +      + A+ +F  M
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM 223

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           ++E  + +  T   ++++C      + GR     + +   D++++++ +++DMY K G++
Sbjct: 224 KMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSL 283

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFG-------------------------------QNG 343
           +DA R+FD M  K++VSW TM+ G+                                QNG
Sbjct: 284 EDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNG 343

Query: 344 DGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
             +EA+ + R++ L  +  P+EVTLAS L++C  L        +H Y  K G++    I 
Sbjct: 344 KPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHIT 403

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            +LI+ YSKCG +  AL+ F SV+  D+  W+++I   A HG  + +I++F KM    V+
Sbjct: 404 TSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVK 463

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+++ F  +L ACSH GLV EG  +FN M   Y ++P S+HY C+ D+LGR G L EA +
Sbjct: 464 PNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVE 523

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
           L+  MPI P +   GA +GAC+++G++ LA+ A  +LLE + +    Y L+SN+YA    
Sbjct: 524 LIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGK 583

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           W  V+RLR+ M+ +   K PGCS IE+ G IH F+  D SHP +  +Y+ L
Sbjct: 584 WDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKL 634



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 219/452 (48%), Gaps = 49/452 (10%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +HES    +S+ +   +K + +   L  G+ +H  +MK    + L + N ++H Y     
Sbjct: 122 LHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGD 181

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRA 171
            D    +F ++  ++IV+WN++ISG +  G        F+RM ++N R + +T   +L A
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-- 229
           C +  D+E GR    +I + G  +N  +S+A++D+Y KCG +EDARR+FD++  +D+V  
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW 301

Query: 230 -----------------------------LWNVMVSCYALNCLGDGAIAVFNLMRL-EGM 259
                                         WN ++S Y  N     A+A+F  ++L +  
Sbjct: 302 TTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNT 361

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K +  T +S + +C  LG+  LG  IH  + KQ   L+  + TSL+DMY+K G+++ A  
Sbjct: 362 KPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALE 421

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  +  ++V  W+ M+ G   +G GR A+ L   M +    P+ VT  ++L +C    +
Sbjct: 422 VFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGL 481

Query: 380 SCETR----QVHA-YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTW 433
             E R    Q+   Y +  G + +      +++   + G +  A++    +   P    W
Sbjct: 482 VDEGRLFFNQMRPVYGVVPGSKHYA----CMVDILGRAGCLEEAVELIEKMPIVPSASVW 537

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
            +++GA   +G    ++E+ E   S  +  DS
Sbjct: 538 GALLGACRIYG----NVELAEMACSRLLETDS 565


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 322/608 (52%), Gaps = 4/608 (0%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           + E    + + ++ A +  A     + G QLH++ +K        +    L +Y KC   
Sbjct: 263 LDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRM 322

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
            D  K+F+        + N LI G             FR +    +  D I+ +  L AC
Sbjct: 323 VDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTAC 382

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                   G +LH   +K G   N  V++ ++D+Y KCG + +A  +FD++  +D V WN
Sbjct: 383 SAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWN 442

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++ +  N   +  +A+F  M    M+ D +TF S+V +C    +   G ++HG VIK 
Sbjct: 443 AIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS 502

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
              LD  V ++++DMY K G + +A ++ + +  +  VSWN+++ GF     G  A+   
Sbjct: 503 GMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYF 562

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             MLQ    PD  T A++L  C +L+     +Q+H   +K  + + + I + +++ YSKC
Sbjct: 563 SRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKC 622

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G++  +   F    + D VTW+++I AYA+HGL +++I++FE+M    V+P+   F+ VL
Sbjct: 623 GNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVL 682

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
            AC+H G V +GL YF  M S Y + P  EHY+C+ DLLGR G + EA +L+ SMP E  
Sbjct: 683 RACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEAD 742

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
                  +G C++ G++ +A+ AA  LL+L+P     Y L+SNVYA    W +VA++R  
Sbjct: 743 DVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSF 802

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCN-- 650
           M++    K PGCSWI++  E+H F+  D++HP++  +Y     +   M+ +      +  
Sbjct: 803 MKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTHLLVDEMKWDGYVPEIDGF 862

Query: 651 VLDKEMDE 658
           +LD+E+DE
Sbjct: 863 LLDEEVDE 870



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 249/522 (47%), Gaps = 48/522 (9%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGF------------LQQGKQLHSHIMK 91
           VL   + NS T     ++ HS  S  +  + K  F            +  GKQ H+ I  
Sbjct: 9   VLHLPILNSQTT--PPYAIHSISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITV 66

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG------- 144
            G    + + N +L  Y KC   +    +FD+M  R++++WNT+I G    G        
Sbjct: 67  TGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFL 126

Query: 145 -------NVTPY-------------------FRRMLLDNVRLDHITFNSLLRACVQADDI 178
                  +V  +                   F +M L  ++ D+ TF  +L+AC   +D 
Sbjct: 127 FDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDY 186

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G ++H   +++GF  +    +ALVD+Y  C  ++ A  +F E+  R+ V W+ +++ Y
Sbjct: 187 GLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGY 246

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N      + ++ +M  EGM     TF+S   SC  L + +LG Q+H   +K +F  D 
Sbjct: 247 VRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDN 306

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           +V T+ +DMYAK   + DA +VF+        S N ++VG+ +     EA+++ R + + 
Sbjct: 307 IVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKS 366

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               DE++L+  L++C ++    E  Q+H  A+K G+   + + N +++ Y+KCG++  A
Sbjct: 367 YLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEA 426

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  ++  D V+W +II A+  +   +E++ +F  ML   + PD   F  V+ AC+  
Sbjct: 427 CLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGK 486

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
             ++ G+     +I     L D    + + D+  + G+LVEA
Sbjct: 487 KALNYGMEVHGRVIKSGMGL-DWFVGSAIIDMYCKCGMLVEA 527


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/536 (36%), Positives = 297/536 (55%), Gaps = 12/536 (2%)

Query: 107 VYVKCKAFDDMEKLF-DEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHI 163
           +Y KC   +    +F D     N+  +N +ISG I  G       ++++M  + V  D  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF   ++AC+   +I   +++H  + K G  L+ F+ SALV+ Y K G +E A+  F+E+
Sbjct: 61  TFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 117

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RD+VLWN MV+ YA     +  +  F  M  E +    FT + +++    +G    GR
Sbjct: 118 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGR 177

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            IHG  +K  +D  V V+ SL+DMY K   I+DA  +F+ M  K++ SWN++     Q G
Sbjct: 178 IIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCG 237

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF----- 398
           D    ++LL  ML     PD VT+ ++L +C  L+     R++H Y I +G+        
Sbjct: 238 DHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDID 297

Query: 399 -LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + ++NA+I+ Y+KCGS+  A   F  +   D+ +W  +I  Y  HG   E++E+F +M 
Sbjct: 298 DVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMC 357

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              ++PD + F+ VLSACSH G VS+G  +   M S Y + P  EHYTC+ D+LGR G L
Sbjct: 358 EVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQL 417

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EAY+L  +MPIE       A + AC++H    LA+ AA+++ ELEP    +Y L+SNVY
Sbjct: 418 DEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVY 477

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            +   + +V  +R  MR     K PGCSWIE+   +H FVS+DR+HP+A  +YA L
Sbjct: 478 GAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGL 533



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 215/421 (51%), Gaps = 20/421 (4%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           ITN    +      ++RN G + +        ++    + A    L+  K++H  + K G
Sbjct: 35  ITNGFPEEGFEFYQKMRNEGVMPDK-------FTFPCAIKACLDVLEI-KKIHGLLFKFG 86

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFR 151
           L   + + + +++ Y+K    +  +  F+E+ +R++V WN +++G    G    V   FR
Sbjct: 87  LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 146

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           RM  ++V     T   +L       D+  GR +H F +K+G+     VS++L+D+YGKC 
Sbjct: 147 RMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCK 206

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            +EDA  +F+ +  +D+  WN + S +      DG + + + M   G++ D  T ++++ 
Sbjct: 207 CIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLP 266

Query: 272 SCGTLGSSKLGRQIHGLVI-----KQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +C  L +   GR+IHG +I     K   D+ DVL+  +++DMYAK G++ DA  VF+ M 
Sbjct: 267 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMX 326

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            K+V SWN M++G+G +G G EA+++   M +    PDEVT   +LS+C       + R 
Sbjct: 327 NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 386

Query: 386 VHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAF 442
             A  +K+      +IE+   +I+   + G +  A +   ++  E + V W +++ A   
Sbjct: 387 FLA-QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRL 445

Query: 443 H 443
           H
Sbjct: 446 H 446



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 172/366 (46%), Gaps = 26/366 (7%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A  G L  G+ +H   MK+G  + +++ N ++ +Y KCK  +D  ++F+ MR ++I
Sbjct: 164 LSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 223

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            +WN++ S    CG +        RML   ++ D +T  ++L AC     +  GR +H +
Sbjct: 224 FSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 283

Query: 188 ILKVGFGL------NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           ++  G G       +  + +A++D+Y KCG + DA  VF+ +  +D+  WN+M+  Y ++
Sbjct: 284 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMH 343

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
             G+ A+ +F+ M    +K D  TF  ++++C   G    GR      +K  +D+   + 
Sbjct: 344 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQ-MKSKYDVAPTIE 402

Query: 302 --TSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVG--FGQNGDGREAVKLLRDML 356
             T ++DM  + G +D+A  +   M  + N V W  ++      ++    E        L
Sbjct: 403 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL 462

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHA------------YAIKNGVQAFLSIENA 404
           +   C   V ++++  + G      E R                  +KNGV  F+S + A
Sbjct: 463 EPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRA 522

Query: 405 LINAYS 410
              AYS
Sbjct: 523 HPEAYS 528


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 326/589 (55%), Gaps = 10/589 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +K  A    L++GK++H+ ++KLG  + + + N ++ +Y+K     D EK+F+EM 
Sbjct: 133 YPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP 192

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+IV+WN++ISG +  G   +    F+ ML    + D  +  S L AC      ++G+ 
Sbjct: 193 ERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKE 252

Query: 184 LHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +H   ++      +  V ++++D+Y K G V  A R+F+ ++ R++V WNVM+ CYA N 
Sbjct: 253 IHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNG 312

Query: 243 LGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
               A   F  M  + G++ D  T  +L+ +   L     GR IHG  +++ F   +++ 
Sbjct: 313 RVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLE 368

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T+L+DMY + G +  A  +FD M  KNV+SWN+++  + QNG    A++L +++   S  
Sbjct: 369 TALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLV 428

Query: 362 PDEVTLASILSSCG-SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           PD  T+ASIL +   SLS+S E R++HAY +K+   +   I N+L++ Y+ CG +  A +
Sbjct: 429 PDSTTIASILPAYAESLSLS-EGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARK 487

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
           CF  +   D+V+W SII AYA HG  + S+ +F +M++  V P+   F  +L+ACS  G+
Sbjct: 488 CFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGM 547

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG  YF  M  +Y I P  EHY C+ DL+GR G    A   L  MP  P +   G+ +
Sbjct: 548 VDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLL 607

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            A + H  I +A++AAE++ ++E      Y L+ N+YA    W DV R++ +M      +
Sbjct: 608 NASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISR 667

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHC 649
               S +E  G+ H F + DRSH     +Y +L  V  ++ E ++  HC
Sbjct: 668 TSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHC 716



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 180/352 (51%), Gaps = 24/352 (6%)

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            +EDA ++FDE+   D  LWNVM+  +    L   A+  ++ M   G+K D FT+  ++ 
Sbjct: 79  LMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIK 138

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           S   + S + G++IH +VIK  F  DV V  SL+ +Y K G   DA +VF+ M  +++VS
Sbjct: 139 SVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVS 198

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN+M+ G+   GDG  ++ L ++ML+  F PD  +  S L +C  +      +++H +A+
Sbjct: 199 WNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAV 258

Query: 392 KNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           ++ ++   + +  ++++ YSK G ++ A + F  + + ++V W  +IG YA +G   ++ 
Sbjct: 259 RSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAF 318

Query: 451 EVFEKMLSH-AVRPDSIAFLEVLSACS-------HGGLVSEGLRYFNLMISDYHILPDSE 502
             F+KM     ++PD I  + +L A +       HG  +  G             LP   
Sbjct: 319 LCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGF------------LPHMV 366

Query: 503 HYTCLTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
             T L D+ G  G L  A   +D +A   +   +  + A++   K + ++ L
Sbjct: 367 LETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALEL 418



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%)

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           +A +  ++DA ++FD M   +   WN M+ GF   G   EAV+    M+      D  T 
Sbjct: 74  FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTY 133

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
             ++ S   +S   E +++HA  IK G  + + + N+LI+ Y K G    A + F  + E
Sbjct: 134 PFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            D+V+W S+I  Y   G    S+ +F++ML    +PD  + +  L ACSH
Sbjct: 194 RDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSH 243


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 303/537 (56%), Gaps = 24/537 (4%)

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
           ++ K  +   +LFD++  R++++WN++ISG ++ G        +++M+   + +D  T  
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATII 255

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L  C  +  + +G+ +HS  +K  F      S+ L+D+Y KCG ++ A RVF+++  R
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W  M++ Y  +   DGAI +   M  EG+K D    +S++++C   GS   G+ +H
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVH 375

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +   + + ++ V  +L+DMY K G++D A  VF  M  K+++SWNTM+          
Sbjct: 376 DYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI---------- 425

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
                      G   PD  T+A IL +C SLS     +++H Y ++NG  +   + NAL+
Sbjct: 426 -----------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALV 474

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KCG +  A   F  +   DLV+WT +I  Y  HG   E+I  F +M    + PD +
Sbjct: 475 DLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEV 534

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
           +F+ +L ACSH GL+ +G R+F +M +D++I P  EHY C+ DLL R G L +AY+ + +
Sbjct: 535 SFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIET 594

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           +PI P +   GA +  C+++  I LA+  AE++ ELEP     Y L++N+YA    W +V
Sbjct: 595 LPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEV 654

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS-SDRSHPQAVHMYAMLCTVFGLMEE 642
            R+R+ +      K PGCSWIEI G+++ FVS ++ SHP +  + ++L  +   M+E
Sbjct: 655 KRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 711



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 208/408 (50%), Gaps = 35/408 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L  GK +HS  +K     +++  N +L +Y KC   D   ++F++M  RN+V+W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 134 TLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++I+G    G +       ++M  + V+LD +   S+L AC ++  ++ G+ +H +I   
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               N FV +AL+D+Y KCG ++ A  VF  ++ +D++ WN M+                
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG--------------- 426

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
                  +K D  T + ++ +C +L + + G++IHG +++  +  D  VA +LVD+Y K 
Sbjct: 427 ------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +  A  +FD + +K++VSW  M+ G+G +G G EA+    +M      PDEV+  SIL
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EP 428
            +C S S   E      Y +KN       +E+   +++  S+ G+++ A +   ++   P
Sbjct: 541 YAC-SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAP 599

Query: 429 DLVTWTSII-GAYAFHGLSKESIEVFEKMLSHA--VRPDSIAFLEVLS 473
           D   W +++ G   +H      IE+ EK+      + P++  +  +L+
Sbjct: 600 DATIWGALLCGCRIYH-----DIELAEKVAERVFELEPENTGYYVLLA 642



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 141/272 (51%), Gaps = 23/272 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK +H +I    + + L + N ++ +Y KC + D    +F  M V++I
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDI 418

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           ++WNT+I       G + P            D  T   +L AC     +E G+ +H +IL
Sbjct: 419 ISWNTMI-------GELKP------------DSRTMACILPACASLSALERGKEIHGYIL 459

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           + G+  +  V++ALVDLY KCG +  AR +FD +  +DLV W VM+S Y ++  G+ AIA
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIA 519

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDM 307
            FN MR  G++ D  +F S++ +C   G  + G +    ++K  F+++  +     +VD+
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDL 578

Query: 308 YAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
            ++ GN+  A    + +  A +   W  ++ G
Sbjct: 579 LSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 88/386 (22%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           T+SS++  C    S   G+++H ++   +  +D ++   LV +YA  G++ +  RVFD M
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 325 TAKN---------------------------------------------------VVSWN 333
             KN                                                   V+SWN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSISCETRQVHAYA 390
           +M+ G+  NG     +++ + M+      D  T+ S+L  C   G+LS+    + VH+ A
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG---KAVHSLA 277

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           IK+  +  ++  N L++ YSKCG + GAL+ F  + E ++V+WTS+I  Y   G S  +I
Sbjct: 278 IKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC--LT 508
            + ++M    V+ D +A   +L AC+  G +  G    + + ++     +S  + C  L 
Sbjct: 338 RLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNM---ESNLFVCNALM 394

Query: 509 DLLGRVGLLVEAYDLLASM-------------PIEPRSDTLGAFIGACKVHGSIGLAKWA 555
           D+  + G +  A  + ++M              ++P S T+   + AC            
Sbjct: 395 DMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACA----------- 443

Query: 556 AEKLLELEPSKPVNYALVSNVYASER 581
              L  LE  K ++  ++ N Y+S+R
Sbjct: 444 --SLSALERGKEIHGYILRNGYSSDR 467


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 306/548 (55%), Gaps = 3/548 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G   H +++KLG   + ++ N ++  Y K    D+   +FD M  ++ ++WN++ISG 
Sbjct: 427 RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 140 INCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G N      F RM +    LD  T  S+L AC ++    VGR +H + +K G     
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGET 546

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            +++AL+D+Y  C       ++F  +  +++V W  M++ Y    L D    +   M L+
Sbjct: 547 SLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLD 606

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+K D F  +S+++      S K G+ +HG  I+   +  + VA +L++MY    N+++A
Sbjct: 607 GIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEA 666

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             VFD +T K+++SWNT++ G+ +N    E+  L  DML   F P+ VT+  IL +  S+
Sbjct: 667 RLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLL-QFKPNTVTMTCILPAVASI 725

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S     R++HAYA++ G        NAL++ Y KCG++  A   F  + + +L++WT +I
Sbjct: 726 SSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 785

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             Y  HG  K+++ +FE+M    V PD+ +F  +L AC H GL +EG ++FN M  +Y I
Sbjct: 786 AGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKI 845

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  +HYTC+ DLL   G L EA++ + SMPIEP S    + +  C++H  + LA+  A+
Sbjct: 846 EPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVAD 905

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           ++ +LEP     Y L++N+YA    W  V +L+  +      +  GCSWIE+ G++H F+
Sbjct: 906 RVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFI 965

Query: 618 SSDRSHPQ 625
           + +R+HP+
Sbjct: 966 ADNRNHPE 973



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 214/429 (49%), Gaps = 16/429 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A  G + +G+ +H  + KLGL    ++ N ++ +Y +C   +D  ++FD M  R+ 
Sbjct: 205 LKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDA 264

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WN+ ISG  + G        F +M  +   +  +T  S+L AC +     VG+ +H +
Sbjct: 265 ISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGY 324

Query: 188 ILKVGF---------GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVSC 237
            +K G          G++  + S LV +Y KCG +  ARRVFD +  +  V +WN+++  
Sbjct: 325 SMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGG 384

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           YA     + ++ +F  M   G+  D    S L+     L  ++ G   HG ++K  F   
Sbjct: 385 YAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQ 444

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             V  +L+  YAK+  ID+A  VFD M  ++ +SWN+++ G   NG   EA++L   M  
Sbjct: 445 CAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWM 504

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
                D  TL S+L +C         R VH Y++K G+    S+ NAL++ YS C     
Sbjct: 505 QGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHS 564

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
             Q F ++ + ++V+WT++I +Y   GL  +   + ++M+   ++PD  A   VL    H
Sbjct: 565 TNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL----H 620

Query: 478 GGLVSEGLR 486
           G    E L+
Sbjct: 621 GFAGDESLK 629



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 192/391 (49%), Gaps = 14/391 (3%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLISGIINCGG--NVTPYFRRMLL 155
           L  +++  Y+KC        +FDEM  RV ++  W +L+S     G        FR+M  
Sbjct: 132 LGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC 191

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             V  D    + +L+       I  G  +H  + K+G G  C V++AL+ LY +CG +ED
Sbjct: 192 CGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMED 251

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A +VFD +  RD + WN  +S Y  N   D A+ +F+ M  EG +    T  S++ +C  
Sbjct: 252 AMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAE 311

Query: 276 LGSSKLGRQIHGLVIKQSF---------DLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           LG   +G+ +HG  +K             +D  + + LV MY K G++  A RVFD M +
Sbjct: 312 LGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPS 371

Query: 327 K-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           K NV  WN ++ G+ +  +  E++ L   M +    PDE  L+ +L     LS + +   
Sbjct: 372 KGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLV 431

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
            H Y +K G     ++ NALI+ Y+K   I  A+  F  +   D ++W S+I     +GL
Sbjct: 432 AHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGL 491

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           + E+IE+F +M       DS   L VL AC+
Sbjct: 492 NSEAIELFVRMWMQGHELDSTTLLSVLPACA 522



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 229/498 (45%), Gaps = 20/498 (4%)

Query: 40  HDRSV-LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKL 98
           HDR+V L S++ + GT   S           L   A+ GF   GK +H + MK GL   L
Sbjct: 280 HDRAVDLFSKMWSEGTEISSVTVL-----SVLPACAELGFELVGKVVHGYSMKSGLLWDL 334

Query: 99  ---------SLQNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLISGIINCGG--NV 146
                    +L ++++ +YVKC       ++FD M  + N+  WN ++ G          
Sbjct: 335 ESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEES 394

Query: 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
              F +M    +  D    + LL+          G   H +++K+GFG  C V +AL+  
Sbjct: 395 LLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISF 454

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           Y K   +++A  VFD +  +D + WN ++S    N L   AI +F  M ++G + D  T 
Sbjct: 455 YAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTL 514

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
            S++ +C       +GR +HG  +K     +  +A +L+DMY+   +     ++F  M  
Sbjct: 515 LSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQ 574

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           KNVVSW  M+  + + G   +   LL++M+     PD   + S+L          + + V
Sbjct: 575 KNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSV 634

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H YAI+NG++  L + NAL+  Y  C ++  A   F  V   D+++W ++IG Y+ +  +
Sbjct: 635 HGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFA 694

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
            ES  +F  ML    +P+++    +L A +    +  G R  +        L DS     
Sbjct: 695 NESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERG-REIHAYALRRGFLEDSYTSNA 752

Query: 507 LTDLLGRVGLLVEAYDLL 524
           L D+  + G L+ A  L 
Sbjct: 753 LVDMYVKCGALLVARVLF 770



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 5/232 (2%)

Query: 254 MRLEGMKGDY--FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAK 310
           +RL G  G     ++ ++V  CG   S +  R+ H LV   +  +   ++   LV  Y K
Sbjct: 83  LRLLGSDGGVGVRSYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLK 142

Query: 311 NGNIDDACRVFDGMTAK--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            G++  A  VFD M  +  +V  W +++  + + GD +E V L R M      PD   ++
Sbjct: 143 CGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVS 202

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
            +L    SL    E   +H    K G+    ++ NALI  YS+CG +  A+Q F S+   
Sbjct: 203 CVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHAR 262

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
           D ++W S I  Y  +G    ++++F KM S      S+  L VL AC+  G 
Sbjct: 263 DAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGF 314



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A    L++G+++H++ ++ G        N ++ +YVKC A      LFD +  +N+
Sbjct: 719 LPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNL 778

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           ++W  +I+  G+  CG +    F +M    V  D  +F+++L AC  +
Sbjct: 779 ISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHS 826



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 341 QNGDGREAVKLL-RDMLQG--SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           Q GD   A++LL  D   G  S+C       +++  CG        R+ HA  ++ G   
Sbjct: 75  QAGDLAAALRLLGSDGGVGVRSYC-------AVVQLCGEERSLEAARRAHAL-VRAGTGG 126

Query: 398 FLS--IENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVF 453
            +   +   L+ AY KCG + GA   F  +  +  D+  WTS++ AYA  G  +E + +F
Sbjct: 127 IIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLF 186

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +M    V PD+ A   VL   +  G ++EG
Sbjct: 187 RQMQCCGVSPDAHAVSCVLKCIASLGSITEG 217


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/600 (34%), Positives = 323/600 (53%), Gaps = 16/600 (2%)

Query: 47  SQLRNSGTIHESTHSAHSFYS-------QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS 99
           S L+ + T+     S  +F S       Q+L  S     L Q  QLH+H+   G   + +
Sbjct: 2   SLLKTTATLIPKPSSTSTFDSLQCGTLLQSLTNSKS---LTQALQLHAHVTTGGTLRRNT 58

Query: 100 -LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD 156
            L  ++   Y  C      + +FD++ ++N   WN++I G    N        + +ML  
Sbjct: 59  YLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHF 118

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
             + D+ T+  +L+AC      E+GR++H+ ++  G   + +V ++++ +Y K G VE A
Sbjct: 119 GQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAA 178

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R VFD +L RDL  WN M+S +  N    GA  VF  MR +G  GD  T  +L+++CG +
Sbjct: 179 RVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDV 238

Query: 277 GSSKLGRQIHGLVIKQSFDLDV---LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
              K+G++IHG V++      V    +  S++DMY    ++  A ++F+G+  K+VVSWN
Sbjct: 239 MDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWN 298

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +++ G+ + GD  +A++L   M+     PDEVT+ S+L++C  +S       V +Y +K 
Sbjct: 299 SLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKR 358

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G    + +  ALI  Y+ CGS+  A + F  + E +L   T ++  +  HG  +E+I +F
Sbjct: 359 GYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIF 418

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
            +ML   V PD   F  VLSACSH GLV EG   F  M  DY + P   HY+CL DLLGR
Sbjct: 419 YEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGR 478

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            G L EAY ++ +M ++P  D   A + AC++H ++ LA  +A+KL EL P     Y  +
Sbjct: 479 AGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCL 538

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SN+YA+ER W DV  +R ++      K P  S++E+   +H F   D SH Q+  +YA L
Sbjct: 539 SNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKL 598


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 192/578 (33%), Positives = 318/578 (55%), Gaps = 3/578 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL     F + + GK++H+ ++K     ++ + N ++ +Y +C    +  ++   M   +
Sbjct: 270 ALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNAD 329

Query: 129 IVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +VTWN+LI G +          +F  M+    + D ++  S++ A  +  ++  G  LH+
Sbjct: 330 VVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHA 389

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           +++K G+  N  V + L+D+Y KC       R F  +  +DL+ W  +++ YALN     
Sbjct: 390 YVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVE 449

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  +  + M+ D     S++ +C  L S  + ++IH  ++++   +D ++   LVD
Sbjct: 450 ALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL-IDTVIQNELVD 508

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y K  N+  A RVF+ +  K+VVSW +M+     NG+  EAV+L R M +     D V 
Sbjct: 509 VYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVA 568

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L  ILS+  SLS   + R++H Y ++ G     SI  A+++ Y+ CG +  A   F  ++
Sbjct: 569 LLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIE 628

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
              L+ +TS+I AY  HG  K S+E+F KM    V PD I+FL +L ACSH GL+ EG R
Sbjct: 629 RKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRR 688

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +  +M  +Y + P  EHY CL D+LGR   +VEA++ +  M  EP ++   A + AC+ H
Sbjct: 689 FLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSH 748

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
               + + AA++LLELEP  P N  LVSNV+A +  W DV ++R  M+ +   K PGCSW
Sbjct: 749 SEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSW 808

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           IE+ G++H F + D+SHP+   +Y  L  V   +E  +
Sbjct: 809 IEMDGKVHKFTARDKSHPETKEIYEKLSEVTRKLERES 846



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 201/362 (55%), Gaps = 3/362 (0%)

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYF--RRMLLDNVRLDHITFNSLLRACVQA 175
           EK+FDEMR R    WN LI   ++ G   +  F  R M ++ V LD  +F  LL+AC + 
Sbjct: 116 EKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKL 175

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVM 234
            DI  G  LH  ++K+GF    F+ +ALV +Y K   +  A+R+FD    + D VLWN +
Sbjct: 176 RDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSI 235

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +S Y+ +      + +F  M++ G   + +T  S + +C     +KLG++IH  V+K + 
Sbjct: 236 LSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTH 295

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
             +V V  +L+ MYA+ G + +A R+   M   +VV+WN+++ G+ QN   +EA++   D
Sbjct: 296 SFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCD 355

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M+     PDEV+L S++++ G LS      ++HAY IK+G  + L + N LI+ YSKC  
Sbjct: 356 MIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNL 415

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
                + F  + E DL++WT+II  YA +    E++++F  +    +  D +    +L A
Sbjct: 416 TCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRA 475

Query: 475 CS 476
           CS
Sbjct: 476 CS 477



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 267/564 (47%), Gaps = 41/564 (7%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-N 128
           LK   K   ++ G +LH  ++KLG  +   + N ++ +Y K       ++LFD  + + +
Sbjct: 169 LKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGD 228

Query: 129 IVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            V WN+++S     G ++     FR M +     +  T  S L AC      ++G+ +H+
Sbjct: 229 AVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHA 288

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            +LK       +V +AL+ +Y +CG + +A R+   +   D+V WN ++  Y  N +   
Sbjct: 289 AVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKE 348

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+  F  M   G K D  + +S++ + G L +   G ++H  VIK  +D ++LV  +L+D
Sbjct: 349 ALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLID 408

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K        R F  M  K+++SW T++ G+  N    EA++L RD+ +     DE+ 
Sbjct: 409 MYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMM 468

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L SIL +C  L      +++H + ++ G+   + I+N L++ Y KC ++  A + F S+K
Sbjct: 469 LGSILRACSVLKSMLIVKEIHCHILRKGLIDTV-IQNELVDVYGKCRNMGYASRVFESIK 527

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V+WTS+I + A +G   E++E+F +M    +  DS+A L +LSA +    + +G  
Sbjct: 528 GKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGRE 587

Query: 487 YFNLMISDYHILPDS------EHYTCLTDL---------LGRVGLL-------------- 517
               ++     L  S      + Y C  DL         + R GLL              
Sbjct: 588 IHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGC 647

Query: 518 ----VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE---PSKPVNY 570
               VE ++ +    + P   +  A + AC   G +   +    K++ELE      P +Y
Sbjct: 648 GKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFL-KIMELEYKLEPWPEHY 706

Query: 571 ALVSNVYASERCWFDVARLRKMMR 594
             + ++     C  +     KMM+
Sbjct: 707 VCLVDMLGRANCVVEAFEFVKMMK 730



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 203/395 (51%), Gaps = 6/395 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  +  S +   L  G +LH++++K G  + L + N ++ +Y KC     M + F  M  
Sbjct: 369 TSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHE 428

Query: 127 RNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +++++W T+I+G  + +C       FR +    + +D +   S+LRAC     + + + +
Sbjct: 429 KDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEI 488

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  IL+ G  ++  + + LVD+YGKC  +  A RVF+ +  +D+V W  M+S  ALN   
Sbjct: 489 HCHILRKGL-IDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNE 547

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ +F  M   G+  D      ++++  +L + K GR+IHG ++++ F L+  +A ++
Sbjct: 548 NEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAV 607

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           VDMYA  G++  A  VFD +  K ++ + +M+  +G +G G+ +V+L   M   +  PD 
Sbjct: 608 VDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDH 667

Query: 365 VTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           ++  ++L +C    +  E R+ +    ++  ++ +      L++   +   +  A +   
Sbjct: 668 ISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVK 727

Query: 424 SVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            +K EP    W +++ A   H   KE  E+  + L
Sbjct: 728 MMKTEPTTEVWCALLAACRSHS-EKEIGEIAAQRL 761


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 207/649 (31%), Positives = 337/649 (51%), Gaps = 101/649 (15%)

Query: 89  IMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG---- 144
           ++KLGL   + L N ++++Y K     D   LF+EM V+   +WNT++SG    G     
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 145 -----------------------------NVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
                                        +    F  M+ D V     T  ++L +C   
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
               +G+++HSF++K+G      V+++L+++Y K G ++ A+ VFD +  R+   WN M+
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 236 SCYALNC-LGDGAIAVFNLM--------------------------------RLEGMKGD 262
           S + +NC   D A+A F L+                                +   +K D
Sbjct: 181 SLH-MNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPD 239

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD--------------------------- 295
            F+ +S +++C  L     G+QIHG +++  FD                           
Sbjct: 240 RFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIE 299

Query: 296 ------LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
                 LDV+  T+L++ Y K G+I  A ++F+ +   +VV+W  M+VG+ QNG   +A+
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAI 359

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
           ++ + M+     P+  TLA++LS+  S++     +Q+HA AI++G     S+ NAL   Y
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMY 419

Query: 410 SKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           +K GSI GA + F  +++  D V+WTS+I A A HGL +E+IE+FE+ML+  ++PD I +
Sbjct: 420 AKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITY 479

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLSAC+HGGLV +G  YF+LM + + I P   HY C+ DL GR GLL EAY  + +MP
Sbjct: 480 VGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMP 539

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           +EP     G+ + +CKV+ ++ LAK AAE+LL +EP+    Y+ ++NVY+S   W D A+
Sbjct: 540 MEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAK 599

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           +RK+M+     K  G SW++I  + H F   D  HPQ   +Y M+  ++
Sbjct: 600 IRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIW 648



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 166/365 (45%), Gaps = 50/365 (13%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMK----------------------LGLCNKLSLQNQV 104
           + AL   A    L  GKQ+H +I++                      + +  ++  Q+ +
Sbjct: 244 ASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGI 303

Query: 105 -----------LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFR 151
                      L+ YVK        ++F+ ++  ++V W  +I G +  G N      F+
Sbjct: 304 SDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFK 363

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
            M+ +  R +  T  ++L A      +  G+++H+  ++ G  L+  V +AL  +Y K G
Sbjct: 364 TMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAG 423

Query: 212 FVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
            +  AR+VF+ +   RD V W  M+   A + LG+ AI +F  M   G+K D+ T+  ++
Sbjct: 424 SINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVL 483

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAK- 327
           ++C   G  + GR    L +K    +D  ++    +VD++ + G + +A +  + M  + 
Sbjct: 484 SACTHGGLVEQGRSYFDL-MKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEP 542

Query: 328 NVVSWNTMVVG--FGQNGD----GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +V++W +++      +N D      E + L+     G++      LA++ SSCG    + 
Sbjct: 543 DVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYS----ALANVYSSCGKWDDAA 598

Query: 382 ETRQV 386
           + R++
Sbjct: 599 KIRKL 603


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/600 (34%), Positives = 323/600 (53%), Gaps = 7/600 (1%)

Query: 70   LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            L V A    L+ GKQ+H  +M+ GL   +S+ N ++++YVK  +      +F +M   ++
Sbjct: 942  LTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDL 1001

Query: 130  VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADD-IEVGRRLHS 186
            ++WNT+ISG    G        F  +L D++  D  T  S+LRAC   +    +  ++H+
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHA 1061

Query: 187  FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
              +K G  L+ FVS+AL+D+Y K G +E+A  +F      DL  WN ++  Y ++     
Sbjct: 1062 CAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPK 1121

Query: 247  AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            A+ ++ LM+  G + D  T  +   + G L   K G+QIH +V+K+ F+LD+ V + ++D
Sbjct: 1122 ALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLD 1181

Query: 307  MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            MY K G ++ A RVF  + + + V+W TM+ G  +NG    A+     M      PDE T
Sbjct: 1182 MYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYT 1241

Query: 367  LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             A+++ +C  L+   + RQ+HA  +K        +  +L++ Y+KCG+I  A   F    
Sbjct: 1242 FATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTN 1301

Query: 427  EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
               + +W ++I   A HG +KE+++ F+ M S  V PD + F+ VLSACSH GLVSE   
Sbjct: 1302 TRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYE 1361

Query: 487  YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
             F  M  +Y I P+ EHY+CL D L R G + EA  +++SMP E  +      + AC+V 
Sbjct: 1362 NFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQ 1421

Query: 547  GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
                  K  AEKLL LEPS    Y L+SNVYA+   W +VA  R MMR     K PG SW
Sbjct: 1422 VDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSW 1481

Query: 607  IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV----LDKEMDECTLW 662
            +++  ++H FV+ DRSH +   +Y  +  +   + E       +     +++E  EC+L+
Sbjct: 1482 VDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLY 1541



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 201/400 (50%), Gaps = 4/400 (1%)

Query: 128  NIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            +++ WN  +S  +  G        F  M+   V  D +TF  +L      + +E+G+++H
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 186  SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +++ G      V + L+++Y K G V  AR VF ++   DL+ WN M+S   L+ L +
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 246  GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL-GSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             ++ +F  +  + +  D FT +S++ +C +L G   L  QIH   +K    LD  V+T+L
Sbjct: 1019 CSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTAL 1078

Query: 305  VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
            +D+Y+K G +++A  +F      ++ SWN ++ G+  +GD  +A++L   M +     D+
Sbjct: 1079 IDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQ 1138

Query: 365  VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            +TL +   + G L    + +Q+HA  +K G    L + + +++ Y KCG +  A + F  
Sbjct: 1139 ITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSE 1198

Query: 425  VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +  PD V WT++I     +G  + ++  + +M    V+PD   F  ++ ACS    + +G
Sbjct: 1199 IPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQG 1258

Query: 485  LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
             R  +  I   +   D    T L D+  + G + +A  L 
Sbjct: 1259 -RQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1297



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 208/454 (45%), Gaps = 46/454 (10%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLI 136
            L  GK+ H+ I+  G      + N ++ +Y KC +     KLFD      R++VTWN ++
Sbjct: 672  LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 137  SGII------NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
            S +       + G ++    RR ++   R    T   + + C+ +        LH + +K
Sbjct: 732  SALAAHADKSHDGFHLFRLLRRSVVSTTRH---TLAPVFKMCLLSASPSASESLHGYAVK 788

Query: 191  VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            +G   + FV+ ALV++Y K G + +AR +FD +  RD+VLWNVM+  Y   CL   A+ +
Sbjct: 789  IGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLL 848

Query: 251  FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
            F+     G + D  T  +L          K  + I  L   +++      AT L  MY  
Sbjct: 849  FSEFHRTGFRPDDVTLRTLSRVV------KCKKNILELKQFKAY------ATKLF-MYDD 895

Query: 311  NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            +G+              +V+ WN  +  F Q G+  EAV    DM+      D +T   +
Sbjct: 896  DGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVM 941

Query: 371  LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
            L+    L+     +Q+H   +++G+   +S+ N LIN Y K GS++ A   FG + E DL
Sbjct: 942  LTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDL 1001

Query: 431  VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
            ++W ++I      GL + S+ +F  +L  ++ PD      VL ACS      EG  Y   
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSS----LEGGYYLAT 1057

Query: 491  MIS----DYHILPDSEHYTCLTDLLGRVGLLVEA 520
             I        ++ DS   T L D+  + G + EA
Sbjct: 1058 QIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 134/259 (51%), Gaps = 3/259 (1%)

Query: 69   ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
            A K +     L+QGKQ+H+ ++K G    L + + VL +Y+KC   +   ++F E+   +
Sbjct: 1144 AAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPD 1203

Query: 129  IVTWNTLISGIINCGGNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
             V W T+ISG +  G      F   +M L  V+ D  TF +L++AC     +E GR++H+
Sbjct: 1204 DVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHA 1263

Query: 187  FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             I+K+    + FV ++LVD+Y KCG +EDAR +F     R +  WN M+   A +     
Sbjct: 1264 NIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKE 1323

Query: 247  AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+  F  M+  G+  D  TF  ++++C   G  S+     + +      + ++   + LV
Sbjct: 1324 ALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLV 1383

Query: 306  DMYAKNGNIDDACRVFDGM 324
            D  ++ G I++A +V   M
Sbjct: 1384 DALSRAGRIEEAEKVISSM 1402



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 30/310 (9%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--L 224
           S+LR  + A D+ +G+R H+ IL  G   + FV++ L+ +Y KCG +  AR++FD     
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 225 CRDLVLWNVMVSCYALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            RDLV WN ++S  A +         +F L+R   +     T + +   C    S     
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            +HG  +K     DV VA +LV++YAK G I +A  +FDGM  ++VV WN M+  +    
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+ L  +  +  F PD+VTL ++           E +Q  AYA K           
Sbjct: 841 LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK----------- 889

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
             +  Y   GS              D++ W   +  +   G + E+++ F  M++  V  
Sbjct: 890 --LFMYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVAC 933

Query: 464 DSIAFLEVLS 473
           D + F+ +L+
Sbjct: 934 DGLTFVVMLT 943


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 320/568 (56%), Gaps = 3/568 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL    + G ++ G++ H  ++K+GL +   +   ++ +Y KC   D   +++D+M   +
Sbjct: 119 ALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLD 178

Query: 129 IVTWNTLISGIINCGGNVTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVGRRLHS 186
             T N LIS     G  V  +   M + N+  R +H T++++L  C     I+ G++LH+
Sbjct: 179 AATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHA 238

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            ++K+ +     V +AL+ LY KCG +E+A  VF+ +  R+++ W   ++ +  +     
Sbjct: 239 HVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKK 298

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+  F++MR  G++ + FTFS ++ SCG +     GR  H  VIK+     V V T+++D
Sbjct: 299 ALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIID 358

Query: 307 MYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           MY+  G +D+A + F  M  A + VSWN ++ G+  N    +A++    M++     +E 
Sbjct: 359 MYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEF 418

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T ++I  +C S      T Q+H+  IK+ V++ L + ++LI AY++CGS+  A+Q F  +
Sbjct: 419 TYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQI 478

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            + D+V+W SII AY+ +G   ++I +  KM+    +P S  FL VLSACSH GLV EG 
Sbjct: 479 SDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQ 538

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            +F  M+ DY I P+  H +C+ D+LGR G L  A D +  + ++P +      + AC+ 
Sbjct: 539 EFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRY 598

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           + ++ +A++ AEK+L+LEP+    Y  +SN+YA    W D    R++M      K PGCS
Sbjct: 599 NSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCS 658

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           WIE+  +++ F S D++HP+   +Y  L
Sbjct: 659 WIEVNNKMYKFFSHDKAHPEMPKVYEKL 686



 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 299/570 (52%), Gaps = 34/570 (5%)

Query: 41   DRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL 100
            +R+ +    RN  T H +  S+   Y++A+ + A+   L +G+ LH+H++ +GL      
Sbjct: 782  NRANVYRVYRNIST-HRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYF 840

Query: 101  QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNV 158
              +++  Y +C    +  KLFD++   NI  W  L       G        F  M  + +
Sbjct: 841  AAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGL 900

Query: 159  RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            R +     S+L+AC    D   G  +H+ ILK  F  + ++ SAL+ +Y KCG VE A R
Sbjct: 901  RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR 960

Query: 219  VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
            VFD ++ +DLV+ N MVS YA +     A+ +   M+  G+K +  ++++L+     +G 
Sbjct: 961  VFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 1020

Query: 279  SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              +  ++  L+     + D                               VVSW +++ G
Sbjct: 1021 KSMVSEVFRLMTANGVEPD-------------------------------VVSWTSVISG 1049

Query: 339  FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            F QN    E     ++ML   FCP  VT++S+L +C +++     +++H YA+  GV+  
Sbjct: 1050 FVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKD 1109

Query: 399  LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            + + +AL++ Y+KCG I+ A   F  + E + VTW S+I  YA HG   E+IE+F +M  
Sbjct: 1110 VYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE 1169

Query: 459  HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
               + D + F  VL+ACSH G+V  G   F  M   Y I P  EHY C+ DLLGR G L 
Sbjct: 1170 SDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLS 1229

Query: 519  EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
            EAYDL+ +MP+EP     GA +GAC+ HG+I LA+ AAE L ELEP  P +  L+SN+YA
Sbjct: 1230 EAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYA 1289

Query: 579  SERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
                W + A+++KMM+     K PGCSWIE
Sbjct: 1290 DAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 210/404 (51%), Gaps = 5/404 (1%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T   H  YS  L V      +Q+GKQLH+H++K+   ++ ++ N +L +Y KC   ++ E
Sbjct: 210 TRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAE 269

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
            +F+ +R RNI++W   I+G    G        F  M    +  +  TF+ +L +C    
Sbjct: 270 IVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVK 329

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
           D   GR  H+ ++K G     FV +A++D+Y   G +++A + F ++      V WN ++
Sbjct: 330 DFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALI 389

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + Y LN   + A+  F  M  E +  + FT+S++  +C +  S     QIH  +IK + +
Sbjct: 390 AGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVE 449

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            ++ VA+SL++ Y + G++++A +VF  ++  +VVSWN+++  + QNGD  +A+ LLR M
Sbjct: 450 SNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKM 509

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGS 414
           ++    P   T  ++LS+C    +  E ++     +++  +Q   +  + +++   + G 
Sbjct: 510 IEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQ 569

Query: 415 IAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           +  AL     +  +P    W  ++ A  ++   + +  V EK+L
Sbjct: 570 LENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKIL 613



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 175/311 (56%), Gaps = 1/311 (0%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S L  C +   +E+GRR H F++K+G G + FV ++L+D+Y KCG V+ A RV+D++   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D    N ++S YA N     A  VF  +   G + +++T+S+++  CGT+ + + G+Q+H
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             V+K  +  +  V  +L+ +Y+K G +++A  VF+ +  +N++SW   + GF Q+GD +
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFK 297

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           +A+K    M +    P+E T + +L+SCG +    + R  H   IK G+ + + +  A+I
Sbjct: 298 KALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAII 357

Query: 407 NAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           + YS  G +  A + F  + +    V+W ++I  Y  +   ++++E F +M+   V  + 
Sbjct: 358 DMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNE 417

Query: 466 IAFLEVLSACS 476
             +  +  ACS
Sbjct: 418 FTYSNIFKACS 428


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 203/583 (34%), Positives = 321/583 (55%), Gaps = 18/583 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+  +Q H+ I+ LG      L  +++  Y           +FD +  +++  WN+LI+G
Sbjct: 43  LKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLING 102

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +          +F +M    V LD  T  ++ + C +  D+  G+ +H   LK GF L+
Sbjct: 103 FVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLD 162

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI-----AVF 251
             V+++L+ +Y KCG   +  ++FDE+  R++  WNV++S YA +  GD           
Sbjct: 163 VIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADS--GDRNFDKEVSGFV 220

Query: 252 NLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDL----DVLVATSLVD 306
             M++EG+K D FT SSL+  C G +G    GR++HG +++    +    +V +   L+D
Sbjct: 221 KDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLID 280

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEV 365
           MY+++  +D   RVFD M  +NV +W  M+ G  QNG   E + L  +M ++    P++V
Sbjct: 281 MYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKV 340

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF--G 423
           +L S+L +C +++     +Q+H YAI+      +S+ NALI+ YSKCGS+  A Q F  G
Sbjct: 341 SLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFG 400

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S +  D ++W+S+I  Y  HG  +E++ V+ KML    +PD I  + VLSACS  GLV E
Sbjct: 401 SFRR-DPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDE 459

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL  +   I+ Y I P  E   C+ D+LGR G L +A D + +MP+EP     GA + A 
Sbjct: 460 GLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSAS 519

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            +HG+  +   A   L++LEP  P NY  +SN++AS R W  V+ +R MM+D C  K PG
Sbjct: 520 IIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKTPG 579

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS 646
           CSWI I    H F ++D+ HP +  +Y +L  +  LM+   VS
Sbjct: 580 CSWISINNTTHFFYAADKLHPCSKSIYELLGGLILLMKGPAVS 622


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 185/529 (34%), Positives = 297/529 (56%), Gaps = 6/529 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG-IINCGGNVT-PYFRRMLLDNVR 159
           N ++ +Y KC+      K+FD M  RN+V+W  L+SG ++N   N +   F  M    + 
Sbjct: 408 NYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIY 467

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            +  TF++ L+AC   + +E G ++H F LK+GF +   V ++LVD+Y KCG + +A +V
Sbjct: 468 PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 527

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK--GDYFTFSSLVNSCGTLG 277
           F  ++ R L+ WN M++ Y     G  A+A F +M+   +K   D FT +SL+ +C + G
Sbjct: 528 FRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTG 587

Query: 278 SSKLGRQIHGLVIKQSFDL--DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
               G+QIHG +++  F       +  SLVD+Y K GN+  A + FD +  K ++SW+++
Sbjct: 588 MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSL 647

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           ++G+ Q GD  EA+ L + + + S   D   L+SI+      ++  + +Q+ A  +K   
Sbjct: 648 ILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPS 707

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
               S+ N+L++ Y KCG +  A +CF  ++  D+++WT +I  Y  HGL K+++ +F K
Sbjct: 708 GLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNK 767

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           ML H + PD + +L VLSACSH G++ EG   F+ ++    I P  EHY C+ DLLGR G
Sbjct: 768 MLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAG 827

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            L EA  L+ +MPI+P        +  C+VHG I L K   + LL ++   P NY ++SN
Sbjct: 828 RLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSN 887

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           +Y     W +    R++       K  G SW+EI  E+H F S + SHP
Sbjct: 888 LYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHP 936



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 191/346 (55%), Gaps = 11/346 (3%)

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G GLN   S+ L+D+Y KC     A +VFD +  R++V W  ++S + LN   +G++++F
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M  +G+  + FTFS+ + +CG L + + G QIHG  +K  F++ V V  SLVDMY+K 
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC--PDEVTLAS 369
           G I++A +VF  M  ++++SWN M+ G+   G G  A+     M +      PDE TL S
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTS 578

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQ--AFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           +L +C S  +    +Q+H + +++G    +  +I  +L++ Y KCG++  A + F  +KE
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKE 638

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
             +++W+S+I  YA  G   E++ +F+++   + + DS     ++   +   L+ +G + 
Sbjct: 639 KTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQM 698

Query: 488 FNLMISDYHILP---DSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
             L++     LP   ++     L D+  + GL+ EA    A M ++
Sbjct: 699 QALVVK----LPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLK 740



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 203/387 (52%), Gaps = 8/387 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK       L++G Q+H   +K+G    + + N ++ +Y KC   ++ EK+F  M 
Sbjct: 473 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMV 532

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVG 181
            R++++WN +I+G ++   G      F  M    +  R D  T  SLL+AC     I  G
Sbjct: 533 GRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAG 592

Query: 182 RRLHSFILKVGFGL--NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +++H F+++ GF    +  ++ +LVDLY KCG +  AR+ FD++  + ++ W+ ++  YA
Sbjct: 593 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYA 652

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                  A+ +F  ++    + D F  SS++         + G+Q+  LV+K    L+  
Sbjct: 653 QEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETS 712

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V+ SLVDMY K G +D+A + F  M  K+V+SW  M+ G+G++G G++AV +   ML+ +
Sbjct: 713 VSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHN 772

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGA 418
             PDEV   ++LS+C    +  E  ++ +  ++  G++  +     +++   + G +  A
Sbjct: 773 IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEA 832

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHG 444
                ++  +P++  W +++     HG
Sbjct: 833 KHLVDTMPIKPNVGIWQTLLSLCRVHG 859



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  + V A F  LQQGKQ+ + ++KL    + S+ N ++ +Y+KC   D+ EK F EM++
Sbjct: 680 SSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQL 739

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +++++W  +I+G      G      F +ML  N+  D + + ++L AC  +  I+ G  L
Sbjct: 740 KDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL 799

Query: 185 HSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS-CYALN 241
            S +L+  G        + +VDL G+ G +++A+ + D +  +  V +W  ++S C    
Sbjct: 800 FSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHG 859

Query: 242 CLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQI 285
            +  G      L+R++G    +Y   S+L    G        R++
Sbjct: 860 DIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNAREL 904


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 294/524 (56%), Gaps = 11/524 (2%)

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+  +N +ISG I  G       ++++M  + V  D  TF   ++AC+   +I   +++H
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI---KKIH 159

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             + K G  L+ F+ SALV+ Y K G +E A+  F+E+  RD+VLWN MV+ YA     +
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             +  F  M  E +    FT +  ++    +G    GR IHG  +K  +D  V V+ SL+
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLI 279

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K   I+DA  +F+ M  K++ SWN++V    Q GD    ++LL  ML     PD V
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAF------LSIENALINAYSKCGSIAGAL 419
           T+ ++L +C  L+     R++H Y I +G+         + ++NA+I+ Y+KCGS+  A 
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D+ +W  +I  Y  HG   E++E+F +M    ++PD + F+ VLSACSH G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            VS+G  +   M S Y + P  EHYTC+ D+LGR G L EAY+L  +MPIE       A 
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC++H    LA+ AA+++ ELEP    +Y L+SNVY +   + +V  +R  MR     
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           K PGCSWIE+   +H FVS+DR+HP+A  +YA L ++   + E+
Sbjct: 580 KTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEH 623



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 215/421 (51%), Gaps = 20/421 (4%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           ITN    +      ++RN G + +        ++    + A    L+  K++H  + K G
Sbjct: 115 ITNGFPEEGFEFYQKMRNEGVMPDK-------FTFPCAIKACLDVLEI-KKIHGLLFKFG 166

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFR 151
           L   + + + +++ Y+K    +  +  F+E+ +R++V WN +++G    G    V   FR
Sbjct: 167 LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 226

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           RM  ++V     T    L       D+  GR +H F +K+G+     VS++L+D+YGKC 
Sbjct: 227 RMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCK 286

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            +EDA  +F+ +  +D+  WN +VS +      DG + + + M   G++ D  T ++++ 
Sbjct: 287 CIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLP 346

Query: 272 SCGTLGSSKLGRQIHGLVI-----KQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +C  L +   GR+IHG +I     K   D+ DVL+  +++DMYAK G++ DA  VF+ M+
Sbjct: 347 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS 406

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            K+V SWN M++G+G +G G EA+++   M +    PDEVT   +LS+C       + R 
Sbjct: 407 NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 466

Query: 386 VHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAF 442
                +K+      +IE+   +I+   + G +  A +   ++  E + V W +++ A   
Sbjct: 467 F-LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRL 525

Query: 443 H 443
           H
Sbjct: 526 H 526



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 182/389 (46%), Gaps = 31/389 (7%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A  G L  G+ +H   MK+G  + +++ N ++ +Y KCK  +D  ++F+ MR ++I
Sbjct: 244 LSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 303

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            +WN+++S    CG +        RML   ++ D +T  ++L AC     +  GR +H +
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363

Query: 188 ILKVGFGL------NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           ++  G G       +  + +A++D+Y KCG + DA  VF+ +  +D+  WN+M+  Y ++
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
             G+ A+ +F+ M    +K D  TF  ++++C   G    GR    + +K  +D+   + 
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL-VQMKSKYDVAPTIE 482

Query: 302 --TSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVG--FGQNGDGREAVKLLRDML 356
             T ++DM  + G +D+A  +   M  + N V W  ++      ++    E        L
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL 542

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAY------------AIKNGVQAFLSIENA 404
           +   C   V ++++  + G      E R                  +KNGV  F+S + A
Sbjct: 543 EPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRA 602

Query: 405 LINA---YSKCGSIAGALQCFGSVKEPDL 430
              A   Y+   S+   L   G V  PD+
Sbjct: 603 HPEAXSIYAGLNSLTARLXEHGYV--PDV 629


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 307/558 (55%), Gaps = 6/558 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G ++H   +K G    + +   ++H+Y + KA  +   LFDEM VR++ +WN +ISG   
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228

Query: 142 CGGNVTPYFRRMLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            G          L + +R +D +T  SLL AC +A D   G  +HS+ +K G     FVS
Sbjct: 229 SGNAKEAL---TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS 285

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + L+DLY + G + D ++VFD +  RDL+ WN ++  Y LN     AI++F  MRL  ++
Sbjct: 286 NKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ 345

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACR 319
            D  T  SL +    LG  +  R + G  +++ + L D+ +  ++V MYAK G +D A  
Sbjct: 346 PDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLS 378
           VF+ +   +V+SWNT++ G+ QNG   EA+++   M + G    ++ T  S+L +C    
Sbjct: 406 VFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAG 465

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              +  ++H   +KNG+   + +  +L + Y KCG +  AL  F  +   + V W ++I 
Sbjct: 466 ALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIA 525

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            + FHG  ++++ +F++ML   V+PD I F+ +LSACSH GLV EG   F +M +DY I 
Sbjct: 526 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGIT 585

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  +HY C+ D+ GR G L  A   + SM ++P +   GA + AC+VHG++ L K A+E 
Sbjct: 586 PSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEH 645

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L E+EP     + L+SN+YAS   W  V  +R +       K PG S +E+  ++  F +
Sbjct: 646 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYT 705

Query: 619 SDRSHPQAVHMYAMLCTV 636
            +++HP    MY  L  +
Sbjct: 706 GNQTHPMYEEMYRELTAL 723



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 231/459 (50%), Gaps = 21/459 (4%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ  K LH+ ++       + +  +++++Y            FD ++ R++  WN +ISG
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 139 IINCGGNVTPYFR----RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
                GN +   R     ML   +  D+ TF S+L+AC    D   G ++H   LK GF 
Sbjct: 127 -YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFM 182

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + +V+++L+ LY +   V +AR +FDE+  RD+  WN M+S Y  +     A+ + N +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R      D  T  SL+++C   G    G  IH   IK   + ++ V+  L+D+YA+ G +
Sbjct: 243 R----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRL 298

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT---LASIL 371
            D  +VFD M  ++++SWN+++  +  N     A+ L ++M      PD +T   LASIL
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358

Query: 372 SSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           S  G +  +C  R V  + ++ G     ++I NA++  Y+K G +  A   F  +   D+
Sbjct: 359 SQLGDIR-AC--RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDV 415

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           ++W +II  YA +G + E+IE++  M     +  +   ++ VL ACS  G + +G++   
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 475

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            ++ +   L D    T L D+ G+ G L +A  L   +P
Sbjct: 476 RLLKNGLYL-DVFVVTSLADMYGKCGRLEDALSLFYQIP 513



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 214/414 (51%), Gaps = 16/414 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    + G   +G  +HS+ +K GL ++L + N+++ +Y +     D +K+FD M VR++
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDL 313

Query: 130 VTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WN++I    +          F+ M L  ++ D +T  SL     Q  DI   R +  F
Sbjct: 314 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373

Query: 188 ILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            L+ G+ L +  + +A+V +Y K G V+ AR VF+ +   D++ WN ++S YA N     
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433

Query: 247 AIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI ++N+M  EG +  +  T+ S++ +C   G+ + G ++HG ++K    LDV V TSL 
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K G ++DA  +F  +   N V WNT++   G +G G +AV L ++ML     PD +
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553

Query: 366 TLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           T  ++LS+C    +  E +          G+   L     +++ Y + G +  AL+   S
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613

Query: 425 VK-EPDLVTWTSIIGAYAFHG---LSKESIE-VFEKMLSHAVRPDSIAFLEVLS 473
           +  +PD   W +++ A   HG   L K + E +FE      V P+ + +  +LS
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFE------VEPEHVGYHVLLS 661



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 170/318 (53%), Gaps = 17/318 (5%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           ++L R C    +++  + LH+ ++      N  +S+ LV+LY   G V  AR  FD +  
Sbjct: 58  HTLFRYCT---NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQN 114

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           RD+  WN+M+S Y         I  F+L  L  G+  DY TF S++ +C T+     G +
Sbjct: 115 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNK 171

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  F  DV VA SL+ +Y++   + +A  +FD M  +++ SWN M+ G+ Q+G+
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231

Query: 345 GREAVKL---LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
            +EA+ L   LR M       D VT+ S+LS+C           +H+Y+IK+G+++ L +
Sbjct: 232 AKEALTLSNGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            N LI+ Y++ G +    + F  +   DL++W SII AY  +     +I +F++M    +
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 344

Query: 462 RPDSIAFLEVLSACSHGG 479
           +PD +  + + S  S  G
Sbjct: 345 QPDCLTLISLASILSQLG 362



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 13/220 (5%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           +L   C  L S+K    +H  ++      +V ++  LV++Y   GN+  A   FD +  +
Sbjct: 59  TLFRYCTNLQSAKC---LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLR-DMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +V +WN M+ G+G+ G+  E ++     ML     PD  T  S+L +C ++    +  ++
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---IDGNKI 172

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H  A+K G    + +  +LI+ YS+  ++  A   F  +   D+ +W ++I  Y   G +
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNA 232

Query: 447 KESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGL 485
           KE++      LS+ +R  DS+  + +LSAC+  G  + G+
Sbjct: 233 KEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDFNRGV 267


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/600 (31%), Positives = 324/600 (54%), Gaps = 43/600 (7%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMR-----VRNIVTWNTLISGIINCGGNVTPY--FRRML 154
           N ++  Y +   F++  K F EM        N+V+W  LI+G    G +      FR+M+
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFV 213
           L+ V+ + IT  S + AC     +  GR +H + +KV     +  V ++LVD Y KC  V
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN-- 271
           E ARR F  +   DLV WN M++ YAL    + AI + + M+ +G++ D  T++ LV   
Sbjct: 415 EVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGF 474

Query: 272 ---------------------------------SCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                                            +CG + + KLG++IHG V++   +L  
Sbjct: 475 TQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELST 534

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V ++L+ MY+   +++ AC VF  ++ ++VV WN+++    Q+G    A+ LLR+M   
Sbjct: 535 GVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLS 594

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           +   + VT+ S L +C  L+   + +++H + I+ G+     I N+LI+ Y +CGSI  +
Sbjct: 595 NVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKS 654

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  + + DLV+W  +I  Y  HG   +++ +F++  +  ++P+ I F  +LSACSH 
Sbjct: 655 RRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHS 714

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL+ EG +YF +M ++Y + P  E Y C+ DLL R G   E  + +  MP EP +   G+
Sbjct: 715 GLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGS 774

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +GAC++H +  LA++AA  L ELEP    NY L++N+Y++   W D A++R +M++   
Sbjct: 775 LLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGV 834

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
            K PGCSWIE+  ++H+FV  D SHP    + A + +++  ++E       N + +++DE
Sbjct: 835 TKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDE 894



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 221/436 (50%), Gaps = 43/436 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L+   K   L+ G Q+H+ ++  G+     L +++L VY +    +D  ++FD+M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+ +W  ++      G        F  M+ + VR DH  F  + +AC +  +  VG+ 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           ++ ++L +GF  N  V  +++D++ KCG ++ ARR F+E+  +D+ +WN+MVS Y     
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+   + M+L G+K D  T++++++                                
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISG------------------------------- 300

Query: 304 LVDMYAKNGNIDDACRVFDGMTA-----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
               YA++G  ++A + F  M        NVVSW  ++ G  QNG   EA+ + R M+  
Sbjct: 301 ----YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAG 417
              P+ +T+AS +S+C +LS+    R++H Y IK   + + L + N+L++ Y+KC S+  
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + FG +K+ DLV+W +++  YA  G  +E+IE+  +M    + PD I +  +++  + 
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 478 GGLVSEGLRYFNLMIS 493
            G     L +F  M S
Sbjct: 477 YGDGKAALEFFQRMHS 492



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 228/514 (44%), Gaps = 73/514 (14%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++E     H  + +  K  ++    + GK ++ +++ +G      ++  +L +++KC   
Sbjct: 182 VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRM 241

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D   + F+E+  +++  WN ++SG  + G           M L  V+ D +T+N+++   
Sbjct: 242 DIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGY 301

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            Q+   E   +   + L++G GL  F                            ++V W 
Sbjct: 302 AQSGQFEEASK---YFLEMG-GLKDFKP--------------------------NVVSWT 331

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK- 291
            +++    N     A++VF  M LEG+K +  T +S V++C  L   + GR+IHG  IK 
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM---------------- 335
           +  D D+LV  SLVD YAK  +++ A R F  +   ++VSWN M                
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 336 -------------------VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
                              V GF Q GDG+ A++  + M      P+  T++  L++CG 
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQ 511

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +      +++H Y ++N ++    + +ALI+ YS C S+  A   F  +   D+V W SI
Sbjct: 512 VRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSI 571

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I A A  G S  ++++  +M    V  +++  +  L ACS    + +G      +I    
Sbjct: 572 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII---R 628

Query: 497 ILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMP 528
              D+ ++    L D+ GR G + ++  +   MP
Sbjct: 629 CGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 662



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 132/281 (46%), Gaps = 3/281 (1%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           ++S++  C  L + +LG Q+H  ++    D+   + + L+++Y + G ++DA R+FD M+
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +NV SW  ++  +   GD  E +KL   M+     PD      +  +C  L      + 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           V+ Y +  G +    ++ ++++ + KCG +  A + F  ++  D+  W  ++  Y   G 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            K++++    M    V+PD + +  ++S  +  G   E  +YF  M       P+   +T
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIE---PRSDTLGAFIGAC 543
            L     + G   EA  +   M +E   P S T+ + + AC
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 8/213 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   +K   L+QGK++H  I++ GL     + N ++ +Y +C +     ++FD M  R+
Sbjct: 606 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 129 IVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+WN +IS  G+   G +    F++     ++ +HITF +LL AC  +  IE G +   
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 187 FILKVGFGLNCFVS--SALVDLYGKCG-FVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            ++K  + ++  V   + +VDL  + G F E    +       +  +W  ++    ++C 
Sbjct: 726 -MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCN 784

Query: 244 GDGA-IAVFNLMRLEGM-KGDYFTFSSLVNSCG 274
            D A  A   L  LE    G+Y   +++ ++ G
Sbjct: 785 PDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/537 (33%), Positives = 302/537 (56%), Gaps = 24/537 (4%)

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
           ++ K  +   +LFD++  R++++WN++ISG ++ G        +++M+   + +D  T  
Sbjct: 58  IEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 117

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L  C ++  + +G+ +HS  +K  F      S+ L+D+Y KCG ++ A RVF+++  R
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 177

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W  M++ Y  +   DGAI +   M  EG+K D    +S++++C   GS   G+ +H
Sbjct: 178 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 237

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +   +   ++ V  +L+DMYAK G+++ A  VF  M  K+++SWNTMV          
Sbjct: 238 DYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV---------- 287

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
                      G   PD  T+A IL +C SLS     +++H Y ++NG  +   + NAL+
Sbjct: 288 -----------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALV 336

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KCG +  A   F  +   DLV+WT +I  Y  HG   E+I  F +M    + PD +
Sbjct: 337 DLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEV 396

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
           +F+ +L ACSH GL+ +G R+F +M +D++I P  EHY C+ DLL R G L +AY  + +
Sbjct: 397 SFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIET 456

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           +PI P +   GA +  C+++  I LA+  AE++ ELEP     Y L++N+YA    W +V
Sbjct: 457 LPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEV 516

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS-SDRSHPQAVHMYAMLCTVFGLMEE 642
            R+R+ +      K PGCSWIEI G ++ FVS ++ SHP +  + ++L  +   M+E
Sbjct: 517 KRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 573



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 208/408 (50%), Gaps = 35/408 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK G L  GK +HS  +K     +++  N +L +Y KC   D   ++F++M  RN+V+W 
Sbjct: 124 AKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 183

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++I+G    G         ++M  + V+LD +   S+L AC ++  ++ G+ +H +I   
Sbjct: 184 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 243

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               N FV +AL+D+Y KCG +E A  VF  ++ +D++ WN MV                
Sbjct: 244 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG--------------- 288

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
                  +K D  T + ++ +C +L + + G++IHG +++  +  D  VA +LVD+Y K 
Sbjct: 289 ------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 342

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +  A  +FD + +K++VSW  M+ G+G +G G EA+    +M      PDEV+  SIL
Sbjct: 343 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 402

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EP 428
            +C S S   E      Y +KN       +E+   +++  S+ G+++ A +   ++   P
Sbjct: 403 YAC-SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAP 461

Query: 429 DLVTWTSII-GAYAFHGLSKESIEVFEKMLSHA--VRPDSIAFLEVLS 473
           D   W +++ G   +H      IE+ EK+      + P++  +  +L+
Sbjct: 462 DATIWGALLCGCRIYH-----DIELAEKVAERVFELEPENTGYYVLLA 504



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 166/382 (43%), Gaps = 83/382 (21%)

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL---------------------- 240
           LV  Y  CG +++ RRVFD +  +++ LWN MVS YA                       
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 241 -----------------------------NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                                        N L +  + ++  M   G+  D  T  S++ 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
            C   G+  LG+ +H L IK SF+  +  + +L+DMY+K G++D A RVF+ M  +NVVS
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           W +M+ G+ ++G    A+ LL+ M +     D V + SIL +C         + VH Y  
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
            N + + L + NAL++ Y+KCGS+ GA   F ++   D+++W +++G             
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------- 288

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-----SDYHILPDSEHYTC 506
                    ++PDS     +L AC+    +  G      ++     SD H+         
Sbjct: 289 --------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA------NA 334

Query: 507 LTDLLGRVGLLVEAYDLLASMP 528
           L DL  + G+L  A  L   +P
Sbjct: 335 LVDLYVKCGVLGLARLLFDMIP 356



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 142/272 (52%), Gaps = 23/272 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK +H +I    + + L + N ++ +Y KC + +    +F  M V++I
Sbjct: 221 LHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDI 280

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           ++WNT++       G + P            D  T   +L AC     +E G+ +H +IL
Sbjct: 281 ISWNTMV-------GELKP------------DSRTMACILPACASLSALERGKEIHGYIL 321

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           + G+  +  V++ALVDLY KCG +  AR +FD +  +DLV W VM++ Y ++  G+ AIA
Sbjct: 322 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 381

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDM 307
            FN MR  G++ D  +F S++ +C   G  + G +    ++K  F+++  +     +VD+
Sbjct: 382 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDL 440

Query: 308 YAKNGNIDDACRVFDGM-TAKNVVSWNTMVVG 338
            ++ GN+  A +  + +  A +   W  ++ G
Sbjct: 441 LSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 315/563 (55%), Gaps = 18/563 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+++H  ++K G    + + N ++ +Y +  +      LFD++  +++V+W+T+I     
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G         R M +  V+   I   S+     +  D+++G+ +H+++++ G    C  
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNG---KCGK 259

Query: 200 S-----SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCLGDGAIAVFNL 253
           S     +AL+D+Y KC  +  ARRVFD +    ++ W  M++ Y   N L +G + +F  
Sbjct: 260 SGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEG-VRLFVK 318

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M  EGM  +  T  SLV  CGT G+ +LG+ +H   ++  F L +++AT+ +DMY K G+
Sbjct: 319 MLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGD 378

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A  VFD   +K+++ W+ M+  + QN    EA  +   M      P+E T+ S+L  
Sbjct: 379 VRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMI 438

Query: 374 C---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           C   GSL +    + +H+Y  K G++  + ++ + ++ Y+ CG I  A + F    + D+
Sbjct: 439 CAKAGSLEMG---KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDI 495

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
             W ++I  +A HG  + ++E+FE+M +  V P+ I F+  L ACSH GL+ EG R F+ 
Sbjct: 496 SMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHK 555

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M+ ++   P  EHY C+ DLLGR GLL EA++L+ SMP+ P     G+F+ ACK+H +I 
Sbjct: 556 MVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIK 615

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           L +WAA++ L LEP K     L+SN+YAS   W DVA +R+ M+D    K PG S IE+ 
Sbjct: 616 LGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVN 675

Query: 611 GEIHTFVSSDRSHPQAVHMYAML 633
           G +H F+  DR HP A  +Y M+
Sbjct: 676 GLLHEFIMGDREHPDAKKVYEMI 698



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 203/382 (53%), Gaps = 14/382 (3%)

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNK--LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           V A+   L+ GK +H+++M+ G C K  + L   ++ +YVKC+      ++FD +   +I
Sbjct: 234 VLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASI 293

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++W  +I+  I+C         F +ML + +  + IT  SL++ C  A  +E+G+ LH+F
Sbjct: 294 ISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAF 353

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            L+ GF L+  +++A +D+YGKCG V  AR VFD    +DL++W+ M+S YA N   D A
Sbjct: 354 TLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEA 413

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             +F  M   G++ +  T  SL+  C   GS ++G+ IH  + KQ    D+++ TS VDM
Sbjct: 414 FDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDM 473

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA  G+ID A R+F   T +++  WN M+ GF  +G G  A++L  +M      P+++T 
Sbjct: 474 YANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITF 533

Query: 368 ASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
              L +C    +  E ++     VH +     V+ +      +++   + G +  A +  
Sbjct: 534 IGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHY----GCMVDLLGRAGLLDEAHELI 589

Query: 423 GSVK-EPDLVTWTSIIGAYAFH 443
            S+   P++  + S + A   H
Sbjct: 590 KSMPMRPNIAVFGSFLAACKLH 611



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 220/473 (46%), Gaps = 11/473 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQ-QGKQLHSHIMK---LGLCNKLSLQNQVLHVYVKCKAFDD 116
           S HSF +     S    F Q Q K    HI +   + L     L    +     C     
Sbjct: 19  SIHSFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHINLNETQQLHGHFIKTSSNCSYRVP 78

Query: 117 MEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
           +  L  E    N    + LI+  I  NC  +    +  M   +  +D+    S+L+AC  
Sbjct: 79  LAAL--ESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCL 136

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
                +G+ +H F++K GF  + FV +AL+ +Y + G +  AR +FD++  +D+V W+ M
Sbjct: 137 IPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTM 196

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK--Q 292
           +  Y  + L D A+ +   M +  +K       S+ +    L   KLG+ +H  V++  +
Sbjct: 197 IRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGK 256

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                V + T+L+DMY K  N+  A RVFDG++  +++SW  M+  +    +  E V+L 
Sbjct: 257 CGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLF 316

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             ML     P+E+T+ S++  CG+       + +HA+ ++NG    L +  A I+ Y KC
Sbjct: 317 VKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKC 376

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G +  A   F S K  DL+ W+++I +YA +    E+ ++F  M    +RP+    + +L
Sbjct: 377 GDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLL 436

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
             C+  G +  G ++ +  I    I  D    T   D+    G +  A+ L A
Sbjct: 437 MICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFA 488



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 5/199 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + AK G L+ GK +HS+I K G+   + L+   + +Y  C   D   +LF E   R+I
Sbjct: 436 LMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDI 495

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL-HS 186
             WN +ISG      G      F  M    V  + ITF   L AC  +  ++ G+RL H 
Sbjct: 496 SMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHK 555

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD--LVLWNVMVSCYALNCLG 244
            + + GF         +VDL G+ G +++A  +   +  R    V  + + +C     + 
Sbjct: 556 MVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIK 615

Query: 245 DGAIAVFNLMRLEGMKGDY 263
            G  A    + LE  K  Y
Sbjct: 616 LGEWAAKQFLSLEPHKSGY 634


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 188/582 (32%), Positives = 323/582 (55%), Gaps = 5/582 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+++H+H+++ G  +++ + N ++ +Y KC       K+FD M V + ++WN +I+G 
Sbjct: 214 RMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGH 273

Query: 140 IN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                C   +   F  ML + V+ + +T  S+  A     ++   + +H F +K GF ++
Sbjct: 274 FENHECEAGLE-LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAID 332

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
               ++L+ +Y   G + DA ++F  +  +D + W  M+S Y  N   D A+ V+ LM L
Sbjct: 333 VAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +  D  T +S + +C  LG   +G ++H L   + F   V+VA +L++MYAK+ +ID 
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  K+VVSW++M+ GF  N    EA+   R ML G   P+ VT  + LS+C +
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAA 511

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  +++HAY ++ G+ +   + NAL++ Y KCG  + A   F    E D+V+W  +
Sbjct: 512 TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIM 571

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           +  +  HGL   ++ +F +M+     PD + F+ +L ACS  G+V +G   F++M   + 
Sbjct: 572 LSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFS 631

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P+ +HY C+ DLL RVG L EAY+L+  MPI+P +   GA +  C++H  + L + AA
Sbjct: 632 IVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAA 691

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           + +LELEP+    + L+ ++Y     W  VAR+RK MR+    +  GCSW+E+ G  H F
Sbjct: 692 KVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAF 751

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           ++ D SHPQ   +  +L  ++  M+    +   ++ DKE+ E
Sbjct: 752 LTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSE 793



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 204/392 (52%), Gaps = 9/392 (2%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           L L N +L + V+        ++F +M  R++ +WN ++ G    G        + RML 
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             +R D  TF  +LR C    D  +GR +H+ +L+ GFG    V +ALV +Y KCG +  
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D + WN M++ +  N   +  + +F  M    ++ +  T +S+  + G 
Sbjct: 251 ARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGM 310

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L      +++HG  +K+ F +DV    SL+ MY   G + DA ++F  M  K+ +SW  M
Sbjct: 311 LSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL---ASILSSCGSLSISCETRQVHAYAIK 392
           + G+ +NG   +A+++   M   +  PD+VT+    +  +  G L +     ++H  A  
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGI---KLHELAQN 427

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G   ++ + NAL+  Y+K   I  A++ F  + E D+V+W+S+I  + F+  S E++  
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYY 487

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           F  ML H V+P+S+ F+  LSAC+  G +  G
Sbjct: 488 FRYMLGH-VKPNSVTFIAALSACAATGALRSG 518



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 172/322 (53%), Gaps = 13/322 (4%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           +RAC +AD         SF L++G        +A++ +  + G +  A RVF ++  RD+
Sbjct: 116 MRACARAD-----AEHPSFGLRLG--------NAMLSMLVRFGEIWHAWRVFAKMPERDV 162

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
             WNVMV  Y      + A+ ++  M   GM+ D +TF  ++ +CG +   ++GR++H  
Sbjct: 163 FSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAH 222

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V++  F  +V V  +LV MYAK G+I  A +VFDGM   + +SWN M+ G  +N +    
Sbjct: 223 VLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAG 282

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++L   ML+    P+ +T+ S+  + G LS     +++H +A+K G    ++  N+LI  
Sbjct: 283 LELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQM 342

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+  G +  A + F  ++  D ++WT++I  Y  +G   +++EV+  M  H V PD +  
Sbjct: 343 YTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTI 402

Query: 469 LEVLSACSHGGLVSEGLRYFNL 490
              L+AC+  G +  G++   L
Sbjct: 403 ASALAACACLGRLDVGIKLHEL 424



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G +LH      G    + + N +L +Y K K  D   ++F  M  +++V+W+++I
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 137 SGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           +G   N       Y+ R +L +V+ + +TF + L AC     +  G+ +H+++L+ G G 
Sbjct: 473 AGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGS 532

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
             +V +AL+DLY KCG    A   F     +D+V WN+M+S +  + LGD A+++FN M 
Sbjct: 533 EGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMV 592

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             G   D  TF +L+ +C   G    G ++ H +  K S   ++     +VD+ ++ G +
Sbjct: 593 EMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKL 652

Query: 315 DDACRVFDGMTAK-NVVSWNTMVVG 338
            +A  + + M  K +   W  ++ G
Sbjct: 653 TEAYNLINRMPIKPDAAVWGALLNG 677


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 203/582 (34%), Positives = 327/582 (56%), Gaps = 18/582 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNK-LSLQNQVLHVYVKCKAFDDME---KLF 121
           ++  ++   K GF + G  L   ++K G  +  + +  +++ ++VK  +  D+E   K+F
Sbjct: 159 FTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVF 218

Query: 122 DEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRL-DHITFNSLLRACVQADDI 178
           D+MR +N+VTW  +I+ +   G N      F  ML+ +  + D  T   L+  C +   +
Sbjct: 219 DKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFL 278

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+ LHS++++ G  L+  V  +LVD+Y KCG V++AR+VFD +   +++ W  +V+ Y
Sbjct: 279 SLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGY 338

Query: 239 ALNCLG--DGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
                G    A+ +F+ M L+G +  + FTFS ++ +C +L     G Q+HG  IK    
Sbjct: 339 VRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLS 398

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW----NTMVVGFGQNGDGREAVKL 351
               V   LV +YAK+G ++ A + FD +  KN+VS     +T V  F  N +      L
Sbjct: 399 AIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQ----DL 454

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
            R++          T AS+LS    +    +  Q+HA  +K G +  LS+ NALI+ YSK
Sbjct: 455 DREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSK 514

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CG+   ALQ F  +++ +++TWTSII  +A HG + +++E+F  ML   V+P+ + ++ V
Sbjct: 515 CGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAV 574

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           LSACSH GL+ E  ++F  M  ++ I+P  EHY C+ DLLGR GLL EA + + SMP + 
Sbjct: 575 LSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDA 634

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
            +     F+G+C+VH +  L + AA+ +LE EP  P  Y L+SN+YA+E  W DVA +RK
Sbjct: 635 DALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRK 694

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            M+     K  G SWIE+  ++H F   D  HP+A  +Y  L
Sbjct: 695 NMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKL 736



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 215/423 (50%), Gaps = 18/423 (4%)

Query: 28  QNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQAL-KVSAKFGFLQQGKQLH 86
           Q       N Q+  +++ +  L ++    ESTH+     S  L K   +      GK LH
Sbjct: 20  QQNFNHFNNPQQLHKAITTLNLTDT----ESTHNNKLITSSLLLKQCIRTKNTHLGKLLH 75

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--VRNIVTWNTLISGIIN--- 141
             +    L     L N ++ +Y K         +F  M    R++V+++++IS   N   
Sbjct: 76  HKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRN 135

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVS 200
           C   V  + + +L D V  +   F +++RAC++    + G  L  F+LK G F  +  V 
Sbjct: 136 CLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVG 195

Query: 201 SALVDLYGK-CGF--VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRL 256
             L+D++ K C    +E AR+VFD++  +++V W +M++  A     D AI +F  ++  
Sbjct: 196 CELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVS 255

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G   D FT + L++ C  +    LG+++H  VI+    LD+ V  SLVDMYAK G + +
Sbjct: 256 SGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQE 315

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDG--REAVKLLRDM-LQGSFCPDEVTLASILSS 373
           A +VFDGM   NV+SW  +V G+ + G G  REA+++  +M LQG   P+  T + +L +
Sbjct: 316 ARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKA 375

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C SL       QVH   IK G+ A   + N L++ Y+K G +  A +CF  + E +LV+ 
Sbjct: 376 CASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSE 435

Query: 434 TSI 436
           T +
Sbjct: 436 TVV 438



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 10/290 (3%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLV-NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           AI   NL   E    +    SSL+   C    ++ LG+ +H  +   +  LD L+  SL+
Sbjct: 35  AITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLI 94

Query: 306 DMYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRD-MLQGSFCP 362
            +Y+K+ +   A  +F  M  + ++VVS+++++  F  N +  +AV++    +LQ    P
Sbjct: 95  TLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYP 154

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIA---GA 418
           +E    +++ +C           +  + +K G   + + +   LI+ + K  S+A    A
Sbjct: 155 NEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESA 214

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSH 477
            + F  ++E ++VTWT +I   A +G + E+I++F +ML S    PD      ++S C+ 
Sbjct: 215 RKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAE 274

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
              +S G    + +I    +L D      L D+  + GL+ EA  +   M
Sbjct: 275 IQFLSLGKELHSWVIRSGLVL-DLCVGCSLVDMYAKCGLVQEARKVFDGM 323


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 306/546 (56%), Gaps = 2/546 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+  H+  +K+  C  + + + ++++Y K     +  K+FD M  RN V+W T+ISG  +
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186

Query: 142 --CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                     FR M  +    +   F S+L A    + +  G+++H   +K G      V
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSV 246

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV +Y KCG ++DA + F+    ++ + W+ M++ YA +   D A+ +F+ M L G+
Sbjct: 247 GNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGI 306

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           +   FTF  ++N+C  LG++  G+Q+H  ++K  F+  + V T+LVDMYAK  +I DA +
Sbjct: 307 RPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARK 366

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
            FD +   ++V W +M+ G+ QNG+  +A+ L   M      P+E+T+AS+L +C SL+ 
Sbjct: 367 GFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAA 426

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +Q+HA  +K G    + I +AL   Y+KCG +      F  +   D+++W ++I  
Sbjct: 427 LEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISG 486

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
            + +G  KE++E+FE+M     +PD + F+ +LSACSH GLV  G  YF +M  ++ + P
Sbjct: 487 LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDP 546

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ D+L R G L EA +   S  I+         +GAC+ + +  L  +A EKL
Sbjct: 547 RVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKL 606

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           +EL   +   Y L+S++Y++   W DV R+R+MM+     K PGCSWIE+   +H FV  
Sbjct: 607 MELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVK 666

Query: 620 DRSHPQ 625
           D+ HPQ
Sbjct: 667 DQMHPQ 672



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/428 (31%), Positives = 238/428 (55%), Gaps = 6/428 (1%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S  SF++  L+ +     LQ+GK LH+ I+K    + + + N ++++Y KC+   + + +
Sbjct: 5   SNRSFFTALLQYTHNRS-LQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFV 62

Query: 121 FDEMRVRNIVTWNTLISGIINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           F+ ++ +++V+WN +I+G    G     +V   F+RM  +N   +  TF  +  A     
Sbjct: 63  FERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLV 122

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D   GR  H+  +K+    + FV S+L+++Y K G   +AR+VFD +  R+ V W  M+S
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA   L   A+ +F LMR E    + F F+S++++         G+QIH + +K     
Sbjct: 183 GYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLS 242

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
            V V  +LV MYAK G++DDA + F+  + KN ++W+ M+ G+ Q+GD  +A+KL   M 
Sbjct: 243 IVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMH 302

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P E T   ++++C  L  + E +QVH Y +K G ++ + +  AL++ Y+KC SI 
Sbjct: 303 LSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIV 362

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  ++EPD+V WTS+IG Y  +G +++++ ++ +M    + P+ +    VL ACS
Sbjct: 363 DARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACS 422

Query: 477 HGGLVSEG 484
               + +G
Sbjct: 423 SLAALEQG 430



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 199/370 (53%), Gaps = 11/370 (2%)

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           ++ G+ LH+ I+K       +++++LV+LY KC  + +A+ VF+ +  +D+V WN +++ 
Sbjct: 22  LQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80

Query: 238 YALNCLGDGA--IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           Y+ +     +  + +F  MR E    +  TF+ +  +  TL  +  GR  H + IK    
Sbjct: 81  YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSC 140

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            DV V +SL++MY K G   +A +VFD M  +N VSW TM+ G+       EA+ L R M
Sbjct: 141 RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLM 200

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            +     +E    S+LS+     +    +Q+H  A+KNG+ + +S+ NAL+  Y+KCGS+
Sbjct: 201 RREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSL 260

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             ALQ F +  + + +TW+++I  YA  G S +++++F  M    +RP    F+ V++AC
Sbjct: 261 DDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINAC 320

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGRVGLLVEA---YDLLASMPIE 530
           S  G   EG +  + ++    +  +S+ Y  T L D+  +   +V+A   +D L    I 
Sbjct: 321 SDLGAAWEGKQVHDYLLK---LGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIV 377

Query: 531 PRSDTLGAFI 540
             +  +G ++
Sbjct: 378 LWTSMIGGYV 387



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 10/216 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  LK  +    L+QGKQ+H+  +K G   ++ + + +  +Y KC    D   +F  M  
Sbjct: 415 ASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA 474

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R++++WN +ISG+    CG      F  M L+  + D++TF ++L AC     +E G   
Sbjct: 475 RDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGY 534

Query: 185 HSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRD--LVLWNVMV-SCYA 239
              +    FG++  V   + +VD+  + G +++A   F E    D  + LW +++ +C  
Sbjct: 535 FRMMFD-EFGMDPRVEHYACMVDILSRAGKLKEAIE-FTESATIDHGMCLWRIILGACRN 592

Query: 240 LNCLGDGAIAVFNLMRLEGMKGD-YFTFSSLVNSCG 274
                 GA A   LM L   +   Y   SS+ ++ G
Sbjct: 593 YRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALG 628


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 316/554 (57%), Gaps = 3/554 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           +F  + + +Q+HSH++KLG  + L + N +L  Y K ++     +LF+++  R+ VT+N 
Sbjct: 210 EFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNA 269

Query: 135 LISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           L++G    G N      F +M     R    TF ++L A +Q DDIE G+++H F++K  
Sbjct: 270 LLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCN 329

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  N FV++AL+D Y K   V +A ++F E+   D + +NV+V+CYA N     ++ +F 
Sbjct: 330 FVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFK 389

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            ++  G     F F++L++      +  +GRQIH   I      ++LV  SLVDMYAK G
Sbjct: 390 ELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCG 449

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
              +A R+F  +  ++ V W  M+  + Q G   + +KL  +M +     D  T ASI+ 
Sbjct: 450 EFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVR 509

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C SL+     +Q+H++ I +G  + +   +AL++ Y+KCGSI  ALQ F  +   + V+
Sbjct: 510 ACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVS 569

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I AYA +G    ++ +FE+M+   ++PDS++ L +L ACSH GLV EGL+YF+ M 
Sbjct: 570 WNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMT 629

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             Y ++P  EHY    D+L R G   EA  L+A MP EP      + + +C +H +  LA
Sbjct: 630 RIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELA 689

Query: 553 KWAAEKLLELEPSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
           K AA +L  ++  +    Y  +SN+YA+   W +V +++K MR+    KVP  SW+EI  
Sbjct: 690 KKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKH 749

Query: 612 EIHTFVSSDRSHPQ 625
           + H F ++D++HPQ
Sbjct: 750 KTHVFTANDKTHPQ 763



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 229/449 (51%), Gaps = 6/449 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVR 159
           N ++  Y+K     +   LFD M  R  VTW  LI G    N        F  M    + 
Sbjct: 136 NTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGID 195

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            DH++  +LL    + D +   R++HS ++K+G+     VS++L+D Y K   +  A ++
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+++  RD V +N +++ Y+       AI +F  M+  G +   FTF++++ +   L   
Sbjct: 256 FNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDI 315

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           + G+Q+HG V+K +F  +V VA +L+D Y+K+  + +A ++F  M   + +S+N +V  +
Sbjct: 316 EFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCY 375

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAF 398
             NG  +E+++L +++    F       A++L S  ++S++ +  RQ+H+  I     + 
Sbjct: 376 AWNGRVKESLELFKELQFTGFDRRNFPFATLL-SIAAISLNLDIGRQIHSQTIVTDAISE 434

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + N+L++ Y+KCG    A + F  +     V WT++I +Y   GL ++ +++F +M  
Sbjct: 435 ILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQR 494

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             +  D+  +  ++ AC+    ++ G +  + +I   +I  +    + L D+  + G + 
Sbjct: 495 AKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYI-SNVFSGSALVDMYAKCGSIK 553

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +A  +   MP+   S +  A I A   +G
Sbjct: 554 DALQMFQEMPVR-NSVSWNALISAYAQNG 581



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 160/308 (51%), Gaps = 4/308 (1%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           N L+++ +Q  D+   R+L   +       N F ++ ++  Y K G + +AR +FD +  
Sbjct: 105 NFLVKSFLQRGDLNGARKLFDEMPHK----NIFSTNTMIMGYIKSGNLSEARTLFDSMFQ 160

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R  V W +++  YA N     A  +F  M   G+  D+ + ++L++      S    RQ+
Sbjct: 161 RTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQV 220

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  VIK  +D  ++V+ SL+D Y K  ++  A ++F+ +  ++ V++N ++ G+ + G  
Sbjct: 221 HSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFN 280

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           REA+ L   M +  + P E T A+IL++   L      +QVH + +K      + + NAL
Sbjct: 281 REAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANAL 340

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ YSK   +  A + F  + E D +++  ++  YA++G  KES+E+F+++        +
Sbjct: 341 LDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRN 400

Query: 466 IAFLEVLS 473
             F  +LS
Sbjct: 401 FPFATLLS 408



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 98/178 (55%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           ++    +++  Y K+GN+ +A  +FD M  +  V+W  ++ G+ QN   REA  L  +M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    PD V+LA++LS         E RQVH++ IK G  + L + N+L+++Y K  S+ 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
            A Q F  + E D VT+ +++  Y+  G ++E+I +F KM     RP    F  +L+A
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 311/558 (55%), Gaps = 3/558 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+++H  ++K GL   + + N ++ +Y K    +  E +F EM VR++V+WN++ISG
Sbjct: 142 LAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISG 201

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G        FR M    ++LD  +   +L AC     +  G+ +H  +++    L+
Sbjct: 202 YVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELD 261

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++LVD+Y KCG ++ A R+FD++  + +V WN M+  Y+LN     + A    M+ 
Sbjct: 262 VMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQE 321

Query: 257 EG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            G +  D+ T  +L+  C  L +  LG+ +HG  I+  F   +++ T+LVDMY + G + 
Sbjct: 322 GGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLK 381

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  +F  M  +N++SWN M+  + +NG+ R+A+ L +D+   +  PD  T+ASIL +  
Sbjct: 382 PAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYA 441

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L+   E  Q+H Y  K  + +   + N+++  Y KCG++  A + F  +   D+++W +
Sbjct: 442 ELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNT 501

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I AYA HG  + SIE+F +M      P+   F+ +L +CS  GLV+EG  YFN M  DY
Sbjct: 502 VIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDY 561

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
           +I P  EHY C+ DL+GR G L  A + +  MP+ P +   G+ + A +  G + LA+ A
Sbjct: 562 NINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIA 621

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           AE +L LE      Y L+SN+YA    W DV R++  M+     K  GCS ++++ +   
Sbjct: 622 AEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFR 681

Query: 616 FVSSDRSHPQAVHMYAML 633
           FV+ DRS  +   +Y +L
Sbjct: 682 FVNQDRSDNEINMVYDVL 699



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 219/384 (57%), Gaps = 8/384 (2%)

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRM 153
           N +SL  + L  YV+     +   LF+ MR  +   WN +I G ++ G   +   ++ RM
Sbjct: 59  NSVSL-TRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRM 117

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
               VR D+ T+  +++AC    D+  G R+H  ++K G  L+ ++ ++L+ +Y K G +
Sbjct: 118 EFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCI 177

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG--AIAVFNLMRLEGMKGDYFTFSSLVN 271
           E A  VF E+  RDLV WN M+S Y    +GDG  +++ F  M+  G+K D F+   ++ 
Sbjct: 178 ESAEMVFREMPVRDLVSWNSMISGYV--SVGDGWRSLSCFREMQASGIKLDRFSVIGILG 235

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C   G  + G++IH  +++   +LDV+V TSLVDMYAK G +D A R+FD +T K++V+
Sbjct: 236 ACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVA 295

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           WN M+ G+  N    E+   +R M + G   PD +T+ ++L  C  L      + VH +A
Sbjct: 296 WNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFA 355

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           I+NG    L +E AL++ Y +CG +  A   FG + E +L++W ++I +Y  +G +++++
Sbjct: 356 IRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAM 415

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSA 474
            +F+ + +  ++PD+     +L A
Sbjct: 416 TLFQDLCNKTLKPDATTIASILPA 439



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 162/322 (50%), Gaps = 2/322 (0%)

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           Y + G++++A  +F+ +   D  +WNVM+  +  N L   A+  ++ M   G++GD FT+
Sbjct: 70  YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTY 129

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
             ++ +CG L     G ++HG VIK   DLD+ +  SL+ MYAK G I+ A  VF  M  
Sbjct: 130 PFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPV 189

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +++VSWN+M+ G+   GDG  ++   R+M       D  ++  IL +C         +++
Sbjct: 190 RDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEI 249

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H   +++ ++  + ++ +L++ Y+KCG +  A + F  + +  +V W ++IG Y+ +  S
Sbjct: 250 HCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQS 309

Query: 447 KESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            ES     KM     + PD I  + +L  C+    +  G       I +   LP     T
Sbjct: 310 FESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRN-GFLPHLVLET 368

Query: 506 CLTDLLGRVGLLVEAYDLLASM 527
            L D+ G  G L  A  L   M
Sbjct: 369 ALVDMYGECGKLKPAECLFGQM 390



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 2/195 (1%)

Query: 292 QSF--DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           QSF  + + +  T  +  Y + G + +A  +F+ M   +   WN M+ GF  NG   +AV
Sbjct: 52  QSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAV 111

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
                M  G    D  T   ++ +CG L    E  +VH   IK+G+   + I N+LI  Y
Sbjct: 112 DFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMY 171

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           +K G I  A   F  +   DLV+W S+I  Y   G    S+  F +M +  ++ D  + +
Sbjct: 172 AKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVI 231

Query: 470 EVLSACSHGGLVSEG 484
            +L ACS  G +  G
Sbjct: 232 GILGACSLEGFLRNG 246



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 396 QAFLSIENAL-----INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           Q+FL   N++     +++Y + G +  AL  F ++++ D   W  +I  +  +GL  +++
Sbjct: 52  QSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAV 111

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGL--VSEGLRYFNLMISDYHILPDSEHYTCLT 508
           + + +M    VR D+  +  V+ AC  GGL  ++EG R    +I     L D      L 
Sbjct: 112 DFYHRMEFGGVRGDNFTYPFVIKAC--GGLYDLAEGERVHGKVIKSGLDL-DIYIGNSLI 168

Query: 509 DLLGRVGLLVEAYDLLASMPIE 530
            +  ++G +  A  +   MP+ 
Sbjct: 169 IMYAKIGCIESAEMVFREMPVR 190


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 205/643 (31%), Positives = 341/643 (53%), Gaps = 21/643 (3%)

Query: 1   MLSRCPAPPIFTVHF-----KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTI 55
           M  RC AP      F     + P+S+ +          + N +  D   L S +  SGT 
Sbjct: 95  MYGRCAAPDSARQVFDEMPARNPVSWASVI-----AAHVQNGRAGDALGLFSSMLRSGT- 148

Query: 56  HESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
                +A  F    A++   + G +  G+Q+H+H +K    + L +QN ++ +Y K    
Sbjct: 149 -----AADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 203

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR-LDHITFNSLLRA 171
           DD   LF+ ++ +++++W ++I+G    G  +     FR M+++     +   F S  RA
Sbjct: 204 DDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRA 263

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C      E G ++H   +K     + +V  +L D+Y +C  ++ AR  F  +   DLV W
Sbjct: 264 CGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSW 323

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +V+ Y++  L   A+ +F+ MR  G++ D  T   L+ +C    +   GR IH  ++K
Sbjct: 324 NSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK 383

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
              D DV V  SL+ MYA+  ++  A  VF  +  ++VV+WN+++    Q+    E +KL
Sbjct: 384 LGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKL 443

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              + +     D ++L ++LS+   L      +QVHAYA K G+     + N LI+ Y+K
Sbjct: 444 FSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAK 503

Query: 412 CGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           CGS+  A++ F  +    D+ +W+S+I  YA  G +KE+ ++F +M S  +RP+ + F+ 
Sbjct: 504 CGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIG 563

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL+ACS  G V+EG  Y+++M  +Y I+P  EH +C+ DLL R G L EA + +  MP E
Sbjct: 564 VLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFE 623

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P        + A K+H  + + K AAE +L ++PS    Y L+ N+YA+   W + ARL+
Sbjct: 624 PDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLK 683

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K MR +   K PG SW+++ GE+  F+  DRSHP++  +YAML
Sbjct: 684 KAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 726



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 147/479 (30%), Positives = 237/479 (49%), Gaps = 25/479 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIM-------KLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           Y+  +   ++   L QG+++H H++          L     L N ++ +Y +C A D   
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           ++FDEM  RN V+W ++I+  +  G  G+    F  ML      D     S +RAC +  
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D+  GR++H+  LK   G +  V +ALV +Y K G V+D   +F+ +  +DL+ W  +++
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 237 CYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
            +A       A+ VF  M +EG    + F F S   +CG +GS + G QIHGL IK   D
Sbjct: 227 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D+ V  SL DMYA+  N+D A   F  + A ++VSWN++V  +   G   EA+ L  +M
Sbjct: 287 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 PD +T+  +L +C         R +H+Y +K G+   +S+ N+L++ Y++C  +
Sbjct: 347 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 406

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           + A+  F  +K+ D+VTW SI+ A A H   +E +++F  +       D I+   VLSA 
Sbjct: 407 SSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSA- 465

Query: 476 SHGGLVSEGLRYFNLMISDYH-------ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
                 S  L YF  M+   H       ++ D      L D   + G L +A  L   M
Sbjct: 466 ------SAELGYFE-MVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 308/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   +  G L++GKQLHS+++K G+     ++  +L +YVK    ++  ++FD     N+
Sbjct: 251 LAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNV 310

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G I+        F RML   VR +  T+  +LR C    +I +G ++HS 
Sbjct: 311 VLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSL 370

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K GF  + +VS  L+D+Y K G+++ A+R+ D +  +D+V W  M++ Y  +     A
Sbjct: 371 TIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEA 430

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +  F  M+  G+  D    +S +++C  + +   G QIH  V    +  DV +   LV +
Sbjct: 431 LETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYL 490

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G   +A   F+ +  K  ++WN ++ GF Q+G   EA+K+   M Q     +  T 
Sbjct: 491 YARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTF 550

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  +L+   + +Q+HA  IK G  +   I NALI+ Y KCGSI  A   F  + +
Sbjct: 551 VSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTK 610

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W +II   + HG   E++++F++M    ++P  + F+ VL+ACSH GLV EGL Y
Sbjct: 611 RNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCY 670

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M +++ I P  +HY C+ D+LGR G L  A   +  MPI   S      + ACKVH 
Sbjct: 671 FKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHK 730

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ + ++AA+ LLELEP    +Y L+SN YA    W    ++RK+M+D    K PG SWI
Sbjct: 731 NLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWI 790

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F   DR HP A  +Y  L
Sbjct: 791 EVKNVVHAFFVGDRLHPLADQIYNFL 816



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 243/456 (53%), Gaps = 3/456 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K    Q G+ +H  + K G  ++  + N ++ +Y++C++F   +++F +M  
Sbjct: 147 SSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLY 206

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + VT+NTLISG   C  G      F  M L  +  D +T  SLL AC    D+  G++L
Sbjct: 207 CDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS++LK G  L+  +  +L+DLY K G +E+A ++FD     ++VLWN+M+  Y      
Sbjct: 267 HSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDL 326

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             +  +F  M   G++ + FT+  ++ +C   G   LG QIH L IK  F  D+ V+  L
Sbjct: 327 AKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVL 386

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K G +D A R+ D +  K+VVSW +M+ G+ Q+   +EA++  ++M      PD 
Sbjct: 387 IDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDN 446

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           + LAS +S+C  +    +  Q+HA    +G  A +SI N L+  Y++CG    A   F +
Sbjct: 447 IGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEA 506

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++  + +TW  +I  +A  GL +E+++VF KM     + +   F+  +SA ++   + +G
Sbjct: 507 IEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQG 566

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            +    +I   +   ++E    L  L G+ G + +A
Sbjct: 567 KQIHARVIKTGYT-SETEISNALISLYGKCGSIEDA 601



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/441 (30%), Positives = 232/441 (52%), Gaps = 5/441 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN-- 141
           ++H+  +  GL     + N ++ +Y K        ++F+E+ VR+ V+W  ++SG     
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            G      +R M    V       +S+L AC + +  ++GR +H  + K GF    FV +
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+ LY +C     A RVF ++L  D V +N ++S +A    GD A+ +F+ M+L G+  
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T +SL+ +C  +G  + G+Q+H  ++K    LD ++  SL+D+Y K+G+I++A ++F
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF 302

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D     NVV WN M+V +GQ  D  ++  +   ML     P++ T   +L +C       
Sbjct: 303 DSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+  IKNG Q+ + +   LI+ YSK G +  A +    ++E D+V+WTS+I  Y 
Sbjct: 363 LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYV 422

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   KE++E F++M +  + PD+I     +SAC+    V +G + +  + +S Y    D
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYS--AD 480

Query: 501 SEHYTCLTDLLGRVGLLVEAY 521
              +  L  L  R G+  EA+
Sbjct: 481 VSIWNGLVYLYARCGISKEAF 501



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 204/409 (49%), Gaps = 14/409 (3%)

Query: 124 MRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  R   ++N  ++G +  +    + P F       + L  + F   LRAC  +     G
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGS-----G 55

Query: 182 RR------LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
           RR      +H+  +  G      + + L+DLY K GFV  ARRVF+E+  RD V W  ++
Sbjct: 56  RRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVL 115

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S YA N LG+ A+ ++  M   G+    +  SS++++C      +LGR IH  V KQ F 
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFF 175

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            +  V  +L+ +Y +  +   A RVF  M   + V++NT++ G  Q G G  A+ +  +M
Sbjct: 176 SETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEM 235

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 PD VT+AS+L++C ++    + +Q+H+Y +K G+     +E +L++ Y K G I
Sbjct: 236 QLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDI 295

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             ALQ F S    ++V W  ++ AY       +S ++F +ML+  VRP+   +  +L  C
Sbjct: 296 EEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTC 355

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           +H G +  G +  +L I +     D      L D+  + G L +A  +L
Sbjct: 356 THTGEIGLGEQIHSLTIKN-GFQSDMYVSGVLIDMYSKYGWLDKAQRIL 403



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 164/317 (51%), Gaps = 4/317 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+     G +  G+Q+HS  +K G  + + +   ++ +Y K    D  +++ D + 
Sbjct: 348 YPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIE 407

Query: 126 VRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            +++V+W ++I+G +    C       F+ M    +  D+I   S + AC     +  G 
Sbjct: 408 EKDVVSWTSMIAGYVQHEFC-KEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGS 466

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H+ +   G+  +  + + LV LY +CG  ++A   F+ +  ++ + WN ++S +A + 
Sbjct: 467 QIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSG 526

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L + A+ VF  M   G K + FTF S +++   L   K G+QIH  VIK  +  +  ++ 
Sbjct: 527 LYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISN 586

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+ +Y K G+I+DA   F  MT +N VSWNT++    Q+G G EA+ L   M Q    P
Sbjct: 587 ALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKP 646

Query: 363 DEVTLASILSSCGSLSI 379
            +VT   +L++C  + +
Sbjct: 647 SDVTFVGVLTACSHVGL 663



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 5/197 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  ++  SA    ++QGKQ+H+ ++K G  ++  + N ++ +Y KC + +D +  F EM 
Sbjct: 550 FVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMT 609

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR- 182
            RN V+WNT+I+     G  +     F +M    ++   +TF  +L AC     +E G  
Sbjct: 610 KRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLC 669

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYAL 240
              S   + G        + +VD+ G+ G ++ A+R  +E+ +  D ++W  ++S C   
Sbjct: 670 YFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVH 729

Query: 241 NCLGDGAIAVFNLMRLE 257
             L  G  A  +L+ LE
Sbjct: 730 KNLEIGEFAAKHLLELE 746


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 300/527 (56%), Gaps = 24/527 (4%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           +LFD++  R++++WN++ISG ++ G        +++M+   + +D  T  S+L  C  + 
Sbjct: 206 ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            + +G+ +HS  +K  F      S+ L+D+Y KCG ++ A RVF+++  R++V W  M++
Sbjct: 266 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 325

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y  +   DGAI +   M  EG+K D    +S++++C   GS   G+ +H  +   + + 
Sbjct: 326 GYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMES 385

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           ++ V  +L+DMYAK G+++ A  VF  M  K+++SWNTM+                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------------- 425

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            G   PD  T+A +L +C SLS     +++H Y ++NG  +   + NAL++ Y KCG + 
Sbjct: 426 -GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  +   DLV+WT +I  Y  HG   E+I  F +M    + PD ++F+ +L ACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GL+ +G R+F +M +D++I P  EHY C+ DLL R G L +AY+ + ++PI P +   
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIW 604

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +  C+ +  I LA+  AE++ ELEP     Y L++N+YA    W +V RLR+ +   
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQ 664

Query: 597 CDHKVPGCSWIEIAGEIHTFVS-SDRSHPQAVHMYAMLCTVFGLMEE 642
              K PGCSWIEI G+++ FVS ++ SHP + ++ ++L  +   M+E
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKE 711



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 207/408 (50%), Gaps = 35/408 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L  GK +HS  +K     +++  N +L +Y KC   D   ++F++M  RN+V+W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++I+G    G         ++M  + V+LD +   S+L AC ++  ++ G+ +H +I   
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               N FV +AL+D+Y KCG +E A  VF  ++ +D++ WN M+                
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG--------------- 426

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
                  +K D  T + ++ +C +L + + G++IHG +++  +  D  VA +LVD+Y K 
Sbjct: 427 ------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +  A  +FD + +K++VSW  M+ G+G +G G EA+    +M      PDEV+  SIL
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EP 428
            +C S S   E      Y +KN       +E+   +++  S+ G+++ A +   ++   P
Sbjct: 541 YAC-SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAP 599

Query: 429 DLVTWTSII-GAYAFHGLSKESIEVFEKMLSHA--VRPDSIAFLEVLS 473
           D   W +++ G   +H      IE+ EK+      + P++  +  +L+
Sbjct: 600 DATIWGALLCGCRNYH-----DIELAEKVAERVFELEPENTGYYVLLA 642



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 188/426 (44%), Gaps = 83/426 (19%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            L+  T+ S+L+ C        G+++HS I     G++  +   LV  Y  CG +++ RR
Sbjct: 96  ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRR 155

Query: 219 VFD------------------------EVLC---------------------------RD 227
           VFD                        E +C                           RD
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           ++ WN M+S Y  N L +  + ++  M   G+  D  T  S++  C   G+  LG+ +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           L IK SF+  +  + +L+DMY+K G++D A RVF+ M  +NVVSW +M+ G+ ++G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+KLL+ M +     D V + SIL +C         + VH Y   N +++ L + NAL++
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y+KCGS+  A   F ++   D+++W ++IG                      ++PDS  
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRT 434

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMI-----SDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
              VL AC+    +  G      ++     SD H+         L DL  + G+L  A  
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVA------NALVDLYVKCGVLGLARL 488

Query: 523 LLASMP 528
           L   +P
Sbjct: 489 LFDMIP 494



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 141/272 (51%), Gaps = 23/272 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK +H +I    + + L + N ++ +Y KC + +    +F  M V++I
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           ++WNT+I       G + P            D  T   +L AC     +E G+ +H +IL
Sbjct: 419 ISWNTMI-------GELKP------------DSRTMACVLPACASLSALERGKEIHGYIL 459

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           + G+  +  V++ALVDLY KCG +  AR +FD +  +DLV W VM++ Y ++  G+ AIA
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDM 307
            FN MR  G++ D  +F S++ +C   G  + G +    ++K  F+++  +     +VD+
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDL 578

Query: 308 YAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
            ++ GN+  A    + +  A +   W  ++ G
Sbjct: 579 LSRTGNLSKAYEFMETLPIAPDATIWGALLCG 610


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 320/571 (56%), Gaps = 6/571 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMK-LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           ALK   +   +  G+ +H  + K + L + L + + ++++Y+KC    +  ++FDE+   
Sbjct: 66  ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125

Query: 128 NIVTWNTLISGIINCGG--NVTPYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +IVTW++++SG    G       +FRRM++  +V  D +T  +L+ AC +  +  +GR +
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H F+++ GF  +  + ++L++ Y K    ++A  +F  +  +D++ W+ +++CY  N   
Sbjct: 186 HGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAA 245

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ VFN M  +G + +  T   ++ +C      + GR+ H L I++  + +V V+T+L
Sbjct: 246 AEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTAL 305

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPD 363
           VDMY K  + ++A  VF  +  K+VVSW  ++ GF  NG    +++    ML + +  PD
Sbjct: 306 VDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPD 365

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + +  +L SC  L    + +  H+Y IK G  +   I  +L+  YS+CGS+  A + F 
Sbjct: 366 AILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN 425

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVS 482
            +   D V WTS+I  Y  HG   +++E F  M+ S  V+P+ + FL +LSACSH GL+ 
Sbjct: 426 GIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIH 485

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGLR F LM++DY + P+ EHY  L DLLGRVG L  A ++   MP  P    LG  +GA
Sbjct: 486 EGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGA 545

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H +  +A+  A+KL ELE +    Y L+SNVY  +  W +V +LR  ++     K  
Sbjct: 546 CRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGL 605

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             S IEI  ++H FV+ D  HP+   +Y +L
Sbjct: 606 AESLIEIRRKVHRFVADDELHPEKEPVYGLL 636



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 231/447 (51%), Gaps = 14/447 (3%)

Query: 111 CKAFD---DMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITF 165
           C+ F    D  ++F EM  R++  WNTL+  +        V  +F  M  D  + D+ T 
Sbjct: 4   CRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTL 63

Query: 166 NSLLRACVQADDIEVGRRLHSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
              L+AC +  ++  G  +H F+ K V  G + +V S+L+ +Y KCG + +A R+FDE+ 
Sbjct: 64  PVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 123

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGR 283
             D+V W+ MVS +  N     A+  F  M +   +  D  T  +LV++C  L +S+LGR
Sbjct: 124 KPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGR 183

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            +HG VI++ F  D+ +  SL++ YAK+    +A  +F  +  K+V+SW+T++  + QNG
Sbjct: 184 CVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNG 243

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+ +  DM+     P+  T+  +L +C +     + R+ H  AI+ G++  + +  
Sbjct: 244 AAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVST 303

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVR 462
           AL++ Y KC S   A   F  +   D+V+W ++I  +  +G++  SIE F  M L +  R
Sbjct: 304 ALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTR 363

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD+I  ++VL +CS  G + +  + F+  +  Y    +      L +L  R G L  A  
Sbjct: 364 PDAILMVKVLGSCSELGFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASK 422

Query: 523 LLASMPIEPRSDTL--GAFIGACKVHG 547
           +   + ++   DT+   + I    +HG
Sbjct: 423 VFNGIALK---DTVVWTSLITGYGIHG 446


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 300/527 (56%), Gaps = 24/527 (4%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           +LFD++  R++++WN++ISG ++ G        +++M+   + +D  T  S+L  C  + 
Sbjct: 206 ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            + +G+ +HS  +K  F      S+ L+D+Y KCG ++ A RVF+++  R++V W  M++
Sbjct: 266 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 325

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y  +   DGAI +   M  EG+K D    +S++++C   GS   G+ +H  +   + + 
Sbjct: 326 GYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMES 385

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           ++ V  +L+DMYAK G+++ A  VF  M  K+++SWNTM+                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------------- 425

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            G   PD  T+A +L +C SLS     +++H Y ++NG  +   + NAL++ Y KCG + 
Sbjct: 426 -GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  +   DLV+WT +I  Y  HG   E+I  F +M    + PD ++F+ +L ACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GL+ +G R+F +M +D++I P  EHY C+ DLL R G L +AY+ + ++PI P +   
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +  C+ +  I LA+  AE++ ELEP     Y L++N+YA    W +V RLR+ +   
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQ 664

Query: 597 CDHKVPGCSWIEIAGEIHTFVS-SDRSHPQAVHMYAMLCTVFGLMEE 642
              K PGCSWIEI G+++ FVS ++ SHP + ++ ++L  +   M+E
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKE 711



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 207/408 (50%), Gaps = 35/408 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L  GK +HS  +K     +++  N +L +Y KC   D   ++F++M  RN+V+W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++I+G    G         ++M  + V+LD +   S+L AC ++  ++ G+ +H +I   
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               N FV +AL+D+Y KCG +E A  VF  ++ +D++ WN M+                
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG--------------- 426

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
                  +K D  T + ++ +C +L + + G++IHG +++  +  D  VA +LVD+Y K 
Sbjct: 427 ------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +  A  +FD + +K++VSW  M+ G+G +G G EA+    +M      PDEV+  SIL
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EP 428
            +C S S   E      Y +KN       +E+   +++  S+ G+++ A +   ++   P
Sbjct: 541 YAC-SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAP 599

Query: 429 DLVTWTSII-GAYAFHGLSKESIEVFEKMLSHA--VRPDSIAFLEVLS 473
           D   W +++ G   +H      IE+ EK+      + P++  +  +L+
Sbjct: 600 DATIWGALLCGCRNYH-----DIELAEKVAERVFELEPENSGYYVLLA 642



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 189/426 (44%), Gaps = 83/426 (19%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
            L+  T++S+L+ C        G+++HS I     G++  +   LV  Y  CG +++ RR
Sbjct: 96  ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 219 VFD------------------------EVLC---------------------------RD 227
           VFD                        E +C                           RD
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           ++ WN M+S Y  N L +  + ++  M   G+  D  T  S++  C   G+  LG+ +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           L IK SF+  +  + +L+DMY+K G++D A RVF+ M  +NVVSW +M+ G+ ++G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+KLL+ M +     D V + SIL +C         + VH Y   N +++ L + NAL++
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y+KCGS+  A   F ++   D+++W ++IG                      ++PDS  
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRT 434

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMI-----SDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
              VL AC+    +  G      ++     SD H+         L DL  + G+L  A  
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVA------NALVDLYVKCGVLGLARL 488

Query: 523 LLASMP 528
           L   +P
Sbjct: 489 LFDMIP 494



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 141/272 (51%), Gaps = 23/272 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK +H +I    + + L + N ++ +Y KC + +    +F  M V++I
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           ++WNT+I       G + P            D  T   +L AC     +E G+ +H +IL
Sbjct: 419 ISWNTMI-------GELKP------------DSRTMACVLPACASLSALERGKEIHGYIL 459

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           + G+  +  V++ALVDLY KCG +  AR +FD +  +DLV W VM++ Y ++  G+ AIA
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDM 307
            FN MR  G++ D  +F S++ +C   G  + G +    ++K  F+++  +     +VD+
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDL 578

Query: 308 YAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
            ++ GN+  A    + +  A +   W  ++ G
Sbjct: 579 LSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 320/571 (56%), Gaps = 6/571 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMK-LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           ALK   +   +  G+ +H  + K + L + L + + ++++Y+KC    +  ++FDE+   
Sbjct: 47  ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 106

Query: 128 NIVTWNTLISGIINCGG--NVTPYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +IVTW++++SG    G       +FRRM++  +V  D +T  +L+ AC +  +  +GR +
Sbjct: 107 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 166

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H F+++ GF  +  + ++L++ Y K    ++A  +F  +  +D++ W+ +++CY  N   
Sbjct: 167 HGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAA 226

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ VFN M  +G + +  T   ++ +C      + GR+ H L I++  + +V V+T+L
Sbjct: 227 AEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTAL 286

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPD 363
           VDMY K  + ++A  VF  +  K+VVSW  ++ GF  NG    +++    ML + +  PD
Sbjct: 287 VDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPD 346

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + +  +L SC  L    + +  H+Y IK G  +   I  +L+  YS+CGS+  A + F 
Sbjct: 347 AILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN 406

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVS 482
            +   D V WTS+I  Y  HG   +++E F  M+ S  V+P+ + FL +LSACSH GL+ 
Sbjct: 407 GIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIH 466

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGLR F LM++DY + P+ EHY  L DLLGRVG L  A ++   MP  P    LG  +GA
Sbjct: 467 EGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGA 526

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H +  +A+  A+KL ELE +    Y L+SNVY  +  W +V +LR  ++     K  
Sbjct: 527 CRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGL 586

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             S IEI  ++H FV+ D  HP+   +Y +L
Sbjct: 587 AESLIEIRRKVHRFVADDELHPEKEPVYGLL 617



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 223/431 (51%), Gaps = 11/431 (2%)

Query: 124 MRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  R++  WNTL+  +        V  +F  M  D  + D+ T    L+AC +  ++  G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 182 RRLHSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
             +H F+ K V  G + +V S+L+ +Y KCG + +A R+FDE+   D+V W+ MVS +  
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 241 NCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           N     A+  F  M +   +  D  T  +LV++C  L +S+LGR +HG VI++ F  D+ 
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLS 180

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  SL++ YAK+    +A  +F  +  K+V+SW+T++  + QNG   EA+ +  DM+   
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDG 240

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+  T+  +L +C +     + R+ H  AI+ G++  + +  AL++ Y KC S   A 
Sbjct: 241 TEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAY 300

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSIAFLEVLSACSHG 478
             F  +   D+V+W ++I  +  +G++  SIE F  M L +  RPD+I  ++VL +CS  
Sbjct: 301 AVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSEL 360

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL-- 536
           G + +  + F+  +  Y    +      L +L  R G L  A  +   + ++   DT+  
Sbjct: 361 GFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK---DTVVW 416

Query: 537 GAFIGACKVHG 547
            + I    +HG
Sbjct: 417 TSLITGYGIHG 427


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 306/549 (55%), Gaps = 5/549 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q KQ+H+ ++ LGL     L  +++H            ++FD++    I  WN +I G  
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             N   +    +  M L  V  D  TF  LL+AC     +++GR +H+ + ++GF  + F
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
           V + L+ LY KC  +  AR VF+ +    R +V W  +VS YA N     A+ +F+ MR 
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +K D+    S++N+   L   K GR IH  V+K   +++  +  SL  MYAK G +  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +FD M + N++ WN M+ G+ +NG  REA+ +  +M+     PD +++ S +S+C  
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +    + R ++ Y  ++  +  + I +ALI+ ++KCGS+ GA   F    + D+V W+++
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  Y  HG ++E+I ++  M    V P+ + FL +L AC+H G+V EG  +FN M +D+ 
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHK 454

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  +HY C+ DLLGR G L +AY+++  MP++P     GA + ACK H  + L ++AA
Sbjct: 455 INPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAA 514

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           ++L  ++PS   +Y  +SN+YA+ R W  VA +R  M++   +K  GCSW+E+ G +  F
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAF 574

Query: 617 VSSDRSHPQ 625
              D+SHP+
Sbjct: 575 RVGDKSHPR 583


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 304/552 (55%), Gaps = 3/552 (0%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G ++ G  +H    KLG+  ++++ N ++ +Y KC    +   LFD    +N+V+WN
Sbjct: 310 AAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWN 369

Query: 134 TLISGIINCGG--NVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           T+I G    G    V    + M  +  VR++ +T  ++L AC     +   + +H +  +
Sbjct: 370 TIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFR 429

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            GF  +  V++A V  Y KC  ++ A RVF  +  + +  WN ++  +A N     ++ +
Sbjct: 430 HGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDL 489

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F +M   GM  D FT  SL+ +C  L   + G++IHG +++   +LD  +  SL+ +Y +
Sbjct: 490 FLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQ 549

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
             ++     +FD M  K++V WN M+ GF QN    EA+   R ML G   P E+ +  +
Sbjct: 550 CSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGV 609

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L +C  +S     ++VH++A+K  +     +  ALI+ Y+KCG +  +   F  V E D 
Sbjct: 610 LGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDE 669

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
             W  II  Y  HG   ++IE+FE M +   RPDS  FL VL AC+H GLV+EGL+Y   
Sbjct: 670 AVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQ 729

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M + Y + P  EHY C+ D+LGR G L EA  L+  MP EP S    + + +C+ +G + 
Sbjct: 730 MQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLE 789

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           + +  ++KLLELEP+K  NY L+SN+YA    W +V ++R+ M++N  HK  GCSWIEI 
Sbjct: 790 IGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIG 849

Query: 611 GEIHTFVSSDRS 622
           G ++ F+ SD S
Sbjct: 850 GMVYRFLVSDGS 861



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/403 (30%), Positives = 216/403 (53%), Gaps = 8/403 (1%)

Query: 82  GKQLHSHI-MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G+++H+ +     L N + L  +++ +Y  C +  D   +FD  + +++  +N L+SG  
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYS 170

Query: 141 NCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                   ++ +   +   ++  D+ T   + +AC    D+E+G  +H+  LK G   + 
Sbjct: 171 RNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDA 230

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN-VMVSCYALNCLGD--GAIAVFNLM 254
           FV +AL+ +YGKCGFVE A +VF+ +  R+LV WN VM +C      G+  G      + 
Sbjct: 231 FVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLIS 290

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             EG+  D  T  +++ +C  +G  ++G  +HGL  K     +V V  SLVDMY+K G +
Sbjct: 291 EEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYL 350

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTLASILSS 373
            +A  +FD    KNVVSWNT++ G+ + GD R   +LL++M  +     +EVT+ ++L +
Sbjct: 351 GEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPA 410

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C         +++H YA ++G      + NA + AY+KC S+  A + F  ++   + +W
Sbjct: 411 CSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSW 470

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            ++IGA+A +G   +S+++F  M+   + PD      +L AC+
Sbjct: 471 NALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACA 513


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 314/548 (57%), Gaps = 8/548 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ALK   +   L  GK++H  ++K+   + + L   +L +Y KC       K+F+++ 
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTG-LLDMYAKCGEIKSAHKVFNDIT 203

Query: 126 VRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           +RN+V W ++I+G +    C   +   F RM  +NV  +  T+ +L+ AC +   +  G+
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLV-LFNRMRENNVLGNEYTYGTLIMACTKLSALHQGK 262

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
             H  ++K G  L+  + ++L+D+Y KCG + +ARRVF+E    DLV+W  M+  Y  N 
Sbjct: 263 WFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNG 322

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+++F  M+   +K +  T +S+++ CG + + +LGR +HGL IK     D  VA 
Sbjct: 323 SVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVAN 381

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LV MYAK     DA  VF+  + K++V+WN+++ GF QNG   EA+ L   M   S  P
Sbjct: 382 ALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTP 441

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE--NALINAYSKCGSIAGALQ 420
           + VT+AS+ S+C SL        +HAY++K G  A  S+    AL++ Y+KCG    A  
Sbjct: 442 NGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARL 501

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F +++E + +TW+++IG Y   G +  S+E+FE+ML    +P+   F  +LSAC H G+
Sbjct: 502 IFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGM 561

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V+EG +YF+ M  DY+  P ++HYTC+ D+L R G L +A D++  MPI+P     GAF+
Sbjct: 562 VNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFL 621

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
             C +H    L +   +K+L+L P     Y LVSN+YAS+  W     +R +M+     K
Sbjct: 622 HGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSK 681

Query: 601 VPGCSWIE 608
           + G S +E
Sbjct: 682 IAGHSTME 689



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 215/404 (53%), Gaps = 4/404 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--II 140
           +Q H  +   GL   +S+  +++ +Y       D   +FD++   +   W  ++    + 
Sbjct: 61  RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN 120

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                V   +  ++    R D I F+  L+AC +  D++ G+++H  ++KV    +  V 
Sbjct: 121 KESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVL 179

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + L+D+Y KCG ++ A +VF+++  R++V W  M++ Y  N L +  + +FN MR   + 
Sbjct: 180 TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVL 239

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
           G+ +T+ +L+ +C  L +   G+  HG ++K   +L   + TSL+DMY K G+I +A RV
Sbjct: 240 GNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRV 299

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+  +  ++V W  M+VG+  NG   EA+ L + M      P+ VT+AS+LS CG +   
Sbjct: 300 FNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENL 359

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              R VH  +IK G+    ++ NAL++ Y+KC     A   F    E D+V W SII  +
Sbjct: 360 ELGRSVHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGF 418

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + +G   E++ +F +M S +V P+ +    + SAC+  G ++ G
Sbjct: 419 SQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVG 462



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 162/308 (52%), Gaps = 4/308 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL  C   D +   R+ H  +   G   +  +++ LV LYG  G+ +DAR VFD++   D
Sbjct: 50  LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPD 106

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
             LW VM+ CY LN      + +++L+   G + D   FS  + +C  L     G++IH 
Sbjct: 107 FYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHC 166

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            ++K     D +V T L+DMYAK G I  A +VF+ +T +NVV W +M+ G+ +N    E
Sbjct: 167 QLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEE 225

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
            + L   M + +   +E T  +++ +C  LS   + +  H   +K+G++    +  +L++
Sbjct: 226 GLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLD 285

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y KCG I+ A + F      DLV WT++I  Y  +G   E++ +F+KM    ++P+ + 
Sbjct: 286 MYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVT 345

Query: 468 FLEVLSAC 475
              VLS C
Sbjct: 346 IASVLSGC 353



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +LS C ++      RQ H     NG+   +SI   L++ Y   G    A   F  + EPD
Sbjct: 50  LLSKCTNID---SLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPD 106

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
              W  ++  Y  +  S E +++++ ++ H  R D I F + L AC+
Sbjct: 107 FYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACT 153


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 312/556 (56%), Gaps = 4/556 (0%)

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY-- 149
           +G    L L N ++ +Y KC        +FD M  RN+V+W  L+ G I  G  +     
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F +M L  V+ +  TF++ L+AC   + +++GR++H   +K GF +   V ++++D+Y K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG + +A  +F+ +  R+L+ WN M++ Y +    + A+ +F  M+  G   D FTF+S 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSF--DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           + +C  LG+ K G QIH  +I   F   ++  VA +L+D+Y K G +  A RVF  +  K
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           +V+SW  +++G+ Q G+  E+++L R + + S   D   L+S++      ++  + +Q+H
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMH 300

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A+AIK      +S+ N++++ Y KCG I  A + F  +   ++++WT +I  Y  HGL K
Sbjct: 301 AFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGK 360

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           E+I +F++M   +  PD + +L VL  CSH GLV +G  YF+ + S + I    EHY C+
Sbjct: 361 EAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACM 420

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            DLLGR G L EA +L+ SMP+E         + AC+VHG + L K     LL L+   P
Sbjct: 421 VDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENP 480

Query: 568 VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
           VNY ++SN+YA    W +  R+R++++     K  G SW+EI  E+H F   D +HP   
Sbjct: 481 VNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTE 540

Query: 628 HMYAMLCTVFGLMEEN 643
            ++ +L  +   M+E 
Sbjct: 541 KIHEILKEMERRMKEE 556



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 199/385 (51%), Gaps = 6/385 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK       L  G+Q+H   +K G      + N ++ +Y KC   ++   +F+ M 
Sbjct: 76  FSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMP 135

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VRN+++WN +I+G    G        F++M      LD  TF S L+AC     I+ G +
Sbjct: 136 VRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQ 195

Query: 184 LHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           +H+F++  GF   +N  V+ AL+DLY KCG +  ARRVF  +  + ++ W  ++  YA  
Sbjct: 196 IHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQE 255

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                ++ +F  +R   ++ D F  SS++         + G+Q+H   IK    +D+ V 
Sbjct: 256 GNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVC 315

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            S++DMY K G I++A R+F  M A+NV+SW  M+ G+G++G G+EA++L  +M   S  
Sbjct: 316 NSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTE 375

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQ 420
           PD+VT  ++L  C    +  + ++  +     +G++A +     +++   + G +  A  
Sbjct: 376 PDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKN 435

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHG 444
              S+  E ++  W +++ A   HG
Sbjct: 436 LVDSMPLEANVGIWQTLLSACRVHG 460



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 17/236 (7%)

Query: 7   APPIFT-VHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSF 65
           A  +F+ +  K  +S+    L   Q   +  + +  R +  S ++  G I          
Sbjct: 230 ARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFI---------- 279

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
            S  + V A F  +QQGKQ+H+  +K+     +S+ N +L +Y+KC   ++ E+LF EM 
Sbjct: 280 LSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMP 339

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+++W  +I+G      G      F  M LD+   D +T+ ++L  C  +  +E G+ 
Sbjct: 340 ARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQE 399

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS 236
             S +     G+   V   + +VDL G+ G +++A+ + D + L  ++ +W  ++S
Sbjct: 400 YFSRLCSY-HGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLS 454


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 188/582 (32%), Positives = 323/582 (55%), Gaps = 5/582 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+++H+H+++ G  +++ + N ++ +Y KC       K+FD M V + ++WN +I+G 
Sbjct: 214 RMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGH 273

Query: 140 IN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                C   +   F  ML + V+ + +T  S+  A     ++   + +H F +K GF ++
Sbjct: 274 FENHECEAGLE-LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAID 332

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
               ++L+ +Y   G + DA ++F  +  +D + W  M+S Y  N   D A+ V+ LM L
Sbjct: 333 VAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +  D  T +S + +C  LG   +G ++H L   + F   V+VA +L++MYAK+ +ID 
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  K+VVSW++M+ GF  N    EA+   R ML G   P+ VT  + LS+C +
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAA 511

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  +++HAY ++ G+ +   + NAL++ Y KCG  + A   F    E D+V+W  +
Sbjct: 512 TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIM 571

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           +  +  HGL   ++ +F +M+     PD + F+ +L ACS  G+V +G   F++M   + 
Sbjct: 572 LSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFS 631

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P+ +HY C+ DLL RVG L EAY+L+  MPI+P +   GA +  C++H  + L + AA
Sbjct: 632 IVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAA 691

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           + +LELEP+    + L+ ++Y     W  VAR+RK MR+    +  GCSW+E+ G  H F
Sbjct: 692 KVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAF 751

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           ++ D SHPQ   +  +L  ++  M+    +   ++ DKE+ E
Sbjct: 752 LTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSE 793



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 204/392 (52%), Gaps = 9/392 (2%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           L L N +L + V+        ++F +M  R++ +WN ++ G    G        + RML 
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             +R D  TF  +LR C    D  +GR +H+ +L+ GFG    V +ALV +Y KCG +  
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D + WN M++ +  N   +  + +F  M    ++ +  T +S+  + G 
Sbjct: 251 ARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGM 310

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L      +++HG  +K+ F +DV    SL+ MY   G + DA ++F  M  K+ +SW  M
Sbjct: 311 LSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL---ASILSSCGSLSISCETRQVHAYAIK 392
           + G+ +NG   +A+++   M   +  PD+VT+    +  +  G L +     ++H  A  
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGI---KLHELAQN 427

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G   ++ + NAL+  Y+K   I  A++ F  + E D+V+W+S+I  + F+  S E++  
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYY 487

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           F  ML H V+P+S+ F+  LSAC+  G +  G
Sbjct: 488 FRYMLGH-VKPNSVTFIAALSACAATGALRSG 518



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 172/322 (53%), Gaps = 13/322 (4%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           +RAC +AD         SF L++G        +A++ +  + G +  A RVF ++  RD+
Sbjct: 116 MRACARAD-----AEHPSFGLRLG--------NAMLSMLVRFGEIWHAWRVFAKMPERDV 162

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
             WNVMV  Y      + A+ ++  M   GM+ D +TF  ++ +CG +   ++GR++H  
Sbjct: 163 FSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAH 222

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V++  F  +V V  +LV MYAK G+I  A +VFDGM   + +SWN M+ G  +N +    
Sbjct: 223 VLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAG 282

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++L   ML+    P+ +T+ S+  + G LS     +++H +A+K G    ++  N+LI  
Sbjct: 283 LELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQM 342

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+  G +  A + F  ++  D ++WT++I  Y  +G   +++EV+  M  H V PD +  
Sbjct: 343 YTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTI 402

Query: 469 LEVLSACSHGGLVSEGLRYFNL 490
              L+AC+  G +  G++   L
Sbjct: 403 ASALAACACLGRLDVGIKLHEL 424



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G +LH      G    + + N +L +Y K K  D   ++F  M  +++V+W+++I
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 137 SGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           +G   N       Y+ R +L +V+ + +TF + L AC     +  G+ +H+++L+ G G 
Sbjct: 473 AGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGS 532

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
             +V +AL+DLY KCG    A   F     +D+V WN+M+S +  + LGD A+++FN M 
Sbjct: 533 EGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMV 592

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             G   D  TF +L+ +C   G    G ++ H +  K S   ++     +VD+ ++ G +
Sbjct: 593 EMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKL 652

Query: 315 DDACRVFDGMTAK-NVVSWNTMVVG 338
            +A  + + M  K +   W  ++ G
Sbjct: 653 TEAYNLINRMPIKPDAAVWGALLNG 677


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 309/561 (55%), Gaps = 34/561 (6%)

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNV 158
           +N +L  YVK    D   +LFD M  R++V+WN ++S +   G           M    V
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           RLD  T+ S L AC +   +  G++LH+ +++    ++ +V+SALV+LY K G  ++A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+ +  R+ V W V++S +        ++ +FN MR E M  D F  ++L++ C +   
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---------------------------- 310
             LGRQ+H L +K      V+V+ SL+ MYAK                            
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 311 ---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVT 366
               GN+  A   FDGM+ KNV++WN M+  + Q+G   + +++ + ML   +  PD VT
Sbjct: 447 YSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVT 506

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             ++   C  L  +    Q+    +K G+    S+ NA+I  YSKCG I  A + F  + 
Sbjct: 507 YVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V+W ++I  Y+ HG+ K++IE+F+ +L    +PD I+++ VLS CSH GLV EG  
Sbjct: 567 VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKF 626

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF++M   ++I P  EH++C+ DLLGR G L EA DL+  MP++P ++  GA + ACK+H
Sbjct: 627 YFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIH 686

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G+  LA+ AA+ + EL+     +Y L++ +YA      D A++RK+MRD    K PG SW
Sbjct: 687 GNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSW 746

Query: 607 IEIAGEIHTFVSSDRSHPQAV 627
           +E+  ++H F + D SHPQ +
Sbjct: 747 MEVDNKVHVFKADDVSHPQVL 767



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 228/488 (46%), Gaps = 70/488 (14%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL------------------------- 120
           H  ++ +GL + + LQN +LH Y+ C A  D  +L                         
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 121 -------FDEMRVRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLR 170
                  F  M  R++ +WNTL+SG         ++  +       +   +  T    ++
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR------------ 218
           +C       +  +L + + K     +  V++ALVD++ +CG V+ A R            
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 219 -------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
                              +FD +  RD+V WN+MVS  + +     A+ +   M+ +G+
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T++S + +C  L S + G+Q+H  VI+    +D  VA++LV++YAK+G   +A  
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +  +N V+W  ++ GF Q G   E+V+L   M       D+  LA+++S C S   
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
            C  RQ+H+  +K+G    + + N+LI+ Y+KC ++  A   F  + E D+V+WTS+I A
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y+  G   ++ E F+ M    V    I +  +L A    G   +GLR + +M+S+ ++ P
Sbjct: 447 YSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 502

Query: 500 DSEHYTCL 507
           D   Y  L
Sbjct: 503 DWVTYVTL 510



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 220/466 (47%), Gaps = 45/466 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ +L   A+   L+ GKQLH+ +++        + + ++ +Y K   F + + +F+ + 
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 332

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN V W  LISG +   C       F +M  + + LD     +L+  C    D+ +GR+
Sbjct: 333 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 392

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKC-------------------------------GF 212
           LHS  LK G      VS++L+ +Y KC                               G 
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 452

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVN 271
           V  AR  FD +  ++++ WN M+  Y  +   +  + ++ +M   E ++ D+ T+ +L  
Sbjct: 453 VAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFK 512

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
            C  LG++KLG QI G  +K    +D  VA +++ MY+K G I +A +VFD +  K++VS
Sbjct: 513 GCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 572

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR-----QV 386
           WN M+ G+ Q+G G++A+++  D+L+    PD ++  ++LS C    +  E +       
Sbjct: 573 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMK 632

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGL 445
            A+ I  G++ F    + +++   + G +  A      +  +P    W +++ A   HG 
Sbjct: 633 RAHNISPGLEHF----SCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG- 687

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           + E  E+  K +     PDS +++ +    +  G   +  +   LM
Sbjct: 688 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLM 733


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 311/569 (54%), Gaps = 5/569 (0%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L  G+Q+H+ ++K      + + N ++++Y K       EK F      ++++WNT+IS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 139  II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE---VGRRLHSFILKVGF 193
                N        FR +L D ++ D  T  S+LRAC   D+ E   +G ++H + +K G 
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 194  GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
              + FVS+AL+DLY K G +++A  +       DL  WN ++  Y  +     A+  F+L
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 254  MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
            M   G+  D  T ++ + + G L + K G+QI    IK  F+ D+ V++ ++DMY K G+
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 314  IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
            + +A  +F  ++  + V+W TM+ G+ +NGD   A+ +   M      PDE T A+++ +
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 374  CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
               L+   + +Q+HA  +K        +  +L++ Y KCGS+  A + F  +    +V W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 434  TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             +++   A HG   E++ +F  M S+ ++PD + F+ VLSACSH GL SE  +YF+ M  
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 494  DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
             Y I P+ EHY+CL D LGR G + EA +++ASMP +  +    A +GAC+  G    AK
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAK 1389

Query: 554  WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
              A+KLL L+PS    Y L+SN+YA+ R W DV   R MM+     K PG SWI++  ++
Sbjct: 1390 RVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449

Query: 614  HTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            H FV  DRSHPQA  +Y  +  +   + E
Sbjct: 1450 HLFVVDDRSHPQASLIYEKIEDLMKRIRE 1478



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 244/478 (51%), Gaps = 21/478 (4%)

Query: 63   HSFYSQALKVSAKF---GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
            +SF  +AL+  + F   GF      LH  I   G  N     N+  H   + KA+    K
Sbjct: 796  NSFQDEALRFFSAFHRSGFXPDFSNLHCVI---GGVNSDVSNNRKRHAE-QVKAY--AMK 849

Query: 120  LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
            +F   +  NI  WN  ++  ++ G  V     F+ +L   +  D +T   +L A V ADD
Sbjct: 850  MFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 178  IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
            +++G ++H+ ++K  F     VS++L+++Y K G V  A + F      DL+ WN M+S 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 238  YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK---LGRQIHGLVIKQSF 294
            YA N L   AI  F  +  +G+K D FT +S++ +C T    +   LG Q+H   IK   
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 295  DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
              D  V+T+L+D+Y+K G +D+A  +  G    ++ SWN ++ G+ ++   R+A++    
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 355  MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
            M +     DE+TLA+ + + G L    + +Q+ AYAIK G    L + + +++ Y KCG 
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 415  IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
            +  AL+ FG +  PD V WT++I  Y  +G    ++ V+  M    V+PD   F  ++ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 475  CSHGGLVSEGLR-YFNLMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPI 529
             S    + +G + + N++  DY +    +H+  T L D+  + G + +AY +   M +
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 212/460 (46%), Gaps = 44/460 (9%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ GK+ H+ I+  G      L N ++ +Y KC +     ++FD+   R++VTWN++++ 
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 139  IINCGG----NVTPYFRRMLL---DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
                      NV   FR   L       +  +T   LL+ C+ +  ++V   +H + +K+
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 192  GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
            GF L+ FVS ALV++Y K G V  AR +FD++  RD VLWNVM+  Y  N   D A+  F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 252  NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
            +     G   D+     ++    +  S+   R+ H   +K                    
Sbjct: 807  SAFHRSGFXPDFSNLHCVIGGVNSDVSNN--RKRHAEQVKAY------------------ 846

Query: 312  GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
                 A ++F      N+ +WN  +  F   G    A+   + +L+ +   D VTL  IL
Sbjct: 847  -----AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 372  SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            S+           Q+HA  IK+     + + N+L+N YSK G +  A + F +  E DL+
Sbjct: 902  SAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLI 961

Query: 432  TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            +W ++I +YA + L  E+I  F  +L   ++PD      VL ACS G    EG  YF L 
Sbjct: 962  SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLG 1017

Query: 492  ISDYH-------ILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
             S  H       I+ DS   T L DL  + G + EA  LL
Sbjct: 1018 -SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 320/599 (53%), Gaps = 5/599 (0%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+   +  A     + G QLH H +K        +    L +Y KC    D  K+F
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVF 297

Query: 122 DEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           + +      ++N +I G    + G      F+ +    +  D I+ +  L AC       
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHL 357

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH   +K G G N  V++ ++D+YGKCG + +A  +FD++  RD V WN +++ + 
Sbjct: 358 EGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHE 417

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N      +++F  M    M+ D FT+ S+V +C    +   G +IHG ++K    LD  
Sbjct: 418 QNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWF 477

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V ++LVDMY K G + +A ++ D +  K  VSWN+++ GF        A +    ML+  
Sbjct: 478 VGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG 537

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  T A++L  C +++     +Q+HA  +K  + + + I + L++ YSKCG++  + 
Sbjct: 538 VIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSR 597

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F    + D VTW+++I AYA+HG  +++I++FE+M    V+P+   F+ VL AC+H G
Sbjct: 598 LMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMG 657

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            V +GL YF +M S Y + P  EHY+C+ DLLGR   + EA  L+ SM  E         
Sbjct: 658 YVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTL 717

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  CK+ G++ +A+ A   LL+L+P     Y L++NVYA+   W +VA++R +M++    
Sbjct: 718 LSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLK 777

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           K PGCSWIE+  E+HTF+  D++HP++  +Y        L++E   +G+   +D  +DE
Sbjct: 778 KEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYE---QTHLLVDEMKWAGYVPDIDSMLDE 833



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 243/488 (49%), Gaps = 34/488 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDM- 117
           +S  L+  +    L  GKQ H+ ++       + + N ++  Y K        K FD M 
Sbjct: 9   FSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMP 68

Query: 118 -----------------------EKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRR 152
                                  + LFD M  R++V+WN+L+S  ++ G N      F R
Sbjct: 69  HRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M    +  D+ TF+ +L+AC   +D  +G ++H   +++GF  +    SALVD+Y KC  
Sbjct: 129 MRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK 188

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++ A R+F E+  R+LV W+ +++ Y  N      + +F  M   GM     T++S+  S
Sbjct: 189 LDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRS 248

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  L + KLG Q+HG  +K  F  D ++ T+ +DMYAK   + DA +VF+ +      S+
Sbjct: 249 CAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSY 308

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++VG+ +   G +A+++ + + +     DE++L+  L++C  +    E  Q+H  A+K
Sbjct: 309 NAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVK 368

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G+   + + N +++ Y KCG++  A   F  ++  D V+W +II A+  +    +++ +
Sbjct: 369 CGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSL 428

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F  ML   + PD   +  V+ AC+    ++ G+     ++     L D    + L D+ G
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGL-DWFVGSALVDMYG 487

Query: 513 RVGLLVEA 520
           + G+L+EA
Sbjct: 488 KCGMLMEA 495



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 243/510 (47%), Gaps = 6/510 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           ++ +S  LK  +       G Q+H   +++G  N +   + ++ +Y KCK  D   ++F 
Sbjct: 138 YATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFR 197

Query: 123 EMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           EM  RN+V W+ +I+G +     +     F+ ML   + +   T+ S+ R+C      ++
Sbjct: 198 EMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKL 257

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G +LH   LK  F  +  + +A +D+Y KC  + DA +VF+ +       +N ++  YA 
Sbjct: 258 GTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYAR 317

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
              G  A+ +F  ++   +  D  + S  + +C  +     G Q+HGL +K     ++ V
Sbjct: 318 QDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICV 377

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           A +++DMY K G + +AC +FD M  ++ VSWN ++    QN +  + + L   ML+ + 
Sbjct: 378 ANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTM 437

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD+ T  S++ +C          ++H   +K+G+     + +AL++ Y KCG +  A +
Sbjct: 438 EPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEK 497

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
               ++E   V+W SII  ++    S+ +   F +ML   V PD+  +  VL  C++   
Sbjct: 498 IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMAT 557

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           +  G +  +  I   ++  D    + L D+  + G + ++  +    P      T  A I
Sbjct: 558 IELG-KQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYV-TWSAMI 615

Query: 541 GACKV--HGSIGLAKWAAEKLLELEPSKPV 568
            A     HG   +  +   +LL ++P+  +
Sbjct: 616 CAYAYHGHGEQAIKLFEEMQLLNVKPNHTI 645



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 191/406 (47%), Gaps = 54/406 (13%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF+ +L+ C     +  G++ H+ ++   F    +V++ LV  Y K   +  A +VFD +
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 224 LCRDLVLWNVMV-------------------------------SCYALNCLGDGAIAVFN 252
             RD++ WN M+                               SCY  N +   +I +F 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR   +  DY TFS ++ +C  +    LG Q+H L I+  F+ DV+  ++LVDMY+K  
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            +D A R+F  M  +N+V W+ ++ G+ QN    E +KL +DML+      + T AS+  
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           SC  LS      Q+H +A+K+       I  A ++ Y+KC  ++ A + F ++  P   +
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQS 307

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLV 481
           + +II  YA      +++E+F+ +    +  D I+    L+ACS           HG  V
Sbjct: 308 YNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAV 367

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
             GL  FN+ +++            + D+ G+ G LVEA  +   M
Sbjct: 368 KCGLG-FNICVAN-----------TILDMYGKCGALVEACTIFDDM 401



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 48/320 (15%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           FTFS ++  C  L +   G+Q H  +I  SF   + VA  LV  Y K+ N++ A +VFD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 324 MTAKNVVSWNTMVVGFGQ-------------------------------NGDGREAVKLL 352
           M  ++V+SWNTM+ G+ +                               NG  R+++++ 
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M       D  T + +L +C  +       QVH  AI+ G +  +   +AL++ YSKC
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
             + GA + F  + E +LV W+++I  Y  +    E +++F+ ML   +      +  V 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 473 SACSHGGLVSEGLRYFNL--------MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            +C+       GL  F L        + SD+    DS   T   D+  +   + +A+ + 
Sbjct: 247 RSCA-------GLSAFKLGTQLHGHALKSDFAY--DSIIGTATLDMYAKCDRMSDAWKVF 297

Query: 525 ASMPIEPRSDTLGAFIGACK 544
            ++P  PR       +G  +
Sbjct: 298 NTLPNPPRQSYNAIIVGYAR 317


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 182/556 (32%), Positives = 320/556 (57%), Gaps = 7/556 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A    +++G+++H  ++KLG  + + + N +L  Y  C    D  ++FDEM  +++
Sbjct: 48  LKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDL 107

Query: 130 VTWNTLISGIINCGG----NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           V+WNT+I G+ +  G    +    FR M+ + ++ + IT +S L   V+ +  + GR +H
Sbjct: 108 VSWNTMI-GVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVH 166

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +++G   + F++++L+D+Y K G   +A  VF ++  +++V WN M++ +A N    
Sbjct: 167 GSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFEL 226

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +   M+  G   +  TF++++ +C  +G  + G++IH   I      D+ V+ +L 
Sbjct: 227 VAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALT 286

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMYAK+G++  A  VFD  + ++ VS+N ++VG  Q  D  E++ L  +M       D V
Sbjct: 287 DMYAKSGHLKLARNVFD-TSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNV 345

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           +    LS+C +L+   + +++H + ++      L + N+L++ Y+KCG I  A   F  +
Sbjct: 346 SFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRM 405

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              D+ +W ++I  Y   G    +I++FE M    V  DS++F+ VLSACSHGGL+ +G 
Sbjct: 406 TNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGR 465

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           +YF+ + +   I P   HY C+ DLLGR GL+ EA +L+  +PI P ++  GA +GAC++
Sbjct: 466 KYFDELKAR-GIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRI 524

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           +G++ LA WAAE L EL+P     Y L+SN+YA    W +  R+R++M+     K PGCS
Sbjct: 525 YGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCS 584

Query: 606 WIEIAGEIHTFVSSDR 621
           W++I  + H FV  ++
Sbjct: 585 WVQIGEQAHAFVVGEK 600



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/408 (33%), Positives = 216/408 (52%), Gaps = 17/408 (4%)

Query: 132 WNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           WNTLI G  I   GG +  Y  +M+   VR D  TF  +L+AC  A ++  GR +H  ++
Sbjct: 10  WNTLIRGYSIAGVGGGLEVY-NQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG-DGAI 248
           K+GF  + FV + L+  YG CG + DA RVFDE+  +DLV WN M+  +++N      A+
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F LM  EG+K +  T SS +     L   K GR++HG  I+   + D+ +A SL+DMY
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMY 188

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK+G+  +A  VF  + AKNVVSWN M+  F QN     AV L+R M      P+ VT  
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFT 248

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           ++L +C  + +    +++HA +I  G    L + NAL + Y+K G +  A   F +    
Sbjct: 249 NVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLR- 307

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D V++  +I  ++      ES+ +F +M    ++ D+++F+  LSAC++   + +G    
Sbjct: 308 DEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIH 367

Query: 489 NLMISD-YHILPDSEHYTCLTDLL------GRVGLLVEAYDLLASMPI 529
             ++   +HI     H      LL      GR+GL    +D + +  +
Sbjct: 368 GFLLRKLFHI-----HLFVANSLLDFYTKCGRIGLARNIFDRMTNKDV 410



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 202/381 (53%), Gaps = 4/381 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L V  +  F + G+++H   +++GL + + + N ++ +Y K     +   +F ++  
Sbjct: 147 SSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDA 206

Query: 127 RNIVTWNTLISGII-NCGGNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRL 184
           +N+V+WN +I+    N    V     R + D   L + +TF ++L AC +   +  G+ +
Sbjct: 207 KNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEI 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  + +G   + FVS+AL D+Y K G ++ AR VFD  L RD V +N+++  ++     
Sbjct: 267 HARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGHSQTSDC 325

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             ++++F+ M+L G+K D  +F   +++C  L + K G++IHG ++++ F + + VA SL
Sbjct: 326 SESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSL 385

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D Y K G I  A  +FD MT K+V SWNTM++G+G  G+   A+ L  +M +     D 
Sbjct: 386 LDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDS 445

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           V+  ++LS+C    +  + R+        G++        +++   + G +  A +    
Sbjct: 446 VSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKG 505

Query: 425 VK-EPDLVTWTSIIGAYAFHG 444
           +   PD   W +++GA   +G
Sbjct: 506 LPIVPDANIWGALLGACRIYG 526



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 140/256 (54%), Gaps = 2/256 (0%)

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
           LWN ++  Y++  +G G + V+N M   G++ D  TF  ++ +C      + GR++HG V
Sbjct: 9   LWNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSV 67

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG-DGREA 348
           +K  F+ DV V  +L+  Y   G + DA RVFD M  K++VSWNTM+  F  NG   R+A
Sbjct: 68  VKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + + R M+     P+ +T++S L     L      R+VH  +I+ G+++ + I N+LI+ 
Sbjct: 128 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDM 187

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+K G    A   F  +   ++V+W ++I  +A +     ++ +  +M  +   P+S+ F
Sbjct: 188 YAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTF 247

Query: 469 LEVLSACSHGGLVSEG 484
             VL AC+  GLV  G
Sbjct: 248 TNVLPACARMGLVRPG 263



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 145/283 (51%), Gaps = 10/283 (3%)

Query: 45  LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV 104
           L  Q+++ G +  S       ++  L   A+ G ++ GK++H+  + +G    L + N +
Sbjct: 231 LVRQMQDYGELPNSVT-----FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNAL 285

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG---IINCGGNVTPYFRRMLLDNVRLD 161
             +Y K         +FD   +R+ V++N LI G     +C  +++  F  M L  ++ D
Sbjct: 286 TDMYAKSGHLKLARNVFD-TSLRDEVSYNILIVGHSQTSDCSESLS-LFSEMQLMGLKQD 343

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           +++F   L AC     I+ G+ +H F+L+  F ++ FV+++L+D Y KCG +  AR +FD
Sbjct: 344 NVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFD 403

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  +D+  WN M+  Y +    D AI +F  MR + ++ D  +F +++++C   G  + 
Sbjct: 404 RMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEK 463

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           GR+    +  +  +   +    +VD+  + G +++A  +  G+
Sbjct: 464 GRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGL 506



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 41/265 (15%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A    ++QGK++H  +++      L + N +L  Y KC        +FD M  ++
Sbjct: 350 ALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKD 409

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           + +WNT+I G    G        F  M  D+V  D ++F ++L AC     +E GR+   
Sbjct: 410 VASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFD 469

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLG 244
            +   G        + +VDL G+ G +E+A  +   + +  D  +W  ++ +C     L 
Sbjct: 470 ELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLE 529

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A A  +L  L+     Y+T                                      L
Sbjct: 530 LAAWAAEHLFELKPEHSGYYTL-------------------------------------L 552

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNV 329
            +MYA+ G  D+A R+ + M ++ V
Sbjct: 553 SNMYAETGRWDEANRIRELMKSRGV 577


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 286/461 (62%), Gaps = 2/461 (0%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           + +L+ C +   +   +  H  I+++    +  + + L++ Y KCGFVE AR+VFD +L 
Sbjct: 57  HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE 116

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R LV WN M+  Y  N +   A+ +F  MR EG K   FT SS++++CG    +   +++
Sbjct: 117 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 176

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L +K   DL++ V T+L+D+YAK G I DA +VF+ M  K+ V+W++MV G+ QN + 
Sbjct: 177 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 236

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+ L R   + S   ++ TL+S++ +C +L+   E +Q+HA   K+G  + + + ++ 
Sbjct: 237 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSA 296

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+KCGS+  +   F  V+E +L  W +II  +A H   KE + +FEKM    + P+ 
Sbjct: 297 VDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 356

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           + F  +LS C H GLV EG R+F LM + Y + P+  HY+C+ D+LGR GLL EAY+L+ 
Sbjct: 357 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 416

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           S+P +P +   G+ + +C+V+ ++ LA+ AAEKL ELEP    N+ L+SN+YA+ + W +
Sbjct: 417 SIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEE 476

Query: 586 VARLRKMMRDNCD-HKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           +A+ RK++RD CD  KV G SWI+I  ++HTF   +  HP+
Sbjct: 477 IAKSRKLLRD-CDVKKVRGKSWIDIKDKVHTFSVGESGHPR 516



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 215/416 (51%), Gaps = 16/416 (3%)

Query: 35  TNAQKHDRSVLSS--QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKL 92
           T++   + SVL+S  Q   S   + +  S  +   + L++ A+ G + + K  H  I+++
Sbjct: 23  TSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRI 82

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYF 150
            L   ++L N +++ Y KC   +   ++FD M  R++V+WNT+I               F
Sbjct: 83  DLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIF 142

Query: 151 RRMLLDNVRLDHITFNSLLRAC-VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
             M  +  +    T +S+L AC V  D +E  ++LH   +K    LN +V +AL+DLY K
Sbjct: 143 LEMRNEGFKFSEFTISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAK 201

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG ++DA +VF+ +  +  V W+ MV+ Y  N   + A+ ++   +   ++ + FT SS+
Sbjct: 202 CGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 261

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + +C  L +   G+Q+H ++ K  F  +V VA+S VDMYAK G++ ++  +F  +  KN+
Sbjct: 262 ICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 321

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH-- 387
             WNT++ GF ++   +E + L   M Q    P+EVT +S+LS CG   +  E R+    
Sbjct: 322 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 381

Query: 388 ---AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
               Y +   V  +    + +++   + G ++ A +   S+  +P    W S++ +
Sbjct: 382 MRTTYGLSPNVVHY----SCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 433


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 191/579 (32%), Positives = 319/579 (55%), Gaps = 4/579 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           AL     F + + GK++H+ ++K     ++L + N ++ +Y +C      E++  +M   
Sbjct: 290 ALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNA 349

Query: 128 NIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++VTWN+LI G +          +F  M+    + D ++  S++ A  +  ++  G  LH
Sbjct: 350 DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELH 409

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           ++++K G+  N  V + L+D+Y KC       R F  +  +DL+ W  +++ YA N    
Sbjct: 410 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHV 469

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  +  + M+ D     S++ +   L S  + ++IH  ++++   LD ++   LV
Sbjct: 470 EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELV 528

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K  N+  A RVF+ +  K+VVSW +M+     NG+  EAV+L R M++     D V
Sbjct: 529 DVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 588

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            L  ILS+  SLS   + R++H Y ++ G     SI  A+++ Y+ CG +  A   F  +
Sbjct: 589 ALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI 648

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +   L+ +TS+I AY  HG  K ++E+F+KM    V PD I+FL +L ACSH GL+ EG 
Sbjct: 649 ERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 708

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            +  +M  +Y + P  EHY CL D+LGR   +VEA++ +  M  EP ++   A + AC+ 
Sbjct: 709 GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRS 768

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H    + + AA++LLELEP  P N  LVSNV+A +  W DV ++R  M+ +   K PGCS
Sbjct: 769 HSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCS 828

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           WIE+ G++H F + D+SHP++  +Y  L  V   +E   
Sbjct: 829 WIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREK 867



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 225/416 (54%), Gaps = 5/416 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEM 124
           ++  L++  K   + QG+QLHS I K     +L  L  +++ +Y KC + DD EK+FDEM
Sbjct: 83  FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEM 142

Query: 125 RVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R    WNT+I   ++ G   +    +  M ++ V L   +F +LL+AC +  DI  G 
Sbjct: 143 PDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGS 202

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALN 241
            LHS ++K+G+    F+ +ALV +Y K   +  ARR+FD    + D VLWN ++S Y+ +
Sbjct: 203 ELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTS 262

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLV 300
                 + +F  M + G   + +T  S + +C     +KLG++IH  V+K S    ++ V
Sbjct: 263 GKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYV 322

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L+ MY + G +  A R+   M   +VV+WN+++ G+ QN   +EA++   DM+    
Sbjct: 323 CNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGH 382

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             DEV++ SI+++ G LS      ++HAY IK+G  + L + N LI+ YSKC       +
Sbjct: 383 KSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGR 442

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            F  + + DL++WT++I  YA +    E++E+F  +    +  D +    +L A S
Sbjct: 443 AFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/572 (27%), Positives = 272/572 (47%), Gaps = 44/572 (7%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +   LK  AK   ++ G +LHS ++KLG  +   + N ++ +Y K        +LFD 
Sbjct: 183 SSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDG 242

Query: 124 MRVR-NIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            + + + V WN+++S     G ++     FR M +     +  T  S L AC      ++
Sbjct: 243 FQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 302

Query: 181 GRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           G+ +H+ +LK        +V +AL+ +Y +CG +  A R+  ++   D+V WN ++  Y 
Sbjct: 303 GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYV 362

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N +   A+  F+ M   G K D  + +S++ + G L +   G ++H  VIK  +D ++ 
Sbjct: 363 QNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQ 422

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +L+DMY+K        R F  M  K+++SW T++ G+ QN    EA++L RD+ +  
Sbjct: 423 VGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKR 482

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              DE+ L SIL +   L      +++H + ++ G+   + I+N L++ Y KC ++  A 
Sbjct: 483 MEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYAT 541

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F S+K  D+V+WTS+I + A +G   E++E+F +M+   +  DS+A L +LSA +   
Sbjct: 542 RVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLS 601

Query: 480 LVSEGLRYFNLMISDYHILPDS------EHYTCLTDL---------LGRVGLL------- 517
            +++G      ++     L  S      + Y C  DL         + R GLL       
Sbjct: 602 ALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMIN 661

Query: 518 -----------VEAYDLLASMPIEPRSDTLGAFIGACKVHGSI----GLAKWAAEKLLEL 562
                      VE +D +    + P   +  A + AC   G +    G  K   E   EL
Sbjct: 662 AYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLK-IMEHEYEL 720

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
           EP  P +Y  + ++     C  +     KMM+
Sbjct: 721 EPW-PEHYVCLVDMLGRANCVVEAFEFVKMMK 751



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 180/335 (53%), Gaps = 5/335 (1%)

Query: 144 GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV--GFGLNCFVSS 201
           G +T  F+R+ +         F  +L  C +   +  GR+LHS I K    F L+ F++ 
Sbjct: 62  GVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAG 120

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            LV +YGKCG ++DA +VFDE+  R    WN M+  Y  N     A+A++  MR+EG+  
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
              +F +L+ +C  L   + G ++H L++K  +     +  +LV MYAKN ++  A R+F
Sbjct: 181 GLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLF 240

Query: 322 DGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           DG   K + V WN+++  +  +G   E ++L R+M      P+  T+ S L++C   S +
Sbjct: 241 DGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYA 300

Query: 381 CETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
              +++HA  +K+   +  L + NALI  Y++CG +  A +    +   D+VTW S+I  
Sbjct: 301 KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKG 360

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           Y  + + KE++E F  M++   + D ++   +++A
Sbjct: 361 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 10/301 (3%)

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           V V    L C        F  + +         F+ ++  CG   +   GRQ+H  + K 
Sbjct: 50  VQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKT 109

Query: 293 --SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
             SF+LD L A  LV MY K G++DDA +VFD M  +   +WNTM+  +  NG+   A+ 
Sbjct: 110 FPSFELDFL-AGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALA 168

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L  +M          +  ++L +C  L       ++H+  +K G  +   I NAL++ Y+
Sbjct: 169 LYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYA 228

Query: 411 KCGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           K   ++ A + F   +E  D V W SI+ +Y+  G S E++E+F +M      P+S   +
Sbjct: 229 KNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIV 288

Query: 470 EVLSACSHGGLVSEGLR-YFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLAS 526
             L+AC        G   + +++ S  H    SE Y C  L  +  R G + +A  +L  
Sbjct: 289 SALTACDGFSYAKLGKEIHASVLKSSTH---SSELYVCNALIAMYTRCGKMPQAERILRQ 345

Query: 527 M 527
           M
Sbjct: 346 M 346


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 187/551 (33%), Positives = 311/551 (56%), Gaps = 4/551 (0%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLH--VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           ++H+H++K  L  K  +   +L     +   + D    +F ++   +   +N +I G   
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                     F+ M  ++V+ D  TF  +L+ C +   +  G ++H+ I+K GFG + FV
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            + L+ +Y  CG VE ARRVFDE+  R++  WN M + Y  +   +  + +F+ M    +
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDI 221

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T  S++ +CG L   +LG  I+  V ++    +  + TSLVDMYAK G +D A R
Sbjct: 222 RFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARR 281

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  ++VV+W+ M+ G+ Q    REA+ L  +M + +  P+E+T+ SILSSC  L  
Sbjct: 282 LFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGA 341

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               + VH +  K  ++  +++  AL++ Y+KCGS+  +++ FG +   ++++WT +I  
Sbjct: 342 LETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQG 401

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
            A +G  K+++E F  ML   V P+ + F+ VLSACSH GLV EG   F  M  D+ I P
Sbjct: 402 LASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEP 461

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ D+LGR GL+ EA+  + +MPI+P +      + +CKVH ++ + + + ++L
Sbjct: 462 RIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQL 521

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           + LEP+   +Y L+SN+YAS   W D  ++R  M++    K PGCS IE+ G IH F + 
Sbjct: 522 IILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAE 581

Query: 620 DRSHPQAVHMY 630
           D  H Q+  +Y
Sbjct: 582 DNVHSQSEEIY 592



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 228/412 (55%), Gaps = 9/412 (2%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +HE++     F +   LKV ++   L +G+Q+H+ IMK G  +   ++N ++H+Y  C  
Sbjct: 115 MHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGE 174

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRA 171
            +   ++FDEM  RN+ TWN++ +G    G    V   F  ML  ++R D +T  S+L A
Sbjct: 175 VEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTA 234

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C +  D+E+G  ++ ++ + G   N  + ++LVD+Y KCG V+ ARR+FD++  RD+V W
Sbjct: 235 CGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAW 294

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           + M+S Y+       A+ +F+ M+   +  +  T  S+++SC  LG+ + G+ +H  + K
Sbjct: 295 SAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKK 354

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
           +   L V + T+L+D YAK G+++ +  VF  M  KNV+SW  ++ G   NG G++A++ 
Sbjct: 355 KRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEY 414

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYS 410
              ML+ +  P++VT   +LS+C    +  E R +     ++ G++  +     +++   
Sbjct: 415 FYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILG 474

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           + G I  A Q   ++  +P+ V W +++ +   H    +++E+ E+ L   +
Sbjct: 475 RAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH----KNVEIGEESLKQLI 522


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 331/605 (54%), Gaps = 15/605 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L    +      GK +H   +  GL  ++ L N ++ +Y KC+  D    LF+   
Sbjct: 113 YAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSD 172

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQA--DDIEVG 181
             + V+WN+LI+G    G    +     +M    +RL+  T  S L++C     + +  G
Sbjct: 173 ELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG 232

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + LH + +K G  L+  V +AL+D+Y K G++ DA ++F     +++V++N M++ +   
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQT 292

Query: 242 CLGDG-----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
              D      A+ +F+ M+ +G+K   FTFSS++  C  + + + G+QIH  + K +   
Sbjct: 293 EDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQS 352

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  + ++L+++Y+  G+ +D  + F+     ++VSW TM+ G+ QNG    A+ L  ++L
Sbjct: 353 DEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELL 412

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PDE  + ++LS+C  ++      QVH YA+K G+     ++N+ I+ Y+K G++ 
Sbjct: 413 ASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLD 472

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  +K PD+V+W+ +I + A HG +K++I +FE M S+ + P+ I FL VL+ACS
Sbjct: 473 SAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACS 532

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           HGGLV EGLRY+  M  DY +  + +H TC+ DLL R G L++A + + +          
Sbjct: 533 HGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMW 592

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
              +  C+++  I   K  AEKL+EL+P +  +Y L+ N+Y          ++R++M+D 
Sbjct: 593 RTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDR 652

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEM 656
              K PG SWIE+  E+H+FV  D SHP +  +Y  L    G++E+    G+   +D+++
Sbjct: 653 GIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKL---EGMLEKKRKIGY---IDQKI 706

Query: 657 DECTL 661
              T+
Sbjct: 707 QNVTI 711



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 221/420 (52%), Gaps = 9/420 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y++ ++ S+K G    GK  H+H++K      L L N  L++Y K     + +KLFD M 
Sbjct: 12  YTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMS 71

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+++++N LISG    G        F    +  ++LD  ++  +L AC Q  D  +G+ 
Sbjct: 72  ERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKV 131

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +  G G   F+++ L+D+Y KC  ++ AR +F+     D V WN +++ YA    
Sbjct: 132 IHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGA 191

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSC--GTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            +  + +   M   G++ + FT  S + SC          G+ +HG  +KQ  DLD++V 
Sbjct: 192 YEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVG 251

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----GREAVKLLRDML 356
           T+L+DMYAK G + DA ++F     +NVV +N M+ GF Q  D       EA+KL   M 
Sbjct: 252 TALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQ 311

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    P + T +SI+  C  +      +Q+HA+  K+ +Q+   I + LI  YS  GS  
Sbjct: 312 RQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTE 371

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             L+CF S  + D+V+WT++I  YA +G  + ++ +F ++L+   +PD      +LSAC+
Sbjct: 372 DQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACA 431



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 184/374 (49%), Gaps = 18/374 (4%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD + +  L++   ++     G+  H+ ++K  F    F+ +  ++LY K G + +A+++
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKL 66

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD +  R ++ +N+++S Y        AI +F+  R+  +K D F+++ ++++CG +   
Sbjct: 67  FDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDF 126

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
            LG+ IHGL I       V +   L+DMY K   ID A  +F+     + VSWN+++ G+
Sbjct: 127 ALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGY 186

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC--GSLSISCETRQVHAYAIKNGVQA 397
            + G   E +KLL  M       +  TL S L SC     ++    + +H Y +K G+  
Sbjct: 187 ARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDL 246

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY-AFHGLSK----ESIEV 452
            + +  AL++ Y+K G +  A+Q F +    ++V + ++I  +     + K    E++++
Sbjct: 247 DIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKL 306

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F +M    ++P    F  ++  C+H      G +  +  I  ++I  D        + +G
Sbjct: 307 FSQMQRQGIKPSDFTFSSIIKICNHIEAFEYG-KQIHAHICKHNIQSD--------EFIG 357

Query: 513 RVGLLVEAYDLLAS 526
               L+E Y LL S
Sbjct: 358 ST--LIELYSLLGS 369



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 25/280 (8%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D   ++ LV      GSS  G+  H  +IK +F+  + +  + +++Y+K G + +A ++F
Sbjct: 8   DSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLF 67

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D M+ ++V+S+N ++ G+G  G   +A+ L  +        D+ + A +LS+CG +    
Sbjct: 68  DRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFA 127

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             + +H  AI  G+   + + N LI+ Y KC  I  A   F S  E D V+W S+I  YA
Sbjct: 128 LGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYA 187

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-------------HGGLVSEGLRYF 488
             G  +E +++  KM    +R ++      L +C              HG  V +GL   
Sbjct: 188 RVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGL--- 244

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
                D  I+      T L D+  + G L +A  L  + P
Sbjct: 245 -----DLDIVVG----TALLDMYAKTGYLGDAIQLFRTSP 275


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 201/586 (34%), Positives = 331/586 (56%), Gaps = 7/586 (1%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--C 142
           +H+++ KLG      +   ++  Y  C   D   ++FD +  +++V+W  +++      C
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             +    F +M +   R ++ T ++ L++C   +  +VG+ +H   LKV +  + +V  A
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK-G 261
           L++LY K G + +A++ F+E+   DL+ W++M+S YA +     A+ +F  MR   +   
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           + FTF+S++ +C +L    LG QIH  V+K   D +V V+ +L+D+YAK G I+++ ++F
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLF 365

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
            G T KN V+WNT++VG+ Q GDG +A+ L  +ML     P EVT +S+L +  SL    
Sbjct: 366 TGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALE 425

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQ+H+  IK        + N+LI+ Y+KCG I  A   F  + + D V+W ++I  Y+
Sbjct: 426 PGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYS 485

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HGL  E++ +F+ M     +P+ + F+ VLSACS+ GL+ +G  +F  M+ DY I P  
Sbjct: 486 IHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCI 545

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           EHYTC+  LLGR G   EA  L+  +P +P      A +GAC +H ++ L K  A+++LE
Sbjct: 546 EHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLE 605

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           +EP     + L+SN+YA+ + W +VA +RK M+     K PG SW+E  G +H F   D 
Sbjct: 606 MEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDT 665

Query: 622 SHPQAVHMYAMLCTVFGLMEENNVSGHCNV--LDKEMDECT--LWL 663
           SHP    ++AML  ++    +      C+V  LD E DE    LW+
Sbjct: 666 SHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWM 711



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/509 (29%), Positives = 262/509 (51%), Gaps = 7/509 (1%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           +HS Y+  L+ + +      GK LH HI+K G    L  QN +L+ YV     +D  KLF
Sbjct: 3   SHS-YANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 122 DEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           DEM + N V++ TL  G               R+  +   ++   F +LL+  V  D  +
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
               +H+++ K+G   + FV +AL+D Y  CG V+ AR+VFD +  +D+V W  MV+CYA
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   + ++ +F  MR+ G + + FT S+ + SC  L + K+G+ +HG  +K  +D D+ 
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +L+++Y K+G I +A + F+ M   +++ W+ M+  + Q+   +EA++L   M Q S
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301

Query: 360 -FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              P+  T AS+L +C SL +     Q+H+  +K G+ + + + NAL++ Y+KCG I  +
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           ++ F    E + V W +II  Y   G  ++++ +F  ML   ++P  + +  VL A +  
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
             +  G +  +L I   +   DS     L D+  + G + +A      M  +    +  A
Sbjct: 422 VALEPGRQIHSLTIKTMYN-KDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEV-SWNA 479

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            I    +HG +G+       +++   SKP
Sbjct: 480 LICGYSIHG-LGMEALNLFDMMQQSNSKP 507



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 169/326 (51%), Gaps = 1/326 (0%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  ++ ++L+  ++  D   G+ LH  ILK G  L+ F  + L++ Y   GF+EDA ++
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE+   + V +  +   ++ +     A  +   +  EG + + F F++L+    ++  +
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
                +H  V K     D  V T+L+D Y+  GN+D A +VFDG+  K++VSW  MV  +
Sbjct: 121 DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            +N    +++ L   M    + P+  T+++ L SC  L      + VH  A+K      L
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDL 240

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LS 458
            +  AL+  Y+K G IA A Q F  + + DL+ W+ +I  YA    SKE++E+F +M  S
Sbjct: 241 YVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQS 300

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEG 484
             V P++  F  VL AC+   L++ G
Sbjct: 301 SVVVPNNFTFASVLQACASLVLLNLG 326


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 309/561 (55%), Gaps = 34/561 (6%)

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNV 158
           +N +L  YVK    D   +LFD M  R++V+WN ++S +   G           M    V
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           RLD  T+ S L AC +   +  G++LH+ +++    ++ +V+SALV+LY K G  ++A+ 
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+ +  R+ V W V++S +        ++ +FN MR E M  D F  ++L++ C +   
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---------------------------- 310
             LGRQ+H L +K      V+V+ SL+ MYAK                            
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 311 ---NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVT 366
               GN+  A   FDGM+ KNV++WN M+  + Q+G   + +++ + ML   +  PD VT
Sbjct: 467 YSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVT 526

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             ++   C  L  +    Q+    +K G+    S+ NA+I  YSKCG I  A + F  + 
Sbjct: 527 YVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLN 586

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+V+W ++I  Y+ HG+ K++IE+F+ +L    +PD I+++ VLS CSH GLV EG  
Sbjct: 587 VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKF 646

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF++M   ++I P  EH++C+ DLLGR G L EA DL+  MP++P ++  GA + ACK+H
Sbjct: 647 YFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIH 706

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G+  LA+ AA+ + EL+     +Y L++ +YA      D A++RK+MRD    K PG SW
Sbjct: 707 GNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSW 766

Query: 607 IEIAGEIHTFVSSDRSHPQAV 627
           +E+  ++H F + D SHPQ +
Sbjct: 767 MEVDNKVHVFKADDVSHPQVL 787



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 228/488 (46%), Gaps = 70/488 (14%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL------------------------- 120
           H  ++ +GL + + LQN +LH Y+ C A  D  +L                         
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 121 -------FDEMRVRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLR 170
                  F  M  R++ +WNTL+SG         ++  +       +   +  T    ++
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR------------ 218
           +C       +  +L + + K     +  V++ALVD++ +CG V+ A R            
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 219 -------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
                              +FD +  RD+V WN+MVS  + +     A+ +   M+ +G+
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D  T++S + +C  L S + G+Q+H  VI+    +D  VA++LV++YAK+G   +A  
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +  +N V+W  ++ GF Q G   E+V+L   M       D+  LA+++S C S   
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
            C  RQ+H+  +K+G    + + N+LI+ Y+KC ++  A   F  + E D+V+WTS+I A
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y+  G   ++ E F+ M    V    I +  +L A    G   +GLR + +M+S+ ++ P
Sbjct: 467 YSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 522

Query: 500 DSEHYTCL 507
           D   Y  L
Sbjct: 523 DWVTYVTL 530



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 220/466 (47%), Gaps = 45/466 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ +L   A+   L+ GKQLH+ +++        + + ++ +Y K   F + + +F+ + 
Sbjct: 293 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 352

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN V W  LISG +   C       F +M  + + LD     +L+  C    D+ +GR+
Sbjct: 353 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 412

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKC-------------------------------GF 212
           LHS  LK G      VS++L+ +Y KC                               G 
Sbjct: 413 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 472

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVN 271
           V  AR  FD +  ++++ WN M+  Y  +   +  + ++ +M   E ++ D+ T+ +L  
Sbjct: 473 VAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFK 532

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
            C  LG++KLG QI G  +K    +D  VA +++ MY+K G I +A +VFD +  K++VS
Sbjct: 533 GCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 592

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR-----QV 386
           WN M+ G+ Q+G G++A+++  D+L+    PD ++  ++LS C    +  E +       
Sbjct: 593 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMK 652

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGL 445
            A+ I  G++ F    + +++   + G +  A      +  +P    W +++ A   HG 
Sbjct: 653 RAHNISPGLEHF----SCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG- 707

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           + E  E+  K +     PDS +++ +    +  G   +  +   LM
Sbjct: 708 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLM 753


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 319/576 (55%), Gaps = 4/576 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           AL     F + + GK++H+ ++K     ++L + N ++ +Y +C      E++  +M   
Sbjct: 253 ALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNA 312

Query: 128 NIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++VTWN+LI G +          +F  M+    + D ++  S++ A  +  ++  G  LH
Sbjct: 313 DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELH 372

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           ++++K G+  N  V + L+D+Y KC       R F  +  +DL+ W  +++ YA N    
Sbjct: 373 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHV 432

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  +  + M+ D     S++ +   L S  + ++IH  ++++   LD ++   LV
Sbjct: 433 EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELV 491

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K  N+  A RVF+ +  K+VVSW +M+     NG+  EAV+L R M++     D V
Sbjct: 492 DVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 551

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            L  ILS+  SLS   + R++H Y ++ G     SI  A+++ Y+ CG +  A   F  +
Sbjct: 552 ALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI 611

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +   L+ +TS+I AY  HG  K ++E+F+KM    V PD I+FL +L ACSH GL+ EG 
Sbjct: 612 ERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 671

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            +  +M  +Y + P  EHY CL D+LGR   +VEA++ +  M  EP ++   A + AC+ 
Sbjct: 672 GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRS 731

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H    + + AA++LLELEP  P N  LVSNV+A +  W DV ++R  M+ +   K PGCS
Sbjct: 732 HSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCS 791

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           WIE+ G++H F + D+SHP++  +Y  L  V   +E
Sbjct: 792 WIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLE 827



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 196/363 (53%), Gaps = 4/363 (1%)

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           EK+FDEM  R    WNT+I   ++ G   +    +  M ++ V L   +F +LL+AC + 
Sbjct: 99  EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 158

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVM 234
            DI  G  LHS ++K+G+    F+ +ALV +Y K   +  ARR+FD    + D VLWN +
Sbjct: 159 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 218

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS- 293
           +S Y+ +      + +F  M + G   + +T  S + +C     +KLG++IH  V+K S 
Sbjct: 219 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 278

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
              ++ V  +L+ MY + G +  A R+   M   +VV+WN+++ G+ QN   +EA++   
Sbjct: 279 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 338

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
           DM+      DEV++ SI+++ G LS      ++HAY IK+G  + L + N LI+ YSKC 
Sbjct: 339 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 398

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
                 + F  + + DL++WT++I  YA +    E++E+F  +    +  D +    +L 
Sbjct: 399 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILR 458

Query: 474 ACS 476
           A S
Sbjct: 459 ASS 461



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/572 (27%), Positives = 272/572 (47%), Gaps = 44/572 (7%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +   LK  AK   ++ G +LHS ++KLG  +   + N ++ +Y K        +LFD 
Sbjct: 146 SSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDG 205

Query: 124 MRVR-NIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            + + + V WN+++S     G ++     FR M +     +  T  S L AC      ++
Sbjct: 206 FQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 265

Query: 181 GRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           G+ +H+ +LK        +V +AL+ +Y +CG +  A R+  ++   D+V WN ++  Y 
Sbjct: 266 GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYV 325

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N +   A+  F+ M   G K D  + +S++ + G L +   G ++H  VIK  +D ++ 
Sbjct: 326 QNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQ 385

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +L+DMY+K        R F  M  K+++SW T++ G+ QN    EA++L RD+ +  
Sbjct: 386 VGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKR 445

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              DE+ L SIL +   L      +++H + ++ G+   + I+N L++ Y KC ++  A 
Sbjct: 446 MEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYAT 504

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F S+K  D+V+WTS+I + A +G   E++E+F +M+   +  DS+A L +LSA +   
Sbjct: 505 RVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLS 564

Query: 480 LVSEGLRYFNLMISDYHILPDS------EHYTCLTDL---------LGRVGLL------- 517
            +++G      ++     L  S      + Y C  DL         + R GLL       
Sbjct: 565 ALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMIN 624

Query: 518 -----------VEAYDLLASMPIEPRSDTLGAFIGACKVHGSI----GLAKWAAEKLLEL 562
                      VE +D +    + P   +  A + AC   G +    G  K   E   EL
Sbjct: 625 AYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLK-IMEHEYEL 683

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
           EP  P +Y  + ++     C  +     KMM+
Sbjct: 684 EPW-PEHYVCLVDMLGRANCVVEAFEFVKMMK 714


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 311/569 (54%), Gaps = 5/569 (0%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L  G+Q+H+ ++K      + + N ++++Y K       EK F      ++++WNT+IS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 139  II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE---VGRRLHSFILKVGF 193
                N        FR +L D ++ D  T  S+LRAC   D+ E   +G ++H + +K G 
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 194  GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
              + FVS+AL+DLY K G +++A  +       DL  WN ++  Y  +     A+  F+L
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 254  MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
            M   G+  D  T ++ + + G L + K G+QI    IK  F+ D+ V++ ++DMY K G+
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 314  IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
            + +A  +F  ++  + V+W TM+ G+ +NGD   A+ +   M      PDE T A+++ +
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 374  CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
               L+   + +Q+HA  +K        +  +L++ Y KCGS+  A + F  +    +V W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 434  TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             +++   A HG   E++ +F  M S+ ++PD + F+ VLSACSH GL SE  +YF+ M  
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 494  DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
             Y I P+ EHY+CL D LGR G + EA +++ASMP +  +    A +GAC+  G    AK
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAK 1389

Query: 554  WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
              A+KLL L+PS    Y L+SN+YA+ R W DV   R MM+     K PG SWI++  ++
Sbjct: 1390 RVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449

Query: 614  HTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            H FV  DRSHPQA  +Y  +  +   + E
Sbjct: 1450 HLFVVDDRSHPQASLIYEKIEDLMKRIRE 1478



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 244/478 (51%), Gaps = 21/478 (4%)

Query: 63   HSFYSQALKVSAKF---GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
            +SF  +AL+  + F   GF      LH  I   G  N     N+  H   + KA+    K
Sbjct: 796  NSFQDEALRFFSAFHRSGFFPDFSNLHCVI---GGVNSDVSNNRKRHAE-QVKAY--AMK 849

Query: 120  LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
            +F   +  NI  WN  ++  ++ G  V     F+ +L   +  D +T   +L A V ADD
Sbjct: 850  MFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 178  IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
            +++G ++H+ ++K  F     VS++L+++Y K G V  A + F      DL+ WN M+S 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 238  YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK---LGRQIHGLVIKQSF 294
            YA N L   AI  F  +  +G+K D FT +S++ +C T    +   LG Q+H   IK   
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 295  DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
              D  V+T+L+D+Y+K G +D+A  +  G    ++ SWN ++ G+ ++   R+A++    
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 355  MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
            M +     DE+TLA+ + + G L    + +Q+ AYAIK G    L + + +++ Y KCG 
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 415  IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
            +  AL+ FG +  PD V WT++I  Y  +G    ++ V+  M    V+PD   F  ++ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 475  CSHGGLVSEGLR-YFNLMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPI 529
             S    + +G + + N++  DY +    +H+  T L D+  + G + +AY +   M +
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 212/460 (46%), Gaps = 44/460 (9%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ GK+ H+ I+  G      L N ++ +Y KC +     ++FD+   R++VTWN++++ 
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 139  IINCGG----NVTPYFRRMLL---DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
                      NV   FR   L       +  +T   LL+ C+ +  ++V   +H + +K+
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 192  GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
            GF L+ FVS ALV++Y K G V  AR +FD++  RD VLWNVM+  Y  N   D A+  F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 252  NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
            +     G   D+     ++    +  S+   R+ H   +K                    
Sbjct: 807  SAFHRSGFFPDFSNLHCVIGGVNSDVSNN--RKRHAEQVKAY------------------ 846

Query: 312  GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
                 A ++F      N+ +WN  +  F   G    A+   + +L+ +   D VTL  IL
Sbjct: 847  -----AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 372  SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            S+           Q+HA  IK+     + + N+L+N YSK G +  A + F +  E DL+
Sbjct: 902  SAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLI 961

Query: 432  TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            +W ++I +YA + L  E+I  F  +L   ++PD      VL ACS G    EG  YF L 
Sbjct: 962  SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLG 1017

Query: 492  ISDYH-------ILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
             S  H       I+ DS   T L DL  + G + EA  LL
Sbjct: 1018 -SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 325/579 (56%), Gaps = 7/579 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+++H+H+++      + + N ++ +YVKC        LFD+M  R+ ++WN +ISG
Sbjct: 151 LVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISG 210

Query: 139 IIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                 C   +  +FR   L ++  D +T  S++ AC    D  +G +LHS++++  +  
Sbjct: 211 YFENDECLEGLELFFRMREL-SIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDG 269

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N  V ++L+ +Y   G  ++A  VF  + CRD+V W  ++S    N L D A+  +  M 
Sbjct: 270 NISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTME 329

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           + G   D  T +S++++C +LG   +G ++H L  +    L V+VA SL+DMY+K   I+
Sbjct: 330 ITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIE 389

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  +F  +  K+V+SW +++ G   N    EA+   R M+  S  P+ VTL S LS+C 
Sbjct: 390 KALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSK-PNSVTLISALSACA 448

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            +      +++HA+A+K G+     + NA+++ Y +CG +  AL  F ++ E D+  W  
Sbjct: 449 RVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNI 507

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++  YA  G     +E+F++M+   + PD + F+ +L ACS  G+V+EGL YF  M  +Y
Sbjct: 508 LLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNY 567

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
           HI P+ +HY C+ DLLGR G L EA++ +  MPI+P     GA + AC++H  + L + A
Sbjct: 568 HITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELA 627

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A+ + + +      Y L+ N+YA    W +VA++R+ M++      PGCSW+E+ G++H 
Sbjct: 628 AQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHA 687

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH-CNVLD 653
           F+S D  HPQ   +  +L   +  M+ +  +G  C+ +D
Sbjct: 688 FLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMD 726



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 212/384 (55%), Gaps = 3/384 (0%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           + L N +L ++V+     +   +F  M  R++ +WN L+ G    G        + R+L 
Sbjct: 69  VRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW 128

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             +R D  TF S+LR+C  A D+  GR +H+ +++  F ++  V +AL+ +Y KCG V  
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS 188

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR +FD++  RD + WN M+S Y  N      + +F  MR   +  D  T +S++++C  
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           LG  +LG Q+H  V++ ++D ++ V  SL+ MY   G+  +A  VF GM  ++VVSW T+
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTI 308

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G   N    +A++  + M      PDEVT+AS+LS+C SL       ++H  A + G 
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGH 368

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             ++ + N+LI+ YSKC  I  AL+ F  + + D+++WTS+I     +    E++  F K
Sbjct: 369 ILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRK 428

Query: 456 MLSHAVRPDSIAFLEVLSACSHGG 479
           M+  + +P+S+  +  LSAC+  G
Sbjct: 429 MILKS-KPNSVTLISALSACARVG 451



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 171/335 (51%), Gaps = 1/335 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEV 223
           F +L+R C        G  +   +L     L +  + +AL+ ++ + G V +A  VF  +
Sbjct: 36  FVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRM 95

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             RDL  WNV+V  Y      D A+ +++ +   G++ D +TF S++ SC        GR
Sbjct: 96  GERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGR 155

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           ++H  V++  FD+DV V  +L+ MY K G++  A  +FD M  ++ +SWN M+ G+ +N 
Sbjct: 156 EVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFEND 215

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           +  E ++L   M + S  PD +T+ S++S+C  L       Q+H+Y ++      +S+ N
Sbjct: 216 ECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYN 275

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +LI  Y   G    A   F  ++  D+V+WT+II     + L  +++E ++ M      P
Sbjct: 276 SLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMP 335

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           D +    VLSAC+  G +  G++   L     HIL
Sbjct: 336 DEVTIASVLSACASLGQLDMGMKLHELAERTGHIL 370



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 133/269 (49%), Gaps = 15/269 (5%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A  G L  G +LH    + G    + + N ++ +Y KCK  +   ++F ++  
Sbjct: 341 ASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPD 400

Query: 127 RNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +++++W ++I+G  I N       +FR+M+L + + + +T  S L AC +   +  G+ +
Sbjct: 401 KDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEI 459

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  LK G G + F+ +A++DLY +CG +  A   F+ +  +D+  WN++++ YA    G
Sbjct: 460 HAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKG 518

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
              + +F  M    +  D  TF SL+ +C     S+ G    GL   Q   ++  +  +L
Sbjct: 519 AMVMELFKRMVESEINPDDVTFISLLCAC-----SRSGMVTEGLEYFQRMKVNYHITPNL 573

Query: 305 ------VDMYAKNGNIDDACRVFDGMTAK 327
                 VD+  + G +++A    + M  K
Sbjct: 574 KHYACVVDLLGRAGKLNEAHEFIERMPIK 602


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 314/553 (56%), Gaps = 6/553 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +K  ++   ++ G+ LH   +     + L + N +L +Y+ C   ++  K+FD M+
Sbjct: 125 YPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMK 184

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++V+WNT+I+G    G   T    F +M+   V +D  +  S+L AC    ++EVGRR
Sbjct: 185 EKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRR 244

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  + +   G    VS+ALVD+Y KCG +++AR VFD ++ RD+V W  M++ Y LN  
Sbjct: 245 VHGLVEEKVLGKK-IVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGD 303

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+++F +M++EG++ +  T + ++ +C +L + K GR +HG V+KQ    +V V TS
Sbjct: 304 AKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETS 363

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK   +  +  VF   + K  V WN ++ G   N    EA+ L + ML      +
Sbjct: 364 LIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEIN 423

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  S+L + G L+       +++Y +++G  + + +  +LI+ YSKCGS+  A + F 
Sbjct: 424 AATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFN 483

Query: 424 S--VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           +  V   D+  W+ II  Y  HG  + ++ +F++M+   V+P+ + F  VL +CSH G+V
Sbjct: 484 TIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMV 543

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            +GL  F  M+ D+  +P+ +HYTC+ DLLGR G + EAYDL+ +MP  P     GA +G
Sbjct: 544 DDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLG 603

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC +H ++ L + AA  L ELEP    NY L++ +YA+   W D   +R+ M D    K 
Sbjct: 604 ACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKA 663

Query: 602 PGCSWIEIAGEIH 614
           P  S IE AG ++
Sbjct: 664 PAHSLIE-AGTVN 675



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 251/473 (53%), Gaps = 16/473 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK       L   KQLH+H++  GL + + +++ ++  Y  C    +  KLFDE+R
Sbjct: 24  YQSLLKHYGAAQSLTSTKQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNARKLFDELR 82

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL-------DHITFNSLLRACVQADDI 178
            R  + +N +I   I  G     YF  M +    L       D+ T+  +++AC +   +
Sbjct: 83  QRGTLLYNFMIKMYIAKG----DYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLV 138

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           E GR LH   L   FG + FV ++L+ +Y  CG VE+AR+VFD +  + +V WN M++ Y
Sbjct: 139 EYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGY 198

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   + A+ VFN M   G++ D  +  S++ +CG L   ++GR++HGLV ++     +
Sbjct: 199 FKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKI 258

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V+ +LVDMYAK G++D+A  VFD M  ++VVSW +M+ G+  NGD + A+ L + M   
Sbjct: 259 -VSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIE 317

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              P+ VT+A IL +C SL+   + R +H + +K  + + +++E +LI+ Y+KC  +  +
Sbjct: 318 GLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLS 377

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F        V W +++     + L+ E+I +F+KML   V  ++     +L A  +G
Sbjct: 378 FSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPA--YG 435

Query: 479 GLVS-EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
            L   + +   N  +     + + +  T L D+  + G L  A+ +  ++P++
Sbjct: 436 ILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVD 488



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 2/126 (1%)

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P      S+L   G+      T+Q+HA+ I +G+ + + I + L+  Y+ CG +  A 
Sbjct: 17  LAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNAR 75

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHG 478
           + F  +++   + +  +I  Y   G   E+++VF +ML S    PD+  +  V+ ACS  
Sbjct: 76  KLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSEL 135

Query: 479 GLVSEG 484
            LV  G
Sbjct: 136 LLVEYG 141


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 333/626 (53%), Gaps = 50/626 (7%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           + LH H  K G    L+  N +L +YVK    D   KLFDE+  +N  TW  LISG    
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 143 GGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G+   V   FR M  D    +  T +S+L+ C + ++I+ G+ +H++IL+ G G +  +
Sbjct: 112 AGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVL 171

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY--------------------- 238
            ++++DLY KC   E A   F+ ++ +D+V WN+M+  Y                     
Sbjct: 172 ENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDV 231

Query: 239 -ALNCLGDGAIAV-FNLMRLE--------GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
            + N + DG I   +  + LE        G +    TFS  +    +L   ++GRQ+HG 
Sbjct: 232 VSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGR 291

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD------------GMTAKN----VVSW 332
           V+    + D  + +SLV+MY K G +D A  +              G+T K     +VSW
Sbjct: 292 VLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSW 351

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           ++MV G+  NG   + +K  R M+      D  T+A+I+S+C +  I    +Q+HAY  K
Sbjct: 352 SSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQK 411

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G++    + ++LI+ YSK GS+  AL  F  +KEP++V WTS+I   A HG  KE+I +
Sbjct: 412 IGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISL 471

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           FE ML+  + P+ + F+ VL+ACSH GL+ EG RYF +M   YHI P+ EHYT + +L G
Sbjct: 472 FEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYG 531

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572
           R G L+EA + +    I   +    +F+ +C++H +  + K  +E LL+  PS P  Y L
Sbjct: 532 RAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYIL 591

Query: 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           +SN+ +S   W + A +R +M      K PG SW+++  +IH+F   DRSHPQ   +Y+ 
Sbjct: 592 LSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSY 651

Query: 633 LCTVFGLMEENNVSGHCNVLDKEMDE 658
           L ++ G ++E   S    ++ ++++E
Sbjct: 652 LDSLIGRLKEIGYSLDAKLVMQDVEE 677



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 220/473 (46%), Gaps = 72/473 (15%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD----------- 115
           S  LK  ++   +Q GK +H+ I++ G+   + L+N +L +Y+KCK F+           
Sbjct: 138 SSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIE 197

Query: 116 -----------------DMEK---LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLL 155
                            D+EK   +F     +++V+WNT+I G+I CG      + R+ L
Sbjct: 198 KDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCG------YERLAL 251

Query: 156 DNV--------RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
           + +            +TF+  L        +EVGR+LH  +L  G   + ++ S+LV++Y
Sbjct: 252 EQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMY 311

Query: 208 GKCGFVEDARRVFDE------------VLCRD----LVLWNVMVSCYALNCLGDGAIAVF 251
           GKCG ++ A  +  +            V C++    +V W+ MVS Y  N   +  +  F
Sbjct: 312 GKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTF 371

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M  E +  D  T ++++++C   G  + G+QIH  + K    +D  V +SL+DMY+K+
Sbjct: 372 RSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKS 431

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G++DDA  +F+ +   NVV W +M+ G   +G G+EA+ L   ML     P+EVT   +L
Sbjct: 432 GSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVL 491

Query: 372 SSC---GSLSISCETRQV--HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ-CFGSV 425
           ++C   G +   C   ++    Y I   V+ + S    ++N Y + G +  A    F + 
Sbjct: 492 NACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTS----MVNLYGRAGHLIEAKNFIFENS 547

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-PDSIAFLEVLSACSH 477
                  W S + +   H        V E +L  A   PD+   L  + + +H
Sbjct: 548 ISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNH 600



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 152/291 (52%), Gaps = 20/291 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL + +    ++ G+QLH  ++  GL +   +++ ++ +Y KC   D    +  ++ 
Sbjct: 269 FSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVP 328

Query: 126 VR----------------NIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNS 167
           +                  +V+W++++SG +  G   +    FR M+ + + +D  T  +
Sbjct: 329 LNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVAT 388

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           ++ AC  A  +E G+++H++I K+G  ++ +V S+L+D+Y K G ++DA  +F+++   +
Sbjct: 389 IISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPN 448

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIH 286
           +VLW  M+S  AL+  G  AI++F  M   G+  +  TF  ++N+C  +G  + G R   
Sbjct: 449 VVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFR 508

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR-VFDGMTAKNVVSWNTMV 336
            +      + +V   TS+V++Y + G++ +A   +F+   +     W + +
Sbjct: 509 MMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFL 559



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S L S  S+      R +H +  K G    L+  N L+  Y K  ++  A + F  +   
Sbjct: 37  SFLHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHK 96

Query: 429 DLVTWTSIIGAYAFHGLSKESI-EVFEKMLSHAVRPDSIAFLEVLSACS 476
           +  TWT +I  +A    S E +  +F +M +    P+      VL  CS
Sbjct: 97  NTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCS 145


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 309/558 (55%), Gaps = 19/558 (3%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H H+MK G  +   + + +++VY KC   +D  ++FD M  RN+V W TL+ G +    
Sbjct: 89  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQ--- 145

Query: 145 NVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           N  P      F+ ML         T +++L AC     +++G + H++I+K     +  V
Sbjct: 146 NSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASV 205

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            SAL  LY KCG +EDA + F  +  ++++ W   VS  A N      + +F  M    +
Sbjct: 206 GSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDI 265

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K + FT +S ++ C  + S +LG Q++ L IK  ++ ++ V  SL+ +Y K+G I +A R
Sbjct: 266 KPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHR 325

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGD-----------GREAVKLLRDMLQGSFCPDEVTLA 368
           +F+ M   ++V+WN M+ G  Q  +           G EA+KL   +      PD  TL+
Sbjct: 326 LFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLS 385

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+LS C  +    +  Q+HA  IK G  + + +  +LI+ YSKCGSI  A + F  +   
Sbjct: 386 SVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTR 445

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
            ++ WTS+I  ++ HG+S++++ +FE M    VRP+++ F+ VLSACSH G+VS+ L YF
Sbjct: 446 TMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYF 505

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            +M   Y I P  +HY C+ D+  R+G L +A + +  M  EP       FI  CK HG+
Sbjct: 506 EIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGN 565

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           + L  +AAE+LL L+P  P  Y L+ N+Y S   + DV+R+RKMM +    K+   SWI 
Sbjct: 566 LELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWIS 625

Query: 609 IAGEIHTFVSSDRSHPQA 626
           I  ++++F ++ ++HPQ+
Sbjct: 626 IKDKVYSFKTNGKTHPQS 643



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 174/329 (52%), Gaps = 13/329 (3%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL+ C+        + +H  ++K G   N FV S LV++Y KCG +EDARRVFD +L R+
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRN 132

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           +V W  ++  +  N     AI VF  M   G     +T S+++++C +L S KLG Q H 
Sbjct: 133 VVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHA 192

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            +IK   D D  V ++L  +Y+K G ++DA + F  +  KNV+SW + V     NG   +
Sbjct: 193 YIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVK 252

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGS-LSISCETRQVHAYAIKNGVQAFLSIENALI 406
            ++L  +M+     P+E TL S LS C   LS+   T QV++  IK G ++ L + N+L+
Sbjct: 253 GLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGT-QVYSLCIKFGYESNLRVRNSLL 311

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA-FHGLSK----------ESIEVFEK 455
             Y K G I  A + F  + +  +VTW ++I  +A    L+K          E++++F K
Sbjct: 312 YLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSK 371

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +    ++PD      VLS CS    + +G
Sbjct: 372 LNLSGMKPDLFTLSSVLSVCSRMLAIEQG 400



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 204/399 (51%), Gaps = 23/399 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G Q H++I+K  +    S+ + +  +Y KC   +D  K F  +R +N+++W + +S 
Sbjct: 184 LKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSA 243

Query: 139 IINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G  V     F  M+  +++ +  T  S L  C +   +E+G +++S  +K G+  N
Sbjct: 244 CADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESN 303

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC-----------LGD 245
             V ++L+ LY K G + +A R+F+ +    +V WN M++ +A               G 
Sbjct: 304 LRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGS 363

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F+ + L GMK D FT SS+++ C  + + + G QIH   IK  F  DV+V+TSL+
Sbjct: 364 EALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLI 423

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MY+K G+I+ A + F  M+ + +++W +M+ GF Q+G  ++A+ +  DM      P+ V
Sbjct: 424 SMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAV 483

Query: 366 TLASILSSC---GSLSISCETRQV--HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           T   +LS+C   G +S +    ++    Y IK  +  +      +++ + + G +  AL 
Sbjct: 484 TFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHY----ECMVDMFVRLGRLEQALN 539

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
               +  EP    W++ I     HG  +      E++LS
Sbjct: 540 FIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLS 578



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 1/262 (0%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +  L+  C    S    + +HG V+K     +  V + LV++YAK GN++DA RVFD M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +NVV+W T++VGF QN   + A+ + ++ML     P   TL+++L +C SL       Q
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
            HAY IK  V    S+ +AL + YSKCG +  AL+ F  ++E ++++WTS + A A +G 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
             + + +F +M++  ++P+       LS C     +  G + ++L I  +    +     
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCI-KFGYESNLRVRN 308

Query: 506 CLTDLLGRVGLLVEAYDLLASM 527
            L  L  + G +VEA+ L   M
Sbjct: 309 SLLYLYLKSGCIVEAHRLFNRM 330



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L  C       ET+ VH + +K G      + + L+N Y+KCG++  A + F ++   +
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRN 132

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +V WT+++  +  +   K +I VF++ML     P       VL ACS    +  G + F+
Sbjct: 133 VVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ-FH 191

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
             I  YH+  D+   + L  L  + G L +A    + +  E    +  + + AC  +G+
Sbjct: 192 AYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIR-EKNVISWTSAVSACADNGA 249



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 7/155 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L V ++   ++QG+Q+H+  +K G  + + +   ++ +Y KC + +   K F EM  
Sbjct: 385 SSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMST 444

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R ++ W ++I+G    G        F  M L  VR + +TF  +L AC  A    V + L
Sbjct: 445 RTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAG--MVSQAL 502

Query: 185 HSF-ILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
           + F I++  + +   +     +VD++ + G +E A
Sbjct: 503 NYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQA 537


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 298/552 (53%), Gaps = 2/552 (0%)

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYF 150
           G  + L + + ++  Y K        K+FD M  R+ V WNT++SG++  +C       F
Sbjct: 136 GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIF 195

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
             M+   +  D  T  ++L    +  D+ +G  +    +KVGF  + +V + L  LY KC
Sbjct: 196 GDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKC 255

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +E AR +F ++   DLV +N M+S Y  N   + ++ +F  + + G K +  +   L+
Sbjct: 256 GEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
                 G   L R IHG   K     +  V+T+L  +Y++   I+ A  +FD  + K++ 
Sbjct: 316 PVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLA 375

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SWN M+ G+ QNG   +A+ L ++M +    P+ VT+ SILS+C  L      + VH   
Sbjct: 376 SWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLI 435

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
            +   ++ + +  ALI+ Y+KCGSI  A + F  + E + VTW ++I  Y  HG   E++
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEAL 495

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
            +F +ML   V P  + FL VL ACSH GLV EG   F  M+ D+   P  EHY C+ DL
Sbjct: 496 NLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDL 555

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           LGR G L +A D +  MP+EP     GA +GAC +H    LA+ A++KL EL+P     Y
Sbjct: 556 LGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYY 615

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            L+SN+Y++ + + + A +R +++     K PGC+ IE+A  +H F S D+SHPQA  +Y
Sbjct: 616 VLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIY 675

Query: 631 AMLCTVFGLMEE 642
           AML  + G M E
Sbjct: 676 AMLEKLTGKMRE 687



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 140/489 (28%), Positives = 223/489 (45%), Gaps = 42/489 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q  Q H+ I+  GL N L    ++ H     KA D    LF  +   ++  +N LI  
Sbjct: 23  LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLI-- 80

Query: 139 IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK-------- 190
                       R   L+N     ++  + LR   ++  +E     ++F++         
Sbjct: 81  ------------RAFSLNNSPSSAVSLYTHLR---KSTPLEPDNFTYAFVISGASSLGLG 125

Query: 191 ---------VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
                     GFG + FV SA+V  Y K   V  AR+VFD +L RD VLWN MVS    N
Sbjct: 126 LLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              D AI +F  M   G+  D  T ++++     L    LG  I  L +K  F     V 
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML---QG 358
           T L  +Y+K G I+ A  +F  +   ++VS+N M+ G+  N +   +V+L +++L   + 
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
                 V L  +    G L +   TR +H +  K+GV +  S+  AL   YS+   I  A
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHL---TRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESA 362

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F    E  L +W ++I  YA +GL++++I +F++M    VRP+ +    +LSAC+  
Sbjct: 363 RLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQL 422

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           G +S G ++ + +I+      +    T L D+  + G + EA  L + MP E  + T  A
Sbjct: 423 GALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNA 480

Query: 539 FIGACKVHG 547
            I    +HG
Sbjct: 481 MISGYGLHG 489



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           FG L   + +H    K G+ +  S+   +  VY +    +    LFDE   +++ +WN +
Sbjct: 321 FGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAM 380

Query: 136 ISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           ISG    G        F+ M    VR + +T  S+L AC Q   + +G+ +H  I +  F
Sbjct: 381 ISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESF 440

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             N FVS+AL+D+Y KCG + +A+R+F  +  ++ V WN M+S Y L+  G  A+ +FN 
Sbjct: 441 ESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNE 500

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNG 312
           M    +     TF S++ +C   G  + G +I   +V    F+        +VD+  + G
Sbjct: 501 MLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAG 560

Query: 313 NIDDA 317
           N+D A
Sbjct: 561 NLDKA 565



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK +H  I +    + + +   ++ +Y KC +  + ++LF  M  +N 
Sbjct: 416 LSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNA 475

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL-HS 186
           VTWN +IS  G+   G      F  ML   V    +TF S+L AC  A  +  G  +  S
Sbjct: 476 VTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRS 535

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            +   GF       + +VDL G+ G ++ A
Sbjct: 536 MVHDHGFEPLPEHYACMVDLLGRAGNLDKA 565


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/611 (32%), Positives = 331/611 (54%), Gaps = 27/611 (4%)

Query: 58  STHSAHSFYSQALK-------------------VSAKFGFL---QQGKQLHSHIMKLGLC 95
           S +S+H +Y +AL+                   V   FG L   +QG+ LH   +K G+ 
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLL 155
           + + + N ++ +Y+K +   D  ++FDEM VR+ V++NT+I G +     +     RM L
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKL--EMVEESVRMFL 297

Query: 156 DNV---RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           +N+   + D +T +S+LRAC    D+ + + +++++LK GF L   V + L+D+Y KCG 
Sbjct: 298 ENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +  AR VF+ + C+D V WN ++S Y  +     A+ +F +M +   + D+ T+  L++ 
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
              L   K G+ +H   IK    +D+ V+ +L+DMYAK G + D+ ++F  M   + V+W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           NT++    + GD    +++   M +    PD  T    L  C SL+     +++H   ++
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G ++ L I NALI  YSKCG +  + + F  +   D+VTWT +I AY  +G  ++++E 
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALET 597

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F  M    + PDS+ F+ ++ ACSH GLV EGL  F  M + Y I P  EHY C+ DLL 
Sbjct: 598 FADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLS 657

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572
           R   + +A + + +MPI+P +    + + AC+  G +  A+  + +++EL P  P    L
Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSIL 717

Query: 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
            SN YA+ R W  V+ +RK ++D    K PG SWIE+   +H F S D S PQ+  +Y  
Sbjct: 718 ASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKS 777

Query: 633 LCTVFGLMEEN 643
           L  ++ LM + 
Sbjct: 778 LEILYSLMAKE 788



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 230/438 (52%), Gaps = 14/438 (3%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T  +  F S+AL  S+    L + +++H+ ++ LGL +      +++  Y   +      
Sbjct: 3   TRVSSPFISRALSSSSN---LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSL 59

Query: 119 KLFDEMR-VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            +F  +   +N+  WN++I      G       ++ ++    V  D  TF S+++AC   
Sbjct: 60  SVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGL 119

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D E+G  ++  IL +GF  + FV +ALVD+Y + G +  AR+VFDE+  RDLV WN ++
Sbjct: 120 FDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLI 179

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S Y+ +   + A+ +++ ++   +  D FT SS++ + G L   K G+ +HG  +K   +
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
             V+V   LV MY K     DA RVFD M  ++ VS+NTM+ G+ +     E+V++  + 
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN 299

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L   F PD +T++S+L +CG L      + ++ Y +K G     ++ N LI+ Y+KCG +
Sbjct: 300 LD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDM 358

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F S++  D V+W SII  Y   G   E++++F+ M+    + D I +L ++S  
Sbjct: 359 ITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVS 418

Query: 476 SH-------GGLVSEGLR 486
           +         GL S G++
Sbjct: 419 TRLADLKFGKGLHSNGIK 436



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 187/359 (52%), Gaps = 3/359 (0%)

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDL 228
           RA   + ++   RR+H+ ++ +G   + F S  L+D Y        +  VF  V   +++
Sbjct: 12  RALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNV 71

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
            LWN ++  ++ N L   A+  +  +R   +  D +TF S++ +C  L  +++G  ++  
Sbjct: 72  YLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ 131

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           ++   F+ D+ V  +LVDMY++ G +  A +VFD M  +++VSWN+++ G+  +G   EA
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           +++  ++      PD  T++S+L + G+L +  + + +H +A+K+GV + + + N L+  
Sbjct: 192 LEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAM 251

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y K      A + F  +   D V++ ++I  Y    + +ES+ +F + L    +PD +  
Sbjct: 252 YLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTV 310

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
             VL AC H   +S     +N M+    +L +S     L D+  + G ++ A D+  SM
Sbjct: 311 SSVLRACGHLRDLSLAKYIYNYMLKAGFVL-ESTVRNILIDVYAKCGDMITARDVFNSM 368



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 17/170 (10%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           ++  LSS  +L+   E R++HA  I  G+ +       LI+ YS     A +L  F  V 
Sbjct: 10  ISRALSSSSNLN---ELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVS 66

Query: 427 E-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------HGG 479
              ++  W SII A++ +GL  E++E + K+    V PD   F  V+ AC+       G 
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
           LV E        I D     D      L D+  R+GLL  A  +   MP+
Sbjct: 127 LVYE-------QILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPV 169


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 312/582 (53%), Gaps = 2/582 (0%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E+     S ++  L    +  F+  GKQ+H   +K+G  +   +   +L +Y KC+  + 
Sbjct: 235 ENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIES 294

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
            EK+F+E+  + I  WN LIS  +  G   +    +++M L  V  D  T  ++L +   
Sbjct: 295 AEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSM 354

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           A   ++GR +H+ I+K     +  + SAL+ +Y K G    A  +F  +  RD+V W  +
Sbjct: 355 AGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSV 414

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +S +  N     A+  F  M  + +K D    +S++++C  L    LG  IHG VIK   
Sbjct: 415 ISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGL 474

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            LDV VA+SL+DMY+K G  + A  +F  M  KN+V+WN+++  + +N     ++ L   
Sbjct: 475 QLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQ 534

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           +L+    PD V+  S+L++  S++   + + VH Y ++  +   L +EN LI+ Y KCG 
Sbjct: 535 VLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGL 594

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  A   F  + E +LV W S+IG Y  HG   ++IE+F++M S  ++PD + FL +LS+
Sbjct: 595 LKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSS 654

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           C+H GL+ EGL  F +M   + I P  EHY  + DL GR G L +AY  + +MP+EP   
Sbjct: 655 CNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRS 714

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
              + + +CK+H ++ L +  A KLL +EPSK  NY  + N+Y     W   A LR  M+
Sbjct: 715 IWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMK 774

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           +    K PGCSWIE+  ++  F S D S P    +Y  L ++
Sbjct: 775 EKGLKKTPGCSWIEVRNKVDVFYSGDCSSPITTEIYDTLSSL 816



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 172/604 (28%), Positives = 289/604 (47%), Gaps = 51/604 (8%)

Query: 48  QLRNSG------TIHESTHSAHSFYSQALKVSAKFGFLQ-----QGKQLHSHIMKLGLCN 96
           QL  SG      TI  S    +  + Q  +   +FG +Q     +GKQ+HS+I++  L  
Sbjct: 113 QLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEGKQIHSYIVRNMLNF 172

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLISGIINCG--GNVTPYFRRM 153
              L+  ++  Y KC    +   LF +++ R NIV WN +I G    G   N   Y+   
Sbjct: 173 DPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLA 232

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
             +NV++   +F   L AC Q + +  G+++H   +KVGF  + +V ++L+ +YGKC  +
Sbjct: 233 KTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMI 292

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           E A +VF+EV  +++ LWN ++S Y  N     A+ ++  M+L  +  D FT  +++ S 
Sbjct: 293 ESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSS 352

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
              G   LGR IH  ++K+     + + ++L+ MY+K G+ + A  +F  M  ++VV+W 
Sbjct: 353 SMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWG 412

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +++ GF QN   +EA+   R M      PD   +ASI+S+C  L        +H + IK+
Sbjct: 413 SVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS 472

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G+Q  + + ++L++ YSK G    A   F  +   +LV W SII  Y  + L   SI +F
Sbjct: 473 GLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLF 532

Query: 454 EKMLSHAVRPDSIAFLEVLSACS-----------HGGLV----SEGLRYFNLMISDY--- 495
            ++L + + PDS++F  VL+A S           HG LV       L+  N +I  Y   
Sbjct: 533 SQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKC 592

Query: 496 -------HILP--DSEHYTCLTDLLGRVG------LLVEAYDLLASMPIEPRSDTLGAFI 540
                  HI      ++      ++G  G        +E +D + S  I+P   T  + +
Sbjct: 593 GLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLL 652

Query: 541 GACKVHGSI--GLAKWAAEKL-LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
            +C   G I  GL  +   K+   +EP +  +Y  + ++Y    C  D     K M    
Sbjct: 653 SSCNHSGLIEEGLHLFEMMKMKFGIEP-RMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEP 711

Query: 598 DHKV 601
           D  +
Sbjct: 712 DRSI 715



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 243/482 (50%), Gaps = 47/482 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM- 124
           Y   LK  A    LQ GK +HS I+  GL +   + + ++++YVKC  F D  K+FD++ 
Sbjct: 56  YPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQLP 115

Query: 125 ----RVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
                V ++  WN++I G          YFR   L+      + F  +     Q+   + 
Sbjct: 116 KSGVSVDDVTIWNSIIDG----------YFRFGQLEE---GMVQFGRM-----QSSGYKE 157

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYA 239
           G+++HS+I++     + F+ +AL+D Y KCG   +AR +F ++  R ++V WNVM+  + 
Sbjct: 158 GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFG 217

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N L + ++  + L + E +K    +F+  +++CG       G+Q+H   IK  F+ D  
Sbjct: 218 ENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPY 277

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V TSL+ MY K   I+ A +VF+ +  K +  WN ++  +  NG   +A+++ + M   +
Sbjct: 278 VHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCT 337

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D  T+ ++L+S     +    R +H   +K  +Q+ ++I++AL+  YSK G    A 
Sbjct: 338 VLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYAN 397

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS--- 476
             F ++KE D+V W S+I  +  +   KE+++ F  M +  V+PDS     ++SAC+   
Sbjct: 398 SIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLE 457

Query: 477 --------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
                   HG ++  GL+  ++ ++           + L D+  + G    A ++ + MP
Sbjct: 458 KVDLGCTIHGFVIKSGLQ-LDVFVA-----------SSLLDMYSKFGFPERAGNIFSDMP 505

Query: 529 IE 530
           ++
Sbjct: 506 LK 507



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 26/333 (7%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V     T+ SLL+AC    +++ G+ +HS I+  G   + +++S+L+++Y KCG   DA 
Sbjct: 49  VYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAV 108

Query: 218 RVFDE-----VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +VFD+     V   D+ +WN ++  Y      +  +  F  M+  G K            
Sbjct: 109 KVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE----------- 157

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVS 331
                    G+QIH  +++   + D  + T+L+D Y K G   +A  +F  +  + N+V+
Sbjct: 158 ---------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVA 208

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN M+ GFG+NG    +++        +      +    LS+CG        +QVH  AI
Sbjct: 209 WNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAI 268

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           K G +    +  +L+  Y KC  I  A + F  V + ++  W ++I AY  +G + +++ 
Sbjct: 269 KVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALR 328

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++++M    V  DS   L VL++ S  GL   G
Sbjct: 329 IYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG 361



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 137/299 (45%), Gaps = 30/299 (10%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD- 322
           FT+ SL+ +C +L + + G+ IH  +I      D  + +SL+++Y K G   DA +VFD 
Sbjct: 54  FTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQ 113

Query: 323 ----GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
               G++  +V  WN+++ G+ + G   E +     M    +                  
Sbjct: 114 LPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGY------------------ 155

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSII 437
              E +Q+H+Y ++N +     +E ALI+ Y KCG    A   F  +K+  ++V W  +I
Sbjct: 156 --KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMI 213

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
           G +  +GL + S+E +    +  V+  S +F   LSAC  G  VS G +     I     
Sbjct: 214 GGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIK-VGF 272

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIGACKVHGSIGLAK 553
             D   +T L  + G+  ++  A  +   +P   IE  +  + A++G    + ++ + K
Sbjct: 273 EDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYK 331



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           R+ ++ L+   +        T  S+L +C SLS     + +H+  I  G+ +   I ++L
Sbjct: 35  RQYIEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSL 94

Query: 406 INAYSKCGSIAGALQCFGSVKEP-----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           IN Y KCG+   A++ F  + +      D+  W SII  Y   G  +E +  F +M S  
Sbjct: 95  INIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSG 154

Query: 461 VR 462
            +
Sbjct: 155 YK 156


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 185/499 (37%), Positives = 286/499 (57%), Gaps = 6/499 (1%)

Query: 133 NTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           N +I  I     N++P  +   ML+  +  D  T   +L+A      I  G+++H+  +K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 191 VGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
            G  G N +VS+ L+ LY  CG + D ++VFDE   RDLV W  ++  +    L   A+ 
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLVATSLVDM 307
            F  M    ++ D  T   ++++C  LG   LG+++H   I+   D+  DV V  +L+DM
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY-IRHYIDMKADVFVGNALLDM 257

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K  +++ A +VFD M  KNVV+WN M+ G    G  REA+   R M      PDEVTL
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
             +L+SC +L +    + VHAY  +N + A   + NAL++ Y+KCGSI  A + F S+K 
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKR 377

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D+ ++T++I   A HG +  + +VF +M    + P+ + FL +L ACSHGGLV+EG +Y
Sbjct: 378 RDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKY 437

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M   Y + P +EHY C+ DLLGR GL+ EA +++  M I P     GA +GAC++HG
Sbjct: 438 FFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHG 497

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           ++ + +   +KL EL+P +   Y L++N+Y+S   W D  ++RK M++    K PGCS I
Sbjct: 498 NVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLI 557

Query: 608 EIAGEIHTFVSSDRSHPQA 626
           E+ G +H F   D+SHP++
Sbjct: 558 EVDGVVHEFRKGDKSHPRS 576



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 222/473 (46%), Gaps = 41/473 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           LK  A    +++G+Q+H+  +K G+    + + N ++ +Y  C +  D++K+FDE   R+
Sbjct: 117 LKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRD 176

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+W TLI      G        F  M    +R D  T   +L AC    D+ +G+++HS
Sbjct: 177 LVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHS 236

Query: 187 FILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +I   +    + FV +AL+D+Y KC  +  A +VFDE+  +++V WN M+S  A      
Sbjct: 237 YIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYR 296

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+  F +M+ +G+K D  T   ++NSC  LG  ++G+ +H  + +     D  V  +L+
Sbjct: 297 EALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALL 356

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMYAK G+ID+A RVF+ M  ++V S+  M+ G   +G+   A ++  +M +    P+EV
Sbjct: 357 DMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEV 416

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T   +L +C            H   +  G + F  + +                      
Sbjct: 417 TFLGLLMACS-----------HGGLVAEGKKYFFQMSDKY-------------------K 446

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
             P    +  +I      GL KE+ E+  KM    +RPD  A   +L AC   G V  G 
Sbjct: 447 LRPQAEHYGCMIDLLGRAGLVKEAEEIIHKM---EIRPDVFACGALLGACRIHGNVDIGE 503

Query: 486 RYFNLMISDYHILPDSE-HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
              ++M     + PD E  Y  +T+L   V    +A  +  +M  +    T G
Sbjct: 504 ---SVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPG 553



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 171/340 (50%), Gaps = 13/340 (3%)

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           L L N ++   + N +    +   N M + G++ D FT   ++ +   +   + G+QIH 
Sbjct: 75  LSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHA 134

Query: 288 LVIKQSF-DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             IK      +V V+ +L+ +Y+  G+I D  +VFD    +++VSW T++  F + G   
Sbjct: 135 RSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYS 194

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV--QAFLSIENA 404
            AV+   +M       D  TL  +LS+C +L      ++VH+Y I++ +  +A + + NA
Sbjct: 195 RAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY-IRHYIDMKADVFVGNA 253

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y KC  +  A + F  +   ++VTW ++I   A+ G  +E+++ F  M    V+PD
Sbjct: 254 LLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPD 313

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            +  + VL++C++ G++  G ++ +  +   HIL D      L D+  + G + EA+ + 
Sbjct: 314 EVTLVGVLNSCANLGVLEIG-KWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVF 372

Query: 525 ASMPIEPRSD--TLGAFIGACKVHGSIGLAKWAAEKLLEL 562
            SM    R D  +  A I    +HG    A WA +   E+
Sbjct: 373 ESM---KRRDVYSYTAMIFGLALHGE---ANWAFQVFSEM 406


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/616 (32%), Positives = 332/616 (53%), Gaps = 7/616 (1%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +H   H  + F ++  LK+     + + G+ +H  ++K+G  +   +   ++  Y     
Sbjct: 37  LHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGC 96

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
                ++FDE+  +++V+W  +I+     +C      +F +M +   + ++ TF  +L+A
Sbjct: 97  VSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKA 156

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C+   + + G+ +H  +LK  +  + +V   L++LY +CG  +DA R F ++   D++ W
Sbjct: 157 CLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPW 216

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           + M+S +A +   + A+ +F  MR   +  + FTFSS++ +   + S  L + IHG  +K
Sbjct: 217 SFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALK 276

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                DV V+ +L+  YAK G I+ +  +F+ ++ +N VSWNT++V + Q GDG  A+ L
Sbjct: 277 AGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSL 336

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
             +ML+      EVT +SIL +C +L+      QVH    K      +++ NALI+ Y+K
Sbjct: 337 FSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAK 396

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CGSI  A   F  +   D V+W +II  Y+ HGL  E+I++F  M     +PD + F+ V
Sbjct: 397 CGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGV 456

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           LSACS+ G + EG +YF  M  DY I P  EHYTC+  L+GR G L +A   +  +P EP
Sbjct: 457 LSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP 516

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
                 A +GAC +H  + L + +A+++LELEP    ++ L+SN+YA  R W +VA +RK
Sbjct: 517 SVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRK 576

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCN- 650
            M+     K PG SWIE  G +H F  +D SH     +  ML  +     +   S   N 
Sbjct: 577 HMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNA 636

Query: 651 -VLDKEMDECT--LWL 663
            +LD E DE    LWL
Sbjct: 637 VLLDVEDDEKERLLWL 652



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 206/369 (55%), Gaps = 2/369 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FDEM  RN V++ TLI G       +  +  F R+  +   L+   F ++L+  V  + 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
            E+GR +H  +LKVG+G N F+ +AL+D Y   G V  AR VFDE+  +D+V W  M++ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           YA N     A+  F+ MR+ G K + FTF+ ++ +C  L +   G+ +H  V+K +++ D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + V   L+++Y + G+ DDA R F  M   +V+ W+ M+  F Q+G   +A+++   M +
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P++ T +S+L +   +     ++ +H +A+K G+   + + NAL+  Y+KCG I  
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           +++ F ++ + + V+W +II +Y   G  + ++ +F  ML + V+   + +  +L AC+ 
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 478 GGLVSEGLR 486
              +  GL+
Sbjct: 362 LAALELGLQ 370


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 305/542 (56%), Gaps = 2/542 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           LH   +K GL   + + N +L  Y K        ++F EM  ++ VT+N ++ G    G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 144 -GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
                  F  M    +   H TF+S+L        + +G ++H+ +L+    LN FV+++
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D Y KC  ++D RR+FDE+  RD V +NV+++ YA N      + +F  M+  G    
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
              ++++++  G+L    +G+QIH  ++      + L+  +L+DMY+K G +D A   F 
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
             + K+ +SW  ++ G+ QNG   EA++L  DM +    PD  T +SI+ +  SL++   
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            RQ+H+Y I++G ++ +   + L++ Y+KCG +  AL+ F  + E + ++W ++I AYA 
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +G +K +I++FE ML     PDS+ FL VL+ACSH GL  E ++YF+LM   Y I P  E
Sbjct: 517 YGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HY C+ D LGRVG   +   +L  MP +       + + +C++HG+  LA+ AA+KL  +
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM 636

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           EP+    Y ++SN+YA    W D A ++K+MRD    K  G SW+EI  +I++F S+D +
Sbjct: 637 EPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLT 696

Query: 623 HP 624
            P
Sbjct: 697 SP 698



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 198/399 (49%), Gaps = 26/399 (6%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  +S  L V+A    L  G Q+H+ +++      + + N +L  Y KC   DDM +L
Sbjct: 234 ATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 293

Query: 121 FDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FDEM  R+ V++N +I+      C   V   FR M         + + ++L       D+
Sbjct: 294 FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+++H+ ++ +G      + +AL+D+Y KCG ++ A+  F     +  + W  +++ Y
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 413

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   + A+ +F+ MR  G++ D  TFSS++ +  +L    LGRQ+H  +I+  +   V
Sbjct: 414 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSV 473

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
              + LVDMYAK G +D+A R FD M  +N +SWN ++  +   G+ + A+K+   ML  
Sbjct: 474 FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHC 533

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCG 413
            F PD VT  S+L++C    ++ E  +      H Y+I    + +  + + L        
Sbjct: 534 GFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL-------- 585

Query: 414 SIAGALQCFGSVK--------EPDLVTWTSIIGAYAFHG 444
              G + CF  V+        + D + WTSI+ +   HG
Sbjct: 586 ---GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG 621



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 126/261 (48%), Gaps = 5/261 (1%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N F  + ++  Y   G +  A+ +F     R+   W +M+  +A       A+++F  M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+  D  T ++++N  G    S     +H   IK   D  V V  +L+D Y K+G + 
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTVPS-----LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A RVF  M  K+ V++N M++G  + G   +A++L   M +        T +SIL+   
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            ++      QVHA  +++     + + N+L++ YSKC  +    + F  + E D V++  
Sbjct: 248 GMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNV 307

Query: 436 IIGAYAFHGLSKESIEVFEKM 456
           II AYA++  +   + +F +M
Sbjct: 308 IIAAYAWNQCAATVLRLFREM 328



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K  F L+++++      Y+ +G++  A  +F     +N  +W  M+      G   +A+ 
Sbjct: 72  KNIFSLNLILSA-----YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALS 126

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L R ML     PD VT+ ++L+  G     C    +H +AIK G+   + + N L++AY 
Sbjct: 127 LFRAMLGEGVIPDRVTVTTVLNLPG-----CTVPSLHPFAIKFGLDTHVFVCNTLLDAYC 181

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G +A A + F  + + D VT+ +++   +  GL  +++++F  M    +      F  
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSS 241

Query: 471 VLSACS 476
           +L+  +
Sbjct: 242 ILTVAA 247



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 57/309 (18%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T  + N Q  +   L S +R +G          + +S  +K S+    +  G+QLHS+++
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGL-----RPDRATFSSIIKASSSLAMIGLGRQLHSYLI 465

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + G  + +   + ++ +Y KC   D+  + FDEM  RN ++WN +IS   + G   N   
Sbjct: 466 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 525

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQ---ADDIEVGRRLHSFILKVGFGLNCFVS--SAL 203
            F  ML      D +TF S+L AC     AD  E  +  H  ++K  + ++ +    + +
Sbjct: 526 MFEGMLHCGFNPDSVTFLSVLAACSHNGLAD--ECMKYFH--LMKHQYSISPWKEHYACV 581

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D  G+ G     +++  E+                                    K D 
Sbjct: 582 IDTLGRVGCFSQVQKMLVEM----------------------------------PFKADP 607

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV---DMYAKNGNIDDACRV 320
             ++S+++SC   G+ +L R    +   + F ++   AT  V   ++YA+ G  +DA  V
Sbjct: 608 IIWTSILHSCRIHGNQELAR----VAADKLFGMEPTDATPYVILSNIYARAGQWEDAACV 663

Query: 321 FDGMTAKNV 329
              M  + V
Sbjct: 664 KKIMRDRGV 672


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/476 (36%), Positives = 272/476 (57%), Gaps = 1/476 (0%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L+AC    D+ +GR +H   +K          + L+D+Y KCG ++ A  VFD +  R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
            +V W  +++ YA   L D AI +F+ M  EG+  D FT ++++++C   GS + G+ +H
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             + +     ++ V  +L+DMYAK G+++DA  VF  M  K+++SWNTM+ G+ +N    
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA+ L  DM+     PD  TLA IL +C SL+     ++VH + ++NG  +   + NAL+
Sbjct: 183 EALSLFGDMVL-EMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALV 241

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KCG    A   F  +   DL+TWT +I  Y  HG    +I  F +M    + PD +
Sbjct: 242 DMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEV 301

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
           +F+ +L ACSH GL+ EG R+FN+M  + ++ P  EHY C+ DLL R G L  AY  + S
Sbjct: 302 SFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKS 361

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           MPIEP +   GA +  C++H  + LA+  AE + ELEP     Y L++N YA    W +V
Sbjct: 362 MPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEV 421

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            +LR+ +      K PGCSWIE+  ++H F++ + SHPQA  +  +L  +   M+E
Sbjct: 422 KKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKE 477



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 217/451 (48%), Gaps = 26/451 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  A  G +  G+ +H   +K  +  K +  N +L +Y KC   D    +FD M VR +
Sbjct: 5   LQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTV 64

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VTW +LI+     G        F  M  + V  D  T  ++L AC     +E G+ +H++
Sbjct: 65  VTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNY 124

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I +     N FV +AL+D+Y KCG +EDA  VF E+  +D++ WN M+  Y+ N L + A
Sbjct: 125 IRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEA 184

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +++F  M LE MK D  T + ++ +C +L S   G+++HG +++  F  D  VA +LVDM
Sbjct: 185 LSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDM 243

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K G    A  +FD +  K++++W  M+ G+G +G G  A+    +M Q    PDEV+ 
Sbjct: 244 YVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSF 303

Query: 368 ASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            SIL +C    +  E  R  +    +  V+  L     +++  ++ G +A A +   S+ 
Sbjct: 304 ISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMP 363

Query: 427 -EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            EPD   W +++     H      +++ EK+  H                    L  E  
Sbjct: 364 IEPDATIWGALLSGCRIH----HDVKLAEKVAEHVFE-----------------LEPENT 402

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
            Y+ L+ + Y      E    L   +GR GL
Sbjct: 403 GYYVLLANTYAEAEKWEEVKKLRQKIGRRGL 433



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + SIL +C +       R VH   +K  V    +  N L++ Y+KCG + GA+  F  + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
              +VTWTS+I AYA  GLS E+I +F +M    V PD      VL AC+  G +  G  
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 487 YFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLASMPIE 530
             N +  +      S  + C  L D+  + G + +A  +   MP++
Sbjct: 121 VHNYIRENDM---QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK 163


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 305/542 (56%), Gaps = 2/542 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           LH   +K GL   + + N +L  Y K        ++F EM  ++ VT+N ++ G    G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 144 -GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
                  F  M    +   H TF+S+L        + +G ++H+ +L+    LN FV+++
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D Y KC  ++D RR+FDE+  RD V +NV+++ YA N      + +F  M+  G    
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
              ++++++  G+L    +G+QIH  ++      + L+  +L+DMY+K G +D A   F 
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
             + K+ +SW  ++ G+ QNG   EA++L  DM +    PD  T +SI+ +  SL++   
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            RQ+H+Y I++G ++ +   + L++ Y+KCG +  AL+ F  + E + ++W ++I AYA 
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +G +K +I++FE ML     PDS+ FL VL+ACSH GL  E ++YF+LM   Y I P  E
Sbjct: 517 YGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HY C+ D LGRVG   +   +L  MP +       + + +C++HG+  LA+ AA+KL  +
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM 636

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           EP+    Y ++SN+YA    W D A ++K+MRD    K  G SW+EI  +I++F S+D +
Sbjct: 637 EPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLT 696

Query: 623 HP 624
            P
Sbjct: 697 SP 698



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 198/399 (49%), Gaps = 26/399 (6%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  +S  L V+A    L  G Q+H+ +++      + + N +L  Y KC   DDM +L
Sbjct: 234 ATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 293

Query: 121 FDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FDEM  R+ V++N +I+      C   V   FR M         + + ++L       D+
Sbjct: 294 FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+++H+ ++ +G      + +AL+D+Y KCG ++ A+  F     +  + W  +++ Y
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 413

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   + A+ +F+ MR  G++ D  TFSS++ +  +L    LGRQ+H  +I+  +   V
Sbjct: 414 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSV 473

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
              + LVDMYAK G +D+A R FD M  +N +SWN ++  +   G+ + A+K+   ML  
Sbjct: 474 FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHC 533

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCG 413
            F PD VT  S+L++C    ++ E  +      H Y+I    + +  + + L        
Sbjct: 534 GFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL-------- 585

Query: 414 SIAGALQCFGSVK--------EPDLVTWTSIIGAYAFHG 444
              G + CF  V+        + D + WTSI+ +   HG
Sbjct: 586 ---GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG 621



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 126/261 (48%), Gaps = 5/261 (1%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N F  + ++  Y   G +  A+ +F     R+   W +M+  +A       A+++F  M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+  D  T ++++N  G    S     +H   IK   D  V V  +L+D Y K+G + 
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTVPS-----LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A RVF  M  K+ V++N M++G  + G   +A++L   M +        T +SIL+   
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            ++      QVHA  +++     + + N+L++ YSKC  +    + F  + E D V++  
Sbjct: 248 GMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNV 307

Query: 436 IIGAYAFHGLSKESIEVFEKM 456
           II AYA++  +   + +F +M
Sbjct: 308 IIAAYAWNQCAATVLRLFREM 328



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K  F L+++++      Y+ +G++  A  +F     +N  +W  M+      G   +A+ 
Sbjct: 72  KNIFSLNLILSA-----YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALS 126

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L R ML     PD VT+ ++L+  G     C    +H +AIK G+   + + N L++AY 
Sbjct: 127 LFRAMLGEGVIPDRVTVTTVLNLPG-----CTVPSLHPFAIKFGLDTHVFVCNTLLDAYC 181

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G +A A + F  + + D VT+ +++   +  GL  +++++F  M    +      F  
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSS 241

Query: 471 VLSACS 476
           +L+  +
Sbjct: 242 ILTVAA 247



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 57/309 (18%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T  + N Q  +   L S +R +G          + +S  +K S+    +  G+QLHS+++
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGL-----RPDRATFSSIIKASSSLAMIGLGRQLHSYLI 465

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + G  + +   + ++ +Y KC   D+  + FDEM  RN ++WN +IS   + G   N   
Sbjct: 466 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 525

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQ---ADDIEVGRRLHSFILKVGFGLNCFVS--SAL 203
            F  ML      D +TF S+L AC     AD  E  +  H  ++K  + ++ +    + +
Sbjct: 526 MFEGMLHCGFNPDSVTFLSVLAACSHNGLAD--ECMKYFH--LMKHQYSISPWKEHYACV 581

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D  G+ G     +++  E+                                    K D 
Sbjct: 582 IDTLGRVGCFSQVQKMLVEM----------------------------------PFKADP 607

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV---DMYAKNGNIDDACRV 320
             ++S+++SC   G+ +L R    +   + F ++   AT  V   ++YA+ G  +DA  V
Sbjct: 608 IIWTSILHSCRIHGNQELAR----VAADKLFGMEPTDATPYVILSNIYARAGQWEDAACV 663

Query: 321 FDGMTAKNV 329
              M  + V
Sbjct: 664 KKIMRDRGV 672


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 319/576 (55%), Gaps = 4/576 (0%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           AL     F + + GK++H+ ++K     ++L + N ++ +Y +C      E++  +M   
Sbjct: 290 ALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNA 349

Query: 128 NIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++VTWN+LI G +          +F  M+    + D ++  S++ A  +  ++  G  LH
Sbjct: 350 DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELH 409

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           ++++K G+  N  V + L+D+Y KC       R F  +  +DL+ W  +++ YA N    
Sbjct: 410 AYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHV 469

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  +  + M+ D     S++ +   L S  + ++IH  ++++   LD ++   LV
Sbjct: 470 EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELV 528

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K  N+  A RVF+ +  K+VVSW +M+     NG+  EAV+L R M++     D V
Sbjct: 529 DVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 588

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            L  ILS+  SLS   + R++H Y ++ G     SI  A+++ Y+ CG +  A   F  +
Sbjct: 589 ALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI 648

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +   L+ +TS+I AY  HG  K ++E+F+KM    V PD I+FL +L ACSH GL+ EG 
Sbjct: 649 ERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 708

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            +  +M  +Y + P  EHY CL D+LGR   +VEA++ +  M  EP ++   A + AC+ 
Sbjct: 709 GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRS 768

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H    + + AA++LLELEP  P N  LVSNV+A +  W DV ++R  M+ +   K PGCS
Sbjct: 769 HSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCS 828

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           WIE+ G++H F + D+SHP++  +Y  L  V   +E
Sbjct: 829 WIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLE 864



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 225/416 (54%), Gaps = 5/416 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEM 124
           ++  L++  K   + QG+QLHS I K     +L  L  +++ +Y KC + DD EK+FDEM
Sbjct: 83  FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEM 142

Query: 125 RVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R    WNT+I   ++ G   +    +  M ++ V L   +F +LL+AC +  DI  G 
Sbjct: 143 PDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGS 202

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALN 241
            LHS ++K+G+    F+ +ALV +Y K   +  ARR+FD    + D VLWN ++S Y+ +
Sbjct: 203 ELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTS 262

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLV 300
                 + +F  M + G   + +T  S + +C     +KLG++IH  V+K S    ++ V
Sbjct: 263 GKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYV 322

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L+ MY + G +  A R+   M   +VV+WN+++ G+ QN   +EA++   DM+    
Sbjct: 323 CNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGH 382

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             DEV++ SI+++ G LS      ++HAY IK+G  + L + N LI+ YSKC       +
Sbjct: 383 KSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGR 442

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            F  + + DL++WT++I  YA +    E++E+F  +    +  D +    +L A S
Sbjct: 443 AFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/572 (27%), Positives = 272/572 (47%), Gaps = 44/572 (7%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +   LK  AK   ++ G +LHS ++KLG  +   + N ++ +Y K        +LFD 
Sbjct: 183 SSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDG 242

Query: 124 MRVR-NIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            + + + V WN+++S     G ++     FR M +     +  T  S L AC      ++
Sbjct: 243 FQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKL 302

Query: 181 GRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           G+ +H+ +LK        +V +AL+ +Y +CG +  A R+  ++   D+V WN ++  Y 
Sbjct: 303 GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYV 362

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N +   A+  F+ M   G K D  + +S++ + G L +   G ++H  VIK  +D ++ 
Sbjct: 363 QNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQ 422

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +L+DMY+K        R F  M  K+++SW T++ G+ QN    EA++L RD+ +  
Sbjct: 423 VGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKR 482

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              DE+ L SIL +   L      +++H + ++ G+   + I+N L++ Y KC ++  A 
Sbjct: 483 MEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYAT 541

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F S+K  D+V+WTS+I + A +G   E++E+F +M+   +  DS+A L +LSA +   
Sbjct: 542 RVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLS 601

Query: 480 LVSEGLRYFNLMISDYHILPDS------EHYTCLTDL---------LGRVGLL------- 517
            +++G      ++     L  S      + Y C  DL         + R GLL       
Sbjct: 602 ALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMIN 661

Query: 518 -----------VEAYDLLASMPIEPRSDTLGAFIGACKVHGSI----GLAKWAAEKLLEL 562
                      VE +D +    + P   +  A + AC   G +    G  K   E   EL
Sbjct: 662 AYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLK-IMEHEYEL 720

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
           EP  P +Y  + ++     C  +     KMM+
Sbjct: 721 EPW-PEHYVCLVDMLGRANCVVEAFEFVKMMK 751



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 180/335 (53%), Gaps = 5/335 (1%)

Query: 144 GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV--GFGLNCFVSS 201
           G +T  F+R+ +         F  +L  C +   +  GR+LHS I K    F L+ F++ 
Sbjct: 62  GVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAG 120

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            LV +YGKCG ++DA +VFDE+  R    WN M+  Y  N     A+A++  MR+EG+  
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
              +F +L+ +C  L   + G ++H L++K  +     +  +LV MYAKN ++  A R+F
Sbjct: 181 GLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLF 240

Query: 322 DGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           DG   K + V WN+++  +  +G   E ++L R+M      P+  T+ S L++C   S +
Sbjct: 241 DGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYA 300

Query: 381 CETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
              +++HA  +K+   +  L + NALI  Y++CG +  A +    +   D+VTW S+I  
Sbjct: 301 KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKG 360

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           Y  + + KE++E F  M++   + D ++   +++A
Sbjct: 361 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 10/301 (3%)

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           V V    L C        F  + +         F+ ++  CG   +   GRQ+H  + K 
Sbjct: 50  VQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKT 109

Query: 293 --SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
             SF+LD L A  LV MY K G++DDA +VFD M  +   +WNTM+  +  NG+   A+ 
Sbjct: 110 FPSFELDFL-AGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALA 168

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L  +M          +  ++L +C  L       ++H+  +K G  +   I NAL++ Y+
Sbjct: 169 LYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYA 228

Query: 411 KCGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           K   ++ A + F   +E  D V W SI+ +Y+  G S E++E+F +M      P+S   +
Sbjct: 229 KNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIV 288

Query: 470 EVLSACSHGGLVSEGLR-YFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDLLAS 526
             L+AC        G   + +++ S  H    SE Y C  L  +  R G + +A  +L  
Sbjct: 289 SALTACDGFSYAKLGKEIHASVLKSSTH---SSELYVCNALIAMYTRCGKMPQAERILRQ 345

Query: 527 M 527
           M
Sbjct: 346 M 346


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/629 (31%), Positives = 339/629 (53%), Gaps = 16/629 (2%)

Query: 10  IFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSF-YSQ 68
           + T++ + P+S+ +          + N +  D   L S +  SGT      +A  F    
Sbjct: 92  LITMYGRNPVSWASVI-----AAHVQNGRAGDALGLFSSMLRSGT------AADQFALGS 140

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A++   + G +  G+Q+H+H +K    + L +QN ++ +Y K    DD   LF+ ++ ++
Sbjct: 141 AVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKD 200

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLDNVR-LDHITFNSLLRACVQADDIEVGRRLH 185
           +++W ++I+G    G  +     FR M+++     +   F S  RAC      E G ++H
Sbjct: 201 LISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIH 260

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +K     + +V  +L D+Y +C  ++ AR  F  +   DLV WN +V+ Y++  L  
Sbjct: 261 GLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLS 320

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F+ MR  G++ D  T   L+ +C    +   GR IH  ++K   D DV V  SL+
Sbjct: 321 EALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLL 380

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MYA+  ++  A  VF  +  ++VV+WN+++    Q+    E +KL   + +     D +
Sbjct: 381 SMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRI 440

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           +L ++LS+   L      +QVHAYA K G+     + N LI+ Y+KCGS+  A++ F  +
Sbjct: 441 SLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 500

Query: 426 -KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               D+ +W+S+I  YA  G +KE+ ++F +M S  +RP+ + F+ VL+ACS  G V+EG
Sbjct: 501 GNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG 560

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             Y+++M  +Y I+P  EH +C+ DLL R G L EA + +  MP EP        + A K
Sbjct: 561 CYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASK 620

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H  + + K AAE +L ++PS    Y L+ N+YA+   W + ARL+K MR +   K PG 
Sbjct: 621 MHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGK 680

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SW+++ GE+  F+  DRSHP++  +YAML
Sbjct: 681 SWVKLKGELKVFIVEDRSHPESEEIYAML 709



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 210/424 (49%), Gaps = 27/424 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIM-------KLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           Y+  +   ++   L QG+++H H++          L     L N ++ +Y          
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMY---------- 96

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
                   RN V+W ++I+  +  G  G+    F  ML      D     S +RAC +  
Sbjct: 97  -------GRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 149

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D+  GR++H+  LK   G +  V +ALV +Y K G V+D   +F+ +  +DL+ W  +++
Sbjct: 150 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 209

Query: 237 CYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
            +A       A+ VF  M +EG    + F F S   +CG +GS + G QIHGL IK   D
Sbjct: 210 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 269

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D+ V  SL DMYA+  N+D A   F  + A ++VSWN++V  +   G   EA+ L  +M
Sbjct: 270 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 329

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 PD +T+  +L +C         R +H+Y +K G+   +S+ N+L++ Y++C  +
Sbjct: 330 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 389

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           + A+  F  +K+ D+VTW SI+ A A H   +E +++F  +       D I+   VLSA 
Sbjct: 390 SSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSAS 449

Query: 476 SHGG 479
           +  G
Sbjct: 450 AELG 453



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 119/252 (47%), Gaps = 18/252 (7%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHG-LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           +++LV++C  L S   GR++H  LV   S   D  +A + V      GN          M
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTV-----LGN------HLITM 95

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             +N VSW +++    QNG   +A+ L   ML+     D+  L S + +C  L      R
Sbjct: 96  YGRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGR 155

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           QVHA+A+K+   + L ++NAL+  YSK G +      F  +K+ DL++W SII  +A  G
Sbjct: 156 QVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQG 215

Query: 445 LSKESIEVFEKML---SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
              E+++VF +M+   SH   P+   F     AC   G    G +   L I  Y +  D 
Sbjct: 216 FEMEALQVFREMIVEGSH--HPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK-YRLDRDL 272

Query: 502 EHYTCLTDLLGR 513
                L+D+  R
Sbjct: 273 YVGCSLSDMYAR 284


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 331/570 (58%), Gaps = 14/570 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN-IVTWNTLISGI 139
           QG   H +I + G    LS+QN +L +Y +   +    KLF EM VRN +V+W+ +I G 
Sbjct: 166 QGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMYFAY-KLFGEMSVRNDVVSWSVMIGGF 224

Query: 140 INCGGNVTPY--FRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +  G +   +  FR M+ +  +  D +T  S+L+AC    DI +G  +H  ++  G   +
Sbjct: 225 VQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDD 284

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV ++L+D+Y KC  V  A + F E+  ++++ WN+M+S Y LN     A+A+   M  
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG + D  T ++++        S   R +HG++I++ ++ + L+  S++D YAK   ++ 
Sbjct: 345 EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVEL 404

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VFDGM  K+VV+W+TM+ GF +NG   EA+ + + M +    P+ V++ +++ +C  
Sbjct: 405 ARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNE-EVIPNNVSIMNLMEAC-- 461

Query: 377 LSISCETRQ---VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            ++S E RQ    H  A++ G+ + ++I  ++I+ YSKCG I  +++ F  + + ++V W
Sbjct: 462 -AVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCW 520

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           +++I A+  +GL+ E++ +FEK+  +  +P+++  L +LSACSHGGL+ EGL +F  M+ 
Sbjct: 521 SAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQ 580

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP--IEPRSDTLGAFIGACKVHGSIGL 551
            + I P  EHY+C+ D+L R G   EA +L+  +P  +E  +   G  + +C+ +G+I L
Sbjct: 581 KHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISL 640

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
              AA ++L+LEP     Y L SN+YA+     D A++R++ ++     V G S + I  
Sbjct: 641 GSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINS 700

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           +   FV+ D  +P+A  +Y M+  + G+M+
Sbjct: 701 QTWRFVAGDVLNPRADEIYLMVKKLHGVMK 730



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 207/399 (51%), Gaps = 6/399 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H  ++K G  +  S+ N  +  Y+K    D  ++ FD  + ++ V+WN ++ G  +
Sbjct: 66  GTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFS 125

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G  +    +F +    + + +  +   +++A  +      G   H +I + GF     V
Sbjct: 126 NGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSV 185

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVF-NLMRLE 257
            ++L+ LY +   +  A ++F E+  R D+V W+VM+  +      +    +F N++   
Sbjct: 186 QNSLLSLYAEV-HMYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEA 244

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D  T  S++ +C  L    LG  +HGLVI +  + D+ V  SL+DMY+K  N+  A
Sbjct: 245 GIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSA 304

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            + F  +  KN++SWN M+  +  N    EA+ LL  M++     DEVTLA++L      
Sbjct: 305 FKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHF 364

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
             S + R VH   I+ G ++   + N++I+AY+KC  +  A   F  + + D+V W+++I
Sbjct: 365 LDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMI 424

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             +A +G   E+I VF++M +  V P++++ + ++ AC+
Sbjct: 425 AGFARNGKPDEAISVFKQM-NEEVIPNNVSIMNLMEACA 462



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 198/417 (47%), Gaps = 34/417 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK       +  G  +H  ++  GL + L + N ++ +Y KC       K F E+  +NI
Sbjct: 257 LKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNI 316

Query: 130 VTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WN ++S  I    ++        M+ +    D +T  ++L+      D    R +H  
Sbjct: 317 ISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGV 376

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++ G+  N  + ++++D Y KC  VE AR VFD +  +D+V W+ M++ +A N   D A
Sbjct: 377 IIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEA 436

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           I+VF  M  E +  +  +  +L+ +C      +  +  HG+ +++    +V + TS++DM
Sbjct: 437 ISVFKQMNEEVIPNN-VSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDM 495

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G+I+ + R F+ +  KNVV W+ M+  F  NG   EA+ L   + Q    P+ VT 
Sbjct: 496 YSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTA 555

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S+LS+C            H   I+ G+  F S+                 +Q  G   E
Sbjct: 556 LSLLSACS-----------HGGLIEEGLSFFTSM-----------------VQKHGI--E 585

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           P L  ++ I+   +  G   E++E+ EK+        SI +  +LS+C   G +S G
Sbjct: 586 PGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASI-WGTLLSSCRSYGNISLG 641



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 152/319 (47%), Gaps = 4/319 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D     S+L+AC       +G  +H  ++K G   +  ++++ +D Y K G ++ A+R F
Sbjct: 47  DTWVLPSILKACSNTS-FNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAF 105

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D    +D V WNVMV     N      +  F   R    + +  +   ++ +   L    
Sbjct: 106 DSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYS 165

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN-VVSWNTMVVGF 339
            G   HG + +  F   + V  SL+ +YA+  ++  A ++F  M+ +N VVSW+ M+ GF
Sbjct: 166 QGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAYKLFGEMSVRNDVVSWSVMIGGF 224

Query: 340 GQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            Q G+  +   + R+M+ +    PD VT+ S+L +C +L        VH   I  G++  
Sbjct: 225 VQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDD 284

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L + N+LI+ YSKC ++  A + F  + E ++++W  ++ AY  +    E++ +   M+ 
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 459 HAVRPDSIAFLEVLSACSH 477
                D +    VL    H
Sbjct: 345 EGAEKDEVTLANVLQIAKH 363



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 5/249 (2%)

Query: 247 AIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           A+ +++ +R+ G +  D +   S++ +C    S  LG  +HG +IKQ       +A S +
Sbjct: 31  ALQLYHEIRISGAQLSDTWVLPSILKACSNT-SFNLGTAMHGCLIKQGCQSSTSIANSTI 89

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D Y K G++D A R FD    K+ VSWN MV G   NG     +          F P+  
Sbjct: 90  DFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNIS 149

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           +L  ++ +   L I  +    H Y  ++G  A LS++N+L++ Y++   +  A + FG +
Sbjct: 150 SLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAYKLFGEM 208

Query: 426 K-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSE 483
               D+V+W+ +IG +   G  ++   +F  M++ A + PD +  + VL AC++   +S 
Sbjct: 209 SVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISL 268

Query: 484 GLRYFNLMI 492
           G     L+I
Sbjct: 269 GTMVHGLVI 277


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 286/461 (62%), Gaps = 2/461 (0%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           + +L+ C +   +   +  H  I+++    +  + + L++ Y KCGFVE AR+VFD +L 
Sbjct: 65  HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE 124

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R LV WN M+  Y  N +   A+ +F  MR EG K   FT SS++++CG    +   +++
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 184

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L +K   DL++ V T+L+D+YAK G I DA +VF+ M  K+ V+W++MV G+ QN + 
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 244

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EA+ L R   + S   ++ TL+S++ +C +L+   E +Q+HA   K+G  + + + ++ 
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSA 304

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+KCGS+  +   F  V+E +L  W +II  +A H   KE + +FEKM    + P+ 
Sbjct: 305 VDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 364

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           + F  +LS C H GLV EG R+F LM + Y + P+  HY+C+ D+LGR GLL EAY+L+ 
Sbjct: 365 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 424

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           S+P +P +   G+ + +C+V+ ++ LA+ AAEKL ELEP    N+ L+SN+YA+ + W +
Sbjct: 425 SIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEE 484

Query: 586 VARLRKMMRDNCD-HKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           +A+ RK++RD CD  KV G SWI+I  ++HTF   +  HP+
Sbjct: 485 IAKSRKLLRD-CDVKKVRGKSWIDIKDKVHTFSVGESGHPR 524



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 215/416 (51%), Gaps = 16/416 (3%)

Query: 35  TNAQKHDRSVLSS--QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKL 92
           T++   + SVL+S  Q   S   + +  S  +   + L++ A+ G + + K  H  I+++
Sbjct: 31  TSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRI 90

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYF 150
            L   ++L N +++ Y KC   +   ++FD M  R++V+WNT+I               F
Sbjct: 91  DLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIF 150

Query: 151 RRMLLDNVRLDHITFNSLLRAC-VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
             M  +  +    T +S+L AC V  D +E  ++LH   +K    LN +V +AL+DLY K
Sbjct: 151 LEMRNEGFKFSEFTISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAK 209

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG ++DA +VF+ +  +  V W+ MV+ Y  N   + A+ ++   +   ++ + FT SS+
Sbjct: 210 CGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 269

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + +C  L +   G+Q+H ++ K  F  +V VA+S VDMYAK G++ ++  +F  +  KN+
Sbjct: 270 ICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 329

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH-- 387
             WNT++ GF ++   +E + L   M Q    P+EVT +S+LS CG   +  E R+    
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 389

Query: 388 ---AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
               Y +   V  +    + +++   + G ++ A +   S+  +P    W S++ +
Sbjct: 390 MRTTYGLSPNVVHY----SCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 282/466 (60%), Gaps = 1/466 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++SL+ AC +   ++  R +H+ +    F  + F+ ++L+ LY KCG V DARRVFD + 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+  W  +++ YA N + D A+ +   M     K + FTF+SL+ + G   SS +G Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  +  DV V ++L+DMYA+ G +D A  VFD + +KN VSWN ++ GF + GD
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G   + +  +M +  F     T +S+ S+   +    + + VHA+ IK+G +    + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +++ Y+K GS+  A + F  V + D+VTW S++ A+A +GL +E++  FE+M    V  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I FL +L+ACSHGGLV EG +YF++M  +Y++ P+ +HY  + DLLGR GLL +A   +
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP++P +   GA +G+C++H +  + ++AA+ + EL+P       L+ N+YAS   W 
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
             AR+RKMM+     K P CSW+EI   +H FV++D +HP++  +Y
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIY 531



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 202/389 (51%), Gaps = 9/389 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y   +   A++  L   + +H+H+        + L N ++H+Y KC A  D  ++FD M
Sbjct: 66  LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGM 125

Query: 125 RVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             R++ +W +LI+G      N  P         ML    + +  TF SLL+A   +    
Sbjct: 126 PARDMCSWTSLIAGYAQ---NDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSG 182

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G ++H+  +K  +  + +V SAL+D+Y +CG ++ A  VFD++  ++ V WN +++ +A
Sbjct: 183 IGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
               G+  + +F  M+  G +  +FT+SS+ ++   +G+ + G+ +H  +IK    L   
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +++DMYAK+G++ DA +VFD +  K+VV+WN+M+  F Q G GREAV    +M +  
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 362

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              +++T  SIL++C    +  E +Q      +  ++  +     +++   + G +  AL
Sbjct: 363 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 420 Q-CFGSVKEPDLVTWTSIIGAYAFHGLSK 447
              F    +P    W +++G+   H  +K
Sbjct: 423 VFIFKMPMKPTAAVWGALLGSCRMHKNAK 451



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 37/271 (13%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  YS      A  G L+QGK +H+H++K G      + N +L +Y K  +  D  K+
Sbjct: 264 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 323

Query: 121 FDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD +  +++VTWN++++       G     +F  M    V L+ ITF S+L AC     +
Sbjct: 324 FDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 383

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           + G++    + +            +VDL G+ G + DA                      
Sbjct: 384 KEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA---------------------- 421

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                    + +F +     MK     + +L+ SC    ++K+G+     V +   D D 
Sbjct: 422 --------LVFIFKM----PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD-DT 468

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
                L ++YA  G  D A RV   M A  V
Sbjct: 469 GPPVLLYNIYASTGQWDAAARVRKMMKATGV 499


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 325/604 (53%), Gaps = 9/604 (1%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           +      +  +L  Q++ SG         +S +   LK  AK   L+  + +H+H++K  
Sbjct: 29  VNQGHAQNALILFRQMKQSGITPN-----NSTFPFVLKACAKLSHLRNSQIIHAHVLKSC 83

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFR 151
             + + +Q   + +YVKC   +D   +F EM VR+I +WN ++ G    G    ++   R
Sbjct: 84  FQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLR 143

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
            M L  +R D +T   L+ + ++   +     ++SF +++G  ++  V++ L+  Y KCG
Sbjct: 144 HMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCG 203

Query: 212 FVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
            +  A  +FDE+    R +V WN M++ YA       A+  +  M   G   D  T  +L
Sbjct: 204 NLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNL 263

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           ++SC    +   G  +H   +K   D DV V  +L+ MY+K G++  A  +F+GM+ K  
Sbjct: 264 LSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTC 323

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           VSW  M+  + + G   EA+ L   M      PD VT+ +++S CG        + +  Y
Sbjct: 324 VSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNY 383

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
           +I NG++  + + NALI+ Y+KCG    A + F ++    +V+WT++I A A +G  K++
Sbjct: 384 SINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDA 443

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
           +E+F  ML   ++P+ I FL VL AC+HGGLV  GL  FN+M   Y I P  +HY+C+ D
Sbjct: 444 LELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVD 503

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569
           LLGR G L EA +++ SMP EP S    A + ACK+HG + + K+ +E+L ELEP   V 
Sbjct: 504 LLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVP 563

Query: 570 YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
           Y  ++N+YAS   W  VA +R+ M+     K PG S I++ G+   F   DR HP+ +++
Sbjct: 564 YVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIFTVEDRDHPETLYI 623

Query: 630 YAML 633
           Y ML
Sbjct: 624 YDML 627



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 212/430 (49%), Gaps = 8/430 (1%)

Query: 125 RVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           R   + TWN+    ++N G   N    FR+M    +  ++ TF  +L+AC +   +   +
Sbjct: 14  RFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQ 73

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H+ +LK  F  N FV +A VD+Y KCG +EDA  VF E+  RD+  WN M+  +A + 
Sbjct: 74  IIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSG 133

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             D    +   MRL G++ D  T   L++S   + S      ++   I+    +DV VA 
Sbjct: 134 FLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVAN 193

Query: 303 SLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +L+  Y+K GN+  A  +FD + +  ++VVSWN+M+  +       +AV   + ML G F
Sbjct: 194 TLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGF 253

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD  T+ ++LSSC           VH++ +K G  + + + N LI  YSKCG +  A  
Sbjct: 254 SPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARF 313

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  + +   V+WT +I AYA  G   E++ +F  M +   +PD +  L ++S C   G 
Sbjct: 314 LFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGA 373

Query: 481 VSEGLRYFNLMISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           +  G    N  I++   L D+      L D+  + G   +A +L  +M       +    
Sbjct: 374 LELGKWIDNYSINNG--LKDNVVVCNALIDMYAKCGGFNDAKELFYTMA-NRTVVSWTTM 430

Query: 540 IGACKVHGSI 549
           I AC ++G +
Sbjct: 431 ITACALNGDV 440


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 326/599 (54%), Gaps = 10/599 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           +LRNS  + +S        S  L   A    ++QG+ LH   +K G+ +   + N +L +
Sbjct: 197 ELRNSWIVPDSFT-----VSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAM 251

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV---RLDHIT 164
           Y+K     D  ++FDEM VR+ VT+NT+I G +     +     +M L+N+   + D +T
Sbjct: 252 YLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKL--EMVEESVKMFLENLDQFKPDILT 309

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
             S+L AC    D+ + + +++++L+ GF L   V + L+D+Y KCG +  AR VF+ + 
Sbjct: 310 VTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSME 369

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           C+D V WN ++S Y  +     A+ +F +M +   + D+ T+  L++    L   K G+ 
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKG 429

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H   IK    +D+ V+ +L+DMYAK G + D+ ++F+ M   + V+WNT++    + GD
Sbjct: 430 LHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGD 489

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
               +++   M +    PD  T    L  C SL+     +++H   ++ G ++ L I NA
Sbjct: 490 FATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA 549

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI  YSKCG +  + + F  +   D+VTWT +I AY  +G  ++++E F  M    + PD
Sbjct: 550 LIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPD 609

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           S+ F+ ++ ACSH GLV +GL  F  M + Y I P  EHY C+ DLL R   + +A + +
Sbjct: 610 SVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFI 669

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +MPIEP +    + + AC+  G +  A+  + +++EL P  P    L SN YA+ R W 
Sbjct: 670 QAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWD 729

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            V+ +RK +RD    K PG SWIEI  ++H F S D S PQ+  ++  L  ++ LM + 
Sbjct: 730 KVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKE 788



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/482 (28%), Positives = 247/482 (51%), Gaps = 28/482 (5%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T  + +F S+AL  S+    L + +++H+ ++ LGL        +++  Y   +A     
Sbjct: 3   TRVSSAFISRALSSSSN---LNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSL 59

Query: 119 KLFDEMR-VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            +F  +   +N+  WN++I      G       ++ ++    V  D  TF S+++AC   
Sbjct: 60  SVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGL 119

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D E+G  ++  IL++GF  + +V +ALVD+Y + G +  AR+VFDE+  RDLV WN ++
Sbjct: 120 FDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLI 179

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S Y+ +   + A+ +++ +R   +  D FT SS++ +   L   K G+ +HG  +K   +
Sbjct: 180 SGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVN 239

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
              +V   L+ MY K     DA RVFD M  ++ V++NTM+ G+ +     E+VK+  + 
Sbjct: 240 SVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN 299

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L   F PD +T+ S+L +CG L      + ++ Y ++ G     +++N LI+ Y+KCG +
Sbjct: 300 LD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDM 358

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F S++  D V+W SII  Y   G   E++++F+ M+    + D I +L ++S  
Sbjct: 359 ITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLS 418

Query: 476 SH-------GGLVSEGLR---YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           +         GL S G++   Y +L +S+            L D+  + G + ++  +  
Sbjct: 419 TRLADLKFGKGLHSNGIKSGIYIDLSVSN-----------ALIDMYAKCGEVGDSLKIFN 467

Query: 526 SM 527
           SM
Sbjct: 468 SM 469



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           ++  LSS  +L+   E R++HA  I  G+         LI+ YS   + A +L  F  V 
Sbjct: 10  ISRALSSSSNLN---ELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVS 66

Query: 427 E-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              ++  W SII A++ +G   +++E + K+    V PD   F  V+ AC+ G   +E  
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACA-GLFDAEMG 125

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
                 I +     D      L D+  R+GLL  A  +   MP+ 
Sbjct: 126 DLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVR 170


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 311/565 (55%), Gaps = 12/565 (2%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           F  L+  K +H+ +++LGL     L N+VL         +   ++ D+ +  NI  +NT+
Sbjct: 20  FSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTM 79

Query: 136 ISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G++  +C       +  M  + +  D  TF  +L+AC +  D E+G ++HS ++K G 
Sbjct: 80  IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGC 139

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + FV  +L++LY KCGF+++A +VFD++  ++   W   +S Y        AI +F  
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           +   G++ D F+   ++++C   G  + G  I   + +     +V VAT+LVD Y K GN
Sbjct: 200 LLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGN 259

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++ A  VFDGM  KN+VSW++M+ G+  NG  +EA+ L   ML     PD   +  +L S
Sbjct: 260 MERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCS 319

Query: 374 CGSLSISCETRQVHAYA--IKNGVQAFLS---IENALINAYSKCGSIAGALQCFGSVKEP 428
           C  L       ++  +A  + NG   FL    +  ALI+ Y+KCG +  A + F  +++ 
Sbjct: 320 CARLG----ALELGDWASNLING-NEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKK 374

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D V W + I   A  G  K+++ +F +M    ++PD   F+ +L AC+H GLV EG RYF
Sbjct: 375 DRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYF 434

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
           N M   + + P+ EHY C+ DLLGR G L EA+ L+ SMP+E  +   GA +G C++H  
Sbjct: 435 NSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRD 494

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
             L +   +KL+ LEP    NY L+SN+YA+   W + A++R +M +    K+PG SWIE
Sbjct: 495 TQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIE 554

Query: 609 IAGEIHTFVSSDRSHPQAVHMYAML 633
           + G +H F+  D SHP +  +YA L
Sbjct: 555 VDGVVHQFLVGDTSHPLSEKIYAKL 579



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 213/435 (48%), Gaps = 31/435 (7%)

Query: 44  VLSSQLRNSGTIHESTH----SAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKL 98
           VL+   + S  I+ S      S  SF +   LK  A+    + G ++HS ++K G     
Sbjct: 84  VLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADA 143

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
            ++  ++++Y KC   D+  K+FD++  +N  +W   ISG +  G        FRR+L  
Sbjct: 144 FVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEM 203

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            +R D  +   +L AC +  D+  G  +  +I + G   N FV++ALVD YGKCG +E A
Sbjct: 204 GLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERA 263

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R VFD +L +++V W+ M+  YA N L   A+ +F  M  EG+K D +    ++ SC  L
Sbjct: 264 RSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARL 323

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+ +LG     L+    F  + ++ T+L+DMYAK G +D A  VF GM  K+ V WN  +
Sbjct: 324 GALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAI 383

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   +G  ++A+ L   M +    PD  T   +L +C            HA  ++ G +
Sbjct: 384 SGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC-----------THAGLVEEGRR 432

Query: 397 AFLSIE------------NALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
            F S+E              +++   + G +  A Q   S+  E + + W +++G    H
Sbjct: 433 YFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492

Query: 444 GLSKESIEVFEKMLS 458
             ++    V +K+++
Sbjct: 493 RDTQLVEVVLKKLIA 507



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 207/466 (44%), Gaps = 26/466 (5%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           + L    + G L+ G+ +  +I + G+   + +   ++  Y KC   +    +FD M  +
Sbjct: 214 EVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEK 273

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           NIV+W+++I G  + G        F +ML + ++ D      +L +C +   +E+G    
Sbjct: 274 NIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWAS 333

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + I    F  N  + +AL+D+Y KCG ++ A  VF  +  +D V+WN  +S  A++    
Sbjct: 334 NLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVK 393

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSL 304
            A+ +F  M   G+K D  TF  L+ +C   G  + GR+  + +    +   ++     +
Sbjct: 394 DALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCM 453

Query: 305 VDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDM--LQGSFC 361
           VD+  + G +D+A ++   M  + N + W  ++ G   + D +    +L+ +  L+    
Sbjct: 454 VDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHS 513

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE-NALINA------------ 408
            + V L++I ++      + + R + +      +  +  IE + +++             
Sbjct: 514 GNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSE 573

Query: 409 --YSKCGSIAGALQCFGSVKEPDLVTW-TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
             Y+K G +A  L+  G V   D V +         F G   E + V   ++S A   D 
Sbjct: 574 KIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPN-DK 632

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           I  ++ L  C   G   E +++ + +     I+ D+  + C TD L
Sbjct: 633 ILVVKNLRVC---GDCHEAIKHISRIAGREIIVRDNNRFHCFTDGL 675


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 306/565 (54%), Gaps = 2/565 (0%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L  G+Q+H  ++K+   +   +   +L +Y K  + +D +K+FD++  + +   N +IS 
Sbjct: 665  LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 724

Query: 139  IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             I  G   +    + +M      +D  T +SLL  C      + GR +H+ ++K     N
Sbjct: 725  FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 784

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
              + SAL+ +Y KCG  EDA  VF  +  RD+V W  M++ +  N     A+ +F  M  
Sbjct: 785  VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 844

Query: 257  EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            EG+K D    +S++++   L + +LG  IHG  IK+  + DV VA SLVDMY+K G  + 
Sbjct: 845  EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAES 904

Query: 317  ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
            A  VF  M  KN+V+WN+M+  +  NG    ++ LL  +LQ  F  D V++ ++L +  S
Sbjct: 905  AEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSS 964

Query: 377  LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            ++   + + +HAY I+  + + L +ENALI+ Y KCG +  A   F ++   +LVTW S+
Sbjct: 965  VAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSM 1024

Query: 437  IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
            I  Y  HG  +E++ +F++M      PD + FL ++++CSH G+V EGL  F LM  +Y 
Sbjct: 1025 IAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYG 1084

Query: 497  ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
            + P  EHY  + DLLGR G L +AY  +  MPI+         + AC+ H ++ L +  A
Sbjct: 1085 VEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVA 1144

Query: 557  EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
            + LL++EP++  NY  + N+Y     W   A LR  M+     K PGCSWIE+   +  F
Sbjct: 1145 DNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVF 1204

Query: 617  VSSDRSHPQAVHMYAMLCTVFGLME 641
             S D S  + + +Y  L ++   ME
Sbjct: 1205 FSGDSSSTRRIEIYKTLSSLKSNME 1229



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 144/490 (29%), Positives = 242/490 (49%), Gaps = 17/490 (3%)

Query: 51  NSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK 110
           +S T H +  +A   +   LK  A    L  G+ +H+ I+ +GL +   +   ++++YVK
Sbjct: 429 HSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVK 488

Query: 111 CKAFDDMEKLFDEMR-----VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHI 163
           C       ++FD+M        +I  WN +I G    G        F RM    +R D  
Sbjct: 489 CGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGY 548

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           + + +L  C +      GR++H +I++  F  + ++ +AL+ +Y  C    +A  +F ++
Sbjct: 549 SLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKL 608

Query: 224 LCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
             R ++V WNVM+  +  N + + ++ +++L + E  K    +F+    +C        G
Sbjct: 609 ENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG 668

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  VIK +F  D  V TSL+ MYAK+G+++DA +VFD +  K V   N M+  F  N
Sbjct: 669 RQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGN 728

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   +A+ L   M  G    D  T++S+LS C  +      R VHA  IK  +Q+ ++I+
Sbjct: 729 GRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQ 788

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           +AL+  Y KCGS   A   F ++KE D+V W S+I  +  +   K+++++F  M    V+
Sbjct: 789 SALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVK 848

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI---LPDSEHYTC-LTDLLGRVGLLV 518
            DS     V+SA    GL  E +   +L I  + I   L       C L D+  + G   
Sbjct: 849 ADSDVMTSVISA----GLGLENVELGHL-IHGFAIKRGLESDVFVACSLVDMYSKFGFAE 903

Query: 519 EAYDLLASMP 528
            A  + +SMP
Sbjct: 904 SAEMVFSSMP 913



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q G   +A++L       +    + T  S+L +C SLS     R +HA  +  G+Q+   
Sbjct: 418 QQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPY 477

Query: 401 IENALINAYSKCGSIAGALQCFGSVKE-----PDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           I  +LIN Y KCG +  ALQ F  + E     PD+  W  +I  Y  +G  +E +  F +
Sbjct: 478 IATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCR 537

Query: 456 MLSHAVRPDSIAFLEVLSACSH 477
           M    +RPD  +   VL  C+ 
Sbjct: 538 MQELGIRPDGYSLSIVLGICNR 559


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/646 (32%), Positives = 333/646 (51%), Gaps = 59/646 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            K   +   ++ G   H+     G  + + + N ++ +Y +C +  D  K+FDEM V ++
Sbjct: 134 FKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDV 193

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+WN++I      G        F +M  +   R D IT  ++L  C       +G++ H 
Sbjct: 194 VSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHG 253

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           F +      N FV + LVD+Y K G +++A  VF  +  +D+V WN MV+ Y+     + 
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFED 313

Query: 247 AIAVFNLMRLEGMKGDYFTFS-----------------------------------SLVN 271
           A+ +F  M+ E +K D  T+S                                   S+++
Sbjct: 314 AVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDL-------DVLVATSLVDMYAKNGNIDDACRVFDGM 324
            C ++G+   G++IH   IK   DL       + +V   L+DMYAK   +D A  +FD +
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSL 433

Query: 325 TAK--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC---PDEVTLASILSSCGSLSI 379
           + K  +VV+W  M+ G+ Q+GD  +A++LL +M +   C   P+  T++  L +C SL+ 
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAA 492

Query: 380 SCETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
               +Q+HAYA++N   A  L + N LI+ Y+KCG I  A   F ++ E + VTWTS++ 
Sbjct: 493 LSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMT 552

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            Y  HG  +E++ +FE+M     + D +  L VL ACSH G++ +G+ YFN M +D+ + 
Sbjct: 553 GYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVS 612

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY CL DLLGR G L  A  L+  MP+EP      A +  C++HG + L ++AA+K
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKK 672

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           + EL  +   +Y L+SN+YA+   W DV R+R +MR     K PGCSW+E      TF  
Sbjct: 673 ITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFV 732

Query: 619 SDRSHPQAVHMYAMLC------TVFGLMEENNVSGHCNVLDKEMDE 658
            D++HP A  +Y +L          G + E   + H +V D+E D+
Sbjct: 733 GDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALH-DVDDEEKDD 777



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 153/538 (28%), Positives = 243/538 (45%), Gaps = 57/538 (10%)

Query: 65  FYSQALKVSAKF----GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           F + AL+++  F      + Q K +H  ++  G+   L+L + ++  Y+          L
Sbjct: 23  FSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILT-LNLTSHLISTYISLGCLSHAVSL 81

Query: 121 FDEMRVRN--IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
                  +  +  WN+LI    N G        F  M   +   D+ TF  + +AC +  
Sbjct: 82  LRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEIS 141

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +  G   H+     GF  N FV +ALV +Y +CG + DAR+VFDE+   D+V WN ++ 
Sbjct: 142 SVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIE 201

Query: 237 CYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
            YA       A+ +F+ M  E G + D  T  +++  C ++G+  LG+Q HG  +     
Sbjct: 202 SYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMI 261

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL--- 352
            ++ V   LVDMYAK G +D+A  VF  M  K+VVSWN MV G+ Q G   +AV+L    
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQM 321

Query: 353 --------------------------------RDMLQGSFCPDEVTLASILSSCGSLSIS 380
                                           R ML     P+EVTL S+LS C S+   
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 381 CETRQVHAYAI-------KNGVQAFLSIENALINAYSKCGSIAGALQCFGSV--KEPDLV 431
              +++H YAI       KNG      + N LI+ Y+KC  +  A   F S+  KE D+V
Sbjct: 382 MHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVV 441

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSH--AVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           TWT +IG Y+ HG + +++E+  +M       RP++      L AC+    +S G +   
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHA 501

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             + +           CL D+  + G + +A  +  +M +E    T  + +    +HG
Sbjct: 502 YALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHG 558



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEM 124
           S AL   A    L  GKQ+H++ ++    N + L   N ++ +Y KC    D   +FD M
Sbjct: 481 SCALVACASLAALSIGKQIHAYALR-NQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM 539

Query: 125 RVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             +N VTW +L++  G+   G      F  M     +LD +T   +L AC  +  I+ G 
Sbjct: 540 MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGM 599

Query: 183 RLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSC 237
              +  +K  FG++      + LVDL G+ G +  A R+ +E+ +    V+W  ++SC
Sbjct: 600 EYFNR-MKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSC 656


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/607 (32%), Positives = 321/607 (52%), Gaps = 59/607 (9%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMR-----VRNIVTWNTLISGIINCGGNVTPY--FRRML 154
           N ++  Y +   F++  K F EM        N+V+W  LI+G    G +      FR+M+
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFV 213
           L+ V+ + IT  S + AC     +  GR +H + +KV     +  V ++LVD Y KC  V
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN-- 271
           E ARR F  +   DLV WN M++ YAL    + AI + + M+ +G++ D  T++ LV   
Sbjct: 415 EVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGF 474

Query: 272 ---------------------------------SCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                                            +CG + + KLG++IHG V++   +L  
Sbjct: 475 TQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELST 534

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V ++L+ MY+   +++ AC VF  ++ ++VV WN+++    Q+G    A+ LLR+M   
Sbjct: 535 GVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLS 594

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           +   + VT+ S L +C  L+   + +++H + I+ G+     I N+LI+ Y +CGSI  +
Sbjct: 595 NVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKS 654

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  + + DLV+W  +I  Y  HG   +++ +F+   +  ++P+ I F  +LSACSH 
Sbjct: 655 RRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHS 714

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL+ EG +YF +M ++Y + P  E Y C+ DLL R G   E  + +  MP EP +   G+
Sbjct: 715 GLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGS 774

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +GAC++H +  LA++AA  L ELEP    NY L++N+Y++   W D A++R +M++   
Sbjct: 775 LLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGV 834

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
            K PGCSWIE+  ++H+FV  D SHP              LME+  +SG    LD + DE
Sbjct: 835 TKPPGCSWIEVKRKLHSFVVGDTSHP--------------LMEQ--ISGKDGKLDVDEDE 878

Query: 659 CTLWLPG 665
               L G
Sbjct: 879 KEFSLCG 885



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 221/436 (50%), Gaps = 43/436 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L+   K   L+ G Q+H+ ++  G+     L +++L VY +    +D  ++FD+M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+ +W  ++      G        F  M+ + VR DH  F  + +AC +  +  VG+ 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           ++ ++L +GF  N  V  +++D++ KCG ++ ARR F+E+  +D+ +WN+MVS Y     
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+   + M+L G+K D  T++++++                                
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISG------------------------------- 300

Query: 304 LVDMYAKNGNIDDACRVFDGMTA-----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
               YA++G  ++A + F  M        NVVSW  ++ G  QNG   EA+ + R M+  
Sbjct: 301 ----YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAG 417
              P+ +T+AS +S+C +LS+    R++H Y IK   + + L + N+L++ Y+KC S+  
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + FG +K+ DLV+W +++  YA  G  +E+IE+  +M    + PD I +  +++  + 
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 478 GGLVSEGLRYFNLMIS 493
            G     L +F  M S
Sbjct: 477 YGDGKAALEFFQRMHS 492



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 228/514 (44%), Gaps = 73/514 (14%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++E     H  + +  K  ++    + GK ++ +++ +G      ++  +L +++KC   
Sbjct: 182 VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRM 241

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D   + F+E+  +++  WN ++SG  + G           M L  V+ D +T+N+++   
Sbjct: 242 DIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGY 301

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            Q+   E   +   + L++G GL  F                            ++V W 
Sbjct: 302 AQSGQFEEASK---YFLEMG-GLKDFKP--------------------------NVVSWT 331

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK- 291
            +++    N     A++VF  M LEG+K +  T +S V++C  L   + GR+IHG  IK 
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM---------------- 335
           +  D D+LV  SLVD YAK  +++ A R F  +   ++VSWN M                
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 336 -------------------VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
                              V GF Q GDG+ A++  + M      P+  T++  L++CG 
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQ 511

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +      +++H Y ++N ++    + +ALI+ YS C S+  A   F  +   D+V W SI
Sbjct: 512 VRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSI 571

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I A A  G S  ++++  +M    V  +++  +  L ACS    + +G      +I    
Sbjct: 572 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII---R 628

Query: 497 ILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMP 528
              D+ ++    L D+ GR G + ++  +   MP
Sbjct: 629 CGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 662



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 132/281 (46%), Gaps = 3/281 (1%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           ++S++  C  L + +LG Q+H  ++    D+   + + L+++Y + G ++DA R+FD M+
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +NV SW  ++  +   GD  E +KL   M+     PD      +  +C  L      + 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           V+ Y +  G +    ++ ++++ + KCG +  A + F  ++  D+  W  ++  Y   G 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            K++++    M    V+PD + +  ++S  +  G   E  +YF  M       P+   +T
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIE---PRSDTLGAFIGAC 543
            L     + G   EA  +   M +E   P S T+ + + AC
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 8/213 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   +K   L+QGK++H  I++ GL     + N ++ +Y +C +     ++FD M  R+
Sbjct: 606 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 129 IVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+WN +IS  G+   G +    F+      ++ +HITF +LL AC  +  IE G +   
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 187 FILKVGFGLNCFVS--SALVDLYGKCG-FVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            ++K  + ++  V   + +VDL  + G F E    +       +  +W  ++    ++C 
Sbjct: 726 -MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCN 784

Query: 244 GDGA-IAVFNLMRLEGM-KGDYFTFSSLVNSCG 274
            D A  A   L  LE    G+Y   +++ ++ G
Sbjct: 785 PDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 301/550 (54%), Gaps = 6/550 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    K + +   ++ G  +H  I++        +QN +L +Y+     +    +FD M+
Sbjct: 120 YPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMK 179

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++++WNT+ISG    G   +    F  M+ ++V LDH T  S+L  C    D+E+GR 
Sbjct: 180 NRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRN 239

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  + +   G    V +ALV++Y KCG +++AR VFD +  RD++ W  M++ Y  +  
Sbjct: 240 VHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGD 299

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +  LM+ EG++ +  T +SLV+ CG       G+ +HG  ++Q    D+++ TS
Sbjct: 300 VENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETS 359

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK   +D   RVF G +  +   W+ ++ G  QN    +A+ L + M +    P+
Sbjct: 360 LISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPN 419

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL S+L +  +L+   +   +H Y  K G  + L     L++ YSKCG++  A + F 
Sbjct: 420 IATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFN 479

Query: 424 SVKEP----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            ++E     D+V W ++I  Y  HG    +++VF +M+   V P+ I F   L+ACSH G
Sbjct: 480 GIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSG 539

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EGL  F  M+  Y  L  S HYTC+ DLLGR G L EAY+L+ ++P EP S   GA 
Sbjct: 540 LVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGAL 599

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC  H ++ L + AA KL ELEP    NY L++N+YA+   W D+ ++R MM +    
Sbjct: 600 LAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLR 659

Query: 600 KVPGCSWIEI 609
           K PG S IEI
Sbjct: 660 KKPGHSTIEI 669



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 241/489 (49%), Gaps = 9/489 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L   A    + + K LH H++  G  +   L    +  Y  C       KLF+EM 
Sbjct: 18  YQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSV-TYALCGHITYARKLFEEMP 76

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVG 181
             +++++N +I   +  G   +    F RM+ + V+   D  T+  + +A  +   +++G
Sbjct: 77  QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLG 136

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +H  IL+  FG + +V +AL+ +Y   G VE AR VFD +  RD++ WN M+S Y  N
Sbjct: 137 LVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRN 196

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A+ +F+ M  E +  D+ T  S++  CG L   ++GR +H LV ++     + V 
Sbjct: 197 GYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVK 256

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +LV+MY K G +D+A  VFD M  ++V++W  M+ G+ ++GD   A++L R M      
Sbjct: 257 NALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVR 316

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+ VT+AS++S CG      + + +H +A++  V + + IE +LI+ Y+KC  +    + 
Sbjct: 317 PNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRV 376

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F    +     W++II     + L  +++ +F++M    V P+      +L A +    +
Sbjct: 377 FSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADL 436

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL---GA 538
            + +   +  ++    +   +  T L  +  + G L  A+ +   +  + +S  +   GA
Sbjct: 437 RQAMN-IHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGA 495

Query: 539 FIGACKVHG 547
            I    +HG
Sbjct: 496 LISGYGMHG 504



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 193/397 (48%), Gaps = 8/397 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++ES    H+     L V      L+ G+ +H  + +  L +K+ ++N ++++Y+KC   
Sbjct: 210 VNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D+   +FD M  R+++TW  +I+G    G   N     R M  + VR + +T  SL+  C
Sbjct: 270 DEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVC 329

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             A  +  G+ LH + ++     +  + ++L+ +Y KC  V+   RVF          W+
Sbjct: 330 GDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWS 389

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++    N L   A+ +F  MR E ++ +  T +SL+ +   L   +    IH  + K 
Sbjct: 390 AIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKT 449

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGM----TAKNVVSWNTMVVGFGQNGDGREA 348
            F   +  AT LV +Y+K G ++ A ++F+G+     +K+VV W  ++ G+G +GDG  A
Sbjct: 450 GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNA 509

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALIN 407
           +++  +M++    P+E+T  S L++C    +  E   +  + +++    A  +    +++
Sbjct: 510 LQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVD 569

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
              + G +  A     ++  EP    W +++ A   H
Sbjct: 570 LLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTH 606


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 293/535 (54%), Gaps = 2/535 (0%)

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYF 150
           G  + L+L N ++++Y KC    D  +LF+ +  R+IV+WN+L+S     G    +    
Sbjct: 177 GFESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLL 236

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           + M +++++ D  TF S L A     D+ +G+ +H  +LK G  ++  V SALV LY +C
Sbjct: 237 QAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRC 296

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
             ++ A +VF     +D+V+W  M+S    N   D A+ VF  M    +K    T +S +
Sbjct: 297 RCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGL 356

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +C  LG   +G  IHG V++Q   LD+    SLV MYAK   +  +C +F+ M  K++V
Sbjct: 357 AACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLV 416

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SWN +V G  +NG   + +    +M +    PD +T+ S+L +CGS    C+ + +H + 
Sbjct: 417 SWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFV 476

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +++ +   +  E AL++ Y KCG++  A +CF  + + DLV W+++I  Y F+G  + ++
Sbjct: 477 LRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIAL 536

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
             + + L   + P+ + F+ VLSACSHGGL+S+GL  +  M  D+ + P+ EH  C+ DL
Sbjct: 537 RKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDL 596

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           L R G + EAY     M  EP    LG  + AC+V+G + L K  A  + EL+P  P N+
Sbjct: 597 LSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNF 656

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
             ++N YAS   W  V +    MR     K PG S IE+ G   TF +S  SHP+
Sbjct: 657 VQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVHGTTFTFFASHNSHPK 711



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 238/470 (50%), Gaps = 12/470 (2%)

Query: 57  ESTHS---AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           + TH+   A++F S   K          G  LH  ++  GL +   + + ++  Y K   
Sbjct: 41  QKTHTQLDAYTFPS-LFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGC 99

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT---PYFRRMLLDNVRLDHITFNSLLR 170
                K+FD M  RN+V W T+I G  +  G++      F++M    ++   +T  SLL 
Sbjct: 100 IHLGRKVFDTMLKRNVVPWTTII-GSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
              +   + +   LH  I+  GF  +  +S+++V++YGKCG + DARR+F+ + CRD+V 
Sbjct: 159 GISK---LPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVS 215

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN ++S Y+     +  + +   M++E +K D  TF S +++    G  +LG+ +HGL++
Sbjct: 216 WNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLML 275

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K   ++D  V ++LV +Y +   +D A +VF   T K+VV W  M+ G  QN    +A+ 
Sbjct: 276 KDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALG 335

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           +   M++ +  P   TLAS L++C  L        +H Y ++ G+   +  +N+L+  Y+
Sbjct: 336 VFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYA 395

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KC  +  +   F  + E DLV+W +I+  +A +G   + I  F +M    +RPDSI    
Sbjct: 396 KCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTS 455

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           +L AC   G + +G    N ++    ++P     T L D+  + G L  A
Sbjct: 456 LLQACGSAGALCQGKWIHNFVLRS-SLIPCIMTETALVDMYFKCGNLENA 504



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 212/401 (52%), Gaps = 5/401 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           QL  +  I +      +F S AL  SA  G L+ GK +H  ++K GL     +++ ++ +
Sbjct: 234 QLLQAMKIEDIKPDKQTFCS-ALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVL 292

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITF 165
           Y++C+  D   K+F     +++V W  +ISG++  +C       F +M+  NV+    T 
Sbjct: 293 YLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATL 352

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S L AC Q    ++G  +H ++L+ G  L+    ++LV +Y KC  ++ +  +F++++ 
Sbjct: 353 ASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVE 412

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +DLV WN +V+ +A N      I  FN MR   ++ D  T +SL+ +CG+ G+   G+ I
Sbjct: 413 KDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWI 472

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  V++ S    ++  T+LVDMY K GN+++A + FD M  +++V+W+T++VG+G NG G
Sbjct: 473 HNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKG 532

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENA 404
             A++   + L     P+ V   S+LS+C    +  +   ++    K+  +   L     
Sbjct: 533 EIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRAC 592

Query: 405 LINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHG 444
           +++  S+ G +  A   +  + KEP +V    ++ A   +G
Sbjct: 593 VVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNG 633



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 185/356 (51%), Gaps = 15/356 (4%)

Query: 131 TWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           ++N+L+S +   G +  V   +  M   + +LD  TF SL +AC   +    G  LH  +
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +  G   + ++ S+L+  Y K G +   R+VFD +L R++V W  ++  Y+     D A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQIHGLVIKQSFDLDVLVATSLVD 306
           ++F  MR  G++    T  SL+      G SKL     +H L+I   F+ D+ ++ S+V+
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLP-----GISKLPLLLCLHCLIILHGFESDLALSNSMVN 190

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K G I DA R+F+ +  +++VSWN+++  + + G   E ++LL+ M      PD+ T
Sbjct: 191 MYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQT 250

Query: 367 LASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             S LS+    G L +    + VH   +K+G+     +E+AL+  Y +C  +  A + F 
Sbjct: 251 FCSALSASAIKGDLRLG---KLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFK 307

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           S  E D+V WT++I     +  + +++ VF +M+   V+P +      L+AC+  G
Sbjct: 308 STTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLG 363


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/613 (31%), Positives = 334/613 (54%), Gaps = 8/613 (1%)

Query: 25  ALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQ 84
            L+      +T   + +R++L  Q      + +S H     Y   L+  + F  +  G+ 
Sbjct: 91  TLFNAILRNLTRYGESERTLLVYQ----QMVAKSMHPDEETYPFVLRSCSSFSNVGFGRT 146

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-GIINCG 143
           +H +++KLG      +   +  +Y +C  F++  +LFD+  V+++   ++L + G  N  
Sbjct: 147 IHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDN 206

Query: 144 GN-VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           G  +   F RM+ + +  D  TF +LLR     + I++ + +H   +      +  V++A
Sbjct: 207 GEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTA 266

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           ++ LY K   + DAR++FD++  +D V+WN+M++ YA        + +F  M   G++ D
Sbjct: 267 VLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSD 326

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
            FT   +++S   L     G+Q H  +++   D  V V  SL+DMY +   +D AC++F+
Sbjct: 327 LFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFN 386

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            MT K+V+SW+ M+ G+ +NG    A+ L   M       D V + +IL +   +     
Sbjct: 387 WMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALEN 446

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK--EPDLVTWTSIIGAY 440
            + +H Y++K G+ +  S+  AL+  Y+KCGSI  A + F   K  + DL+ W S+I A+
Sbjct: 447 VKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAH 506

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG   +  +++ +M     +PD + FL +L+AC + GLV +G  +F  M   Y   P 
Sbjct: 507 ANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPS 566

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHY C+ +LLGR GL+ EA +L+ +MPI+P +   G  + ACK+H    LA++AAEKL+
Sbjct: 567 QEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLI 626

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
            +EP    NY L+SN+YA+   W  VA++R  +R+    K+PGCSW+EI G +  F  +D
Sbjct: 627 NMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVAD 686

Query: 621 RSHPQAVHMYAML 633
           ++HP+A  +Y +L
Sbjct: 687 QTHPRAGDIYTIL 699



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 215/413 (52%), Gaps = 3/413 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +Q  +Q+H+  +  G     +L ++++  Y      +   ++F  +   N+  +N ++  
Sbjct: 40  IQHLQQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRN 99

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +   G +      +++M+  ++  D  T+  +LR+C    ++  GR +H +++K+GF L 
Sbjct: 100 LTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLF 159

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V++AL ++Y +C   E+A ++FD+   +DL   + + +    N  G+G   VF  M  
Sbjct: 160 DVVATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIA 219

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E +  D FTF +L+     L S +L + +H + I      D+LV T+++ +Y+K  ++ D
Sbjct: 220 EQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVD 279

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++FD M  K+ V WN M+  + + G   E ++L + M +     D  T   ++SS   
Sbjct: 280 ARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQ 339

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      +Q HA+ ++NG  + +S+ N+LI+ Y +C  +  A + F  + +  +++W+++
Sbjct: 340 LKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAM 399

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           I  Y  +G S  ++ +F KM S  ++ D +  + +L A  H G + E ++Y +
Sbjct: 400 IKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGAL-ENVKYLH 451



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 160/338 (47%), Gaps = 4/338 (1%)

Query: 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
           +P F        RL     N+L     + + I+  +++H+  +  GF  N  +SS L+D 
Sbjct: 13  SPIFLNFPATQSRL----LNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDC 68

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           Y   G +  + +VF  V+  +L L+N ++         +  + V+  M  + M  D  T+
Sbjct: 69  YANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETY 128

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
             ++ SC +  +   GR IHG ++K  FDL  +VAT+L +MY +    ++A ++FD  + 
Sbjct: 129 PFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSV 188

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           K++   +++     QN +G    ++   M+     PD  T  ++L     L+     + V
Sbjct: 189 KDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIV 248

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H  AI + +   L +  A+++ YSK  S+  A + F  + E D V W  +I AYA  G  
Sbjct: 249 HCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKP 308

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            E +E+F+ M    +R D    L V+S+ +    V  G
Sbjct: 309 TECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWG 346


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 282/466 (60%), Gaps = 1/466 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++SL+ AC +   ++  R +H+ +    F  + F+ ++L+ LY KCG V DARRVFD + 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+  W  +++ YA N + D A+ +   M     K + FTF+SL+ + G   SS +G Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  +  DV V ++L+DMYA+ G +D A  VFD + +KN VSWN ++ GF + GD
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G   + +  +M +  F     T +S+ S+   +    + + VHA+ IK+G +    + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +++ Y+K GS+  A + F  V + D+VTW S++ A+A +GL +E++  FE+M    V  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I FL +L+ACSHGGLV EG +YF++M  +Y++ P+ +HY  + DLLGR GLL +A   +
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP++P +   GA +G+C++H +  + ++AA+ + EL+P       L+ N+YAS   W 
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
             AR+RKMM+     K P CSW+EI   +H FV++D +HP++  +Y
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIY 531



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 205/390 (52%), Gaps = 11/390 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y   +   A++  L   + +H+H+        + L N ++H+Y KC A  D  ++FD M
Sbjct: 66  LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGM 125

Query: 125 RVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R++ +W +LI+G    +           ML    + +  TF SLL+A   +    +G 
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H+  +K  +  + +V SAL+D+Y +CG ++ A  VFD++  ++ V WN +++ +A   
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G+  + +F  M+  G +  +FT+SS+ ++   +G+ + G+ +H  +IK    L   V  
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 305

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +++DMYAK+G++ DA +VFD +  K+VV+WN+M+  F Q G GREAV    +M +     
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 365

Query: 363 DEVTLASILSSCGSLSISCETRQ----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           +++T  SIL++C    +  E +Q    +  Y ++  +  ++++    ++   + G +  A
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTV----VDLLGRAGLLNDA 421

Query: 419 LQ-CFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           L   F    +P    W +++G+   H  +K
Sbjct: 422 LVFIFKMPMKPTAAVWGALLGSCRMHKNAK 451



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 37/271 (13%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  YS      A  G L+QGK +H+H++K G      + N +L +Y K  +  D  K+
Sbjct: 264 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 323

Query: 121 FDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD +  +++VTWN++++       G     +F  M    V L+ ITF S+L AC     +
Sbjct: 324 FDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 383

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           + G++    + +            +VDL G+ G + DA                      
Sbjct: 384 KEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA---------------------- 421

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                    + +F +     MK     + +L+ SC    ++K+G+     V +   D D 
Sbjct: 422 --------LVFIFKM----PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD-DT 468

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
                L ++YA  G  D A RV   M A  V
Sbjct: 469 GPPVLLYNIYASTGQWDAAARVRKMMKATGV 499


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 313/581 (53%), Gaps = 9/581 (1%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMR 125
           + LK+SA    L+ GK +HSH++      + S+   N +++ Y K         LFD M 
Sbjct: 34  KLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMP 93

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRA-----CVQADDIEV 180
            RN+V+W+ L++G +  G ++     R+L D +   +++ N  + A     C     +E 
Sbjct: 94  ERNVVSWSALMTGYLLNGFSLKVI--RLLKDMISEGNVSPNEYILAIAISSCCDRGRVEE 151

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           GR+ H  +LK GF  + +V +ALV +Y KC  V+DA  V++EV   D+V +N ++S    
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVE 211

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N      + V   M  E +K D  TF +  + C +L   +LG  +HG ++    + D  V
Sbjct: 212 NGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYV 271

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           ++++++MY K G    A  VFDG+ ++NVV W  ++    QNG   EA+ L   M Q + 
Sbjct: 272 SSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENV 331

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             +E T A +L++C  LS       +H ++ K+G +  + + NALIN Y+K G I  A +
Sbjct: 332 KSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKK 391

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D++TW ++I  ++ HGL K+++ VF+ ML+    P+ + F  VLSAC H GL
Sbjct: 392 VFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGL 451

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG  Y + ++  + + P  EHYTC+  LL + G L EA + + + P++         +
Sbjct: 452 VQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLL 511

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            AC VH + GL +W AE +LE++P+    Y L+SN+YA E+ W  V ++RK+MRD    K
Sbjct: 512 NACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKK 571

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
            PG SWIEI    H F S D  HP     Y  +  +  +++
Sbjct: 572 EPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIK 612



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 114/285 (40%), Gaps = 43/285 (15%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            E+  S    Y+  L   A     + G  LH H  K G  + + + N ++++Y K    +
Sbjct: 328 QENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIE 387

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
             +K+F +M  R+I+TWN +I G  +   G      F+ ML      +++TF  +L AC 
Sbjct: 388 AAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACG 447

Query: 174 QADDIEVG-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
               ++ G   LH  + + G        + +V L  K G + +AR               
Sbjct: 448 HLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEAR--------------- 492

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
                              N MR   +K D   + +L+N+C    +  LGR +   V++ 
Sbjct: 493 -------------------NFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEM 533

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV-----VSW 332
             + DV   T L ++YAK    D   +V   M  K +     VSW
Sbjct: 534 DPN-DVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSW 577


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 326/585 (55%), Gaps = 20/585 (3%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           GFL  G QL S ++K GL + L + N  + +Y +  +F    ++FDEM  +++++WN+L+
Sbjct: 189 GFLL-GLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLL 247

Query: 137 SGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           SG+   G         FR M+ + V LDH++F S++  C    D+++ R++H   +K G+
Sbjct: 248 SGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGY 307

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                V + L+  Y KCG +E  + VF ++  R++V W  M+S        D A+++F  
Sbjct: 308 ESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLN 362

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR +G+  +  TF  L+N+       K G +IHGL IK  F  +  V  S + +YAK   
Sbjct: 363 MRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEA 422

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA + F+ +T + ++SWN M+ GF QNG   EA+K+       +  P+E T  S+L++
Sbjct: 423 LEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNA 481

Query: 374 CG-SLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
              +  IS +  Q  HA+ +K G+ +   + +AL++ Y+K G+I  + + F  + + +  
Sbjct: 482 IAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQF 541

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            WTSII AY+ HG  +  + +F KM+   V PD + FL VL+AC+  G+V +G   FN+M
Sbjct: 542 VWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMM 601

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           I  Y++ P  EHY+C+ D+LGR G L EA +L++ +P  P    L + +G+C++HG++ +
Sbjct: 602 IEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKM 661

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
               AE  +E++P    +Y  + N+YA +  W   A +RK MR     K  G SWI++  
Sbjct: 662 GAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGD 721

Query: 612 -----EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV 651
                 +  F S D+SHP++  +Y M+  + GL  E N+ G   V
Sbjct: 722 TEGSLTMQGFSSGDKSHPKSDEIYRMV-EIIGL--EMNLEGKVAV 763



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 215/410 (52%), Gaps = 12/410 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + A  G L++G Q+H      G  + + + N V+ +Y K   FD+   +F+ +   ++
Sbjct: 83  LALKACRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDV 142

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           V+WNT++SG  +       +  RM    V  D  T+++ L  CV ++   +G +L S ++
Sbjct: 143 VSWNTILSGFDD-NQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVV 201

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-CLGDGAI 248
           K G   +  V ++ + +Y + G    ARRVFDE+  +D++ WN ++S  +     G  A+
Sbjct: 202 KTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAV 261

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M  EG++ D+ +F+S++ +C      KL RQIHGL IK+ ++  + V   L+  Y
Sbjct: 262 VIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRY 321

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           +K G ++    VF  M+ +NVVSW TM+     N D  +AV +  +M      P+EVT  
Sbjct: 322 SKCGVLEAVKSVFHQMSERNVVSWTTMI---SSNKD--DAVSIFLNMRFDGVYPNEVTFV 376

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
            ++++        E  ++H   IK G  +  S+ N+ I  Y+K  ++  A + F  +   
Sbjct: 377 GLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFR 436

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR--PDSIAFLEVLSACS 476
           ++++W ++I  +A +G S E++++F   LS A    P+   F  VL+A +
Sbjct: 437 EIISWNAMISGFAQNGFSHEALKMF---LSAAAETMPNEYTFGSVLNAIA 483



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 183/336 (54%), Gaps = 15/336 (4%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D +T    L+AC    D++ G ++H F    GF     VS+A++ +Y K G  ++A  +
Sbjct: 76  MDEVTLCLALKAC--RGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 133

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE--GMKGDYFTFSSLVNSCGTLG 277
           F+ ++  D+V WN ++S +      D  IA+  ++R++  G+  D FT+S+ ++ C    
Sbjct: 134 FENLVDPDVVSWNTILSGF-----DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSE 188

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
              LG Q+   V+K   + D++V  S + MY+++G+   A RVFD M+ K+++SWN+++ 
Sbjct: 189 GFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLS 248

Query: 338 GFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
           G  Q G  G EAV + RDM++     D V+  S++++C   +     RQ+H   IK G +
Sbjct: 249 GLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYE 308

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + L + N L++ YSKCG +      F  + E ++V+WT++I +        +++ +F  M
Sbjct: 309 SLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSN-----KDDAVSIFLNM 363

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
               V P+ + F+ +++A      + EGL+   L I
Sbjct: 364 RFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCI 399


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 204/643 (31%), Positives = 342/643 (53%), Gaps = 21/643 (3%)

Query: 1   MLSRCPAPPIFTVHF-----KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTI 55
           M  RC AP      F     + P+S+ +          + N +  D   L S +  SGT 
Sbjct: 95  MYGRCAAPDSARQVFDEMPARNPVSWASVI-----AAHVQNGRAGDALGLFSSMLRSGT- 148

Query: 56  HESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
                +A  F    A++   + G +  G+Q+H+H +K    + L +QN ++ +Y K    
Sbjct: 149 -----AADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 203

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR-LDHITFNSLLRA 171
           DD   LF+ ++ +++++W ++I+G    G  +     FR+M+++     +   F S  RA
Sbjct: 204 DDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRA 263

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C      E G ++H   +K     + +V  +L D+Y +   ++ AR  F  +   DLV W
Sbjct: 264 CGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSW 323

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +V+ Y++  L   A+ +F+ MR  G++ D  T   L+ +C    +   GR IH  ++K
Sbjct: 324 NSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK 383

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
              D DV V  SL+ MYA+  ++  A  VF  +  ++VV+WN+++    Q+    E +KL
Sbjct: 384 LGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKL 443

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              + +     D ++L ++LS+   L      +QVHAYA K G+     + N LI+ Y+K
Sbjct: 444 FSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAK 503

Query: 412 CGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           CGS+  A++ F  +    D+ +W+S+I  YA  G +KE++++F +M S  +RP+ + F+ 
Sbjct: 504 CGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIG 563

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL+ACS  G V+EG  Y+++M  +Y I+P  EH +C+ DLL R G L EA + +  MP E
Sbjct: 564 VLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFE 623

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P        + A K+H  + + K AAE +L ++PS    Y L+ N+YA+   W + ARL+
Sbjct: 624 PDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLK 683

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K MR +   K PG SW+++ GE+  F+  DRSHP++  +YAML
Sbjct: 684 KAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 726



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/479 (30%), Positives = 237/479 (49%), Gaps = 25/479 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIM-------KLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           Y+  +   ++   L QG+++H H++          L     L N ++ +Y +C A D   
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 119 KLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           ++FDEM  RN V+W ++I+  +  G  G+    F  ML      D     S +RAC +  
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D+  GR++H+  LK   G +  V +ALV +Y K G V+D   +F+ +  +DL+ W  +++
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 237 CYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
            +A       A+ VF  M +EG    + F F S   +CG +GS + G QIHGL IK   D
Sbjct: 227 GFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D+ V  SL DMYA+  N+D A   F  + A ++VSWN++V  +   G   EA+ L  +M
Sbjct: 287 RDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 PD +T+  +L +C         R +H+Y +K G+   +S+ N+L++ Y++C  +
Sbjct: 347 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 406

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           + A+  F  +K+ D+VTW SI+ A A H   +E +++F  +       D I+   VLSA 
Sbjct: 407 SSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSA- 465

Query: 476 SHGGLVSEGLRYFNLMISDYH-------ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
                 S  L YF  M+   H       ++ D      L D   + G L +A  L   M
Sbjct: 466 ------SAELGYFE-MVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/592 (33%), Positives = 313/592 (52%), Gaps = 38/592 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-N 128
           L+  +    L  GK +H + +K+ L   + +   ++ +Y KCK   + E LF  +  R N
Sbjct: 141 LRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKN 200

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            V W  +++G    G ++     F+ M    +  +H TF S+L AC        GR++H 
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHG 260

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            I+  GFG N +V SALVD+Y KCG +  AR + D +   D+V WN M+     +   + 
Sbjct: 261 CIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEE 320

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F+ M    ++ D FT+ S++ S  +  + K+G  +H L IK  FD    V+ +LVD
Sbjct: 321 ALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVD 380

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK GN+  A  VF+ +  K+V+SW ++V G+  NG   +A++L  DM       D+  
Sbjct: 381 MYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFV 440

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +A + S+C  L++    RQVHA  IK+   + LS EN+LI  Y+KCG +  A++ F S++
Sbjct: 441 VACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSME 500

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++++WT+II  YA                                     GLV  G  
Sbjct: 501 TRNVISWTAIIVGYA-----------------------------------QNGLVETGQS 525

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF  M   Y I P S+HY C+ DLLGR G + EA  LL  M +EP +    + + AC+VH
Sbjct: 526 YFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVH 585

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G++ L + A + L++LEPS  + Y L+SN+++    W D A +R+ M+    +K PG SW
Sbjct: 586 GNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSW 645

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           IE+  ++HTF+S DRSHP A  +Y+ +  +  L++E       N   ++MDE
Sbjct: 646 IEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDE 697



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 167/323 (51%), Gaps = 11/323 (3%)

Query: 27  YQNQTTTITNAQKHDRSVLSSQ----LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQG 82
           Y   T  +T   ++  S+ + Q    +RN G   ES H        A    + + F   G
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGM--ESNHFTFPSILTACTSISAYAF---G 255

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +Q+H  I+  G    + +Q+ ++ +Y KC        + D M + ++V WN++I G +  
Sbjct: 256 RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTH 315

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        F +M   ++R+D  T+ S+L++     ++++G  +HS  +K GF     VS
Sbjct: 316 GYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVS 375

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +ALVD+Y K G +  A  VF+++L +D++ W  +V+ Y  N   + A+ +F  MR   + 
Sbjct: 376 NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVD 435

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D F  + + ++C  L   + GRQ+H   IK S    +    SL+ MYAK G ++DA RV
Sbjct: 436 LDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRV 495

Query: 321 FDGMTAKNVVSWNTMVVGFGQNG 343
           FD M  +NV+SW  ++VG+ QNG
Sbjct: 496 FDSMETRNVISWTAIIVGYAQNG 518



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 145/273 (53%), Gaps = 1/273 (0%)

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           ++  Y   G + +AR++F+E   ++ + W+ +VS Y  N      +  F+ M  +G K  
Sbjct: 74  MISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
            +T  S++ +C TL     G+ IH   IK   + ++ VAT LVDMY+K   + +A  +F 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 323 GMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
            +   KN V W  M+ G+ QNG+  +A++  ++M       +  T  SIL++C S+S   
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQVH   I +G    + +++AL++ Y+KCG +A A     +++  D+V W S+I    
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
            HG  +E++ +F KM +  +R D   +  VL +
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKS 346



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 127/247 (51%), Gaps = 7/247 (2%)

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++  YA  GN+ +A ++F+    KN ++W+++V G+ +NG   E ++    M      P 
Sbjct: 74  MISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           + TL S+L +C +LS+    + +H YAIK  ++A + +   L++ YSKC  +  A   F 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 424 SVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
           S+ +  + V WT+++  YA +G S ++I+ F++M +  +  +   F  +L+AC+     +
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GAFI 540
            G +    +I      P+    + L D+  + G L  A  +L +M I+   D +   + I
Sbjct: 254 FGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARMILDTMEID---DVVCWNSMI 309

Query: 541 GACKVHG 547
             C  HG
Sbjct: 310 VGCVTHG 316


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 317/596 (53%), Gaps = 9/596 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+   L+ G QLH+ +MKLG  +   L N ++ +Y KC       ++FD M  RN+
Sbjct: 207 LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 266

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W  L+ G ++ G        F  M       +  T ++ L+AC        G ++H  
Sbjct: 267 VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC--GGGTRAGVQIHGV 324

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            ++ GF  +  V+++LV +Y K  +  DARRVFD +  R+L  WN M+S YA    G  +
Sbjct: 325 CVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDS 384

Query: 248 IAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ--SFDLDVLVATSL 304
           + VF  M R    + D FTF+SL+ +C  LG+++ G Q+H  +  +  S   + ++A +L
Sbjct: 385 LLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGAL 444

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+Y K   +  A +VFDG+  +N + W T++VG  Q G  +EA+ L R         D 
Sbjct: 445 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 504

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
             L+S+++     ++  + +QVH Y  K      +S+ N+L++ Y KCG    A + F  
Sbjct: 505 HVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFRE 564

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   ++V+WT++I     HG  +E+I++FE+M +  V  D +A+L +LSACSH GLV E 
Sbjct: 565 MPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDEC 624

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            RYF+ +  D  + P +EHY C+ DLLGR G L EA +L+ SMP+EP        + AC+
Sbjct: 625 RRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACR 684

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH  + + +   + LL ++   PVNY ++SN+ A    W +   +R  MR     K  GC
Sbjct: 685 VHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGC 744

Query: 605 SWIEIAGEIHTFV-SSDRSHPQAVHMYAMLCTVFGLMEEN-NVSGHCNVLDKEMDE 658
           SW E+  E+H F    D +HPQA  +   L  V   M E    SG       ++DE
Sbjct: 745 SWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDE 800



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 17/381 (4%)

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           RRM+ D           LLRA  +   +  G +LH+ ++K+GFG +  +++ L+D+Y KC
Sbjct: 200 RRMIAD-----------LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKC 248

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +  A  VFD +  R++V W  ++  +  +      + +F  MR  G   + FT S+ +
Sbjct: 249 GKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATL 308

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +CG  G ++ G QIHG+ ++  F+   +VA SLV MY+K     DA RVFD + ++N+ 
Sbjct: 309 KACG--GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLA 366

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           +WN+M+ G+   G GR+++ + R+M +     PDE T AS+L +C  L  + E  QVHA 
Sbjct: 367 TWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAA 426

Query: 390 AIKNGVQAFLS--IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
               GV    +  +  AL++ Y KC  +  A+Q F  ++  + + WT++I  +A  G  K
Sbjct: 427 MAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVK 486

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           E++ +F +  S  VR D      V++  +   LV +G +  +   +      D      L
Sbjct: 487 EAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQG-KQVHCYTAKTPAGLDVSVANSL 545

Query: 508 TDLLGRVGLLVEAYDLLASMP 528
            D+  + GL  EA      MP
Sbjct: 546 VDMYLKCGLTGEAGRRFREMP 566



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 16  KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAK 75
           +  + + T  +   Q   +  A    R   SS +R  G +           S  + V A 
Sbjct: 467 RNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHV----------LSSVVAVFAD 516

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           F  ++QGKQ+H +  K      +S+ N ++ +Y+KC    +  + F EM  RN+V+W  +
Sbjct: 517 FALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 576

Query: 136 ISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK-VG 192
           I+G+     G      F  M  + V  D + + +LL AC  +  ++  RR  S I +   
Sbjct: 577 INGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 636

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS 236
                   + +VDL G+ G + +A+ +   +     V +W  ++S
Sbjct: 637 MRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLS 681


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 278/468 (59%), Gaps = 1/468 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++S++ AC Q  ++   R +H+ + +     + F+ ++L+ +Y KCG V DAR VFD++ 
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+V W  +++ YA N +   AI +   M     + + FTF+SL+ + G  G   +G Q
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H L +K ++D DV V ++L+DMYA+   +D A  VFD + +KN VSWN ++ GF +  D
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKAD 242

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G   +    +M +  F     T +S+ S+   +    + R VHA+ IK+G +    + N 
Sbjct: 243 GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT 302

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           ++  Y+K GS+  A + F  + + DLVTW +++ A A +GL KE++  FE++    ++ +
Sbjct: 303 MLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLN 362

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I FL VL+ACSHGGLV EG  YF++M  DY++ P+ +HY    DLLGR GLL EA   +
Sbjct: 363 QITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFV 421

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP+EP +   GA +GAC++H +  + ++AA+ + EL+P       L+ N+YAS   W 
Sbjct: 422 FKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWN 481

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           D AR+RKMM+     K P CSW++I   +H FV+ D +HP++  +Y M
Sbjct: 482 DAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRM 529



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 195/389 (50%), Gaps = 9/389 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y   +   A+F  L   + +H+H+ +  L     L N ++H+Y KC A  D   +FD+M
Sbjct: 62  LYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKM 121

Query: 125 RVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             R++V+W  LI+G      N  P         ML    R +  TF SLL+A        
Sbjct: 122 PSRDVVSWTYLIAGYAQ---NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCS 178

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +G ++H+  +K  +  + +V SAL+D+Y +C  ++ A  VFD ++ ++ V WN +++ +A
Sbjct: 179 IGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFA 238

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
               G+  +  F  M+  G    +FT+SS+ ++   +G+ + GR +H  +IK    L   
Sbjct: 239 RKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAF 298

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +++ MYAK+G++ DA +VFD M  +++V+WNTM+    Q G G+EAV    ++ +  
Sbjct: 299 VGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG 358

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              +++T  S+L++C    +  E +          VQ  +    + ++   + G +  AL
Sbjct: 359 IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 418

Query: 420 Q-CFGSVKEPDLVTWTSIIGAYAFHGLSK 447
              F    EP    W +++GA   H  +K
Sbjct: 419 IFVFKMPMEPTAAVWGALLGACRMHKNAK 447



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 119/273 (43%), Gaps = 41/273 (15%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  YS      A+ G L+QG+ +H+H++K G      + N +L +Y K  +  D  K+
Sbjct: 260 ATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKV 319

Query: 121 FDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD M  R++VTWNT+++ +     G     +F  +    ++L+ ITF S+L AC     +
Sbjct: 320 FDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLV 379

Query: 179 EVGRRLHSFILKVGFGLNCFVSS--ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           + G+  H F +   + +   +    + VDL G+ G +++A                    
Sbjct: 380 KEGK--HYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEA-------------------- 417

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
                      I VF +     M+     + +L+ +C    ++K+G+     V +   D 
Sbjct: 418 ----------LIFVFKM----PMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD- 462

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           D      L ++YA  G  +DA RV   M A  V
Sbjct: 463 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGV 495



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 7/206 (3%)

Query: 354 DMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           D+L  G   P      SI+++C         R +HA+  ++ +     + N+LI+ Y KC
Sbjct: 49  DLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKC 108

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G+++ A   F  +   D+V+WT +I  YA + +  E+I +   ML    RP+   F  +L
Sbjct: 109 GAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLL 168

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR---VGLLVEAYDLLASMPI 529
            A    G  S G +   L +  Y+   D    + L D+  R   + + +  +D L S   
Sbjct: 169 KATGACGGCSIGEQMHALAVK-YNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNE 227

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWA 555
              +  +  F  A K  G   L K+A
Sbjct: 228 VSWNALIAGF--ARKADGETTLMKFA 251


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 330/570 (57%), Gaps = 14/570 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN-IVTWNTLISGI 139
           QG   H +I + G    LS+QN +L +Y +   +    KLF EM VRN +V+W+ +I G 
Sbjct: 166 QGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMYF-AHKLFGEMSVRNDVVSWSVMIGGF 224

Query: 140 INCGGNVTPY--FRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +  G +   +  FR M+ +  +  D +T  S+L+AC    DI +G  +H  ++  G   +
Sbjct: 225 VQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDD 284

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV ++L+D+Y KC  V  A + F E+  ++++ WN+M+S Y LN     A+A+   M  
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG + D  T ++++        S   R +HG++I++ ++ + L+  S++D YAK   ++ 
Sbjct: 345 EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVEL 404

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VFDGM  K+VV+W+TM+ GF +NG   EA+ + + M +    P+ V++ +++ +C  
Sbjct: 405 ARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNE-EVIPNNVSIMNLMEAC-- 461

Query: 377 LSISCETRQ---VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            ++S E RQ    H  A++ G+ + + I  ++I+ YSKCG I  +++ F  + + ++V W
Sbjct: 462 -AVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCW 520

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           +++I A+  +GL+ E++ +FEK+  +  +P+++  L +LSACSHGGL+ EGL +F  M+ 
Sbjct: 521 SAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQ 580

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP--IEPRSDTLGAFIGACKVHGSIGL 551
            + I P  EHY+C+ D+L R G   EA +L+  +P  +E  +   G  + +C+ +G+I L
Sbjct: 581 KHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISL 640

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
              AA ++L+LEP     Y L SN+YA+     D A++R++ ++     V G S + I  
Sbjct: 641 GSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINS 700

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           +   FV+ D  +P+A  +Y M+  + G+M+
Sbjct: 701 QTWRFVAGDVLNPRADEIYLMVKKLHGVMK 730



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 207/399 (51%), Gaps = 6/399 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H  ++K G  +  S+ N  +  Y+K    D  ++ FD  + ++ V+WN ++ G  +
Sbjct: 66  GTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFS 125

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G  +    +F +    + + +  +   +++A  +      G   H +I + GF     V
Sbjct: 126 NGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSV 185

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVF-NLMRLE 257
            ++L+ LY +   +  A ++F E+  R D+V W+VM+  +      +    +F N++   
Sbjct: 186 QNSLLSLYAEV-HMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEA 244

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D  T  S++ +C  L    LG  +HGLVI +  + D+ V  SL+DMY+K  N+  A
Sbjct: 245 GIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSA 304

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            + F  +  KN++SWN M+  +  N    EA+ LL  M++     DEVTLA++L      
Sbjct: 305 FKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHF 364

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
             S + R VH   I+ G ++   + N++I+AY+KC  +  A   F  + + D+V W+++I
Sbjct: 365 LDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMI 424

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             +A +G   E+I VF++M +  V P++++ + ++ AC+
Sbjct: 425 AGFARNGKPDEAISVFKQM-NEEVIPNNVSIMNLMEACA 462



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 181/358 (50%), Gaps = 12/358 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK       +  G  +H  ++  GL + L + N ++ +Y KC       K F E+  +NI
Sbjct: 257 LKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNI 316

Query: 130 VTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WN ++S  I    ++        M+ +    D +T  ++L+      D    R +H  
Sbjct: 317 ISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGV 376

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I++ G+  N  + ++++D Y KC  VE AR VFD +  +D+V W+ M++ +A N   D A
Sbjct: 377 IIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEA 436

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           I+VF  M  E +  +  +  +L+ +C      +  +  HG+ +++    +V + TS++DM
Sbjct: 437 ISVFKQMNEEVIPNN-VSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDM 495

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G+I+ + R F+ +  KNVV W+ M+  F  NG   EA+ L   + Q    P+ VT 
Sbjct: 496 YSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTA 555

Query: 368 ASILSSC--GSL---SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            S+LS+C  G L    +S  T  V  + I+ G++ +    + +++  S+ G    AL+
Sbjct: 556 LSLLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHY----SCIVDMLSRAGKFNEALE 609



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 152/319 (47%), Gaps = 4/319 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D     S+L+AC       +G  +H  ++K G   +  ++++ +D Y K G ++ A+R F
Sbjct: 47  DTWVLPSILKACSNTS-FNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAF 105

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D    +D V WNVMV     N      +  F   R    + +  +   ++ +   L    
Sbjct: 106 DSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYS 165

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN-VVSWNTMVVGF 339
            G   HG + +  F   + V  SL+ +YA+  ++  A ++F  M+ +N VVSW+ M+ GF
Sbjct: 166 QGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAHKLFGEMSVRNDVVSWSVMIGGF 224

Query: 340 GQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            Q G+  +   + R+M+ +    PD VT+ S+L +C +L        VH   I  G++  
Sbjct: 225 VQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDD 284

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L + N+LI+ YSKC ++  A + F  + E ++++W  ++ AY  +    E++ +   M+ 
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 459 HAVRPDSIAFLEVLSACSH 477
                D +    VL    H
Sbjct: 345 EGAEKDEVTLANVLQIAKH 363



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 5/249 (2%)

Query: 247 AIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           A+ +++ +R+ G +  D +   S++ +C    S  LG  +HG +IKQ       +A S +
Sbjct: 31  ALQLYHEIRISGAQLSDTWVLPSILKACSNT-SFNLGTAMHGCLIKQGCQSSTSIANSTI 89

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D Y K G++D A R FD    K+ VSWN MV G   NG     +          F P+  
Sbjct: 90  DFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNIS 149

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           +L  ++ +   L I  +    H Y  ++G  A LS++N+L++ Y++   +  A + FG +
Sbjct: 150 SLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAHKLFGEM 208

Query: 426 K-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSE 483
               D+V+W+ +IG +   G  ++   +F  M++ A + PD +  + VL AC++   +S 
Sbjct: 209 SVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISL 268

Query: 484 GLRYFNLMI 492
           G     L+I
Sbjct: 269 GTMVHGLVI 277


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 185/579 (31%), Positives = 317/579 (54%), Gaps = 6/579 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A++  A+ G L+ GKQ+H   +K      L + N +L++Y    + +   +LF+ +  R+
Sbjct: 261 AVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRD 320

Query: 129 IVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRRLH 185
              WN++IS      C       F RM  + V+ D  T   +L  C + A  +  G+ LH
Sbjct: 321 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLH 380

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + ++K G  ++  + +AL+ +Y +   VE  +++FD +   D++ WN M+   A N L  
Sbjct: 381 AHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA 440

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A  +F  MR   +K + +T  S++ +C  +     GR IHG V+K S +++  + T+L 
Sbjct: 441 QACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALA 500

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY   G+   A  +F+G   ++++SWN M+  + +N    +A+ L   M+  +  P+ V
Sbjct: 501 DMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEAE-PNSV 559

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFL--SIENALINAYSKCGSIAGALQCFG 423
           T+ ++LSS   L+   + + +HAY  + G    L  S+ NA I  Y++CGS+  A   F 
Sbjct: 560 TIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFK 619

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           ++ + ++++W ++I  Y  +G   +++  F +ML    RP+ + F+ VLSACSH G +  
Sbjct: 620 TLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEM 679

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL+ F+ M+ D+++ P+  HY+C+ DLL R G + EA + + SMPIEP +    A + +C
Sbjct: 680 GLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSC 739

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           + +     AK   EKL +LEP    NY L+SNVYA+   W +V R+R  +++    K PG
Sbjct: 740 RAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPG 799

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            SWI +  ++H F + DRSHPQ+  +YA L  +   M E
Sbjct: 800 ISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRE 838



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 256/501 (51%), Gaps = 23/501 (4%)

Query: 39  KHDRSVLS--SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN 96
           K+D+++LS  +Q+ + G +  +T          LK  A    +++GK +H  I    L +
Sbjct: 32  KNDQAILSAYTQMESLGVLPNNTT-----LPLVLKACAAQNAVERGKSIHRSIQGTDLMD 86

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRML 154
            + +   V+  Y KC   +D   +FD M  R++V WN ++ G +   C        R M 
Sbjct: 87  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMG 146

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFV 213
            +N+R +  T  +LL AC  A ++ +GR +H + L+ G F  N  V++AL+  Y +    
Sbjct: 147 RENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF--- 203

Query: 214 EDAR---RVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSS 268
            D R    +FD ++ R++V WN M+S Y    +GD   A+ +F  M ++ +K D  T   
Sbjct: 204 -DMRVLPLLFDLMVVRNIVSWNAMISGYY--DVGDYFKALELFVQMLVDEVKFDCVTMLV 260

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            V +C  LGS KLG+QIH L IK  F  D+ +  +L++MY+ NG+++ + ++F+ +  ++
Sbjct: 261 AVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRD 320

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS-CETRQVH 387
              WN+M+  +   G   EA+ L   M       DE T+  +LS C  L+    + + +H
Sbjct: 321 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLH 380

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A+ IK+G++   S+ NAL++ Y++   +    + F  +K  D+++W ++I A A + L  
Sbjct: 381 AHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA 440

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           ++ E+FE+M    ++P+S   + +L+AC     +  G R  +  +  + I  +    T L
Sbjct: 441 QACELFERMRESEIKPNSYTIISILAACEDVTCLDFG-RSIHGYVMKHSIEINQPLRTAL 499

Query: 508 TDLLGRVGLLVEAYDLLASMP 528
            D+    G    A DL    P
Sbjct: 500 ADMYMNCGDEATARDLFEGCP 520



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 220/460 (47%), Gaps = 40/460 (8%)

Query: 123 EMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           ++++++   WN++I    N   +  +   + +M    V  ++ T   +L+AC   + +E 
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-A 239
           G+ +H  I       +  V +A+VD Y KCGFVEDAR VFD +  RD+VLWN MV  Y  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDV 298
             C  +  + V  + R E ++ +  T  +L+ +C      +LGR +HG  ++   FD + 
Sbjct: 132 WGCYEEAMLLVREMGR-ENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP 190

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            VAT+L+  Y +  ++     +FD M  +N+VSWN M+ G+   GD  +A++L   ML  
Sbjct: 191 HVATALIGFYLR-FDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVD 249

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               D VT+   + +C  L      +Q+H  AIK      L I NAL+N YS  GS+  +
Sbjct: 250 EVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESS 309

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-- 476
            Q F SV   D   W S+I AYA  G  +E++++F +M S  V+ D    + +LS C   
Sbjct: 310 HQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEEL 369

Query: 477 ----------HGGLVSEGLR----YFNLMISDYHILPDSEHYTCLTD------------- 509
                     H  ++  G+R      N ++S Y  L   E    + D             
Sbjct: 370 ASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTM 429

Query: 510 --LLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACK 544
              L R  L  +A +L   M    I+P S T+ + + AC+
Sbjct: 430 ILALARNTLRAQACELFERMRESEIKPNSYTIISILAACE 469


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 292/535 (54%), Gaps = 2/535 (0%)

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYF 150
           G  + L+L N ++++Y KC    D  +LF  +  R+IV+WN+L+S     G    +    
Sbjct: 177 GFESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLL 236

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           + M +++++ D  TF S L A     D+ +G+ +H  +LK G  ++  V SALV LY +C
Sbjct: 237 QAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRC 296

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
             ++ A +VF     +D+V+W  M+S    N   D A+ VF  M    +K    T +S +
Sbjct: 297 RCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGL 356

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +C  LG   +G  IHG V++Q   LD+    SLV MYAK   +  +C +F+ M  K++V
Sbjct: 357 AACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLV 416

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SWN +V G  +NG   + +    +M +    PD +T+ S+L +CGS    C+ + +H + 
Sbjct: 417 SWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFV 476

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +++ +   +  E AL++ Y KCG++  A +CF  + + DLV W+++I  Y F+G  + ++
Sbjct: 477 LRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIAL 536

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
             + + L   + P+ + F+ VLSACSHGGL+S+GL  +  M  D+ + P+ EH  C+ DL
Sbjct: 537 RKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDL 596

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           L R G + EAY     M  EP    LG  + AC+V+G + L K  A  + EL+P  P N+
Sbjct: 597 LSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNF 656

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
             ++N YAS   W  V +    MR     K PG S IE+ G   TF +S  SHP+
Sbjct: 657 VQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVHGTTFTFFASHNSHPK 711



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 237/470 (50%), Gaps = 12/470 (2%)

Query: 57  ESTHS---AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           + TH+   A++F S   K          G  LH  ++  GL +   + + ++  Y K   
Sbjct: 41  QKTHTQLDAYTFPS-LFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGC 99

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT---PYFRRMLLDNVRLDHITFNSLLR 170
                K+FD M  RN+V W T+I G  +  G++      F++M    ++   +T  SLL 
Sbjct: 100 IHLGRKVFDTMLKRNVVPWTTII-GSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
              +   + +   LH  I+  GF  +  +S+++V++YGKCG + DARR+F  + CRD+V 
Sbjct: 159 GISK---LPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVS 215

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN ++S Y+     +  + +   M++E +K D  TF S +++    G  +LG+ +HGL++
Sbjct: 216 WNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLML 275

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K   ++D  V ++LV +Y +   +D A +VF   T K+VV W  M+ G  QN    +A+ 
Sbjct: 276 KDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALG 335

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           +   M++ +  P   TLAS L++C  L        +H Y ++ G+   +  +N+L+  Y+
Sbjct: 336 VFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYA 395

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KC  +  +   F  + E DLV+W +I+  +A +G   + I  F +M    +RPDSI    
Sbjct: 396 KCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTS 455

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           +L AC   G + +G    N ++    ++P     T L D+  + G L  A
Sbjct: 456 LLQACGSAGALCQGKWIHNFVLRS-SLIPCIMTETALVDMYFKCGNLENA 504



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 184/356 (51%), Gaps = 15/356 (4%)

Query: 131 TWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           ++N+L+S +   G +  V   +  M   + +LD  TF SL +AC   +    G  LH  +
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +  G   + ++ S+L+  Y K G +   R+VFD +L R++V W  ++  Y+     D A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQIHGLVIKQSFDLDVLVATSLVD 306
           ++F  MR  G++    T  SL+      G SKL     +H L+I   F+ D+ ++ S+V+
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLP-----GISKLPLLLCLHCLIILHGFESDLALSNSMVN 190

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K G I DA R+F  +  +++VSWN+++  + + G   E ++LL+ M      PD+ T
Sbjct: 191 MYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQT 250

Query: 367 LASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             S LS+    G L +    + VH   +K+G+     +E+AL+  Y +C  +  A + F 
Sbjct: 251 FCSALSASAIKGDLRLG---KLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFK 307

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           S  E D+V WT++I     +  + +++ VF +M+   V+P +      L+AC+  G
Sbjct: 308 STTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLG 363


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 178/470 (37%), Positives = 290/470 (61%), Gaps = 2/470 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           F  +L+ C +   +   +  H   +++    +  +S+ L++ Y KCGFVE AR+VFD +L
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R LV WN M+  Y  N +   A+ +F  MR EG K   FT SS++++CG    +   ++
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H L +K S DL++ V T+L+D+YAK G I+DA +VF+ M  K+ V+W++MV G+ Q+ +
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA+ L R   + S   ++ TL+S++ +C +L+   E +Q+HA   K+G  + + + ++
Sbjct: 246 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASS 305

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
            ++ Y+KCGS+  +   F  V+E ++  W +II  +A H   KE + +FEKM    + P+
Sbjct: 306 AVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPN 365

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + F  +LS C H GLV EG R+F LM + Y + P+  HY+C+ D+LGR GLL EAY+L+
Sbjct: 366 EVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI 425

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            S+P EP +   G+ + +C+V  ++ LA+ AA+KL ELEP    N+ L+SN+YA+ + W 
Sbjct: 426 KSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWE 485

Query: 585 DVARLRKMMRDNCD-HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           ++A+ RK++RD CD  KV G SWI+I  ++H F   + SHP+   +  ML
Sbjct: 486 EIAKSRKLLRD-CDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTML 534



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 196/382 (51%), Gaps = 12/382 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           + + L++ A+ G + + K  H   M++ L   ++L N +++ Y KC   +   ++FD M 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNT+I               F  M  +  +    T +S+L AC    D    ++
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH   +K    LN +V +AL+DLY KCG + DA +VF+ +  +  V W+ MV+ Y  +  
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ ++   +   ++ + FT SS++ +C  L +   G+Q+H ++ K  F  +V VA+S
Sbjct: 246 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASS 305

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            VDMYAK G++ ++  +F  +  KN+  WNT++ GF ++   +E + L   M Q    P+
Sbjct: 306 AVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPN 365

Query: 364 EVTLASILSSCGSLSISCETRQVH-----AYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           EVT +S+LS CG   +  E R+        Y +   V  +    + +++   + G ++ A
Sbjct: 366 EVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHY----SCMVDILGRAGLLSEA 421

Query: 419 LQCFGSVK-EPDLVTWTSIIGA 439
            +   S+  EP    W S++ +
Sbjct: 422 YELIKSIPFEPTASIWGSLLAS 443


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 306/565 (54%), Gaps = 2/565 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+Q+H  ++K+   +   +   +L +Y K  + +D +K+FD++  + +   N +IS 
Sbjct: 260 LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 319

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            I  G   +    + +M      +D  T +SLL  C      + GR +H+ ++K     N
Sbjct: 320 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 379

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + SAL+ +Y KCG  EDA  VF  +  RD+V W  M++ +  N     A+ +F  M  
Sbjct: 380 VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 439

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG+K D    +S++++   L + +LG  IHG  IK+  + DV VA SLVDMY+K G  + 
Sbjct: 440 EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAES 499

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  KN+V+WN+M+  +  NG    ++ LL  +LQ  F  D V++ ++L +  S
Sbjct: 500 AEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSS 559

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           ++   + + +HAY I+  + + L +ENALI+ Y KCG +  A   F ++   +LVTW S+
Sbjct: 560 VAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSM 619

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  Y  HG  +E++ +F++M      PD + FL ++++CSH G+V EGL  F LM  +Y 
Sbjct: 620 IAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYG 679

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           + P  EHY  + DLLGR G L +AY  +  MPI+         + AC+ H ++ L +  A
Sbjct: 680 VEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVA 739

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           + LL++EP++  NY  + N+Y     W   A LR  M+     K PGCSWIE+   +  F
Sbjct: 740 DNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVF 799

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLME 641
            S D S  + + +Y  L ++   ME
Sbjct: 800 FSGDSSSTRRIEIYKTLSSLKSNME 824



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 255/530 (48%), Gaps = 36/530 (6%)

Query: 13  VHFKRPLSYLTPALYQNQTTTITNAQKH---DRSVLSSQLR-NSGTIHESTHSAHSFYSQ 68
           +HF + +S    +L Q + +   N++      +   S  L  +S T H +  +A   +  
Sbjct: 1   MHFNQFISRKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPS 60

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--- 125
            LK  A    L  G+ +H+ I+ +GL +   +   ++++YVKC       ++FD+M    
Sbjct: 61  LLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESR 120

Query: 126 --VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
               +I  WN +I G    G     +F   L    R+  +++               GR+
Sbjct: 121 DSAPDITVWNPVIDGYFKYG-----HFEEGLAQFCRMQELSW------------YMAGRQ 163

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALNC 242
           +H +I++  F  + ++ +AL+ +Y  C    +A  +F ++  R ++V WNVM+  +  N 
Sbjct: 164 IHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENG 223

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           + + ++ +++L + E  K    +F+    +C        GRQ+H  VIK +F  D  V T
Sbjct: 224 MWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCT 283

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+ MYAK+G+++DA +VFD +  K V   N M+  F  NG   +A+ L   M  G    
Sbjct: 284 SLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPV 343

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T++S+LS C  +      R VHA  IK  +Q+ ++I++AL+  Y KCGS   A   F
Sbjct: 344 DSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVF 403

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            ++KE D+V W S+I  +  +   K+++++F  M    V+ DS     V+SA    GL  
Sbjct: 404 YTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA----GLGL 459

Query: 483 EGLRYFNLMISDYHI---LPDSEHYTC-LTDLLGRVGLLVEAYDLLASMP 528
           E +   +L I  + I   L       C L D+  + G    A  + +SMP
Sbjct: 460 ENVELGHL-IHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP 508


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/543 (32%), Positives = 319/543 (58%), Gaps = 5/543 (0%)

Query: 82  GKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
            + +H + +K+GL    + + N ++ VY KC +    +K+FDE+  RN+++WN +I+   
Sbjct: 259 ARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFS 318

Query: 141 NCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G   +    FR M+ + +R + +T +S+L    +    ++G  +H F LK+    + F
Sbjct: 319 FRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVF 378

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           +S++L+D+Y K G    A  +F+++  R++V WN M++ +A N L   A+ +   M+ +G
Sbjct: 379 ISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKG 438

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
              +  TF++++ +C  LG   +G++IH  +I+    LD+ V+ +L DMY+K G ++ A 
Sbjct: 439 ETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQ 498

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF+ ++ ++ VS+N +++G+ +  D  E+++L  +M      PD V+   ++S+C +L+
Sbjct: 499 NVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLA 557

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + +++H   ++      L + N+L++ Y++CG I  A + F  ++  D+ +W ++I 
Sbjct: 558 FIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMIL 617

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            Y   G    +I +FE M    V  DS++F+ VLSACSHGGL+ +G +YF +M  D +I 
Sbjct: 618 GYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMM-CDLNIE 676

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P   HY C+ DLLGR GL+ EA DL+  + I P ++  GA +GAC++HG+I L  WAAE 
Sbjct: 677 PTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEH 736

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L EL+P     Y L+SN+YA    W +  ++R++M+     K PGCSW+++   +H F+ 
Sbjct: 737 LFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLV 796

Query: 619 SDR 621
            ++
Sbjct: 797 GEK 799



 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 246/433 (56%), Gaps = 8/433 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LKV + F  +++G+++H    KLG    + + N +L  Y  C  F D  K+FDEM 
Sbjct: 140 YPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMP 199

Query: 126 VRNIVTWNTLISGIINCGG---NVTPYFRRMLL--DNVRLDHITFNSLLRACVQADDIEV 180
            R+ V+WNT+I G+ +  G       +FR M+     ++ D +T  S+L  C + +D  +
Sbjct: 200 ERDKVSWNTVI-GLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVM 258

Query: 181 GRRLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            R +H + LKVG  G +  V +ALVD+YGKCG  + +++VFDE+  R+++ WN +++ ++
Sbjct: 259 ARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFS 318

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                  A+ VF LM  EGM+ +  T SS++   G LG  KLG ++HG  +K + + DV 
Sbjct: 319 FRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVF 378

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           ++ SL+DMYAK+G+   A  +F+ M  +N+VSWN M+  F +N    EAV+L+R M    
Sbjct: 379 ISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKG 438

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+ VT  ++L +C  L      +++HA  I+ G    L + NAL + YSKCG +  A 
Sbjct: 439 ETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQ 498

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F ++   D V++  +I  Y+    S ES+ +F +M    +RPD ++F+ V+SAC++  
Sbjct: 499 NVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLA 557

Query: 480 LVSEGLRYFNLMI 492
            + +G     L++
Sbjct: 558 FIRQGKEIHGLLV 570



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 223/448 (49%), Gaps = 25/448 (5%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQ---------QGKQLHSHIMKLG-LCNKLSLQNQVLH 106
           ++TH + SF+S +L+ S     LQ         Q KQ+H++ +  G L   +SL   ++ 
Sbjct: 20  KNTHFS-SFFSTSLQTSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLIL 78

Query: 107 VYVKCKAFDDMEKLFDEMRV--RNIVTWNTLI-----SGIINCGGNVTPYFRRMLLDNVR 159
            Y       +   LF       R+   WNTLI     +G+ +  G     +  M+   V+
Sbjct: 79  QYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVFDGFGT----YNTMVRAGVK 134

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D  T+  +L+ C    ++  GR +H    K+GF  + FV + L+  YG CG   DA +V
Sbjct: 135 PDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKV 194

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM--RLEGMKGDYFTFSSLVNSCGTLG 277
           FDE+  RD V WN ++   +L+   + A+  F +M     G++ D  T  S++  C    
Sbjct: 195 FDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETE 254

Query: 278 SSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
              + R +H   +K       V V  +LVD+Y K G+   + +VFD +  +NV+SWN ++
Sbjct: 255 DKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAII 314

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
             F   G   +A+ + R M+     P+ VT++S+L   G L +     +VH +++K  ++
Sbjct: 315 TSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIE 374

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + + I N+LI+ Y+K GS   A   F  +   ++V+W ++I  +A + L  E++E+  +M
Sbjct: 375 SDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQM 434

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +    P+++ F  VL AC+  G ++ G
Sbjct: 435 QAKGETPNNVTFTNVLPACARLGFLNVG 462



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A   F++QGK++H  +++      L + N +L +Y +C   D   K+F  ++ +++ +WN
Sbjct: 554 ANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWN 613

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           T+I G    G        F  M  D V  D ++F ++L AC     IE GR+    +  +
Sbjct: 614 TMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDL 673

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDA 216
                    + +VDL G+ G +E+A
Sbjct: 674 NIEPTHTHYACMVDLLGRAGLMEEA 698


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 175/468 (37%), Positives = 281/468 (60%), Gaps = 1/468 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +++ + AC Q+ ++E  R++H+ +    F  + F+ ++L+ LY KCG V +AR+VFDE+ 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +D+V W  +++ YA N + + AI +   M     K + FTF+SL+ + G    S +GRQ
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  +  DV V ++L+DMYA+ G +D A  VFD + +KN VSWN ++ GF + GD
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G  A+    +ML+  F     T +S+ SS   L    + + VHA+ IK+  +      N 
Sbjct: 234 GETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNT 293

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+K GS+  A + F  V + DLVTW +++ A+A +GL KE++  FE+M    +  +
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + FL +L+ACSHGGLV EG RYF +M  +Y + P+ +H+  +  LLGR GLL  A   +
Sbjct: 354 QVTFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLNFALVFI 412

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MPIEP +   GA + AC++H +  + ++AA+ + EL+P       L+ N+YAS   W 
Sbjct: 413 FKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
             AR+R++M+     K P CSW+E+   +H FV++D +HP+A  +Y M
Sbjct: 473 AAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKM 520



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 219/425 (51%), Gaps = 16/425 (3%)

Query: 31  TTTITNAQKHDRSVLSS-QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHI 89
           T+T  N      +VL    L ++G +  +    H+F    +   A+   L+  +++H+H+
Sbjct: 22  TSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTF----ITACAQSKNLEDARKVHAHL 77

Query: 90  MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVT 147
                     L N ++H+Y KC +  +  K+FDEMR +++V+W +LI+G    +      
Sbjct: 78  ASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAI 137

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
                ML    + +  TF SLL+A     D  +GR++H+  +K  +  + +V SAL+D+Y
Sbjct: 138 GLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMY 197

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
            +CG ++ A  VFD++  ++ V WN ++S +A    G+ A+  F  M   G +  +FT+S
Sbjct: 198 ARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYS 257

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S+ +S   LG+ + G+ +H  +IK    +      +L+DMYAK+G++ DA +VFD +  K
Sbjct: 258 SVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDK 317

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-- 385
           ++V+WNTM+  F Q G G+EAV    +M +     ++VT   IL++C    +  E ++  
Sbjct: 318 DLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYF 377

Query: 386 --VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ-CFGSVKEPDLVTWTSIIGAYAF 442
             +  Y ++  +  F+++    +    + G +  AL   F    EP    W +++ A   
Sbjct: 378 EMMKEYDLEPEIDHFVTV----VALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRM 433

Query: 443 HGLSK 447
           H  +K
Sbjct: 434 HKNAK 438



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 348 AVKLLRDML---QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           A  +LRD+     G   P      + +++C       + R+VHA+   +       ++N+
Sbjct: 32  ASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNS 91

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y KCGS+  A + F  ++  D+V+WTS+I  YA + + +E+I +   ML    +P+
Sbjct: 92  LIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPN 151

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMIS-DYHILPDSEHYTCLTDLLGRVGLL 517
              F  +L A         G +   L +  D+H   D    + L D+  R G++
Sbjct: 152 GFTFASLLKAAGAHADSGIGRQIHALAVKCDWH--EDVYVGSALLDMYARCGMM 203


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 185/523 (35%), Positives = 295/523 (56%), Gaps = 9/523 (1%)

Query: 110 KCKA---FDDMEKLFDEMRVRNIVTWNTLI---SGIINCGGNVTPY-FRRMLLDNVRLDH 162
           +C A   F    +L  +++  +I  W++L+   SG +     ++   +R+M  + V    
Sbjct: 45  RCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSR 104

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
            TF  LL+A  +  D     + H+ ILK GF  + FV ++L+  Y  CG  E   RVFD 
Sbjct: 105 HTFPPLLKAVFKLRDAN-PFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDG 163

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
              +D+V W  M+  +  N     A+  F  M+  G+  +  T  S++ +       + G
Sbjct: 164 TEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFG 223

Query: 283 RQIHGLVIKQS-FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           R IHG  ++      DV + +SLVDMY K G  DDA +VFD M ++NVV+W  ++ G+ Q
Sbjct: 224 RSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQ 283

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
                + + +  +ML+    P+E TL+S+LS+C  +      R+VH Y IKN ++   ++
Sbjct: 284 GRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTV 343

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
              LI+ Y+KCG +  A+  F  ++E ++ TWT++I  +A HG +  ++++F  MLS  V
Sbjct: 344 GTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHV 403

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            P+ + F+ VLSAC+HGGLV EG R F  M   +++ P ++HY C+ DL GR GLL EA 
Sbjct: 404 SPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAK 463

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
            L+  MP+EP +   GA  G+C +H    L K+AA ++++L+PS    Y L++N+Y+  +
Sbjct: 464 ALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQ 523

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
            W DVAR+RK M+D    K PGCSWIE+ G++H F++ D   P
Sbjct: 524 NWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKP 566



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 203/413 (49%), Gaps = 35/413 (8%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           Q+R +G +  S H+         K+     F     Q H+HI+K G  + L ++N ++  
Sbjct: 94  QMRRNGVV-PSRHTFPPLLKAVFKLRDANPF-----QFHAHILKFGFDSDLFVRNSLISG 147

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITF 165
           Y  C  F+   ++FD    +++V+W  +I G +    ++    YF  M    V  + +T 
Sbjct: 148 YSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTV 207

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            S+L+A  +A+D+  GR +H F L+ G    + F+ S+LVD+YGKCG  +DA++VFDE+ 
Sbjct: 208 VSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMP 267

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R++V W  +++ Y      +  + VF  M    +  +  T SS++++C  +G+   GR+
Sbjct: 268 SRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRR 327

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H  VIK S +++  V T+L+D YAK G +++A  VF+ +  KNV +W  M+ GF  +G 
Sbjct: 328 VHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGY 387

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
              AV L   ML     P+EVT   +LS+C            H   ++ G + FLS++  
Sbjct: 388 AIGAVDLFHTMLSSHVSPNEVTFIVVLSACA-----------HGGLVEEGRRLFLSMKER 436

Query: 405 LINAYSKCGSIAGALQCFGS--------------VKEPDLVTWTSIIGAYAFH 443
             N   K    A  +  FG                 EP    W ++ G+   H
Sbjct: 437 F-NLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIH 488


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 326/585 (55%), Gaps = 20/585 (3%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           GFL  G QL S ++K GL + L + N  + +Y +  +F    ++FDEM  +++++WN+L+
Sbjct: 114 GFLL-GLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLL 172

Query: 137 SGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           SG+   G         FR M+ + V LDH++F S++  C    D+++ R++H   +K G+
Sbjct: 173 SGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGY 232

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                V + L+  Y KCG +E  + VF ++  R++V W  M+S        D A+++F  
Sbjct: 233 ESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLN 287

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR +G+  +  TF  L+N+       K G +IHGL IK  F  +  V  S + +YAK   
Sbjct: 288 MRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEA 347

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA + F+ +T + ++SWN M+ GF QNG   EA+K+       +  P+E T  S+L++
Sbjct: 348 LEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNA 406

Query: 374 CG-SLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
              +  IS +  Q  HA+ +K G+ +   + +AL++ Y+K G+I  + + F  + + +  
Sbjct: 407 IAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQF 466

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            WTSII AY+ HG  +  + +F KM+   V PD + FL VL+AC+  G+V +G   FN+M
Sbjct: 467 VWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMM 526

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           I  Y++ P  EHY+C+ D+LGR G L EA +L++ +P  P    L + +G+C++HG++ +
Sbjct: 527 IEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKM 586

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
               AE  +E++P    +Y  + N+YA +  W   A +RK MR     K  G SWI++  
Sbjct: 587 GAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGD 646

Query: 612 -----EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV 651
                 +  F S D+SHP++  +Y M+  + GL  E N+ G   V
Sbjct: 647 TEGSLTMQGFSSGDKSHPKSDEIYRMV-EIIGL--EMNLEGKVAV 688



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 215/410 (52%), Gaps = 12/410 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + A  G L++G Q+H      G  + + + N V+ +Y K   FD+   +F+ +   ++
Sbjct: 8   LALKACRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDV 67

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           V+WNT++SG  +       +  RM    V  D  T+++ L  CV ++   +G +L S ++
Sbjct: 68  VSWNTILSGFDD-NQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVV 126

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-CLGDGAI 248
           K G   +  V ++ + +Y + G    ARRVFDE+  +D++ WN ++S  +     G  A+
Sbjct: 127 KTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAV 186

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M  EG++ D+ +F+S++ +C      KL RQIHGL IK+ ++  + V   L+  Y
Sbjct: 187 VIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRY 246

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           +K G ++    VF  M+ +NVVSW TM+     N D  +AV +  +M      P+EVT  
Sbjct: 247 SKCGVLEAVKSVFHQMSERNVVSWTTMI---SSNKD--DAVSIFLNMRFDGVYPNEVTFV 301

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
            ++++        E  ++H   IK G  +  S+ N+ I  Y+K  ++  A + F  +   
Sbjct: 302 GLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFR 361

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR--PDSIAFLEVLSACS 476
           ++++W ++I  +A +G S E++++F   LS A    P+   F  VL+A +
Sbjct: 362 EIISWNAMISGFAQNGFSHEALKMF---LSAAAETMPNEYTFGSVLNAIA 408



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 183/336 (54%), Gaps = 15/336 (4%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D +T    L+AC    D++ G ++H F    GF     VS+A++ +Y K G  ++A  +
Sbjct: 1   MDEVTLCLALKAC--RGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 58

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE--GMKGDYFTFSSLVNSCGTLG 277
           F+ ++  D+V WN ++S +      D  IA+  ++R++  G+  D FT+S+ ++ C    
Sbjct: 59  FENLVDPDVVSWNTILSGF-----DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSE 113

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
              LG Q+   V+K   + D++V  S + MY+++G+   A RVFD M+ K+++SWN+++ 
Sbjct: 114 GFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLS 173

Query: 338 GFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
           G  Q G  G EAV + RDM++     D V+  S++++C   +     RQ+H   IK G +
Sbjct: 174 GLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYE 233

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + L + N L++ YSKCG +      F  + E ++V+WT++I +        +++ +F  M
Sbjct: 234 SLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSN-----KDDAVSIFLNM 288

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
               V P+ + F+ +++A      + EGL+   L I
Sbjct: 289 RFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCI 324


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/576 (33%), Positives = 322/576 (55%), Gaps = 16/576 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L V A  G +  G+++H+  +K G C+ + + N ++++Y KC   ++   +F  M 
Sbjct: 208 FASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGME 267

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNTL++G++  G ++     F         L   T+ ++++ C     + + R+
Sbjct: 268 TRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQ 327

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LHS +LK GF     V +AL+D Y K G + +A  +F  +   +++V W  M++     C
Sbjct: 328 LHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMIN----GC 383

Query: 243 LGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           + +G    A A+F+ MR +G+  + FT+S+++    T   + L  QIH  VIK +++   
Sbjct: 384 IQNGDVPLAAALFSRMREDGVAPNDFTYSTIL----TASVASLPPQIHAQVIKTNYECTS 439

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           +V T+L+  Y+K  N ++A  +F  +  K+VVSW+ M+  + Q GD   A  +   M   
Sbjct: 440 IVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMH 499

Query: 359 SFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P+E T++S++ +C S +   +  RQ HA +IK+     L + +AL++ Y++ GSI  
Sbjct: 500 GLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIES 559

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F    + DLV+W S++  YA HG S+++++VF +M +  +  D + FL V+  C+H
Sbjct: 560 AQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAH 619

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV EG RYF+ M  DY I P  EHY C+ DL  R G L EA  L+  M          
Sbjct: 620 AGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWR 679

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             +GACKVH ++ L K AAEKLL LEP     Y L+SN+Y++   W +   +RK+M    
Sbjct: 680 TLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKK 739

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             K  GCSWI+I  ++H+F++SD+SHP +  +YA L
Sbjct: 740 VKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKL 775



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 214/399 (53%), Gaps = 8/399 (2%)

Query: 82  GKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           GKQLH   ++ G     + +   ++ +Y+K  +  D  K+F+ M  RN+VTW +L++G I
Sbjct: 122 GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYI 181

Query: 141 NCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G   +V   F RM  + V  + +TF S+L        +++GRR+H+  +K G     F
Sbjct: 182 QDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVF 241

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+++Y KCG VE+AR VF  +  RD+V WN +++   LN     A+ +F+  R   
Sbjct: 242 VCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSI 301

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
                 T+++++  C  +    L RQ+H  V+K+ F     V T+L+D Y+K G + +A 
Sbjct: 302 TMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNAL 361

Query: 319 RVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +F  M+ ++NVVSW  M+ G  QNGD   A  L   M +    P++ T ++IL++    
Sbjct: 362 DIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA---- 417

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S++    Q+HA  IK   +    +  AL+ +YSK  +   AL  F  + + D+V+W++++
Sbjct: 418 SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAML 477

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             YA  G S  +  +F KM  H ++P+      V+ AC+
Sbjct: 478 TCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACA 516



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 201/402 (50%), Gaps = 10/402 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
            S Y+  +K+ A    L   +QLHS ++K G  +  ++   ++  Y K     +   +F 
Sbjct: 306 QSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFL 365

Query: 123 EMR-VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
            M   +N+V+W  +I+G I  G        F RM  D V  +  T++++L A V +    
Sbjct: 366 LMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS---- 421

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +  ++H+ ++K  +     V +AL+  Y K    E+A  +F  +  +D+V W+ M++CYA
Sbjct: 422 LPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYA 481

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT-LGSSKLGRQIHGLVIKQSFDLDV 298
                DGA  +F  M + G+K + FT SS++++C +      LGRQ H + IK      +
Sbjct: 482 QAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDAL 541

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V+++LV MYA+ G+I+ A  +F+  T +++VSWN+M+ G+ Q+G  ++A+ + R M   
Sbjct: 542 CVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAE 601

Query: 359 SFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               D VT  S++  C    +  E  R   + A   G+   +     +++ YS+ G +  
Sbjct: 602 GIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDE 661

Query: 418 ALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           A+     +  P   + W +++GA   H   +      EK+LS
Sbjct: 662 AMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLS 703



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 169/313 (53%), Gaps = 10/313 (3%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           +L+ C    D  +G++LH   ++ G    +  V ++LVD+Y K   V D R+VF+ +  R
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 227 DLVLWNVMVSCYALNCLGDGAIA----VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           ++V W  +++ Y    + DGA++    +F  MR EG+  +  TF+S+++   + G   LG
Sbjct: 169 NVVTWTSLLTGY----IQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG 224

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           R++H   +K      V V  SL++MYAK G +++A  VF GM  +++VSWNT++ G   N
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLN 284

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   EA++L  D         + T A+++  C ++      RQ+H+  +K G  ++ ++ 
Sbjct: 285 GHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM 344

Query: 403 NALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            AL++AYSK G +  AL  F  +    ++V+WT++I     +G    +  +F +M    V
Sbjct: 345 TALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGV 404

Query: 462 RPDSIAFLEVLSA 474
            P+   +  +L+A
Sbjct: 405 APNDFTYSTILTA 417



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 27/350 (7%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+ FDE+  R+  L + +        +        ++ R  G +        ++  CG+
Sbjct: 57  ARQAFDEIPHRN-TLDHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGS 115

Query: 276 LGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           +    LG+Q+HGL I+   D  DV V TSLVDMY K  ++ D  +VF+ M  +NVV+W +
Sbjct: 116 VPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTS 175

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           ++ G+ Q+G   + ++L   M      P+ VT AS+LS   S  +    R+VHA ++K G
Sbjct: 176 LLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFG 235

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
             + + + N+L+N Y+KCG +  A   F  ++  D+V+W +++     +G   E++++F 
Sbjct: 236 CCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFH 295

Query: 455 KMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLR-YFNLMISDYHILPDSE 502
              S         +  V+  C+           H  ++  G   Y N+M           
Sbjct: 296 DSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM----------- 344

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             T L D   + G L  A D+   M       +  A I  C  +G + LA
Sbjct: 345 --TALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLA 392


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/583 (32%), Positives = 323/583 (55%), Gaps = 4/583 (0%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           + +S H     Y   L+  + F  +  G+ +H +++KLG      +   +  +Y +C  F
Sbjct: 2   VAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEF 61

Query: 115 DDMEKLFDEMRVRNIVTWNTLIS-GIINCGGN-VTPYFRRMLLDNVRLDHITFNSLLRAC 172
           ++  +LFD+  V+++   ++L + G  N  G  +   F RM+ + +  D  TF +LLR  
Sbjct: 62  ENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFI 121

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
              + I++ + +H   +      +  V++A++ LY K   + DAR++FD++  +D V+WN
Sbjct: 122 AGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWN 181

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +M++ YA        + +F  M   G++ D FT   +++S   L     G+Q H  +++ 
Sbjct: 182 IMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRN 241

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             D  V V  SL+DMY +   +D AC++F+ MT K+V+SW+ M+ G+ +NG    A+ L 
Sbjct: 242 GSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLF 301

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M       D V + +IL +   +      + +H Y++K G+ +  S+  AL+  Y+KC
Sbjct: 302 SKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKC 361

Query: 413 GSIAGALQCFGSVK--EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           GSI  A + F   K  + DL+ W S+I A+A HG   +  +++ +M     +PD + FL 
Sbjct: 362 GSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLG 421

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +L+AC + GLV +G  +F  M   Y   P  EHY C+ +LLGR GL+ EA +L+ +MPI+
Sbjct: 422 LLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIK 481

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P +   G  + ACK+H    LA++AAEKL+ +EP    NY L+SN+YA+   W  VA++R
Sbjct: 482 PDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMR 541

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             +R+    K+PGCSW+EI G +  F  +D++HP+A  +Y +L
Sbjct: 542 SFLRNKGLKKIPGCSWLEINGHVTEFRVADQTHPRAGDIYTIL 584



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 182/337 (54%), Gaps = 1/337 (0%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M+  ++  D  T+  +LR+C    ++  GR +H +++K+GF L   V++AL ++Y +C  
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
            E+A ++FD+   +DL   + + +    N  G+G   VF  M  E +  D FTF +L+  
Sbjct: 61  FENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRF 120

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
              L S +L + +H + I      D+LV T+++ +Y+K  ++ DA ++FD M  K+ V W
Sbjct: 121 IAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVW 180

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N M+  + + G   E ++L + M +     D  T   ++SS   L      +Q HA+ ++
Sbjct: 181 NIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILR 240

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           NG  + +S+ N+LI+ Y +C  +  A + F  + +  +++W+++I  Y  +G S  ++ +
Sbjct: 241 NGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSL 300

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           F KM S  ++ D +  + +L A  H G + E ++Y +
Sbjct: 301 FSKMKSDGIQADFVIMINILPAFVHIGAL-ENVKYLH 336


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 311/555 (56%), Gaps = 4/555 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ GK +   I +      L +   ++ +Y +C++ +D  ++F  M+  N++TW+ +I+ 
Sbjct: 277 LQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITA 336

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G  G    YFR M  + +  + +TF SLL        +E   R+H  I + G    
Sbjct: 337 FADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDT 396

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + +ALV++YG+C   +DAR VFD++   +L+ WN M+  Y      D A+ +F  M+ 
Sbjct: 397 TTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQ 456

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           +G++ D   F +++ +C T+GS    R+ +H  V +       LV TSLV+MYAK G +D
Sbjct: 457 QGIQPDRVNFMTILGAC-TIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELD 515

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  +   M  + + +WN ++ G+  +G  REA++  + +   +   D+VT  S+L++C 
Sbjct: 516 VAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACT 575

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           S +   E + +H+ A++ G+ + + ++NAL N YSKCGS+  A + F S+     V+W  
Sbjct: 576 SSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNG 635

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++ AYA HG S+E +++  KM    V+ + I F+ VLS+CSH GL++EG +YF+ +  D 
Sbjct: 636 MLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDR 695

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I   +EHY CL DLLGR G L EA   ++ MP+EP   T  + +GAC+V   +   K A
Sbjct: 696 GIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLA 755

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A KLLEL+P       ++SN+Y+    W + A+LR+ M      KVPG S I++  ++H 
Sbjct: 756 AGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHE 815

Query: 616 FVSSDRSHPQAVHMY 630
           F   D SHP+A  +Y
Sbjct: 816 FRVRDTSHPRAAEIY 830



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 151/512 (29%), Positives = 264/512 (51%), Gaps = 14/512 (2%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           F  L+ G  +H+  ++ G      +   +L++Y KC    D + +F+EM  +N+VTWN +
Sbjct: 71  FRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAM 130

Query: 136 ISGIIN----CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           + G+ +    C       F RMLL+ V+ + ITF ++L + V  D +  G+ +HS + + 
Sbjct: 131 L-GVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRES 189

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
              L+ FV++ALV+ Y KCG + DAR+VFD + CR +  WN M+S Y+++     A  +F
Sbjct: 190 EHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIF 249

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M+ EG + D  TF S++++C    + + G+ +   + + SF+LD+ V T+L+ MYA+ 
Sbjct: 250 QRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARC 309

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            + +DA +VF  M   N+++W+ ++  F  +G   EA++  R M Q    P+ VT  S+L
Sbjct: 310 RSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLL 369

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           +   + S   E  ++H    ++G+    ++ NAL+N Y +C S   A   F  ++ P+L+
Sbjct: 370 NGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLI 429

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC---SHGGLVSEGLRYF 488
           +W S+IG Y       +++++F  M    ++PD + F+ +L AC   SHG       +  
Sbjct: 430 SWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHG----RTRKLV 485

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
           +  + +  +       T L ++  + G L  A  +L  M  E +       I    +HG 
Sbjct: 486 HQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGR 544

Query: 549 IGLAKWAAEKL-LELEPSKPVNYALVSNVYAS 579
              A  A +KL LE  P   V +  V N   S
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTS 576



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 222/411 (54%), Gaps = 6/411 (1%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHIT 164
           +Y +C +  D    F ++R RN+V+WN +IS   +          F  MLL+ V  + IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
             ++L +C    ++  G  +H+  L+ GF  N  V++AL+++YGKCG + DA+ VF+E+ 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 225 CRDLVLWNVMVSCYALN-CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            +++V WN M+  Y+L  C    A+ +F  M LEG+K +  TF +++NS     + + G+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            IH  V +    LDV V T+LV+ Y K G++ DA +VFDGM  ++V +WN+M+  +  + 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA  + + M Q     D VT  SIL +C +       + V     +   +  L +  
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGT 300

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALI  Y++C S   A Q FG +K+ +L+TW++II A+A HG   E++  F  M    + P
Sbjct: 301 ALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILP 360

Query: 464 DSIAFLEVLSA-CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           + + F+ +L+   +  GL  E L   +L+I+++ +   +     L ++ GR
Sbjct: 361 NRVTFISLLNGFTTPSGL--EELSRIHLLITEHGLDDTTTMRNALVNVYGR 409



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 175/348 (50%), Gaps = 3/348 (0%)

Query: 206 LYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265
           +Y +CG + DA   F ++  R++V WNVM+S Y+       A+A+F+ M LEG+  +  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
             +++NSCG+    + G  +H L +++ F  + LVAT+L++MY K G + DA  VF+ M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 326 AKNVVSWNTMVVGFGQNG-DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
            KNVV+WN M+  +   G   + AV+L   ML      + +T  ++L+S        + +
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            +H+   ++     + +  AL+N Y+KCGS+  A + F  +    + TW S+I AY+   
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            S E+  +F++M     R D + FL +L AC +   +  G ++    IS+     D    
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHG-KHVRESISETSFELDLFVG 299

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           T L  +  R     +A  +   M  +    T  A I A   HG  G A
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEA 346


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 197/592 (33%), Positives = 327/592 (55%), Gaps = 19/592 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS AL         + G QL S ++K GL + L + N  + +Y +  +F    ++FDEM 
Sbjct: 102 YSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMP 161

Query: 126 VRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            +++++WN+L+SG+   G         FR M+ + V LDH++F S++  C    D+++ R
Sbjct: 162 FKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLAR 221

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H   +K G+     V + L+  Y KCG +E  + VF ++  R++V W  M+S      
Sbjct: 222 QIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMISSNR--- 278

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             D A+++F  MRL+G+  +  TF  L+N+       K G +IHGL IK  F  +  V  
Sbjct: 279 --DDAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGN 336

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           S + MYAK   ++DA + FD +T + ++SWN M+ GF QNG   EA+K+       +  P
Sbjct: 337 SFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSATAETM-P 395

Query: 363 DEVTLASILSSCG-SLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           +E T  S+L++   +  IS +  Q  HA+ +K G+ +   + +AL++ Y+K G+I  + +
Sbjct: 396 NEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEK 455

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  + + +   WTSII AY+ HG     + +F +M+   V PD + FL VL+AC+  G+
Sbjct: 456 VFNEMSQRNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGM 515

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V +G    N+MI DY++ P  EHY+C+ D+LGR G L EA +L++ +P  P    L + +
Sbjct: 516 VDKGHEILNMMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSML 575

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           G+C++HG++ +    AE  +E++P    +Y  + N+YA +  W   A +RK MR     K
Sbjct: 576 GSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSK 635

Query: 601 VPGCSWIEIAG-----EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSG 647
             G SWI++        +  F S D+SHP++  +Y M+  + GL  E N+ G
Sbjct: 636 EAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMV-EIVGL--EMNLEG 684



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 214/408 (52%), Gaps = 8/408 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L + A  G L++G Q+H      G  + + + N V+ +Y K   FD+   +F+ +   ++
Sbjct: 8   LALKACRGDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIFENLVDPDV 67

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           V+WNT++SG  +       +  RM    V  D  T+++ L  CV ++   +G +L S ++
Sbjct: 68  VSWNTILSGFDD-NQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVV 126

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-CLGDGAI 248
           K G   +  V ++ + +Y + G    ARRVFDE+  +D++ WN ++S  +     G  A+
Sbjct: 127 KSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAV 186

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M  EG++ D+ +F+S++ +C      KL RQIHGL IK+ ++  + V   L+  Y
Sbjct: 187 LIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRY 246

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           +K G ++    VF  M+ +NVVSW TM+     N D  +AV +  +M      P+EVT  
Sbjct: 247 SKCGVLEAVKSVFYQMSERNVVSWTTMI---SSNRD--DAVSIFLNMRLDGVYPNEVTFV 301

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
            +L++        E  ++H   IK G  +  S+ N+ I  Y+K  ++  A + F  +   
Sbjct: 302 GLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFR 361

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           ++++W ++I  +A +G S E++++F    +  + P+   F  VL+A +
Sbjct: 362 EIISWNAMISGFAQNGFSHEALKMFLSATAETM-PNEYTFGSVLNAIA 408



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 183/336 (54%), Gaps = 15/336 (4%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D +T    L+AC    D++ G ++H F    GF     VS+A++ +Y K G  ++A  +
Sbjct: 1   MDEVTLCLALKAC--RGDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYI 58

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE--GMKGDYFTFSSLVNSCGTLG 277
           F+ ++  D+V WN ++S +      D  IA+  ++R++  G+  D FT+S+ ++ C    
Sbjct: 59  FENLVDPDVVSWNTILSGF-----DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSE 113

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             +LG Q+   V+K   + D++V  S + MY+++G+   A RVFD M  K+++SWN+++ 
Sbjct: 114 GFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLS 173

Query: 338 GFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
           G  Q G  G EAV + RDM++     D V+  S++++C   +     RQ+H   IK G +
Sbjct: 174 GLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYE 233

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + L + N L++ YSKCG +      F  + E ++V+WT++I +        +++ +F  M
Sbjct: 234 SLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMISSN-----RDDAVSIFLNM 288

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
               V P+ + F+ +L+A      + EGL+   L I
Sbjct: 289 RLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCI 324


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/583 (33%), Positives = 318/583 (54%), Gaps = 7/583 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L V A    L+ GKQ+H  +++ G    +S+ N  +++YVK  + +   ++F +M+
Sbjct: 300 YIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK 359

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR----LDHITFNSLLRACVQADDIE-V 180
             ++++WNT+ISG    G  +     R+ +D +R     D  T  S+LRAC   ++   V
Sbjct: 360 EVDLISWNTVISGCARSG--LEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCV 417

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           GR++H+  LK G  L+ FVS+AL+D+Y K G +E+A  +F      DL  WN M+  + +
Sbjct: 418 GRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTV 477

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +     A+ +F+LM   G K D  TF++   + G L   + G+QIH +VIK  F  D+ V
Sbjct: 478 SDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFV 537

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            + ++DMY K G +  A +VF+ + + + V+W T++ G  +NG+  +A+     M     
Sbjct: 538 ISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGV 597

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PDE T A+++ +C  L+   + +Q+HA  +K        +  +L++ Y+KCG+I  A  
Sbjct: 598 QPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYG 657

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +    +  W ++I   A HG ++E++  F +M S  V PD + F+ VLSACSH GL
Sbjct: 658 LFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGL 717

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
            S+  + F+ M   Y + P+ EHY+CL D L R G + EA  +++SMP E  +      +
Sbjct: 718 TSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLL 777

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            AC+V G     +  AEKL  ++PS    Y L+SN+YA+   W +    R MM+     K
Sbjct: 778 NACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKK 837

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            PG SWI++  ++H FV+ DRSH +   +Y  +  V   ++E 
Sbjct: 838 EPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEE 880



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 190/405 (46%), Gaps = 37/405 (9%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD--EMRVRNIVTWNTLISGI 139
           GK+ H+ I+  GL     + N ++ +Y KC +     KLFD      R++VT+N +++  
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 140 INCG-------GNVTPYFRRMLLDNVRLD-HITFNSLLRACVQADDIEVGRRLHSFILKV 191
            + G        +   +  R+L  +V L    T + L + C+          L  + +K+
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G   + FV+ ALV++Y K   + +AR +FD +  RD+VLWNVM+  Y     GD  + +F
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           +     G++ D  +  +++   G                K  F+ ++      V  YA  
Sbjct: 212 SAFHRSGLRPDCVSVRTILMGVGK---------------KTVFEREL----EQVRAYA-- 250

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
                  ++F      +V  WN  +  + Q G+G EAV   RDM++     D +T   IL
Sbjct: 251 ------TKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVIL 304

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           S   SL+     +Q+H   ++ G   F+S+ N+ IN Y K GS+  A + FG +KE DL+
Sbjct: 305 SVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLI 364

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +W ++I   A  GL + S+ +F  +L   + PD      VL ACS
Sbjct: 365 SWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 189/413 (45%), Gaps = 34/413 (8%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S   K+   +G     + L  + +K+GL   + +   ++++Y K +   +   LFD M V
Sbjct: 126 SPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPV 185

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R++V WN ++   +  G    V   F       +R D ++  ++L               
Sbjct: 186 RDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL--------------- 230

Query: 185 HSFILKVGFGLNCFVSSAL--VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
                 +G G        L  V  Y    FV D     D+    D+ +WN  +S Y    
Sbjct: 231 ------MGVGKKTVFERELEQVRAYATKLFVCD-----DD---SDVTVWNKTLSSYLQAG 276

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G  A+  F  M    +  D  T+  +++   +L   +LG+QIHG V++  +D  V VA 
Sbjct: 277 EGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVAN 336

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           S ++MY K G+++ A R+F  M   +++SWNT++ G  ++G    +++L  D+L+    P
Sbjct: 337 SAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLP 396

Query: 363 DEVTLASILSSCGSLSIS-CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           D+ T+ S+L +C SL  S C  RQVH  A+K G+     +  ALI+ YSK G +  A   
Sbjct: 397 DQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELL 456

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           F +    DL +W +++  +      +E++ +F  M     + D I F     A
Sbjct: 457 FHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKA 509



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 150/342 (43%), Gaps = 48/342 (14%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC- 225
           S+LR  +   D+ +G+R H+ I+  G   + +V++ L+ +Y KCG +  AR++FD     
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 226 -RDLVLWNVMVSCYA-LNCLGD-----GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
            RDLV +N +++ YA    L D      A  +F L+R   M     T S L   C   GS
Sbjct: 78  DRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGS 137

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
                 + G  +K     DV VA +LV++YAK   I +A  +FD M  ++VV WN M+  
Sbjct: 138 PSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKA 197

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI-SCETRQVHAYAIKNGVQA 397
           + + G G E + L     +    PD V++ +IL   G  ++   E  QV AYA K     
Sbjct: 198 YVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATK----- 252

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
                                   F    + D+  W   + +Y   G   E+++ F  M+
Sbjct: 253 -----------------------LFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMI 289

Query: 458 SHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYF 488
              V  DS+ ++ +LS  +           HG +V  G   F
Sbjct: 290 KSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQF 331


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 313/580 (53%), Gaps = 7/580 (1%)

Query: 79  LQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L  G+ LH   M++G+ N  + LQN VL +Y +C++ +D +KLFDEM   N V+  T+IS
Sbjct: 99  LSHGRLLHDR-MRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMIS 157

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                G        F  ML    +     + +LL++ V    ++ GR++H+ +++ G   
Sbjct: 158 AYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCS 217

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N  + + +V++Y KCG++  A+RVFD++  +  V    ++  Y        A+ +F  + 
Sbjct: 218 NTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLV 277

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG++ D F FS ++ +C +L    LG+QIH  V K   + +V V T LVD Y K  + +
Sbjct: 278 TEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFE 337

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSC 374
            ACR F  +   N VSW+ ++ G+ Q     EAVK  + +  + +   +  T  SI  +C
Sbjct: 338 SACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQAC 397

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L+      QVHA AIK  +      E+ALI  YSKCG +  A + F S+  PD+V WT
Sbjct: 398 SVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWT 457

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           + I  +A++G + E++ +FEKM+S  ++P+S+ F+ VL+ACSH GLV +G    + M+  
Sbjct: 458 AFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRK 517

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y++ P  +HY C+ D+  R GLL EA   + +MP EP + +   F+  C  H ++ L + 
Sbjct: 518 YNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEI 577

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           A E+L +L+P     Y L  N+Y     W + A + K+M +    K   CSWI+  G+IH
Sbjct: 578 AGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIH 637

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDK 654
            F+  D+ HPQ   +Y  L    G ME +     CN+ ++
Sbjct: 638 RFIVGDKHHPQTQEIYEKLKEFDGFMEGDMF--QCNMTER 675



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 194/391 (49%), Gaps = 13/391 (3%)

Query: 52  SGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
           SG +        S Y+  LK       L  G+Q+H+H+++ GLC+  S++  ++++YVKC
Sbjct: 173 SGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKC 232

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLL 169
                 +++FD+M V+  V    L+ G    G   +    F  ++ + V  D   F+ +L
Sbjct: 233 GWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVL 292

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
           +AC   +++ +G+++H+ + K+G      V + LVD Y KC   E A R F E+   + V
Sbjct: 293 KACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDV 352

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGL 288
            W+ ++S Y      + A+  F  +R +     + FT++S+  +C  L    +G Q+H  
Sbjct: 353 SWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHAD 412

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
            IK+S        ++L+ MY+K G +DDA  VF+ M   ++V+W   + G    G+  EA
Sbjct: 413 AIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEA 472

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSI-----SCETRQVHAYAIKNGVQAFLSIEN 403
           ++L   M+     P+ VT  ++L++C    +      C    +  Y +   +  +    +
Sbjct: 473 LRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHY----D 528

Query: 404 ALINAYSKCGSIAGALQCFGSVK-EPDLVTW 433
            +I+ Y++ G +  AL+   ++  EPD ++W
Sbjct: 529 CMIDIYARSGLLDEALKFMKNMPFEPDAMSW 559



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 141/278 (50%), Gaps = 5/278 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  A    L  GKQ+H+ + KLGL +++S+   ++  Y+KC +F+   + F E+R
Sbjct: 288 FSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIR 347

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVR-LDHITFNSLLRACVQADDIEVGR 182
             N V+W+ +ISG             F+ +   N   L+  T+ S+ +AC    D  +G 
Sbjct: 348 EPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGG 407

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H+  +K     + +  SAL+ +Y KCG ++DA  VF+ +   D+V W   +S +A   
Sbjct: 408 QVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYG 467

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVA 301
               A+ +F  M   GMK +  TF +++ +C   G  + G+  +  ++ K +    +   
Sbjct: 468 NASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHY 527

Query: 302 TSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
             ++D+YA++G +D+A +    M    + +SW   + G
Sbjct: 528 DCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSG 565


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 312/563 (55%), Gaps = 34/563 (6%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q  Q+ + I+KLG  ++L + N ++  Y K    D   +LF EM                
Sbjct: 162 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM---------------- 205

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                              +D  TF ++L A +  DDI +G+++HSF++K  F  N FVS
Sbjct: 206 -----------------PEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVS 248

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+D Y K   V DAR++FDE+  +D V +NV++S YA +     A  +F  ++     
Sbjct: 249 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 308

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
              F F+++++        ++GRQIH   I  + D ++LV  SLVDMYAK G  ++A  +
Sbjct: 309 RKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMI 368

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F  +T ++ V W  M+  + Q G   E ++L   M Q S   D+ T AS+L +  S++  
Sbjct: 369 FTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASL 428

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              +Q+H++ IK+G  + +   +AL++ Y+KCGSI  A+Q F  + + ++V+W ++I AY
Sbjct: 429 SLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAY 488

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A +G ++ +++ F++M+   ++PDS++FL VLSACSH GLV EGL +FN M   Y + P 
Sbjct: 489 AQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPR 548

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHY  + D+L R G   EA  L+A MPI+P      + + AC++H +  LA+ AA++L 
Sbjct: 549 REHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLF 608

Query: 561 ELEPSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
            +E  +    Y  +SN+YA+   W +V+++ K MRD    K+P  SW+EI  E H F ++
Sbjct: 609 NMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSAN 668

Query: 620 DRSHPQAVHMYAMLCTVFGLMEE 642
           DR HPQ   +   +  +   MEE
Sbjct: 669 DRCHPQIEEIRKKIDMLTKTMEE 691



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 163/325 (50%), Gaps = 12/325 (3%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+Q+H+  +     +++ + N ++ +Y KC  F++ E +F  +  R+ V W  +IS  
Sbjct: 328 EMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAY 387

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
           +  G        F +M   +V  D  TF SLLRA      + +G++LHSFI+K GF  N 
Sbjct: 388 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV 447

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F  SAL+D+Y KCG ++DA + F E+  R++V WN M+S YA N   +  +  F  M L 
Sbjct: 448 FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 507

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNID 315
           G++ D  +F  ++++C   G  + G   H   + Q + LD       S+VDM  ++G  +
Sbjct: 508 GLQPDSVSFLGVLSACSHSGLVEEGLW-HFNSMTQIYKLDPRREHYASVVDMLCRSGRFN 566

Query: 316 DACRVFDGMTA-KNVVSWNTMVVG--FGQNGD-GREAVKLLRDMLQGSFCPDEVTLASIL 371
           +A ++   M    + + W++++      +N +  R A   L +M +       V +++I 
Sbjct: 567 EAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIY 626

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQ 396
           ++ G         +VH      GV+
Sbjct: 627 AAAGQWE---NVSKVHKAMRDRGVK 648



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 127/283 (44%), Gaps = 37/283 (13%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCLGDGAIAVFNLM 254
           N   ++ ++  Y K G + +AR++FD ++ R  V W +++  Y+ LN   + A  +F  M
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE-AFELFVQM 135

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           +  G + DY TF +L++ C          Q+   +IK  +D  ++V  +LVD Y K+  +
Sbjct: 136 QRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 195

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D AC++F  M                                      D  T A++L + 
Sbjct: 196 DLACQLFKEMPE-----------------------------------IDSFTFAAVLCAN 220

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L      +Q+H++ IK      + + NAL++ YSK  S+  A + F  + E D V++ 
Sbjct: 221 IGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYN 280

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            II  YA+ G  K + ++F ++   A       F  +LS  S+
Sbjct: 281 VIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 323



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 47/272 (17%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L+ SA    L  GKQLHS I+K G  + +   + +L VY KC +  D  + F EM 
Sbjct: 415 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RNIV+WN +IS     G        F+ M+L  ++ D ++F  +L AC  +  +E G  
Sbjct: 475 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEG-- 532

Query: 184 LHSF-----ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSC 237
           L  F     I K+      + S  +VD+  + G   +A ++  E+ +  D ++W      
Sbjct: 533 LWHFNSMTQIYKLDPRREHYAS--VVDMLCRSGRFNEAEKLMAEMPIDPDEIMW------ 584

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
                                        SS++N+C    + +L R+    +       D
Sbjct: 585 -----------------------------SSVLNACRIHKNQELARRAADQLFNMEELRD 615

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
                ++ ++YA  G  ++  +V   M  + V
Sbjct: 616 AAPYVNMSNIYAAAGQWENVSKVHKAMRDRGV 647


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 306/583 (52%), Gaps = 26/583 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L  GKQ HS+ +K G+ + + ++  +L +YVKC       + F        
Sbjct: 359 LSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF-------- 410

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
                L  G ++        F +M ++ +  +  T+ S+L+ C      ++G ++H+ +L
Sbjct: 411 -----LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVL 465

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           K GF  N +VSS L+D+Y K G ++ A ++F  +   D+V W  M++ Y  +     A+ 
Sbjct: 466 KTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALN 525

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +F  M+ +G+K D   F+S +++C  + +   GRQIH       +  D+ +  +LV +YA
Sbjct: 526 LFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYA 585

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           + G + +A   FD + AK+ VSWN++V GF Q+G   EA+ +   M +     +  T  S
Sbjct: 586 RCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGS 645

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
            +S+  +++     +Q+H    K G  +   + NALI  Y+KCG+I             D
Sbjct: 646 AVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI-------------D 692

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            ++W S+I  Y+ HG   E++++FE M    V P+ + F+ VLSACSH GLV EG+ YF 
Sbjct: 693 DISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFR 752

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            M   ++++P  EHY C+ DLLGR GLL  A   +  MPI+P +      + AC VH +I
Sbjct: 753 SMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNI 812

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            + ++AA  LLELEP     Y LVSN+YA    W    R R+MM+D    K PG SW+E+
Sbjct: 813 DIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEV 872

Query: 610 AGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL 652
              +H F + D++HP+A  +Y  L  +     EN     CN L
Sbjct: 873 DNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSL 915



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 215/410 (52%), Gaps = 17/410 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    K  F + GKQLH  ++K G  ++  + N ++ +Y +       E++F  M  R+ 
Sbjct: 258 LSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDR 317

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V++N+LISG+   G        F++M LD  + D +T  SLL AC     +  G++ HS+
Sbjct: 318 VSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSY 377

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K G   +  V  +L+DLY KC  ++ A   F                CY      + +
Sbjct: 378 AIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKS 422

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             +F  M++EG+  + FT+ S++ +C TLG++ LG QIH  V+K  F  +V V++ L+DM
Sbjct: 423 FQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDM 482

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK+G +D A ++F  +   +VVSW  M+ G+ Q+    EA+ L ++M       D +  
Sbjct: 483 YAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGF 542

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           AS +S+C  +    + RQ+HA +  +G    LSI NAL++ Y++CG +  A   F  +  
Sbjct: 543 ASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYA 602

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            D V+W S++  +A  G  +E++ +F +M    +  +S  F   +SA ++
Sbjct: 603 KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAAN 652



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 218/440 (49%), Gaps = 30/440 (6%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +Q+H+  +  G  +   + N ++ +Y K       +K+F+ ++ R+ V+W  +ISG+   
Sbjct: 184 EQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQN 243

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           G     Y    +L   ++       +L AC + +  E G++LH  +LK GF    +V +A
Sbjct: 244 G-----YEEEAMLLFCQI-------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNA 291

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           LV LY + G +  A ++F  +  RD V +N ++S  A     + A+A+F  M L+  K D
Sbjct: 292 LVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T +SL+++C ++G+   G+Q H   IK     D++V  SL+D+Y K  +I  A   F 
Sbjct: 352 CVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF- 410

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
                         + +GQ  +  ++ ++   M      P++ T  SIL +C +L  +  
Sbjct: 411 --------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             Q+H   +K G Q  + + + LI+ Y+K G +  AL+ F  +KE D+V+WT++I  Y  
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPDS 501
           H    E++ +F++M    ++ D+I F   +SAC+    + +G + +    +S Y    D 
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYS--DDL 574

Query: 502 EHYTCLTDLLGRVGLLVEAY 521
                L  L  R G + EAY
Sbjct: 575 SIGNALVSLYARCGKVREAY 594



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 190/382 (49%), Gaps = 43/382 (11%)

Query: 113 AFDDME---KLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNS 167
           AF D+     +FDEM +R++  WN + +  I     G V   FRRML  NV  D   F  
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 168 LLRACV-QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           +LR C   A       ++H+  +  GF  + F+ + L+DLY K GF+  A++VF+ +  R
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           D V W  M+S  + N   + A+ +F  + L    K ++F F               G+Q+
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEF---------------GKQL 273

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           HGLV+KQ F  +  V  +LV +Y+++GN+  A ++F  M+ ++ VS+N+++ G  Q G  
Sbjct: 274 HGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYI 333

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             A+ L + M      PD VT+AS+LS+C S+      +Q H+YAIK G+ + + +E +L
Sbjct: 334 NRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSL 393

Query: 406 INAYSKCGSIAGALQ---CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           ++ Y KC  I  A +   C+G +   +                  +S ++F +M    + 
Sbjct: 394 LDLYVKCSDIKTAHEFFLCYGQLDNLN------------------KSFQIFTQMQIEGIV 435

Query: 463 PDSIAFLEVLSACSHGGLVSEG 484
           P+   +  +L  C+  G    G
Sbjct: 436 PNQFTYPSILKTCTTLGATDLG 457



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 184/436 (42%), Gaps = 60/436 (13%)

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           Y   M    VR +  TF  LL  C+ +     G +L  F L  G  LNC V+        
Sbjct: 68  YLHLMEQHGVRANSQTFLWLLEGCLNSRSFYDGLKLIDFYLAFG-DLNCAVN-------- 118

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
                     VFDE+  R L  WN + + +    L      +F  M  + ++ D   F+ 
Sbjct: 119 ----------VFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 269 LVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           ++  C G   S +   QIH   I   F+    +   L+D+Y KNG +  A +VF+ + A+
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           + VSW  M+ G  QNG   EA+ L        FC        +LS+C  +      +Q+H
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLL--------FCQ------IVLSACTKVEFFEFGKQLH 274

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
              +K G  +   + NAL+  YS+ G+++ A Q F  + + D V++ S+I   A  G   
Sbjct: 275 GLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYIN 334

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY-------------------F 488
            ++ +F+KM     +PD +    +LSAC+  G +  G ++                    
Sbjct: 335 RALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLL 394

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE---PRSDTLGAFIGACKV 545
           +L +    I    E + C     G++  L +++ +   M IE   P   T  + +  C  
Sbjct: 395 DLYVKCSDIKTAHEFFLC----YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTT 450

Query: 546 HGSIGLAKWAAEKLLE 561
            G+  L +    ++L+
Sbjct: 451 LGATDLGEQIHTQVLK 466



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 132/281 (46%), Gaps = 29/281 (10%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ A+   A    L QG+Q+H+     G  + LS+ N ++ +Y +C    +    FD++ 
Sbjct: 542 FASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIY 601

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V+WN+L+SG    G        F +M    + ++  TF S + A     ++ +G++
Sbjct: 602 AKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ 661

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  I K G+     VS+AL+ LY KCG ++D             + WN M++ Y+ +  
Sbjct: 662 IHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGC 708

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-------RQIHGLVIKQSFDL 296
           G  A+ +F  M+   +  ++ TF  ++++C  +G    G        + H LV K     
Sbjct: 709 GFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEH-- 766

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
                  +VD+  ++G +  A R  + M  + + + W T++
Sbjct: 767 ----YACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLL 803


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 179/468 (38%), Positives = 275/468 (58%), Gaps = 1/468 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + S + AC Q+ ++E  R++H+ +    F  + F+ ++L+ +Y KC  V DAR VFD++ 
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +D+V W  +++ YA N +   AI +   M     K + FTF+SL+ + G    S  GRQ
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  +  DV V ++L+DMYA+ G +D A  VFD + +KN VSWN ++ GF + GD
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G  A+    +ML+  F     T +S+ SS   L    + + VHA+ IK+  +    + N 
Sbjct: 234 GESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+K GS+  A + F  V   DLVTW S++ A+A +GL KE++  FE+M    V  +
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLN 353

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I FL +L+ACSHGGLV EG RYF +M  +Y + P+ +HY  +  LLGR GLL  A   +
Sbjct: 354 QITFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALLGRAGLLNYALVFI 412

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP+EP +   GA + AC++H +  + ++AA+ + EL+P       L+ N+YAS   W 
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
             AR+R MM+     K P CSW+E+   +H FV++D +HPQA  +Y M
Sbjct: 473 AAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKM 520



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 201/385 (52%), Gaps = 3/385 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +   A+   L+  +++H+H+          L N ++H+Y KC++  D   +FD+MR
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++V+W +LI+G       V        ML    + +  TF SLL+A     D   GR+
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  +K G+  + +V SAL+D+Y +CG ++ A  VFD++  ++ V WN ++S +A    
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+ A+  F  M   G +  +FT+SS+ +S   LG+ + G+ +H  VIK    L   V  +
Sbjct: 234 GESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK+G++ DA +VFD +  K++V+WN+M+  F Q G G+EAV    +M +     +
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLN 353

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ-CF 422
           ++T   IL++C    +  E ++      +  ++  +     ++    + G +  AL   F
Sbjct: 354 QITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIF 413

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSK 447
               EP    W +++ A   H  +K
Sbjct: 414 KMPMEPTAAVWGALLAACRMHKNAK 438



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 8/175 (4%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
             +  LRN     E+TH     YS      A+ G L+QGK +H+H++K        + N 
Sbjct: 240 TFAEMLRNG---FEATHFT---YSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLD 161
           +L +Y K  +  D  K+FD +  +++VTWN++++       G     +F  M    V L+
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLN 353

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            ITF  +L AC     ++ G+R    + +            +V L G+ G +  A
Sbjct: 354 QITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYA 408



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 351 LLRDML---QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           +LRD+     G   P      S +++C       + R++HA+   +       ++N+LI+
Sbjct: 35  VLRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIH 94

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y KC S+  A   F  ++  D+V+WTS+I  YA + +  E+I +   ML    +P+   
Sbjct: 95  MYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFT 154

Query: 468 FLEVLSAC 475
           F  +L A 
Sbjct: 155 FASLLKAA 162


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 317/596 (53%), Gaps = 9/596 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+   L+ G QLH+ +MKLG  +   L N ++ +Y KC       ++FD M  RN+
Sbjct: 11  LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 70

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W  L+ G ++ G        F  M       +  T ++ L+AC        G ++H  
Sbjct: 71  VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC--GGGTRAGVQIHGV 128

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            ++ GF  +  V+++LV +Y K  +  DARRVFD +  R+L  WN M+S YA    G  +
Sbjct: 129 CVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDS 188

Query: 248 IAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ--SFDLDVLVATSL 304
           + VF  M R    + D FTF+SL+ +C  LG+++ G Q+H  +  +  S   + ++A +L
Sbjct: 189 LLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGAL 248

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+Y K   +  A +VFDG+  +N + W T++VG  Q G  +EA+ L R         D 
Sbjct: 249 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 308

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
             L+S+++     ++  + +QVH Y  K      +S+ N+L++ Y KCG    A + F  
Sbjct: 309 HVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFRE 368

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   ++V+WT++I     HG  +E+I++FE+M +  V  D +A+L +LSACSH GLV E 
Sbjct: 369 MPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDEC 428

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            RYF+ +  D  + P +EHY C+ DLLGR G L EA +L+ SMP+EP        + AC+
Sbjct: 429 RRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACR 488

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH  + + +   + LL ++   PVNY ++SN+ A    W +   +R  MR     K  GC
Sbjct: 489 VHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGC 548

Query: 605 SWIEIAGEIHTFV-SSDRSHPQAVHMYAMLCTVFGLMEEN-NVSGHCNVLDKEMDE 658
           SW E+  E+H F    D +HPQA  +   L  V   M E    SG       ++DE
Sbjct: 549 SWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDE 604



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 17/381 (4%)

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           RRM+ D           LLRA  +   +  G +LH+ ++K+GFG +  +++ L+D+Y KC
Sbjct: 4   RRMIAD-----------LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKC 52

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +  A  VFD +  R++V W  ++  +  +      + +F  MR  G   + FT S+ +
Sbjct: 53  GKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATL 112

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +CG  G ++ G QIHG+ ++  F+   +VA SLV MY+K     DA RVFD + ++N+ 
Sbjct: 113 KACG--GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLA 170

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           +WN+M+ G+   G GR+++ + R+M +     PDE T AS+L +C  L  + E  QVHA 
Sbjct: 171 TWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAA 230

Query: 390 AIKNGVQAFLS--IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
               GV    +  +  AL++ Y KC  +  A+Q F  ++  + + WT++I  +A  G  K
Sbjct: 231 MAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVK 290

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           E++ +F +  S  VR D      V++  +   LV +G +  +   +      D      L
Sbjct: 291 EAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQG-KQVHCYTAKTPAGLDVSVANSL 349

Query: 508 TDLLGRVGLLVEAYDLLASMP 528
            D+  + GL  EA      MP
Sbjct: 350 VDMYLKCGLTGEAGRRFREMP 370



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 16  KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAK 75
           +  + + T  +   Q   +  A    R   SS +R  G +           S  + V A 
Sbjct: 271 RNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHV----------LSSVVAVFAD 320

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           F  ++QGKQ+H +  K      +S+ N ++ +Y+KC    +  + F EM  RN+V+W  +
Sbjct: 321 FALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 380

Query: 136 ISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK-VG 192
           I+G+     G      F  M  + V  D + + +LL AC  +  ++  RR  S I +   
Sbjct: 381 INGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 440

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS 236
                   + +VDL G+ G + +A+ +   +     V +W  ++S
Sbjct: 441 MRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLS 485


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 185/496 (37%), Positives = 287/496 (57%), Gaps = 10/496 (2%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML      +  TF   +++C        G++LH  + K G  L  FV ++L+ +YGKC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 213 VEDARRVFDE-VLCRDL-VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           +++AR++FDE    R L V +N ++S YALN      + +F  MR  G++ +  T   LV
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
             CG  G+  LG  +HG  +K   D+D  V   L+ MY K+G ID   ++FD M  K ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSISCET-RQV 386
           +WN M+ G+ QNG     ++L ++M    FCPD +TL  +LSSC   G+LS+  E  R++
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
             +   +    FL+  NAL+N Y++CG++  A   F  +    +V+WT+IIG Y  HG  
Sbjct: 241 EGFGFSS--NPFLN--NALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQG 296

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           + ++ +F++M+   ++PD  AF+ VLSACSH GL ++GL YF +M   Y + P +EHY+C
Sbjct: 297 EVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSC 356

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + DLLGR G L EA +L+ SM +       GA +GACK+H ++ LA+ A E+++ELEP+ 
Sbjct: 357 MVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTN 416

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
              Y L+SNVY        + R+R +MR     K PGCS++E  G +H F + DR+HPQ 
Sbjct: 417 TGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQT 476

Query: 627 VHMYAMLCTVFGLMEE 642
             +Y  L  +  L+++
Sbjct: 477 NEIYKKLNELENLVKD 492



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 216/428 (50%), Gaps = 17/428 (3%)

Query: 57  ESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            S  S ++F +  A+K  A       GKQLH H+ K G   +  +Q  ++ +Y KC   D
Sbjct: 3   RSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLID 62

Query: 116 DMEKLFDE--MRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
           +  KLFDE     +  V +N+L+SG  + +   +V   F  M    V ++ +T   L++ 
Sbjct: 63  NARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQP 122

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C    ++ +G  +H F +K G  ++  V + L+ +Y K G ++  R++FDE+  + L+ W
Sbjct: 123 CGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITW 182

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N M++ YA N L +  + ++  M  +G   D  T   +++SC  LG+  +G+++   +  
Sbjct: 183 NAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEG 242

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
             F  +  +  +LV+MYA+ GN+  A  +FDGM  K+VVSW  ++ G+G +G G  AV L
Sbjct: 243 FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGL 302

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALI 406
             +M++G   PD     S+LS+C    ++ +           Y ++ G + +    + ++
Sbjct: 303 FDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHY----SCMV 358

Query: 407 NAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +   + G +  A +   S++   D   W +++GA   H   + +   FE+++   + P +
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIE--LEPTN 416

Query: 466 IAFLEVLS 473
             +  +LS
Sbjct: 417 TGYYVLLS 424


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 326/583 (55%), Gaps = 5/583 (0%)

Query: 28  QNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHS 87
           ++ ++   N+ ++  S + S L    T H S  + + F ++ +   AK G    G Q HS
Sbjct: 35  EHSSSRTFNSNQNTSSPVDSDLIAEFTRHGSLSNPY-FLNKIVSFCAKSGSFHLGIQAHS 93

Query: 88  HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI--INCGGN 145
            I+KLG  + + + + V+ +Y KC        LFD+M  R +VTWN+LI G   +NC   
Sbjct: 94  TILKLGFISNVYICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKI 153

Query: 146 VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD 205
               F +ML   + +   + +S L  C Q +  EVG ++H  ILK G G N  V ++LVD
Sbjct: 154 AIELFIKMLKAAINVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVD 213

Query: 206 LYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265
           +Y KCG V+D+R VFD ++ R+++ W  MV+ Y+     D A+A+   M L+ ++ +  T
Sbjct: 214 MYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVT 273

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGM 324
           ++SL++S           Q+H  +I+   + +V +A +LV +Y+K + +++D  +V   +
Sbjct: 274 YNSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVV 333

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
              + ++WN ++ G+ + G   EA++   +M Q     D  TL S++ + G+ S   E +
Sbjct: 334 MTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGK 393

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            +HA   + G  + L+++N L++ Y++CG+I  + + F  ++E D+++W +++ A+A HG
Sbjct: 394 AMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHG 453

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEH 503
             +E++E+FE+M    ++P+S  FL VL ACSH G V +G+ YF+ M SD  + P   EH
Sbjct: 454 YGREAVELFEQMRKTEIKPNSSTFLAVLCACSHVGFVDKGIEYFDTMKSDILLEPLKVEH 513

Query: 504 YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
           Y  L D  GR G L EA   + SMPI P      A + A  VHG+  +A  +A+KLLEL 
Sbjct: 514 YASLVDTFGRAGYLNEAEAFINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELW 573

Query: 564 PSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           P+ P  Y L+S+V   +  W D A LRK+M D    K PG SW
Sbjct: 574 PNDPATYVLLSSVLTVDGNWDDAADLRKLMCDRGLRKKPGYSW 616


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 196/619 (31%), Positives = 336/619 (54%), Gaps = 40/619 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  + +H+ ++K GL N     +++L + V    FD +     +F+ ++  N++ WNT+
Sbjct: 46  LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTM 105

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             G       V+     + + ++ L  +  TF  LL++C ++   + G+++H  +LK+G+
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFD-------------------------------E 222
            L+ FV ++L+ +Y + G +EDAR+VFD                               E
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +D+V WN M+S YA       A+ +F  M    ++ D  T  ++V++C   GS +LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  +    F  ++ +  SL+D+Y+K G ++ AC +F+G+  K+V+SWNT++ G+   
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY---AIKNGVQAFL 399
              +EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y    +K+   A  
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNAS- 404

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           S+  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  + ++F +M   
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKI 464

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + PD I F+ +LSACS  G++  G   F  M  DY I P  EHY C+ DLLG  GL  E
Sbjct: 465 GIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKE 524

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A +++ +M +EP      + + ACK+ G++ L +  A+ L+++EP  P  Y L+SN+YA+
Sbjct: 525 AEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYAT 584

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W +VA++R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y ML  +  L
Sbjct: 585 AGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVL 644

Query: 640 MEENNVSGHCNVLDKEMDE 658
           +E+       + + +EM+E
Sbjct: 645 LEKAGFVPDTSEVLQEMEE 663



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 206/412 (50%), Gaps = 37/412 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK    ++G+Q+H H++KLG    L +   ++ VYV+        K FD       
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDV 200

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                              +KLFDE+ V+++V+WN +ISG    G        F+ M+  
Sbjct: 201 VSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT 260

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N+R D  T  +++ AC Q+  IE+GR++HS+I   GFG N  + ++L+DLY KCG +E A
Sbjct: 261 NIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F+ +L +D++ WN ++  Y    L   A+ +F  M   G + +  T  S++ +C  L
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHL 380

Query: 277 GSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K  +S      + TSL+DMYAK G+I+ A +VF+ +  K++ SWN 
Sbjct: 381 GAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN- 393
           M+ GF  +G    A  +   M +    PD++T   +LS+C    +    R +     ++ 
Sbjct: 441 MIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDY 500

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +   L     +I+     G    A +   +++ EPD V W S++ A    G
Sbjct: 501 KITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRG 552



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 212/420 (50%), Gaps = 47/420 (11%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED---ARRVFDEV 223
           SLL  C     +   R +H+ ++K G     +  S L++L       +    A  VF+ +
Sbjct: 38  SLLHNCKTLQSL---RLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETI 94

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              +L++WN M   +AL+     A+ ++  M   G+  + +TF  L+ SC    + K G+
Sbjct: 95  QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQ 154

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV----------------------- 320
           QIHG V+K  +DLD+ V TSL+ +Y +NG ++DA +V                       
Sbjct: 155 QIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRG 214

Query: 321 --------FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
                   FD +  K+VVSWN M+ G+ + G+ +EA++L ++M++ +  PDE T+ +++S
Sbjct: 215 YIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVS 274

Query: 373 SC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +C   GS+ +    RQVH++   +G  + L I N+L++ YSKCG +  A   F  +   D
Sbjct: 275 ACAQSGSIELG---RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKD 331

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +++W ++IG Y    L KE++ +F++ML    RP+ +  L +L AC+H G +  G R+ +
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIG-RWIH 390

Query: 490 LMISDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           + I          S   T L D+  + G +  A+ +  S+ +     +  A I    +HG
Sbjct: 391 VYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHG 449



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 173/400 (43%), Gaps = 52/400 (13%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G ++ G+Q+HS I   G  + L + N ++ +Y KC   +    LF+ +  +++++WN
Sbjct: 277 AQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWN 336

Query: 134 TLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI--- 188
           TLI G   +N        F+ ML    R + +T  S+L AC     I++GR +H +I   
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 396

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           LK     +   +S L+D+Y KCG +E A +VF+ +L + L  WN M+  +A++   D A 
Sbjct: 397 LKSATNASSLRTS-LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAF 455

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F+ MR  G++ D  TF  L+++C   G   LGR I   + +                 
Sbjct: 456 DIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ----------------- 498

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
                        D      +  +  M+   G +G  +EA +++ +M      PD V   
Sbjct: 499 -------------DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNM---EMEPDGVIWC 542

Query: 369 SILSSCG-----SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           S+L +C       L  S     +       G    LS   A    +++   I   L   G
Sbjct: 543 SLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKG 602

Query: 424 SVKEP-------DLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             K P       D V    IIG   FH  ++E   + E+M
Sbjct: 603 MKKVPGCSSIEIDSVVHEFIIGD-KFHPRNREIYGMLEEM 641


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 202/643 (31%), Positives = 335/643 (52%), Gaps = 23/643 (3%)

Query: 8   PPIFTVHFKRPLSYL---TPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHS 64
           PP  +  F +  SY      AL   +    +  +  D       LR+  T+  +      
Sbjct: 24  PPPTSAAFDKGTSYQRSSAQALENGRLEHESPPRPLDAQEAMGMLRDGQTVQSA------ 77

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y   L    + G L   + LH H++K G    + +   +++VY++C +  D  +LFD M
Sbjct: 78  MYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGM 137

Query: 125 RVRNIVTWNTLISG-IINCGGNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             +N+VTW  LI+G  +N    +    F  ML       H T   +L AC  A  I++G+
Sbjct: 138 PDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQ 197

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALN 241
           ++H + +K G      + ++L  LY K G +E   R F     ++++ W  M+S C    
Sbjct: 198 QVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDE 257

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              D  +++F  M   G+  + FT +S+++ CG      LG+Q+     K   + ++ V 
Sbjct: 258 NYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVK 317

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----------GREAVK 350
            S + +Y + G  D+A R+F+ M + ++++WN M+ G+ Q  D           G +A+K
Sbjct: 318 NSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALK 377

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L RD+++    PD  T +SILS C ++    +  Q+HA  IK G  + + + +AL+N Y+
Sbjct: 378 LFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYN 437

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCGSI  A + F  +     VTWTS+I  Y+ HG S+++I++FE M+    RP+ I F+ 
Sbjct: 438 KCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVS 497

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +LSACS+ GLV E  RYF++M ++YHI P  +HY C+ D+  R+G L +A+  +     E
Sbjct: 498 LLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFE 557

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P      + +  C+ HG++ LA +AA++LLEL+P     Y L+ N+Y S   W DVAR+R
Sbjct: 558 PNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVR 617

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K+ +      +   SWI I  +++ F + D +HPQA  +Y +L
Sbjct: 618 KLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLL 660


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 310/573 (54%), Gaps = 9/573 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV-- 126
           AL   A    L  G ++H  ++K G+ +   L + ++ +Y+KC    + E +F+ +R   
Sbjct: 148 ALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNE 207

Query: 127 ---RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
              RN+  WN +I G ++  C       F  ML   +  D  T   +L  C Q  D+ VG
Sbjct: 208 LVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVG 267

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW-NVMVSCYAL 240
           +++H  IL +G   +  V +AL+++Y KCG  E + ++F      +LV+W +VM++C A 
Sbjct: 268 KQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNC-AQ 326

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N   + A+  F+   L+    D     + + +C  L     G  IHG  IK  FD DV V
Sbjct: 327 NGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFV 386

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +LVD Y K G+++ A +VF G++ +++VSWN ++ GF QN    EA+K  RDM     
Sbjct: 387 GGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQI 446

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+ VT+A ILS C  LS+    ++VH Y +++  +    + N+LI+AY+KCG I  +  
Sbjct: 447 KPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRT 506

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   + VTW SI+  +  HG + E    FEKM    ++PD   F  +LS+CSH G 
Sbjct: 507 VFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGK 566

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V  G +YFN M+ DY++ P  E YTC+ DLLGR G L +AYDL+ SMP  P     G+ +
Sbjct: 567 VDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLL 626

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            +CK HG+  LA+  A  + EL+ S      L++N+Y       +V R+R  ++     K
Sbjct: 627 ASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKK 686

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PGCSWIE+   IH FV+ D SH ++  +YA +
Sbjct: 687 QPGCSWIEVDNSIHIFVAGDYSHDRSGDIYATI 719



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 224/422 (53%), Gaps = 9/422 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           F+   +K       + +GKQ+H H++K G    + ++N +L +Y KC A  +   +F+ M
Sbjct: 41  FFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERM 100

Query: 125 RVRNIVTWNTLISGIINCGGNVTP--YFRRMLLD--NVRLDHITFNSLLRACVQADDIEV 180
             R+ V+WNT+ISG    G  V     FRRM+ +      + +   + L +C     +  
Sbjct: 101 EERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTH 160

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD-----EVLCRDLVLWNVMV 235
           G  +H F++K G   + F+ SAL+++Y KCG +++A  VF+     E++ R++ +WNVM+
Sbjct: 161 GLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMI 220

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
             Y  N     A+ +F  M   G+  D  T   ++  C  L    +G+QIHGL++    D
Sbjct: 221 LGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLD 280

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            DV V T+L++MY K G+ + + ++F      N+V W ++++   QNG   EA++   + 
Sbjct: 281 DDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEF 340

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           +     PD V L + L +C  LS+      +H +AIK G  + + +  AL++ Y KCG +
Sbjct: 341 MLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDM 400

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A Q F  +   DLV+W ++I  +A +  + E+++ F  M S  ++P+++    +LS C
Sbjct: 401 EYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVC 460

Query: 476 SH 477
           +H
Sbjct: 461 TH 462


>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 598

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 196/547 (35%), Positives = 308/547 (56%), Gaps = 32/547 (5%)

Query: 82  GKQLHS-HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G++L S H ++   C    L++    V +K     +   LFD+M  RN+VTW  +I+   
Sbjct: 50  GQKLSSLHPIEESFCPSHFLKSSFNKVSIK-----EPHALFDKMPQRNVVTWTAMITS-- 102

Query: 141 NCGGNVTPYFRRMLLDNVRLDHI----TFNSLLRACVQADDIEVGRRLHSFILKVGF-GL 195
                          +N R +H+     F  +LR  V+A  +  G+ +HS  +K+G  G 
Sbjct: 103 ---------------NNSRNNHMRAWSVFPQMLRDGVKA--LSCGQLVHSLAIKIGVQGS 145

Query: 196 NCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           + +V ++L+D+Y  C   ++ AR VFD++  +  V W  +++ Y       G + VF  M
Sbjct: 146 SVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQM 205

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            LE      F+FS    +C ++GS  LG+Q+H  V+K  F+ ++ V  S++DMY K    
Sbjct: 206 FLEEGALSLFSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCE 265

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            +A R+F  MT K+ ++WNT++ GF +  D RE++ +   M+     PD  +  S + +C
Sbjct: 266 SEAKRLFSVMTHKDTITWNTLIAGF-EALDSRESLCIFSRMVSEGLXPDCFSFTSAVGAC 324

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            +L++    +Q+H   +++G+  +L I NALI  Y+KCG+IA + + F  +   +LV+WT
Sbjct: 325 ANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWT 384

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           S+I  Y  HG  K+++E+F +M+   ++PD + F+ VLSACSH GLV EGLRYF LM S 
Sbjct: 385 SMINGYGDHGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSY 444

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y+I PD E Y C+ DL GR G + EAY L+ +MP  P      A +GACKVH    +AK+
Sbjct: 445 YNITPDIEIYGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVHNQPSVAKF 504

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA + L+++P     YAL+SN+YA+E  W D A   K+ R   +    G SWIE+  +I 
Sbjct: 505 AALRALDMKPISAGTYALISNIYAAEGNWDDFASSTKLRRGIKNKSDSGRSWIELKDQIC 564

Query: 615 TFVSSDR 621
           +FV  DR
Sbjct: 565 SFVVGDR 571



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 152/315 (48%), Gaps = 44/315 (13%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A +  A  G    GKQ+H+ ++K G  + L + N +L +Y KC    + ++LF  M 
Sbjct: 217 FSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSVMT 276

Query: 126 VRNIVTWNTLISGIINCGGNVTP-YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++ +TWNTLI+G        +   F RM+ + +  D  +F S + AC     +  G++L
Sbjct: 277 HKDTITWNTLIAGFEALDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCGQQL 336

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I++ G      +S+AL+ +Y KCG + D+R++F ++ C +LV W  M++ Y  +  G
Sbjct: 337 HGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDHGYG 396

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +FN M   G+K D   F +++++C                               
Sbjct: 397 KDAVELFNEMIRSGIKPDKMVFMAVLSAC------------------------------- 425

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG-----FGQNGDGREAVKLLRDMLQGS 359
               +  G +D+  R F  MT+   ++ +  + G     FG+ G  +EA +L+ +M    
Sbjct: 426 ----SHAGLVDEGLRYFRLMTSYYNITPDIEIYGCVVDLFGRAGRVKEAYQLIENM---P 478

Query: 360 FCPDEVTLASILSSC 374
           F PDE   A++L +C
Sbjct: 479 FNPDESIWAALLGAC 493



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 14/232 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ A+   A    L  G+QLH  I++ GL N L + N ++++Y KC    D  K+F +M 
Sbjct: 317 FTSAVGACANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMP 376

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+V+W ++I+G  +   G +    F  M+   ++ D + F ++L AC  A  ++ G R
Sbjct: 377 CTNLVSWTSMINGYGDHGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLR 436

Query: 184 LHSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALN 241
               +        +  +   +VDL+G+ G V++A ++ + +    D  +W  ++   A  
Sbjct: 437 YFRLMTSYYNITPDIEIYGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLG--ACK 494

Query: 242 CLGDGAIAVFNLMRLEGMK----GDYFTFSSLVNSCGTL----GSSKLGRQI 285
                ++A F  +R   MK    G Y   S++  + G       S+KL R I
Sbjct: 495 VHNQPSVAKFAALRALDMKPISAGTYALISNIYAAEGNWDDFASSTKLRRGI 546


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 337/588 (57%), Gaps = 8/588 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +FYS  +  SA    L   + +H++++K G      L ++++  Y+KC +  +  KLFDE
Sbjct: 2   NFYSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSF-LGHKLIDGYIKCGSLAEARKLFDE 60

Query: 124 MRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +  R+IVTWN++IS  I+ G +     ++  ML++ V  D  TF+++ +A  Q   I  G
Sbjct: 61  LPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHG 120

Query: 182 RRLHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           +R H   + +G   L+ FV+SALVD+Y K   + DA  VF  VL +D+VL+  ++  YA 
Sbjct: 121 QRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQ 180

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           + L   A+ +F  M   G+K + +T + ++ +CG LG    G+ IHGLV+K   +  V  
Sbjct: 181 HGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVAS 240

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            TSL+ MY++   I+D+ +VF+ +   N V+W + VVG  QNG    AV + R+M++ S 
Sbjct: 241 QTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSI 300

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+  TL+SIL +C SL++     Q+HA  +K G+        ALIN Y KCG++  A  
Sbjct: 301 SPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARS 360

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  + E D+V   S+I AYA +G   E++E+FE++ +  + P+ + F+ +L AC++ GL
Sbjct: 361 VFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGL 420

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG + F  + ++++I    +H+TC+ DLLGR   L EA  L+  +   P        +
Sbjct: 421 VEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLL 479

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            +CK+HG + +A+    K+LEL P     + L++N+YAS   W  V  ++  +RD    K
Sbjct: 480 NSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKK 539

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
            P  SW+++  E+HTF++ D SHP+++ ++ ML    GLM++    G+
Sbjct: 540 SPAMSWVDVDREVHTFMAGDLSHPRSLEIFEML---HGLMKKVKTLGY 584


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 323/581 (55%), Gaps = 6/581 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMK-LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           ALK   +   ++ G+ +H  + K + L + L + + ++++YVKC    +  ++F+E+   
Sbjct: 47  ALKACGELREVKYGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKP 106

Query: 128 NIVTWNTLISGIINCGG--NVTPYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +IVTW++++SG    G       +FRRM    +V  D +T  +L+ AC +  +  +GR +
Sbjct: 107 DIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCV 166

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H F+++ GF  +  + ++L++ Y K    ++A  +F  +  +D++ W+ +++CY  N   
Sbjct: 167 HGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAA 226

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ VFN M  +G + +  T   ++ +C      + GR+ H L I++  + +V V+T+L
Sbjct: 227 AEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTAL 286

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPD 363
           VDMY K  + ++A  VF  +  K+VVSW  ++ GF  NG    +++    ML + +  PD
Sbjct: 287 VDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPD 346

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + +  +L SC  L    +    H+Y IK G  +   I  +L+  YS+CGS+  A + F 
Sbjct: 347 AILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN 406

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVS 482
            +   D V WTS+I  Y  HG   +++E F  M+ S  V+P+ + FL +LSACSH GL+ 
Sbjct: 407 EIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIH 466

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGLR F LM++DY + P+ EHY  L DLLGRVG L  A ++   MP  P    LG  +GA
Sbjct: 467 EGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGA 526

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H +  +A+  A++L ELE +    Y L+SN+Y  +  W +V +LR  ++     K  
Sbjct: 527 CRIHQNGEMAETVAKQLFELESNHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGL 586

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
             S IEI  ++H FV+ D  HP+   +Y +L  +   M+EN
Sbjct: 587 AESLIEIRRKVHKFVADDDLHPEKEPVYGLLKELDLHMKEN 627



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 201/366 (54%), Gaps = 5/366 (1%)

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  R +  WNTL+  +        V  +F +M  D  + D+ T    L+AC +  +++ G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 182 RRLHSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
             +H F+ K V  G + +V S+L+ +Y KCG + +A R+F+E+   D+V W+ MVS +  
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 241 NCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           N     A+  F  M     +  D  T  +LV++C  L +S+LGR +HG V+++ F  D+ 
Sbjct: 121 NGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLS 180

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  SL++ YAK+    +A  +F  M  K+V+SW+T++  + QNG   EA+++  +M+   
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDG 240

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+  T+  +L +C + +   + R+ H  AI+ G++  + +  AL++ Y KC S   A 
Sbjct: 241 TEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAY 300

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSIAFLEVLSACSHG 478
             F  + + D+V+W ++I  +  +G++  SIE F  M L +  RPD+I  L+VL +CS  
Sbjct: 301 AVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSEL 360

Query: 479 GLVSEG 484
           G + + 
Sbjct: 361 GFLKQA 366



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 159/305 (52%), Gaps = 3/305 (0%)

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R L  WN ++   + +   +  +  F+ M  +  K D FT    + +CG L   K G  I
Sbjct: 4   RTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMI 63

Query: 286 HGLVIKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           HG + K  +   D+ V +SL+ MY K G + +A R+F+ +   ++V+W++MV GF +NG 
Sbjct: 64  HGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGS 123

Query: 345 GREAVKLLRDMLQGS-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
             +AV+  R M   S   PD VTL +++S+C  LS S   R VH + ++ G    LS+ N
Sbjct: 124 PYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVN 183

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +L+N Y+K  +   A+  F  + E D+++W+++I  Y  +G + E++ VF +M+     P
Sbjct: 184 SLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEP 243

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           +    L VL AC+    + +G +   L I    +  + +  T L D+  +     EAY +
Sbjct: 244 NVATVLCVLQACAAANDLEQGRKTHELAIRK-GLETEVKVSTALVDMYMKCFSPEEAYAV 302

Query: 524 LASMP 528
            + +P
Sbjct: 303 FSRIP 307


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 316/596 (53%), Gaps = 9/596 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+   L+ G QLH+ +MKLG  +   L N ++ +Y KC       ++FD M  RN+
Sbjct: 11  LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 70

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W  L+ G ++ G        F  M       +  T ++ L+AC        G ++H  
Sbjct: 71  VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC--GGGTRAGVQIHGV 128

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            ++ GF  +  V+++LV +Y K  +  DARRVFD +  R+L  WN M+S YA    G  +
Sbjct: 129 CVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDS 188

Query: 248 IAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ--SFDLDVLVATSL 304
           + VF  M R    + D FTF+SL+ +C  LG+++ G Q+H  +  +  S   + ++A +L
Sbjct: 189 LLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGAL 248

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+Y K   +  A +VFDG+  +N + W T++VG  Q G  +EA+ L R         D 
Sbjct: 249 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 308

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
             L+S+++     ++  + +QVH Y  K      +S+ N+L++ Y KCG    A + F  
Sbjct: 309 HVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFRE 368

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   ++V+WT++I     HG  +E+I++FE+M    V  D +A+L +LSACSH GLV E 
Sbjct: 369 MPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDEC 428

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            RYF+ +  D  + P +EHY C+ DLLGR G L EA +L+ SMP+EP        + AC+
Sbjct: 429 RRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACR 488

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH  + + +   + LL ++   PVNY ++SN+ A    W +   +R  MR     K  GC
Sbjct: 489 VHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGC 548

Query: 605 SWIEIAGEIHTFV-SSDRSHPQAVHMYAMLCTVFGLMEEN-NVSGHCNVLDKEMDE 658
           SW E+  E+H F    D +HPQA  +   L  V   M E    SG       ++DE
Sbjct: 549 SWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDE 604



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 17/381 (4%)

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           RRM+ D           LLRA  +   +  G +LH+ ++K+GFG +  +++ L+D+Y KC
Sbjct: 4   RRMIAD-----------LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKC 52

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +  A  VFD +  R++V W  ++  +  +      + +F  MR  G   + FT S+ +
Sbjct: 53  GKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATL 112

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +CG  G ++ G QIHG+ ++  F+   +VA SLV MY+K     DA RVFD + ++N+ 
Sbjct: 113 KACG--GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLA 170

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           +WN+M+ G+   G GR+++ + R+M +     PDE T AS+L +C  L  + E  QVHA 
Sbjct: 171 TWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAA 230

Query: 390 AIKNGVQAFLS--IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
               GV    +  +  AL++ Y KC  +  A+Q F  ++  + + WT++I  +A  G  K
Sbjct: 231 MAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVK 290

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           E++ +F +  S  VR D      V++  +   LV +G +  +   +      D      L
Sbjct: 291 EAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQG-KQVHCYTAKTPAGLDVSVANSL 349

Query: 508 TDLLGRVGLLVEAYDLLASMP 528
            D+  + GL  EA      MP
Sbjct: 350 VDMYLKCGLTGEAGRRFREMP 370



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 16  KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAK 75
           +  + + T  +   Q   +  A    R   SS +R  G +           S  + V A 
Sbjct: 271 RNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHV----------LSSVVAVFAD 320

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           F  ++QGKQ+H +  K      +S+ N ++ +Y+KC    +  + F EM  RN+V+W  +
Sbjct: 321 FALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 380

Query: 136 ISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK-VG 192
           I+G+     G      F  M  + V  D + + +LL AC  +  ++  RR  S I +   
Sbjct: 381 INGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 440

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS 236
                   + +VDL G+ G + +A+ +   +     V +W  ++S
Sbjct: 441 MRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLS 485


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/603 (33%), Positives = 324/603 (53%), Gaps = 20/603 (3%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFY--SQALKVSAKFGFLQQGKQLHSH 88
           TT I    K  RS +S +L +     +  H     Y  S  L       FL+ GKQ+H +
Sbjct: 211 TTIIAGYSKQGRSQVSLKLFDQ---MKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCY 267

Query: 89  IMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP 148
           +++ G+   +S+ N  +  Y KC       KLFD M  +N+V+W T+I+G   C  N   
Sbjct: 268 VLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAG---CMQNS-- 322

Query: 149 YFRRMLLD-NVRLDHITFN-------SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            F R  LD  V +  + +N       S+L +C     +E GR++H++ +KV    + FV 
Sbjct: 323 -FHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVK 381

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + L+D+Y KC  + DAR+VF+ +   DLV +N M+  Y+       A+ +F  MRL    
Sbjct: 382 NGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSS 441

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
                F SL+    +L   +L  QIHGL+IK    LD    ++L+D+Y+K   + DA  V
Sbjct: 442 PTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLV 501

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+ +  K++V W  M  G+ Q  +  E++KL + +      P+E T A+++++  +++  
Sbjct: 502 FEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASL 561

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              +Q H   IK G      + N L++ Y+K GSI  A + F S    D   W S+I  Y
Sbjct: 562 RHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATY 621

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG ++++++VFE M+   ++P+ + F+ VLSACSH GL+  G  +F+ M S + I P 
Sbjct: 622 AQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSM-SQFGIEPG 680

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHY C+  LLGR G L EA + +  MPI+  +    + + AC+V G++ L  +AAE  +
Sbjct: 681 IEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAI 740

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
              P+   +Y L+SN++AS+  W +V RLR+ M  +   K PGCSWIE+  EIH F++ D
Sbjct: 741 SCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKD 800

Query: 621 RSH 623
            +H
Sbjct: 801 TAH 803



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 233/462 (50%), Gaps = 3/462 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  ++   +FG L    Q+H  ++K G    + +   ++  Y K    DD   LFD ++V
Sbjct: 145 ASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQV 204

Query: 127 RNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +   TW T+I+G    G +      F +M   +V  D    +S+L AC+    +E G+++
Sbjct: 205 KTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQI 264

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H ++L+ G  ++  + +  +D Y KC  V+  R++FD ++ +++V W  +++    N   
Sbjct: 265 HCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFH 324

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M   G   D F  +S++NSCG+L + + GRQ+H   IK + D D  V   L
Sbjct: 325 RDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGL 384

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK  ++ DA +VF+ M A ++VS+N M+ G+ +     EA+ L R+M      P  
Sbjct: 385 IDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTL 444

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +   S+L    SL     + Q+H   IK GV       +ALI+ YSKC  +  A   F  
Sbjct: 445 LIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEE 504

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +++ D+V WT++   Y     ++ES+++++ +    ++P+   F  V++A S+   +  G
Sbjct: 505 IQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHG 564

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            ++ N +I       D      L D+  + G + EA+    S
Sbjct: 565 QQFHNQVIK-MGFDDDPFVANTLVDMYAKSGSIEEAHKAFIS 605



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 209/394 (53%), Gaps = 4/394 (1%)

Query: 83  KQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           K++HS I+  G   + + L N +LH Y K    +   KLFD M  +N+VTW++++S    
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             +C   +  + + M   N + +     S++RAC Q   +    ++H  ++K G+  + +
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+D Y K   ++DAR +FD +  +    W  +++ Y+       ++ +F+ M+   
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D +  SS++++C  L   + G+QIH  V++    +DV +    +D Y K   +    
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGR 297

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD M  KNVVSW T++ G  QN   R+A+ L  +M +  + PD     S+L+SCGSL 
Sbjct: 298 KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLV 357

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + RQVHAYAIK  +     ++N LI+ Y+KC S+  A + F  +   DLV++ ++I 
Sbjct: 358 ALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIE 417

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
            Y+      E++++F +M      P  + F+ +L
Sbjct: 418 GYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLL 451



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 197/414 (47%), Gaps = 42/414 (10%)

Query: 173 VQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           +Q+  I   +++HS I+  GF   + F+ + L+  Y K   V  A ++FD +  ++LV W
Sbjct: 49  LQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTW 108

Query: 232 NVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           + MVS Y  +     A+ +F   MR    K + +  +S+V +C   G      QIHGLV+
Sbjct: 109 SSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVV 168

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K  +  DV V TSL+D Y K+  IDDA  +FDG+  K   +W T++ G+ + G  + ++K
Sbjct: 169 KGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLK 228

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L   M +G  CPD+  L+S+LS+C  L      +Q+H Y +++G+   +S+ N  I+ Y 
Sbjct: 229 LFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYF 288

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KC  +    + F  + + ++V+WT++I     +   ++++++F +M      PD+     
Sbjct: 289 KCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTS 348

Query: 471 VLSACS--------------------------HGGLV---------SEGLRYFNLMISDY 495
           VL++C                             GL+         ++  + FNLM +  
Sbjct: 349 VLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA-- 406

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
               D   Y  + +   R   L EA DL   M +   S TL  F+    V  S+
Sbjct: 407 ---IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASL 457


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/501 (36%), Positives = 286/501 (57%), Gaps = 2/501 (0%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  T + LL+ C +   + VG+  H   +  G   +    + L++LY KCG  + ARRV
Sbjct: 54  IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRV 113

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD +  R ++ WN M++ Y  N     A+ +F+ M  EG +   FT SS + +C    + 
Sbjct: 114 FDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAI 173

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
              +Q+H + IK + D    V T+ +D+YAK   I DAC VF+ M  K  V+W+++  GF
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QNG   E + L +   +      E T++SILS+C SL++  E  QVHA  +K+G    L
Sbjct: 234 VQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNL 293

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +  +L++ Y+KCG I  + + F  ++E ++V W ++I +++ H  S E++ +FEKM   
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P+ + +L +LSACSH GLV EG  YFNL++SD    P+  HY+C+ D+LGR G   E
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDE 413

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A+ LL  MP EP +   G+ +G+ ++H +I LA+ AAE+L  LEP    N+ L+SNVYA+
Sbjct: 414 AWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAA 473

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W +V   RK +RD+   K  G SWIE  G+IH FV+ +R HP    +Y  L  ++  
Sbjct: 474 SGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHE 533

Query: 640 MEE--NNVSGHCNVLDKEMDE 658
           M +  +  +  C++ D   D+
Sbjct: 534 MRKISHRANTQCDLHDVHADQ 554



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 194/380 (51%), Gaps = 4/380 (1%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           + L++ AK   L  GK  H   +  GL       N ++++Y KC   D   ++FD M VR
Sbjct: 61  ELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVR 120

Query: 128 NIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +I++WNT+I+G  +   +V     F RM  +  ++   T +S L AC     I   ++LH
Sbjct: 121 SIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLH 180

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +  +K+    + FV +A +D+Y KC  ++DA  VF+ +  +  V W+ + + +  N L +
Sbjct: 181 TIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHE 240

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             + +F   + EGM+   FT SS++++C +L     G Q+H +++K  F  ++ VATSLV
Sbjct: 241 EVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLV 300

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+YAK G I+ +  VF  M  KNVV WN M+  F ++    EA+ L   M Q    P+EV
Sbjct: 301 DVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEV 360

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           T  SILS+C    +  E R      + +   +  +   + +++   + G    A +    
Sbjct: 361 TYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDK 420

Query: 425 VK-EPDLVTWTSIIGAYAFH 443
           +  EP    W S++G+   H
Sbjct: 421 MPFEPTASMWGSLLGSSRIH 440



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 3/277 (1%)

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           NL+R+E    D FT   L+  C    S  +G+  HGL I      D +    L+++Y K 
Sbjct: 45  NLVRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKC 104

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G  D A RVFD M+ ++++SWNTM+ G+  N +  EA+KL   M +      E TL+S L
Sbjct: 105 GQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTL 164

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +C +     E +Q+H  AIK  + +   +  A ++ Y+KC  I  A   F ++ E   V
Sbjct: 165 CACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSV 224

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           TW+S+   +  +GL +E + +F+      ++        +LS C+   L+ EG +   ++
Sbjct: 225 TWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVI 284

Query: 492 ISD-YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           +   +H   +    T L D+  + G + ++Y++ A M
Sbjct: 285 VKHGFH--RNLFVATSLVDVYAKCGQIEKSYEVFADM 319



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A    + +G Q+H+ I+K G    L +   ++ VY KC   +   ++F +M  
Sbjct: 262 SSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEE 321

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N+V WN +I+       +      F +M    +  + +T+ S+L AC     +E GR  
Sbjct: 322 KNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHY 381

Query: 185 HSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            + +L       N    S +VD+ G+ G  ++A ++ D++
Sbjct: 382 FNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKM 421


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 320/588 (54%), Gaps = 7/588 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H  ++K+G  + + + N +L +Y       +   +F +M  +++++WN+L++  +N
Sbjct: 370 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 429

Query: 142 CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G ++        M+     ++++TF S L AC   D  E GR LH  ++  G   N  +
Sbjct: 430 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 489

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV +YGK G + ++RRV  ++  RD+V WN ++  YA +   D A+A F  MR+EG+
Sbjct: 490 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 549

Query: 260 KGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
             +Y T  S++++C   G   + G+ +H  ++   F+ D  V  SL+ MYAK G++  + 
Sbjct: 550 SSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQ 609

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+G+  +N+++WN M+     +G G E +KL+  M       D+ + +  LS+   L+
Sbjct: 610 DLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLA 669

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  E +Q+H  A+K G +    I NA  + YSKCG I   ++         L +W  +I 
Sbjct: 670 VLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILIS 729

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A   HG  +E    F +ML   ++P  + F+ +L+ACSHGGLV +GL Y++++  D+ + 
Sbjct: 730 ALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLE 789

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EH  C+ DLLGR G L EA   ++ MP++P      + + +CK+HG++   + AAE 
Sbjct: 790 PAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAEN 849

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L +LEP     Y L SN++A+   W DV  +RK M      K   CSW+++  ++ +F  
Sbjct: 850 LSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGI 909

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            DR+HPQ + +YA L  +  L++E+    + S      D+E  E  LW
Sbjct: 910 GDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLW 957



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 234/473 (49%), Gaps = 13/473 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q+   ++K GL +KL+++N ++ +       D    +FD+M  R+ ++WN++ +    
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 328

Query: 142 CGGNVTPYFR-----RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             G++   FR     R   D V  +  T ++LL      D  + GR +H  ++K+GF   
Sbjct: 329 -NGHIEESFRIFSLMRRFHDEV--NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV 385

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V + L+ +Y   G   +A  VF ++  +DL+ WN +++ +  +     A+ +   M  
Sbjct: 386 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS 445

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G   +Y TF+S + +C T    + GR +HGLV+      + ++  +LV MY K G + +
Sbjct: 446 SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 505

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           + RV   M  ++VV+WN ++ G+ ++ D  +A+   + M       + +T+ S+LS+C  
Sbjct: 506 SRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLL 565

Query: 377 LSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                E  + +HAY +  G ++   ++N+LI  Y+KCG ++ +   F  +   +++TW +
Sbjct: 566 PGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNA 625

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++ A A HG  +E +++  KM S  V  D  +F E LSA +   ++ EG +   L +   
Sbjct: 626 MLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK-L 684

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHG 547
               DS  +    D+  + G + E   +L   P   RS  +    I A   HG
Sbjct: 685 GFEHDSFIFNAAADMYSKCGEIGEVVKMLP--PSVNRSLPSWNILISALGRHG 735



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 212/446 (47%), Gaps = 23/446 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            ++G Q+H  + K GL + + +   +LH+Y          K+F+EM  RN+V+W +L+ G
Sbjct: 190 FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVG 249

Query: 139 IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             + G    P     ++D  +                 D  +GR++   ++K G      
Sbjct: 250 YSDKG---EP---EEVIDIYK-----------------DESLGRQIIGQVVKSGLESKLA 286

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+ + G  G V+ A  +FD++  RD + WN + + YA N   + +  +F+LMR   
Sbjct: 287 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 346

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            + +  T S+L++  G +   K GR IHGLV+K  FD  V V  +L+ MYA  G   +A 
Sbjct: 347 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEAN 406

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF  M  K+++SWN+++  F  +G   +A+ LL  M+      + VT  S L++C +  
Sbjct: 407 LVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 466

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + R +H   + +G+     I NAL++ Y K G ++ + +    +   D+V W ++IG
Sbjct: 467 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 526

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            YA      +++  F+ M    V  + I  + VLSAC   G + E  +  +  I      
Sbjct: 527 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 586

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLL 524
            D      L  +  + G L  + DL 
Sbjct: 587 SDEHVKNSLITMYAKCGDLSSSQDLF 612



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 230/491 (46%), Gaps = 65/491 (13%)

Query: 75  KFGFLQ-----QGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           + GF Q      G+ +H+  +K GL  +LS+   N ++++Y K         LFD M VR
Sbjct: 79  QIGFSQITIETTGRAVHALCVK-GLV-RLSVLHTNTLINMYTKFGRVKPARHLFDIMPVR 136

Query: 128 NIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDI-EVGRRL 184
           N V+WNT++SGI+  G  +    +FR+M    ++       SL+ AC ++  +   G ++
Sbjct: 137 NEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQV 196

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H F+ K G   + +VS+A++ LYG  G V  +R+VF+E+  R++V W  ++  Y+     
Sbjct: 197 HGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEP 256

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           +  I ++                             LGRQI G V+K   +  + V  SL
Sbjct: 257 EEVIDIYK-------------------------DESLGRQIIGQVVKSGLESKLAVENSL 291

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + M    GN+D A  +FD M+ ++ +SWN++   + QNG   E+ ++   M +     + 
Sbjct: 292 ISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNS 351

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T++++LS  G +      R +H   +K G  + + + N L+  Y+  G    A   F  
Sbjct: 352 TTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQ 411

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-------- 476
           +   DL++W S++ ++   G S +++ +   M+S     + + F   L+AC         
Sbjct: 412 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 471

Query: 477 ---HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
              HG +V  GL ++N +I +            L  + G++G + E+  +L  M   PR 
Sbjct: 472 RILHGLVVVSGL-FYNQIIGN-----------ALVSMYGKIGEMSESRRVLLQM---PRR 516

Query: 534 DTLG--AFIGA 542
           D +   A IG 
Sbjct: 517 DVVAWNALIGG 527



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ L  +AK   L++G+QLH   +KLG  +   + N    +Y KC    ++ K+     
Sbjct: 658 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSV 717

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WN LIS +   G    V   F  ML   ++  H+TF SLL AC     ++ G  
Sbjct: 718 NRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLA 777

Query: 184 LHSFILKVGFGLNCFVSSAL--VDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYA 239
            +  I +  FGL   +   +  +DL G+ G + +A     ++  +  DLV  +++ SC  
Sbjct: 778 YYDMIAR-DFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKI 836

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
              L  G  A  NL +LE      +  SS
Sbjct: 837 HGNLDRGRKAAENLSKLEPEDDSVYVLSS 865



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           C D++  + I       +I    R VHA  +K  V+  +   N LIN Y+K G +  A  
Sbjct: 76  CFDQIGFSQI-------TIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARH 128

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH-GG 479
            F  +   + V+W +++      GL  E +E F KM    ++P S     +++AC   G 
Sbjct: 129 LFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGS 188

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           +  EG++     ++   +L D    T +  L G  GL+  +  +   MP
Sbjct: 189 MFREGVQVHGF-VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 236


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 321/604 (53%), Gaps = 37/604 (6%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           F  L QGKQLH+ ++ LGL     L +++++ Y       D + + +     + + WN L
Sbjct: 94  FKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLL 153

Query: 136 ISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           IS  +  G  V     ++ ML   +  D  T+ S+L+AC ++ D   G  +H  I     
Sbjct: 154 ISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSM 213

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + FV +ALV +YG+ G +E AR +FD +  RD V WN ++SCYA   +   A  +F  
Sbjct: 214 EWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGS 273

Query: 254 MRLEGMKGDYFTFSSL----------------------------------VNSCGTLGSS 279
           M+ EG++ +   ++++                                  +N+C  +G+ 
Sbjct: 274 MQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAI 333

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           KLG++IHG  ++  FD+   V  +L+ MY++  ++  A  +F     K +++WN M+ G+
Sbjct: 334 KLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGY 393

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAF 398
                  E   L R+MLQ    P+ VT+AS+L  C  ++     ++ H Y +K+   + +
Sbjct: 394 AHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEY 453

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L + NAL++ YS+ G +  A + F S+ + D VT+TS+I  Y   G  + ++++FE+M  
Sbjct: 454 LLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCK 513

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             ++PD +  + VL+ACSH GLV++G   F  MI  + I+P  EHY C+ DL GR GLL 
Sbjct: 514 LEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLN 573

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           +A + +  MP +P S      +GAC++HG+  + +WAA KLLE++P     Y L++N+YA
Sbjct: 574 KAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYA 633

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
           +   W  +A +R  MR+    K PGC+W+++  E   F+  D S+P A  +Y ++  +  
Sbjct: 634 AAGSWRKLAEVRTYMRNLGVRKAPGCAWVDVGSEFSPFLVGDSSNPHASEIYPLMDGLNE 693

Query: 639 LMEE 642
           LM++
Sbjct: 694 LMKD 697



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 175/395 (44%), Gaps = 34/395 (8%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           SLL AC     +  G++LH+ ++ +G   N  + S LV+ Y     + DA+ V +     
Sbjct: 86  SLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTL 145

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D + WN+++S Y  N     A+ V+  M  + ++ D +T+ S++ +CG       G ++H
Sbjct: 146 DPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVH 205

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +   S +  + V  +LV MY + G ++ A  +FD M  ++ VSWNT++  +   G  +
Sbjct: 206 RSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWK 265

Query: 347 EAVKLLRDM----------------------------------LQGSFCPDEVTLASILS 372
           EA +L   M                                  ++ S   D + +   L+
Sbjct: 266 EAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLN 325

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C  +      +++H +A++     F +++NALI  YS+C  +  A   F   +E  L+T
Sbjct: 326 ACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLIT 385

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +++  YA     +E   +F +ML   + P+ +    VL  C+    +  G  +   ++
Sbjct: 386 WNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIM 445

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
                      +  L D+  R G ++EA  +  S+
Sbjct: 446 KHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSL 480



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 203/438 (46%), Gaps = 41/438 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK   +      G ++H  I    +   L + N ++ +Y +    +    LFD M 
Sbjct: 185 YPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMP 244

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSL--------------- 168
            R+ V+WNT+IS   + G        F  M  + V ++ I +N++               
Sbjct: 245 RRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQ 304

Query: 169 -------------------LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
                              L AC     I++G+ +H   ++  F +   V +AL+ +Y +
Sbjct: 305 LISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSR 364

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           C  +  A  +F     + L+ WN M+S YA     +    +F  M  EGM+ +Y T +S+
Sbjct: 365 CRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASV 424

Query: 270 VNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +  C  + + + G++ H  ++K + F+  +L+  +LVDMY+++G + +A +VFD +T ++
Sbjct: 425 LPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRD 484

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            V++ +M++G+G  G+G   +KL  +M +    PD VT+ ++L++C    +  + + +  
Sbjct: 485 EVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFK 544

Query: 389 YAIK-NGVQAFLSIENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLS 446
             I  +G+   L     + + + + G +  A +   G   +P    W +++GA   HG +
Sbjct: 545 RMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNT 604

Query: 447 KESIEVFEKMLSHAVRPD 464
           +       K+L   ++PD
Sbjct: 605 EMGEWAAGKLLE--MKPD 620



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 7/165 (4%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + S+L +C       + +Q+HA  I  G+     + + L+N Y+    +  A     S  
Sbjct: 84  IGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSN 143

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL- 485
             D + W  +I AY  +G   E++ V++ ML+  + PD   +  VL AC      + GL 
Sbjct: 144 TLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLE 203

Query: 486 --RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             R       ++ +      +  L  + GR G L  A  L  +MP
Sbjct: 204 VHRSIEASSMEWSLFV----HNALVSMYGRFGKLEIARHLFDNMP 244


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 315/559 (56%), Gaps = 9/559 (1%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN 157
           L   ++  Y +    ++   LFDEM  R++V W  +I+G  +   N   +  F  M    
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQG 106

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF-VEDA 216
              +  T +S+L++C     +  G  +H  ++K+G   + +V +AL+++Y  C   +E A
Sbjct: 107 RSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAA 166

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F ++  ++ V W  +++ +     G G + ++  M LE      +  +  V +  ++
Sbjct: 167 FLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASI 226

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            S   G+QIH  V+K+ F  ++ V  S++D Y + G + +A R F  M  K++++WNT++
Sbjct: 227 DSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLI 286

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
               +  D  EA+ + +      F P+  T  S++++C +++     +Q+H    + G  
Sbjct: 287 SEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFN 345

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEK 455
             + + NALI+ Y+KCG I  + + FG ++E  +LV+WTS++  Y  HG   E++E+F+K
Sbjct: 346 KNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDK 405

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M+S  +RPD I F+ VLSAC H GLV +GL+YFN+M S+Y I PD + Y C+ DLLGR G
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL-AKWAAEKLLELEPSKPVNYALVS 574
            + EAY+L+  MP +P   T GA +GACK H   GL ++ AA+K++EL+P     Y ++S
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMVGTYVMLS 525

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLC 634
            +YA+E  W + AR+RKMMR   + K  G SWIE+  ++ +F  SD+  P A  +Y++L 
Sbjct: 526 YIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQVFSFAVSDKMCPNASSVYSVLG 585

Query: 635 TVFGLMEENNVSGHCNVLD 653
               L+EE   +G+   LD
Sbjct: 586 L---LIEETKEAGYVPDLD 601



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 3/262 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A++ SA    +  GKQ+H+ ++K G  + L + N +L  Y +C    + ++ F EM  ++
Sbjct: 219 AVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKD 278

Query: 129 IVTWNTLISGIINC-GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++TWNTLIS +           F+R        +  TF SL+ AC     +  G++LH  
Sbjct: 279 LITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGR 338

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDG 246
           I + GF  N  +++AL+D+Y KCG + D+ RVF E+   R+LV W  M+  Y  +  G  
Sbjct: 339 IYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAE 398

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLV 305
           A+ +F+ M   G++ D   F +++++C   G  + G +   ++  +   + D  +   +V
Sbjct: 399 AVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVV 458

Query: 306 DMYAKNGNIDDACRVFDGMTAK 327
           D+  + G I +A  + + M  K
Sbjct: 459 DLLGRAGKIGEAYELVERMPFK 480



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           ++AT+L+  Y + G +++A  +FD M  ++VV+W  M+ G+  +     A +   +M + 
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQ 105

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG-SIAG 417
              P+E TL+S+L SC ++ +      VH   +K G++  L ++NAL+N Y+ C  ++  
Sbjct: 106 GRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEA 165

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           A   F  +K  + VTWT++I  +   G     ++++++ML
Sbjct: 166 AFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQML 205



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  +   A    L  G+QLH  I + G    + L N ++ +Y KC    D E++F E+ 
Sbjct: 316 FTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIE 375

Query: 126 V-RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             RN+V+W +++ G  +   G      F +M+   +R D I F ++L AC  A  +E G 
Sbjct: 376 ERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGL 435

Query: 183 RLHSFILKVGFGLNC--FVSSALVDLYGKCGFVEDARRVFDEV 223
           +  + +++  +G+N    + + +VDL G+ G + +A  + + +
Sbjct: 436 KYFN-VMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERM 477


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 321/588 (54%), Gaps = 22/588 (3%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           + Y   L    + G L   + +H H+ K G    + +   +++ Y++C A  D  +LFD 
Sbjct: 79  AMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDG 138

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           M  RN+VTW  L++G      N  P      F  ML       H T  + L AC+ + D+
Sbjct: 139 MPERNVVTWTALVTGYTL---NSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDV 195

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           ++G+++H + +K G      + ++L  LY K G ++ A R F  +  ++++ W  M+S  
Sbjct: 196 DLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISAC 255

Query: 239 ALN--CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           A +  C+  G +++F  M ++G+  + FT +S+++ CGT     LG+Q+     K   + 
Sbjct: 256 AEDEECVELG-MSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCET 314

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----------G 345
           ++ V  S + +Y + G  D+A R+F+ M   ++++WN M+ G+ Q  D           G
Sbjct: 315 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRG 374

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            +A+ + RD+ +    PD  T +SILS C ++    +  Q+HA  IK+G  + + + +AL
Sbjct: 375 FQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 434

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +N Y+KCG I  A + F  +     VTWTS+I  Y+ HG  +E+I++FE+M    VRP+ 
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I F+ +LSACS+ GLV E   YF++M  +Y I P  +HY C+ D+  R+G + +A+  + 
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIK 554

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
               EP      + +  C+ HG++ LA +AA+KLLEL+P     Y L+ N+Y S   W D
Sbjct: 555 RTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQD 614

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           VAR+RK+M+      +   SWI I  +++ F ++DR+HPQA  +Y +L
Sbjct: 615 VARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLL 662



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 186/388 (47%), Gaps = 13/388 (3%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML +   +    +  LL  CV+   +   R +H  + K G   + FV+++LV+ Y +C  
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
             DARR+FD +  R++V W  +V+ Y LN      + VF  M   G    ++T  + +N+
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C       LG+Q+HG  IK   +    +  SL  +YAK G++D A R F  +  KNV++W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 333 NTMVVGFGQNGDGRE-AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
            TM+    ++ +  E  + L  DML     P+E TL S++S CG+       +QV A++ 
Sbjct: 249 TTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSF 308

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA---------F 442
           K G +  L ++N+ +  Y + G    A++ F  +++  ++TW ++I  YA          
Sbjct: 309 KIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368

Query: 443 HGLSK--ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
              S+  +++ +F  +    ++PD   F  +LS CS    + +G +     I     L D
Sbjct: 369 QARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSD 427

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               + L ++  + G + +A      MP
Sbjct: 428 VVVNSALVNMYNKCGCIQDANKAFLEMP 455


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 312/579 (53%), Gaps = 3/579 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +K     G    G+ +H+ ++K G    + + + ++ +Y K   F+D  ++FDEM 
Sbjct: 109 YPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMP 168

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WNT+IS     G        F RM   +   + ++    + AC +   +E G+ 
Sbjct: 169 ERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKE 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   LK  F L+ +V+SALVD+YG+C F+E AR VF ++  + LV WN M+  Y     
Sbjct: 229 IHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGD 288

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               + + N M +EG +    T +S++ +C    +   G+ +HG VI+   D D+ +  S
Sbjct: 289 SKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCS 348

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K G +  A  VF       V SWN M+ G+   G+  +AV +   M+     PD
Sbjct: 349 LIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPD 408

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VT  S+LS+C  L+   + +Q+H    ++ ++    + +AL++ YSKCG++  A + F 
Sbjct: 409 IVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFN 468

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S+ + D+V+WT +I AY  HG  +E++  F++M    V+PD + FL VLSAC H GL+ E
Sbjct: 469 SIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDE 528

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-IEPRSDTLGAFIGA 542
           G++YF+ M S Y I    E Y+CL D+LGR G L+EAY +L   P     ++ L     A
Sbjct: 529 GVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCA 588

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C +H    L    A+ L+E  P     Y ++ N+YAS   W    R+R  M++    K P
Sbjct: 589 CCLHRDHLLGYTIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKP 648

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           GCSWIE+  ++  F + DRSHPQA ++Y  L  + G ME
Sbjct: 649 GCSWIEMNEKVCHFFAEDRSHPQAENVYECLALLSGHME 687



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 240/454 (52%), Gaps = 5/454 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLIS 137
           L+Q K +H  I+ +GL + + L   +++VY  CK       +F+ + +R ++  WN+L+S
Sbjct: 19  LRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRSDVYIWNSLVS 78

Query: 138 GIINCG--GNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G        +    F+R+L   + + D  T+ ++++A        +GR +H+ ++K G  
Sbjct: 79  GYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHV 138

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +  V+S+LV +Y K    ED+ +VFDE+  RD+  WN ++S +      + A+ +F  M
Sbjct: 139 CDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRM 198

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
                + +  + +  +++C  L   + G++IH   +K+ F+LD  V ++LVDMY +   +
Sbjct: 199 ERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFL 258

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A  VF  M  K++V+WN+M+ G+   GD +  V+LL  M+     P + TL SIL +C
Sbjct: 259 EMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMAC 318

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
                    + VH Y I++ V A + I  +LI+ Y KCG +  A   F   ++  + +W 
Sbjct: 319 SRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWN 378

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            +I  Y   G   ++++V+++M+S  V+PD + F  VLS CS    + +G +  +L IS+
Sbjct: 379 VMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKG-KQIHLSISE 437

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             +  D    + L D+  + G + EA  +  S+P
Sbjct: 438 SRLETDELLLSALLDMYSKCGNVKEASRIFNSIP 471



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 166/323 (51%), Gaps = 8/323 (2%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           SLLR C     +   + +H  IL VG   +  +  +L+++Y  C     AR VF+ +  R
Sbjct: 8   SLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIR 67

Query: 227 -DLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            D+ +WN +VS Y+ N +    + VF  L+       D FT+ +++ + G LG   LGR 
Sbjct: 68  SDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRM 127

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH +V+K     DV+VA+SLV MYAK    +D+ +VFD M  ++V SWNT++  F Q GD
Sbjct: 128 IHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGD 187

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             +A++L   M +  F P+ V++   +S+C  L      +++H   +K   +    + +A
Sbjct: 188 AEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSA 247

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y +C  +  A + F  ++   LV W S+I  Y   G SK  +E+  +M+    RP 
Sbjct: 248 LVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPS 307

Query: 465 SIAFLEVLSACS------HGGLV 481
                 +L ACS      HG  V
Sbjct: 308 QTTLTSILMACSRSRNLLHGKFV 330



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 135/266 (50%), Gaps = 3/266 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E T  + +  +  L   ++   L  GK +H ++++  +   + +   ++ +Y KC   
Sbjct: 300 IIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEV 359

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
              E +F + +   + +WN +ISG ++ G        + +M+   V+ D +TF S+L  C
Sbjct: 360 KLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTC 419

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            Q   +E G+++H  I +     +  + SAL+D+Y KCG V++A R+F+ +  +D+V W 
Sbjct: 420 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWT 479

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIK 291
           VM+S Y  +     A+  F+ M+  G+K D  TF +++++CG  G    G +    +  K
Sbjct: 480 VMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSK 539

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDA 317
              +  +   + L+D+  + G + +A
Sbjct: 540 YGIEASIEQYSCLIDILGRAGRLLEA 565



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 5/165 (3%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S+L  C +     + + VH   +  G+++ + +  +LIN Y  C     A   F ++ 
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENID 65

Query: 427 -EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPDSIAFLEVLSACSHGGLVSEG 484
              D+  W S++  Y+ + +  ++++VF+++L+  +  PDS  +  V+ A  +G L  E 
Sbjct: 66  IRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKA--YGALGREF 123

Query: 485 L-RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           L R  + ++     + D    + L  +  +  L  ++  +   MP
Sbjct: 124 LGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMP 168


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 320/588 (54%), Gaps = 7/588 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H  ++K+G  + + + N +L +Y       +   +F +M  +++++WN+L++  +N
Sbjct: 280 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 339

Query: 142 CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G ++        M+     ++++TF S L AC   D  E GR LH  ++  G   N  +
Sbjct: 340 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 399

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV +YGK G + ++RRV  ++  RD+V WN ++  YA +   D A+A F  MR+EG+
Sbjct: 400 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 459

Query: 260 KGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
             +Y T  S++++C   G   + G+ +H  ++   F+ D  V  SL+ MYAK G++  + 
Sbjct: 460 SSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQ 519

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+G+  +N+++WN M+     +G G E +KL+  M       D+ + +  LS+   L+
Sbjct: 520 DLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLA 579

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  E +Q+H  A+K G +    I NA  + YSKCG I   ++         L +W  +I 
Sbjct: 580 VLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILIS 639

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A   HG  +E    F +ML   ++P  + F+ +L+ACSHGGLV +GL Y++++  D+ + 
Sbjct: 640 ALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLE 699

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EH  C+ DLLGR G L EA   ++ MP++P      + + +CK+HG++   + AAE 
Sbjct: 700 PAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAEN 759

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L +LEP     Y L SN++A+   W DV  +RK M      K   CSW+++  ++ +F  
Sbjct: 760 LSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGI 819

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            DR+HPQ + +YA L  +  L++E+    + S      D+E  E  LW
Sbjct: 820 GDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLW 867



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 224/452 (49%), Gaps = 31/452 (6%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHIT 164
           +Y K         LFD M VRN V+WNT++SGI+  G  +    +FR+M    ++     
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 165 FNSLLRACVQADDI-EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
             SL+ AC ++  +   G ++H F+ K G   + +VS+A++ LYG  G V  +R+VF+E+
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R++V W  ++  Y+     +  I ++  MR EG+  +  + S +++SCG L    LGR
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QI G V+K   +  + V  SL+ M    GN+D A  +FD M+ ++ +SWN++   + QNG
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              E+ ++   M +     +  T++++LS  G +      R +H   +K G  + + + N
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            L+  Y+  G    A   F  +   DL++W S++ ++   G S +++ +   M+S     
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV 360

Query: 464 DSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           + + F   L+AC            HG +V  GL ++N +I +            L  + G
Sbjct: 361 NYVTFTSALAACFTPDFFEKGRILHGLVVVSGL-FYNQIIGN-----------ALVSMYG 408

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLG--AFIGA 542
           ++G + E+  +L  M   PR D +   A IG 
Sbjct: 409 KIGEMSESRRVLLQM---PRRDVVAWNALIGG 437



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 220/449 (48%), Gaps = 2/449 (0%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
             ++G Q+H  + K GL + + +   +LH+Y          K+F+EM  RN+V+W +L+ 
Sbjct: 74  MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMV 133

Query: 138 GIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G  + G    V   ++ M  + V  +  + + ++ +C    D  +GR++   ++K G   
Sbjct: 134 GYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLES 193

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
              V ++L+ + G  G V+ A  +FD++  RD + WN + + YA N   + +  +F+LMR
Sbjct: 194 KLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMR 253

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
               + +  T S+L++  G +   K GR IHGLV+K  FD  V V  +L+ MYA  G   
Sbjct: 254 RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSV 313

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A  VF  M  K+++SWN+++  F  +G   +A+ LL  M+      + VT  S L++C 
Sbjct: 314 EANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACF 373

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +     + R +H   + +G+     I NAL++ Y K G ++ + +    +   D+V W +
Sbjct: 374 TPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNA 433

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +IG YA      +++  F+ M    V  + I  + VLSAC   G + E  +  +  I   
Sbjct: 434 LIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA 493

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
               D      L  +  + G L  + DL 
Sbjct: 494 GFESDEHVKNSLITMYAKCGDLSSSQDLF 522



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ L  +AK   L++G+QLH   +KLG  +   + N    +Y KC    ++ K+     
Sbjct: 568 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSV 627

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WN LIS +   G    V   F  ML   ++  H+TF SLL AC     ++ G  
Sbjct: 628 NRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLA 687

Query: 184 LHSFILKVGFGLNCFVSSAL--VDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYA 239
            +  I +  FGL   +   +  +DL G+ G + +A     ++  +  DLV  +++ SC  
Sbjct: 688 YYDMIAR-DFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKI 746

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
              L  G  A  NL +LE      +  SS
Sbjct: 747 HGNLDRGRKAAENLSKLEPEDDSVYVLSS 775


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 294/524 (56%), Gaps = 31/524 (5%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA-------- 216
           F+ LL++C+  + + +G++LHS I+  G   + F+S+ L++LY KCG ++ A        
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 217 -----------------------RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                                  R++FDE+  R++  WN MV+        +  + +F+ 
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G   D F   S++  C  L +   GRQ+HG V K  F+ +++V +SL  MY K G+
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           + +  R+   M ++NVV+WNT++ G  QNG   E +     M    F PD++T  S++SS
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISS 294

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C  L+   + +Q+HA  IK G    +S+ ++LI+ YS+CG +  +L+ F   +  D+V W
Sbjct: 295 CSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCW 354

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           +S+I AY FHG   E+I++F +M    +  + + FL +L ACSH GL  +G+++F+LM+ 
Sbjct: 355 SSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVE 414

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            Y + P  EHYTC+ DLLGR G + EA  L+ SMP++    T    + ACK+H    +A+
Sbjct: 415 KYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMAR 474

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             +E++  L+P  PV Y L+SN++AS++ W DV+ +RK MRD    K PG SW+E+  +I
Sbjct: 475 RISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQI 534

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
           H F   D+SHP++V + + L  +   M++       + +  +MD
Sbjct: 535 HQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMD 578



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 35/432 (8%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM--- 117
           S  S +S  L+       L  GKQLHS I+  G  +   + N +L++Y KC   D     
Sbjct: 50  SEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITL 109

Query: 118 ----------------------------EKLFDEMRVRNIVTWNTLISGIINCGGNVTPY 149
                                        K+FDEM  RN+ TWN +++G+I    N    
Sbjct: 110 FGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGL 169

Query: 150 --FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
             F RM       D     S+LR C     +  GR++H ++ K GF  N  V S+L  +Y
Sbjct: 170 GLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMY 229

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
            KCG + +  R+   +  +++V WN +++  A N   +  +  +N+M++ G + D  TF 
Sbjct: 230 MKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFV 289

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S+++SC  L +   G+QIH  VIK    L V V +SL+ MY++ G ++ + +VF      
Sbjct: 290 SVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENG 349

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           +VV W++M+  +G +G G EA+ L   M Q     ++VT  S+L +C    +  +  +  
Sbjct: 350 DVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFF 409

Query: 388 AYAI-KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGL 445
              + K GV+  L     +++   + GS+  A     S+  + D++TW +++ A   H  
Sbjct: 410 DLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKK 469

Query: 446 SKESIEVFEKML 457
           ++ +  + E++ 
Sbjct: 470 TEMARRISEEVF 481


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 317/575 (55%), Gaps = 14/575 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            +Q H+ I+  G      L  +++  Y  C        +F+ +  +++  WN+LI+G + 
Sbjct: 47  AQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYVK 106

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                     FR M  + +  D  T  ++ +   + +D+  G+ +H   +++GF  +  V
Sbjct: 107 NHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVVV 166

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYAL-NC---LGDGAIAVFNLM 254
            ++L+ +Y +CG   DA +VFDE   R++  +NV++S C AL NC     D     F  M
Sbjct: 167 GNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRM 226

Query: 255 RLEGMKGDYFTFSSLVN-SCGTLGSSKLGRQIHGLVIKQSFDL----DVLVATSLVDMYA 309
           + EG K D FT +SL+   CG  G    GR++H  V+K   DL    DV + +SL+DMY+
Sbjct: 227 QCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYS 286

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTLA 368
           ++  +    RVFD M  +NV  W  M+ G+ QNG   +A+ LLR M ++    P++V+L 
Sbjct: 287 RSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLI 346

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GSVKE 427
           S L +CG L+     +Q+H ++IK  +   +S+ NALI+ YSKCGS+  A + F  S   
Sbjct: 347 SALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYF 406

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D +TW+S+I AY  HG  +E+I  + KML    +PD I  + VLSACS  GLV EG+  
Sbjct: 407 KDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEGISI 466

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +  +++ Y I P  E   C+ D+LGR G L +A + +  MP++P     G+ + A  +HG
Sbjct: 467 YKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLTASVIHG 526

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +      A   LLELEP  P NY  +SN YAS+R W  V  +R +M++    KVPGCSWI
Sbjct: 527 NSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLKKVPGCSWI 586

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            I+G+ H+F  +D++HP +  +Y ML  +  +M +
Sbjct: 587 TISGKTHSFSVADKAHPSSSLIYEMLGDLVSIMTD 621



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 210/407 (51%), Gaps = 16/407 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +   KV  +   L  GK +H   +++G  + + + N ++ +Y +C  F D  K+FDE   
Sbjct: 133 ATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPH 192

Query: 127 RNIVTWNTLISG---IINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACV-QADDI 178
           RN+ ++N +ISG   + NC      +++ +F RM  +  + D  T  SLL  C       
Sbjct: 193 RNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKW 252

Query: 179 EVGRRLHSFILKVGFGL----NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           + GR LH +++K G  L    +  + S+L+D+Y +   V   RRVFD++  R++ +W  M
Sbjct: 253 DYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAM 312

Query: 235 VSCYALNCLGDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           ++ Y  N   D A+ +   M++ +G++ +  +  S + +CG L     G+QIHG  IK  
Sbjct: 313 INGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKME 372

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLL 352
            + DV +  +L+DMY+K G++D A R F+  +  K+ ++W++M+  +G +G G EA+   
Sbjct: 373 LNDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAY 432

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH-AYAIKNGVQAFLSIENALINAYSK 411
             MLQ  F PD +T+  +LS+C    +  E   ++ +   K  ++  + I   +++   +
Sbjct: 433 YKMLQQGFKPDMITVVGVLSACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGR 492

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            G +  AL+    +  +P    W S++ A   HG S+     +  +L
Sbjct: 493 SGQLDQALEFIKEMPLDPGPSVWGSLLTASVIHGNSRTRDLAYRHLL 539



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 160/322 (49%), Gaps = 17/322 (5%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL+ C+     ++ ++ H+ IL  GF  N F+++ LV  Y  CG +  +R VF+ V  + 
Sbjct: 34  LLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKS 93

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           + LWN +++ Y  N     A+A+F  M   GM  D +T +++    G L     G+ IHG
Sbjct: 94  VYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHG 153

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG--------F 339
             I+  F  DV+V  SL+ MY + G   DA +VFD    +NV S+N ++ G        F
Sbjct: 154 KGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNF 213

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILS-SCGSLSISCETRQVHAYAIKNGVQAF 398
             + D       LR   +G F  D  T+AS+L   CG        R++H Y +KNG+   
Sbjct: 214 TSHDDLSNF--FLRMQCEG-FKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLK 270

Query: 399 LS----IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +     + ++LI+ YS+   +    + F  +K  ++  WT++I  Y  +G   +++ +  
Sbjct: 271 MDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLR 330

Query: 455 KM-LSHAVRPDSIAFLEVLSAC 475
            M +   +RP+ ++ +  L AC
Sbjct: 331 AMQMKDGIRPNKVSLISALPAC 352



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%)

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           +L  +L  C  L      +Q HA  + NG      +   L++AY+ CG +A +   F SV
Sbjct: 30  SLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESV 89

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           +   +  W S+I  Y  +   ++++ +F +M  + + PD      V 
Sbjct: 90  EAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVF 136


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 308/569 (54%), Gaps = 2/569 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  LK  A    L+QG+ +HS I+K G      +   ++ +Y KC    D   +F  ++ 
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +IV W+ LI+ +   G +      F  M L +   +  T  SLL A     +++ G+ +
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ + K GF  +  VS+ALV +Y K G V D  ++++ ++ RDL+ WN  +S      + 
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMY 497

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D  + +F  M  EG   + +TF S++ SC  L     GRQ+H  +IK   D +  V T+L
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTAL 557

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK   ++DA   F+ ++ +++ +W  ++  + Q   G +A+   R M Q    P+E
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            TLA  LS C SL+     +Q+H+   K+G  + + + +AL++ Y+KCG +  A   F +
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEA 677

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D + W +II  YA +G   +++  F  ML   + PD + F  +LSACSH GLV EG
Sbjct: 678 LIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEG 737

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             +FN M  D+ I P  +H  C+ D+LGRVG   E  D +  M +   +      +GA K
Sbjct: 738 KEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASK 797

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H ++ L + AA KL EL+P +  +Y L+SN++A+E  W DV R+R +M      K PGC
Sbjct: 798 MHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGC 857

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SW+E  G++HTFVS D SHPQ   ++  L
Sbjct: 858 SWVEANGQVHTFVSHDYSHPQIQEIHLKL 886



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 235/461 (50%), Gaps = 6/461 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H+   KLGL   L + + ++ +Y KC   +   K+F  M  +N VTWN L++G
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G    V   F  M+  +V+ +  T  ++L+ C  + +++ G+ +HS I+K G+  N
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN 348

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F+   LVD+Y KCG   DA  VF  +   D+V+W+ +++C       + +I +F+LMRL
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
                + +T  SL+++    G+ + G+ IH  V K  F+ DV V+ +LV MY KNG + D
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD 468

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             ++++ M  ++++SWN  + G    G     + +   ML+  F P+  T  SIL SC  
Sbjct: 469 GTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC 528

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      RQVHA+ IKN +     +  ALI+ Y+KC  +  A   F  +   DL TWT I
Sbjct: 529 LFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVI 588

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA     ++++  F +M    V+P+       LS CS    +  G +  +++    H
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH 648

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
           +  D    + L D+  + G + EA  L  ++    R DT+ 
Sbjct: 649 V-SDMFVGSALVDMYAKCGCMEEAEALFEAL---IRRDTIA 685



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 214/421 (50%), Gaps = 2/421 (0%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S+     +YS  L+  A    L   K +H  I+K  +     L   +++VY KC+     
Sbjct: 107 SSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYA 166

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCG-GNVTPY-FRRMLLDNVRLDHITFNSLLRACVQA 175
             +  +M  R++V+W  LI G++  G  N + Y F+ M  + +  +  T  + L+AC   
Sbjct: 167 RLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLC 226

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
             +++G+++H+   K+G  L+ FV SALVDLY KCG +E A ++F  +  ++ V WNV++
Sbjct: 227 MALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLL 286

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + YA      G + +F  M    +K + FT ++++  C    + K G+ IH L+IK  ++
Sbjct: 287 NGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE 346

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            +  +   LVDMY+K G   DA  VF  +   ++V W+ ++    Q G   E++KL   M
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
             G   P++ T+ S+LS+  +       + +HA   K G +  +++ NAL+  Y K G +
Sbjct: 407 RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCV 466

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
               + + S+ + DL++W + +      G+    + +F  ML     P+   F+ +L +C
Sbjct: 467 HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526

Query: 476 S 476
           S
Sbjct: 527 S 527



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 169/320 (52%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++S+LR C     + V + +H  I+K     +  +  +LV++Y KC +   AR V  ++ 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+V W  ++         + +I +F  M+ EG+  + FT ++ + +C    +  LG+Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H    K    LD+ V ++LVD+YAK G I+ A ++F GM  +N V+WN ++ G+ Q GD
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
               +KL   M++     +E TL ++L  C +     + + +H+  IK G +    I   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ YSKCG    A+  F ++K+PD+V W+++I      G S+ESI++F  M      P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 465 SIAFLEVLSACSHGGLVSEG 484
                 +LSA ++ G +  G
Sbjct: 415 QYTICSLLSAATNTGNLQYG 434


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 285/504 (56%), Gaps = 9/504 (1%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           + +ML    R +  TF   L++C       +G + H  I KVG     FV + L+ +Y K
Sbjct: 28  YPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCK 87

Query: 210 CGFVEDARRVFDEVL-CRDL-VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
              V++AR+VF+E    R L V +N +VS Y  N     A+ +F  M  EG+  +  T  
Sbjct: 88  GSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLL 147

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
            L+ +C +  + +LG  +H   +K  FD DV V    + MY K G+++ A ++FD M  K
Sbjct: 148 GLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 207

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
            ++SWN MV G+ QNG     ++L R+M      PD VTL  +LSSC +L       +V 
Sbjct: 208 GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 267

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
                +G  +   + NALIN Y++CG++  A   F  + E  LV+WT+IIG Y  HG  +
Sbjct: 268 FKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGE 327

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
            ++++F++M+   + PD  AF+ VLSACSH GL  +GL YF +M  +Y + P  EHY+C+
Sbjct: 328 IAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCM 387

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            DLLGR G L EA  L+ SMPI+P     GA +GACK+H ++ LA+ A E+++ELEP   
Sbjct: 388 VDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENI 447

Query: 568 VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
             Y L+SN+Y++      V R+R MM++    K PGCS++E+ G +H F+  DR+H Q+ 
Sbjct: 448 GYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSD 507

Query: 628 HMY-------AMLCTVFGLMEENN 644
            +Y       A++   FG  E++N
Sbjct: 508 EIYRVLEELEAIIMQEFGKPEKDN 531



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 227/457 (49%), Gaps = 20/457 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE-MRVR 127
           ALK  A       G Q H  I K+G   +  +Q  ++ +Y K    D+  K+F+E    R
Sbjct: 46  ALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSR 105

Query: 128 NI-VTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            + V +N L+SG ++   C   V   FR+M  + V ++ +T   L+ ACV   ++E+G  
Sbjct: 106 KLTVCYNALVSGYVSNSKCSDAVL-LFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSS 164

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH   LK GF  +  V +  + +Y KCG V  A+++FDE+  + L+ WN MVS YA N L
Sbjct: 165 LHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGL 224

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               + ++  M + G+  D  T   +++SC  LG+  +G ++   +    F  +  +  +
Sbjct: 225 ATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNA 284

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MYA+ GN+  A  VFDGM  + +VSW  ++ G+G +G G  AV+L ++M++    PD
Sbjct: 285 LINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPD 344

Query: 364 EVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
                 +LS+C    ++ +  +        Y ++ G + +    + +++   + G +  A
Sbjct: 345 GTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY----SCMVDLLGRAGRLKEA 400

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
                S+  +PD   W +++GA   H   + +   FE+++   + P++I +  +LS    
Sbjct: 401 QTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLSNIYS 458

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
               S+G+    +M+ +  +  D        +L GRV
Sbjct: 459 NANNSKGVLRIRIMMKEKKLKKDPG--CSYVELKGRV 493



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 153/321 (47%), Gaps = 8/321 (2%)

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN  +   A  C    A++++  M   G + + FTF   + SC  L    LG Q HG + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREA 348
           K     +  V T L+ MY K   +D+A +VF+    + K  V +N +V G+  N    +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALIN 407
           V L R M +     + VTL  ++ +C S  I+ E    +H   +K G  + +S+ N  I 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVS-PINLELGSSLHCSTLKYGFDSDVSVVNCFIT 186

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y KCGS+  A + F  +    L++W +++  YA +GL+   +E++  M  + V PD + 
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 246

Query: 468 FLEVLSACSHGGLVSEGLRY-FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            + VLS+C++ G  S G    F +  S +   P   +   L ++  R G L +A  +   
Sbjct: 247 LVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDG 304

Query: 527 MPIEPRSDTLGAFIGACKVHG 547
           MP E    +  A IG   +HG
Sbjct: 305 MP-ERTLVSWTAIIGGYGMHG 324


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 320/588 (54%), Gaps = 7/588 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H  ++K+G  + + + N +L +Y       +   +F +M  +++++WN+L++  +N
Sbjct: 263 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 322

Query: 142 CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G ++        M+     ++++TF S L AC   D  E GR LH  ++  G   N  +
Sbjct: 323 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 382

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV +YGK G + ++RRV  ++  RD+V WN ++  YA +   D A+A F  MR+EG+
Sbjct: 383 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 442

Query: 260 KGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
             +Y T  S++++C   G   + G+ +H  ++   F+ D  V  SL+ MYAK G++  + 
Sbjct: 443 SSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQ 502

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+G+  +N+++WN M+     +G G E +KL+  M       D+ + +  LS+   L+
Sbjct: 503 DLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLA 562

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  E +Q+H  A+K G +    I NA  + YSKCG I   ++         L +W  +I 
Sbjct: 563 VLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILIS 622

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A   HG  +E    F +ML   ++P  + F+ +L+ACSHGGLV +GL Y++++  D+ + 
Sbjct: 623 ALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLE 682

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EH  C+ DLLGR G L EA   ++ MP++P      + + +CK+HG++   + AAE 
Sbjct: 683 PAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAEN 742

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L +LEP     Y L SN++A+   W DV  +RK M      K   CSW+++  ++ +F  
Sbjct: 743 LSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGI 802

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            DR+HPQ + +YA L  +  L++E+    + S      D+E  E  LW
Sbjct: 803 GDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLW 850



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 218/435 (50%), Gaps = 31/435 (7%)

Query: 124 MRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDI-EV 180
           M VRN V+WNT++SGI+  G  +    +FR+M    ++       SL+ AC ++  +   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H F+ K G   + +VS+A++ LYG  G V  +R+VF+E+  R++V W  ++  Y+ 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
               +  I ++  MR EG+  +  + S +++SCG L    LGRQI G V+K   +  + V
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             SL+ M    GN+D A  +FD M+ ++ +SWN++   + QNG   E+ ++   M +   
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             +  T++++LS  G +      R +H   +K G  + + + N L+  Y+  G    A  
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS---- 476
            F  +   DL++W S++ ++   G S +++ +   M+S     + + F   L+AC     
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360

Query: 477 -------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
                  HG +V  GL ++N +I +            L  + G++G + E+  +L  M  
Sbjct: 361 FEKGRILHGLVVVSGL-FYNQIIGN-----------ALVSMYGKIGEMSESRRVLLQM-- 406

Query: 530 EPRSDTLG--AFIGA 542
            PR D +   A IG 
Sbjct: 407 -PRRDVVAWNALIGG 420



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 220/448 (49%), Gaps = 2/448 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            ++G Q+H  + K GL + + +   +LH+Y          K+F+EM  RN+V+W +L+ G
Sbjct: 58  FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVG 117

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G    V   ++ M  + V  +  + + ++ +C    D  +GR++   ++K G    
Sbjct: 118 YSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESK 177

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++L+ + G  G V+ A  +FD++  RD + WN + + YA N   + +  +F+LMR 
Sbjct: 178 LAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRR 237

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
              + +  T S+L++  G +   K GR IHGLV+K  FD  V V  +L+ MYA  G   +
Sbjct: 238 FHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE 297

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  K+++SWN+++  F  +G   +A+ LL  M+      + VT  S L++C +
Sbjct: 298 ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFT 357

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                + R +H   + +G+     I NAL++ Y K G ++ + +    +   D+V W ++
Sbjct: 358 PDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNAL 417

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG YA      +++  F+ M    V  + I  + VLSAC   G + E  +  +  I    
Sbjct: 418 IGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG 477

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
              D      L  +  + G L  + DL 
Sbjct: 478 FESDEHVKNSLITMYAKCGDLSSSQDLF 505



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ L  +AK   L++G+QLH   +KLG  +   + N    +Y KC    ++ K+     
Sbjct: 551 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSV 610

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WN LIS +   G    V   F  ML   ++  H+TF SLL AC     ++ G  
Sbjct: 611 NRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLA 670

Query: 184 LHSFILKVGFGLNCFVSSAL--VDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYA 239
            +  I +  FGL   +   +  +DL G+ G + +A     ++  +  DLV  +++ SC  
Sbjct: 671 YYDMIAR-DFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKI 729

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
              L  G  A  NL +LE      +  SS
Sbjct: 730 HGNLDRGRKAAENLSKLEPEDDSVYVLSS 758


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/486 (37%), Positives = 285/486 (58%), Gaps = 3/486 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +H  + ++LR+CV +  +  GR+LH+ +L  G GL+  +++ LVDLY  CG V  ARR+F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 221 DEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGS 278
           DE+  + ++ LWNV++  YA +   + AI ++  M   G M+ D FT+  ++ +C  L  
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR++H  V++ S+  DV V   L+DMYAK G +D+A  VFD  T ++ V WN+M+  
Sbjct: 182 LGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAA 241

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            GQNG   EA+ L R+M      P  VTL S +S+          R++H Y  + G  + 
Sbjct: 242 CGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQ 301

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             ++ +L++ Y+K G +  A   F  +   +L++W ++I  +  HG +  + E+F +M +
Sbjct: 302 DKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRN 361

Query: 459 HA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
            A V PD I F+ VLSAC+HGG+V E    F+LM++ Y I P  +HYTCL D+LG  G  
Sbjct: 362 EAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRF 421

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA D++  M ++P S   GA +  CK+H ++ LA+ A  KL+ELEP    NY L+SN+Y
Sbjct: 422 KEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIY 481

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A    W + AR+RK+M +    K+  CSWIE+ G+ H F+  D SHP++  +Y  L  + 
Sbjct: 482 AQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLE 541

Query: 638 GLMEEN 643
           GL+ + 
Sbjct: 542 GLISQT 547



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 190/392 (48%), Gaps = 15/392 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H+ Y+  L+       ++ G+QLH+ ++  GL     L  +++ +Y  C       +LFD
Sbjct: 63  HNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFD 122

Query: 123 EMRVR-NIVTWNTLISGIINCGGN--VTPYFRRMLL-DNVRLDHITFNSLLRACVQADDI 178
           EM  + N+  WN LI      G        +R ML   ++  D+ T+  +L+AC    D+
Sbjct: 123 EMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDL 182

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             GR +H  +++  +  + FV + L+D+Y KCG V++A  VFD    RD V+WN M++  
Sbjct: 183 GAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAAC 242

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N     A+A+   M  EG+     T  S +++    G+   GR++HG   ++ F    
Sbjct: 243 GQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQD 302

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-Q 357
            + TSL+DMYAK+G +  A  +FD +  + ++SWN M+ GFG +G    A +L R M  +
Sbjct: 303 KLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNE 362

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVH-----AYAIKNGVQAFLSIENALINAYSKC 412
               PD +T   +LS+C    +  E ++V       Y+IK  VQ +      L++     
Sbjct: 363 AQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHY----TCLVDVLGHS 418

Query: 413 GSIAGALQCF-GSVKEPDLVTWTSIIGAYAFH 443
           G    A     G + +PD   W +++     H
Sbjct: 419 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIH 450


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 203/675 (30%), Positives = 339/675 (50%), Gaps = 70/675 (10%)

Query: 47   SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLH 106
             +L   G + +S       YS ALK   +   +  G ++H  ++K G    + L+  +++
Sbjct: 663  KELHGKGVVFDS-----EVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMN 717

Query: 107  VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV----TPYFRRMLLDNVRLDH 162
             Y +C   +   ++F EM     + WN  I  I+N            FR+M    ++ + 
Sbjct: 718  FYGRCWGLEKANQVFHEMPNPEALLWNEAI--ILNLQSEKLQKGVELFRKMQFSFLKAET 775

Query: 163  ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
             T   +L+AC +   +   +++H ++ + G   +  + + L+ +Y K G +E ARRVFD 
Sbjct: 776  ATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDS 835

Query: 223  VLCRDLVLWNVMVSCYA--------------------------LNCLGDG---------A 247
            +  R+   WN M+S YA                           NCL  G          
Sbjct: 836  MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 895

Query: 248  IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
            + +   M+ EG K +  + +S++ +   LG   +G++ HG V++  FD DV V TSL+DM
Sbjct: 896  LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955

Query: 308  YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM------------ 355
            Y KN ++  A  VFD M  +N+ +WN++V G+   G   +A++LL  M            
Sbjct: 956  YVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 1015

Query: 356  ------------LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
                         + +F P+  ++  +L +C SLS+  + +++H  +I+NG    + +  
Sbjct: 1016 NGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVAT 1075

Query: 404  ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            ALI+ YSK  S+  A + F  ++   L +W  +I  +A  GL KE+I VF +M    V P
Sbjct: 1076 ALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGP 1135

Query: 464  DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
            D+I F  +LSAC + GL+ EG +YF+ MI+DY I+P  EHY C+ DLLGR G L EA+DL
Sbjct: 1136 DAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDL 1195

Query: 524  LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
            + +MP++P +   GA +G+C++H ++  A+ AA+ L +LEP+   NY L+ N+Y+    W
Sbjct: 1196 IHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRW 1255

Query: 584  FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
             D+  LR++M           SWI+I   +H F S ++ HP A  +Y  L  +   M++ 
Sbjct: 1256 EDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKL 1315

Query: 644  NVSGHCNVLDKEMDE 658
                  N + + MDE
Sbjct: 1316 GYVPDVNCVYQNMDE 1330



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 197/435 (45%), Gaps = 50/435 (11%)

Query: 127  RNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN + WN+ +    +  G+   V   F+ +    V  D   ++  L+ C +  DI +G  
Sbjct: 636  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 184  LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            +H  ++K GF L+ ++  AL++ YG+C  +E A +VF E+   + +LWN  +     +  
Sbjct: 696  IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755

Query: 244  GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
                + +F  M+   +K +  T   ++ +CG +G+    +QIHG V +   D DV +   
Sbjct: 756  LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 815

Query: 304  LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ---------------------- 341
            L+ MY+KNG ++ A RVFD M  +N  SWN+M+  +                        
Sbjct: 816  LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 875

Query: 342  -------------NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
                         +G   E + +L+ M    F P+  ++ S+L +   L      ++ H 
Sbjct: 876  IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHG 935

Query: 389  YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
            Y ++NG    + +  +LI+ Y K  S+  A   F ++K  ++  W S++  Y+F G+ ++
Sbjct: 936  YVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFED 995

Query: 449  SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
            ++ +  +M    ++PD + +  ++S  +  G   +              +P+S   TCL 
Sbjct: 996  ALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAF------------MPNSASITCLL 1043

Query: 509  DLLGRVGLLVEAYDL 523
                 + LL +  ++
Sbjct: 1044 RACASLSLLQKGKEI 1058



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 6/318 (1%)

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA--VFNLMRLEGMK 260
           L+  Y   G    A  VF   L R+ + WN  V  +  +  G   I   VF  +  +G+ 
Sbjct: 613 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFK-SSAGSLHIVLEVFKELHGKGVV 671

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D   +S  + +C  +    LG +IHG +IK+ FDLDV +  +L++ Y +   ++ A +V
Sbjct: 672 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 731

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV-TLASILSSCGSLSI 379
           F  M     + WN  ++   Q+   ++ V+L R M Q SF   E  T+  +L +CG +  
Sbjct: 732 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQACGKMGA 790

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +Q+H Y  + G+ + +S+ N LI+ YSK G +  A + F S++  +  +W S+I +
Sbjct: 791 LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 850

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA  G   ++  +F ++ S  ++PD + +  +LS     G   E L     M  +    P
Sbjct: 851 YAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKP 909

Query: 500 DSEHYTCLTDLLGRVGLL 517
           +S   T +   +  +G L
Sbjct: 910 NSSSMTSVLQAISELGFL 927


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1028

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/574 (33%), Positives = 315/574 (54%), Gaps = 10/574 (1%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ G Q HS I+K  L   L + N ++ +Y KC A +D  ++F+ M  R+ V+WNT+I G
Sbjct: 444  LEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGG 503

Query: 139  IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             +        +  F RM    +  D     S L+AC     +  G+++H   +K G    
Sbjct: 504  YVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRV 563

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
                S+L+D+Y KCG +EDAR+VF  +    +V  N +++ Y+ N L + A+ +F  M  
Sbjct: 564  LHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNLEE-AVVLFQEMLT 622

Query: 257  EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLVATSLVDMYAKNGNID 315
            +G+     TF+++V +C    S  LG Q HG +IK  F  +   +  SL+ +Y  +  + 
Sbjct: 623  KGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMA 682

Query: 316  DACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            +AC +F  +++ K++V W  M+ G  QNG   EA+K  ++M      PD+ T  ++L  C
Sbjct: 683  EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVC 742

Query: 375  GSLSISCETRQVHA--YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLV 431
              LS   E R +H+  + + + +    S  N LI+ Y+KCG +  + Q F  ++   ++V
Sbjct: 743  SVLSSLREGRAIHSLIFHLAHDLDELTS--NTLIDMYAKCGDMKSSSQVFDEMRRRSNVV 800

Query: 432  TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            +W S+I  YA +G +++++++F+ M    + PD I FL VL+ACSH G VS+G + F +M
Sbjct: 801  SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 492  ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
            I  Y I    +H  C+ DLLGR G L EA D + +  ++P +    + +GAC++HG    
Sbjct: 861  IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMR 920

Query: 552  AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
             + AAE+L+ELEP     Y L+SN+YAS+  W +   LRK MRD    KVPG SWI++  
Sbjct: 921  GEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDVGQ 980

Query: 612  EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
              H F + D+SH     +   L  ++ LM+++ V
Sbjct: 981  RRHIFAAGDQSHSDIGKIEMFLEDLYDLMKDDAV 1014



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 213/391 (54%), Gaps = 3/391 (0%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLD 161
           V++ Y+      D   LF EM   ++V WN +ISG    G  +    YF  M   +V+  
Sbjct: 267 VINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKST 326

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             T  S+L A     ++++G  +H+  +K+G   N +V S+LV +Y KC  +E A +VF+
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  R+ VLWN M+  YA N      + +F  M+  G   D FTF+SL+++C      ++
Sbjct: 387 ALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEM 446

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G Q H ++IK+    ++ V  +LVDMYAK G ++DA ++F+ M  ++ VSWNT++ G+ Q
Sbjct: 447 GSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQ 506

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           + +  EA  L   M       D   LAS L +C ++    + +QVH  ++K G+   L  
Sbjct: 507 DENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHT 566

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            ++LI+ YSKCG I  A + F S+ E  +V+  ++I  Y+ + L +E++ +F++ML+  V
Sbjct: 567 GSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGV 625

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            P  I F  ++ AC     ++ G ++   +I
Sbjct: 626 NPSEITFATIVEACHKPESLTLGTQFHGQII 656



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 231/466 (49%), Gaps = 14/466 (3%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S  S  S     L        L  G  +H+  +KLGL + + + + ++ +Y KC+  +  
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAA 381

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            K+F+ +  RN V WN +I G  + G +  V   F  M      +D  TF SLL  C  +
Sbjct: 382 AKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVS 441

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D+E+G + HS I+K     N FV +ALVD+Y KCG +EDAR++F+ +  RD V WN ++
Sbjct: 442 HDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTII 501

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
             Y  +     A  +F  M   G+  D    +S + +C  +     G+Q+H L +K   D
Sbjct: 502 GGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLD 561

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
             +   +SL+DMY+K G I+DA +VF  M   +VVS N ++ G+ QN +  EAV L ++M
Sbjct: 562 RVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA---FLSIENALINAYSKC 412
           L     P E+T A+I+ +C          Q H   IK G  +   +L I  +L+  Y   
Sbjct: 621 LTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGI--SLLGLYMNS 678

Query: 413 GSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
             +A A   F  +  P  +V WT ++  ++ +G  +E+++ +++M      PD   F+ V
Sbjct: 679 RRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTV 738

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVG 515
           L  CS    + EG    +L+   +H+  D +  T   L D+  + G
Sbjct: 739 LRVCSVLSSLREGRAIHSLI---FHLAHDLDELTSNTLIDMYAKCG 781



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 220/468 (47%), Gaps = 44/468 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L  SA+   ++ G+Q+H  ++K+GL         ++ +Y KC    D +++FD + 
Sbjct: 163 FSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIV 222

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V W  L SG +  G        F RM  +  R DH+ F ++               
Sbjct: 223 DPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTV--------------- 267

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
                      +N ++S          G ++DAR +F E+   D+V WNVM+S +     
Sbjct: 268 -----------INTYIS---------LGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGC 307

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              AI  F  MR   +K    T  S++++ G + +  LG  +H   IK     ++ V +S
Sbjct: 308 EIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSS 367

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LV MY+K   ++ A +VF+ +  +N V WN M+ G+  NG+  + ++L  DM    +  D
Sbjct: 368 LVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNID 427

Query: 364 EVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           + T  S+LS+C ++S   E   Q H+  IK  +   L + NAL++ Y+KCG++  A Q F
Sbjct: 428 DFTFTSLLSTC-AVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIF 486

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS--HGGL 480
             + + D V+W +IIG Y       E+ ++F +M S  +  D       L AC+  HG  
Sbjct: 487 EHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLY 546

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             + +   ++      +L      + L D+  + G++ +A  + +SMP
Sbjct: 547 QGKQVHCLSVKCGLDRVLHTG---SSLIDMYSKCGIIEDARKVFSSMP 591



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 219/451 (48%), Gaps = 39/451 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +HS  + LG+ ++  L N ++ +Y KC      EK F+ +  +++  WN+++S 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSM 134

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G  G V   F  +  + +  +  TF+ +L    +  ++E GR++H  ++K+G   N
Sbjct: 135 YSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERN 194

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +   ALVD+Y KC  + DA+RVFD ++  + V W  + S Y    L + A+ VF  MR 
Sbjct: 195 SYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRG 254

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG + D+  F +++N+                                   Y   G + D
Sbjct: 255 EGHRPDHLAFVTVINT-----------------------------------YISLGKLKD 279

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F  M + +VV+WN M+ G G+ G    A++   +M + S      TL S+LS+ G 
Sbjct: 280 ARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           ++       VHA AIK G+ + + + ++L++ YSKC  +  A + F +++E + V W ++
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAM 399

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA +G S + +E+F  M S     D   F  +LS C+    +  G ++ +++I    
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKK-K 458

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           +  +      L D+  + G L +A  +   M
Sbjct: 459 LTKNLFVGNALVDMYAKCGALEDARQIFEHM 489



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 140/301 (46%), Gaps = 17/301 (5%)

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           ++G+ +H   +    D +  +  ++VD+YAK   +  A + F+ +  K+V +WN+M+  +
Sbjct: 77  RIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMY 135

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
              G   + ++    + +    P++ T + +LS+    +     RQ+H   IK G++   
Sbjct: 136 SSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNS 195

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
               AL++ Y+KC  +  A + F  + +P+ V WT +   Y   GL +E++ VFE+M   
Sbjct: 196 YCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGE 255

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
             RPD +AF+ V++     G + +    F  M S     PD   +  +    G+ G  + 
Sbjct: 256 GHRPDHLAFVTVINTYISLGKLKDARLLFGEMPS-----PDVVAWNVMISGHGKRGCEIV 310

Query: 520 AYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           A +   +M    ++    TLG+ + A  +  ++ L      + ++L         L SN+
Sbjct: 311 AIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL--------GLASNI 362

Query: 577 Y 577
           Y
Sbjct: 363 Y 363


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 321/588 (54%), Gaps = 22/588 (3%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           + Y   L    + G L   + +H H+ K G    + +   +++ Y++C A  D  +LFD 
Sbjct: 79  AMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDG 138

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           M  RN+VTW  L++G      N  P      F  ML       H T  + L AC+ + D+
Sbjct: 139 MPERNVVTWTALVTGYTL---NSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDV 195

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           ++G+++H + +K G      + ++L  LY K G ++ A R F  +  ++++ W  M+S  
Sbjct: 196 DLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISAC 255

Query: 239 ALN--CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           A +  C+  G +++F  M ++G+  + FT +S+++ CGT     LG+Q+     K   + 
Sbjct: 256 AEDEECVELG-LSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCET 314

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----------G 345
           ++ V  S + +Y + G  D+A R+F+ M   ++++WN M+ G+ Q  D           G
Sbjct: 315 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRG 374

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            +A+ + RD+ +    PD  T +SILS C ++    +  Q+HA  IK+G  + + + +AL
Sbjct: 375 FQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 434

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +N Y+KCG I  A + F  +     VTWTS+I  Y+ HG  +E+I++FE+M    VRP+ 
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I F+ +LSACS+ GLV E   YF++M  +Y I P  +HY C+ D+  R+G + +A+  + 
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIK 554

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
               EP      + +  C+ HG++ LA +AA+KLLEL+P     Y L+ N+Y S   W D
Sbjct: 555 RTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQD 614

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           VAR+RK+M+      +   SWI I  +++ F ++DR+HPQA  +Y +L
Sbjct: 615 VARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLL 662



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 188/388 (48%), Gaps = 13/388 (3%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML +   +    +  LL  CV+   +   R +H  + K G G + FV+++LV+ Y +CG 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
             DARR+FD +  R++V W  +V+ Y LN      + VF  M   G    ++T  + +N+
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C       LG+Q+HG  IK   +    +  SL  +YAK G++D A R F  +  KNV++W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 333 NTMVVGFGQNGDGRE-AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
            TM+    ++ +  E  + L  DML     P+E TL S++S CG+       +QV A++ 
Sbjct: 249 TTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSF 308

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA---------F 442
           K G +  L ++N+ +  Y + G    A++ F  +++  ++TW ++I  YA          
Sbjct: 309 KIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368

Query: 443 HGLSK--ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
              S+  +++ +F  +    ++PD   F  +LS CS    + +G +     I     L D
Sbjct: 369 QARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSD 427

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               + L ++  + G + +A      MP
Sbjct: 428 VVVNSALVNMYNKCGCIQDANKAFLEMP 455


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 300/517 (58%), Gaps = 11/517 (2%)

Query: 128 NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           N+ +WN++I+ +   G +V     F  M   +++ +  TF   +++C    D+  GR+ H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              L  GF  + FVSSALVD+Y KCG + DAR +FDE+  R++V W  M++ Y  N    
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235

Query: 246 GAIAVFN--LMRLEGMKGD------YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
            A+ +F   L+   G +GD           S++++C  +    +   +HG +IK+ F+ D
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGD 295

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + V  +L+D YAK G +  + RVFDGM  ++V+SWN+++  + QNG   E++++   M++
Sbjct: 296 LGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 355

Query: 358 -GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            G    + VTL+++L +C         + +H   IK G+++ + +  ++I+ Y KCG + 
Sbjct: 356 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 415

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  ++E ++ +W++++  Y  HG +KE++EVF +M    V+P+ I F+ VL+ACS
Sbjct: 416 MARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GL+ EG  +F  M  ++ + P  EHY C+ DLLGR G L EA+DL+  M + P     
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 535

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GAC++H ++ L + +A KL EL+P     Y L+SN+YA    W DV R+R +M+++
Sbjct: 536 GALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNS 595

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              K PG S ++I G +H F+  DR HPQ   +Y  L
Sbjct: 596 GLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYL 632



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 205/397 (51%), Gaps = 21/397 (5%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +  A+K  +    L  G+Q H   +  G    L + + ++ +Y KC    D   LFDE
Sbjct: 153 STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDE 212

Query: 124 MRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD--------NVRLDHITFNSLLRACV 173
           +  RNIV+W ++I+G +  +        F+  L++         V +D I   S+L AC 
Sbjct: 213 ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           +  +  +   +H F++K GF  +  V + L+D Y KCG +  +RRVFD +  RD++ WN 
Sbjct: 273 RVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNS 332

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++ YA N +   ++ +F+ M  +G +  +  T S+++ +C   GS +LG+ IH  VIK 
Sbjct: 333 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 392

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             + +V V TS++DMY K G ++ A + FD M  KNV SW+ MV G+G +G  +EA+++ 
Sbjct: 393 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 452

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGVQAFLSIENALIN 407
            +M      P+ +T  S+L++C    +  E         H + ++ GV+ +      +++
Sbjct: 453 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY----GCMVD 508

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
              + G +  A      +K  PD V W +++GA   H
Sbjct: 509 LLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 545



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G  + GK +H  ++K+GL + + +   ++ +Y KC   +   K FD MR 
Sbjct: 367 SAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE 426

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR-- 182
           +N+ +W+ +++G    G        F  M +  V+ ++ITF S+L AC  A  +E G   
Sbjct: 427 KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHW 486

Query: 183 -RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV-SCYA 239
            +  S    V  G+  +    +VDL G+ G++++A  +   +  R D V+W  ++ +C  
Sbjct: 487 FKAMSHEFDVEPGVEHY--GCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 544

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
              +  G I+   L  L+     Y+   S
Sbjct: 545 HKNVDLGEISARKLFELDPKNCGYYVLLS 573


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 211/599 (35%), Positives = 321/599 (53%), Gaps = 45/599 (7%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---LFDEMRVRNIVTWNTL 135
            +QG Q+H+  +  GL +++   ++++  +    + D ++    LF ++   N+  WNT+
Sbjct: 22  FKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTM 81

Query: 136 ISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           I G     N    +  Y   +       ++ TF  LL +C +   +E G  +HS I+K G
Sbjct: 82  IRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHG 141

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  + FV +AL+ LY   G +  AR +FDE L RDLV +N M+  YA     + A+ +F 
Sbjct: 142 FESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFG 201

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAK 310
            M+  G+  D FTF +L + C  L    +G+QIH  V K  +S D ++L+ +++VDMYAK
Sbjct: 202 EMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAK 261

Query: 311 NGNIDDACRV--------------------------------FDGMTAKNVVSWNTMVVG 338
            G I+ A RV                                F+ M  ++V+SW  M+ G
Sbjct: 262 CGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISG 321

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL-SISCETRQVHAYAIKNGVQA 397
           + Q G   EA++L ++M      PDEVTL ++LS+C  L +     R  H Y I+NGV  
Sbjct: 322 YSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQY-IENGVFN 380

Query: 398 FLSI-ENALINAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFHGLSKESIEVFE 454
             +I   A+++ Y+KCGSI  AL+ F  V +       + S+I   A HGL + +I VF 
Sbjct: 381 QNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFR 440

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +++S  ++PD + F+ VL AC H GL+ EG + F  M + Y I P  EHY C+ DLLGR 
Sbjct: 441 ELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRY 500

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G L EAYDL+  MP E  S    A + AC+ HG++ + + A +KLLE+E      Y L+S
Sbjct: 501 GCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLS 560

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           N+ A    W +  ++RK+M D+   K PG S+IE+ G IH FV+SD+SHPQ   +  ML
Sbjct: 561 NILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELML 619



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 202/420 (48%), Gaps = 49/420 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+   L+ G ++HSHI+K G  + L ++N ++H+Y      +    LFDE  VR++
Sbjct: 118 LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDL 177

Query: 130 VTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V++NT+I G   +N   +    F  M    +  D  TF +L   C   ++  VG+++H+ 
Sbjct: 178 VSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQ 237

Query: 188 ILK--VGFGLNCFVSSALVDLYGKCGFVEDARRVF------------DEVLC-------- 225
           + K       N  + SA+VD+Y KCG +  A RVF              ++C        
Sbjct: 238 VYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEI 297

Query: 226 ------------RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
                       RD++ W  M+S Y+       A+ +F  M   G+K D  T  +++++C
Sbjct: 298 NVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSAC 357

Query: 274 GTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGNIDDACRVFD--GMTAKNVV 330
             LG+  LG++++   I+   F+ + ++  +++DMYAK G+ID A  +F   G   K   
Sbjct: 358 ARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGF 417

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV---- 386
            +N+M+ G  Q+G G  A+ + R+++     PDEVT   +L +CG   +  E +++    
Sbjct: 418 VFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESM 477

Query: 387 -HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +AY IK  ++ +      +++   + G +  A      +  E + V W +++ A   HG
Sbjct: 478 FNAYGIKPQMEHY----GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHG 533


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 285/504 (56%), Gaps = 9/504 (1%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           + +ML    R +  TF   L++C       +G + H  I KVG     FV + L+ +Y K
Sbjct: 37  YPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCK 96

Query: 210 CGFVEDARRVFDEVL-CRDL-VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
              V++AR+VF+E    R L V +N +VS Y  N     A+ +F  M  EG+  +  T  
Sbjct: 97  GSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLL 156

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
            L+ +C +  + +LG  +H   +K  FD DV V    + MY K G+++ A ++FD M  K
Sbjct: 157 GLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 216

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
            ++SWN MV G+ QNG     ++L R+M      PD VTL  +LSSC +L       +V 
Sbjct: 217 GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 276

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
                +G  +   + NALIN Y++CG++  A   F  + E  LV+WT+IIG Y  HG  +
Sbjct: 277 FKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGE 336

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
            ++++F++M+   + PD  AF+ VLSACSH GL  +GL YF +M  +Y + P  EHY+C+
Sbjct: 337 IAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCM 396

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            DLLGR G L EA  L+ SMPI+P     GA +GACK+H ++ LA+ A E+++ELEP   
Sbjct: 397 VDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENI 456

Query: 568 VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
             Y L+SN+Y++      V R+R MM++    K PGCS++E+ G +H F+  DR+H Q+ 
Sbjct: 457 GYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSD 516

Query: 628 HMY-------AMLCTVFGLMEENN 644
            +Y       A++   FG  E++N
Sbjct: 517 EIYRVLEELEAIIMQEFGKPEKDN 540



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 227/457 (49%), Gaps = 20/457 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE-MRVR 127
           ALK  A       G Q H  I K+G   +  +Q  ++ +Y K    D+  K+F+E    R
Sbjct: 55  ALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSR 114

Query: 128 NI-VTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            + V +N L+SG ++   C   V   FR+M  + V ++ +T   L+ ACV   ++E+G  
Sbjct: 115 KLTVCYNALVSGYVSNSKCSEAVL-LFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSS 173

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH   LK GF  +  V +  + +Y KCG V  A+++FDE+  + L+ WN MVS YA N L
Sbjct: 174 LHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGL 233

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               + ++  M + G+  D  T   +++SC  LG+  +G ++   +    F  +  +  +
Sbjct: 234 ATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNA 293

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MYA+ GN+  A  VFDGM  + +VSW  ++ G+G +G G  AV+L ++M++    PD
Sbjct: 294 LINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPD 353

Query: 364 EVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
                 +LS+C    ++ +  +        Y ++ G + +    + +++   + G +  A
Sbjct: 354 GTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY----SCMVDLLGRAGRLKEA 409

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
                S+  +PD   W +++GA   H   + +   FE+++   + P++I +  +LS    
Sbjct: 410 QTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLSNIYS 467

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
               S+G+    +M+ +  +  D        +L GRV
Sbjct: 468 NANNSKGVLRIRIMMKEKKLKKDPG--CSYVELKGRV 502



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 153/321 (47%), Gaps = 8/321 (2%)

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN  +   A  C    A++++  M   G + + FTF   + SC  L    LG Q HG + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREA 348
           K     +  V T L+ MY K   +D+A +VF+    + K  V +N +V G+  N    EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALIN 407
           V L R M +     + VTL  ++ +C S  I+ E    +H   +K G  + +S+ N  I 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVS-PINLELGSSLHCSTLKYGFDSDVSVVNCFIT 195

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y KCGS+  A + F  +    L++W +++  YA +GL+   +E++  M  + V PD + 
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 255

Query: 468 FLEVLSACSHGGLVSEGLRY-FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            + VLS+C++ G  S G    F +  S +   P   +   L ++  R G L +A  +   
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDG 313

Query: 527 MPIEPRSDTLGAFIGACKVHG 547
           MP E    +  A IG   +HG
Sbjct: 314 MP-ERTLVSWTAIIGGYGMHG 333


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/555 (32%), Positives = 328/555 (59%), Gaps = 6/555 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L +SA     +  +++H + +K+GL ++++  N ++  Y KC +   + ++F+E   +N 
Sbjct: 268 LPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNE 327

Query: 130 VTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+WN++I+G+  C G   +    FR M+    + + +T +S+L   V+ +  + G+ +H 
Sbjct: 328 VSWNSIINGLA-CKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHG 386

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           F +++G   + F++++L+D+Y K G   +A  +F  +  R++V WN M++ YALN L   
Sbjct: 387 FSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLE 446

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI     M+  G   +  TF++++ +C  LG    G++IH + ++     D+ V+ SL+D
Sbjct: 447 AIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLID 506

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G +  A  VF+  + K+ VS+N +++G+ +  D  +++ L  +M      PD V+
Sbjct: 507 MYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVS 565

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
              ++S+C +L+   + ++VH  A++N + + L + N+L++ Y+KCG I  A + F  + 
Sbjct: 566 FVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQIL 625

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+ +W ++I  Y   G  + +I +FE M    V+ D ++++ VLSACSHGGLV  G +
Sbjct: 626 FKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQ 685

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF+ M++   + P   HYTC+ DLLGR G + EA  L+  +PI P ++  GA +GAC+++
Sbjct: 686 YFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIY 744

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G++ L + AAE L EL+P     Y L+SN+YA    W +  ++R++M+     K PGCSW
Sbjct: 745 GNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSW 804

Query: 607 IEIAGEIHTFVSSDR 621
           ++I  ++H FV+ +R
Sbjct: 805 VQIYDQVHAFVAEER 819



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 229/410 (55%), Gaps = 10/410 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G ++H  + KLG    + + N +L +Y  C   +D  +LFDEM  R++V+WNT+I G++
Sbjct: 177 KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTII-GLL 235

Query: 141 NCGGNVTP----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +  G+ T     YF  +L   ++ + ++  SLL      +D E+ RR+H + +KVG    
Sbjct: 236 SVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQ 295

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLM 254
               +ALVD YGKCG V+   +VF+E + ++ V WN +++   L C G    A+  F +M
Sbjct: 296 VTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIIN--GLACKGRCWDALNAFRMM 353

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G + +  T SS++     L   K G++IHG  ++   + D+ +A SL+DMYAK+G+ 
Sbjct: 354 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHS 413

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            +A  +F  +  +N+VSWN M+  +  N    EA++ +  M +   CP+ VT  ++L +C
Sbjct: 414 TEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPAC 473

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L      +++HA  ++ G+ + L + N+LI+ Y+KCG +  A   F + ++ D V++ 
Sbjct: 474 ARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRK-DEVSYN 532

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +I  Y+      +S+ +F +M     +PD ++F+ V+SAC++   + +G
Sbjct: 533 ILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG 582



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 212/424 (50%), Gaps = 11/424 (2%)

Query: 70  LKVSAKFGFLQQGKQLHS-HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE--MRV 126
           L + +K   L Q KQ+H+  I+   L   +SL   ++  Y K +       LF++     
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNC 120

Query: 127 RNIVTWNTLISG-IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           R    WNTLI    I   G    +  + RM+   V+LD  TF  +L+ C  + DI  G  
Sbjct: 121 RTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGME 180

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  + K+GF  + +V + L+ LYG CGF+ DARR+FDE+  RD+V WN ++   ++N  
Sbjct: 181 VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVN-- 238

Query: 244 GDGAIA---VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           GD   A    F ++    +K +  +  SL+     L   ++ R+IH   +K   D  V  
Sbjct: 239 GDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 298

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +LVD Y K G++    +VF+    KN VSWN+++ G    G   +A+   R M+    
Sbjct: 299 CNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGA 358

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+ VT++SIL     L      +++H ++++ G +  + I N+LI+ Y+K G    A  
Sbjct: 359 QPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAST 418

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F ++   ++V+W ++I  YA + L  E+I    +M      P+++ F  VL AC+  G 
Sbjct: 419 IFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGF 478

Query: 481 VSEG 484
           +  G
Sbjct: 479 LGPG 482



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 169/328 (51%), Gaps = 10/328 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A+ GFL  GK++H+  +++GL + L + N ++ +Y KC        +F+  R
Sbjct: 466 FTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR 525

Query: 126 VRNIVTWNTLISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            ++ V++N LI G     +C  ++   F  M L   + D ++F  ++ AC     ++ G+
Sbjct: 526 -KDEVSYNILIIGYSETDDCLQSLN-LFSEMRLLGKKPDVVSFVGVISACANLAALKQGK 583

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H   L+     + FVS++L+D Y KCG ++ A R+F+++L +D+  WN M+  Y +  
Sbjct: 584 EVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIG 643

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + AI++F  MR + ++ D  ++ +++++C   G  + G Q    ++ Q  +   +  T
Sbjct: 644 ELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYT 703

Query: 303 SLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVG---FGQNGDGREAVKLLRDMLQG 358
            +VD+  + G +++A ++   +  A +   W  ++     +G    GR A + L + L+ 
Sbjct: 704 CMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFE-LKP 762

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQV 386
             C   + L++I +  G    + + R++
Sbjct: 763 QHCGYYILLSNIYAETGRWDEANKIREL 790


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/465 (37%), Positives = 273/465 (58%), Gaps = 1/465 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   +N+LL+ C     +  GR +H+ IL+  F  +  + + L+++Y KCG +E+AR+VF
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           +++  RD V W  ++S Y+ +     A+  FN M   G   + FT SS++ +        
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G Q+HG  +K  FD +V V ++L+D+Y + G +DDA  VFD + ++N VSWN ++ G  
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           +     +A++L + ML+  F P   + AS+  +C S     + + VHAY IK+G +    
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
             N L++ Y+K GSI  A + F  + + D+V+W S++ AYA HG  KE++  FE+M    
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           +RP+ I+FL VL+ACSH GL+ EG  Y+ LM  D  I+P++ HY  + DLLGR G L  A
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
              +  MPIEP +    A + AC++H +  L  +AAE + EL+P  P  + ++ N+YAS 
Sbjct: 418 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 477

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
             W D AR+RK M+++   K P CSW+EI   IH FV++D  HPQ
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 522



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 206/382 (53%), Gaps = 3/382 (0%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           FY+  LK    F  L QG+ +H+HI++    + + + N +L++Y KC + ++  K+F++M
Sbjct: 62  FYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKM 121

Query: 125 RVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R+ VTW TLISG        +   +F +ML      +  T +S+++A         G 
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LH F +K GF  N  V SAL+DLY + G ++DA+ VFD +  R+ V WN +++ +A   
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ +F  M  +G +  +F+++SL  +C + G  + G+ +H  +IK    L      
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK+G+I DA ++FD +  ++VVSWN+++  + Q+G G+EAV    +M +    P
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRP 361

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E++  S+L++C    +  E    +    K+G+         +++   + G +  AL+  
Sbjct: 362 NEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 423 GSVK-EPDLVTWTSIIGAYAFH 443
             +  EP    W +++ A   H
Sbjct: 422 EEMPIEPTAAIWKALLNACRMH 443



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 185/397 (46%), Gaps = 38/397 (9%)

Query: 31  TTTITNAQKHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQL 85
           TT I+   +HDR        +  LR   + +E T       S  +K +A       G QL
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT------LSSVIKAAAAERRGCCGHQL 183

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG- 144
           H   +K G  + + + + +L +Y +    DD + +FD +  RN V+WN LI+G     G 
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 145 -NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
                 F+ ML D  R  H ++ SL  AC     +E G+ +H++++K G  L  F  + L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D+Y K G + DAR++FD +  RD+V WN +++ YA +  G  A+  F  MR  G++ + 
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            +F S++ +C   G    G   + L+ K     +     ++VD+  + G+++ A R  + 
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 324 MTAKNVVS-WNTMVVGFGQNGDGREAVKLLRDMLQGSFC--------PDE----VTLASI 370
           M  +   + W  ++           A ++ ++   G++         PD+    V L +I
Sbjct: 424 MPIEPTAAIWKALL----------NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473

Query: 371 LSSCGSLSISCETRQ--VHAYAIKNGVQAFLSIENAL 405
            +S G  + +   R+    +   K    +++ IENA+
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 308/569 (54%), Gaps = 2/569 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  LK  A    L+QG+ +HS I+K G      +   ++ +Y KC    D   +F  ++ 
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +IV W+ LI+ +   G +      F  M L +   +  T  SLL A     +++ G+ +
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ + K GF  +  VS+ALV +Y K G V D  ++++ ++ RDL+ WN  +S      + 
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMY 497

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D  + +F  M  EG   + +TF S++ SC  L     GRQ+H  +IK   D +  V T+L
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTAL 557

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK   ++DA   F+ ++ +++ +W  ++  + Q   G +A+   R M Q    P+E
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            TLA  LS C SL+     +Q+H+   K+G  + + + +AL++ Y+KCG +  A   F +
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEA 677

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D + W +II  YA +G   +++  F  ML   + PD + F  +LSACSH GLV EG
Sbjct: 678 LIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEG 737

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             +FN M  D+ I P  +H  C+ D+LGRVG   E  D +  M +   +      +GA K
Sbjct: 738 KEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASK 797

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H ++ L + AA KL EL+P +  +Y L+SN++A+E  W DV R+R +M      K PGC
Sbjct: 798 MHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGC 857

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SW+E  G++HTFVS D SHPQ   ++  L
Sbjct: 858 SWVEANGQVHTFVSHDYSHPQIQEIHLKL 886



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 235/461 (50%), Gaps = 6/461 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+H+   KLGL   L + + ++ +Y KC   +   K+F  M  +N VTWN L++G
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G    V   F  M+  +V+ +  T  ++L+ C  + +++ G+ +HS I+K G+  N
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN 348

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F+   LVD+Y KCG   DA  VF  +   D+V+W+ +++C       + +I +F+LMRL
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
                + +T  SL+++    G+ + G+ IH  V K  F+ DV V+ +LV MY KNG + D
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD 468

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             ++++ M  ++++SWN  + G    G     + +   ML+  F P+  T  SIL SC  
Sbjct: 469 GTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC 528

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L      RQVHA+ IKN +     +  ALI+ Y+KC  +  A   F  +   DL TWT I
Sbjct: 529 LFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVI 588

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA     ++++  F +M    V+P+       LS CS    +  G +  +++    H
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH 648

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
           +  D    + L D+  + G + EA  L  ++    R DT+ 
Sbjct: 649 V-SDMFVGSALVDMYAKCGCMEEAEALFEAL---IRRDTIA 685



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 214/421 (50%), Gaps = 2/421 (0%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S+     +YS  L+  A    L   K +H  I+K  +     L   +++VY KC+     
Sbjct: 107 SSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYA 166

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCG-GNVTPY-FRRMLLDNVRLDHITFNSLLRACVQA 175
             +  +M  R++V+W  LI G++  G  N + Y F+ M  + +  +  T  + L+AC   
Sbjct: 167 RLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLC 226

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
             +++G+++H+   K+G  L+ FV SALVDLY KCG +E A ++F  +  ++ V WNV++
Sbjct: 227 MALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLL 286

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + YA      G + +F  M    +K + FT ++++  C    + K G+ IH L+IK  ++
Sbjct: 287 NGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE 346

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            +  +   LVDMY+K G   DA  VF  +   ++V W+ ++    Q G   E++KL   M
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
             G   P++ T+ S+LS+  +       + +HA   K G +  +++ NAL+  Y K G +
Sbjct: 407 RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCV 466

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
               + + S+ + DL++W + +      G+    + +F  ML     P+   F+ +L +C
Sbjct: 467 HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526

Query: 476 S 476
           S
Sbjct: 527 S 527



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 169/320 (52%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++S+LR C     + V + +H  I+K     +  +  +LV++Y KC +   AR V  ++ 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RD+V W  ++         + +I +F  M+ EG+  + FT ++ + +C    +  LG+Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H    K    LD+ V ++LVD+YAK G I+ A ++F GM  +N V+WN ++ G+ Q GD
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
               +KL   M++     +E TL ++L  C +     + + +H+  IK G +    I   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ YSKCG    A+  F ++K+PD+V W+++I      G S+ESI++F  M      P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 465 SIAFLEVLSACSHGGLVSEG 484
                 +LSA ++ G +  G
Sbjct: 415 QYTICSLLSAATNTGNLQYG 434


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 304/573 (53%), Gaps = 47/573 (8%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S ++   +  A    L+ G QLH H +K      + +    L +Y+KC    D +KLF
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 122 DEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC-VQADDIEV 180
           + +   N+ ++N +I G          Y R      + LD ++ +   RAC V   D+E 
Sbjct: 334 NSLPNHNLQSYNAIIVG----------YARSD--KGLGLDEVSLSGAFRACAVIKGDLE- 380

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H   +K     N  V++A++D+YGKCG + +A  VF+E++ RD V WN +++ +  
Sbjct: 381 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 440

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N   +  +++F                                 IH  +IK    LD  V
Sbjct: 441 NGNEEKTLSLF---------------------------------IHNRIIKSRLGLDSFV 467

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L+DMY+K G ++ A ++ D +  + VVSWN ++ GF       EA K    ML+   
Sbjct: 468 GIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGV 527

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD  T A+IL +C +L      +Q+HA  IK  +Q+   I + L++ YSKCG++     
Sbjct: 528 DPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQL 587

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F      D VTW +++  YA HGL +E++++FE M    V+P+   FL VL AC H GL
Sbjct: 588 IFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGL 647

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V +GL YF+ M+S+Y + P  EHY+C+ D++GR G + +A +L+  MP E  +      +
Sbjct: 648 VEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLL 707

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
             CK+HG++ +A+ AA  +L+LEP     Y L+SN+YA+   W +V +LRKMMR N   K
Sbjct: 708 SICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKK 767

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PGCSWIEI  E+H F+  D++HP++  +Y  L
Sbjct: 768 EPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENL 800



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 259/554 (46%), Gaps = 73/554 (13%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC---- 111
           +++T +    +S   +  +    L  GKQ H+ ++       + + N ++ +Y+KC    
Sbjct: 35  YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLE 94

Query: 112 ---KAFDDM------------------------EKLFDEMRVRNIVTWNTLISGIINCGG 144
              K FD M                        +KLFD M  R++V+WN+LISG ++ G 
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGD 154

Query: 145 N--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           +  V   F +M       D  TF  +L++C   +D   G ++H   +K+GF  +    SA
Sbjct: 155 HRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSA 214

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D+Y KC  ++ + + F  +  ++ V W+ +++    N    G + +F  M+  G+   
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVS 274

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF+S+  SC  L + +LG Q+HG  +K  F  DV++ T+ +DMY K  N+ DA ++F+
Sbjct: 275 QSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFN 334

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +   N+ S+N ++VG+ ++  G                 DEV+L+    +C  +    E
Sbjct: 335 SLPNHNLQSYNAIIVGYARSDKG--------------LGLDEVSLSGAFRACAVIKGDLE 380

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             QVH  ++K+  Q+ + + NA+++ Y KCG++  A   F  +   D V+W +II A+  
Sbjct: 381 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 440

Query: 443 HGLSKESIEVF--EKMLSHAVRPDS---IAFLEVLSACS--------HGGLVSEGLRYFN 489
           +G  ++++ +F   +++   +  DS   IA +++ S C         H  L  + +  +N
Sbjct: 441 NGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWN 500

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            +IS + +   SE                + +  +  M ++P + T    +  C    ++
Sbjct: 501 AIISGFSLQKQSEEAQ-------------KTFSKMLEMGVDPDNFTYATILDTCANLVTV 547

Query: 550 GLAKWAAEKLLELE 563
            L K    ++++ E
Sbjct: 548 ELGKQIHAQIIKKE 561



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 221/494 (44%), Gaps = 64/494 (12%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G Q+H   +K+G    +   + +L +Y KCK  D   + F  M  +N V+W+ +I+G + 
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 142 C----GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                GG     F+ M    V +   TF S+ R+C     + +G +LH   LK  FG + 
Sbjct: 253 NDDLRGG--LELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            + +A +D+Y KC  + DA+++F+ +   +L  +N ++  YA +  G G           
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGL---------- 360

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
               D  + S    +C  +     G Q+HGL +K     ++ VA +++DMY K G + +A
Sbjct: 361 ----DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEA 416

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
           C VF+ M +++ VSWN ++    QNG+  + + L                          
Sbjct: 417 CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF------------------------- 451

Query: 378 SISCETRQVHAYAIKN--GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                   +H   IK+  G+ +F+ I  ALI+ YSKCG +  A +    + E  +V+W +
Sbjct: 452 --------IHNRIIKSRLGLDSFVGI--ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNA 501

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           II  ++    S+E+ + F KML   V PD+  +  +L  C++   V  G +  +  I   
Sbjct: 502 IISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG-KQIHAQIIKK 560

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD--TLGAFIGACKVHGSIGLAK 553
            +  D+   + L D+  + G +    D        P  D  T  A +     HG +G   
Sbjct: 561 ELQSDAYISSTLVDMYSKCGNM---QDFQLIFEKAPNRDFVTWNAMVCGYAQHG-LGEEA 616

Query: 554 WAAEKLLELEPSKP 567
               + ++LE  KP
Sbjct: 617 LKIFEYMQLENVKP 630


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 320/585 (54%), Gaps = 15/585 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKL----------GLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           L +  + G+L  G  LH+ I+K            L N + + N +L +Y +C    D  K
Sbjct: 51  LSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATK 110

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFR--RMLLDN--VRLDHITFNSLLRACVQA 175
           +FD M +++ ++WN+ ISG++   G++   FR  + L ++   + D  T  ++L AC + 
Sbjct: 111 VFDHMPMKDTISWNSRISGLLG-NGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKP 169

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
           +   V + +HS +   G+     V +AL+  Y +CG     RRVFDE+  +++V W  ++
Sbjct: 170 EFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVI 229

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S  +     + ++ +F  MR   +  +  T+ S + +C  L + + GRQIHGLV K    
Sbjct: 230 SGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVH 289

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D+ + ++L+DMY+K G+++DA ++F+     + VS   ++VG  QNG   E++++   M
Sbjct: 290 FDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKM 349

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           ++     D   +++IL   G  +     +Q+H+  IK    +   + N LIN YSKCG +
Sbjct: 350 VKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDL 409

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             +++ F  + + + V+W S+I A+A HG    +++++E+M    V P  + FL +L AC
Sbjct: 410 DDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHAC 469

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           +H GLV +G+ +   M  DY I P  EHY C+ D++GR GLL EA   +  +P +P    
Sbjct: 470 AHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILV 529

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             A +GAC +HG+  + K+AA +L    P  P  Y L++N+Y+SE  W + AR  K M+D
Sbjct: 530 WQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKD 589

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
               K  G SWIEI  +IH+FV  DR HP A  +Y +L  +F LM
Sbjct: 590 MGVTKETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLM 634



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 220/464 (47%), Gaps = 39/464 (8%)

Query: 142 CGGNVTPYFRRMLLDN-------VRLDHITFNSLLRACVQADDIEVGRRLHSFILK-VGF 193
           C   V+   + ++L N         ++ +  + LL  C +   + +G  LH+ I+K  GF
Sbjct: 17  CTSPVSSPLKTLILQNPYSETSKFAINQVDISFLLSLCGREGYLHLGSSLHASIIKNFGF 76

Query: 194 --GLN-------CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
             G N         V ++L+ +Y +CG + DA +VFD +  +D + WN  +S      LG
Sbjct: 77  LDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRIS----GLLG 132

Query: 245 DGAIA----VFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           +G I     VF  +   G+ + D  T ++++ +C       + + IH LV    ++ ++ 
Sbjct: 133 NGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREIT 192

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  +L+  Y + G      RVFD M+ KNVV+W  ++ G  Q     E++KL   M  G 
Sbjct: 193 VGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGP 252

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+ +T  S L +C  L    E RQ+H    K GV   L IE+AL++ YSKCGS+  A 
Sbjct: 253 VDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAW 312

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F S +E D V+ T I+   A +G  +ESI+VF KM+ + V  D      +L       
Sbjct: 313 KIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDT 372

Query: 480 LVSEGLRYFNLMI-----SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
            ++ G +  +L+I     S+Y +         L ++  + G L ++  +   MP +  S 
Sbjct: 373 SLALGKQIHSLIIKKSFGSNYFV------NNGLINMYSKCGDLDDSIKIFCWMP-QRNSV 425

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           +  + I A   HG+   A    E+ + LE   P +   +S ++A
Sbjct: 426 SWNSMIAAFARHGNGSRALQLYEE-MRLEGVWPTDVTFLSLLHA 468



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 164/323 (50%), Gaps = 20/323 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y  +L   +    +++G+Q+H  + KLG+   L +++ ++ +Y KC + +D  K+F+   
Sbjct: 260 YLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAE 319

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V+   ++ G+   G        F +M+ + V +D    +++L        + +G++
Sbjct: 320 EVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQ 379

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS I+K  FG N FV++ L+++Y KCG ++D+ ++F  +  R+ V WN M++ +A +  
Sbjct: 380 IHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGN 439

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G  A+ ++  MRLEG+     TF SL+++C  +G  +      G+   +S   D  +   
Sbjct: 440 GSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVE-----KGMGFLESMAKDYGIGPR 494

Query: 304 L------VDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLR 353
           +      VDM  + G +++A +  + +  K  ++ W  ++     +G+   G+ A   L 
Sbjct: 495 MEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQL- 553

Query: 354 DMLQGSFCPDE-VTLASILSSCG 375
             LQ    P   + LA+I SS G
Sbjct: 554 -FLQAPESPAPYILLANIYSSEG 575


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 320/587 (54%), Gaps = 38/587 (6%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTLISGI 139
           + +H+ ++K GL N     ++++   V    FD +     +F+ ++  N++ WNT+  G 
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 140 INCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                 V+  +  + + ++ L  +  TF  LL++C ++     G+++H  +LK+G+ L+ 
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 198 FVSSALVDLYGKCGFVEDARRVFD-------------------------------EVLCR 226
           +V ++L+ +Y + G +EDAR+VFD                               E+  +
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D+V WN M+S YA       A+ +F  M    ++ D  T  S+V++C    S +LGRQ+H
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 243

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +    F  ++ +  +L+D+Y K G ++ AC +F+G++ K+V+SWNT++ G+      +
Sbjct: 244 SWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYK 303

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLSIENA 404
           EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y  K   GV    S   +
Sbjct: 304 EALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 363

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  + ++F +M  + + PD
Sbjct: 364 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 423

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I F+ +LSACSH G++  G   F  M  DY I P  EHY C+ DLLG  GL  EA +++
Sbjct: 424 DITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI 483

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +M +EP      + + ACK+HG++ L +  A+ L+++EP  P +Y L+SN+YA+   W 
Sbjct: 484 NTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWN 543

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           +VA++R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y 
Sbjct: 544 EVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 590



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 4/216 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+   ++ G+Q+HS I   G  + L + N ++ +Y+KC   +    LF+ +  +++++WN
Sbjct: 231 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 290

Query: 134 TLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           TLI G   +N        F+ ML      + +T  S+L AC     IE+GR +H +I K 
Sbjct: 291 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 350

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             G+    S  ++L+D+Y KCG +E A++VFD +L R L  WN M+  +A++   + A  
Sbjct: 351 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 410

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +F+ MR   ++ D  TF  L+++C   G   LGR I
Sbjct: 411 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 446


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 323/557 (57%), Gaps = 6/557 (1%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H S  +AH   ++ +   AK G +  G QLHS I+K+G  + + + + ++ +Y KC A  
Sbjct: 73  HGSAPTAH-ILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVS 131

Query: 116 DMEKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
             ++LFDEM  RN+VTWN+LISG   + C       F  M+   +     + +++L  C 
Sbjct: 132 SAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCW 191

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           + +D ++G ++H   +K GF  N  V + L+DLY K   ++ +R +FD +  R+++ W  
Sbjct: 192 RMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTS 251

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           MV+ YA       A+ +   M+  G++ +Y T++ L++S  +       +Q+H  +I++ 
Sbjct: 252 MVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREG 311

Query: 294 FDLDVLVATSLVDMYAK--NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
            + +  +  +LV +Y++  + +++D  +V  G+T  + +SWN ++ G    G+G  A+K 
Sbjct: 312 LESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKC 371

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              M Q     D  T  S+L + G +S   E +Q+HA  +K G  + L+++N L++ Y++
Sbjct: 372 FSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYAR 431

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CGSI  A + F  +   D+++W S++   A+HG  +E++E+FE+M    V+PD+  FL V
Sbjct: 432 CGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVV 491

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHI-LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           LSAC H GL+ +GL YF+LM +DY +  P +EHY+ + DL  R G L EA D + +MPIE
Sbjct: 492 LSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIE 551

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P      A + AC+VHG++ +A   A+KLL++ P+ PV Y L+SNV A+   W +VA +R
Sbjct: 552 PGPSVYKALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIR 611

Query: 591 KMMRDNCDHKVPGCSWI 607
           K+M D    K PG SWI
Sbjct: 612 KVMCDRGVRKEPGYSWI 628


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 301/550 (54%), Gaps = 6/550 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    K + +   +  G  +H  I++        +QN +L +Y+     +    +FD M+
Sbjct: 120 YPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMK 179

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++++WNT+ISG    G   +    F  M+ + V  DH T  S+L  C     +E+GR 
Sbjct: 180 NRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRN 239

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  + +   G    V +ALV++Y KCG +++AR VF  +  RD++ W  M++ Y  +  
Sbjct: 240 VHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGD 299

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +  LM+ EG++ +  T +SLV++CG       G+ +HG  I+Q    D+++ TS
Sbjct: 300 VENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETS 359

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYAK  +ID   RVF G +  +   W+ ++ G  QN   R+A+ L + M +    P+
Sbjct: 360 LISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPN 419

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL S+L +  +L+   +T  +H Y  K G  + L     L++ YSKCG++  A + F 
Sbjct: 420 IATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFN 479

Query: 424 SVKEP----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            ++E     D+V W ++I  Y  HG    +++VF +M+   V P+ I F   L+ACSH G
Sbjct: 480 GIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSG 539

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EGL  F+ M+  Y  L  S HYTC+ DLLGR G L EAY+L+ ++P EP S   GA 
Sbjct: 540 LVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGAL 599

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC  H ++ L + AA KL ELEP    NY L++N+YA+   W D+ ++R MM +    
Sbjct: 600 LAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGLR 659

Query: 600 KVPGCSWIEI 609
           K PG S IEI
Sbjct: 660 KKPGHSTIEI 669



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 243/489 (49%), Gaps = 9/489 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L   A    + + K LH H++  G  +   L    +  Y  C       KLFDEM 
Sbjct: 18  YQSLLNHYAATQSISKTKALHCHVITGGRVSGHILSTLSV-TYALCGHIAYARKLFDEMP 76

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVG 181
             +++++N +I   +  G   +    F RM+ + ++   D  T+  + +A  +   I +G
Sbjct: 77  QSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLG 136

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +H  IL+  FG++ +V +AL+ +Y   G VE AR VFD +  RD++ WN M+S Y  N
Sbjct: 137 LVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRN 196

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A+ +F+ M  EG+  D+ T  S++  CG L   ++GR +H LV ++     + V 
Sbjct: 197 GYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVK 256

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +LV+MY K G +D+A  VF  M  ++V++W  M+ G+ ++GD   A++L R M      
Sbjct: 257 NALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVR 316

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+ VT+AS++S+CG      + + +H +AI+  V + + IE +LI+ Y+KC  I    + 
Sbjct: 317 PNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRV 376

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F          W++II     + L ++++++F++M    V P+      +L A +    +
Sbjct: 377 FSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADL 436

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL---GA 538
            + +   +  ++    +   +  T L  +  + G L  A+ +   +  + +S  +   GA
Sbjct: 437 RQTMN-IHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGA 495

Query: 539 FIGACKVHG 547
            I    +HG
Sbjct: 496 LISGYGMHG 504



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 195/397 (49%), Gaps = 8/397 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++E     H+     L V      L+ G+ +H  + +  L +K+ ++N ++++Y+KC   
Sbjct: 210 VNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D+   +F  M  R+++TW  +I+G I  G   N     R M  + VR + +T  SL+ AC
Sbjct: 270 DEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSAC 329

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             A  +  G+ LH + ++     +  + ++L+ +Y KC  ++   RVF          W+
Sbjct: 330 GDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWS 389

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++    N L   A+ +F  MR E ++ +  T +SL+ +  TL   +    IH  + K 
Sbjct: 390 AIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKT 449

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGM----TAKNVVSWNTMVVGFGQNGDGREA 348
            F   +  AT LV +Y+K G ++ A ++F+G+     +K+VV W  ++ G+G +GDG  A
Sbjct: 450 GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNA 509

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALIN 407
           +++  +M++    P+E+T  S L++C    +  E   + ++ +++    A  +    +++
Sbjct: 510 LQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVD 569

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
              + G +  A     ++  EP    W +++ A   H
Sbjct: 570 LLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTH 606


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 301/551 (54%), Gaps = 17/551 (3%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL------ 160
           +YVKC   D   ++F  MR RN+V+W  L+ G +   G+ T   R  LL  +R       
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLR-HGDATGCLR--LLGEMRTASEAAP 57

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +  T ++ L+AC    D   G  +H   ++ G+  +  V+S+LV +Y K G + DARRVF
Sbjct: 58  NEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVF 117

Query: 221 DEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL-EGM-KGDYFTFSSLVNSCGTLG 277
           D   L   +  WN MVS YA    G  A+ VF  MR  EG  + D FTF+SL+ +C  LG
Sbjct: 118 DGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLG 177

Query: 278 SSKLGRQIHGLVIKQSFDL--DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           +++ G Q+H  +    F    + ++A +LVDMY K   +  A +VF+ +  KNV+ W  +
Sbjct: 178 ATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAV 237

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           VVG  Q G   EA++L R   +    PD   L+S++      ++  + RQVH Y IK+  
Sbjct: 238 VVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPT 297

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              +S  N++++ Y KCG    A + F  ++ P++V+WT+++     HGL +E++ +FE+
Sbjct: 298 GTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEE 357

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M +  V PD + +L +LSACSH GLV E  RYF+ +  D  + P +EHY C+ DLLGR G
Sbjct: 358 MRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAG 417

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            L EA DL+ +MP+EP        + AC+VH  + + + A + LL ++   PVNY  +SN
Sbjct: 418 ELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSN 477

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV---SSDRSHPQAVHMYAM 632
           V A    W +  ++R  MR     K  GCSW+E+  E+H F      + +HPQA  +  +
Sbjct: 478 VLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRV 537

Query: 633 LCTVFGLMEEN 643
           L  +   M E 
Sbjct: 538 LRDMETRMREQ 548



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 157/332 (47%), Gaps = 13/332 (3%)

Query: 56  HESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS--LQNQVLHVYVKCK 112
           HE  H    F ++  LK  +  G  ++G Q+H+ +   G     +  L   ++ +YVKC+
Sbjct: 155 HEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCR 214

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT---PYFRRMLLDNVRLDHITFNSLL 169
                 ++F+ +  +N++ W  ++ G     G VT     FRR      R D    +S++
Sbjct: 215 RLPVAMQVFERLERKNVIQWTAVVVGHAQ-EGQVTEALELFRRFWRSGARPDSHVLSSVV 273

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
                   +E GR++H + +K   G +    +++VD+Y KCG  ++A R+F E+   ++V
Sbjct: 274 GVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVV 333

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  MV+    + LG  A+A+F  MR  G++ D  T+ +L+++C   G     R+    +
Sbjct: 334 SWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCI 393

Query: 290 IK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMVVGFGQNGD--- 344
            + ++          +VD+  + G + +A  +   M  +  V  W T++     + D   
Sbjct: 394 RRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAV 453

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           GREA  +L  M  G    + VTL+++L+  G 
Sbjct: 454 GREAGDVLLAM-DGDNPVNYVTLSNVLAEAGE 484


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 307/557 (55%), Gaps = 19/557 (3%)

Query: 84  QLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           QLH+  ++LGL    +     ++H Y++     +  K+FDEM  R++  WN ++SG+   
Sbjct: 88  QLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRN 147

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                    F RM+ + V  D +T +S+L  CV   D  +   +H + +K G     FV 
Sbjct: 148 ARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVC 207

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+D+YGK G +E+A+ VF  + CRDLV WN ++S          A+ +F  MR  G+ 
Sbjct: 208 NALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVS 267

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA-TSLVDMYAKNGNIDDACR 319
            D  T  SL ++    G  +  + +H  V+++ +D+D ++A  ++VDMYAK  NI+ A R
Sbjct: 268 PDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQR 327

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM--------LQGSFCPDEVTLASIL 371
           +FD M  ++ VSWNT++ G+ QNG   EAV+    M        +QG+F        S+L
Sbjct: 328 MFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFV-------SVL 380

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +   L    +  ++HA +IK G+   + +   LI+ Y+KCG +A A+  F  +      
Sbjct: 381 PAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG 440

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            W +II     HG   E++ +F +M    ++PD + F+ +L+ACSH GLV +G  +F++M
Sbjct: 441 PWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVM 500

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
              Y I+P ++HY C+ D+LGR G L EA++ + +MPI+P S   GA +GAC++HG++ +
Sbjct: 501 QVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEM 560

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
            K A++ L EL+P     Y L+SN+YA    W  V  +R ++R     K PG S IE+  
Sbjct: 561 GKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKR 620

Query: 612 EIHTFVSSDRSHPQAVH 628
            ++ F S +++ P   H
Sbjct: 621 SVNVFYSGNQTEPHPQH 637



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 9/245 (3%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE   +    +   L   +  G LQQG ++H+  +K+GL   + +   ++ +Y KC    
Sbjct: 366 HEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLA 425

Query: 116 DMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           +   LF++M  R+   WN +IS  G+   G      F RM  + ++ DH+TF SLL AC 
Sbjct: 426 EAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACS 485

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVL 230
            A  ++ GR     +++V + +       + + D+ G+ G +++A      +  + D  +
Sbjct: 486 HAGLVDQGRSFFD-VMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAV 544

Query: 231 WNVMV-SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
           W  ++ +C     +  G +A  NL  L+     Y+   S  N    +G      ++  LV
Sbjct: 545 WGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMS--NMYAKVGKWDGVDEVRSLV 602

Query: 290 IKQSF 294
            +Q+ 
Sbjct: 603 RRQNL 607


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 309/566 (54%), Gaps = 44/566 (7%)

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG------GNVTPYFRRML 154
           +N +L  Y K    D   + F++M  R++V+WN +I+ +   G      G V    R+  
Sbjct: 207 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK-- 264

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
              VRLD  T+ S L AC +   +  G++LH+ +++    ++ +V+SAL++LY KCG  +
Sbjct: 265 --GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFK 322

Query: 215 DARRVFDEVLCRDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           +A+RVF+ +  R+ V W V++       C    ++ +FN MR E M  D F  ++L++ C
Sbjct: 323 EAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK-SVELFNQMRAELMAIDQFALATLISGC 381

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK----------------------- 310
                  LGRQ+H L +K   +  ++V+ SL+ +YAK                       
Sbjct: 382 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWT 441

Query: 311 --------NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFC 361
                    GNI  A   FDGM  +N ++WN M+  + Q+G   + +K+   ML Q    
Sbjct: 442 SMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVT 501

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD VT  ++   C  +  +    Q+  + +K G+   +S+ NA I  YSKCG I+ A + 
Sbjct: 502 PDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKL 561

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   D+V+W ++I  Y+ HG+ K++ + F+ MLS   +PD I+++ VLS CSH GLV
Sbjct: 562 FDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLV 621

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG  YF++M   + I P  EH++C+ DLLGR G L EA DL+  MP++P ++  GA + 
Sbjct: 622 QEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLS 681

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           ACK+HG+  LA+ AA+ + EL+     +Y L++ +Y+      D A++RK+MRD    K 
Sbjct: 682 ACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKN 741

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAV 627
           PG SW+E+  ++H F + D SHPQ +
Sbjct: 742 PGYSWMEVENKVHVFKADDVSHPQVI 767



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/517 (27%), Positives = 241/517 (46%), Gaps = 90/517 (17%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM--------- 117
           + AL+     G L   + LH  ++ +GL + + LQN +LH Y  C A  D          
Sbjct: 8   ADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIK 67

Query: 118 -----------------------EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFR-RM 153
                                  E+LFD M  R++ +WNTL+SG          YF+ R 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSG----------YFQARR 117

Query: 154 LLDNVRL------------DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            LD +              +  TF  ++++C      E+  +L     K  F  +  V +
Sbjct: 118 FLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET 177

Query: 202 ALVDLYGKCGFVEDARRVFDE-----VLC--------------------------RDLVL 230
           ALVD++ +CG+V+ A R+F +     + C                          RD+V 
Sbjct: 178 ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVS 237

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN+M++  + +     A+ +   M  +G++ D  T++S + +C  L S   G+Q+H  VI
Sbjct: 238 WNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI 297

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           +    +D  VA++L+++YAK G+  +A RVF+ +  +N VSW  ++ G  Q     ++V+
Sbjct: 298 RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVE 357

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L   M       D+  LA+++S C +    C  RQ+H+  +K+G    + + N+LI+ Y+
Sbjct: 358 LFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYA 417

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  A   F S+ E D+V+WTS+I AY+  G   ++ E F+ M +     ++I +  
Sbjct: 418 KCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAITWNA 473

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           +L A    G   +GL+ ++ M+S   + PD   Y  L
Sbjct: 474 MLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 219/466 (46%), Gaps = 45/466 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ +L   A+   L  GKQLH+ +++        + + ++ +Y KC +F + +++F+ ++
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN V+W  LI G +   C       F +M  + + +D     +L+  C    D+ +GR+
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ 392

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL--- 240
           LHS  LK G      VS++L+ LY KCG +++A  VF  +  RD+V W  M++ Y+    
Sbjct: 393 LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGN 452

Query: 241 --------------------NCLG---------DGAIAVFNLMRLEGMKGDYFTFSSLVN 271
                                 LG         DG      ++  + +  D+ T+ +L  
Sbjct: 453 IIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFR 512

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
            C  +G++KLG QI G  +K    L+V VA + + MY+K G I +A ++FD +  K+VVS
Sbjct: 513 GCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS 572

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR-----QV 386
           WN M+ G+ Q+G G++A K   DML     PD ++  ++LS C    +  E +       
Sbjct: 573 WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMT 632

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGL 445
             + I  G++ F    + +++   + G +  A      +  +P    W +++ A   HG 
Sbjct: 633 RVHGISPGLEHF----SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG- 687

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           + E  E+  K +     PDS +++ +    S  G   +  +   LM
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 733



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GS 424
            LA  L SCGS       R +H   +  G+ + + ++N L++AY  CG+++ A +     
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +KEP+++T   ++  YA  G   ++ E+F++M     R D  ++  ++S         +G
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRM----PRRDVASWNTLMSGYFQARRFLDG 121

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           L  F  M      LP++  + C+    G +G
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 319/554 (57%), Gaps = 5/554 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K LH+HI+K G        ++++  Y+KC    +  KLFDEM  R+IVTWN++IS  ++ 
Sbjct: 21  KSLHTHILKSGSLFSF-FGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 143 GGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFV 199
           G        +  ML + V  D  TF+++ +A  +      G++ H   + +GF + + FV
Sbjct: 80  GKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFV 139

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ +VD+Y K G ++DAR VFD VL +D+VL+  ++  Y  + L   A+ VF  M    +
Sbjct: 140 ATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRI 199

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K + +T +S++ SCG LG    G+ IHGLV+K   +  V   TSL+ MY+K   ++D+ +
Sbjct: 200 KPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIK 259

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +   + V+W + +VG  QNG    A+ + R+M++ S  P+  TL+SIL +C SL++
Sbjct: 260 VFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAM 319

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                Q+HA  +K GV     ++ ALI+ Y KCG++  A   F S+ E D+V+  ++I A
Sbjct: 320 LEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYA 379

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA +G   E++E+FE++    + P+ + F+ +L AC++ GLV EG + F+L+ +++ I  
Sbjct: 380 YAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIEL 439

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             +HYTC+ DLLGR     EA  +L      P        + ACK+HG + +A+   +K+
Sbjct: 440 TRDHYTCMIDLLGRAKRFEEA-TMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKM 498

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+  P     + L++N+YAS   W +V  ++   RD    K P  SW++I  E+HTF++ 
Sbjct: 499 LDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAG 558

Query: 620 DRSHPQAVHMYAML 633
           D SHP+A  +  ML
Sbjct: 559 DLSHPRAHEISEML 572



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 180/321 (56%), Gaps = 2/321 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + SL+  C     +   + LH+ ILK G  L  F    L+D Y KC  + +AR++FDE+ 
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R +V WN M+S +        AI +++ M  EG+  D +TFS++  +   +G S+ G++
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 285 IHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            HGL +   F++ D  VAT +VDMYAK G + DA  VFD +  K+VV +  ++VG+ Q+G
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHG 182

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+++  DM+     P+E TLAS+L SCG+L      + +H   +K G+++ ++ + 
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQT 242

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +L+  YSKC  +  +++ F S+     VTWTS I     +G  + ++ +F +M+  ++ P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISP 302

Query: 464 DSIAFLEVLSACSHGGLVSEG 484
           +      +L ACS   ++  G
Sbjct: 303 NHFTLSSILHACSSLAMLEAG 323



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
            G L  GK +H  ++K GL + ++ Q  +L +Y KC   +D  K+F+ +   + VTW + 
Sbjct: 216 LGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSF 275

Query: 136 ISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G++  G        FR M+  ++  +H T +S+L AC     +E G ++H+  +K+G 
Sbjct: 276 IVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGV 335

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             N FV +AL+ LYGKCG VE AR VFD +   D+V  N M+  YA N  G  A+ +F  
Sbjct: 336 DGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFER 395

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI-KQSFDLDVLVATSLVDMYAKNG 312
           ++  G++ +  TF S++ +C   G  + G QI  L+    S +L     T ++D+  +  
Sbjct: 396 LKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAK 455

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE----VTLA 368
             ++A  + +     +V+ W T++     +G+   A K ++ ML  +  P +    + L 
Sbjct: 456 RFEEATMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQA--PRDGGTHILLT 513

Query: 369 SILSSCG 375
           +I +S G
Sbjct: 514 NIYASAG 520



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H   S  L   +    L+ G+Q+H+  +KLG+     +   ++H+Y KC   +    +FD
Sbjct: 304 HFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFD 363

Query: 123 EMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +   +IV+ NT+I        G      F R+    +  + +TF S+L AC  A  +E 
Sbjct: 364 SLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEE 423

Query: 181 GRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           G ++ S I       L     + ++DL G+    E+A  + +E    D++ W  +++ 
Sbjct: 424 GCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNA 481


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 300/537 (55%), Gaps = 24/537 (4%)

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
           ++ K  +   +LFD++  R++++WN++ISG ++ G        +++M+   + +D  T  
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L  C  +  + +G+ +HS  +K  F      S+ L+D+Y KCG ++ A RVF+++  R
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W  M++ Y  +   DGAI +   M  EG+K D    +S++++C   GS   G+ +H
Sbjct: 316 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 375

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             +   +   ++ V  +L+DMYAK G+++ A  VF  M  K+++SWNTMV          
Sbjct: 376 DYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV---------- 425

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
                      G   PD  T+A IL +C SLS     +++H Y ++NG  +   + NAL+
Sbjct: 426 -----------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALV 474

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KCG +  A   F  +   DLV+WT +I  Y  HG   E+I  F +M    + PD +
Sbjct: 475 DLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEV 534

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
           +F+ +L ACSH GL+ +G R+F +M +D++I P  EHY C+ DLL R G L +AY  + +
Sbjct: 535 SFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIET 594

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
           +PI P +   GA +  C+++  I LA+  AE++ ELEP     Y L++N+YA      +V
Sbjct: 595 LPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEV 654

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS-SDRSHPQAVHMYAMLCTVFGLMEE 642
            R+R+ +      K PGCSWIEI G ++ FVS ++ SHP +  + ++L  +   M+E
Sbjct: 655 KRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 711



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 207/408 (50%), Gaps = 35/408 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L  GK +HS  +K     +++  N +L +Y KC   D   ++F++M  RN+V+W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++I+G    G         ++M  + V+LD +   S+L AC ++  ++ G+ +H +I   
Sbjct: 322 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               N FV +AL+D+Y KCG +E A  VF  ++ +D++ WN MV                
Sbjct: 382 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG--------------- 426

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
                  +K D  T + ++ +C +L + + G++IHG +++  +  D  VA +LVD+Y K 
Sbjct: 427 ------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +  A  +FD + +K++VSW  M+ G+G +G G EA+    +M      PDEV+  SIL
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EP 428
            +C S S   E      Y +KN       +E+   +++  S+ G+++ A +   ++   P
Sbjct: 541 YAC-SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAP 599

Query: 429 DLVTWTSII-GAYAFHGLSKESIEVFEKMLSHA--VRPDSIAFLEVLS 473
           D   W +++ G   +H      IE+ EK+      + P++  +  +L+
Sbjct: 600 DATIWGALLCGCRIYH-----DIELAEKVAERVFELEPENTGYYVLLA 642



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 192/427 (44%), Gaps = 87/427 (20%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L+  T+ S+L+ C     +  G+++HS I     G++  +   LV  Y  CG +++ RRV
Sbjct: 97  LETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKG---------------- 261
           FD +  +++ LWN MVS YA   +GD   +I +F +M  +G++G                
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAK--IGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDR 214

Query: 262 -----------------------------------DYFTFSSLVNSCGTLGSSKLGRQIH 286
                                              D  T  S++  C   G+  LG+ +H
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
            L IK SF+  +  + +L+DMY+K G++D A RVF+ M  +NVVSW +M+ G+ ++G   
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSD 334

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
            A+ LL+ M +     D V + SIL +C         + VH Y   N + + L + NAL+
Sbjct: 335 GAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALM 394

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y+KCGS+ GA   F ++   D+++W +++G                      ++PDS 
Sbjct: 395 DMYAKCGSMEGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSR 433

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMI-----SDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
               +L AC+    +  G      ++     SD H+         L DL  + G+L  A 
Sbjct: 434 TMACILPACASLSALERGKEIHGYILRNGYSSDRHVA------NALVDLYVKCGVLGLAR 487

Query: 522 DLLASMP 528
            L   +P
Sbjct: 488 LLFDMIP 494



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 142/272 (52%), Gaps = 23/272 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L  GK +H +I    + + L + N ++ +Y KC + +    +F  M V++I
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDI 418

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           ++WNT++       G + P            D  T   +L AC     +E G+ +H +IL
Sbjct: 419 ISWNTMV-------GELKP------------DSRTMACILPACASLSALERGKEIHGYIL 459

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           + G+  +  V++ALVDLY KCG +  AR +FD +  +DLV W VM++ Y ++  G+ AIA
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDM 307
            FN MR  G++ D  +F S++ +C   G  + G +    ++K  F+++  +     +VD+
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDL 578

Query: 308 YAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
            ++ GN+  A +  + +  A +   W  ++ G
Sbjct: 579 LSRTGNLSKAYKFIETLPIAPDATIWGALLCG 610


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 305/559 (54%), Gaps = 3/559 (0%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + HS Y    +   K   L  G+ +H  + +       S++N +L +Y  C +  D++K+
Sbjct: 86  TPHS-YQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQKV 144

Query: 121 FDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FDEM ++N+V+W  +IS     G        F  M    +R +   + SLL++C+    +
Sbjct: 145 FDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFL 204

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           E+G+++HS +++     N  V +A+ ++Y +CG++E A+ VFD +  ++ V W  ++  Y
Sbjct: 205 ELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGY 264

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
                 + A+ +F  M +EG++ D F FS ++  C  L    +G+QIH  ++K   + +V
Sbjct: 265 TQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEV 324

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V T LVD Y K G+I+ A R F  ++  N VSW+ ++ GF Q+G   + +K+   +   
Sbjct: 325 SVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSE 384

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               +     S+  +C + +      Q H  AIK G+ ++L  E+A++  YSKCG +  A
Sbjct: 385 GVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYA 444

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F S+ EPD V WT+II  YA+HG + E++  F +M S+ VRP+++ F+ VL+ACSH 
Sbjct: 445 RRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHS 504

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLV+E  +Y   M  DY + P  +HY C+ D   R GLL EA +L+  MP EP + +  +
Sbjct: 505 GLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKS 564

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +G C  H  + L K AAE L  L+P     Y L+ N+Y++   W +   +RK+M +   
Sbjct: 565 LLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAEREL 624

Query: 599 HKVPGCSWIEIAGEIHTFV 617
            K   CSWI + G++H  V
Sbjct: 625 KKEVSCSWISVKGQVHRPV 643


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 175/465 (37%), Positives = 273/465 (58%), Gaps = 1/465 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   +N+LL+ C     +  GR +H+ IL+  F  +  + + L+++Y KCG +E+AR+VF
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           +++  RD V W  ++S Y+ +     A+  FN M   G   + FT SS++ +        
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G Q+HG  +K  FD +V V ++L+D+Y + G +DDA  VFD + ++N VSWN ++ G  
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           +     +A++L + ML+  F P   + AS+  +C S     + + VHAY IK+G +    
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
             N L++ Y+K GSI  A + F  + + D+V+W S++ AYA HG  KE++  FE+M    
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           +RP+ I+FL VL+ACSH GL+ EG  Y+ LM  D  I+P++ HY  + DLLGR G L  A
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
              +  MPIEP +    A + AC++H +  L  +AAE + EL+P  P  + ++ N+YAS 
Sbjct: 418 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 477

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
             W D AR+RK M+++   K P CSW+EI   IH FV++D  HPQ
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 522



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 206/382 (53%), Gaps = 3/382 (0%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           FY+  LK    F  L QG+ +H+HI++    + + + N +L++Y KC + ++  K+F++M
Sbjct: 62  FYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKM 121

Query: 125 RVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R+ VTW TLISG        +   +F +ML      +  T +S+++A         G 
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +LH F +K GF  N  V SAL+DLY + G ++DA+ VFD +  R+ V WN +++ +A   
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ +F  M  +G +  +F+++SL  +C + G  + G+ +H  +IK    L      
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK+G+I DA ++FD +  ++VVSWN+++  + Q+G G+EAV    +M +    P
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRP 361

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E++  S+L++C    +  E    +    K+G+         +++   + G +  AL+  
Sbjct: 362 NEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 423 GSVK-EPDLVTWTSIIGAYAFH 443
             +  EP    W +++ A   H
Sbjct: 422 EEMPIEPTAAIWKALLNACRMH 443



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 185/397 (46%), Gaps = 38/397 (9%)

Query: 31  TTTITNAQKHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQL 85
           TT I+   +HDR        +  LR   + +E T       S  +K +A       G QL
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT------LSSVIKAAAAERRGCCGHQL 183

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG- 144
           H   +K G  + + + + +L +Y +    DD + +FD +  RN V+WN LI+G     G 
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 145 -NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
                 F+ ML D  R  H ++ SL  AC     +E G+ +H++++K G  L  F  + L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D+Y K G + DAR++FD +  RD+V WN +++ YA +  G  A+  F  MR  G++ + 
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            +F S++ +C   G    G   + L+ K     +     ++VD+  + G+++ A R  + 
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 324 MTAKNVVS-WNTMVVGFGQNGDGREAVKLLRDMLQGSFC--------PDE----VTLASI 370
           M  +   + W  ++           A ++ ++   G++         PD+    V L +I
Sbjct: 424 MPIEPTAAIWKALL----------NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473

Query: 371 LSSCGSLSISCETRQ--VHAYAIKNGVQAFLSIENAL 405
            +S G  + +   R+    +   K    +++ IENA+
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/591 (31%), Positives = 322/591 (54%), Gaps = 7/591 (1%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ G+ +H  ++KLGL + + + N +L +Y +    +D E +F  M  R++++WN++++ 
Sbjct: 414  LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 473

Query: 139  IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             +  G   +       +L     ++H+TF S L AC   + +   + +H+ I+  GF   
Sbjct: 474  YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 533

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
              V +ALV +YGK G + +A++V   +   D V WN ++  +A N   + A+  + L+R 
Sbjct: 534  LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE 593

Query: 257  EGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            +G+  +Y T  S++ +C       K G  IH  ++   F+ D  V  SL+ MYAK G+++
Sbjct: 594  KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 653

Query: 316  DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
             +  +FDG+  K+ ++WN MV     +G G EA+K+  +M       D+ + +  L++  
Sbjct: 654  SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 713

Query: 376  SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            +L++  E +Q+H   IK G ++ L + NA ++ Y KCG +   L+          ++W  
Sbjct: 714  NLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNI 773

Query: 436  IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
            +I A+A HG  +++ E F +ML    +PD + F+ +LSAC+HGGLV EGL Y++ M  ++
Sbjct: 774  LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREF 833

Query: 496  HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
             + P  EH  C+ DLLGR G L  A   +  MP+ P      + + AC++HG++ LA+  
Sbjct: 834  GVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKT 893

Query: 556  AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            AE LLEL+PS    Y L SNV A+   W DV  LRK M  N   K P CSW+++  ++H+
Sbjct: 894  AEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHS 953

Query: 616  FVSSDRSHPQAVHMYAMLCTVFGLMEE----NNVSGHCNVLDKEMDECTLW 662
            F   ++ HPQA  + A L  +  + +E     + S   + +D+E  E  LW
Sbjct: 954  FGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLW 1004



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 222/398 (55%), Gaps = 2/398 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G Q+H  ++K G+   + +   ++H Y       + +KLF+EM   N+V+W +L+ G  
Sbjct: 214 EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 273

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
           + G  G V   ++RM  + V  +  TF ++  +C   +D  +G ++   I++ GF  +  
Sbjct: 274 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 333

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+++L+ ++     VE+A  VFD +   D++ WN M+S YA + L   ++  F+ MR   
Sbjct: 334 VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 393

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            + +  T SSL++ C ++ + K GR IHGLV+K   D +V +  +L+ +Y++ G  +DA 
Sbjct: 394 NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 453

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF  MT ++++SWN+M+  + Q+G   + +K+L ++LQ     + VT AS L++C +  
Sbjct: 454 LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPE 513

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              E++ VHA  I  G   FL + NAL+  Y K G +  A +   ++ +PD VTW ++IG
Sbjct: 514 CLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIG 573

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            +A +    E+++ ++ +    +  + I  + VL ACS
Sbjct: 574 GHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 257/502 (51%), Gaps = 15/502 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK LH+  +   +   +   N ++++Y K    +    +FDEMR RN  +W+T++SG + 
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-EVGRRLHSFILKVGFGLNCF 198
            G        F +M    V  +     SL+ AC ++  + + G ++H F++K G   + +
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V +ALV  YG  G V +A+++F+E+   ++V W  ++  Y+ +      + V+  MR EG
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           + G+  TF+++ +SCG L    LG Q+ G +I+  F+  V VA SL+ M++   ++++AC
Sbjct: 293 VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 352

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VFD M   +++SWN M+  +  +G  RE+++    M       +  TL+S+LS C S+ 
Sbjct: 353 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 412

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                R +H   +K G+ + + I N L+  YS+ G    A   F ++ E DL++W S++ 
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 472

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI----SD 494
            Y   G   + +++  ++L      + + F   L+ACS+   + E      L+I     D
Sbjct: 473 CYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHD 532

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           + I+ ++     L  + G++G+++EA  +L +MP +P   T  A IG    +     A  
Sbjct: 533 FLIVGNA-----LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAV- 585

Query: 555 AAEKLLELEPSKPVNYALVSNV 576
            A KL+  E   P NY  + +V
Sbjct: 586 KAYKLIR-EKGIPANYITMVSV 606



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 106/199 (53%), Gaps = 1/199 (0%)

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           S   G+ +H   I  S +L +    +L++MY+K GNI+ A  VFD M  +N  SW+TM+ 
Sbjct: 109 SQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLS 168

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG-SLSISCETRQVHAYAIKNGVQ 396
           G+ + G   EAV L   M      P+   +AS++++C  S  ++ E  QVH + +K G+ 
Sbjct: 169 GYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGIL 228

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             + +  AL++ Y   G +  A + F  + + ++V+WTS++  Y+  G   E + V+++M
Sbjct: 229 GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 288

Query: 457 LSHAVRPDSIAFLEVLSAC 475
               V  +   F  V S+C
Sbjct: 289 RQEGVSGNQNTFATVTSSC 307


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 309/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G LQ+GKQLHS+++K G+      +  +L +YVKC   +    +F+     N+
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G I+        F +M    +  +  T+  +LR C     IE+G ++HS 
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K GF  + +VS  L+D+Y K G ++ AR++ + +  RD+V W  M++ Y  +   + A
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +A F  M+  G+  D    +S  ++C  + + + G QIH  V    +  D+ +  +LV++
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNL 491

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G  ++A  +F  +  K+ ++WN ++ GFGQ+   ++A+ +   M Q     +  T 
Sbjct: 492 YARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTF 551

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  +L+   + +QVH  A+K G  +   + NALI+ Y KCGSI  A   F  +  
Sbjct: 552 ISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL 611

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W +II + + HG   E++++F++M    ++P+ + F+ VL+ACSH GLV EGL Y
Sbjct: 612 RNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSY 671

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M + Y + P  +HY C+ D+LGR G L  A   +  MPI   +      + ACKVH 
Sbjct: 672 FKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHK 731

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + + AA+ LLELEP    +Y L+SN YA    W +  ++RKMM+D    K PG SWI
Sbjct: 732 NIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWI 791

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F   DR HP +  +Y  L
Sbjct: 792 EVKNAVHAFFVGDRLHPLSDQIYKFL 817



 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 245/483 (50%), Gaps = 4/483 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K     QG+ +H+ + K   C++  + N ++ +Y+   +F   E++F +M  
Sbjct: 148 SSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + VT+NTLISG   CG        F  M L  +R D +T  SLL AC    D++ G++L
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS++LK G   +     +L+DLY KCG +E A  +F+     ++VLWN+M+  Y      
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             +  +F  M+  G+  + FT+  ++ +C   G  +LG QIH L IK  F+ D+ V+  L
Sbjct: 328 AKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K G +D A ++ + +  ++VVSW +M+ G+ Q+    EA+   ++M      PD 
Sbjct: 388 IDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDN 447

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           + LAS  S+C  +    +  Q+HA    +G  A +SI N L+N Y++CG    A   F  
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFRE 507

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++  D +TW  +I  +    L K+++ VF KM     + +   F+  +SA ++   + +G
Sbjct: 508 IEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQG 567

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            +     +   H   ++E    L  L G+ G + +A  + + M +     +    I +C 
Sbjct: 568 KQVHGRAVKTGHT-SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV-SWNTIITSCS 625

Query: 545 VHG 547
            HG
Sbjct: 626 QHG 628



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 225/444 (50%), Gaps = 5/444 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           ++H+  +  GL     + N ++ +Y K        ++F E+  R+ V+W  ++SG    G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 144 GNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                +  + +M    V       +S+L AC +      GR +H+ + K  F    FV +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+ LY   G  + A RVF ++L  D V +N ++S +A    G+ A+ +F+ M+L G++ 
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T +SL+ +C ++G  + G+Q+H  ++K     D +   SL+D+Y K G+I+ A  +F
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +     NVV WN M+V +GQ  D  ++ ++   M      P++ T   IL +C       
Sbjct: 304 NLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIE 363

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+ +IKNG ++ + +   LI+ YSK G +  A +    +++ D+V+WTS+I  Y 
Sbjct: 364 LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYV 423

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   +E++  F++M    V PD+I      SAC+    + +GL+ +  + +S Y    D
Sbjct: 424 QHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AAD 481

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLL 524
              +  L +L  R G   EA+ L 
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLF 505



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 173/347 (49%), Gaps = 15/347 (4%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H     Y   L+     G ++ G+Q+HS  +K G  + + +   ++ +Y K    D   K
Sbjct: 343 HPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARK 402

Query: 120 LFDEMRVRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           + + +  R++V+W ++I+G +    C   +   F+ M    V  D+I   S   AC    
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT-FKEMQDCGVWPDNIGLASAASACAGIK 461

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +  G ++H+ +   G+  +  + + LV+LY +CG  E+A  +F E+  +D + WN ++S
Sbjct: 462 AMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLIS 521

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            +  + L   A+ VF  M   G K + FTF S +++   L   K G+Q+HG  +K     
Sbjct: 522 GFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTS 581

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  VA +L+ +Y K G+I+DA  +F  M+ +N VSWNT++    Q+G G EA+ L   M 
Sbjct: 582 ETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMK 641

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           Q    P++VT   +L++C            H   ++ G+  F S+ N
Sbjct: 642 QEGLKPNDVTFIGVLAACS-----------HVGLVEEGLSYFKSMSN 677



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  A+   A    ++QGKQ+H   +K G  ++  + N ++ +Y KC + +D + +F EM 
Sbjct: 551 FISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMS 610

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN V+WNT+I+     G  +     F +M  + ++ + +TF  +L AC     +E G  
Sbjct: 611 LRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLS 670

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYA 239
               +  V +GLN      + +VD+ G+ G ++ ARR  DE+ +  + ++W  ++S C  
Sbjct: 671 YFKSMSNV-YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKV 729

Query: 240 LNCLGDGAIAVFNLMRLE 257
              +  G +A  +L+ LE
Sbjct: 730 HKNIEIGELAAKHLLELE 747


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 317/591 (53%), Gaps = 37/591 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           + Q KQ+HS  +  GL +   +  Q++    K     DME    +FD M   N   WN +
Sbjct: 32  MAQLKQIHSQTICTGLISNPIVPAQIIAFCCK-HELGDMEYARMVFDTMPGPNHFVWNNM 90

Query: 136 ISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G   + C  +    +  ML   V  D  T+  LL+   +   ++ GR LH  I+K+GF
Sbjct: 91  IKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGF 150

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             N FV +AL+ LY   G V  AR VFD     D+V WNVM+S Y  +   D ++ +F+ 
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M    +     T  S++++C  L    +G+++H  V     +   ++  +L+DMYA  G+
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGD 270

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGF---GQNG---------------------DG---- 345
           +D A  +FD M +++V+SW  +V GF   GQ G                     DG    
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330

Query: 346 ---REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
              +E + L R+M   +  PDE T+ SIL++C  L        + AY  KN ++    + 
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG 390

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NALI+ Y  CG++  A++ F ++   D ++WT++I   A +G  +E++++F +ML  ++ 
Sbjct: 391 NALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT 450

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD +  + VL AC+H G+V +G ++F  M + + I P+  HY C+ DLLGR G L EA++
Sbjct: 451 PDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHE 510

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
           ++ +MP++P S   G+ +GAC+VH    +A+ AA+++LELEP     Y L+ N+YA+   
Sbjct: 511 VIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNR 570

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           W  +  +RK+M D    K PGCS IE+ G +H FV+ D+ HPQ+  +Y+ L
Sbjct: 571 WEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKL 621



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 35/302 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   +K   L  GK++H ++  L +     L+N ++ +Y  C   D    +FD M+ R++
Sbjct: 227 LSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDV 286

Query: 130 VTWNTLISGIINCG---------------------------------GNVTPYFRRMLLD 156
           ++W  +++G  N G                                   V   FR M   
Sbjct: 287 ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAA 346

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N++ D  T  S+L AC     +E+G  + ++I K    ++ FV +AL+D+Y  CG VE A
Sbjct: 347 NIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKA 406

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
            R+F+ +  RD + W  ++   A+N  G+ A+ +F+ M    +  D  T   ++ +C   
Sbjct: 407 IRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHS 466

Query: 277 GSSKLGRQIHG-LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNT 334
           G    G++    +  +   + +V     +VD+  + G++ +A  V   M  K N + W +
Sbjct: 467 GMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGS 526

Query: 335 MV 336
           ++
Sbjct: 527 LL 528


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 203/582 (34%), Positives = 317/582 (54%), Gaps = 30/582 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A  G+++ G+Q+HS I+K+G    +   + +L +Y KC+  +D  ++F  + 
Sbjct: 103 FGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSIN 162

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRR--MLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN VTWN LISG  + G   T ++    M L+ V +D  TF  LL      D  ++  +
Sbjct: 163 IRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQ 222

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           +H+ I+K G   +  V +A++  Y +CG +EDA RVFD  +  RDLV WN M++ Y +N 
Sbjct: 223 VHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNN 282

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A  +F  M++ G + D +T++S++++         G+ +HGLVIK+  +  V ++ 
Sbjct: 283 QEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISN 342

Query: 303 SLVDMYAKN--GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           SL+ MY K+   ++D+A  +F+ +  K+ VSWN+++ GF Q+G   +A+K   +M     
Sbjct: 343 SLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYV 402

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D    +++L SC  L+     +QVH                        CG I  A +
Sbjct: 403 VIDHYAFSAVLRSCSDLATLQLGQQVHVL----------------------CGVIEDARK 440

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F +  +   + W S+I  YA HG  K ++++F  M    V+ D I F+ VL+ACSH GL
Sbjct: 441 SFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGL 500

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EG  +   M SDY I P  EHY C+ DLLGR G L EA  L+ +MP EP +      +
Sbjct: 501 VEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 560

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC+  G I LA   A  LLELEP +   Y L+S+++   R W + A ++++M++    K
Sbjct: 561 GACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKK 620

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           VPG SWIE+  E+H+F + DRSHP    +Y  L     LMEE
Sbjct: 621 VPGWSWIEVKNEVHSFNAEDRSHPNCEEIYLRLGD---LMEE 659



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%)

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L IK      +  A +++  YAK G I  A ++FD  + ++ VSWNTM+ G    G+ 
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNF 81

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             A++ L+ M +  F  D  +  SIL     +      +QVH+  +K G +  +   +AL
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSAL 141

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           ++ Y+KC  +  A + F S+   + VTW ++I  YA  G
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVG 180


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/591 (31%), Positives = 322/591 (54%), Gaps = 7/591 (1%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ G+ +H  ++KLGL + + + N +L +Y +    +D E +F  M  R++++WN++++ 
Sbjct: 1064 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 1123

Query: 139  IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             +  G   +       +L     ++H+TF S L AC   + +   + +H+ I+  GF   
Sbjct: 1124 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 1183

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
              V +ALV +YGK G + +A++V   +   D V WN ++  +A N   + A+  + L+R 
Sbjct: 1184 LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE 1243

Query: 257  EGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            +G+  +Y T  S++ +C       K G  IH  ++   F+ D  V  SL+ MYAK G+++
Sbjct: 1244 KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 1303

Query: 316  DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
             +  +FDG+  K+ ++WN MV     +G G EA+K+  +M       D+ + +  L++  
Sbjct: 1304 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 1363

Query: 376  SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            +L++  E +Q+H   IK G ++ L + NA ++ Y KCG +   L+          ++W  
Sbjct: 1364 NLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNI 1423

Query: 436  IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
            +I A+A HG  +++ E F +ML    +PD + F+ +LSAC+HGGLV EGL Y++ M  ++
Sbjct: 1424 LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREF 1483

Query: 496  HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
             + P  EH  C+ DLLGR G L  A   +  MP+ P      + + AC++HG++ LA+  
Sbjct: 1484 GVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKT 1543

Query: 556  AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            AE LLEL+PS    Y L SNV A+   W DV  LRK M  N   K P CSW+++  ++H+
Sbjct: 1544 AEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHS 1603

Query: 616  FVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            F   ++ HPQA  + A L  +  + +E     + S   + +D+E  E  LW
Sbjct: 1604 FGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLW 1654



 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 302/548 (55%), Gaps = 3/548 (0%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y + L++       +QG  +H+H++  G  + L L  +++  YVK         +FD 
Sbjct: 31  SLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDG 90

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  R++V+W  ++SG    G     +  F  M    V+ +  T+ S LRAC     +++G
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMG 150

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++   I K  F  N FV SALVD + KCG +EDA  +F  ++ RD+V WN M+  YA+ 
Sbjct: 151 IQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQ 210

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              D +  +F  M   G+  D +T  S++ +    G   +  QIHG++ +  +    +V 
Sbjct: 211 GFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVT 270

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG-DGREAVKLLRDMLQGSF 360
             L++ YAKNG++  A  +  GM  K++ S   ++ G+   G    +A+ L ++M Q + 
Sbjct: 271 GLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNI 330

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D+V L S+L+ C +L+      Q+HA+A+K      +++ NALI+ Y+K G I  A +
Sbjct: 331 GMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKR 390

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  ++E ++++WTS+I  YA HG    ++ +++KM S   +P+ + FL +L ACSH GL
Sbjct: 391 AFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGL 450

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
            +EG   FN M++ Y+I P +EHY+C+ DL  R GLL EAY+LL  + I+  +   GA +
Sbjct: 451 TAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAIL 510

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GA  ++G + L K AA  L  ++P   VNY +++++Y++   W D  ++RK+M +    K
Sbjct: 511 GASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKK 570

Query: 601 VPGCSWIE 608
             G S+ +
Sbjct: 571 NAGYSFFQ 578



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 222/398 (55%), Gaps = 2/398 (0%)

Query: 81   QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
            +G Q+H  ++K G+   + +   ++H Y       + +KLF+EM   N+V+W +L+ G  
Sbjct: 864  EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 923

Query: 141  NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            + G  G V   ++RM  + V  +  TF ++  +C   +D  +G ++   I++ GF  +  
Sbjct: 924  DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 983

Query: 199  VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            V+++L+ ++     VE+A  VFD +   D++ WN M+S YA + L   ++  F+ MR   
Sbjct: 984  VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 1043

Query: 259  MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
             + +  T SSL++ C ++ + K GR IHGLV+K   D +V +  +L+ +Y++ G  +DA 
Sbjct: 1044 NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 1103

Query: 319  RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
             VF  MT ++++SWN+M+  + Q+G   + +K+L ++LQ     + VT AS L++C +  
Sbjct: 1104 LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPE 1163

Query: 379  ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
               E++ VHA  I  G   FL + NAL+  Y K G +  A +   ++ +PD VTW ++IG
Sbjct: 1164 CLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIG 1223

Query: 439  AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             +A +    E+++ ++ +    +  + I  + VL ACS
Sbjct: 1224 GHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 257/502 (51%), Gaps = 15/502 (2%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            GK LH+  +   +   +   N ++++Y K    +    +FDEMR RN  +W+T++SG + 
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 142  CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-EVGRRLHSFILKVGFGLNCF 198
             G        F +M    V  +     SL+ AC ++  + + G ++H F++K G   + +
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 199  VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            V +ALV  YG  G V +A+++F+E+   ++V W  ++  Y+ +      + V+  MR EG
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 259  MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            + G+  TF+++ +SCG L    LG Q+ G +I+  F+  V VA SL+ M++   ++++AC
Sbjct: 943  VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 1002

Query: 319  RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
             VFD M   +++SWN M+  +  +G  RE+++    M       +  TL+S+LS C S+ 
Sbjct: 1003 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 1062

Query: 379  ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                 R +H   +K G+ + + I N L+  YS+ G    A   F ++ E DL++W S++ 
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 1122

Query: 439  AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI----SD 494
             Y   G   + +++  ++L      + + F   L+ACS+   + E      L+I     D
Sbjct: 1123 CYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHD 1182

Query: 495  YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
            + I+ ++     L  + G++G+++EA  +L +MP +P   T  A IG    +     A  
Sbjct: 1183 FLIVGNA-----LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAV- 1235

Query: 555  AAEKLLELEPSKPVNYALVSNV 576
             A KL+  E   P NY  + +V
Sbjct: 1236 KAYKLIR-EKGIPANYITMVSV 1256



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 211/436 (48%), Gaps = 4/436 (0%)

Query: 144 GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
           G +    + +  +  RLD   +  +L+ C+     + G  +H+ ++  GFG +  +++ L
Sbjct: 12  GRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKL 71

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +  Y K G V  AR VFD +  R +V W  MVS Y+ N   + A  +F+ MR  G+K + 
Sbjct: 72  IIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQ 131

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           FT+ S + +C +L    +G Q+ G + K  F  ++ V ++LVD ++K G ++DA  +F  
Sbjct: 132 FTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGT 191

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  ++VVSWN M+ G+   G   ++  + R ML+G   PD  TL S+L +          
Sbjct: 192 MMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIA 251

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
            Q+H    + G  ++  +   LINAY+K GS+  A      + + DL + T++I  YA  
Sbjct: 252 NQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHE 311

Query: 444 GL-SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           G+ S +++++F++M    +  D +    +L+ C++    + G +     +  Y    D  
Sbjct: 312 GIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALK-YQPSYDVA 370

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
               L D+  + G + +A      M  E    +  + I     HG  G    +  K +E 
Sbjct: 371 MGNALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKHG-YGHMAVSLYKKMES 428

Query: 563 EPSKPVNYALVSNVYA 578
           +  KP +   +S ++A
Sbjct: 429 KGFKPNDVTFLSLLFA 444



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 106/199 (53%), Gaps = 1/199 (0%)

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           S   G+ +H   I  S +L +    +L++MY+K GNI+ A  VFD M  +N  SW+TM+ 
Sbjct: 759 SQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLS 818

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG-SLSISCETRQVHAYAIKNGVQ 396
           G+ + G   EAV L   M      P+   +AS++++C  S  ++ E  QVH + +K G+ 
Sbjct: 819 GYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGIL 878

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             + +  AL++ Y   G +  A + F  + + ++V+WTS++  Y+  G   E + V+++M
Sbjct: 879 GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 938

Query: 457 LSHAVRPDSIAFLEVLSAC 475
               V  +   F  V S+C
Sbjct: 939 RQEGVSGNQNTFATVTSSC 957


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 195/600 (32%), Positives = 318/600 (53%), Gaps = 48/600 (8%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q +QLH+ ++K    + L   + +L +Y       D  +LF+ +     + W ++I    
Sbjct: 24  QAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 141 NCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           + G    P+     F  ML   +  DH  F S+L++C    D+ +G  LH +I++VG   
Sbjct: 83  SHG---LPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDF 139

Query: 196 NCFVSSALVDLYGKCGFVEDARR-------VFDEVLCR---------------------- 226
           + +  +AL+++Y K  F+E++ R       VFDE+  R                      
Sbjct: 140 DLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMM 199

Query: 227 ---DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              DLV WN +++  A N L +  + +   M    +K D FT SS++           G+
Sbjct: 200 PEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGK 259

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IHG  I+Q  D D+ VA+SL+DMYAK   + D+CRVF  +T ++ +SWN+++ G  QNG
Sbjct: 260 EIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNG 319

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              E ++  R ML     P   + +SI+ +C  L+     +Q+H Y  +NG    + I +
Sbjct: 320 LFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIAS 379

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +L++ Y+KCG+I  A Q F  ++  D+V+WT++I   A HG + ++IE+FE+M +  ++ 
Sbjct: 380 SLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA 439

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
                  VL+ACSHGGLV E  +YFN M  D+ I P  EHY  ++DLLGR G L EAYD 
Sbjct: 440 -------VLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDF 492

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  M I P        + AC+VH +I +A+  A ++LE++P+    Y L++N+Y++ R W
Sbjct: 493 ICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRW 552

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            + A+ R  MR     K P CSWIE+  +++ F++ D SHP    +   +  +  LME+ 
Sbjct: 553 KEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKE 612



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 216/452 (47%), Gaps = 55/452 (12%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G +    +  H+ +   LK  A    L  G+ LH +I+++GL   L   N ++++Y K +
Sbjct: 96  GMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLR 155

Query: 113 --------------AFDDM------------------EKLFDEMRVRNIVTWNTLISGII 140
                          FD+M                   K+F+ M  +++V+WNT+I+G  
Sbjct: 156 FLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNA 215

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G         R M   N++ D  T +S+L    +  DI  G+ +H   ++ G   + +
Sbjct: 216 RNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIY 275

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V+S+L+D+Y KC  V D+ RVF  +  RD + WN +++    N L D  +  F  M +  
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK 335

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K   ++FSS++ +C  L +  LG+Q+HG + +  FD ++ +A+SLVDMYAK GNI  A 
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD M  +++VSW  M++G   +G   +A++L   M       +   + ++L++C    
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM-------ETEGIKAVLTACSHGG 448

Query: 379 ISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GSVKEPDLVT 432
           +  E  +        + I  GV+ + ++ + L     + G +  A     G    P    
Sbjct: 449 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLL----GRAGRLEEAYDFICGMHIGPTGSI 504

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           W +++ A   H    ++I++ EK+ +  +  D
Sbjct: 505 WATLLSACRVH----KNIDMAEKVANRILEVD 532



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 191/417 (45%), Gaps = 41/417 (9%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            +LLR  +        ++LH+ +LK     +    S L+ +Y     + D+ R+F+ +  
Sbjct: 10  KALLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHF 68

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
              + W  ++ CY  + L   ++  F  M   G+  D+  F S++ SC  L    LG  +
Sbjct: 69  PPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESL 128

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR-------VFDGMT------------- 325
           HG +I+   D D+    +L++MY+K   ++++ R       VFD MT             
Sbjct: 129 HGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS 188

Query: 326 ------------AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
                        K++VSWNT++ G  +NG   E ++++R+M   +  PD  TL+S+L  
Sbjct: 189 EDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPL 248

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
                     +++H  +I+ G+ A + + ++LI+ Y+KC  +A + + F  + E D ++W
Sbjct: 249 IAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISW 308

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR---YFNL 490
            SII     +GL  E +  F +ML   ++P S +F  ++ AC+H   +  G +   Y   
Sbjct: 309 NSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 368

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
              D +I   S     L D+  + G +  A  +   M +     +  A I  C +HG
Sbjct: 369 NGFDENIFIASS----LVDMYAKCGNIRTAKQIFDRMRLRDMV-SWTAMIMGCALHG 420


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 180/555 (32%), Positives = 328/555 (59%), Gaps = 6/555 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L +SA     +  +++H + +K+GL ++++  N ++  Y KC +   + ++F+E   +N 
Sbjct: 119 LPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNE 178

Query: 130 VTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+WN++I+G+  C G   +    FR M+    + + +T +S+L   V+ +  + G+ +H 
Sbjct: 179 VSWNSIINGLA-CKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHG 237

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           F +++G   + F++++L+D+Y K G   +A  +F  +  R++V WN M++ YALN L   
Sbjct: 238 FSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLE 297

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           AI     M+  G   +  TF++++ +C  LG    G++IH + ++     D+ V+ SL+D
Sbjct: 298 AIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLID 357

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK G +  A  VF+  + K+ VS+N +++G+ +  D  +++ L  +M      PD V+
Sbjct: 358 MYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVS 416

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
              ++S+C +L+   + ++VH  A++N + + L + N+L++ Y+KCG I  A + F  + 
Sbjct: 417 FVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQIL 476

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+ +W ++I  Y   G  + +I +FE M    V+ D ++++ VLSACSHGGLV  G +
Sbjct: 477 FKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQ 536

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF+ M++   + P   HYTC+ DLLGR G + EA  L+  +PI P ++  GA +GAC+++
Sbjct: 537 YFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIY 595

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G++ L + AAE L EL+P     Y L+SN+YA    W +  ++R++M+     K PGCSW
Sbjct: 596 GNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSW 655

Query: 607 IEIAGEIHTFVSSDR 621
           ++I  ++H FV+ +R
Sbjct: 656 VQIYDQVHAFVAEER 670



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 229/410 (55%), Gaps = 10/410 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G ++H  + KLG    + + N +L +Y  C   +D  +LFDEM  R++V+WNT+I G++
Sbjct: 28  KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTII-GLL 86

Query: 141 NCGGNVTP----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +  G+ T     YF  +L   ++ + ++  SLL      +D E+ RR+H + +KVG    
Sbjct: 87  SVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQ 146

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLM 254
               +ALVD YGKCG V+   +VF+E + ++ V WN +++   L C G    A+  F +M
Sbjct: 147 VTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIIN--GLACKGRCWDALNAFRMM 204

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G + +  T SS++     L   K G++IHG  ++   + D+ +A SL+DMYAK+G+ 
Sbjct: 205 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHS 264

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            +A  +F  +  +N+VSWN M+  +  N    EA++ +  M +   CP+ VT  ++L +C
Sbjct: 265 TEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPAC 324

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L      +++HA  ++ G+ + L + N+LI+ Y+KCG +  A   F + ++ D V++ 
Sbjct: 325 ARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRK-DEVSYN 383

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +I  Y+      +S+ +F +M     +PD ++F+ V+SAC++   + +G
Sbjct: 384 ILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG 433



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 175/335 (52%), Gaps = 5/335 (1%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M+   V+LD  TF  +L+ C  + DI  G  +H  + K+GF  + +V + L+ LYG CGF
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA---VFNLMRLEGMKGDYFTFSSL 269
           + DARR+FDE+  RD+V WN ++   ++N  GD   A    F ++    +K +  +  SL
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVN--GDYTEARNYYFWMILRSVIKPNLVSVISL 118

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           +     L   ++ R+IH   +K   D  V    +LVD Y K G++    +VF+    KN 
Sbjct: 119 LPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNE 178

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           VSWN+++ G    G   +A+   R M+     P+ VT++SIL     L      +++H +
Sbjct: 179 VSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGF 238

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
           +++ G +  + I N+LI+ Y+K G    A   F ++   ++V+W ++I  YA + L  E+
Sbjct: 239 SMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEA 298

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           I    +M      P+++ F  VL AC+  G +  G
Sbjct: 299 IRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG 333



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 240/518 (46%), Gaps = 75/518 (14%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L V  +    + GK++H   M++G    + + N ++ +Y K     +   +F  +  
Sbjct: 217 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 276

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL-----------DHITFNSLLRACVQA 175
           RNIV+WN +I+              R+ L+ +R            + +TF ++L AC + 
Sbjct: 277 RNIVSWNAMIANYA---------LNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARL 327

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
             +  G+ +H+  +++G   + FVS++L+D+Y KCG +  AR VF+    +D V +N+++
Sbjct: 328 GFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNILI 386

Query: 236 SCYAL--NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
             Y+   +CL   ++ +F+ MRL G K D  +F  ++++C  L + K G+++HG+ ++  
Sbjct: 387 IGYSETDDCL--QSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNH 444

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
               + V+ SL+D Y K G ID ACR+F+ +  K+V SWNTM++G+G  G+   A+ +  
Sbjct: 445 LYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFE 504

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M   +   D V+  ++LS+C            H   ++ G Q F  +            
Sbjct: 505 AMRDDTVQYDLVSYIAVLSACS-----------HGGLVERGWQYFSEM------------ 541

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
                        EP  + +T ++      G  +E+ ++ +++    + PD+  +  +L 
Sbjct: 542 --------LAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL---PIAPDANIWGALLG 590

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEA---YDLLASMPI 529
           AC   G V  G R    +   + + P    +Y  L+++    G   EA    +L+ S   
Sbjct: 591 ACRIYGNVELGRRAAEHL---FELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGA 647

Query: 530 EPRS--------DTLGAFIGACKVHGSIGLAKWAAEKL 559
           +           D + AF+   +V G   L  W AE +
Sbjct: 648 KKNPGCSWVQIYDQVHAFVAEERVEG-FELGDWLAESV 684



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 166/327 (50%), Gaps = 8/327 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A+ GFL  GK++H+  +++GL + L + N ++ +Y KC        +F+  R
Sbjct: 317 FTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR 376

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++ V++N LI G       +     F  M L   + D ++F  ++ AC     ++ G+ 
Sbjct: 377 -KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKE 435

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   L+     + FVS++L+D Y KCG ++ A R+F+++L +D+  WN M+  Y +   
Sbjct: 436 VHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGE 495

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + AI++F  MR + ++ D  ++ +++++C   G  + G Q    ++ Q  +   +  T 
Sbjct: 496 LETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTC 555

Query: 304 LVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVG---FGQNGDGREAVKLLRDMLQGS 359
           +VD+  + G +++A ++   +  A +   W  ++     +G    GR A + L + L+  
Sbjct: 556 MVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFE-LKPQ 614

Query: 360 FCPDEVTLASILSSCGSLSISCETRQV 386
            C   + L++I +  G    + + R++
Sbjct: 615 HCGYYILLSNIYAETGRWDEANKIREL 641


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 207/652 (31%), Positives = 329/652 (50%), Gaps = 99/652 (15%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H  ++K GL   + L N +++VY K        KLFDEM +R   +WNT++S     G 
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 145 ---------------------------NVTPYFR------RMLLDNVRLDHITFNSLLRA 171
                                      N+  Y +       M+ + +     T  ++L +
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC------ 225
                 +E G+++HSFI+K+G   N  VS++L+++Y KCG    A+ VFD ++       
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 226 -------------------------RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM- 259
                                    RD+V WN M+S Y        A+ +F+ M  + M 
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D FT +S++++C  L    +G QIH  ++   FD+  +V  +L+ MY++ G ++ A R
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 320 ---------------------------------VFDGMTAKNVVSWNTMVVGFGQNGDGR 346
                                            +FD +  ++VV+W  M+VG+ Q+G   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYG 395

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA+ L R M+     P+  TLA++LS   SL+     +Q+H  A+K+G    +S+ NALI
Sbjct: 396 EAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALI 455

Query: 407 NAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
             Y+K GSI  A + F  ++ E D V+WTS+I A A HG ++E++E+FE ML   +RPD 
Sbjct: 456 TMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I ++ V SAC+H GLV++G +YF++M     I+P   HY C+ DL GR GLL EA + + 
Sbjct: 516 ITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIE 575

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            MPIEP   T G+ + AC+V+ +I L K AAE+LL LEP     Y+ ++N+Y++   W +
Sbjct: 576 KMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEE 635

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
            A++RK M+D    K  G SWIE+  ++H F   D  HPQ   +Y  +  ++
Sbjct: 636 AAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIW 687



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 204/431 (47%), Gaps = 70/431 (16%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK-------AFDDM-------------- 117
           L+ GK++HS I+KLGL   +S+ N +L++Y KC         FD M              
Sbjct: 162 LETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIAL 221

Query: 118 ----------EKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDN-VRLDHIT 164
                        F++M  R+IVTWN++ISG    G ++     F +ML D+ +  D  T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFT 281

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR------ 218
             S+L AC   + + +G ++HS I+  GF ++  V +AL+ +Y +CG VE ARR      
Sbjct: 282 LASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query: 219 ---------------------------VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
                                      +FD +  RD+V W  M+  Y  + L   AI +F
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLF 401

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M  E  + + +T +++++   +L S   G+QIHG  +K      V V+ +L+ MYAK 
Sbjct: 402 RSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKA 461

Query: 312 GNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
           G+I  A R FD +   ++ VSW +M++   Q+G   EA++L   ML     PD +T   +
Sbjct: 462 GSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521

Query: 371 LSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EP 428
            S+C    +  + RQ        + +   LS    +++ + + G +  A +    +  EP
Sbjct: 522 FSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEP 581

Query: 429 DLVTWTSIIGA 439
           D+VTW S++ A
Sbjct: 582 DVVTWGSLLSA 592



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 7/212 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV-RN 128
           L V++    L  GKQ+H   +K G    +S+ N ++ +Y K  +     + FD +R  R+
Sbjct: 420 LSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERD 479

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            V+W ++I  +   G        F  ML++ +R DHIT+  +  AC  A  +  GR+   
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539

Query: 187 FILKVGFGLNCFVSSA-LVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCL 243
            +  V   +      A +VDL+G+ G +++A+   +++ +  D+V W  ++S C     +
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNI 599

Query: 244 GDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
             G +A   L+ LE    G Y   ++L ++CG
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACG 631


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 312/568 (54%), Gaps = 6/568 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           Q+H+H++KLG    L + N ++  Y K        +LF  M  ++ VT+N+L++G  N G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 144 GN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            N      F  +    ++    TF +LL A V  DD + G+++H F+LK  F  N FV +
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D Y K   V++  ++F E+   D + +NV+++ YA N     +  +F  ++      
Sbjct: 281 ALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
             F F++L++   +  + ++GRQIH   I    + +  V  +LVDMYAK     +A ++F
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIF 400

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D +  K+ V W  M+  + Q G   E + +  DM +     D+ T ASIL +C +L+   
Sbjct: 401 DNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASIS 460

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQ+H+  I++G  + +   +AL++ Y+KCG +  A++ FG + E + V+W ++I AYA
Sbjct: 461 LGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYA 520

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            +G    ++  F++M+    +PDS++FL VLSACSH G V E L +FN M   Y + P  
Sbjct: 521 QNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKR 580

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           EHYT + D+L R G   EA  L+  MP EP      + + +C++H +  LAK AA++L  
Sbjct: 581 EHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFN 640

Query: 562 LEPSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           +E  +    Y  +SN+YA    W +VA+++K MRD    KVP  SW+EI  + H F ++D
Sbjct: 641 MEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSAND 700

Query: 621 RSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           +SHP+   M  +L  +  L +E    G+
Sbjct: 701 KSHPE---MKKILRKINALSKEMEKKGY 725



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/551 (26%), Positives = 271/551 (49%), Gaps = 20/551 (3%)

Query: 49  LRNSGTIHESTHSAHSFYSQALKVS-------AKF---GFLQQGKQLHSHIM--KLGLCN 96
           LRNS     S +S H   +  +K         + F    FL++G  +H+H +  ++   N
Sbjct: 14  LRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKN 73

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRML 154
            +SL N ++  ++K        +LFD M  R  V+W  LI G +    +   +  +  M 
Sbjct: 74  TISL-NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
              +  D++T  +LL    + +   V  ++H+ ++K+G+  N  V ++LVD Y K   + 
Sbjct: 133 RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY 192

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
            A ++F  +L +D V +N +++ Y+   L + AI +F  +   G+K   FTF++L+++  
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAV 252

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
            L  +K G+Q+HG V+K +F  +V V  +L+D Y+K+  +D+  ++F  M   + +S+N 
Sbjct: 253 GLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNV 312

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS-SCGSLSISCETRQVHAYAIKN 393
           ++  +  NG  +E+  L R +    F   +   A++LS +  SL++    RQ+H  AI  
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRM-GRQIHCQAITV 371

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G      +ENAL++ Y+KC     A + F ++     V WT++I AY   G  +E I VF
Sbjct: 372 GANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVF 431

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
             M    V  D   F  +L AC++   +S G +  +L+I     + +    + L D   +
Sbjct: 432 SDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAK 490

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            G + +A      MP E  S +  A I A   +G++     + +++++    KP + + +
Sbjct: 491 CGCMTDAIKSFGEMP-ERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ-SGYKPDSVSFL 548

Query: 574 SNVYASERCWF 584
           S + A   C F
Sbjct: 549 SVLSACSHCGF 559


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 315/556 (56%), Gaps = 4/556 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++GK +HS + +      + +   +++ Y KC +  D  K+FD M  R++ TWN++IS 
Sbjct: 26  LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISA 85

Query: 139 --IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             I    G     F+RM  +  R D +TF S+L ACV  ++++ G+ +   I +  F L+
Sbjct: 86  YSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELD 145

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV +AL+ +Y +C   E+A +VF  +  ++L+ W+ +++ +A +     A+  F +M+ 
Sbjct: 146 LFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQ 205

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK--NGNI 314
           EG+  +  TF SL+N   T    +   +IH L+ +   D    ++ +LV++Y +   G +
Sbjct: 206 EGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGEL 265

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           D A  +   M  + + +WN ++ G+  +G  REA++  + +   +   D+VT  S+L++C
Sbjct: 266 DVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNAC 325

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            S +   E + +H+ A++ G+ + + ++NAL N YSKCGS+  A + F S+     V+W 
Sbjct: 326 TSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWN 385

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            ++ AYA HG S+E +++  KM    V+ + I F+ VLS+CSH GL++EG +YF+ +  D
Sbjct: 386 GMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHD 445

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
             I   +EHY CL DLLGR G L EA   ++ MP EP   T  + +GAC+VH  +   K 
Sbjct: 446 RGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKL 505

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA KLLEL+P       ++SN+Y+    W + A+LR+ M      KVPG S I++  ++H
Sbjct: 506 AARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVH 565

Query: 615 TFVSSDRSHPQAVHMY 630
            F   D SHP+A  +Y
Sbjct: 566 EFRVRDTSHPRAAEIY 581



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 209/379 (55%), Gaps = 3/379 (0%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           MLL+ V+ + ITF ++L + V  D +  G+ +HS + +    L+ FV++ALV+ Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           + DAR+VFD + CR +  WN M+S Y+++     A  +F  M+ EG + D  TF S++++
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C    + + G+ +   + + SF+LD+ V T+L+ MYA+  + ++A +VF  M  KN+++W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           + ++  F  +G   EA++  R M Q    P+ VT  S+L+   + S   E  ++H    +
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE 240

Query: 393 NGVQAFLSIENALINAYSKC--GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +G+    ++ NAL+N Y +C  G +  A      + E  +  W  +I  Y  HG S+E++
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
           E ++++   A+  D + F+ VL+AC+    ++EG +  +    +  +  D      LT++
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNM 359

Query: 511 LGRVGLLVEAYDLLASMPI 529
             + G +  A  +  SMPI
Sbjct: 360 YSKCGSMENARRIFDSMPI 378


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/579 (32%), Positives = 319/579 (55%), Gaps = 6/579 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           Q   +  I  + H+    ++ A  +S+ F     G+Q H+  +K+     + + + +L++
Sbjct: 100 QRMRADNILPNAHTFSGIFTAASNLSSIFF----GQQAHAVAIKMACFYDVFVGSSLLNM 155

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITF 165
           Y K     +  ++FD M  RN VTW T+ISG  I    G     F  M  +   ++   F
Sbjct: 156 YCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAF 215

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S+L A    + ++ G+++H   +K G  +   + +ALV +Y KCG ++D+ +VF+    
Sbjct: 216 TSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSND 275

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           ++ + W+ M++ YA +     A+ +F+ M   G+    FT   ++N+C    + + G+Q+
Sbjct: 276 KNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQV 335

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  ++K  F+  + + T+LVDMYAK+G  +DA + F+ +   ++V W +M+ G+ QNG+ 
Sbjct: 336 HNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGEN 395

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            +A+ L   M      P+E+T+AS+L +C +L+   + RQ+HA  IK G+   ++I +AL
Sbjct: 396 EDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSAL 455

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
              Y+KCG++      F  + E D+++W ++I   + +G  KE++E+FE+M     +PD 
Sbjct: 456 STMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDD 515

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           + F+ VLSACSH GLV  G  YF +M  ++ +LP  EHY C+ D+L R G L EA + + 
Sbjct: 516 VTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIE 575

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           S  I+         +GAC+ + +  L  +A EKL+EL   +   Y L+S +Y +     D
Sbjct: 576 STTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPED 635

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           V R+R MM+     K PGCSWIE+   +H FV  D+ HP
Sbjct: 636 VERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHP 674



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 242/455 (53%), Gaps = 6/455 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNK-LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           LQ+G+ LH+ I+KL   +  + L N +++ Y KC      + +FD +  +++++WN LI+
Sbjct: 23  LQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLIN 82

Query: 138 GIINCGGN----VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           G    G      V   F+RM  DN+  +  TF+ +  A      I  G++ H+  +K+  
Sbjct: 83  GYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMAC 142

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + FV S+L+++Y K G + +AR VFD +  R+ V W  M+S YA+  L   A  VF L
Sbjct: 143 FYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFEL 202

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR E    + F F+S++++         G+QIH L +K    + + +  +LV MYAK G+
Sbjct: 203 MRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGS 262

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +DD+ +VF+    KN ++W+ M+ G+ Q+GD  +A+KL   M      P E TL  +L++
Sbjct: 263 LDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNA 322

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C       E +QVH Y +K G ++ L I  AL++ Y+K G    A + F  +++PDLV W
Sbjct: 323 CSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLW 382

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           TS+I  Y  +G +++++ ++ +M    + P+ +    VL ACS+     +G R  +    
Sbjct: 383 TSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG-RQIHARTI 441

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            Y +  +    + L+ +  + G L E   +   MP
Sbjct: 442 KYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMP 476


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 183/486 (37%), Positives = 286/486 (58%), Gaps = 3/486 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +H  + ++LR+CV +  +  GR+LH+ +L  G GL+  +++ LVDLY  CG V  ARRVF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 221 DEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGS 278
           DE+  + ++ LWNV++  YA +   + AI ++  M   G MK D FT+  ++ +C  L  
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLD 186

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR++H  V++ ++  DV V T L+DMYAK G +D+A  VF+  T ++   WN+M+  
Sbjct: 187 LSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAA 246

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            GQNG   EA+ L R+M      P   TL S +S+    S     R++H Y  + G  + 
Sbjct: 247 CGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQ 306

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             ++ +L++ Y+K G +  A   F  +   +L++W ++I  +  HG +  + E+F +M S
Sbjct: 307 DKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRS 366

Query: 459 HA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
            A V PD I F+ VLSAC+HGG+V E    F+LM++ Y I P  +HYTCL D+LG  G  
Sbjct: 367 EAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRF 426

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA D++  M ++P S   GA +  CK+H ++ LA+ A +KL+ELEP    NY L+SN+Y
Sbjct: 427 KEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIY 486

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A    W + AR+RK+M +    K+  CSWIE+ G+ H F+  D SHP++  +Y  L  + 
Sbjct: 487 AESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLE 546

Query: 638 GLMEEN 643
           GL+ + 
Sbjct: 547 GLISQT 552



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 206/445 (46%), Gaps = 22/445 (4%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           HS Y+  L+       ++ G+QLH+ ++  G      L  +++ +Y  C       ++FD
Sbjct: 68  HSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFD 127

Query: 123 EMRVR-NIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           EM  + N+  WN LI        C   +  Y   +   +++ D+ T+  +L+AC    D+
Sbjct: 128 EMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDL 187

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
             GR +H  +++  +  + FV + L+D+Y KCG +++A  VF++   RD  +WN M++  
Sbjct: 188 SAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAAC 247

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N     A+ +   M  EG+     T  S +++     +   GR++HG   ++ F    
Sbjct: 248 GQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQD 307

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-Q 357
            + TSL+DMYAK+G +  A  +F+ +  + ++SWN M+ GFG +G    A +L   M  +
Sbjct: 308 KLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSE 367

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVH-----AYAIKNGVQAFLSIENALINAYSKC 412
               PD +T   +LS+C    +  E ++V       Y+IK  VQ +      L++     
Sbjct: 368 AQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHY----TCLVDVLGHS 423

Query: 413 GSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV--RPDSIAFL 469
           G    A     G + +PD   W +++     H    +++E+ E  L   +   P+     
Sbjct: 424 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIH----KNVELAELALQKLIELEPEDAGNY 479

Query: 470 EVLSAC-SHGGLVSEGLRYFNLMIS 493
            +LS   +  G   E  R   LM +
Sbjct: 480 VLLSNIYAESGKWEEAARVRKLMTN 504


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 174/469 (37%), Positives = 281/469 (59%), Gaps = 1/469 (0%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            +++ + AC Q+ +++  R++H+ +    F  + F+ ++L+ LY KCG V +A +VFD++
Sbjct: 53  VYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             +D+V W  +++ YA N +   AI +   M     K + FTF+SL+ + G    S +G 
Sbjct: 113 RNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGG 172

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIH L +K  +  DV V ++L+DMYA+ G +D A  VFD + +KN VSWN ++ GF + G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           DG  A+ +  +M +  F     T +SI S+   +    + + VHA+ IK+  +    + N
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGN 292

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            +++ Y+K GS+  A + F  V   DLVTW S++ A+A +GL KE++  FE+M    +  
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           + I+FL +L+ACSHGGLV EG  YF+ MI +Y++ P+ EHY  + DLLGR GLL  A   
Sbjct: 353 NQISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVF 411

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  MP+EP +   GA + AC++H +  + ++AA+ + +L+P       L+ N+YAS   W
Sbjct: 412 IFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHW 471

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
              AR+RKMM+     K P CSW+EI   +H FV++D +HP+A  +Y M
Sbjct: 472 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKM 520



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 225/442 (50%), Gaps = 17/442 (3%)

Query: 15  FKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLR--NSGTIHESTHSAHSFYSQALKV 72
           +K PL  L   L+  Q T+           +   L   +SG +  +    H+F    +  
Sbjct: 5   YKFPLRRLPRHLHVRQYTSAAANPVPAAPAVLHDLDHLDSGELAPTPRVYHAF----ITA 60

Query: 73  SAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
            A+   L   +++H+H+          L N ++H+Y KC +  +  K+FD+MR +++V+W
Sbjct: 61  CAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSW 120

Query: 133 NTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
            +LI+G    +           ML    + +  TF SLL+A     D  +G ++H+  +K
Sbjct: 121 TSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVK 180

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
             +  + +V SAL+D+Y +CG ++ A  VFD++  ++ V WN ++S +A    G+ A+ V
Sbjct: 181 CDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMV 240

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F  M+  G +  +FT+SS+ ++   +G+ + G+ +H  +IK    L   V  +++DMYAK
Sbjct: 241 FAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAK 300

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
           +G++ DA +VF+ +  K++V+WN+M+  F Q G G+EAV    +M +     ++++   I
Sbjct: 301 SGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCI 360

Query: 371 LSSCGSLSISCETRQ----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ-CFGSV 425
           L++C    +  E +     +  Y ++  ++ ++++    ++   + G +  AL   F   
Sbjct: 361 LTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTV----VDLLGRAGLLNYALVFIFKMP 416

Query: 426 KEPDLVTWTSIIGAYAFHGLSK 447
            EP    W +++ A   H  +K
Sbjct: 417 MEPTAAVWGALLAACRMHKNAK 438



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           G   P      + +++C       + R++HA+   +       ++N+LI+ Y KCGS+  
Sbjct: 45  GELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVE 104

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           A + F  ++  D+V+WTS+I  YA + +  E+I +   ML    +P+   F  +L A
Sbjct: 105 AHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 198/583 (33%), Positives = 321/583 (55%), Gaps = 8/583 (1%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           +E+     + ++  L    +  F+  G Q+H  ++KLG  N   +   +L +Y KCK  +
Sbjct: 249 NENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVE 308

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLR 170
           D E +FD++ V+    WN +IS  +   GN   Y     +++M +  +  D +T  ++L 
Sbjct: 309 DAENVFDQVSVKKTELWNAMISAYV---GNGRSYDGLKIYKQMKVLQIPPDSLTATNVLS 365

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           +C      + GR +H+ ++K     N  + SAL+ +Y KCG  +DA  +F+ +  RD+V 
Sbjct: 366 SCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVA 425

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           W  M+S +  N     A+  +N M + G K D    +S+V++C  L +  LG  IHGL I
Sbjct: 426 WGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAI 485

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K   + DV VA+SLVDMY+K      +  VF  M  KN+V+WN+++  + +NG    ++ 
Sbjct: 486 KSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSIS 545

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L   M Q    PD V++ S+L S  S+++  + + VH Y I+  + + L +ENALI+ Y 
Sbjct: 546 LFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYI 605

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  A   F ++ + +LVTW  +I     HG   +++ +F++M S  + PD I F+ 
Sbjct: 606 KCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFIS 665

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +L++C+H G + EGL+ F LM  ++ I P  EHY  + DLLGR G L +AY  + ++PIE
Sbjct: 666 LLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIE 725

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P      + + +C+VH ++ L K AA KLL++EPS+  NY  + N+Y         A LR
Sbjct: 726 PDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLR 785

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             M++    K PGCSWIE+   I  F S D S P+ + +Y +L
Sbjct: 786 ASMKEKGLKKTPGCSWIEVGNSIDVFFSGDSSSPRTIEIYDLL 828



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 235/474 (49%), Gaps = 12/474 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFD-- 122
           Y   LK       LQ GK +HS I+  G   +   +   +++ Y KC +F +  K+FD  
Sbjct: 52  YPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKL 111

Query: 123 ---EMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
              E+  +++  WN++++G    G        F RM L  VR D  +   LL A      
Sbjct: 112 PESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGA--SDGH 169

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS 236
           +   +++H + ++  F  + F+ S L+ +Y  CG   DA R+F E+  + ++V WNVM+ 
Sbjct: 170 LGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIG 229

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            +  N L + ++ V+ L + E +K    +F+S +++C        G Q+H  ++K  F+ 
Sbjct: 230 GFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFEN 289

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  V TSL+ MY+K   ++DA  VFD ++ K    WN M+  +  NG   + +K+ + M 
Sbjct: 290 DPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMK 349

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PD +T  ++LSSC  +      R +HA  +K  +Q+ +++++AL+  YSKCG+  
Sbjct: 350 VLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSD 409

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F ++K  D+V W S+I  +  +    E++E +  M  +  +PDS     V+SAC+
Sbjct: 410 DANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACT 469

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
               V+ G     L I    +  D    + L D+  +      + ++ + MP++
Sbjct: 470 GLKNVNLGCTIHGLAIKS-GLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLK 522



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 170/335 (50%), Gaps = 14/335 (4%)

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLY 207
           ++ R  L+  R    T+ SLL+AC    +++ G+ +HS I+  GF   + +++++L++ Y
Sbjct: 39  FYSRNPLNATRF---TYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFY 95

Query: 208 GKCGFVEDARRVFD-----EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
            KCG   +A +VFD     EV  +D+  WN +V+ Y         IA F  M+L G++ D
Sbjct: 96  FKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPD 155

Query: 263 YFTFSSLVN-SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
            ++   L+  S G LG +K   QIHG  +++ F  D  + + L+ MY   G   DA R+F
Sbjct: 156 AYSLCILLGASDGHLGYAK---QIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLF 212

Query: 322 DGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
             +  K NVV+WN M+ GFG+NG    ++++       +      +  S LS+C      
Sbjct: 213 KELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFV 272

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
               QVH   +K G +    +  +L+  YSKC  +  A   F  V       W ++I AY
Sbjct: 273 SFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAY 332

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             +G S + ++++++M    + PDS+    VLS+C
Sbjct: 333 VGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSC 367



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 158/314 (50%), Gaps = 21/314 (6%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFD 322
           FT+ SL+ +CG L + + G+ IH  +I + F   D  + TSL++ Y K G+  +A +VFD
Sbjct: 50  FTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFD 109

Query: 323 GM-----TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL-SSCGS 376
            +     + ++V  WN++V G+ + G  +E +     M      PD  +L  +L +S G 
Sbjct: 110 KLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGH 169

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP-DLVTWTS 435
           L  +   +Q+H Y+++        +E+ LI  Y  CG    A + F  +++  ++V W  
Sbjct: 170 LGYA---KQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNV 226

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +IG +  +GL + S+EV+    +  V+  S +F   LSAC  G  VS G++    ++   
Sbjct: 227 MIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVK-- 284

Query: 496 HILPDSEHYTC--LTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
            +  +++ Y C  L  +  +  L+ +A   +D ++    E  +  + A++G  + +   G
Sbjct: 285 -LGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYD--G 341

Query: 551 LAKWAAEKLLELEP 564
           L  +   K+L++ P
Sbjct: 342 LKIYKQMKVLQIPP 355


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 301/559 (53%), Gaps = 7/559 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QL S  ++ GL + +   + +L VY KC    D  ++FD M VRNIV+WN +I+G  +
Sbjct: 110 GAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTD 169

Query: 142 C--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                     F  M       D  TF  LL          + R+LH  I+K G  L    
Sbjct: 170 SRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVA 229

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEG 258
            +A +  Y +C  + D+R++FD +  RDL+ WN M+  YA + L D A+  F  +MR  G
Sbjct: 230 LNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESG 289

Query: 259 MKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMY---AKNGNI 314
           ++ D ++F+S ++ C   G   + GR IH LVIK   +    V  +++ MY   A N  +
Sbjct: 290 IQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMM 349

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +DA   F  +  K+ VSWN+M+ G+  +G   +A+K  R M   +   DE  L++ L SC
Sbjct: 350 EDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSC 409

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L++    RQVH+  +++G  +   + ++LI  YSKCG +  A + F    +   V W 
Sbjct: 410 SDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWN 469

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           S++  YA HG ++   ++F +ML   V  D + F+ +++A SHGGLV EG    N M + 
Sbjct: 470 SMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETR 529

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I    EHY C  DL GR G L +A +L+ SMP +P +      +GAC++HG++ LA  
Sbjct: 530 YKIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASD 589

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
            A  L   EP +   Y L+S++Y+    W D A ++K+MR+    K+PG SWIE+  E+H
Sbjct: 590 VARHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKNEVH 649

Query: 615 TFVSSDRSHPQAVHMYAML 633
           +F + DRSHP+ V ++ ML
Sbjct: 650 SFNADDRSHPRMVEIFDML 668



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 210/414 (50%), Gaps = 9/414 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           H+ ++K G  +  +  NQ+L  Y          ++FDE+   +  +WN+L++  +  G +
Sbjct: 15  HATLLKSGASSP-TPWNQLLTAY-SATGLAAARRVFDEIPHPDAASWNSLLAAHVAAGAH 72

Query: 146 VTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
              +   R M    +        S LR+   A   E+G +L SF ++ G   N F +SAL
Sbjct: 73  RDAWRLLRAMHARGLAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASAL 132

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D+Y KCG + DARRVFD +  R++V WN +++ Y  +     A+ +F  M+  G   D 
Sbjct: 133 LDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDG 192

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            TF+ L+ +        L RQ+HG ++K    L ++   + +  Y++   + D+ ++FDG
Sbjct: 193 TTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDG 252

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVK-LLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
           + +++++SWN+M+  +  +G   EA++  +R M +    PD  +  S +S C       +
Sbjct: 253 IESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQ 312

Query: 383 T-RQVHAYAIKNGVQAFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTSIIG 438
             R +H+  IK G++    + NA+I  Y++      +  A  CF S+   D V+W S++ 
Sbjct: 313 QGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLT 372

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            Y+ HGLS ++++ F  M +  +R D       L +CS   ++  G +  +L++
Sbjct: 373 GYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVV 426



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL+  +    L+ G+Q+HS +++ G  +   + + ++ +Y KC    D  K F+E   
Sbjct: 403 SAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADK 462

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR- 183
            + V WN+++ G    G    VT  F  ML   V LDH+TF +L+ A      ++ G   
Sbjct: 463 SSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEI 522

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV 235
           L++   +    +     +  VDLYG+ G ++ A+ + + +  + D ++W  ++
Sbjct: 523 LNTMETRYKIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLL 575


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 291/527 (55%), Gaps = 39/527 (7%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQAD 176
           L  ++R  N+  +N +I G+     +       +++ML   +  D+ T   +L+AC ++ 
Sbjct: 95  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 154

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +  G  +H   +K+G   + +VS+ L+ +Y  C  +  AR+VFD    RDLV W  M+ 
Sbjct: 155 AVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQ 214

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y                                     +G ++ G  ++ ++   + +L
Sbjct: 215 GYV-----------------------------------KMGFAREGVGLY-IIRNSNVNL 238

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV V  +LVDMY K G+ + A +VF  M  KNVVSWN+M+ G  Q G  +E++ + R M 
Sbjct: 239 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 298

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    PD+VTL ++L+SC +L +    + VHAY  +N ++A   I NAL++ Y+KCGSI 
Sbjct: 299 RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 358

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F ++   D+ ++T++I   A HG   +++++F +M    + PD + F+ VL+ACS
Sbjct: 359 QACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 418

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV EG +YF  M + Y++ P  EHY C+ DLLGR GL+ EA + + +MPIEP +  L
Sbjct: 419 HVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVL 478

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GACK+HG + L +   +K+ ++EP K   Y L+SN+Y+S   W D  +LRK M++ 
Sbjct: 479 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 538

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
              K PGCS IE+ G IH F   D+SHP+   +Y +L  +   ++ N
Sbjct: 539 NLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 585



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 195/401 (48%), Gaps = 44/401 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A+   +++G+++H   +K+GL + + + N ++ +Y  C       K+FD    R++
Sbjct: 147 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 206

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           V+W T+I G +  G      F R   + V L +I  NS                      
Sbjct: 207 VSWTTMIQGYVKMG------FAR---EGVGL-YIIRNS---------------------- 234

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
                L+ FV +ALVD+Y KCG    AR+VF E+  +++V WN M+S  A       ++ 
Sbjct: 235 --NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLY 292

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +F  M+  G+K D  T  +++NSC  LG  +LG+ +H  + +     D  +  +LVDMYA
Sbjct: 293 MFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYA 352

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G+ID AC VF  M  K+V S+  M+VG   +G G +A+ L  +M +    PDEVT   
Sbjct: 353 KCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVG 412

Query: 370 ILSSCGSLSISCETRQVHA-----YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +L++C  + +  E R+        Y ++  ++ +      +++   + G I  A +   +
Sbjct: 413 VLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHY----GCMVDLLGRAGLINEAEEFIRN 468

Query: 425 VK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +  EPD     +++GA   HG  +    V +K+     R D
Sbjct: 469 MPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKD 509



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 166/364 (45%), Gaps = 49/364 (13%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           K GF ++G  L+  I++    N  + + N ++ +Y+KC   +   K+F EM V+N+V+WN
Sbjct: 218 KMGFAREGVGLY--IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 275

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++ISG+   G        FR+M    V+ D +T  ++L +C     +E+G+ +H+++ + 
Sbjct: 276 SMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN 335

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               + F+ +ALVD+Y KCG ++ A  VF  +  +D+  +  M+   A++  G  A+ +F
Sbjct: 336 QIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLF 395

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           + M   G++ D  TF  ++ +C  +G  + GR+                           
Sbjct: 396 SEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKY-------------------------- 429

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
              +D   +++      +  +  MV   G+ G   EA + +R+M      PD   L ++L
Sbjct: 430 --FEDMSTIYN--LRPQLEHYGCMVDLLGRAGLINEAEEFIRNM---PIEPDAFVLGALL 482

Query: 372 SSCG-----SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            +C       L  S   +       K+G    +S      N YS       AL+   ++K
Sbjct: 483 GACKIHGKVELGESVMKKIEKIEPRKDGAYVLMS------NIYSSANRWRDALKLRKTMK 536

Query: 427 EPDL 430
           E +L
Sbjct: 537 ERNL 540


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 328/601 (54%), Gaps = 16/601 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A  G L  G+++H+  +K G  + + + N ++++Y KC   +D + +F+ M 
Sbjct: 204 FASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNTL++G+    C       F        ++   T+ ++++ C     + + R+
Sbjct: 264 TRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ 323

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LHS +LK GF L   V +AL D Y KCG + DA  +F      R++V W  ++S     C
Sbjct: 324 LHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS----GC 379

Query: 243 LGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           + +G    A+ +F+ MR + +  + FT+S+++ +  ++    L  QIH  VIK ++    
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIP 435

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V T+L+  Y+K G+ +DA  +F  +  K+VV+W+ M+    Q GD   A  L   M   
Sbjct: 436 FVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 359 SFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P+E T++S++ +C   S   +  RQ HA +IK      + + +AL++ YS+ G+I  
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F    + DLV+W S+I  YA HG S ++IE F +M +  ++ D + FL V+  C+H
Sbjct: 556 AQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTH 615

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV EG +YF+ M+ D+ I P  EHY C+ DL  R G L E   L+  MP    +    
Sbjct: 616 NGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWR 675

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             +GAC+VH ++ L K++A+KLL LEP     Y L+SN+YA+   W +   +RK+M    
Sbjct: 676 TLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRK 735

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
             K  GCSWI+I  ++H+F++ D+SHP +  +Y  L  +   ++++  S + + +  ++ 
Sbjct: 736 VKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIA 795

Query: 658 E 658
           E
Sbjct: 796 E 796



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 224/421 (53%), Gaps = 10/421 (2%)

Query: 82  GKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G+QLH   +K G    ++S    ++ +Y+KC +  +  ++F+ M  +N+VTW +L++G  
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
           +      V   F RM  + +  +  TF S+L A      +++G+R+H+  +K G   + F
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVF 237

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+++Y KCG VEDA+ VF+ +  RD+V WN +++   LN     A+ +F+  R   
Sbjct: 238 VCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            K    T+++++  C  L    L RQ+H  V+K  F L   V T+L D Y+K G + DA 
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADAL 357

Query: 319 RVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +F   T ++NVVSW  ++ G  QNGD   AV L   M +    P+E T +++L +    
Sbjct: 358 NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA---- 413

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S+S    Q+HA  IK   Q    +  AL+ +YSK GS   AL  F  +++ D+V W++++
Sbjct: 414 SLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAML 473

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-HGGLVSEGLRYFNLMIS-DY 495
             +A  G  + +  +F KM    ++P+      V+ AC+     V +G ++  + I   Y
Sbjct: 474 SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRY 533

Query: 496 H 496
           H
Sbjct: 534 H 534



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 200/398 (50%), Gaps = 14/398 (3%)

Query: 56  HESTHS----AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
           HES  +      S Y+  +K+ A    L   +QLHS ++K G     ++   +   Y KC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 112 KAFDDMEKLFD-EMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSL 168
               D   +F      RN+V+W  +ISG I  G        F RM  D V  +  T++++
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L+A +      +  ++H+ ++K  +    FV +AL+  Y K G  EDA  +F  +  +D+
Sbjct: 411 LKASLSI----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDV 466

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHG 287
           V W+ M+SC+A     +GA  +FN M ++G+K + FT SS++++C    +    GRQ H 
Sbjct: 467 VAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHA 526

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           + IK  +   + V+++LV MY++ GNID A  VF+  T +++VSWN+M+ G+ Q+G   +
Sbjct: 527 ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMK 586

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALI 406
           A++  R M       D VT  +++  C    +  E +Q     +++  +   +     ++
Sbjct: 587 AIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMV 646

Query: 407 NAYSKCGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFH 443
           + YS+ G +   +     +  P   + W +++GA   H
Sbjct: 647 DLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVH 684



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 171/319 (53%), Gaps = 2/319 (0%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDA 216
           V +D  T + +L+AC    D  +G +LH   +K G         ++LVD+Y KCG V + 
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEG 154

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF+ +  +++V W  +++  A   +    +A+F  MR EG+  + FTF+S++++  + 
Sbjct: 155 IEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQ 214

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+  LG+++H   +K      V V  SL++MYAK G ++DA  VF+ M  +++VSWNT++
Sbjct: 215 GALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM 274

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   N    EA++L  +         + T A+++  C +L      RQ+H+  +K+G  
Sbjct: 275 AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFH 334

Query: 397 AFLSIENALINAYSKCGSIAGALQCFG-SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              ++  AL +AYSKCG +A AL  F  +    ++V+WT+II     +G    ++ +F +
Sbjct: 335 LTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSR 394

Query: 456 MLSHAVRPDSIAFLEVLSA 474
           M    V P+   +  +L A
Sbjct: 395 MREDRVMPNEFTYSAMLKA 413



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 164/340 (48%), Gaps = 5/340 (1%)

Query: 216 ARRVFDEVLCRDLVL-WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           AR   DE+  RD  +  N ++  YA   +    +  F++ R  G+  D  T S ++ +C 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 275 TLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
           ++    LG Q+H L +K   D  +V   TSLVDMY K G++ +   VF+GM  KNVV+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +++ G        E + L   M      P+  T AS+LS+  S       ++VHA ++K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G ++ + + N+L+N Y+KCG +  A   F  ++  D+V+W +++     +    E++++F
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS-DYHILPDSEHYTCLTDLLG 512
            +  +   +     +  V+  C++   ++   +  + ++   +H+  +    T L D   
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYS 348

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           + G L +A ++ +         +  A I  C  +G I LA
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/569 (34%), Positives = 301/569 (52%), Gaps = 21/569 (3%)

Query: 79  LQQGKQLHSHIMK------------LGLCNKL-SLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +++ KQ+H+ I+K            + LC K+ SL  Q +H+    +       L +   
Sbjct: 39  VREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWYASSLANFCH 98

Query: 126 VRNIVTWNTLISGIINCGGNVTPYF---RRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
              +  +N +I  +       T  F   R+MLL  +  D  T   LL+AC Q+       
Sbjct: 99  QNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEAL 158

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H+  +K G   N FV + L+  Y   GF+E   +VFD+    DL+ W  ++  Y+   
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMG 218

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLV 300
               AIA F  M       D  T   ++++C  LG   LG++I   +    FD+  DV +
Sbjct: 219 YPSEAIAAFFRMNC---TADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFL 275

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L+DMY K G    A ++F  M  KN+VSWN+M+ G    G  +EA+ + R M     
Sbjct: 276 GNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGL 335

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD VTL  +L+SC +L      + VH+Y  KN ++A   + NAL++ Y+KCGSI  A  
Sbjct: 336 KPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFM 395

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F ++K  D+ ++T++I  +A HG +  ++ +F +M    VRPD +  + VLSACSH GL
Sbjct: 396 VFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGL 455

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           + EG R+F  M   YH+ P +EHY C+ DLLGR GL+ EA      MPI P +   G+ +
Sbjct: 456 LEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLL 515

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GACK+H  + L +   +KL+E+EP +   Y L+SN+Y+S   W D  + RK M+ N   K
Sbjct: 516 GACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKK 575

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
            PGCS IE+ G +H F   ++SHP++  M
Sbjct: 576 TPGCSSIEVDGMVHEFRKGEKSHPKSREM 604


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 300/546 (54%), Gaps = 2/546 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           GKQ HS  +K G    + + + +L++Y K     D  KLFD M  RN V+W T+ISG   
Sbjct: 137 GKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYAS 196

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            +        F  M  +    +     S+L A      +  GR++HS  +K G      V
Sbjct: 197 SDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSV 256

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ALV +Y KCG ++DA R F+    ++ + W+ MV+ YA     D A+ +FN M   G+
Sbjct: 257 ANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGV 316

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
               FT   ++N+C  L +   G+Q+H    K  F L + V +++VDMYAK G++ DA +
Sbjct: 317 LPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARK 376

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
            F+ +   +VV W +++ G+ QNGD    + L   M      P+E+T+AS+L +C SL+ 
Sbjct: 377 GFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAA 436

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +Q+HA  IK G +  + I +AL   Y+KCGS+      F  +   D+++W ++I  
Sbjct: 437 LDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISG 496

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
            + +G   +++E+FEKML   ++PD + F+ +LSACSH GLV  G  YF +M  +++I P
Sbjct: 497 LSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAP 556

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             EHY C+ D+L R G L EA + + S  ++         +GACK H +  L  +A EKL
Sbjct: 557 MVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKL 616

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           +EL   +   Y L+S++Y +     +V R+R++M+    +K PGCSWIE+ G +H FV  
Sbjct: 617 VELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVG 676

Query: 620 DRSHPQ 625
           D  HPQ
Sbjct: 677 DNQHPQ 682



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 241/456 (52%), Gaps = 9/456 (1%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV--RNIVTWNTLISG 138
           +G+ LH+ I+K G  + + + N  L++Y K         LFD +    ++ V+WN+LI+ 
Sbjct: 29  KGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINA 88

Query: 139 IINCGGN-----VTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
                 +         FRRM+  +NV  +  T   +  A     D+  G++ HS  +K G
Sbjct: 89  FSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTG 148

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              + +V S+L+++Y K GFV DAR++FD +  R+ V W  M+S YA + + D A+ VF 
Sbjct: 149 CSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFE 208

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
           LMR E    + F  +S++++  +      GRQ+H L IK      V VA +LV MYAK G
Sbjct: 209 LMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCG 268

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++DDA R F+    KN ++W+ MV G+ Q GD  +A+KL   M      P E TL  +++
Sbjct: 269 SLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVIN 328

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C  L    E +Q+H++A K G    L + +A+++ Y+KCGS+A A + F  V++PD+V 
Sbjct: 329 ACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVL 388

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           WTSII  Y  +G  +  + ++ KM    V P+ +    VL ACS    + +G +  +  I
Sbjct: 389 WTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQG-KQMHARI 447

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             Y    +    + L+ +  + G L + Y +   MP
Sbjct: 448 IKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMP 483



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 180/343 (52%), Gaps = 18/343 (5%)

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
           P  R++L D            L  C    +I  GR LH+ ILK G   + +V++  ++LY
Sbjct: 9   PQHRQLLQD------------LIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLY 56

Query: 208 GKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNCLGDG---AIAVF-NLMRLEGMKG 261
            K   +  A  +FD +    +D V WN +++ ++ N        AI++F  +MR   +  
Sbjct: 57  AKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIP 116

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           +  T + + ++   L     G+Q H + +K     DV V +SL++MY K G + DA ++F
Sbjct: 117 NAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLF 176

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D M  +N VSW TM+ G+  +    +AV++   M +     +E  L S+LS+  S     
Sbjct: 177 DRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVY 236

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQVH+ AIKNG+ A +S+ NAL+  Y+KCGS+  A++ F    + + +TW++++  YA
Sbjct: 237 TGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYA 296

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             G S +++++F KM S  V P     + V++ACS    V EG
Sbjct: 297 QGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEG 339



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           F P    L   L  C       + R +HA  +K G  + + + N  +N Y+K   ++ AL
Sbjct: 7   FPPQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHAL 66

Query: 420 QCFGSVKEPDL--VTWTSIIGAYAFHGLSKE---SIEVFEKML-SHAVRPDSIAFLEVLS 473
             F S+ + D   V+W S+I A++ +  S     +I +F +M+ ++ V P++     V S
Sbjct: 67  TLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFS 126

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           A S+   V  G +  ++ +       D    + L ++  + G + +A  L   MP
Sbjct: 127 AASNLSDVVAGKQAHSVAVKT-GCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMP 180


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/601 (32%), Positives = 330/601 (54%), Gaps = 33/601 (5%)

Query: 79  LQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI-----VT 131
           L+ G++ H+  +K G  +  +    N +L +Y +    DD + LF  +   ++     VT
Sbjct: 177 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVT 236

Query: 132 WNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           WNT++S ++  G  G        M+   VR D +TF S L AC Q + + +GR +H+++L
Sbjct: 237 WNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVL 296

Query: 190 K-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDG 246
           K      N FV+SALVD+Y     V  AR VFD V    R L LWN M+  YA   L + 
Sbjct: 297 KDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDED 356

Query: 247 AIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           A+ +F  M  E G+     T + ++ SC    +      +HG V+K+    +  V  +L+
Sbjct: 357 ALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALM 416

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFC--- 361
           D+YA+ G++D A  +F  +  ++VVSWNT++ G    G  R+A +L+R+M Q G F    
Sbjct: 417 DLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAA 476

Query: 362 --------------PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
                         P+ +TL ++L  C  L+     +++H YA+++ + + +++ +AL++
Sbjct: 477 TEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVD 536

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSI 466
            Y+KCG +A +   F  +   +++TW  +I AY  HGL  E+I +F++M+ S   +P+ +
Sbjct: 537 MYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEV 596

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            F+  L+ACSH G+V  GL  F  M  ++ + P  + + C  D+LGR G L EAY +++S
Sbjct: 597 TFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISS 656

Query: 527 M-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           M P E +     +F+GAC++H ++ L + AAE+L ELEP +  +Y L+ N+Y++   W  
Sbjct: 657 MEPGEQQVSAWSSFLGACRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEK 716

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
            + +R  MR     K PGCSWIE+ G IH F++ + +HP++  ++A +  ++  M +   
Sbjct: 717 SSEVRSRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRDQGY 776

Query: 646 S 646
           +
Sbjct: 777 T 777



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 199/404 (49%), Gaps = 16/404 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           A K +A    L   + +H   ++  L +    ++ N +L  Y +C        LFD M  
Sbjct: 63  AAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPS 122

Query: 127 RNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRR 183
           R+ VT+N+LI+   +           R MLL+   L   T  S+L AC   A+D+ +GR 
Sbjct: 123 RDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGRE 182

Query: 184 LHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD-----LVLWNVMVS 236
            H+F LK GF  G   F  +AL+ +Y + G V+DA+ +F  V   D     +V WN MVS
Sbjct: 183 AHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVS 242

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FD 295
               +     AI V   M   G++ D  TF+S + +C  L    LGR++H  V+K +   
Sbjct: 243 LLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLA 302

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLR 353
            +  VA++LVDMYA +  +  A  VFD + A  + +  WN M+ G+ Q G   +A++L  
Sbjct: 303 ANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFA 362

Query: 354 DM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            M  +    P E T+A +L SC           VH Y +K G+     ++NAL++ Y++ 
Sbjct: 363 RMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARL 422

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           G +  A   F +++  D+V+W ++I      G  +++ ++  +M
Sbjct: 423 GDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREM 466



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 193/416 (46%), Gaps = 40/416 (9%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDAR 217
           LD        ++      +   R +H   L+     G    VS+AL+  Y +CG +  A 
Sbjct: 55  LDRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAAL 114

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            +FD +  RD V +N +++   L      A+     M LEG     FT  S++ +C  L 
Sbjct: 115 ALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLA 174

Query: 278 SS-KLGRQIHGLVIKQSF-DLDVLVA-TSLVDMYAKNGNIDDACRVFDGMTAKN-----V 329
              +LGR+ H   +K  F D D   A  +L+ MYA+ G +DDA  +F  + A +     V
Sbjct: 175 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGV 234

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+WNTMV    Q+G   EA+++L DM+     PD VT AS L +C  L +    R++HAY
Sbjct: 235 VTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAY 294

Query: 390 AIKNGVQAFLS-IENALINAYSKCGSIAGALQCFGSVK--EPDLVTWTSIIGAYAFHGLS 446
            +K+   A  S + +AL++ Y+    +  A   F  V   E  L  W ++I  YA  GL 
Sbjct: 295 VLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLD 354

Query: 447 KESIEVFEKMLSHA-VRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISD 494
           ++++E+F +M + A V P       VL +C+           HG +V  G+       +D
Sbjct: 355 EDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGM-------AD 407

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGSI 549
              + ++     L DL  R+G +  A  + A+  IEPR   +    I  C V G I
Sbjct: 408 NPFVQNA-----LMDLYARLGDMDAARWIFAT--IEPRDVVSWNTLITGCVVQGHI 456



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 49/275 (17%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGV--QAFLSIENALINAYSKCGSIAGALQ 420
           D   L     S  +L      R +H  A+++ +      ++ NAL+ AY++CG +  AL 
Sbjct: 56  DRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALA 115

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F ++   D VT+ S+I A         +++    ML       S   + VL ACSH   
Sbjct: 116 LFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSH--- 172

Query: 481 VSEGLRY----FNLMISDYHILPDSEH-YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           ++E LR         + +  +  D    +  L  +  R+GL+ +A  L  S         
Sbjct: 173 LAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGS--------- 223

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
               +GA  V G  G+  W                 +VS +  S RC   +  L  M+  
Sbjct: 224 ----VGATDVPGG-GVVTW---------------NTMVSLLVQSGRCGEAIEVLYDMVAR 263

Query: 596 NCD-------HKVPGCSWIE---IAGEIHTFVSSD 620
                       +P CS +E   +  E+H +V  D
Sbjct: 264 GVRPDGVTFASALPACSQLEMLSLGREMHAYVLKD 298


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 205/584 (35%), Positives = 322/584 (55%), Gaps = 15/584 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+Q+HS I+K+G    +   + +L +Y KC+   D   +F  +  RN V+WN LI+G
Sbjct: 118 LDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAG 177

Query: 139 IINCGGNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G + T ++  R M  + VRLD  TF+ LL    +    ++  +LH  I+K G   +
Sbjct: 178 FVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFD 237

Query: 197 CFVSSALVDLYGKCGFVEDARRVFD-EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
             V +A +  Y +CG +EDA RVFD  V  RDLV WN M++ +  +   + A  +F  M+
Sbjct: 238 NTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQ 297

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY--AKNGN 313
             G + D +T+++++++C    +   G+ +HGLVIK+  +  V +  +++ MY  + + +
Sbjct: 298 QFGFEPDIYTYTTIISACSHKDN---GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNS 354

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA  VF  M +K+ VSWN+++ GF Q G    A+KL   M       D    +++L S
Sbjct: 355 MEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRS 414

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C  L+     +Q+H   +K+G ++   + ++LI  YSKCG I  A + F    +   +TW
Sbjct: 415 CSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITW 474

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            SI+ AYA HG    ++ +F +M    V+ D I F+  L+ACSH GLV +G      M S
Sbjct: 475 NSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMAS 534

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           DY I P  EHY C  DL GR G L EA  L+ SMP +P +      +GAC+  G I LA 
Sbjct: 535 DYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAA 594

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             A  LLELEP +   Y ++SN+Y   + W + A + ++MR+    KVPG SWIE+  E+
Sbjct: 595 QVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEV 654

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEE----NNVSGHCNVLD 653
           H F++ DR H     +Y +L     LME+    ++V+G  ++LD
Sbjct: 655 HAFIADDRCHSHFEEIYQILEQ---LMEDIKWLDSVAGSDSLLD 695



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 210/398 (52%), Gaps = 10/398 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKA--FDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           H   +KLG    +   N +L  Y +C +        LFDEM  R+ VTWNT+ISG +N G
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
             G+    ++ M    +  D  TF S+L+    A  ++VG+++HS I+K+G+  + +  S
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D+Y KC  V DA  VF  +  R+ V WN +++ + L    D A  +   M  EG++ 
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  TFS L+         KL  Q+H  +IK     D  V  + +  Y++ G+++DA RVF
Sbjct: 202 DDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVF 261

Query: 322 DG-MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           DG + ++++V+WN+M+  F  +     A KL  DM Q  F PD  T  +I+S+C   S  
Sbjct: 262 DGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISAC---SHK 318

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAY--SKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + +H   IK G++  + I NA+I  Y  S   S+  AL  F S++  D V+W SI+ 
Sbjct: 319 DNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILT 378

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            ++  G S+ ++++F  M    V  D  AF  VL +CS
Sbjct: 379 GFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCS 416



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 155/296 (52%), Gaps = 3/296 (1%)

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKC--GFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           H   +K+G   + + ++ ++  Y +C  G +  A  +FDE+  RD V WN M+S Y  + 
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A  ++  M+  G+  D +TF S++          +G+Q+H L++K  ++  V   +
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK   + DA  VF  +  +N VSWN ++ GF   GD   A  LLR M +     
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D+ T + +L+          T Q+H   IK+GVQ   ++ NA I +YS+CGS+  A + F
Sbjct: 202 DDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVF 261

Query: 423 -GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            G+V   DLVTW S++ A+  H   + + ++F  M      PD   +  ++SACSH
Sbjct: 262 DGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSH 317



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 197/383 (51%), Gaps = 14/383 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD-EM 124
           +S  L +  +  F +   QLH  I+K G+    ++ N  +  Y +C + +D E++FD  +
Sbjct: 206 FSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAV 265

Query: 125 RVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL----DHITFNSLLRACVQADDIEV 180
             R++VTWN++++  +      T +  ++ LD  +     D  T+ +++ AC   D+   
Sbjct: 266 GSRDLVTWNSMLAAFLAHDRKETAF--KLFLDMQQFGFEPDIYTYTTIISACSHKDN--- 320

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLY--GKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           G+ LH  ++K G      + +A++ +Y       +EDA  VF  +  +D V WN +++ +
Sbjct: 321 GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGF 380

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           +     + A+ +F  MR   +  D++ FS+++ SC  L + +LG+QIH L +K  F+ + 
Sbjct: 381 SQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESND 440

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            VA+SL+ MY+K G I+DA + F+     + ++WN+++  + Q+G G  A+ L   M   
Sbjct: 441 FVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDK 500

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               D +T  + L++C  + +  + R  + + A   G+   +      ++ + + G +  
Sbjct: 501 KVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDE 560

Query: 418 ALQCFGSVK-EPDLVTWTSIIGA 439
           A     S+  +PD + W +++GA
Sbjct: 561 AKALIESMPFDPDAMVWKTLLGA 583



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 5/200 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L+  +    LQ G+Q+H   +K G  +   + + ++ +Y KC   +D  K F+
Sbjct: 405 HYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFE 464

Query: 123 EMRVRNIVTWNTLISGIINCG-GNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +    + +TWN+++      G G+V    F +M    V++DHITF + L AC     +E 
Sbjct: 465 KTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQ 524

Query: 181 GRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SC 237
           GR  L S     G        +  VDL+G+ G++++A+ + + +    D ++W  ++ +C
Sbjct: 525 GRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGAC 584

Query: 238 YALNCLGDGAIAVFNLMRLE 257
            A   +   A    +L+ LE
Sbjct: 585 RACGDIELAAQVASHLLELE 604



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 10/174 (5%)

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKC--GSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
            H   IK G  A +   N +++ Y++C  G +  A   F  +   D VTW ++I  Y   
Sbjct: 21  THCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNS 80

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS---DYHILPD 500
           G    + E+++ M S  + PD+  F  +L   +    +  G +  +L++    + H+   
Sbjct: 81  GSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAG 140

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           S     L D+  +   + +A+ +   +P    S +  A I    + G    A W
Sbjct: 141 S----ALLDMYAKCERVRDAFMVFKCIP-RRNSVSWNALIAGFVLEGDHDTAFW 189


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 316/602 (52%), Gaps = 71/602 (11%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDM-------------- 117
           L  GK LHS  +K  +       N  + +Y KC       KAF D+              
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 118 ----------EKLFDEMRVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDH 162
                      +LFD++   ++V++NTLIS   +CG            R M LD   +D 
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD---MDG 140

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
            T ++++ AC   DD+ +  +LHS  +  GF     V++AL+  YGK G ++DA+RVF  
Sbjct: 141 FTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYG 198

Query: 223 VL-CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           +   RD V WN M+  Y  +  G  A+ +F  M   G+  D FT +S++ +   L     
Sbjct: 199 MGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSG 258

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           G Q HG +IK  F  +  V + L+D+Y+K  G + D  +VF+ +T  ++V WNTMV G+ 
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 341 QNGDGRE-AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           QN +  E A++  R M    + P++ +   ++S+C +LS   + +Q+H+ A+K       
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALK------- 371

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
                               + F  + E + V+  S+I  YA HG+  ES+ +F+ ML  
Sbjct: 372 --------------------RLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLER 411

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P SI F+ VLSAC+H G V EG  YFN+M   ++I P++EHY+C+ DLLGR G L E
Sbjct: 412 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 471

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A +L+A MP  P S    + +GAC+ HG+I LA  AA ++L+LEPS    Y ++SN+YAS
Sbjct: 472 AENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYAS 531

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W +VA +RK MRD    K PGCSWIE+   IH FV+ D SHP    +Y  L  + G 
Sbjct: 532 AGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGK 591

Query: 640 ME 641
           M+
Sbjct: 592 MK 593


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 190/578 (32%), Positives = 316/578 (54%), Gaps = 11/578 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A  G L+ G+Q+HS  ++ G      + + ++ +Y +C +    +++FD M   +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V + +LIS     G          +ML   ++ +  T  ++L AC +     +G+++H 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHG 235

Query: 187 FILK-VGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           +++K +G    + + S+AL+D Y + G  + A+ VFD + C+++V W  M+  Y  +   
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ VF  M  EG+  + F  S ++ +CG++G   LGRQ+H   IK     D+ V+ +L
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNAL 352

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MY + G +++   + + +   ++VSW T +    QNG G +A+ LL  M    F P+ 
Sbjct: 353 LSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNG 412

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
              +S+LSSC  ++   +  Q H  A+K G  + +   NALIN YSKCG +  A   F  
Sbjct: 413 YAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDV 472

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D+ +W S+I  +A HG + +++EVF KM S+ ++PD   FL VL  C+H G+V EG
Sbjct: 473 MHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEG 532

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             +F LMI  Y   P   HY C+ D+LGR G   EA  ++  MP EP +      + +CK
Sbjct: 533 ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCK 592

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H ++ + K AA++L+EL      +Y L+SN+YA    W D  ++R+ M +    K  GC
Sbjct: 593 LHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGC 652

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           SWIEI  E+HTF S D SHP +  +Y ML  +  +M++
Sbjct: 653 SWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 690



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 214/399 (53%), Gaps = 15/399 (3%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDN 157
           L+ + L+  VK     D   LFD M  +N+V W +++SG    G        F  M+   
Sbjct: 50  LECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESG 109

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V  +    N+ L AC     +  G ++HS  ++ GF  + ++ S L+++Y +CG +  A+
Sbjct: 110 VAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAK 169

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL--EGMKGDYFTFSSLVNSCGT 275
            VFD +   D+V +  ++S +  N  G+  +A   L+++  +G+K +  T ++++ +C  
Sbjct: 170 EVFDRMDSPDVVGYTSLISAFCRN--GEFELAAEALIQMLKQGLKPNEHTMTTILTACPR 227

Query: 276 LGSSKLGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
           +    LG+QIHG +IK+       V  +T+L+D Y++NG    A  VFD +  KNVVSW 
Sbjct: 228 V----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWC 283

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +M+  + ++G   EA+++  DM+     P+E  L+ +L +CGS+ +    RQ+H  AIK+
Sbjct: 284 SMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLG---RQLHCSAIKH 340

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
            +   + + NAL++ Y + G +         ++ PDLV+WT+ I A   +G  +++I + 
Sbjct: 341 DLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALL 400

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            +M S    P+  AF  VLS+C+    + +G+++  L +
Sbjct: 401 CQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLAL 439



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 198/400 (49%), Gaps = 20/400 (5%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           K G + DA  +FD +  +++V W  ++S Y  N   + A+A+F  M   G+  + F  ++
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            + +C  LG+ + G Q+H L ++  F  D  + + L++MY++ G++  A  VFD M + +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VV + +++  F +NG+   A + L  ML+    P+E T+ +IL++C  +      +Q+H 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHG 235

Query: 389 YAIKN-GVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           Y IK  G+++  +    ALI+ YS+ G    A   F S+   ++V+W S++  Y   G  
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           +E+++VF  M+S  V P+  A   VL AC   GL     R  +     + ++ D      
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIGLG----RQLHCSAIKHDLITDIRVSNA 351

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL--EP 564
           L  + GR GL+ E    L +M  +  +  L ++  A   +   G  + A   L ++  E 
Sbjct: 352 LLSMYGRTGLVEE----LEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 407

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
             P  YA  S + +      DVA L + M+ +C     GC
Sbjct: 408 FTPNGYAFSSVLSSCA----DVASLDQGMQFHCLALKLGC 443



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 34/288 (11%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV++    ++   K+G + DA  +FD M  KNVV+W +++ G+ +NG    A+ +  DM+
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    P++    + L +C  L       QVH+ A++ G      I + LI  YS+CGS+ 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  +  PD+V +TS+I A+  +G  + + E   +ML   ++P+      +L+AC 
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 226

Query: 477 -------HGGLVSE-GLR----YFNLMISDYH----------ILPDSEH------YTCLT 508
                  HG L+ + GLR    Y +  + D++           + DS H      +  + 
Sbjct: 227 RVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMM 286

Query: 509 DLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAK 553
            L  R G L EA  +   M    ++P    L   +GAC   GSIGL +
Sbjct: 287 QLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLGR 331



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A    L QG Q H   +KLG  +++   N ++++Y KC         FD M 
Sbjct: 415 FSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMH 474

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++ +WN+LI G    G        F +M  + ++ D  TF  +L  C  +  +E G  
Sbjct: 475 THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGEL 534

Query: 184 LHSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYAL 240
               ++ +  F       + ++D+ G+ G  ++A R+ +++    D ++W  ++ SC   
Sbjct: 535 FFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLH 594

Query: 241 NCLGDGAIAVFNLMRL 256
             L  G +A   LM L
Sbjct: 595 RNLDIGKLAADRLMEL 610


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 302/547 (55%), Gaps = 3/547 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G   H +I+KLG   + ++ N ++  Y K     D   +F+ M  ++ ++WN++ISG 
Sbjct: 434 RDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGC 493

Query: 140 INCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G N      F RM      LD +T  S+L AC Q+     GR +H + +K G     
Sbjct: 494 SSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGET 553

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            +++AL+D+Y  C   +   ++F  +  +++V W  M++ Y    L D    +   M L+
Sbjct: 554 SLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLD 613

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G++ D F  +S +++     S K G+ +HG  I+   +  + VA +L++MY K  N+++A
Sbjct: 614 GIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEA 673

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +FD +T K+V+SWNT++ G+ +N    E+  L  DML   F P+ VT+  IL +  S+
Sbjct: 674 RLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLL-QFRPNAVTMTCILPAAASI 732

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S     R++HAYA++ G        NAL++ Y KCG++  A   F  + + +L++WT +I
Sbjct: 733 SSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 792

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             Y  HG  K +I +FE+M    + PD+ +F  +L AC H GL +EG R+F  M  +Y I
Sbjct: 793 AGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKI 852

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  +HYTC+ DLL R G L EA + + SMPIEP S    + +  C++H ++ LA+  A+
Sbjct: 853 EPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVAD 912

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           K+ +LEP     Y L++N+YA    W  V +L+  +      +  G SWIE+  ++H F+
Sbjct: 913 KVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFI 972

Query: 618 SSDRSHP 624
           + +R+HP
Sbjct: 973 ADNRNHP 979



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 210/418 (50%), Gaps = 13/418 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +  G L +G+ +H  + KLGL    ++ N ++ VY +C   +D  ++FD M  R+ 
Sbjct: 211 LKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDA 270

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WN++I G  + G  G     F +M      +  +T  S+L AC       +G+ +H +
Sbjct: 271 ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY 330

Query: 188 ILKVG--FGLNCFVS--------SALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS 236
            +K G  +GL+   S        S LV +Y KCG +  ARRVFD +  +  V +WN+++ 
Sbjct: 331 SVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMG 390

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            YA     + ++++F  M   G+  D    S L+     L  ++ G   HG ++K  F  
Sbjct: 391 GYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGA 450

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
              V  +L+  YAK+  I DA  VF+ M  ++ +SWN+++ G   NG   EA++L   M 
Sbjct: 451 QCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMW 510

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                 D VTL S+L +C         R VH Y++K G+    S+ NAL++ YS C    
Sbjct: 511 TQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQ 570

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
              Q F S+ + ++V+WT++I +Y   GL  +   + ++M+   +RPD  A    L A
Sbjct: 571 STNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHA 628



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 196/393 (49%), Gaps = 15/393 (3%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLISGIINCGG--NVTPYFRRMLL 155
           L  +++  Y+KC    +   +FD M  +  ++  W +L+S     G        FR+M  
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             V  D    + +L+       +  G  +H  + K+G G  C V++AL+ +Y +CG +ED
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED 257

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A RVFD +  RD + WN M+     N     A+ +F+ M  +G +    T  S++ +C  
Sbjct: 258 AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG 317

Query: 276 LGSSKLGRQIHGLVIK----------QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           LG   +G+ +HG  +K          QS   D  + + LV MY K G++  A RVFD M+
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMS 377

Query: 326 AK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
           +K NV  WN ++ G+ + G+  E++ L   M +    PDE  ++ +L     LS + +  
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGL 437

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
             H Y +K G  A  ++ NALI+ Y+K   I  A+  F  +   D ++W S+I   + +G
Sbjct: 438 VAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNG 497

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           L+ E+IE+F +M +     DS+  L VL AC+ 
Sbjct: 498 LNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 213/468 (45%), Gaps = 15/468 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGL----------CNKLSLQNQVLHVYVKCKAFDDMEK 119
           L   A  G+   GK +H + +K GL           +  +L ++++ +YVKC       +
Sbjct: 312 LPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARR 371

Query: 120 LFDEMRVR-NIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           +FD M  + N+  WN ++ G    G        F +M    +  D    + LL+      
Sbjct: 372 VFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLS 431

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
               G   H +I+K+GFG  C V +AL+  Y K   + DA  VF+ +  +D + WN ++S
Sbjct: 432 CARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVIS 491

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
             + N L   AI +F  M  +G + D  T  S++ +C        GR +HG  +K     
Sbjct: 492 GCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIG 551

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  +A +L+DMY+   +     ++F  M  KNVVSW  M+  + + G   +   LL++M+
Sbjct: 552 ETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMV 611

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PD   + S L +        + + VH Y I+NG++  L + NAL+  Y KC ++ 
Sbjct: 612 LDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVE 671

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  V   D+++W ++IG Y+ +    ES  +F  ML    RP+++    +L A +
Sbjct: 672 EARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAA 730

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
               +  G R  +        L DS     L D+  + G L+ A  L 
Sbjct: 731 SISSLERG-REIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLF 777



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 140/249 (56%), Gaps = 4/249 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QGK +H + ++ G+   L + N ++ +YVKC+  ++   +FD +  +++++WNTLI G
Sbjct: 635 LKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGG 694

Query: 139 II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               N        F  MLL   R + +T   +L A      +E GR +H++ L+ GF  +
Sbjct: 695 YSRNNFPNESFSLFSDMLL-QFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLED 753

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            + S+ALVD+Y KCG +  AR +FD +  ++L+ W +M++ Y ++  G  AIA+F  MR 
Sbjct: 754 SYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRG 813

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNID 315
            G++ D  +FS+++ +C   G +  GR+    + K+   +  +   T +VD+ ++ G++ 
Sbjct: 814 SGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLK 873

Query: 316 DACRVFDGM 324
           +A    + M
Sbjct: 874 EALEFIESM 882



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 173/355 (48%), Gaps = 22/355 (6%)

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI----LKVGFGLNCFVSSALVDLY 207
           R+L  +  +D  ++  +++ C +   +E  +R H+ I         G    +   LV  Y
Sbjct: 87  RLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAY 146

Query: 208 GKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265
            KCG + +AR VFD +  +  D+ +W  ++S YA       A+++F  M+  G+  D   
Sbjct: 147 LKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHA 206

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
            S ++    +LGS   G  IHGL+ K        VA +L+ +Y++ G ++DA RVFD M 
Sbjct: 207 VSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMH 266

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            ++ +SWN+M+ G   NG    AV L   M         VT+ S+L +C  L      + 
Sbjct: 267 PRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKA 326

Query: 386 VHAYAIKNG-------VQAFL---SIENALINAYSKCGSIAGALQCFGSVKEPDLV-TWT 434
           VH Y++K+G       VQ+ +   ++ + L+  Y KCG +A A + F ++     V  W 
Sbjct: 327 VHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWN 386

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS-----ACSHGGLVSEG 484
            I+G YA  G  +ES+ +F +M    + PD  A   +L      +C+  GLV+ G
Sbjct: 387 LIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG 441


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 190/578 (32%), Positives = 316/578 (54%), Gaps = 11/578 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A  G L+ G+Q+HS  ++ G      + + ++ +Y +C +    +++FD M   +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V + +LIS     G          +ML   ++ +  T  ++L AC +     +G+++H 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHG 235

Query: 187 FILK-VGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           +++K +G    + + S+AL+D Y + G  + A+ VFD + C+++V W  M+  Y  +   
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ VF  M  EG+  + F  S ++ +CG++G   LGRQ+H   IK     D+ V+ +L
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNAL 352

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MY + G +++   + + +   ++VSW T +    QNG G +A+ LL  M    F P+ 
Sbjct: 353 LSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNG 412

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
              +S+LSSC  ++   +  Q H  A+K G  + +   NALIN YSKCG +  A   F  
Sbjct: 413 YAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDV 472

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D+ +W S+I  +A HG + +++EVF KM S+ ++PD   FL VL  C+H G+V EG
Sbjct: 473 MHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEG 532

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             +F LMI  Y   P   HY C+ D+LGR G   EA  ++  MP EP +      + +CK
Sbjct: 533 ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCK 592

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H ++ + K AA++L+EL      +Y L+SN+YA    W D  ++R+ M +    K  GC
Sbjct: 593 LHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGC 652

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           SWIEI  E+HTF S D SHP +  +Y ML  +  +M++
Sbjct: 653 SWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 690



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 209/397 (52%), Gaps = 11/397 (2%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDN 157
           L+ + L+  VK     D   LFD M  +N+V W +++SG    G        F  M+   
Sbjct: 50  LECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESG 109

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V  +    N+ L AC     +  G ++HS  ++ GF  + ++ S L+++Y +CG +  A+
Sbjct: 110 VAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAK 169

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            VFD +   D+V +  ++S +  N   + A      M  +G+K +  T ++++ +C  + 
Sbjct: 170 EVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV- 228

Query: 278 SSKLGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
              LG+QIHG +IK+       V  +T+L+D Y++NG    A  VFD +  KNVVSW +M
Sbjct: 229 ---LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSM 285

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +  + ++G   EA+++  DM+     P+E  L+ +L +CGS+ +    RQ+H  AIK+ +
Sbjct: 286 MQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLG---RQLHCSAIKHDL 342

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              + + NAL++ Y + G +         ++ PDLV+WT+ I A   +G  +++I +  +
Sbjct: 343 ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQ 402

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           M S    P+  AF  VLS+C+    + +G+++  L +
Sbjct: 403 MHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLAL 439



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 201/400 (50%), Gaps = 20/400 (5%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           K G + DA  +FD +  +++V W  ++S Y  N   + A+A+F  M   G+  + F  ++
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            + +C  LG+ + G Q+H L ++  F  D  + + L++MY++ G++  A  VFD M + +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VV + +++  F +NG+   A + L  ML+    P+E T+ +IL++C  +      +Q+H 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHG 235

Query: 389 YAIKN-GVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           Y IK  G+++  +    ALI+ YS+ G    A   F S+   ++V+W S++  Y   G  
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           +E+++VF  M+S  V P+  A   VL AC   GL     R  +     + ++ D      
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIGLG----RQLHCSAIKHDLITDIRVSNA 351

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL--EP 564
           L  + GR GL+ E    L +M  +  +  L ++  A   +   G  + A   L ++  E 
Sbjct: 352 LLSMYGRTGLVEE----LEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 407

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
             P  YA  S+V +S  C  DVA L + M+ +C     GC
Sbjct: 408 FTPNGYAF-SSVLSS--C-ADVASLDQGMQFHCLALKLGC 443



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 34/288 (11%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV++    ++   K+G + DA  +FD M  KNVV+W +++ G+ +NG    A+ +  DM+
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    P++    + L +C  L       QVH+ A++ G      I + LI  YS+CGS+ 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  +  PD+V +TS+I A+  +G  + + E   +ML   ++P+      +L+AC 
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 226

Query: 477 -------HGGLVSE-GLR----YFNLMISDYH----------ILPDSEH------YTCLT 508
                  HG L+ + GLR    Y +  + D++           + DS H      +  + 
Sbjct: 227 RVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMM 286

Query: 509 DLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAK 553
            L  R G L EA  +   M    ++P    L   +GAC   GSIGL +
Sbjct: 287 QLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLGR 331



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A    L QG Q H   +KLG  +++   N ++++Y KC         FD M 
Sbjct: 415 FSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMH 474

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++ +WN+LI G    G        F +M  + ++ D  TF  +L  C  +  +E G  
Sbjct: 475 THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGEL 534

Query: 184 LHSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYAL 240
               ++ +  F       + ++D+ G+ G  ++A R+ +++    D ++W  ++ SC   
Sbjct: 535 FFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLH 594

Query: 241 NCLGDGAIAVFNLMRL 256
             L  G +A   LM L
Sbjct: 595 RNLDIGKLAADRLMEL 610


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 307/558 (55%), Gaps = 19/558 (3%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H H+MK G  +   + + +++VY KC   +D  ++F+ M  RN+V W TL+ G +    
Sbjct: 86  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQ--- 142

Query: 145 NVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           N  P      F+ ML         T +++L AC     +++G + H++I+K     +  V
Sbjct: 143 NSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSV 202

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            SAL  LY KCG +EDA + F  +  ++++ W   VS    N      + +F  M  E +
Sbjct: 203 GSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDI 262

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K + FT +S ++ C  + S +LG Q+  L IK  ++ ++ V  SL+ +Y K+G I +A R
Sbjct: 263 KPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHR 322

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGD-----------GREAVKLLRDMLQGSFCPDEVTLA 368
            F+ M   ++V+WN M+ G  Q  +           G EA+K+   + Q    PD  TL+
Sbjct: 323 FFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLS 382

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+LS C  +    +  Q+HA  IK G  + + +  +LI+ Y+KCGSI  A + F  +   
Sbjct: 383 SVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTR 442

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
            ++ WTS+I  ++ HG+S++++ +FE M    VRP+++ F+ VLSACSH G+VS+ L YF
Sbjct: 443 TMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYF 502

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            +M   Y I P  +HY C+ D+  R+G L +A + +  M  EP       FI  C+ HG+
Sbjct: 503 EIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGN 562

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           + L  +A+E+LL L+P  P  Y L+ N+Y S   + DV+R+RKMM      K+   SWI 
Sbjct: 563 LELGFYASEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWIS 622

Query: 609 IAGEIHTFVSSDRSHPQA 626
           I  ++++F ++D++HP +
Sbjct: 623 IKDKVYSFKTNDKTHPPS 640



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 198/398 (49%), Gaps = 21/398 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G Q H++I+K  L    S+ + +  +Y KC   +D  K F  +R +N+++W + +S 
Sbjct: 181 LKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSA 240

Query: 139 IINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
              CG N  P      F  M+ ++++ +  T  S L  C +   +E+G ++ S  +K G+
Sbjct: 241 ---CGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGY 297

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC----------- 242
             N  V ++L+ LY K GF+ +A R F+ +    +V WN M++ +A              
Sbjct: 298 ESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQ 357

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G  A+ +F+ +   GMK D FT SS+++ C  + + + G QIH   IK  F  DV+V+T
Sbjct: 358 RGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVST 417

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+ MY K G+I+ A + F  M+ + +++W +M+ GF Q+G  ++A+ +  DM      P
Sbjct: 418 SLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRP 477

Query: 363 DEVTLASILSSCGSLS-ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           + VT   +LS+C     +S           K  ++  +     +++ + + G +  AL  
Sbjct: 478 NTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNF 537

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
              +  EP    W++ I     HG  +      E++LS
Sbjct: 538 IKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLS 575



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 173/335 (51%), Gaps = 11/335 (3%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           + + +  LL+ C+        + +H  ++K G   N FV S LV++Y KCG +EDARRVF
Sbjct: 63  EKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVF 122

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  R++V W  ++  +  N     AI VF  M   G     +T S+++++C +L S K
Sbjct: 123 ENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLK 182

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG Q H  +IK   D D  V ++L  +Y+K G ++DA + F  +  KNV+SW + V   G
Sbjct: 183 LGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACG 242

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
            NG   + ++L  +M+     P+E TL S LS C  +       QV +  IK G ++ L 
Sbjct: 243 DNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLR 302

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA-FHGLSK----------ES 449
           + N+L+  Y K G I  A + F  + +  +VTW ++I  +A    L+K          E+
Sbjct: 303 VRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEA 362

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +++F K+    ++PD      VLS CS    + +G
Sbjct: 363 LKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQG 397



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 50/272 (18%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L V ++   ++QG+Q+H+  +K G  + + +   ++ +Y KC + +   K F EM  
Sbjct: 382 SSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMST 441

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R ++ W ++I+G    G        F  M L  VR + +TF  +L AC  A    V + L
Sbjct: 442 RTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAG--MVSQAL 499

Query: 185 HSF-ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + F I++  + +   +     +VD++ + G +E A                         
Sbjct: 500 NYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQA------------------------- 534

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG----RQIHGLVIKQSFDLD 297
                     N ++    +   F +S+ +  C + G+ +LG     Q+  L  K     D
Sbjct: 535 ---------LNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPK-----D 580

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
                 L++MY      DD  RV   M  + V
Sbjct: 581 PETYVLLLNMYLSADRFDDVSRVRKMMEVEKV 612



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 7/220 (3%)

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +G+   +++    +L  C        T+ VH + +K G      + + L+N Y+KCG++ 
Sbjct: 57  EGTEEEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNME 116

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F ++   ++V WT+++  +  +   K +I VF++ML     P       VL ACS
Sbjct: 117 DARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACS 176

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
               +  G + F+  I  YH+  D+   + L  L  + G L +A    + +    R   +
Sbjct: 177 SLQSLKLGDQ-FHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRI----REKNV 231

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLEL--EPSKPVNYALVS 574
            ++  A    G  G         +E+  E  KP  + L S
Sbjct: 232 ISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTS 271


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 322/578 (55%), Gaps = 5/578 (0%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G + +        +   +K  A+ G L +G+  H  ++KLGL + +   N ++  Y K  
Sbjct: 97  GMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLG 156

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCG-GNVTPYFRRMLLDNVRLDHITFN---SL 168
             +D E++FD M VR+IVTWNT++ G ++ G G++     + + D + + H +     +L
Sbjct: 157 LVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAAL 216

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
              C++   ++ G+ +H ++++ G   +  V ++L+D+Y KCG V  AR VF  +  R +
Sbjct: 217 AACCLEVSSMQ-GKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTV 275

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN M+  YALN   D A   F  MR EG++ +  T  +L+ +C    SS  GR +HG 
Sbjct: 276 VTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGY 335

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V+++ F   V++ T+L++MY K G ++ + ++F  +  K +VSWN M+  +       EA
Sbjct: 336 VVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEA 395

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + L  ++L     PD  T+++++ +   L      RQ+H+Y I  G      I NA+++ 
Sbjct: 396 ITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHM 455

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y++ G +  + + F  +   D+++W ++I  YA HG  K ++E+F++M  + ++P+   F
Sbjct: 456 YARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTF 515

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VL+ACS  GLV EG  +FNLM+ +Y ++P  EHY C+TDLLGR G L E    + SMP
Sbjct: 516 VSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMP 575

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           I+P S   G+ + A +    I +A++AAE++ +LE      Y ++S++YA    W DV R
Sbjct: 576 IDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVER 635

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
           +R +M++    +    S +E+     +F + D SH Q+
Sbjct: 636 VRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQS 673



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 168/327 (51%), Gaps = 3/327 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           +R ML D  R D  TF  +++ C +   ++ GR  H  ++K+G   + +  ++LV  Y K
Sbjct: 95  YRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAK 154

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR--LEGMKGDYFTFS 267
            G VEDA RVFD +  RD+V WN MV  Y  N LG  A+A F  M   LE ++ D     
Sbjct: 155 LGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALE-VQHDSVGII 213

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           + + +C    SS  G++IHG VI+   + D+ V TSL+DMY K G +  A  VF  M  +
Sbjct: 214 AALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
            VV+WN M+ G+  N    EA      M       + VT  ++L++C     S   R VH
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
            Y ++      + +E AL+  Y K G +  + + FG +    LV+W ++I AY +  +  
Sbjct: 334 GYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYT 393

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           E+I +F ++L+  + PD      V+ A
Sbjct: 394 EAITLFLELLNQPLYPDYFTMSTVVPA 420



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 164/317 (51%), Gaps = 2/317 (0%)

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           S +LV      G +++A      V   D  L NVM+  +A   L  GA+A +  M  +G 
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D FTF  +V  C  LG    GR  HG+VIK   + DV    SLV  YAK G ++DA R
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAER 163

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLS 378
           VFDGM  +++V+WNTMV G+  NG G  A+   ++M        D V + + L++C    
Sbjct: 164 VFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEV 223

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
            S + +++H Y I++G++  + +  +L++ Y KCG +A A   F ++    +VTW  +IG
Sbjct: 224 SSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIG 283

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            YA +    E+ + F +M +  ++ + +  + +L+AC+       G R  +  +     L
Sbjct: 284 GYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYG-RSVHGYVVRRQFL 342

Query: 499 PDSEHYTCLTDLLGRVG 515
           P     T L ++ G+VG
Sbjct: 343 PHVVLETALLEMYGKVG 359


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 299/530 (56%), Gaps = 8/530 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNV 158
           N ++ +Y KC+      K+FD M  RN+V+W+ L+SG +  G   G+++  F  M    +
Sbjct: 416 NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLS-LFSEMGRQGI 474

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
             +  TF++ L+AC   + +E G ++H F LK+GF +   V ++LVD+Y KCG + +A +
Sbjct: 475 YPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 534

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK--GDYFTFSSLVNSCGTL 276
           VF  ++ R L+ WN M++ +     G  A+  F +M+   +K   D FT +SL+ +C + 
Sbjct: 535 VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 594

Query: 277 GSSKLGRQIHGLVIKQSFDL--DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G    G+QIHG +++  F       +  SLVD+Y K G +  A + FD +  K ++SW++
Sbjct: 595 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSS 654

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           +++G+ Q G+  EA+ L + + + +   D   L+SI+      ++  + +Q+ A A+K  
Sbjct: 655 LILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLP 714

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
                S+ N++++ Y KCG +  A +CF  ++  D+++WT +I  Y  HGL K+S+ +F 
Sbjct: 715 SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFY 774

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +ML H + PD + +L VLSACSH G++ EG   F+ ++  + I P  EHY C+ DLLGR 
Sbjct: 775 EMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRA 834

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G L EA  L+ +MPI+P        +  C+VHG I L K   + LL ++   P NY ++S
Sbjct: 835 GRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMS 894

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           N+Y     W +    R++       K  G SW+EI  E+H F S + SHP
Sbjct: 895 NLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHP 944



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 206/387 (53%), Gaps = 8/387 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK       L++G Q+H   +K+G    + + N ++ +Y KC   ++ EK+F  + 
Sbjct: 481 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIV 540

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVG 181
            R++++WN +I+G ++   G      F  M   N+  R D  T  SLL+AC     I  G
Sbjct: 541 DRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 600

Query: 182 RRLHSFILKVGFGL--NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +++H F+++ GF    +  ++ +LVDLY KCG++  AR+ FD++  + ++ W+ ++  YA
Sbjct: 601 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 660

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                  A+ +F  ++    + D F  SS++         + G+Q+  L +K    L+  
Sbjct: 661 QEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETS 720

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  S+VDMY K G +D+A + F  M  K+V+SW  ++ G+G++G G+++V++  +ML+ +
Sbjct: 721 VLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN 780

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGA 418
             PDEV   ++LS+C    +  E  ++ +  ++ +G++  +     +++   + G +  A
Sbjct: 781 IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEA 840

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHG 444
                ++  +P++  W +++     HG
Sbjct: 841 KHLIDTMPIKPNVGIWQTLLSLCRVHG 867



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 196/366 (53%), Gaps = 25/366 (6%)

Query: 186 SFILKVGFG--------------LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           +F ++V FG              LN   S+ L+D+Y KC     A +VFD +  R++V W
Sbjct: 387 AFYIRVSFGPDYTDDPESETKPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSW 446

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           + ++S + LN    G++++F+ M  +G+  + FTFS+ + +CG L + + G QIHG  +K
Sbjct: 447 SALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLK 506

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
             F++ V V  SLVDMY+K G I++A +VF  +  ++++SWN M+ GF   G G +A+  
Sbjct: 507 IGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDT 566

Query: 352 LRDMLQGSFC--PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ--AFLSIENALIN 407
              M + +    PDE TL S+L +C S  +    +Q+H + +++G    +  +I  +L++
Sbjct: 567 FGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVD 626

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y KCG +  A + F  +KE  +++W+S+I  YA  G   E++ +F+++     + DS A
Sbjct: 627 LYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFA 686

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT---DLLGRVGLLVEAYDLL 524
              ++   +   L+ +G +   L +     LP     + L    D+  + GL+ EA    
Sbjct: 687 LSSIIGVFADFALLRQGKQMQALAVK----LPSGLETSVLNSVVDMYLKCGLVDEAEKCF 742

Query: 525 ASMPIE 530
           A M ++
Sbjct: 743 AEMQLK 748


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 318/581 (54%), Gaps = 6/581 (1%)

Query: 59  THSAHSFYSQALKV----SAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           T+ +   +S+AL++    S    F  Q K +H+ +++L L     L N +L   +   + 
Sbjct: 5   TNPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGST 64

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +  + +F +++  NI  WNT+I G++  +C  +    +  M       ++ T   +L+AC
Sbjct: 65  NYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            +  D+ +G ++HS ++K G+  + FV ++L+ LY KC   +DA +VFD++  +++V W 
Sbjct: 125 ARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWT 184

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++ Y  +     AI  F  +   G+K D F+   ++ +C  LG    G  I   +   
Sbjct: 185 AIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS 244

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
               +V VATSL+DMY K GN++ A  +F  M  K++VSW+TM+ G+  NG  ++A+ L 
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M   +  PD  T+  +LS+C +L          +   +N   +   +  ALI+ YSKC
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKC 364

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GS+  A + F ++K+ D V W +++   + +G +K    +F  +  H +RPD   F+ +L
Sbjct: 365 GSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLL 424

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
             C+HGG V+EG ++FN M   + + P  EHY C+ DLLGR GLL EA+ L+ +MP++P 
Sbjct: 425 CGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPN 484

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +   GA +G CK+H    LA+   +KL+ELEP    NY  +SN+Y+    W +  ++R  
Sbjct: 485 AVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRST 544

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K+  CSWIEI G +H F+  D+SH  +  +YA L
Sbjct: 545 MKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKL 585


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 312/568 (54%), Gaps = 6/568 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           Q+H+H++KLG    L + N ++  Y K        +LF  M  ++ VT+N+L++G  N G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 144 GN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            N      F  +    ++    TF +LL A V  DD + G+++H F+LK  F  N FV +
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D Y K   V++  ++F E+   D + +NV+++ YA N     +  +F  ++      
Sbjct: 281 ALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
             F F++L++   +  + ++GRQIH   I    + +  V  +LVDMYAK     +A ++F
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIF 400

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D +  K+ V W  M+  + Q G   E + +  DM +     D+ T ASIL +C +L+   
Sbjct: 401 DNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASIS 460

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQ+H+  I++G  + +   +AL++ Y+KCG +  A++ FG + E + V+W ++I AYA
Sbjct: 461 LGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYA 520

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            +G    ++  F++M+    +PDS++FL VLSACSH G V E L +FN M   Y + P  
Sbjct: 521 QNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKR 580

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           EHYT + D+L R G   EA  L+  MP EP      + + +C++H +  LAK AA++L  
Sbjct: 581 EHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFN 640

Query: 562 LEPSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           +E  +    Y  +SN+YA    W +VA+++K MRD    KVP  SW+EI  + H F ++D
Sbjct: 641 MEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSAND 700

Query: 621 RSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           +SHP+   M  +L  +  L +E    G+
Sbjct: 701 KSHPE---MKKILRKINALSKEMEKKGY 725



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 148/551 (26%), Positives = 271/551 (49%), Gaps = 20/551 (3%)

Query: 49  LRNSGTIHESTHSAHSFYSQALKVS-------AKF---GFLQQGKQLHSHIM--KLGLCN 96
           LRNS     S +S H   +  +K         + F    FL++G  +H+H +  ++   N
Sbjct: 14  LRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKN 73

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRML 154
            +SL N ++  ++K        +LFD M  R  V+W  LI G +    +   +  +  M 
Sbjct: 74  TISL-NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
              +  D++T  +LL    + +   V  ++H+ ++K+G+  N  V ++LVD Y K   + 
Sbjct: 133 RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY 192

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
            A ++F  +L +D V +N +++ Y+   L + AI +F  +   G+K   FTF++L+++  
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAV 252

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
            L  +K G+Q+HG V+K +F  +V V  +L+D Y+K+  +D+  ++F  M   + +S+N 
Sbjct: 253 GLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNV 312

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS-SCGSLSISCETRQVHAYAIKN 393
           ++  +  NG  +E+  L R +    F   +   A++LS +  SL++    RQ+H  AI  
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRM-GRQIHCQAITV 371

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G      +ENAL++ Y+KC     A + F ++     V WT++I AY   G  +E I VF
Sbjct: 372 GANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVF 431

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
             M    V  D   F  +L AC++   +S G +  +L+I     + +    + L D   +
Sbjct: 432 SDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAK 490

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            G + +A      MP E  S +  A I A   +G++     + +++++    KP + + +
Sbjct: 491 CGCMTDAIKSFGEMP-ERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ-SGYKPDSVSFL 548

Query: 574 SNVYASERCWF 584
           S + A   C F
Sbjct: 549 SVLSACSHCGF 559


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 320/573 (55%), Gaps = 19/573 (3%)

Query: 38  QKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNK 97
           Q  D  + +  LRN       + S   F ++ +   AKF     G QLHS I+++G  + 
Sbjct: 50  QTFDSDLFAHLLRNG------SFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSN 103

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDN 157
           + + + V+ +Y KC       ++F+EM  RN VTWN+LI G +N    V P         
Sbjct: 104 VHICSAVVDMYAKCSEIQSAHEVFNEMPERNDVTWNSLIFGYLN----VMPTCAMR---- 155

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
             +   + ++ L  C Q +    G ++H   LK+GF  N FV +AL+D+Y KC  V+D+ 
Sbjct: 156 -GVTSFSVSTCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSW 214

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGA-IAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           RVFD ++ +++V W  MV+ YA N   D A I V  +MRL G+K +Y T++SL++S    
Sbjct: 215 RVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRL-GIKANYVTYNSLLSSFSGP 273

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTM 335
              +  +Q+H  +I+   + ++ +A +LV +Y+K   N++D  ++  G+   + +SWN +
Sbjct: 274 KYMQYCKQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAV 333

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+   G G +A+K   +M   +   D  T  S+L + G+     E R++HA  +K G 
Sbjct: 334 IAGYSNLGLGEDALKCFCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGY 393

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + + ++N L++ Y++CG+I  + + F  +++ D+V+W +++   A HG   E++E+FE+
Sbjct: 394 ASSVYVQNGLVSMYARCGAIDDSKRVFWLMEDHDVVSWNALLTGCAHHGFGNEAVELFEQ 453

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRV 514
           M    ++P+S  FL VLSACSH G V +GL YF+ M SD  + P   EHY  + D+ GR 
Sbjct: 454 MRKTKIKPNSTTFLAVLSACSHVGSVDKGLEYFDFMRSDISLEPLRVEHYASVVDIFGRA 513

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G L EA  ++  MP++P      A + AC VHG+  +A  +A KLLEL P  P  Y L+S
Sbjct: 514 GYLSEAEAIINCMPMDPGPSVYKALLSACLVHGNREIAVRSARKLLELWPDDPATYILLS 573

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           N+ A+E  W D A +RK+M D    K PG SWI
Sbjct: 574 NMLATEGYWDDAADVRKLMCDRGVRKNPGYSWI 606


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/546 (34%), Positives = 302/546 (55%), Gaps = 3/546 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L    QL++ I+   L   L     +   Y++  +     K F+ +   N+ +WNT+++ 
Sbjct: 28  LASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILAS 87

Query: 139 --IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                C  +V   F+RML +   +D       ++AC      +  +  HS  +K+    +
Sbjct: 88  HSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGD 147

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +V+ AL+++Y + G +E+A +VF+EV  ++ V+W VM+  +       G   +F+ MR 
Sbjct: 148 PYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRR 207

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNID 315
            G + D F    L+ +CG + + K G+  HGL IK++F D +  + TSLVDMY K G +D
Sbjct: 208 SGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLD 267

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A ++F+ ++ ++VV W+ ++ GF +NG   E++ + R ML  S  P+ VT ASI+ +C 
Sbjct: 268 FALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACS 327

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           SL    + R VH Y I+NGV+  +    + I+ Y+KCG I  A + F  + E ++ +W++
Sbjct: 328 SLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWST 387

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  +  HGL  E++ +F +M S    P+S+ F+ VLSACSH G + EG  +F  M  DY
Sbjct: 388 MINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDY 447

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I P  EHY C+ DLLGR G + EA   + +MP EP +   GA +GAC++H    LA+  
Sbjct: 448 GITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEV 507

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A+KLL LE  +   Y ++SN+YA    W  V + R  M +   HK+ G + IEI  +++ 
Sbjct: 508 AKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYL 567

Query: 616 FVSSDR 621
           F S DR
Sbjct: 568 FSSEDR 573



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 210/400 (52%), Gaps = 9/400 (2%)

Query: 66  YSQALKVSAKFGF--LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           ++    V A FG    Q  K  HS  +KL L     +   +++VY +  + ++  K+F+E
Sbjct: 114 FNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEE 173

Query: 124 MRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           + ++N V W  +I G +N      V   F RM      LD      L++AC      + G
Sbjct: 174 VPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEG 233

Query: 182 RRLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           +  H   +K  F   N F+ ++LVD+Y KCGF++ A ++F+E+  RD+V+W+ +++ +A 
Sbjct: 234 KTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFAR 293

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N     +I++F  M  + +  +  TF+S+V +C +LGS K GR +HG +I+   +LDV  
Sbjct: 294 NGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKN 353

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            TS +DMYAK G I  A RVF  +  KNV SW+TM+ GFG +G   EA+ L  +M   + 
Sbjct: 354 YTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQ 413

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENALINAYSKCGSIAGA 418
            P+ VT  S+LS+C S S   E    H  ++    G+         +++   + G I  A
Sbjct: 414 LPNSVTFVSVLSAC-SHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEA 472

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           L    ++  EP    W +++GA   H  ++ + EV +K+L
Sbjct: 473 LSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLL 512



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           +  I    ++ R++ S  +         T ++ +F S  L  S+  G L+QG+ +H +++
Sbjct: 285 SAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSS-LGSLKQGRSVHGYMI 343

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + G+   +      + +Y KC       ++F ++  +N+ +W+T+I+G    G       
Sbjct: 344 RNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALN 403

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDL 206
            F  M   N   + +TF S+L AC  +  IE G   H   +   +G+       + +VDL
Sbjct: 404 LFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWS-HFKSMSRDYGITPVEEHYACMVDL 462

Query: 207 YGKCGFVEDA 216
            G+ G +++A
Sbjct: 463 LGRAGKIDEA 472


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 187/591 (31%), Positives = 321/591 (54%), Gaps = 38/591 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  + +H+ ++K GL N     ++++   V    FD +     +F+ ++  N++ WNT+
Sbjct: 15  LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             G       V+  +  + + ++ L  +  TF  LL++C ++     G+++H  +LK+G+
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 134

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFD-------------------------------E 222
            L+ +V ++L+ +Y + G +EDAR+VFD                               E
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 194

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +D+V WN M+S YA       A+ +F  M    ++ D  T  S+V++C    S +LG
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  +    F  ++ +  +L+D+Y K G ++ AC +F+G++ K+V+SWNT++ G+   
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLS 400
              +EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y  K   GV    S
Sbjct: 315 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 374

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
              +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  + ++F +M  + 
Sbjct: 375 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 434

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD I F+ +LSACSH G++  G   F  M  DY I P  EHY C+ DLLG  GL  EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 494

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++ +M +EP      + + ACK++ ++ L +  A+ L+++EP  P +Y L+SN+YA+ 
Sbjct: 495 EEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 554

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
             W +VA++R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y 
Sbjct: 555 GRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 222/447 (49%), Gaps = 45/447 (10%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD---LYGKCGFVEDARRVFDEV 223
           SLL  C     +   R +H+ ++K G     +  S L++   L      +  A  VF+ +
Sbjct: 7   SLLHNCKTLQSL---RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              +L++WN M   +AL+     A+ ++  M   G+  + +TF  L+ SC    + + G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQ 123

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG-------------------- 323
           QIHG V+K  +DLD+ V TSL+ MY +NG ++DA +VFD                     
Sbjct: 124 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 183

Query: 324 -----------MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
                      +  K+VVSWN M+ G+ + G+ +EA++L ++M++ +  PDE T+ S++S
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243

Query: 373 SCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           +C   S S E  RQVH++   +G  + L I NALI+ Y KCG +  A   F  +   D++
Sbjct: 244 ACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVI 302

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W ++IG Y    L KE++ +F++ML     P+ +  L +L AC+H G +  G R+ ++ 
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG-RWIHVY 361

Query: 492 ISDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
           I+     +   S H T L D+  + G +  A  +  S+ +     +  A I    +HG  
Sbjct: 362 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRA 420

Query: 550 GLA--KWAAEKLLELEPSKPVNYALVS 574
             A   ++  +  E+EP       L+S
Sbjct: 421 NAAFDIFSRMRKNEIEPDDITFVGLLS 447



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 4/216 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+   ++ G+Q+HS I   G  + L + N ++ +Y+KC   +    LF+ +  +++++WN
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 305

Query: 134 TLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           TLI G   +N        F+ ML      + +T  S+L AC     IE+GR +H +I K 
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 365

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             G+    S  ++L+D+Y KCG +E A++VFD +L R L  WN M+  +A++   + A  
Sbjct: 366 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +F+ MR   ++ D  TF  L+++C   G   LGR I
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 461


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 190/578 (32%), Positives = 316/578 (54%), Gaps = 11/578 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A  G L+ G+Q+HS  ++ G      + + ++ +Y +C +    +++FD M   +
Sbjct: 47  ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 106

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V + +LIS     G          +ML   ++ +  T  ++L AC +     +G+++H 
Sbjct: 107 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHG 162

Query: 187 FILK-VGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           +++K +G    + + S+AL+D Y + G  + A+ VFD + C+++V W  M+  Y  +   
Sbjct: 163 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 222

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ VF  M  EG+  + F  S ++ +CG++G   LGRQ+H   IK     D+ V+ +L
Sbjct: 223 EEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNAL 279

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MY + G +++   + + +   ++VSW T +    QNG G +A+ LL  M    F P+ 
Sbjct: 280 LSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNG 339

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
              +S+LSSC  ++   +  Q H  A+K G  + +   NALIN YSKCG +  A   F  
Sbjct: 340 YAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDV 399

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D+ +W S+I  +A HG + +++EVF KM S+ ++PD   FL VL  C+H G+V EG
Sbjct: 400 MHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEG 459

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             +F LMI  Y   P   HY C+ D+LGR G   EA  ++  MP EP +      + +CK
Sbjct: 460 ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCK 519

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H ++ + K AA++L+EL      +Y L+SN+YA    W D  ++R+ M +    K  GC
Sbjct: 520 LHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGC 579

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           SWIEI  E+HTF S D SHP +  +Y ML  +  +M++
Sbjct: 580 SWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 617



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 196/368 (53%), Gaps = 11/368 (2%)

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  +N+V W +++SG    G        F  M+   V  +    N+ L AC     +  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++HS  ++ GF  + ++ S L+++Y +CG +  A+ VFD +   D+V +  ++S +  N
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDLDVL 299
              + A      M  +G+K +  T ++++ +C  +    LG+QIHG +IK+       V 
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVY 176

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
            +T+L+D Y++NG    A  VFD +  KNVVSW +M+  + ++G   EA+++  DM+   
Sbjct: 177 SSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEG 236

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E  L+ +L +CGS+ +    RQ+H  AIK+ +   + + NAL++ Y + G +    
Sbjct: 237 VDPNEFALSIVLGACGSIGLG---RQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 293

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
                ++ PDLV+WT+ I A   +G  +++I +  +M S    P+  AF  VLS+C+   
Sbjct: 294 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVA 353

Query: 480 LVSEGLRY 487
            + +G+++
Sbjct: 354 SLDQGMQF 361



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 192/383 (50%), Gaps = 20/383 (5%)

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +++V W  ++S Y  N   + A+A+F  M   G+  + F  ++ + +C  LG+ + G Q+
Sbjct: 4   KNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 63

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L ++  F  D  + + L++MY++ G++  A  VFD M + +VV + +++  F +NG+ 
Sbjct: 64  HSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEF 123

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQA-FLSIEN 403
             A + L  ML+    P+E T+ +IL++C  +      +Q+H Y IK  G+++  +    
Sbjct: 124 ELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSVYSST 179

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALI+ YS+ G    A   F S+   ++V+W S++  Y   G  +E+++VF  M+S  V P
Sbjct: 180 ALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDP 239

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           +  A   VL AC   GL     R  +     + ++ D      L  + GR GL+ E    
Sbjct: 240 NEFALSIVLGACGSIGLG----RQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEE---- 291

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL--EPSKPVNYALVSNVYASER 581
           L +M  +  +  L ++  A   +   G  + A   L ++  E   P  YA  S+V +S  
Sbjct: 292 LEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAF-SSVLSS-- 348

Query: 582 CWFDVARLRKMMRDNCDHKVPGC 604
           C  DVA L + M+ +C     GC
Sbjct: 349 C-ADVASLDQGMQFHCLALKLGC 370



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 34/261 (13%)

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  KNVV+W +++ G+ +NG    A+ +  DM++    P++    + L +C  L      
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
            QVH+ A++ G      I + LI  YS+CGS+  A + F  +  PD+V +TS+I A+  +
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-------HGGLVSE-GLR----YFNLM 491
           G  + + E   +ML   ++P+      +L+AC        HG L+ + GLR    Y +  
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTA 180

Query: 492 ISDYH----------ILPDSEH------YTCLTDLLGRVGLLVEAYDLLASM---PIEPR 532
           + D++           + DS H      +  +  L  R G L EA  +   M    ++P 
Sbjct: 181 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPN 240

Query: 533 SDTLGAFIGACKVHGSIGLAK 553
              L   +GAC   GSIGL +
Sbjct: 241 EFALSIVLGAC---GSIGLGR 258



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A    L QG Q H   +KLG  +++   N ++++Y KC         FD M 
Sbjct: 342 FSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMH 401

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++ +WN+LI G    G        F +M  + ++ D  TF  +L  C  +  +E G  
Sbjct: 402 THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGEL 461

Query: 184 LHSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYAL 240
               ++ +  F       + ++D+ G+ G  ++A R+ +++    D ++W  ++ SC   
Sbjct: 462 FFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLH 521

Query: 241 NCLGDGAIAVFNLMRL 256
             L  G +A   LM L
Sbjct: 522 RNLDIGKLAADRLMEL 537


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 192/563 (34%), Positives = 317/563 (56%), Gaps = 9/563 (1%)

Query: 79  LQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L+ G+ +H H+++ GL + K+++ N ++++Y KC A +   K+F  M   + ++WNT+IS
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454

Query: 138 GIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
            +   G       ++  M    +   +    S L +C     +  G+++H   +K G  L
Sbjct: 455 ALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDL 514

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA-VFNLM 254
           +  VS+ LV +YG+CG + D  +VF+ +   D V WN M+   A +      I  VFN M
Sbjct: 515 DTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNM 574

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  +  TF +L+ +   L   +LG+Q+H  V+K     D +V  +L+  YAK+G++
Sbjct: 575 MRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDM 634

Query: 315 DDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
                +F  M+  ++ +SWN+M+ G+  NG+ +EA+  +  M+      D  T + IL++
Sbjct: 635 GSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNA 694

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S++      ++HA+ I++ +++ + +E+AL++ YSKCG +  A + F S+ + +  +W
Sbjct: 695 CASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSW 754

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            S+I  YA HGL +++IE+FE+ML     PD + F+ VLSACSH GLV  GL YF +M  
Sbjct: 755 NSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMM-P 813

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC---KVHGSIG 550
           D+ ILP  EHY+C+ DLLGR G + +  + +  MPIEP +      + AC   K   +I 
Sbjct: 814 DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNID 873

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           L + A+  LLE+EP  PVNY L SN +A+   W D A+ R  MR   + K  G SW+ + 
Sbjct: 874 LGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLN 933

Query: 611 GEIHTFVSSDRSHPQAVHMYAML 633
             +HTF++ DRSHP    +Y  L
Sbjct: 934 DGVHTFIAGDRSHPNTKEIYEKL 956



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 194/376 (51%), Gaps = 5/376 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           +L   A    L  G+Q+H   +K GL    S+ N ++ +Y +C A  D  K+F+ M   +
Sbjct: 487 SLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHD 546

Query: 129 IVTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            V+WNT++  + +       +   F  M+   +  + +TF +LL A      +E+G+++H
Sbjct: 547 EVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLG 244
           + ++K G   +  V +AL+  Y K G +     +F  +   RD + WN M+S Y  N   
Sbjct: 607 AAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNL 666

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+    LM   G   D  TFS ++N+C ++ + + G ++H   I+   + DV+V ++L
Sbjct: 667 QEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESAL 726

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           VDMY+K G +D A ++F+ MT +N  SWN+M+ G+ ++G GR+A+++  +ML+    PD 
Sbjct: 727 VDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDH 786

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           VT  S+LS+C    +     +       +G+   +   + +I+   + G I    +    
Sbjct: 787 VTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQR 846

Query: 425 VK-EPDLVTWTSIIGA 439
           +  EP+ + W +++ A
Sbjct: 847 MPIEPNALIWRTVLVA 862



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 214/425 (50%), Gaps = 28/425 (6%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           + LH  ++K GL + L L N +++ Y K        ++FDEM  RN V+W  L+SG +  
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 143 GGNVTPY--FRRMLLD---NVRLDHITFNSLLRACVQA--DDIEVGRRLHSFILKVGFGL 195
           G     +  FR ML +     R    TF +LLRAC     D +    ++H  + K  +  
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 196 NCFVSSALVDLYGKC--GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
           N  V +AL+ +YG C  G    A+RVFD    RDL+ WN ++S YA    GD A + F L
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKK--GDVA-STFTL 257

Query: 254 MRLEGMKGD--------YFTFSSLVN-SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
            + +  +GD          TF SL+  +  + GSS +  Q+   V+K     D+ V ++L
Sbjct: 258 FK-DMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSAL 316

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V  +A++G  D+A  +F  +  KN V+ N ++VG  +     EAVK+     + +   + 
Sbjct: 317 VSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGT-RNTVDVNA 375

Query: 365 VTLASILSSCGSLSISCE----TRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGAL 419
            T   +LS+    SIS E     R VH + ++ G+    +++ N L+N Y+KCG+I  A 
Sbjct: 376 DTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESAS 435

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F  ++  D ++W +II A   +G  +E++  +  M    + P + A +  LS+C+   
Sbjct: 436 KIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLK 495

Query: 480 LVSEG 484
           L++ G
Sbjct: 496 LLTAG 500



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 166/337 (49%), Gaps = 16/337 (4%)

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           H     LLR   +  D      LH  ++K G   + F+ + LV+ Y K   +  A +VFD
Sbjct: 64  HADLLPLLR---RGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFD 120

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE---GMKGDYFTFSSLVNSCGTLGS 278
           E+  R+ V W  +VS Y L+ + + A  VF  M  E   G +   FTF +L+ +C   G 
Sbjct: 121 EMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGP 180

Query: 279 SKLG--RQIHGLVIKQSFDLDVLVATSLVDMYAK--NGNIDDACRVFDGMTAKNVVSWNT 334
            +LG   Q+HGLV K  +  +  V  +L+ MY     G    A RVFDG   +++++WN 
Sbjct: 181 DRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNA 240

Query: 335 MVVGFGQNGDGREAVKLLRDMLQG----SFCPDEVTLASILSSCGSLSISCET-RQVHAY 389
           ++  + + GD      L +DM +G       P E T  S++++    S S     QV  +
Sbjct: 241 LMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVW 300

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            +K+G  + L + +AL++A+++ G    A   F S+K+ + VT   +I        S+E+
Sbjct: 301 VLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEA 360

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           +++F     + V  ++  ++ +LSA +   +  EGLR
Sbjct: 361 VKIFVGT-RNTVDVNADTYVVLLSALAEYSISEEGLR 396



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A    L++G +LH+  ++  L + + +++ ++ +Y KC   D   KLF+ M 
Sbjct: 688 FSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMT 747

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN  +WN++ISG      G      F  ML      DH+TF S+L AC  A  +E G  
Sbjct: 748 QRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLE 807

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSC 237
               +   G        S ++DL G+ G ++  +     + +  + ++W  V+V+C
Sbjct: 808 YFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVAC 863


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 321/592 (54%), Gaps = 38/592 (6%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNT 134
            LQ  + +H+ ++K GL N     ++++   +    FD +     +F+ ++  N++ WNT
Sbjct: 2   ILQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNT 61

Query: 135 LISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +  G       V+     + + ++ L  +  TF  LL++C ++   + G+++H  +LK+G
Sbjct: 62  MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG 121

Query: 193 FGLNCFVSSALVDLY-------------------------------GKCGFVEDARRVFD 221
             L+ +V ++L+ +Y                                  G++E+A+++FD
Sbjct: 122 CDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFD 181

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           E+  +D+V WN M+S YA       A+ +F  M    ++ D  T  ++V++C   GS +L
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 241

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           GRQ+H  +    F  ++ +  +L+D+Y+K G ++ AC +F+G+  K+V+SWNT++ G+  
Sbjct: 242 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTH 301

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFL 399
               +EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y  K   GV    
Sbjct: 302 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANAS 361

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           S+  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  S ++F +M  +
Sbjct: 362 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKN 421

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + PD I F+ +LSACSH G++  G   F  M  DY + P  EHY C+ DLLG  GL  E
Sbjct: 422 GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKE 481

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A +++ +M +EP      + + ACK+HG++ L +  A+ L+++EP  P +Y L+SN+YA+
Sbjct: 482 AEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYAT 541

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
              W +VA  R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y 
Sbjct: 542 AGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 593



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 206/412 (50%), Gaps = 37/412 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDD------ 116
           LK  AK    ++G+Q+H H++KLG    L +   ++ +YV+        K FD+      
Sbjct: 98  LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDV 157

Query: 117 ------------------MEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                              +K+FDE+ V+++V+WN +ISG    G        F+ M+  
Sbjct: 158 VSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 217

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NVR D  T  +++ AC Q+  IE+GR++HS+I   GFG N  + +AL+DLY KCG +E A
Sbjct: 218 NVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETA 277

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F+ +  +D++ WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 278 CGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 337

Query: 277 GSSKLGRQIHGLVIKQSFDLDVL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+   +     + TSL+DMYAK G+I+ A +VF+ +  K++ SWN 
Sbjct: 338 GAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 397

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN- 393
           M+ GF  +G    +  +   M +    PD++T   +LS+C    +    R +     ++ 
Sbjct: 398 MIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDY 457

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +   L     +I+     G    A +   +++ EPD V W S++ A   HG
Sbjct: 458 KMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 509


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 320/591 (54%), Gaps = 38/591 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  + +H+ ++K GL N     +++L   V    FD +     +FD ++   ++ WNT+
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTM 74

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             G       V+     + + ++ L  +  TF  LL++C ++   + G++LH  +LK GF
Sbjct: 75  FRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGF 134

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRV-------------------------------FDE 222
            L+ ++ ++L+ +Y + G +EDA++V                               FDE
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDE 194

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +D+V WN  +S YA       A+ +F  M    ++ D  T  +++++C   GS +LG
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  +    F  ++ +  +L+D+Y+K G ++ AC +F G++ K+V+SWNT++ G+   
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLS 400
              +EA+ L +DML+    P++VT+ SILS+C  L      R +H Y  K   GV    S
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  + ++F +M  + 
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD I F+ +LSACSH G++  G   F  M  DY ++P  EHY C+ DL G  GL  EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEA 494

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
             ++ +M +EP      + + ACK+HG++ L +  A+ L+++EP  P +Y L+SN+YA+ 
Sbjct: 495 EKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATA 554

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
             W +VA+ R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y 
Sbjct: 555 ERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 203/412 (49%), Gaps = 37/412 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME----------- 118
           LK  AK    ++G+QLH  ++K G    L +   ++ +YV+    +D +           
Sbjct: 110 LKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169

Query: 119 --------------------KLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                               K+FDE+ V+++V+WN  ISG    G        F++M+  
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NVR D  T  ++L AC Q+  IE+GR++HS+I   GFG N  + +AL+DLY KCG +E A
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETA 289

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F  +  +D++ WN ++  Y    L   A+ +F  M   G K +  T  S++++C  L
Sbjct: 290 CGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHL 349

Query: 277 GSSKLGRQIHGLVIKQSFDLDVL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+   +     + TSL+DMYAK G+I+ A +VFD M  +++ SWN 
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN- 393
           M+ GF  +G    A  +   M +    PD++T   +LS+C    +    R +     ++ 
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDY 469

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +   L     +I+     G    A +   +++ EPD V W S++ A   HG
Sbjct: 470 KLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHG 521



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 226/472 (47%), Gaps = 53/472 (11%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD---LYGKCGFVEDARRVFDEV 223
           SLL  C     + +   +H+ ++K G     +  S L++   L      +  A  VFD +
Sbjct: 7   SLLHXCKTLQSLRI---IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
               L++WN M   +AL+     A+ ++  M   G+  + +TF  L+ SC    + K G+
Sbjct: 64  QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQ 123

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV----------------------- 320
           Q+HG V+K  FDLD+ + TSL+ MY +NG ++DA +V                       
Sbjct: 124 QLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRG 183

Query: 321 --------FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
                   FD +  K+VVSWN  + G+ + G+ +EA++L + M++ +  PDE T+ ++LS
Sbjct: 184 XIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLS 243

Query: 373 SC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +C   GS+ +    RQVH++   +G    L I NALI+ YSKCG +  A   F  +   D
Sbjct: 244 ACAQSGSIELG---RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKD 300

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +++W ++IG Y    L KE++ +F+ ML    +P+ +  L +LSAC+H G +  G R+ +
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG-RWIH 359

Query: 490 LMISDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           + I      +   S   T L D+  + G +  A  +  SM +     +  A I    +HG
Sbjct: 360 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHG 418

Query: 548 SIGLAKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVAR--LRKMMRD 595
               A     ++ +  +EP       L+S    S     D+ R   R M RD
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSA--CSHSGMLDLGRHIFRSMTRD 468


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 314/574 (54%), Gaps = 35/574 (6%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           +F  ++  N ++WNT+I G       ++    +  M+   +  +  TF  L ++C ++  
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD---------------- 221
            + G+++H+ ILK G  ++  V ++L+ +Y + G VEDA +VFD                
Sbjct: 94  AQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG 153

Query: 222 ---------------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
                          E+  +D+V WN M+S YA       A+ +FN M    +K D  T 
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           ++++++C   G+ +LGRQIH  +    F  ++ +  +L+D+Y+K G ++ A  +F+G+  
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           K+V+SWNT++ G+      +EA+ + ++ML+    P++VT+ SIL +C  L      R +
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333

Query: 387 HAYAIKN--GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           H Y  K   G+    S++ +LI+ Y+KCG+I  A Q F ++    L +  ++I  +A HG
Sbjct: 334 HVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHG 393

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            +  + ++  +M    + PD I F+ +LSACSH GL   G + F  M  DY I P  EHY
Sbjct: 394 RADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHY 453

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+ DLLGR GL  EA +L+ SM +EP     G+ + ACK+H ++ L +  A+KL+++EP
Sbjct: 454 GCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEP 513

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
             P +Y L+SN+YA+   W DVAR+R ++ D    KVPGCS IEI   +H F+  D+ HP
Sbjct: 514 KNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHP 573

Query: 625 QAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           Q   +Y ML  +  L+ E       + + +EM+E
Sbjct: 574 QNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEE 607



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 203/411 (49%), Gaps = 37/411 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
            K  AK    Q+GKQ+H+ I+K GL   L +   ++ +Y +        K FD       
Sbjct: 85  FKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
                              +K+FDE+ ++++V+WN +ISG    G        F  M+  
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           +V+ D  T  ++L  C  + ++E+GR++HS+I   GFG N  + +AL+DLY KCG +E A
Sbjct: 205 DVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERA 264

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F+ +  +D++ WN ++  YA       A+ VF  M   G   +  T  S++ +C  L
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324

Query: 277 GSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K  +    +  + TSL+DMYAK GNI+ A +VFD +  K++ S N 
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNA 384

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV-HAYAIKN 393
           M+ GF  +G    A  LL  M +    PD++T   +LS+C    +S   R++  +  +  
Sbjct: 385 MIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDY 444

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
            ++  L     +I+   + G    A +   S+  EPD V W S++ A   H
Sbjct: 445 RIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIH 495



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 32/242 (13%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  +   N +SWNTM+ G   + D   A+ L   M+     P+  T   +  SC  
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS------------ 424
              + E +Q+HA  +K G+   L +  +LI+ Y++ G +  A + F +            
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 425 -------------------VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
                              +   D+V+W ++I  YA  G  KE++E+F +M+   V+PD 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
                VLS C+H G V  G R  +  I ++    + +    L DL  + G +  A+ L  
Sbjct: 211 STMATVLSTCTHSGNVELG-RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 526 SM 527
            +
Sbjct: 270 GL 271


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 195/595 (32%), Positives = 330/595 (55%), Gaps = 30/595 (5%)

Query: 77   GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
            G ++ GKQ+H++ ++ G     +  N ++ +Y +    +D + LF     +++V+WNT+I
Sbjct: 448  GGVRLGKQVHAYTLRNGDLRTYT-NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506

Query: 137  SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            S +           Y   M++D VR D +T  S+L AC Q + + +GR +H + L+ G  
Sbjct: 507  SSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDL 566

Query: 195  L-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
            + N FV +ALVD+Y  C   +  R VFD V+ R + +WN +++ YA N   D A+ +F  
Sbjct: 567  IENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVE 626

Query: 254  MRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M  E     +  TF+S++ +C           IHG ++K+ F  D  V  +L+DMY++ G
Sbjct: 627  MISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMG 686

Query: 313  NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM--LQGS----------- 359
             ++ +  +F  M  +++VSWNTM+ G    G   +A+ LL +M   QG            
Sbjct: 687  RVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYED 746

Query: 360  -----FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
                 F P+ VTL ++L  C +L+   + +++HAYA+K  +   +++ +AL++ Y+KCG 
Sbjct: 747  DGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGC 806

Query: 415  IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS------HAVRPDSIAF 468
            +  A + F  +   +++TW  +I AY  HG  +E++E+F  M +        +RP+ + +
Sbjct: 807  LNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTY 866

Query: 469  LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            + + +ACSH G+V EGL  F+ M + + + P  +HY CL DLLGR G + EAY+L+ +MP
Sbjct: 867  IAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMP 926

Query: 529  IE-PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587
                + D   + +GAC++H S+   + AA+ L  LEP+   +Y L+SN+Y+S   W    
Sbjct: 927  SNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQAL 986

Query: 588  RLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
             +RK M++    K PGCSWIE   E+H F+S D SHPQ+  ++  L T+   M +
Sbjct: 987  GVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRK 1041



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 251/527 (47%), Gaps = 45/527 (8%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLC--NKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +   LK +A    L  GKQ+H+H+ K G    + +++ N ++++Y KC       ++FD+
Sbjct: 333 FPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDD 392

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQA-DDIEV 180
           +  R+ V+WN++I+ +            FR ML +NV     T  S+  AC      + +
Sbjct: 393 IPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRL 452

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G+++H++ L+ G  L  + ++ALV +Y + G V DA+ +F     +DLV WN ++S  + 
Sbjct: 453 GKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQ 511

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH------GLVIKQSF 294
           N   + A+    LM ++G++ D  T +S++ +C  L   ++GR+IH      G +I+ SF
Sbjct: 512 NDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF 571

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
                V T+LVDMY           VFDG+  + V  WN ++ G+ +N    +A++L  +
Sbjct: 572 -----VGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVE 626

Query: 355 ML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
           M+ +  FCP+  T AS+L +C    +  +   +H Y +K G      ++NAL++ YS+ G
Sbjct: 627 MISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMG 686

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-------------- 459
            +  +   FG + + D+V+W ++I      G   +++ +  +M                 
Sbjct: 687 RVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYED 746

Query: 460 ----AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
                 +P+S+  + VL  C+    + +G       +    +  D    + L D+  + G
Sbjct: 747 DGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQ-KLAMDVAVGSALVDMYAKCG 805

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
            L  A  +   MPI     T    I A  +HG         E+ LEL
Sbjct: 806 CLNLASRVFDQMPIR-NVITWNVLIMAYGMHGK-------GEEALEL 844



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 170/320 (53%), Gaps = 6/320 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL--NCFVSSALVDLYGKCGFVEDARR 218
           D+  F ++L+A     D+ +G+++H+ + K G     +  V+++LV++YGKCG +  AR+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL-G 277
           VFD++  RD V WN M++        + ++ +F LM  E +    FT  S+ ++C  + G
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             +LG+Q+H   ++   DL      +LV MYA+ G ++DA  +F     K++VSWNT++ 
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
              QN    EA+  +  M+     PD VTLAS+L +C  L      R++H YA++NG   
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLI 567

Query: 398 FLS-IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             S +  AL++ Y  C         F  V    +  W +++  YA +    +++ +F +M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 457 LSHA-VRPDSIAFLEVLSAC 475
           +S +   P++  F  VL AC
Sbjct: 628 ISESEFCPNATTFASVLPAC 647



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK--QSFDLDVLVATSL 304
           AI+ +  M       D F F +++ +   +    LG+QIH  V K   +    V VA SL
Sbjct: 314 AISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSL 373

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V+MY K G++  A +VFD +  ++ VSWN+M+    +  +   ++ L R ML  +  P  
Sbjct: 374 VNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTS 433

Query: 365 VTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            TL S+  +C  +       +QVHAY ++NG        NAL+  Y++ G +  A   FG
Sbjct: 434 FTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFG 492

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
                DLV+W ++I + + +   +E++     M+   VRPD +    VL ACS 
Sbjct: 493 VFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQ 546



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 16/223 (7%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L +GK++H++ +K  L   +++ + ++ +Y KC   +   ++FD+M +RN++TWN
Sbjct: 767 AALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWN 826

Query: 134 TLI--SGIINCGGNVTPYFRRMLL------DNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            LI   G+   G      FR M        + +R + +T+ ++  AC  +  ++ G  LH
Sbjct: 827 VLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEG--LH 884

Query: 186 SF-ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMV-SCYA 239
            F  +K   G+       + LVDL G+ G V++A  + + +      +  W+ ++ +C  
Sbjct: 885 LFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRI 944

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
              +  G IA  +L  LE     ++   S + S   L    LG
Sbjct: 945 HQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALG 987


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 318/591 (53%), Gaps = 10/591 (1%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L+ G+ LH  I K GL + + + N +L +Y +  + +D E +F  M  R++++WN++++ 
Sbjct: 468  LKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMAS 527

Query: 139  IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             +  G   +       ML     ++++TF + L AC   + +++   +H+F++      N
Sbjct: 528  HVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKI---VHAFVIHFAVHHN 584

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
              + + LV +YGK G +++A++V   +  RD+V WN ++  +A +   +  I  FNLMR 
Sbjct: 585  LIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRR 644

Query: 257  EGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+  +Y T  +L+ +C +     K G  IH  ++   F+LD  V +SL+ MYA+ G+++
Sbjct: 645  EGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLN 704

Query: 316  DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
             +  +FD +  KN  +WN +       G G EA+K +  M       D+ + +  L++ G
Sbjct: 705  TSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIG 764

Query: 376  SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            +L++  E +Q+H++ IK G +    + NA ++ Y KCG I    +     K     +W  
Sbjct: 765  NLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNI 824

Query: 436  IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
            +I A A HG  +++ E F +ML   ++PD + F+ +LSACSHGGLV EGL YF+ M S++
Sbjct: 825  LISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEF 884

Query: 496  HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
             +    EH  C+ DLLGR G L EA   +  MP+ P      + + ACKVHG++ L + A
Sbjct: 885  GVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKA 944

Query: 556  AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            A++L EL  S    Y L SNV AS + W DV  +RK M      K P CSWI++  ++ T
Sbjct: 945  ADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMT 1004

Query: 616  FVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            F   D+ HPQ+  +YA L  +  +  E     + S      D+E  E  LW
Sbjct: 1005 FGMGDQFHPQSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLW 1055



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 231/465 (49%), Gaps = 9/465 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK LH+  +K  +       N ++++Y K  +    + +FD+M  RN  +WN +ISG + 
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHSFILKVGFGLNCF 198
            G       +F  M  + V        S++ AC ++  +  G R++H +++K G   N F
Sbjct: 226 VGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVF 285

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+  YG  G V +A ++F+E+   ++V W  ++ CYA N      + ++  +R  G
Sbjct: 286 VGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNG 345

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDA 317
           +     T ++++ +CG  G   +G QI G VIK   D   V VA SL+ M+    ++++A
Sbjct: 346 LICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEA 405

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            RVF+ M  ++ +SWN+++     NG   E++     M +     D +T++++L +CGS 
Sbjct: 406 SRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSA 465

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 R +H    K+G+++ + + N+L++ Y++ GS   A   F ++   DL++W S++
Sbjct: 466 QHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMM 525

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            ++   G    +I +  +ML      + + F   LSAC +     E L+  +  +  + +
Sbjct: 526 ASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYN----LEKLKIVHAFVIHFAV 581

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
             +      L  + G+ GL+ EA  +   MP E    T  A IG 
Sbjct: 582 HHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ERDVVTWNALIGG 625



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 208/399 (52%), Gaps = 6/399 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           +  +Q+H +++K GL + + +   +LH Y    +  +  KLF+E+   NIV+W +L+   
Sbjct: 266 EGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCY 325

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G    V   +R +  + +     T  +++R C    D  +G ++   ++K G   + 
Sbjct: 326 ADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSS 385

Query: 198 F-VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V+++L+ ++G    VE+A RVF+ +  RD + WN +++  A N   + ++  F  MR 
Sbjct: 386 VSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRR 445

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
              K DY T S+L+ +CG+    K GR +HGL+ K   + +V V  SL+ MYA+ G+ +D
Sbjct: 446 THPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSED 505

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M A++++SWN+M+    ++G    A+ LL +ML+     + VT  + LS+C +
Sbjct: 506 AELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYN 565

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L    + + VHA+ I   V   L I N L+  Y K G +  A +    + E D+VTW ++
Sbjct: 566 LE---KLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNAL 622

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           IG +A       +I+ F  M    +  + I  + +L  C
Sbjct: 623 IGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTC 661



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 155/298 (52%), Gaps = 2/298 (0%)

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           VG+ LH+  +K     N F ++ LV++Y K G ++ A+ VFD++  R+   WN M+S + 
Sbjct: 165 VGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFV 224

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDV 298
                  A+  F  M   G+    +  +S+V +C   G    G RQIHG V+K     +V
Sbjct: 225 RVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNV 284

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V TSL+  Y  +G++ +A ++F+ +   N+VSW +++V +  NG  +E + + R +   
Sbjct: 285 FVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHN 344

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ-AFLSIENALINAYSKCGSIAG 417
                  T+A+++ +CG         Q+    IK+G+  + +S+ N+LI+ +    S+  
Sbjct: 345 GLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEE 404

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A + F +++E D ++W SII A A +G  +ES+  F  M     + D I    +L AC
Sbjct: 405 ASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPAC 462



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 101/182 (55%), Gaps = 1/182 (0%)

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           +    +G+ +H L +K     +     +LV+MY+K G+I  A  VFD M  +N  SWN M
Sbjct: 160 ISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNM 219

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNG 394
           + GF + G   +A++    M +    P    +AS++++C       E  RQ+H Y +K G
Sbjct: 220 ISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCG 279

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           + + + +  +L++ Y   GS++ A + F  ++EP++V+WTS++  YA +G +KE + ++ 
Sbjct: 280 LMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYR 339

Query: 455 KM 456
            +
Sbjct: 340 HL 341



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 7/197 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL        L +G+QLHS I+KLG      + N  + +Y KC   DD+ ++    +
Sbjct: 756 FSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPK 815

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +R+  +WN LIS +   G     T  F  ML   ++ DH+TF SLL AC     ++ G  
Sbjct: 816 IRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLV 875

Query: 184 LHSFILKVGFGLNCFVSS--ALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYA 239
             S  +   FG+   +     ++DL G+ G + +A    D+  V   + V  +++ +C  
Sbjct: 876 YFS-SMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKV 934

Query: 240 LNCLGDGAIAVFNLMRL 256
              L  G  A   L  L
Sbjct: 935 HGNLELGRKAADRLFEL 951


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 317/554 (57%), Gaps = 5/554 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K LH+HI+K G        ++++  Y+KC    +  KLFDEM  R+IVTWN++IS  ++ 
Sbjct: 21  KSLHTHILKSGSLFSF-FGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 143 GGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFV 199
           G        +  ML + V  D  TF+++ +A  +      G++ H   + +GF + + FV
Sbjct: 80  GKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFV 139

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ +VD+Y K G ++DAR VFD VL +D+VL+  ++  Y    L   A+ VF  M    +
Sbjct: 140 ATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRI 199

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K + +T +S++ SCG LG    G+ IHGLV+K   +  V   TSL+ MY+K   ++D+ +
Sbjct: 200 KPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIK 259

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +   + V+W + +VG  QNG    A+ + R+M++ S  P+  T +SIL +C SL++
Sbjct: 260 VFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAM 319

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                Q+HA  +K GV     ++ ALI+ Y KCG++  A   F S+ E D+V+  ++I A
Sbjct: 320 LEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYA 379

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA +G   E++E+FE+M     +P+ + F+ +L AC++ GLV EG + F+L+ +++ I  
Sbjct: 380 YAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIEL 439

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             +HYTC+ DLLGR     EA  L+      P        + ACK+HG + +A+   +K+
Sbjct: 440 TRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKM 498

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSS 619
           L+  P     + L++N+YAS   W +V  ++   RD    K P  SW++I  E+HTF++ 
Sbjct: 499 LDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAG 558

Query: 620 DRSHPQAVHMYAML 633
           D SHP+A  +  ML
Sbjct: 559 DLSHPRAHEISEML 572



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
            G L  GK +H  ++K GL + ++ Q  +L +Y KC   +D  K+F+ +   + VTW + 
Sbjct: 216 LGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSF 275

Query: 136 ISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G++  G        FR M+  ++  +H TF+S+L AC     +E G ++H+  +K+G 
Sbjct: 276 IVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGV 335

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             N +V +AL+ LYGKCG VE AR VF+ +   D+V  N M+  YA N  G  A+ +F  
Sbjct: 336 DGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFER 395

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI-KQSFDLDVLVATSLVDMYAKNG 312
           M+  G K +  TF S++ +C   G  + G QI  L+    S +L     T ++D+  +  
Sbjct: 396 MKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAK 455

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE----VTLA 368
             ++A  + +     +V+ W T++     +G+   A K ++ ML  +  P +    + L 
Sbjct: 456 RFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQA--PRDGGTHILLT 513

Query: 369 SILSSCG 375
           +I +S G
Sbjct: 514 NIYASAG 520



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  L   +    L+ G+Q+H+  +KLG+     +   ++H+Y KC   +    +F+
Sbjct: 304 HFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFE 363

Query: 123 EMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +   ++V+ NT+I        G      F RM     + + +TF S+L AC  A  +E 
Sbjct: 364 SLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEE 423

Query: 181 GRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           G ++ S I       L     + ++DL G+    E+A  + +E    D++ W  +++ 
Sbjct: 424 GCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNA 481


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 307/551 (55%), Gaps = 2/551 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--C 142
           LHS I+KLG  +   +   +++ Y  C + D    +F+ +  ++IV W  ++S  +   C
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             +      RM +D    ++ TF++ L+A +        + +H  ILK  + L+  V   
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+ LY + G + DA +VF+E+   D+V W+ M++ +  N   + A+ +F  MR   +  +
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPN 347

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
            FT SS++N C     S LG Q+HGLV+K  FDLDV V+ +L+D+YAK   +D A ++F 
Sbjct: 348 EFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFA 407

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +++KNVVSWNT++VG+   G+G +A+ + R+ L+      EVT +S L +C SL+    
Sbjct: 408 ELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMEL 467

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             QVH  AIK      +++ N+LI+ Y+KCG I  A   F  ++  D+ +W ++I  Y+ 
Sbjct: 468 GVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYST 527

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HGL ++++ +F+ M     +P+ + FL VLS CS+ GL+ +G   F  MI D+ I P  E
Sbjct: 528 HGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLE 587

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HYTC+  L GR G L +A +L+  +P EP      A + A     +   A+ +AE++L++
Sbjct: 588 HYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKI 647

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
            P     Y L+SN+YA  + W +VA +RK M++    K PG SWIE  G++H F      
Sbjct: 648 NPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSD 707

Query: 623 HPQAVHMYAML 633
           HP    +  ML
Sbjct: 708 HPDMKLINGML 718



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/411 (32%), Positives = 218/411 (53%), Gaps = 2/411 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            K +H  I+K G C  L   N +L+ YVK     D   LFDEM  RN V++ TL  G   
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA- 126

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
           C   V  Y  R+  +   L+   F S L+  V  D  E+   LHS I+K+G+  N FV +
Sbjct: 127 CQDPVGLY-SRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGA 185

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL++ Y  CG V+ AR VF+ +LC+D+V+W  +VSCY  N   + ++ + + M ++G   
Sbjct: 186 ALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMP 245

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           + +TF + + +   LG+    + +HG ++K  ++LD  V   L+ +Y + G++ DA +VF
Sbjct: 246 NNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVF 305

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           + M   +VV W+ M+  F QNG   +AV +   M +G   P+E TL+SIL+ C     S 
Sbjct: 306 NEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSG 365

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H   +K G    + + NALI+ Y+KC  +  A++ F  +   ++V+W ++I  Y 
Sbjct: 366 LGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYE 425

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             G   +++ +F + L + V    + F   L AC+    +  G++   L I
Sbjct: 426 NLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAI 476



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 203/385 (52%), Gaps = 18/385 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV--LHVYVKCKAFDDMEKLFDE 123
           +  ALK S   G     K +H  I+K   C +L  +  V  L +Y +     D  K+F+E
Sbjct: 250 FDTALKASIGLGAFHFAKSVHGQILK--TCYELDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M   ++V W+ +I+     G        F RM    V  +  T +S+L  C       +G
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            +LH  ++KVGF L+ +VS+AL+D+Y KC  ++ A ++F E+  +++V WN ++  Y   
Sbjct: 368 EQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGY--E 425

Query: 242 CLGDGAIAVFNLMRLEGMKGDY----FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
            LG+G  A+ N+ R E ++        TFSS + +C +L S +LG Q+HGL IK +    
Sbjct: 426 NLGEGGKAL-NMFR-EALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKR 483

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           V V+ SL+DMYAK G+I  A  VF+ M   +V SWN ++ G+  +G GR+A+++  D+++
Sbjct: 484 VAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIF-DIMK 542

Query: 358 GSFC-PDEVTLASILSSCGSLSISCETRQVHAYAI-KNGVQAFLSIENALINAYSKCGSI 415
           GS C P+ +T   +LS C +  +  + +      I  +G++  L     ++  + + G +
Sbjct: 543 GSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQL 602

Query: 416 AGALQCFGSVK-EPDLVTWTSIIGA 439
             A+     +  EP ++ W +++ A
Sbjct: 603 DKAMNLIEGIPYEPSVMIWRAMLSA 627



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 167/333 (50%), Gaps = 4/333 (1%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD   + ++LR C++ +D    + +H  ILK G  L+ F ++ L++ Y K GF +DA  +
Sbjct: 47  LDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE+  R+ V +  +   YA        + +++ +  EG + +   F+S +    +L  +
Sbjct: 107 FDEMPERNNVSYVTLTQGYACQ----DPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKA 162

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           ++   +H  ++K  +D +  V  +L++ Y+  G++D A  VF+G+  K++V W  +V  +
Sbjct: 163 EICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCY 222

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            +NG   ++++LL  M    F P+  T  + L +   L      + VH   +K   +   
Sbjct: 223 VENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDP 282

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +   L+  Y++ G ++ A + F  + + D+V W+ +I  +  +G   +++++F +M   
Sbjct: 283 RVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREG 342

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            V P+      +L+ C+ G     G +   L++
Sbjct: 343 FVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 10/198 (5%)

Query: 43  SVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQN 102
           ++    LRN  ++ E T      +S AL   A    ++ G Q+H   +K     ++++ N
Sbjct: 435 NMFREALRNQVSVTEVT------FSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSN 488

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRL 160
            ++ +Y KC      + +F+EM   ++ +WN LISG      G      F  M   + + 
Sbjct: 489 SLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKP 548

Query: 161 DHITFNSLLRACVQADDIEVGRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           + +TF  +L  C  A  I+ G+    S I   G        + +V L+G+ G ++ A  +
Sbjct: 549 NGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNL 608

Query: 220 FDEVLCR-DLVLWNVMVS 236
            + +     +++W  M+S
Sbjct: 609 IEGIPYEPSVMIWRAMLS 626


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 290/527 (55%), Gaps = 7/527 (1%)

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLISGIINCGGN---VTPYFRRMLLD 156
            N +L   +  K F     LF  +    N   +N +I  +     N       F RM+  
Sbjct: 57  NNHLLSKAIHLKNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSL 116

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           ++  D+ TF     +C     +      HS + K+    +   + +L+  Y +CG V  A
Sbjct: 117 SLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASA 176

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGT 275
           R+VFDE+  RD V WN M++ YA       A+ VF  M R +G + D  +  SL+ +CG 
Sbjct: 177 RKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGE 236

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           LG  +LGR + G V+++   L+  + ++L+ MYAK G ++ A R+FDGM A++V++WN +
Sbjct: 237 LGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAV 296

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ QNG   EA+ L   M +     +++TL ++LS+C ++      +Q+  YA + G 
Sbjct: 297 ISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGF 356

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           Q  + +  ALI+ Y+K GS+  A + F  + + +  +W ++I A A HG +KE++ +F+ 
Sbjct: 357 QHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQH 416

Query: 456 MLSHA--VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           M       RP+ I F+ +LSAC H GLV EG R F++M + + ++P  EHY+C+ DLL R
Sbjct: 417 MSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLAR 476

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            G L EA+DL+  MP +P   TLGA +GAC+   ++ + +     +LE++PS   NY + 
Sbjct: 477 AGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIIS 536

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           S +YA+   W D AR+R +MR     K PGCSWIE+   +H F + D
Sbjct: 537 SKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAGD 583



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 217/409 (53%), Gaps = 33/409 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L      HS + KL L +     + ++  Y +C       K+FDE+  R+ V+WN
Sbjct: 133 ANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWN 192

Query: 134 TLISGIIN--CGGNVTPYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           ++I+G     C       FR M   D    D ++  SLL AC +  D+E+GR +  F+++
Sbjct: 193 SMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVE 252

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G  LN ++ SAL+ +Y KCG +E ARR+FD +  RD++ WN ++S YA N + D AI +
Sbjct: 253 RGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILL 312

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F+ M+ + +  +  T ++++++C T+G+  LG+QI     ++ F  D+ VAT+L+DMYAK
Sbjct: 313 FHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAK 372

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLA 368
           +G++D+A RVF  M  KN  SWN M+     +G  +EA+ L + M    G   P+++T  
Sbjct: 373 SGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFV 432

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAF----------LSIEN--ALINAYSKCGSIA 416
            +LS+C           VHA  +  G + F            IE+   +++  ++ G + 
Sbjct: 433 GLLSAC-----------VHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLY 481

Query: 417 GALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
            A      + E PD VT  +++GA      SK+++++ E+++   +  D
Sbjct: 482 EAWDLIRKMPEKPDKVTLGALLGACR----SKKNVDIGERVMRMILEVD 526



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 149/316 (47%), Gaps = 47/316 (14%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    + G L+ G+ +   +++ G+     + + ++ +Y KC   +   ++FD M  R++
Sbjct: 231 LGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDV 290

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           +TWN +ISG    G        F  M  D V  + IT  ++L AC     +++G+++  +
Sbjct: 291 ITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEY 350

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
             + GF  + FV++AL+D+Y K G +++A+RVF ++  ++   WN M+S  A +     A
Sbjct: 351 ASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEA 410

Query: 248 IAVFNLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           +++F  M  E  G + +  TF  L+++C           +H                   
Sbjct: 411 LSLFQHMSDEGGGARPNDITFVGLLSAC-----------VHA------------------ 441

Query: 306 DMYAKNGNIDDACRVFDGMTA-----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
                 G +D+  R+FD M+        +  ++ MV    + G   EA  L+R M +   
Sbjct: 442 ------GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEK-- 493

Query: 361 CPDEVTLASILSSCGS 376
            PD+VTL ++L +C S
Sbjct: 494 -PDKVTLGALLGACRS 508


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/571 (32%), Positives = 317/571 (55%), Gaps = 3/571 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L   A    L+ G ++H  I++ G    + +   ++++Y KC +       F  + 
Sbjct: 109 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 168

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W  +I+  +           +RRM LD V  + IT  ++  A      +  G+ 
Sbjct: 169 HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKF 228

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           ++S +       +  V ++ ++++G  G + DARR+F++++ RD+V WN++++ Y  N  
Sbjct: 229 IYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNEN 288

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  ++ +G+K +  TF  ++N   +L S   G+ IH LV +  +D DV+VAT+
Sbjct: 289 FGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATA 348

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ +Y +      A ++F  M +K+V++W  M V + QNG  +EA++L ++M      P 
Sbjct: 349 LMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPT 408

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL ++L +C  L+   + RQ+H++ I+NG +  + +E ALIN Y KCG +A A   F 
Sbjct: 409 SATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFE 468

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + D++ W S++GAYA HG   E++++F +M     + D+++F+ VLSA SH G V++
Sbjct: 469 KMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTD 528

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-IEPRSDTLGAFIGA 542
           G +YF  M+ D+ I P  E Y C+ DLLGR G + EA D++  +    P        +GA
Sbjct: 529 GYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGA 588

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+ H     AK AAE++LE +PS    Y ++SNVYA+   W  V R+RK+MR     K P
Sbjct: 589 CRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEP 648

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G S IEI   +H F+  DRSHP+   +YA L
Sbjct: 649 GRSSIEILNRVHEFLEGDRSHPRRHPIYAEL 679



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 242/489 (49%), Gaps = 10/489 (2%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +F+   L+  +    +  G+++H H+   G      +   ++ +Y +C +  + +++F+ 
Sbjct: 6   AFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEI 65

Query: 124 MRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +  +++  W  +I GI    G+       F +M  ++V    +T+ ++L AC   + ++ 
Sbjct: 66  LERKDVFAWTRMI-GIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKD 124

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G  +H  IL+ GF  + FV +AL+++Y KCG V  A   F  +  RD+V W  M++    
Sbjct: 125 GMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQ 184

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +     A  ++  M+L+G+  +  T  ++ N+ G       G+ I+ LV  +  + DV V
Sbjct: 185 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRV 244

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             S ++M+   G + DA R+F+ M  ++VV+WN ++  + QN +  EAV+L   + Q   
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             +++T   +L+   SL+   + + +H    + G    + +  AL++ Y +C +   A +
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWK 364

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D++TWT +  AYA +G  KE++++F++M     RP S   + VL  C+H   
Sbjct: 365 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAA 424

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GA 538
           + +G R  +  I +     +    T L ++ G+ G + EA  +   M    + D L   +
Sbjct: 425 LQKG-RQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKM---AKRDILVWNS 480

Query: 539 FIGACKVHG 547
            +GA   HG
Sbjct: 481 MLGAYAQHG 489



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 205/416 (49%), Gaps = 7/416 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   F +LL+ C  A +++ GRR+H  +   GF  N  V   L+ +Y +CG V +A++VF
Sbjct: 4   DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  +D+  W  M+  Y      D A+ +F  M+ E +     T+ +++N+C +  S K
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G +IHG +++Q F+ DV V T+L++MY K G++  A   F  +  ++VVSW  M+    
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 183

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+     A  L R M      P+++TL ++ ++ G      E + +++      +++ + 
Sbjct: 184 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVR 243

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N+ +N +   G +  A + F  + + D+VTW  +I  Y  +    E++ +F ++    
Sbjct: 244 VMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDG 303

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++ + I F+ +L+  +    +++G +  + ++ +     D    T L  L GR     +A
Sbjct: 304 IKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQA 362

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE--KLLELEPSKPVNYALVS 574
           + +   M     S  +  +   C  +   G  K A +  + ++LE  +P +  LV+
Sbjct: 363 WKIFVDMG----SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVA 414



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 1/268 (0%)

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K D   F +L+  C +  +   GR++H  V  + F+ + LV   L+ MYA+ G++ +A +
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +  K+V +W  M+  + Q GD   A+ +   M +    P +VT  +IL++C S   
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             +  ++H   ++ G +  + +  ALIN Y+KCGS+ GA   F  ++  D+V+WT++I A
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
              H     +  ++ +M    V P+ I    V +A      +SEG ++   ++S   +  
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMES 240

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           D        ++ G  GLL +A  L   M
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDM 268



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 4/201 (1%)

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           F PD     ++L  C S       R+VH +    G +    +   LI  Y++CGS+  A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           Q F  ++  D+  WT +IG Y   G    ++ +F +M    V P  + ++ +L+AC+   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGA 538
            + +G+     ++       D    T L ++  + G +  A+D    +  E R   +  A
Sbjct: 121 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRL--EHRDVVSWTA 177

Query: 539 FIGACKVHGSIGLAKWAAEKL 559
            I AC  H    LA+W   ++
Sbjct: 178 MIAACVQHDQFALARWLYRRM 198


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 328/601 (54%), Gaps = 16/601 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A  G L  G+++H+  +K G  + + + N ++++Y KC   +D + +F+ M 
Sbjct: 204 FASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNTL++G+    C       F        ++   T+ ++++ C     + + R+
Sbjct: 264 TRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ 323

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LHS +LK GF L   V +AL D Y KCG + DA  +F      R++V W  ++S     C
Sbjct: 324 LHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS----GC 379

Query: 243 LGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           + +G    A+ +F+ MR + +  + FT+S+++ +  ++    L  QIH  VIK ++    
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIP 435

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V T+L+  Y+K G+ +DA  +F  +  K+VV+W+ M+    Q GD   A  L   M   
Sbjct: 436 SVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 359 SFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P+E T++S++ +C   S   +  RQ HA +IK      + + +AL++ YS+ G+I  
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F    + DLV+W S+I  YA HG S ++IE F +M +  ++ D + FL V+  C+H
Sbjct: 556 AQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTH 615

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV EG +YF+ M+ D+ I P  EHY C+ DL  R G L E   L+  MP    +    
Sbjct: 616 NGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWR 675

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             +GAC+VH ++ L K++A+KLL LEP     Y L+SN+YA+   W +   +RK+M    
Sbjct: 676 TLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRK 735

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
             K  GCSWI+I  ++H+F++ D+SHP +  +Y  L  +   ++++  S + + +  ++ 
Sbjct: 736 VKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIA 795

Query: 658 E 658
           E
Sbjct: 796 E 796



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 225/421 (53%), Gaps = 10/421 (2%)

Query: 82  GKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G+QLH   +K G    ++S    ++ +Y+KC +  +  ++F+ M  +N+VTW +L++G  
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 141 NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
           +      V   F RM  + +  +  TF S+L A      +++G+R+H+  +K G   + F
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVF 237

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+++Y KCG VEDA+ VF+ +  RD+V WN +++   LN     A+ +F+  R   
Sbjct: 238 VCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            K    T+++++  C  L    L RQ+H  V+K  F L   V T+L D Y+K G + DA 
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADAL 357

Query: 319 RVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +F   T ++NVVSW  ++ G  QNGD   AV L   M +    P+E T +++L +    
Sbjct: 358 NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA---- 413

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S+S    Q+HA  IK   Q   S+  AL+ +YSK GS   AL  F  +++ D+V W++++
Sbjct: 414 SLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAML 473

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-HGGLVSEGLRYFNLMIS-DY 495
             +A  G  + +  +F KM    ++P+      V+ AC+     V +G ++  + I   Y
Sbjct: 474 SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRY 533

Query: 496 H 496
           H
Sbjct: 534 H 534



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 199/398 (50%), Gaps = 14/398 (3%)

Query: 56  HESTHS----AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
           HES  +      S Y+  +K+ A    L   +QLHS ++K G     ++   +   Y KC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 112 KAFDDMEKLFD-EMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSL 168
               D   +F      RN+V+W  +ISG I  G        F RM  D V  +  T++++
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L+A +      +  ++H+ ++K  +     V +AL+  Y K G  EDA  +F  +  +D+
Sbjct: 411 LKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDV 466

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHG 287
           V W+ M+SC+A     +GA  +FN M ++G+K + FT SS++++C    +    GRQ H 
Sbjct: 467 VAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHA 526

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           + IK  +   + V+++LV MY++ GNID A  VF+  T +++VSWN+M+ G+ Q+G   +
Sbjct: 527 ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMK 586

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALI 406
           A++  R M       D VT  +++  C    +  E +Q     +++  +   +     ++
Sbjct: 587 AIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMV 646

Query: 407 NAYSKCGSIAGALQCFGSVKEP-DLVTWTSIIGAYAFH 443
           + YS+ G +   +     +  P   + W +++GA   H
Sbjct: 647 DLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVH 684



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 171/319 (53%), Gaps = 2/319 (0%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDA 216
           V +D  T + +L+AC    D  +G +LH   +K G         ++LVD+Y KCG V + 
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEG 154

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF+ +  +++V W  +++  A   +    +A+F  MR EG+  + FTF+S++++  + 
Sbjct: 155 IEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQ 214

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+  LG+++H   +K      V V  SL++MYAK G ++DA  VF+ M  +++VSWNT++
Sbjct: 215 GALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM 274

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   N    EA++L  +         + T A+++  C +L      RQ+H+  +K+G  
Sbjct: 275 AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFH 334

Query: 397 AFLSIENALINAYSKCGSIAGALQCFG-SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              ++  AL +AYSKCG +A AL  F  +    ++V+WT+II     +G    ++ +F +
Sbjct: 335 LTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSR 394

Query: 456 MLSHAVRPDSIAFLEVLSA 474
           M    V P+   +  +L A
Sbjct: 395 MREDRVMPNEFTYSAMLKA 413



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 164/340 (48%), Gaps = 5/340 (1%)

Query: 216 ARRVFDEVLCRDLVLW-NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           AR   DE+  RD  +  N ++  YA   +    +  F++ R  G+  D  T S ++ +C 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 275 TLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
           ++    LG Q+H L +K   D  +V   TSLVDMY K G++ +   VF+GM  KNVV+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +++ G        E + L   M      P+  T AS+LS+  S       ++VHA ++K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G ++ + + N+L+N Y+KCG +  A   F  ++  D+V+W +++     +    E++++F
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS-DYHILPDSEHYTCLTDLLG 512
            +  +   +     +  V+  C++   ++   +  + ++   +H+  +    T L D   
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYS 348

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           + G L +A ++ +         +  A I  C  +G I LA
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 283/525 (53%), Gaps = 35/525 (6%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FD    +N+V +N +I   +N    V     F+ ML      DH TF  +L+AC   D+
Sbjct: 93  IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           + VG ++H  I+KVG   N F+ +ALV +YGKCG + +AR+V D++  RD+V WN MV+ 
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           YA +   D A+ +   M    +  D  T +SL                            
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHDAGTMASL---------------------------- 244

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
                S V  Y    N+     +F+ MT KN++SWN M+  +  N    EAV L   M +
Sbjct: 245 -----SPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEE 299

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               PD VT+AS+L +CG LS     R++H Y  K  +Q  L +ENAL++ Y+KCG +  
Sbjct: 300 CGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEE 359

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  ++  D+V+WTS++ AY   G   +++ +F KML     PDSIAF+ VLSACSH
Sbjct: 360 ARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSH 419

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GL+ +G  YF +M   Y I+P  EH+ C+ DL GR G + EAY  +  MP+EP     G
Sbjct: 420 TGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWG 479

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           A + AC+VH  + +   AA+ L +L P +   Y L+SN+YA    W DV  +R  M+   
Sbjct: 480 ALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIG 539

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
             KVPG S +E+ G++HTF++ D+ HPQA ++Y  L  + G M+E
Sbjct: 540 IKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKE 584



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 194/417 (46%), Gaps = 43/417 (10%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +   LK  +    L+ G Q+H  I+K+GL   L + N ++ +Y KC    +  K+ D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           +M  R++V+WN++++G    G                     F+  L  C + D      
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSG--------------------QFDDALEICKEMDS----- 231

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
                 L +        S + V  Y     V+    +F+ +  ++L+ WNVM++ Y  N 
Sbjct: 232 ------LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNS 285

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           + + A+++F  M   GMK D  T +SL+ +CG L +  LGR++H  + K +   ++L+  
Sbjct: 286 MPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLEN 345

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK G +++A  VFD M  ++VVSW +M+  +G++G G +AV L   ML     P
Sbjct: 346 ALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNP 405

Query: 363 DEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           D +   S+LS+C    +  + R         Y I   ++ F      +++ + + G +  
Sbjct: 406 DSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA----CMVDLFGRAGEVEE 461

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           A      +  EP+   W +++ A   H  SK  I +    L   + P    +  +LS
Sbjct: 462 AYSFIKQMPMEPNERVWGALLSACRVH--SKMDIGLVAADLLFQLAPKQSGYYVLLS 516


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 280/474 (59%), Gaps = 3/474 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           + +M   N+  ++ TF  +  AC   ++I + R  H  + K+G   +    +++V +Y +
Sbjct: 105 YHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFR 164

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSS 268
           CG    AR+VFDE+  +DLV WN ++S YA       A+ VF  +R E G + D  +  S
Sbjct: 165 CGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVS 224

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++ +CG LG  +LGR + G V+++   ++  + ++L+ MY+K G +  + R+FDGM +++
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRD 284

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            ++WN  +  + QNG   EA+ L   M +    P++VTL ++LS+C S+      +Q+  
Sbjct: 285 FITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDE 344

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           YA   G+Q  + +  ALI+ Y+KCGS+  A + F  +   +  +W ++I A A HG +KE
Sbjct: 345 YATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKE 404

Query: 449 SIEVFEKMLSH--AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           ++ +FE+M     + RP+ I F+ +LSAC H GLV EG R F++M + + ++P  EHY+C
Sbjct: 405 ALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSC 464

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + DLL R G L EA+D++  MP +P + TLGA   AC+   ++ + +   + LLEL+PS 
Sbjct: 465 MVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSN 524

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
             NY + S +Y +   W D AR+R +MR+N   K PGCSWIE+  ++  F+S D
Sbjct: 525 SGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGD 578



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 216/419 (51%), Gaps = 38/419 (9%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++  +  H  + KLGL N     N ++ +Y +C       K+FDE+  +++V+WN+L+SG
Sbjct: 133 IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSG 192

Query: 139 IINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
               G        F R+  ++    D ++  S+L AC +  D+E+GR +  F+++ G  +
Sbjct: 193 YAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV 252

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N ++ SAL+ +Y KCG +  +RR+FD +  RD + WN  +S YA N + D AI++F+ M+
Sbjct: 253 NSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK 312

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G+  +  T ++++++C ++G+  LG+Q+      +    D+ VAT+L+DMYAK G+++
Sbjct: 313 ENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLE 372

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSS 373
            A RVF+ M  KN  SWN M+     +G  +EA+ L   M    GS  P+++T  S+LS+
Sbjct: 373 SAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSA 432

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C           VHA  +  G + F  +                    FG V  P +  +
Sbjct: 433 C-----------VHAGLVDEGYRLFDMMST-----------------LFGLV--PKIEHY 462

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           + ++   +  G   E+ +V EKM     +PD++    + SAC     V  G R   +++
Sbjct: 463 SCMVDLLSRAGHLYEAWDVIEKM---PEKPDNVTLGALHSACQRKKNVDIGERVIQMLL 518



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 11/303 (3%)

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +++ M+   +  + FTF  +  +C  L   ++ R  H  V K   D D     S+V MY 
Sbjct: 104 LYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYF 163

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLA 368
           + G    A +VFD +T K++VSWN+++ G+ + G  REAV++   + + S F PDE++L 
Sbjct: 164 RCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLV 223

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+L +CG L      R V  + ++ G++    I +ALI+ YSKCG +  + + F  +   
Sbjct: 224 SVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSR 283

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D +TW + I AYA +G++ E+I +F  M  + V P+ +    VLSAC+  G +  G +  
Sbjct: 284 DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ-- 341

Query: 489 NLMISDYHILPDSEH----YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
              + +Y      +H     T L D+  + G L  A  +   MP      +  A I A  
Sbjct: 342 ---MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP-RKNDASWNAMISALA 397

Query: 545 VHG 547
            HG
Sbjct: 398 SHG 400



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 47/310 (15%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
            + G L+ G+ +   +++ G+     + + ++ +Y KC       ++FD M  R+ +TWN
Sbjct: 230 GELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWN 289

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
             IS     G        F  M  + V  + +T  ++L AC     +++G+++  +    
Sbjct: 290 AAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHR 349

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G   + FV++AL+D+Y KCG +E A+RVF+++  ++   WN M+S  A +     A+++F
Sbjct: 350 GLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLF 409

Query: 252 NLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
             M  EG   + +  TF SL+++C           +H                       
Sbjct: 410 ERMSDEGGSARPNDITFVSLLSAC-----------VHA---------------------- 436

Query: 310 KNGNIDDACRVFDGMTA-----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
             G +D+  R+FD M+        +  ++ MV    + G   EA  ++  M +    PD 
Sbjct: 437 --GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK---PDN 491

Query: 365 VTLASILSSC 374
           VTL ++ S+C
Sbjct: 492 VTLGALHSAC 501



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A  G L  GKQ+  +    GL + + +   ++ +Y KC + +  +++F++M  
Sbjct: 324 TAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPR 383

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLD--NVRLDHITFNSLLRACVQADDIEVGR 182
           +N  +WN +IS + + G        F RM  +  + R + ITF SLL ACV A  ++ G 
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGY 443

Query: 183 RLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV 223
           RL   ++   FGL   +   S +VDL  + G + +A  V +++
Sbjct: 444 RLFD-MMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 307/572 (53%), Gaps = 40/572 (6%)

Query: 102  NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVR 159
            N +L  + +     D   LF  +   +  ++N +I+ +   + G +   +   M  D+  
Sbjct: 830  NALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFV 889

Query: 160  LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            L+  +F S L AC    D   G ++H+ + K     + ++ SAL+D+Y KC + E+ARRV
Sbjct: 890  LNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRV 949

Query: 220  FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
            F+ +  R++V WN +++CY  N     A+ +F  M   G   D  T +S++++C  L + 
Sbjct: 950  FEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAAD 1009

Query: 280  KLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNG-------------------------- 312
            + GRQ+H  V+K   F  D++++ +LVDMYAK G                          
Sbjct: 1010 REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITG 1069

Query: 313  -----NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
                 N++DA  VF  M  KNV++WN ++  + QNG+  EA++L   + + S  P   T 
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129

Query: 368  ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE------NALINAYSKCGSIAGALQC 421
             ++L++CG+++     +Q H + +K G +     E      N+L++ Y K GSI    + 
Sbjct: 1130 GNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189

Query: 422  FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            F  +   D V+W ++I  +A +G +K+++ +FE+ML     PDS+  + VLSAC H GLV
Sbjct: 1190 FERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLV 1249

Query: 482  SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
             EG RYF  M  D+ I+P  +HYTC+ DLLGR G L E  +L+  M +EP +    + +G
Sbjct: 1250 EEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLG 1309

Query: 542  ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
            +C++H ++ + +WAA KL EL+P     Y L+SN+YA    W DV R+R  M+     K 
Sbjct: 1310 SCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQ 1369

Query: 602  PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            PGCSWIEI  ++  F++ D  HP    ++A+L
Sbjct: 1370 PGCSWIEIGRKVSVFLARDNGHPCKNEIHAIL 1401



 Score =  241 bits (615), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 149/524 (28%), Positives = 260/524 (49%), Gaps = 37/524 (7%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--I 139
            +QLH HI K    + + L   ++ VY  C    D  + FD++   N ++WN ++    +
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHL 229

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              G      F RML   VR    T +  + AC   + +E GR +H+F+L+ G+  +  V
Sbjct: 230 AGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHV 289

Query: 200 SSALVDLYGKCGFVE-------------------------------DARRVFDEVLCRDL 228
            S++VD+Y KCG ++                               DA+RVF+ +  R+L
Sbjct: 290 RSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNL 349

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN M++ Y  +    GA+ +F  MR E  + D  T  S++++C  +     G ++H  
Sbjct: 350 VSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAF 409

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRV--FDGMTAKNVVSWNTMVVGFGQNGDGR 346
            IK  F    ++  +LV MY+K G +  A R+  F+  + ++  SWN+++ G+ ++    
Sbjct: 410 AIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSE 469

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
            A+  L  M Q    P++ T +S L++C ++ +  +  Q+HAY I+ G +    + + LI
Sbjct: 470 AALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLI 528

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y KC     +++ F +    D++ W S+I   A+ G  +  +++F++M    ++ DS+
Sbjct: 529 DMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSV 588

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            FL  L +C   G V  G  YF LM+ D  I+P  EHY C+ +LLG+ G +VE  D +  
Sbjct: 589 TFLGALVSCISEGHVRLGRSYFTLMM-DESIIPRIEHYECMIELLGKHGCMVELEDFVEH 647

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           MP EP +         C+ +G+  L + AA+ + +  P  PV +
Sbjct: 648 MPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQF 691



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/478 (30%), Positives = 233/478 (48%), Gaps = 43/478 (8%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-------LQNQVLHVYVKCKAFDDM 117
            Y+  L+++   G L   +++ +H+      +  S       L N+ +     C +  D 
Sbjct: 45  LYASLLRLATSHGSLSAARRIATHLAASSSASSTSRSSVPTFLFNRAIESLAACGSVADA 104

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            +LFD M +R+  +WN +I+     G        F  M    +R    T  S+L  C + 
Sbjct: 105 RELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAEC 164

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D+   R+LH  I K  F  N  + +ALVD+YG C  + DARR FD++L  + + WNV+V
Sbjct: 165 LDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIV 224

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
             Y L  +GD A+ +F  M   G++   +T S  V +C    + + GR IH  V++  ++
Sbjct: 225 RRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYE 284

Query: 296 LDVLVATSLVDMYAKNGNID-------------------------------DACRVFDGM 324
             V V +S+VDMYAK G +D                               DA RVF+GM
Sbjct: 285 HHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGM 344

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             +N+VSWN M+ G+ ++ D   A+ L + M Q +   D +TL S+LS+C  +    +  
Sbjct: 345 KERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGE 404

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA--LQCFGSVKEPDLVTWTSIIGAYAF 442
           +VHA+AIK G  +   ++NAL+  YSKCG +  A  L  F    E D  +W S+I  Y  
Sbjct: 405 EVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYER 464

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           H +S+ ++    KM S  V P+   F   L+AC++  L+ +G++    MI   + + D
Sbjct: 465 HSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDD 521



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 216/425 (50%), Gaps = 43/425 (10%)

Query: 61   SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
            +A+SF S AL   A     + G Q+H+ + K      + + + +L +Y KC+  ++  ++
Sbjct: 891  NAYSFAS-ALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRV 949

Query: 121  FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
            F+ M  RNIV+WN+LI+     G  G     F  M+      D +T  S++ AC      
Sbjct: 950  FEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAAD 1009

Query: 179  EVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGF------------------------- 212
              GR++H+ ++K   F  +  +S+ALVD+Y KCG                          
Sbjct: 1010 REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITG 1069

Query: 213  ------VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
                  VEDA+ VF +++ ++++ WNV+++ YA N   + A+ +F  ++ E +   ++T+
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129

Query: 267  SSLVNSCGTLGSSKLGRQIHGLVIKQSF------DLDVLVATSLVDMYAKNGNIDDACRV 320
             +++N+CG +   +LG+Q H  V+K+ F      + DV V  SLVDMY K G+IDD  +V
Sbjct: 1130 GNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189

Query: 321  FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
            F+ M A++ VSWN M+VG  QNG  ++A+ L   ML     PD VT+  +LS+CG   + 
Sbjct: 1190 FERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLV 1249

Query: 381  CETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIG 438
             E R+   +    +G+         +I+   + G +    +    +  EPD V W S++G
Sbjct: 1250 EEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLG 1309

Query: 439  AYAFH 443
            +   H
Sbjct: 1310 SCRLH 1314



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 176/349 (50%), Gaps = 39/349 (11%)

Query: 189  LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL-------- 240
            LK  F    F+ + LV  Y + G + DARRVFDE+   +   +N ++S +A         
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 241  ----------NCLGDGAIAVFN--------LMRLEGMKGDYF-----TFSSLVNSCGTLG 277
                       C  +  IA           L+ L  M  D F     +F+S +++C    
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 278  SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             S+ G Q+H LV K     DV + ++L+DMYAK    ++A RVF+ M  +N+VSWN+++ 
Sbjct: 907  DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966

Query: 338  GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQ 396
             + QNG   EA+ L   M++  F PDEVTLAS++S+C  L+   E RQVHA  +K +  +
Sbjct: 967  CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026

Query: 397  AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
              + + NAL++ Y+KCG    A   F  +    +V+ TS+I  YA     +++  VF +M
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQM 1086

Query: 457  LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
                V  + IA+  +++A +  G   E LR F + +    + P   HYT
Sbjct: 1087 ----VEKNVIAWNVLIAAYAQNGEEEEALRLF-VRLKRESVWP--THYT 1128



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 125/235 (53%), Gaps = 3/235 (1%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL--FDEMRVRNIVTWNTLISG 138
           +G+++H+  +K G  +   L+N ++ +Y KC      E+L  F+    R+  +WN+LISG
Sbjct: 402 KGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISG 461

Query: 139 I-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              +       Y    +   V  +  TF+S L AC     ++ G ++H+++++ G+ ++ 
Sbjct: 462 YERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDD 521

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            + S L+D+Y KC   + + R+F+    RD++LWN M+   A +  G+  + +F+ M+ +
Sbjct: 522 ILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQ 581

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
           G+K D  TF   + SC + G  +LGR    L++ +S    +     ++++  K+G
Sbjct: 582 GIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHG 636



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 12/230 (5%)

Query: 57   ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK------LGLCNKLSLQNQVLHVYVK 110
            ES    H  Y   L        LQ G+Q H H++K       G  + + + N ++ +Y+K
Sbjct: 1120 ESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 1179

Query: 111  CKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSL 168
              + DD  K+F+ M  R+ V+WN +I G    G   +    F RML      D +T   +
Sbjct: 1180 TGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGV 1239

Query: 169  LRACVQADDIEVGRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCR 226
            L AC  +  +E GRR   S     G   +    + ++DL G+ G +++   +  E+ +  
Sbjct: 1240 LSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEP 1299

Query: 227  DLVLW-NVMVSCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
            D VLW +++ SC     +  G  A   L  L+    G Y   S++    G
Sbjct: 1300 DAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELG 1349



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
            S +S AL   A    L+QG Q+H+++++ G      L++ ++ +Y KC+ FD   ++F+
Sbjct: 486 QSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFE 545

Query: 123 EMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
               R+++ WN++I G    G        F  M    ++ D +TF   L +C+    + +
Sbjct: 546 ARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRL 605

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           GR   + ++             +++L GK G
Sbjct: 606 GRSYFTLMMDESIIPRIEHYECMIELLGKHG 636


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 304/558 (54%), Gaps = 6/558 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+QG  LH+  +K    + + + N +L++Y KC+   +  ++FDEM  RN+V+W+ +ISG
Sbjct: 19  LRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMISG 78

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G  ++    F ++   N+  +   + S++ AC     +  G+++H   LK G    
Sbjct: 79  YEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSV 135

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FVS+AL+ +Y KCG   DA   ++E L  + V +N +++ +  N   D    V  +M  
Sbjct: 136 SFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQ 195

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           +G   D FTF  L+ +C +    K G  +H   IK   +    +   ++ MY+K   +++
Sbjct: 196 DGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEE 255

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCG 375
           A + F  +  K+++SWNT +       D  +A++  ++ML +    PDE T AS L++C 
Sbjct: 256 AEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACS 315

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L+  C  +Q+H + I+  +   +   NALIN Y+KCG IA A   F  ++  +LV+W +
Sbjct: 316 GLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNT 375

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  +  HG   ++ E+F KM +  V+PDS+ F+ +L+A +H GLV EGL YFN M   Y
Sbjct: 376 MIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETY 435

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I P+ EH++CL DLLGR G L EA + +   P    +  LG+ + AC++HG +   K  
Sbjct: 436 GISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCF 495

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A +LL+L+P+    Y L+SN+YAS+  W  VA   K+++ +   K PG S IE+ G    
Sbjct: 496 ARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIEVNGTFEK 555

Query: 616 FVSSDRSHPQAVHMYAML 633
           F   D SH +   +  ML
Sbjct: 556 FTVVDFSHSRIEEIMDML 573



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 165/343 (48%), Gaps = 20/343 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  +   A    L QGKQ+H   +K GL +   + N ++ +Y+KC    D    ++E  
Sbjct: 104 YASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEAL 163

Query: 126 VRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
             N V +N LI+G +    N  P       R M  D    D  TF  LL  C   DD++ 
Sbjct: 164 ELNPVAYNALITGFVE---NQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKR 220

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G  LH   +K+      F+ + ++ +Y K   +E+A + F  +  +DL+ WN  +S  + 
Sbjct: 221 GELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSH 280

Query: 241 NCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
               + A+  F  M  E  ++ D FTF+S + +C  L S   G+QIHG +I+     DV 
Sbjct: 281 CNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVG 340

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
              +L++MYAK G I  A  +F  M  +N+VSWNTM+ GFG +G G +A +L   M    
Sbjct: 341 AGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMG 400

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
             PD VT   +L++             HA  +  G+  F S+E
Sbjct: 401 VKPDSVTFVGLLTASN-----------HAGLVDEGLVYFNSME 432



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 182/362 (50%), Gaps = 5/362 (1%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           SL+  C +   +  G  LH+  +K     +  VS+ +++LY KC  + +AR+VFDE+  R
Sbjct: 8   SLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSER 67

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           +LV W+ M+S Y    +G+   A+    +L  +  +Y  ++S++++C +L     G+QIH
Sbjct: 68  NLVSWSAMISGY--EQIGEPISALGLFSKLNIVPNEY-VYASVISACASLKGLVQGKQIH 124

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           G  +K   D    V+ +L+ MY K G   DA   ++     N V++N ++ GF +N    
Sbjct: 125 GQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPD 184

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           +  ++LR M Q  F PD  T   +L +C S         +H   IK  + +   I N +I
Sbjct: 185 KGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLII 244

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDS 465
             YSK   +  A + F S++E DL++W + I + +     ++++E F++ML+   VRPD 
Sbjct: 245 TMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDE 304

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
             F   L+ACS    +  G +    +I    +  D      L ++  + G + +AY + +
Sbjct: 305 FTFASALAACSGLASMCNGKQIHGHLIRT-RLYQDVGAGNALINMYAKCGCIAKAYYIFS 363

Query: 526 SM 527
            M
Sbjct: 364 KM 365



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL   +    +  GKQ+H H+++  L   +   N ++++Y KC        +F +M 
Sbjct: 307 FASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKME 366

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N+V+WNT+I+G  N   GG     F +M    V+ D +TF  LL A   A  ++ G  
Sbjct: 367 HQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEG-L 425

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARR 218
           ++   ++  +G++  +   S L+DL G+ G + +A+ 
Sbjct: 426 VYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKE 462



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + S++  C       +   +HA AIK   ++ + + N ++N Y+KC  +  A Q F  + 
Sbjct: 6   VGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMS 65

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC-SHGGLV 481
           E +LV+W+++I  Y   G    ++ +F K+    + P+   +  V+SAC S  GLV
Sbjct: 66  ERNLVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLV 118


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/579 (33%), Positives = 316/579 (54%), Gaps = 17/579 (2%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E   S +  +   +K   +   L  G+++H  ++K+G    + + N ++ +Y+K    + 
Sbjct: 118 EGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIEL 177

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQ 174
            EK+FDEM VR++V+WN+++SG    G  ++    F+ ML    + D     S L AC  
Sbjct: 178 AEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSI 237

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              +  G  +H  +++    L+  V ++L+D+YGKCG V+ A RVF+ +  +++V WN M
Sbjct: 238 EHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAM 297

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +                 +   + +  D  T  +L+ SC   G+   G+ IHG  I++ F
Sbjct: 298 IG---------------GMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMF 342

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
              +++ T+LVDMY K G +  A  VF+ M  KN+VSWNTMV  + QN   +EA+K+ + 
Sbjct: 343 LPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQH 402

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           +L     PD +T+AS+L +   L+   E +Q+H+Y +K G+ +   I NA++  Y+KCG 
Sbjct: 403 ILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGD 462

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  A + F  +   D+V+W ++I AYA HG  + SI+ F +M     +P+   F+ +L+A
Sbjct: 463 LQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTA 522

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           CS  GL+ EG  +FN M  +Y I P  EHY C+ DLLGR G L EA   +  MP+ P + 
Sbjct: 523 CSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTAR 582

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
             G+ + A + H  + LA+ AA  +L L+      Y L+SN+YA    W DV R++ +M+
Sbjct: 583 IWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMK 642

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +    K  GCS ++I G   +F++ DRSH     +Y +L
Sbjct: 643 EQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVL 681



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 204/367 (55%), Gaps = 17/367 (4%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           +F++M   +   WN +I G  N G       ++ RM  + +R D+ TF  +++AC +   
Sbjct: 80  MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLA 139

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           + VG+++H  ++K+GF L+ +V + L+D+Y K GF+E A +VFDE+  RDLV WN MVS 
Sbjct: 140 LMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSG 199

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y ++  G  ++  F  M   G K D F   S + +C      + G +IH  VI+   +LD
Sbjct: 200 YQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELD 259

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           ++V TSL+DMY K G +D A RVF+ + +KN+V+WN M+ G  ++               
Sbjct: 260 IMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQED--------------- 304

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               PD +T+ ++L SC       E + +H +AI+     +L +E AL++ Y KCG +  
Sbjct: 305 DKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKL 364

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  + E ++V+W +++ AY  +   KE++++F+ +L+  ++PD+I    VL A + 
Sbjct: 365 AEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAE 424

Query: 478 GGLVSEG 484
               SEG
Sbjct: 425 LASRSEG 431



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 165/323 (51%), Gaps = 21/323 (6%)

Query: 210 CGFVE-----DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           CGFVE     +A  +F+++   D  +WNV++  Y  N L   AI  +  M  EG++ D F
Sbjct: 66  CGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNF 125

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           TF  ++ +CG L +  +G+++HG +IK  FDLDV V   L+DMY K G I+ A +VFD M
Sbjct: 126 TFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEM 185

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             +++VSWN+MV G+  +GDG  ++   ++ML+     D   + S L +C          
Sbjct: 186 PVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGM 245

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           ++H   I++ ++  + ++ +LI+ Y KCG +  A + F  +   ++V W ++IG     G
Sbjct: 246 EIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIG-----G 300

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
           + ++            V PD I  + +L +CS  G + EG       I     LP     
Sbjct: 301 MQEDD----------KVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKM-FLPYLVLE 349

Query: 505 TCLTDLLGRVGLLVEAYDLLASM 527
           T L D+ G+ G L  A  +   M
Sbjct: 350 TALVDMYGKCGELKLAEHVFNQM 372


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/549 (33%), Positives = 302/549 (55%), Gaps = 7/549 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVL-HVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           QLH+  ++LGL    +  +  L H Y++     D  + FDEMR R++  WN ++SG+   
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                    F RM+++ V  D +T +S+L  CV   D  +   +H + +K G     FV 
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +A++D+YGK G +E+ R+VFD +  RDLV WN ++S +        A+ +F  MR  G+ 
Sbjct: 209 NAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVS 268

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACR 319
            D  T  SL ++    G    GR +H  ++++ +D+ D++   ++VDMYAK   I+ A R
Sbjct: 269 PDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQR 328

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLS 378
           +FD M  ++ VSWNT++ G+ QNG   EA+ +   M +     P + T  S+L +   L 
Sbjct: 329 MFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLG 388

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              +  ++HA +IK G+   + +   +I+ Y+KCG +  A+  F          W ++I 
Sbjct: 389 ALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVIS 448

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
               HG   +++ +F +M    + PD + F+ +L+ACSH GLV +G  +FN+M + Y I 
Sbjct: 449 GVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIK 508

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P ++HY C+ D+ GR G L +A+D + +MPI+P S   GA +GAC++HG++ + K A++ 
Sbjct: 509 PIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQN 568

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L EL+P     Y L+SN+YA    W  V  +R ++R     K PG S IE+   ++ F S
Sbjct: 569 LFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYS 628

Query: 619 SDRS--HPQ 625
            ++   HPQ
Sbjct: 629 GNQMNIHPQ 637



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE        +   L   +  G LQQG ++H+  +K GL   + +   V+ +Y KC   D
Sbjct: 367 HEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLD 426

Query: 116 DMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           +   LF++   R+   WN +IS  G+   G      F +M  + +  DH+TF SLL AC 
Sbjct: 427 EAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACS 486

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV----LCRD 227
            A  ++ GR   + +++  +G+       + +VD++G+ G ++DA   FD +    +  D
Sbjct: 487 HAGLVDQGRNFFN-MMQTAYGIKPIAKHYACMVDMFGRAGQLDDA---FDFIRNMPIKPD 542

Query: 228 LVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
             +W  ++ +C     +  G +A  NL  L+     Y+   S  N    +G      ++ 
Sbjct: 543 SAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMS--NMYAKVGKWDGVDEVR 600

Query: 287 GLVIKQSF 294
            LV +Q+ 
Sbjct: 601 SLVRRQNL 608


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/642 (31%), Positives = 322/642 (50%), Gaps = 64/642 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDME 118
           ++  +K     G  +   QLH+ + KLG   +  +QN V+ +YVKC         F D+E
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 119 K------------------------LFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRR 152
           +                        +F+ M  R+ V+WNTLIS     G  V     F  
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVE 268

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M       + +T+ S+L AC    D++ G  LH+ IL++   L+    + L+D+Y KCG 
Sbjct: 269 MCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGC 328

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++ A+RVF  +   D + WN +++      LG+ A+ +FN MR   +  D F   +++  
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGV 388

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF----------- 321
           C     +  G  +HG  IK        V  +++ MYAK G+ D A  VF           
Sbjct: 389 CSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISW 448

Query: 322 --------------------DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
                               D M  +N+V+WN+M+  + QNG   E +KL   M      
Sbjct: 449 TAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ 508

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD +T  + + +C  L+I     QV  +A K G+   +S+ N+++  YS+CG I  A   
Sbjct: 509 PDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNT 568

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F S+ + DL++W +++ A+A +GL  + I+ FE ML    +P+ I+++ VLS CSH GLV
Sbjct: 569 FDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLV 628

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           +EG  YF+ M   + I P +EH++C+ DLLGR GLL +A DL+  MP +P +    A +G
Sbjct: 629 AEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLG 688

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           +C+VH  + LA+ AA+KL+EL+      Y L+SN+Y+      +VA +RK+M+       
Sbjct: 689 SCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTS 748

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
            GCSWIE+   +H F   + SHPQ   +Y  L  +  ++E+ 
Sbjct: 749 RGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDT 790



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 213/455 (46%), Gaps = 70/455 (15%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN 157
           N ++   V      D EKLFDEM  RV++ V+W T+ISG    G +   +  F  M+ D 
Sbjct: 78  NTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDT 137

Query: 158 ----VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
                  D  +F S+++AC    D  +  +LH+ + K+GFG+   + +++V +Y KCG V
Sbjct: 138 NDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDV 197

Query: 214 EDARRVFDEV-----LC--------------------------RDLVLWNVMVSCYALNC 242
           + A  VF ++      C                          RD V WN ++S ++ + 
Sbjct: 198 DLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHG 257

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G   +A+F  M  +G   ++ T+ S++++C +    K G  +H  +++    LD++   
Sbjct: 258 FGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGN 317

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            L+DMYAK G +D A RVF  +   + +SWN+++ G    G G +A+ L   M + S   
Sbjct: 318 GLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVL 377

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC---------- 412
           DE  L +IL  C     +     +H Y IK+G+ +   + NA+I  Y+KC          
Sbjct: 378 DEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVF 437

Query: 413 ---------------------GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
                                G I  A   F  + E ++VTW S++  Y  +G S+E ++
Sbjct: 438 RLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLK 497

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           ++  M S+ V+PD I F   + AC+   +V  G++
Sbjct: 498 LYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQ 532



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 68/373 (18%)

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE----------------- 222
           + R+LH+ ++  G   + F+ + L+ +Y  CG   DA +VF E                 
Sbjct: 26  IARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALV 85

Query: 223 ----------------VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE----GMKGD 262
                           V  +D V W  M+S Y+ N     +   F+LM  +    G   D
Sbjct: 86  SSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYD 145

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID------- 315
            F+F+S++ +CG+LG S+L  Q+H LV K  F ++  +  S+V MY K G++D       
Sbjct: 146 PFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFF 205

Query: 316 ------------------------DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                                    A ++F+ M  ++ VSWNT++  F Q+G G + + +
Sbjct: 206 DIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAM 265

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
             +M    F P+ +T  S+LS+C S S       +HA  ++      L   N LI+ Y+K
Sbjct: 266 FVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAK 325

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CG +  A + F S++E D ++W S+I      GL ++++ +F +M   +V  D      +
Sbjct: 326 CGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTI 385

Query: 472 LSACSHGGLVSEG 484
           L  CS     S G
Sbjct: 386 LGVCSGPDYASTG 398



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 68/270 (25%)

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN- 333
           T  S  + R++H  +I    D  + +  +L+ MY+  G   DA +VF     +N+ +WN 
Sbjct: 20  THKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNT 79

Query: 334 --------------------------------TMVVGFGQNGDGREAVK----LLRDMLQ 357
                                           TM+ G+ QNG    + +    ++RD   
Sbjct: 80  MIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTND 139

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI-- 415
           G    D  +  S++ +CGSL  S    Q+HA   K G      I+N+++  Y KCG +  
Sbjct: 140 GGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDL 199

Query: 416 -----------------------------AGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
                                          ALQ F  + E D V+W ++I  ++ HG  
Sbjct: 200 AETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFG 259

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            + + +F +M +    P+ + +  VLSAC+
Sbjct: 260 VQCLAMFVEMCNQGFSPNFMTYGSVLSACA 289


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 317/571 (55%), Gaps = 3/571 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L   A    L+ G ++H  I++ G    + +   ++++Y KC +       F  + 
Sbjct: 108 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 167

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W  +I+  +           +RRM LD V  + IT  ++  A    + +  G+ 
Sbjct: 168 HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKF 227

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           ++  +       +  V ++ V+++G  G + DARR+F++++ RD+V WN++++ Y  N  
Sbjct: 228 VYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNEN 287

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  ++ +G+K +  TF  ++N   +L S   G+ IH LV +  +D D +VAT+
Sbjct: 288 FGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATA 347

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ +Y +      A ++F  M +K+V++W  M V + QNG  +EA++L ++M      P 
Sbjct: 348 LMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPT 407

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL ++L +C  L+   + RQ+H++ I+N  +  + +E ALIN Y KCG +A A+  F 
Sbjct: 408 SATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFE 467

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + D++ W S++GAYA HG   E++++F +M    V+ D+++F+ VLSA SH G V++
Sbjct: 468 KMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTD 527

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-IEPRSDTLGAFIGA 542
           G +YF  M+ D+ I P  E Y C+ DLLGR G + EA D++  +    P        +GA
Sbjct: 528 GYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGA 587

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+ H     AK AAE++LE +PS    Y ++SNVYA+   W  V R+RK+MR     K P
Sbjct: 588 CRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEP 647

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G S IEI   +H F+  DRSHP+   +YA L
Sbjct: 648 GRSSIEILNRVHEFLEGDRSHPRRHPIYAEL 678



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 241/489 (49%), Gaps = 10/489 (2%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +F+   L+  +    +  G+++H H+   G      +   ++ +Y +C +  + +++F+ 
Sbjct: 5   AFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEI 64

Query: 124 MRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +  +++  W  +I GI    G+       F +M  ++V    +T+ ++L AC   + ++ 
Sbjct: 65  LERKDVFAWTRMI-GIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKD 123

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G  +H  IL+ GF  + FV +AL+++Y KCG V  A   F  +  RD+V W  M++    
Sbjct: 124 GMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQ 183

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +     A  ++  M+L+G+  +  T  ++ N+ G       G+ ++GLV     + DV V
Sbjct: 184 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRV 243

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             S V+M+   G + DA R+F+ M  ++VV+WN ++  + QN +  EAV+L   + Q   
Sbjct: 244 MNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGV 303

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             +++T   +L+   SL+   + + +H    + G      +  AL++ Y +C +   A +
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWK 363

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D++TWT +  AYA +G  KE++++F++M     RP S   + VL  C+H   
Sbjct: 364 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAA 423

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GA 538
           + +G R  +  I +     +    T L ++ G+ G + EA  +   M    + D L   +
Sbjct: 424 LQKG-RQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKM---AKRDILVWNS 479

Query: 539 FIGACKVHG 547
            +GA   HG
Sbjct: 480 MLGAYAQHG 488



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 206/416 (49%), Gaps = 7/416 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   F +LL+ C  A +++ GRR+H  +   GF  N  V   L+ +Y +CG V +A++VF
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  +D+  W  M+  Y      D A+ +F  M+ E +     T+ +++N+C +  S K
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G +IHG +++Q F+ DV V T+L++MY K G++  A   F  +  ++VVSW  M+    
Sbjct: 123 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 182

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+     A  L R M      P+++TL ++ ++ G  +   E + V+       +++ + 
Sbjct: 183 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVR 242

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N+ +N +   G +  A + F  + + D+VTW  +I  Y  +    E++ +F ++    
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG 302

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           V+ + I F+ +L+  +    +++G +  + ++ +     D+   T L  L GR     +A
Sbjct: 303 VKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQA 361

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE--KLLELEPSKPVNYALVS 574
           + +   M     S  +  +   C  +   G  K A +  + ++LE  +P +  LV+
Sbjct: 362 WKIFVDMG----SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVA 413



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 1/268 (0%)

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K D   F +L+  C +  +   GR++H  V  + F+ + LV   L+ MYA+ G++ +A +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +  K+V +W  M+  + Q GD   A+ +   M +    P +VT  +IL++C S   
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             +  ++H   ++ G +  + +  ALIN Y+KCGS+ GA   F  ++  D+V+WT++I A
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
              H     +  ++ +M    V P+ I    V +A      +SEG ++   ++S   +  
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMES 239

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           D        ++ G  GLL +A  L   M
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDM 267


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 315/581 (54%), Gaps = 6/581 (1%)

Query: 59  THSAHSFYSQALKV----SAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           T      +S+AL++    S    F  Q K +H+ +++L L     L N +L   +   + 
Sbjct: 5   TSPTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGST 64

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +  + +F +++  NI  WNT+I G++  +C  +    +  M       ++ T   +L+AC
Sbjct: 65  NYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            +  D+ +G ++HS ++K G+  + FV ++L+ LY KC   +DA +VFD++  +++V W 
Sbjct: 125 ARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWT 184

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++ Y  +     AI  F  +   G+K D F+   ++ +C  LG    G  I   +   
Sbjct: 185 AIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS 244

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
               +V VATSL+DMY K GN++ A  +F  M  K++VSW+TM+ G+  NG  ++A+ L 
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M   +  PD  T+  +LS+C +L          +   +N   +   +  ALI+ YSKC
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKC 364

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GS+  A + F ++K  D V W +++   + +G +K    +F  +  H +RPD   F+ +L
Sbjct: 365 GSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLL 424

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
             C+HGG V+EG ++FN M   + + P  EHY C+ DLLGR GLL EA+ L+ +MP++P 
Sbjct: 425 CGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPN 484

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           +   GA +G CK+H    LA+   +KL+ELEP    NY  +SN+Y+    W +  ++R  
Sbjct: 485 AVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRST 544

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           M++    K+  CSWIEI G +H F+  D+SH  +  +YA L
Sbjct: 545 MKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKL 585


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 306/545 (56%), Gaps = 4/545 (0%)

Query: 84  QLHSHIMKLGLC-NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI--I 140
           Q+H+ I+  GL  N  +   Q++  Y +         +F++M  R+I  WN++I      
Sbjct: 3   QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           N    V   + RM+ + ++ D  TF   L+AC    D+++G  + +  +  G+G + FV 
Sbjct: 63  NYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVV 122

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           S++++LY K G ++ A+ VFD+++ RD+V W  M++ +A +     AI ++  M+ E  +
Sbjct: 123 SSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTE 182

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
           GD      L+ +C +LG SK G  +HG ++++  ++D ++ TSL+DMYAKNG ++ A RV
Sbjct: 183 GDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRV 242

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+G+  K+V+SW  ++ GF QNG   + +  L +M    F PD V+L S LS+C  +   
Sbjct: 243 FEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNL 302

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              + +H + +K      +S   ALI+ Y+KCG++  A   F  ++  DL+ W ++I +Y
Sbjct: 303 KVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSY 361

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
             HG   E++ +F KM    + PD   F  +LSACSH GLV EG  +F+++I    I P 
Sbjct: 362 GIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPS 421

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            +HY C+ DLL R G + EAY L+ SM I+P      A +  C  H ++ + +  A+K+L
Sbjct: 422 EKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKIL 481

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           E  P     Y LVSN ++  + W D A  RK+M++    KVPG S +E+ G++  F+  D
Sbjct: 482 ESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMED 541

Query: 621 RSHPQ 625
           ++H Q
Sbjct: 542 KNHNQ 546



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 198/387 (51%), Gaps = 5/387 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E      S ++  LK  +    L  G+ + +  +  G    + + + VL++Y K    
Sbjct: 76  ISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKM 135

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D  + +FD+M  R++V+W T+I+G    G   +    +R M  +    D +    L++AC
Sbjct: 136 DKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQAC 195

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
               D + G  +H  +++    ++  + ++L+D+Y K G +E A RVF+ +  + ++ W 
Sbjct: 196 TSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWG 255

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            ++S +A N   +  +A    M+  G K D  +  S +++C  +G+ K+G+ +HG ++K+
Sbjct: 256 ALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKR 315

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            + LD +  T+L+DMYAK G +  A  +FD +  ++++ WN M+  +G +GDG EA+ L 
Sbjct: 316 LY-LDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLF 374

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSK 411
             M + +  PD  T AS+LS+C    +  E +   H    K+ +Q        +++  S+
Sbjct: 375 LKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSR 434

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSII 437
            G +  A Q   S+  +P L  W +++
Sbjct: 435 AGQVEEAYQLIESMHIKPGLAIWVALL 461


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/586 (32%), Positives = 311/586 (53%), Gaps = 41/586 (6%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G + +   LH+ ++K GL   +   N +L  Y+  +A  D  KL   M   ++V++NT++
Sbjct: 29  GHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTIL 88

Query: 137 SGIINCG---------------------------------GNVTPYFRRMLLDNVRLDHI 163
           SG    G                                 G    +F +M   +VR D+ 
Sbjct: 89  SGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNF 148

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  ++  C    D+  G+++H+ I+KV   L+ F+ + L+ +Y + G + DAR+VFD +
Sbjct: 149 TYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGM 204

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R LV WN M+SCY+    GD +I +F  +  EG+  D +T++ ++N            
Sbjct: 205 PSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAM 264

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+H L+I++ F  D     +LV++Y+K G +  A R+F+ +  ++VVSW  ++VGF Q+G
Sbjct: 265 QVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSG 324

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV-QAFLSIE 402
              EA+ L   M  G   P+  T   +L +C   +   + R  H   +K G+  A + + 
Sbjct: 325 HMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVG 384

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML---SH 459
           +A+++ YSKCG +  AL+ F  + E D+ +W  II  YA +G   ++++++ +M+     
Sbjct: 385 SAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPS 444

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P+ + F+ VL ACSH GL+ EG  YF  M+  + I P +EHYTC+ DLLGR GLL E
Sbjct: 445 GIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQE 504

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A  L+ ++PI+P +   GA +GACK+HG + + +  AE L   EP    NY L++N Y  
Sbjct: 505 AEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTD 564

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              W +   +R++M      K  GCSW+EI   +H+F++ D  HPQ
Sbjct: 565 IGEWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLHPQ 610


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/591 (32%), Positives = 322/591 (54%), Gaps = 42/591 (7%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTLISGI 139
           + +H+ ++K GL N     +++L   V    FD       +FD ++  N++ WNT+  G 
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 140 INCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                 V+     +++ ++ L  D  TF  LL++C ++   + G+++H  +LK+GF L+ 
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 198 FVSSALVDLYGKCGFVEDARRVFD-------------------------------EVLCR 226
           +V ++L+ +Y + G +EDAR+VFD                               E+  +
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           D+V WN M+S Y        A+ +F  +M +  ++ D  T  ++V++C    S +LGR +
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHV 244

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  +    F  ++ +  +L+D+Y+K G ++ AC +FDG+  K+V+SWNT++ G+      
Sbjct: 245 HSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLY 304

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY---AIKNGVQAFLSIE 402
           +EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y    +K  V    S++
Sbjct: 305 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQ 364

Query: 403 NALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            +LI+ Y+KCG I  A Q F  S+    L TW ++I  +A HG +  + ++F +M  + +
Sbjct: 365 TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGI 424

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD I F+ +LSACSH G++  G   F  M   Y I P  EHY C+ DLLG  GL  EA 
Sbjct: 425 EPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAE 484

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           +++ +MP+EP      + + ACK+HG++ L +  A+KL+++EP    +Y L+SN+YA+  
Sbjct: 485 EMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAG 544

Query: 582 CWFDVARLRKMMRDN-CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
            W +VA++R ++ D     KVPGCS IEI   +H F+  D+ HPQ   +Y 
Sbjct: 545 RWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYG 595



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 212/429 (49%), Gaps = 43/429 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK    ++G+Q+H H++KLG    + +   ++ +Y +        K FD       
Sbjct: 96  LKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDV 155

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRR-MLL 155
                              +KLFDE+  +++V+WN +ISG +  G        F+  M++
Sbjct: 156 VSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMM 215

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
            NVR D  T  +++ AC Q+D IE+GR +HS+I   GF  N  + +AL+DLY K G VE 
Sbjct: 216 TNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVET 275

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A  +FD +  +D++ WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  
Sbjct: 276 ACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 335

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVA---TSLVDMYAKNGNIDDACRVFD-GMTAKNVVS 331
           LG+  +GR IH  + K+   +   V+   TSL+DMYAK G+ID A +VFD  M+ +++ +
Sbjct: 336 LGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLST 395

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN M+ GF  +G    A  +   M      PD++T   +LS+C    +    R +   ++
Sbjct: 396 WNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFR-SM 454

Query: 392 KNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKE 448
             G +    +E+   +I+     G    A +   ++  EPD V W S++ A   HG + E
Sbjct: 455 TRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG-NLE 513

Query: 449 SIEVFEKML 457
             E F K L
Sbjct: 514 LGESFAKKL 522


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 320/600 (53%), Gaps = 7/600 (1%)

Query: 70   LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            L V A    L+ GKQ+H  +++ GL   +S+ N ++++YVK  +      +F +M   ++
Sbjct: 913  LSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDL 972

Query: 130  VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRRLHS 186
            V+WNT+ISG    G        F  +L   +  D  T  S+LRAC        +  ++H+
Sbjct: 973  VSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHA 1032

Query: 187  FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
              +K G  L+ FVS+ L+D+Y K G +E+A  +F      DL  WN M+  Y ++     
Sbjct: 1033 CAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPK 1092

Query: 247  AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            A+ ++ LM+  G + +  T ++   + G L   K G+QI  +V+K+ F+LD+ V + ++D
Sbjct: 1093 ALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLD 1152

Query: 307  MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            MY K G ++ A R+F+ + + + V+W TM+ G  +NG    A+     M      PDE T
Sbjct: 1153 MYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYT 1212

Query: 367  LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             A+++ +C  L+   + RQ+HA  +K        +  +L++ Y+KCG+I  A   F    
Sbjct: 1213 FATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTN 1272

Query: 427  EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
               + +W ++I   A HG ++E+++ FE+M S  V PD + F+ VLSACSH GLVSE   
Sbjct: 1273 TSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYE 1332

Query: 487  YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
             F  M   Y I P+ EHY+CL D L R G + EA  +++SMP E  +      + AC+V 
Sbjct: 1333 NFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQ 1392

Query: 547  GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
                  K  AEKLL LEPS    Y L+SNVYA+   W +VA  R MMR     K PG SW
Sbjct: 1393 VDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSW 1452

Query: 607  IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNV----LDKEMDECTLW 662
            +++  ++H FV+ DRSH +   +Y  +  +   + E       +     +++E  EC+L+
Sbjct: 1453 VDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLY 1512



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 184/352 (52%), Gaps = 3/352 (0%)

Query: 128  NIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            +++ WN  +S  +  G        F  M+   V  D +TF  +L      + +E+G+++H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 186  SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +++ G      V + L+++Y K G V  AR VF ++   DLV WN M+S  AL+ L +
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 246  GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSL 304
             ++ +F  +   G+  D FT +S++ +C +LG    L  QIH   +K    LD  V+T+L
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 305  VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
            +D+Y+K+G +++A  +F      ++ SWN M+ G+  +GD  +A++L   M +     ++
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQ 1109

Query: 365  VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            +TLA+   + G L    + +Q+ A  +K G    L + + +++ Y KCG +  A + F  
Sbjct: 1110 ITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNE 1169

Query: 425  VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            +  PD V WT++I     +G  + ++  +  M    V+PD   F  ++ ACS
Sbjct: 1170 IPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 199/444 (44%), Gaps = 25/444 (5%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLI 136
            L  GK+ H+ I+  G      L N ++ +Y KC +     KLFD      R++VTWN ++
Sbjct: 642  LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 137  SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            S   +   +    FR +    V     T   + + C+ +        LH + +K+G   +
Sbjct: 702  SAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWD 761

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             FV+ ALV++Y K G + +AR +FD +  RD+VLWNVM+  Y    L   A+ +F+    
Sbjct: 762  VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNR 821

Query: 257  EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             G++ D  T  +L          K  + +    +KQ     +    + + MY  +     
Sbjct: 822  TGLRPDDVTLCTLARVV------KSKQNVLEWQLKQ-----LKAYGTKLFMYDDD----- 865

Query: 317  ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
                       +V++WN  +  F Q G+  EAV    DM+      D +T   +LS    
Sbjct: 866  -------DDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAG 918

Query: 377  LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            L+     +Q+H   +++G+   +S+ N LIN Y K GS++ A   F  + E DLV+W ++
Sbjct: 919  LNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTM 978

Query: 437  IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
            I   A  GL + S+ +F  +L   + PD      VL ACS  G         +       
Sbjct: 979  ISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAG 1038

Query: 497  ILPDSEHYTCLTDLLGRVGLLVEA 520
            ++ DS   T L D+  + G + EA
Sbjct: 1039 VVLDSFVSTTLIDVYSKSGKMEEA 1062



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 183/403 (45%), Gaps = 28/403 (6%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
             + LH + +K+GL   + +   ++++Y K     +   LFD M +R++V WN ++   ++
Sbjct: 746  AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 142  CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
             G        F       +R D +T  +L R       ++  + +  + LK         
Sbjct: 806  TGLEYEALLLFSEFNRTGLRPDDVTLCTLARV------VKSKQNVLEWQLK--------- 850

Query: 200  SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
                +  YG   F+       D+    D++ WN  +S +        A+  F  M    +
Sbjct: 851  ---QLKAYGTKLFM-----YDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRV 902

Query: 260  KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
              D  TF  +++    L   +LG+QIHG+V++   D  V V   L++MY K G++  A  
Sbjct: 903  ACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRART 962

Query: 320  VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
            VF  M   ++VSWNTM+ G   +G    +V +  D+L+G   PD+ T+AS+L +C SL  
Sbjct: 963  VFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGG 1022

Query: 380  SCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
             C    Q+HA A+K GV     +   LI+ YSK G +  A   F +    DL +W +++ 
Sbjct: 1023 GCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMH 1082

Query: 439  AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
             Y   G   +++ ++  M     R + I       A   GGLV
Sbjct: 1083 GYIVSGDFPKALRLYILMQESGERANQITLANAAKAA--GGLV 1123



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 42/334 (12%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--L 224
           S+LR  + A D+ +G+R H+ IL  G   + F+++ L+ +Y KCG +  AR++FD     
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            RDLV WN ++S +A +   DG   +F L+R   +     T + +   C    S      
Sbjct: 691 SRDLVTWNAILSAHA-DKARDG-FHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +HG  +K     DV VA +LV++YAK G I +A  +FDGM  ++VV WN M+  +   G 
Sbjct: 749 LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS--ISCETRQVHAYAIKNGVQAFLSIE 402
             EA+ L  +  +    PD+VTL ++     S    +  + +Q+ AY  K          
Sbjct: 809 EYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTK---------- 858

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
              +      GS              D++ W   +  +   G + E+++ F  M++  V 
Sbjct: 859 -LFMYDDDDDGS--------------DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVA 903

Query: 463 PDSIAFLEVLSACS-----------HGGLVSEGL 485
            D + F+ +LS  +           HG +V  GL
Sbjct: 904 CDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGL 937



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 3/261 (1%)

Query: 67   SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
            + A K +     L+QGKQ+ + ++K G    L + + VL +Y+KC   +   ++F+E+  
Sbjct: 1113 ANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPS 1172

Query: 127  RNIVTWNTLISGIINCGGNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
             + V W T+ISG +  G      F    M L  V+ D  TF +L++AC     +E GR++
Sbjct: 1173 PDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1232

Query: 185  HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
            H+  +K+    + FV ++LVD+Y KCG +EDAR +F       +  WN M+   A +   
Sbjct: 1233 HANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNA 1292

Query: 245  DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+  F  M+  G+  D  TF  ++++C   G  S+     + +      + ++   + 
Sbjct: 1293 EEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSC 1352

Query: 304  LVDMYAKNGNIDDACRVFDGM 324
            LVD  ++ G I +A +V   M
Sbjct: 1353 LVDALSRAGRIREAEKVISSM 1373


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 288/500 (57%), Gaps = 8/500 (1%)

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--IEVGRRLHSFILKVGFGLNCFV 199
           C      +FRRM     R D +TF+ +L A  Q     I+ GR +H +    G   N  V
Sbjct: 9   CHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVV 68

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM--RLE 257
            +A++ +YGKCG ++DAR  F+E+  ++ V WN M++ Y L+     A+ +F  M  R  
Sbjct: 69  GTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSR 128

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLVATSLVDMYAKNGNID 315
             + D F+FS  + +C  L   + GR+IH ++ ++  +L  DV+V T+L++MY+K G+++
Sbjct: 129 SARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLE 188

Query: 316 DACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLASILSS 373
           +A +VFD +    + V WN M+  + Q+G G++A+ L R M   +   P + T  +++  
Sbjct: 189 EARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDV 248

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C  LS   + R +HA        A L + NAL++ Y KCG +  AL  F S+K  D ++W
Sbjct: 249 CAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISW 308

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +II +YA+HG S +++ ++++M    V+P  + F+ +LSACSHGGLV++GL YF  M  
Sbjct: 309 NTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQD 368

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           D+ I P   H+ C+ DLLGR G L EA  +L SMPI+  +    + +GACK HG +    
Sbjct: 369 DHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGV 428

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            AA+++++  P     Y L+SN+YA+   W DV ++RK+M      K PG SWIEI   +
Sbjct: 429 RAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVV 488

Query: 614 HTFVSSDRSHPQAVHMYAML 633
           H FVS DRSHPQ   +Y  L
Sbjct: 489 HEFVSGDRSHPQGEEIYVEL 508



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 199/393 (50%), Gaps = 18/393 (4%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           + QG+++H +    GL   + +   V+ +Y KC   DD    F+E++ +N VTWN +++ 
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 139 IINCGGN--VTPYFRRM--LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
               G +      FR M     + R D  +F+  + AC   +D+E GR +H  + + G  
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKE 166

Query: 195 L--NCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNCLGDGAIAVF 251
           L  +  V +AL+++Y KCG +E+AR+VFD +    D V WN M++ YA +  G  A+ ++
Sbjct: 167 LHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 252 NLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
             M     +     TF ++++ C  L + K GR IH  V   +FD ++LV+ +LV MY K
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGK 286

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G +D+A  VF  M  K+ +SWNT++  +  +G   +A+ L ++M      P EVT   +
Sbjct: 287 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 346

Query: 371 LSSCGSLSISCET-----RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           LS+C    +  +      R    + IK  V  F      +I+   + G +A A     S+
Sbjct: 347 LSACSHGGLVADGLDYFYRMQDDHRIKPSVPHF----GCIIDLLGRGGRLAEAELVLKSM 402

Query: 426 K-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
             + + V W S++GA   HG  K  +   ++++
Sbjct: 403 PIQANAVQWMSLLGACKTHGDLKRGVRAADQVV 435



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 5/217 (2%)

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC--ETRQVHAYAIKN 393
           +  F  NG   EA+   R M Q    PD VT + IL++   +  +   + R++H YA  +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G+   + +  A+I+ Y KCG +  A   F  ++  + VTW +++  Y   G  +E++E+F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 454 EKM--LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL-PDSEHYTCLTDL 510
            +M   S + RPD  +F   + ACS+   + +G     ++  +   L  D    T L ++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             + G L EA  +  S+  +  S    A I A   HG
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHG 217



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 14/243 (5%)

Query: 54  TIHESTHSA--HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
           ++H++T  A     +   + V A+   L+QG+ +H+ +        L + N ++H+Y KC
Sbjct: 228 SMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKC 287

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLL 169
              D+   +F  M++++ ++WNT+IS     G        ++ M L  V+   +TF  LL
Sbjct: 288 GCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLL 347

Query: 170 RACVQ----ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            AC      AD ++   R+     ++   +  F    ++DL G+ G + +A  V   +  
Sbjct: 348 SACSHGGLVADGLDYFYRMQD-DHRIKPSVPHF--GCIIDLLGRGGRLAEAELVLKSMPI 404

Query: 226 R-DLVLW-NVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           + + V W +++ +C     L  G  A   ++ R+    G Y   S++  + G     +  
Sbjct: 405 QANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKI 464

Query: 283 RQI 285
           R+I
Sbjct: 465 RKI 467


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/605 (32%), Positives = 318/605 (52%), Gaps = 38/605 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQLH HI+  GL     L ++++  Y   +   +   L +   +    +WN LI+ 
Sbjct: 95  LPPGKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITS 154

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +           +++M+   VR D+ TF S+L+AC +  +++ G  +H  I       +
Sbjct: 155 YVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWS 214

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY------------------ 238
            FV +AL+ +YG+CG V+ AR +FD +L RD V WN M+SCY                  
Sbjct: 215 LFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQS 274

Query: 239 -------------ALNCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
                        A  CL  G    A+ + + MR  G+  D       + +C  +G+ +L
Sbjct: 275 KCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRL 334

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G++IHG  I+    +   V  +LV MYA+  +I  A  +F     K+ ++WN+M+ G   
Sbjct: 335 GKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTH 394

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLS 400
            G   EA+ L R++L     PD VT ASIL  C  ++     R+ H Y  K+   +  L 
Sbjct: 395 LGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLL 454

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NAL++ Y++ G ++ A + F S+ + D VT+TS+I  Y   G   +++ +FE+M    
Sbjct: 455 LWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQ 514

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD I  + VLSACSH GLV++    F  M S + + P  EHY C+ DL GRVGLL +A
Sbjct: 515 IKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKA 574

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++  MP  P S      IGAC +HG++ + +WAAEKLLE+ P     Y L++N+YA+ 
Sbjct: 575 KEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAA 634

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W  +A +R +MRD+   K+PGCSW+++  E  +F   D S PQA+    +L +++ +M
Sbjct: 635 GSWSKLAEIRTLMRDSGVAKIPGCSWVDVGSEFISFSVGDTSSPQALESKLLLDSLYDVM 694

Query: 641 EENNV 645
           +  ++
Sbjct: 695 KHGSL 699



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 197/447 (44%), Gaps = 44/447 (9%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL +C ++  +  G++LH  I+  G   + F+ S LV  Y    F+ +A  + +      
Sbjct: 85  LLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFR 144

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
              WN++++ Y  + L + AI  +  M  +G++ D FTF S++ +CG   + K G ++H 
Sbjct: 145 PCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHK 204

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            +   S    + V  +L+ MY + G +D A  +FD M  ++ VSWN+M+  +   G  RE
Sbjct: 205 SINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWRE 264

Query: 348 AVKLLRDMLQ--------------------GSFCP---------------DEVTLASILS 372
           A +L   M                      G+F                 D+V +   L 
Sbjct: 265 AFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLG 324

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C  +      +++H + I++      +++NAL+  Y++C  I  A   F    +   +T
Sbjct: 325 ACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRIT 384

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W S++      G  +E++ +F ++L   V PD + F  +L  C+    +  G R F+  I
Sbjct: 385 WNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHG-REFHCYI 443

Query: 493 SDYHILPDSEH---YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
           + +    D  H   +  L D+  R G + EA  +  S+  +    T  + I    + G  
Sbjct: 444 TKHRDFRD--HLLLWNALVDMYARAGKVSEAKRIFYSLS-KKDEVTYTSLIAGYGMQGEG 500

Query: 550 GLAKWAAEKL--LELEPSKPVNYALVS 574
           G A    E++   +++P      A++S
Sbjct: 501 GKAVRLFEEMKRFQIKPDHITMIAVLS 527



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 201/443 (45%), Gaps = 50/443 (11%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK   +   L+ G ++H  I        L + N ++ +Y +C   D    LFD M 
Sbjct: 183 FPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNML 242

Query: 126 VRNIVTWNTLIS------------------------------GIINCG----GNVTPYFR 151
            R+ V+WN++IS                               II  G    GN T   +
Sbjct: 243 ERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALK 302

Query: 152 RMLLDNVR-----LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
             LL  +R     LD +     L AC     I +G+ +H F ++    +   V +ALV +
Sbjct: 303 --LLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTM 360

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG--DGAIAVFNLMRLEGMKGDYF 264
           Y +C  +  A  +F     +  + WN M+S   L  LG  + A+ +F  + L G++ DY 
Sbjct: 361 YARCKDIRHAYMLFRLNDDKSRITWNSMLS--GLTHLGRVEEALCLFRELLLFGVEPDYV 418

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           TF+S++  C  +   + GR+ H  + K + F   +L+  +LVDMYA+ G + +A R+F  
Sbjct: 419 TFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYS 478

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           ++ K+ V++ +++ G+G  G+G +AV+L  +M +    PD +T+ ++LS+C    +  + 
Sbjct: 479 LSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQA 538

Query: 384 RQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYA 441
             + A     +G+   L     + + + + G +  A +    +   P    W ++IGA  
Sbjct: 539 ELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACC 598

Query: 442 FHGLSKESIEVFEKMLSHAVRPD 464
            HG         EK+L   +RP+
Sbjct: 599 IHGNMDIGEWAAEKLLE--MRPE 619



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 5/250 (2%)

Query: 247 AIAVFNLMRLEGMKGDYF-----TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
           +   F+L++L     D F     + S L+ SC    S   G+Q+HG +I      D  + 
Sbjct: 58  SFEAFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLV 117

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           + LV  Y+    + +A  + +        SWN ++  + ++     A+   + M+     
Sbjct: 118 SKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVR 177

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD  T  SIL +CG         +VH           L + NALI+ Y +CG +  A   
Sbjct: 178 PDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNL 237

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F ++ E D V+W S+I  Y+  G+ +E+ E+FE M S  +  + + +  +   C   G  
Sbjct: 238 FDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNF 297

Query: 482 SEGLRYFNLM 491
           ++ L+  + M
Sbjct: 298 TQALKLLSQM 307


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/593 (32%), Positives = 324/593 (54%), Gaps = 14/593 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G+ LH  ++K GL + + + N +L +Y +    +D E +F +MR R++++WN++++ 
Sbjct: 277 LRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMAS 336

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G           ML      +++TF + L AC   + +++   +H+F++ +G   N
Sbjct: 337 HVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAFVILLGLHHN 393

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + +ALV +YGK G +  A+RV   +  RD V WN ++  +A N   + AI  FNL+R 
Sbjct: 394 LIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLRE 453

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKL---GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           EG+  +Y T  +L+++   L    L   G  IH  ++   F+L+  V +SL+ MYA+ G+
Sbjct: 454 EGVPVNYITIVNLLSA--FLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGD 511

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++ +  +FD +  KN  +WN ++      G G EA+KL+  M       D+ + +   + 
Sbjct: 512 LNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAI 571

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            G+L++  E +Q+H+  IK+G ++   + NA ++ Y KCG I    +     +     +W
Sbjct: 572 IGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSW 631

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             +I A A HG  +++ E F +ML   +RPD + F+ +LSACSHGGLV EGL YF+ M +
Sbjct: 632 NILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMST 691

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            + +    EH  C+ DLLGR G L EA + +  MP+ P      + + ACK+HG++ LA+
Sbjct: 692 KFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELAR 751

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            AA++L EL+ S    Y L SNV AS R W DV  +RK M  +   K P CSW+++  ++
Sbjct: 752 KAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQV 811

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            TF   D+ HPQ   +YA L  +  ++ E     + S      D+E  E  LW
Sbjct: 812 TTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLW 864



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 222/416 (53%), Gaps = 8/416 (1%)

Query: 64  SFYSQALKVSA--KFGFLQQGK-QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S Y  A  V+A  + G + +G  Q+H+H++K GL   + +   +LH Y       +++ +
Sbjct: 57  SSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMV 116

Query: 121 FDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           F E+   NIV+W +L+ G     C   V   +RR+  D V  +     +++R+C    D 
Sbjct: 117 FKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDK 176

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G ++   ++K G      V+++L+ ++G C  +E+A  VFD++  RD + WN +++  
Sbjct: 177 MLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITAS 236

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   + ++  F+ MR    K DY T S+L+  CG+  + + GR +HG+V+K   + +V
Sbjct: 237 VHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNV 296

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V  SL+ MY++ G  +DA  VF  M  ++++SWN+M+     NG+   A++LL +MLQ 
Sbjct: 297 CVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQT 356

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               + VT  + LS+C +L      + VHA+ I  G+   L I NAL+  Y K GS+A A
Sbjct: 357 RKATNYVTFTTALSACYNLET---LKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAA 413

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
            +    + + D VTW ++IG +A +     +IE F  +    V  + I  + +LSA
Sbjct: 414 QRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSA 469



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 251/526 (47%), Gaps = 39/526 (7%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHIT 164
           +Y K  + +  + +FD+M  RN  +WN L+SG +  G       +F  ML   VR     
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 165 FNSLLRACVQADDIEVGR-RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
             SL+ AC ++  +  G  ++H+ ++K G   + FV ++L+  YG  G+V +   VF E+
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              ++V W  ++  YA N      ++V+  +R +G+  +    ++++ SCG L    LG 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+ G VIK   D  V VA SL+ M+    +I++A  VFD M  ++ +SWN+++     NG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              ++++    M       D +T++++L  CGS       R +H   +K+G+++ + + N
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +L++ YS+ G    A   F  ++E DL++W S++ ++  +G    ++E+  +ML      
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKAT 360

Query: 464 DSIAFLEVLSACS--------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           + + F   LSAC         H  ++  GL + NL+I +            L  + G+ G
Sbjct: 361 NYVTFTTALSACYNLETLKIVHAFVILLGLHH-NLIIGN-----------ALVTMYGKFG 408

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL-LELEPSKPVNYALVS 574
            +  A  +   MP +    T  A IG    H        A E   L  E   PVNY  + 
Sbjct: 409 SMAAAQRVCKIMP-DRDEVTWNALIGG---HADNKEPNAAIEAFNLLREEGVPVNYITIV 464

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG-EIHTFVSS 619
           N+ ++     D+           DH +P  + I +AG E+ TFV S
Sbjct: 465 NLLSAFLSPDDL----------LDHGMPIHAHIVVAGFELETFVQS 500



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 249/488 (51%), Gaps = 16/488 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G Q+   ++K GL   +S+ N ++ ++  C + ++   +FD+M+ R+ ++WN++I+  ++
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVH 238

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G       YF +M   + + D+IT ++LL  C  A ++  GR LH  ++K G   N  V
Sbjct: 239 NGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCV 298

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+ +Y + G  EDA  VF ++  RDL+ WN M++ +  N     A+ +   M     
Sbjct: 299 CNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRK 358

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             +Y TF++ +++C  L + K+   +H  VI      ++++  +LV MY K G++  A R
Sbjct: 359 ATNYVTFTTALSACYNLETLKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQR 415

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL-S 378
           V   M  ++ V+WN ++ G   N +   A++    + +     + +T+ ++LS+  S   
Sbjct: 416 VCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDD 475

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +      +HA+ +  G +    ++++LI  Y++CG +  +   F  +   +  TW +I+ 
Sbjct: 476 LLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILS 535

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A A +G  +E++++  KM +  +  D  +F    +   +  L+ EG +  +L+I   H  
Sbjct: 536 ANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIK--HGF 593

Query: 499 PDSEHYTCLT-DLLGRVGLLVEAYDLLASMPIEPRSDTLGAF---IGACKVHGSIGLAKW 554
             +++    T D+ G+ G + + + +L     +PRS +  ++   I A   HG    A+ 
Sbjct: 594 ESNDYVLNATMDMYGKCGEIDDVFRILP----QPRSRSQRSWNILISALARHGFFQQARE 649

Query: 555 AAEKLLEL 562
           A  ++L+L
Sbjct: 650 AFHEMLDL 657



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 12/196 (6%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           ++RN G IH    S    +S A  +      L +G+QLHS I+K G  +   + N  + +
Sbjct: 552 KMRNDG-IHLDQFS----FSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDM 606

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y KC   DD+ ++  + R R+  +WN LIS +   G        F  ML   +R DH+TF
Sbjct: 607 YGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTF 666

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS--ALVDLYGKCGFVEDARRVFDE- 222
            SLL AC     ++ G    S  +   FG+   +     ++DL G+ G + +A    ++ 
Sbjct: 667 VSLLSACSHGGLVDEGLAYFS-SMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKM 725

Query: 223 -VLCRDLVLWNVMVSC 237
            V   DLV  +++ +C
Sbjct: 726 PVPPTDLVWRSLLAAC 741


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 280/474 (59%), Gaps = 3/474 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           + +M   N+  ++ TF  +  AC   ++I + R  H  + K+G   +    +++V +Y +
Sbjct: 105 YHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFR 164

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSS 268
           CG    AR+VFDE+  +DLV WN ++S YA       A+ VF  +R E G + D  +  S
Sbjct: 165 CGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVS 224

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++ +CG LG  +LGR + G V+++   ++  + ++L+ MY+K G +  + R+FDGM +++
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRD 284

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            ++WN  +  + QNG   EA+ L   M +    P++VTL ++LS+C S+      +Q+  
Sbjct: 285 FITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDE 344

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           YA   G+Q  + +  ALI+ Y+KCGS+  A + F  +   +  +W ++I A A HG +KE
Sbjct: 345 YATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKE 404

Query: 449 SIEVFEKMLSH--AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           ++ +FE+M     + RP+ I F+ +LSAC H GLV EG R F++M + + ++P  EHY+C
Sbjct: 405 ALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSC 464

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + DLL R G L EA+D++  MP +P + TLGA   AC+   ++ + +   + LLEL+PS 
Sbjct: 465 MVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSN 524

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
             NY + S +Y +   W D AR+R +MR+N   K PGCSWIE+  ++  F+S D
Sbjct: 525 SGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGD 578



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 216/419 (51%), Gaps = 38/419 (9%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++  +  H  + KLGL N     N ++ +Y +C       K+FDE+  +++V+WN+L+SG
Sbjct: 133 IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSG 192

Query: 139 IINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
               G        F R+  ++    D ++  S+L AC +  D+E+GR +  F+++ G  +
Sbjct: 193 YAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV 252

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N ++ SAL+ +Y KCG +  +RR+FD +  RD + WN  +S YA N + D AI++F+ M+
Sbjct: 253 NSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK 312

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G+  +  T ++++++C ++G+  LG+Q+      +    D+ VAT+L+DMYAK G+++
Sbjct: 313 ENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLE 372

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSS 373
            A RVF+ M  KN  SWN M+     +G  +EA+ L   M    GS  P+++T  S+LS+
Sbjct: 373 SAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSA 432

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C           VHA  +  G + F  +                    FG V  P +  +
Sbjct: 433 C-----------VHAGLVDEGYRLFDMMST-----------------LFGLV--PKIEHY 462

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           + ++   +  G   E+ +V EKM     +PD++    + SAC     V  G R   +++
Sbjct: 463 SCMVDLLSRAGHLYEAWDVIEKM---PEKPDNVTLGALHSACQRKKNVDIGERVIQMLL 518



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 11/303 (3%)

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +++ M+   +  + FTF  +  +C  L   ++ R  H  V K   D D     S+V MY 
Sbjct: 104 LYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYF 163

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEVTLA 368
           + G    A +VFD +T K++VSWN+++ G+ + G  REAV++   + + S F PDE++L 
Sbjct: 164 RCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLV 223

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+L +CG L      R V  + ++ G++    I +ALI+ YSKCG +  + + F  +   
Sbjct: 224 SVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSR 283

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D +TW + I AYA +G++ E+I +F  M  + V P+ +    VLSAC+  G +  G +  
Sbjct: 284 DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ-- 341

Query: 489 NLMISDYHILPDSEH----YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
              + +Y      +H     T L D+  + G L  A  +   MP      +  A I A  
Sbjct: 342 ---MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP-RKNDASWNAMISALA 397

Query: 545 VHG 547
            HG
Sbjct: 398 SHG 400



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 142/314 (45%), Gaps = 47/314 (14%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    + G L+ G+ +   +++ G+     + + ++ +Y KC       ++FD M  R+ 
Sbjct: 226 LGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDF 285

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           +TWN  IS     G        F  M  + V  + +T  ++L AC     +++G+++  +
Sbjct: 286 ITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY 345

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
               G   + FV++AL+D+Y KCG +E A+RVF+++  ++   WN M+S  A +     A
Sbjct: 346 ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEA 405

Query: 248 IAVFNLMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           +++F  M  EG   + +  TF SL+++C           +H                   
Sbjct: 406 LSLFERMSDEGGSARPNDITFVSLLSAC-----------VHA------------------ 436

Query: 306 DMYAKNGNIDDACRVFDGMTA-----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
                 G +D+  R+FD M+        +  ++ MV    + G   EA  ++  M +   
Sbjct: 437 ------GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK-- 488

Query: 361 CPDEVTLASILSSC 374
            PD VTL ++ S+C
Sbjct: 489 -PDNVTLGALHSAC 501


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/468 (36%), Positives = 278/468 (59%), Gaps = 1/468 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +++ + AC Q+ +++  R++H  +    F  + F+ ++L+ LY KCG V +A +VFD++ 
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +D+V W  +++ YA N +   AI +   M     K + FTF+SL+ + G    S +G Q
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IH L +K  +  DV V ++L+DMYA+ G +D A  VFD + +KN VSWN ++ GF + GD
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           G  A+ +  +M +  F     T +SI S    +    + + VHA+ +K+  +    + N 
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNT 293

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           +++ Y+K GS+  A + F  V   DLVTW S++ A+A +GL KE++  FE+M    +  +
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I FL +L+ACSHGGLV EG  YF+ MI +Y++ P+ EHY  + DLLGR GLL  A   +
Sbjct: 354 QITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFI 412

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP+EP +   GA + AC++H +  + ++AA+ + +L+P       L+ N+YAS   W 
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
             AR+RKMM+     K P CSW+EI   +H FV++D +HP+A  +Y M
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKM 520



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 211/404 (52%), Gaps = 15/404 (3%)

Query: 51  NSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK 110
           +SG +  +    H+F    +   A+   L   +++H H+          L N ++H+Y K
Sbjct: 43  DSGELAPTPRVYHAF----ITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCK 98

Query: 111 CKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSL 168
           C +  +  K+FD+MR +++V+W +LI+G    +           ML    + +  TF SL
Sbjct: 99  CGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASL 158

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L+A     D  +G ++H+  +K  +  + +V SAL+D+Y +CG ++ A  VFD++  ++ 
Sbjct: 159 LKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG 218

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN ++S +A    G+ A+ VF  M+  G +  +FT+SS+ +    +G+ + G+ +H  
Sbjct: 219 VSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAH 278

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           ++K    L   V  +++DMYAK+G++ DA +VF+ +  K++V+WN+M+  F Q G G+EA
Sbjct: 279 MVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEA 338

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ----VHAYAIKNGVQAFLSIENA 404
           V    +M +     +++T   IL++C    +  E +     +  Y ++  ++ ++++ + 
Sbjct: 339 VSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDL 398

Query: 405 LINAYSKCGSIAGALQ-CFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           L     + G +  AL   F    EP    W +++ A   H  +K
Sbjct: 399 L----GRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAK 438



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 60/118 (50%)

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           G   P      + +++C       + R++H +   +  +    ++N+LI+ Y KCGS+  
Sbjct: 45  GELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVE 104

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           A + F  +++ D+V+WTS+I  YA + +  E+I +   ML    +P+   F  +L A 
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA 162


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 206/623 (33%), Positives = 322/623 (51%), Gaps = 49/623 (7%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH+  +K G    L+  N +L +Y K       +KLFDE+  RN  TW  LISG    G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 145 N--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           +  V   FR M       +  T +S+L+ C   +++++G+ +H+++L+ G  ++  + ++
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY----------------------AL 240
           ++DLY KC   E A R+F+ +   D+V WN+M+  Y                      + 
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSW 490

Query: 241 NCLGDG---------AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N + DG         A+     M   G +    TFS  +    +L   +LGRQ+HG+V+K
Sbjct: 491 NTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLK 550

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDA----------------CRVFDGMTAKNVVSWNTM 335
             FD D  + +SLV+MY K G +D A                 RV        +VSW +M
Sbjct: 551 FGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSM 610

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           V G+  NG   + +K  R M++     D  T+ +I+S+C +  I    R VHAY  K G 
Sbjct: 611 VSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGH 670

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +    + ++LI+ YSK GS+  A   F    EP++V WTS+I  YA HG    +I +FE+
Sbjct: 671 RIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEE 730

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           ML+  + P+ + FL VL+ACSH GL+ EG RYF +M   Y I P  EH T + DL GR G
Sbjct: 731 MLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAG 790

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            L +  + +    I   +    +F+ +C++H ++ + KW +E LL++ PS P  Y L+SN
Sbjct: 791 HLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSN 850

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCT 635
           + AS   W + AR+R +M      K PG SWI++  +IHTFV  DRSHPQ   +Y+ L  
Sbjct: 851 MCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDI 910

Query: 636 VFGLMEENNVSGHCNVLDKEMDE 658
           + G ++E   S    ++ ++++E
Sbjct: 911 LIGRLKEIGYSFDVKLVMQDVEE 933



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 217/474 (45%), Gaps = 72/474 (15%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR------------- 125
           LQ GK +H+ +++ G+   + L N +L +Y+KCK F+  E+LF+ M              
Sbjct: 406 LQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGA 465

Query: 126 ------------------VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV--------R 159
                              +++V+WNT++ G++ CG      + R  L+ +         
Sbjct: 466 YLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCG------YERHALEQLYCMVECGTE 519

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA--- 216
              +TF+  L        +E+GR+LH  +LK GF  + F+ S+LV++Y KCG ++ A   
Sbjct: 520 FSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASII 579

Query: 217 -RRVFDEVLCR------------DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
            R V  +VL +             +V W  MVS Y  N   +  +  F LM  E +  D 
Sbjct: 580 LRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDI 639

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            T ++++++C   G  + GR +H  V K    +D  V +SL+DMY+K+G++DDA  VF  
Sbjct: 640 RTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQ 699

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSIS 380
               N+V W +M+ G+  +G G  A+ L  +ML     P+EVT   +L++C   G +   
Sbjct: 700 SNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEG 759

Query: 381 CETRQV--HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT-WTSII 437
           C   ++   AY I  GV+   S    +++ Y + G +              L + W S +
Sbjct: 760 CRYFRMMKDAYCINPGVEHCTS----MVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFL 815

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            +   H  + E  +   +ML      D  A++ + + C+      E  R  +LM
Sbjct: 816 SSCRLHK-NVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLM 868



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 140/268 (52%), Gaps = 19/268 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL----- 120
           +S AL +++    ++ G+QLH  ++K G  +   +++ ++ +Y KC   D    +     
Sbjct: 525 FSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVP 584

Query: 121 FDEMRVRN-----------IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNS 167
            D +R  N           IV+W +++SG +  G   +    FR M+ + V +D  T  +
Sbjct: 585 LDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTT 644

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           ++ AC  A  +E GR +H+++ K+G  ++ +V S+L+D+Y K G ++DA  VF +    +
Sbjct: 645 IISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPN 704

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIH 286
           +V+W  M+S YAL+  G  AI +F  M  +G+  +  TF  ++N+C   G  + G R   
Sbjct: 705 IVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFR 764

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            +      +  V   TS+VD+Y + G++
Sbjct: 765 MMKDAYCINPGVEHCTSMVDLYGRAGHL 792



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L+ G+ +H+++ K+G      + + ++ +Y K  + DD   +F +    NIV W 
Sbjct: 650 ANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWT 709

Query: 134 TLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++ISG  +   G +    F  ML   +  + +TF  +L AC  A  IE G R    ++K 
Sbjct: 710 SMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFR-MMKD 768

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARR-VFDEVLCRDLVLWNVMVS 236
            + +N  V   +++VDLYG+ G +   +  +F   +     +W   +S
Sbjct: 769 AYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLS 816


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 318/569 (55%), Gaps = 2/569 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S ALK  A    +  G+ LH   +K GL N + + + ++ +Y+K    +    +F+ M  
Sbjct: 155 SVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTT 214

Query: 127 RNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W  +I G+++ G ++    YF  M    V  D  TF   L+A  ++  +  G+ +
Sbjct: 215 RNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAI 274

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  +K GF    +V + L  +Y KC   +   R+F ++   D+V W  ++  Y      
Sbjct: 275 HAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDE 334

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+  F  MR   +  + +TF+S++++C  L  +K G QIHG  ++      + V+ S+
Sbjct: 335 ERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSI 394

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + +Y+K G + +A  VFDGMT K+++SW+T++  + Q    +EA   L  M +    P+E
Sbjct: 395 ITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNE 454

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
             LAS+LS CGS+++    +QVHAYA+  G+     + +ALI+ YS+ G++  A + F S
Sbjct: 455 FALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDS 514

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +K  D+V+WT++I  YA HG S+E+I +FE + S  + PD + F+ +L+AC+H GLV  G
Sbjct: 515 IKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLG 574

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             Y+ LM ++Y I P  EHY C+ DLL R G L EA  ++ +MP           + AC+
Sbjct: 575 FYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACR 634

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
            HG +  A WAAE++L L P+    +  ++N+Y++     + A +RK+M+     K PG 
Sbjct: 635 DHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPGW 694

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SWI    +++TFV+  +SHP +  +  +L
Sbjct: 695 SWINSNDQLNTFVAGVQSHPLSKQITTIL 723



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 214/431 (49%), Gaps = 14/431 (3%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN-VR 159
           Q++ +   C+A D    +F++M  R+ ++W  LI+G +N   +      F  M +D+ ++
Sbjct: 93  QLMKLGKICEARD----MFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQ 148

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D    +  L+AC    ++  G  LH F +K G   + FVSSALVD+Y K G  E    V
Sbjct: 149 KDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSV 208

Query: 220 FDEVLCRDLVLWN-VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           F+ +  R++V W  V+V      C  DG ++ F+ M    +  D  TF+  + +    G 
Sbjct: 209 FENMTTRNVVSWTAVIVGLVHAGCSLDG-LSYFSEMWRSKVGYDSHTFAVALKASAESGL 267

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              G+ IH   IKQ F+    V  +L  MY+K    D   R+F  M+  +VVSW  +++ 
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMT 327

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           + Q GD   A+   + M +    P+E T AS++S+C +L+I+    Q+H +A++ G+   
Sbjct: 328 YVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDA 387

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           LS+ N++I  YSKCG +  A   F  +   D+++W++II  Y     +KE+      M  
Sbjct: 388 LSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSR 447

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEG--LRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
              +P+  A   VLS C    L+  G  +  + L I   H   ++  ++ L  +  R G 
Sbjct: 448 EGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDH---ETMVHSALISMYSRSGN 504

Query: 517 LVEAYDLLASM 527
           L EA  +  S+
Sbjct: 505 LQEASKIFDSI 515



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 226/443 (51%), Gaps = 16/443 (3%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           + +H+F + ALK SA+ G L  GK +H+  +K G      + N +  +Y KC+  D + +
Sbjct: 250 YDSHTF-AVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMR 308

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           LF +M   ++V+W  LI   +  G        F+RM   +V  +  TF S++ AC     
Sbjct: 309 LFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAI 368

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
            + G ++H   L++G      VS++++ LY KCG +++A  VFD +  +D++ W+ ++S 
Sbjct: 369 TKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISV 428

Query: 238 YALNCLGDGAIAVFNL---MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           Y   C G  A   FN    M  EG K + F  +S+++ CG++   + G+Q+H   +    
Sbjct: 429 Y---CQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGL 485

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D + +V ++L+ MY+++GN+ +A ++FD +   ++VSW  M+ G+ ++G  +EA+ L  +
Sbjct: 486 DHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFEN 545

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKC 412
           +      PD VT   IL++C    +  +    +   + N  Q   S E+   +I+   + 
Sbjct: 546 ISSVGLMPDYVTFIGILTACNHAGL-VDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRA 604

Query: 413 GSIAGALQCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLE 470
           G ++ A     ++  P D V W++++ A   HG    +I   E+ML   + P+S  A + 
Sbjct: 605 GRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLR--LHPNSAGAHIT 662

Query: 471 VLSACSHGGLVSEGLRYFNLMIS 493
           + +  S  G   E      LM S
Sbjct: 663 LANIYSASGRREEAAHVRKLMKS 685



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 18/374 (4%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFS 267
           K G + +AR +F+++  RD + W  +++ Y      + A+ +F+ M ++ G++ D F  S
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
             + +C    +   G  +HG  +K      V V+++LVDMY K G  +  C VF+ MT +
Sbjct: 156 VALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           NVVSW  ++VG    G   + +    +M +     D  T A  L +     +    + +H
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIH 275

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A  IK G      + N L   YSKC      ++ FG +  PD+V+WT++I  Y   G  +
Sbjct: 276 AQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEE 335

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY----FNLMISDYHILPDSEH 503
            +++ F++M    V P+   F  V+SAC++  +   G +       L + D   + +S  
Sbjct: 336 RALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNS-- 393

Query: 504 YTCLTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
              +  L  + GLL EA   +D +    I   S  +  +        +     W     +
Sbjct: 394 ---IITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSW-----M 445

Query: 561 ELEPSKPVNYALVS 574
             E  KP  +AL S
Sbjct: 446 SREGPKPNEFALAS 459


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 195/556 (35%), Positives = 302/556 (54%), Gaps = 4/556 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q H  ++K G    + +   ++ +Y + K F D EK+FD M  +++  +N +I     
Sbjct: 60  GQQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYAR 119

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F  ML   ++ +  TF +++ AC     IE G +      K GF     +
Sbjct: 120 AGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSI 179

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A++++YGK G   +A R+F  +  R+L+ W  ++S Y  +  G  A+  F  + L G+
Sbjct: 180 GNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGV 239

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D    +++++ C    + +LG QIHGLVIK  +   V + T+LVD+YAK GN+  A  
Sbjct: 240 NFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARM 299

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNG-DGRE-AVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
           VFDG+++K + S+N ++ GF +N  DG E  + L          PD VT + +LS   + 
Sbjct: 300 VFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANH 359

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S     R  HAYAIK G +A LS+ NA+I  Y+KCGSI  A + F  + + D ++W ++I
Sbjct: 360 STLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMI 419

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            AYA HG   + + +FE+M+     PD I  L +L AC++ GL  +G+  FN+M   Y I
Sbjct: 420 SAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGI 479

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLLGR G L EA D++   P    +      +  CK+ G     K A++
Sbjct: 480 KPLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASK 539

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            LLEL P +  +Y LVSN+YA ER   + A++R +M D    K  G SWIEI  ++H FV
Sbjct: 540 YLLELSPVEAGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEIDDKVHHFV 599

Query: 618 SSDRSHPQAVHMYAML 633
           +S + HP++  +YA L
Sbjct: 600 ASGKDHPESNEIYAEL 615



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 206/429 (48%), Gaps = 8/429 (1%)

Query: 124 MRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M VRN +TW +LI G +  N   +       M      L+  T + +L+AC   D    G
Sbjct: 1   MLVRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFG 60

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           ++ H F++K GF  N  V ++L+ +Y +     DA +VFD + C+D+  +N M+  YA  
Sbjct: 61  QQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARA 120

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLV 300
             G+ AI VF  M   G++ + +TF++++++C G LG  + G Q  GL  K  F  +  +
Sbjct: 121 GNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEE-GEQFLGLSFKYGFLNETSI 179

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             ++++MY K G   +A R+F  MT +N++SW  ++ G+ ++GDG++AV    ++     
Sbjct: 180 GNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGV 239

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D   L +IL  C          Q+H   IK G    ++I  AL++ Y+KCG++  A  
Sbjct: 240 NFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARM 299

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKES--IEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            F  +    + ++ +I+  +  +    E   I +F       ++PD + F  +LS  ++ 
Sbjct: 300 VFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANH 359

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
             +  G  Y    I       D      +  +  + G + EA+ +   M  +  S +  A
Sbjct: 360 STLGRGRCYHAYAIKT-GFEADLSVANAVITMYAKCGSIEEAHRMFNVMN-DHDSISWNA 417

Query: 539 FIGACKVHG 547
            I A  +HG
Sbjct: 418 MISAYALHG 426


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 306/566 (54%), Gaps = 7/566 (1%)

Query: 82  GKQLHSHIMKLGLCNKLS--LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           G+  H+ I+K  L N L   + N ++++Y K    +  + L      R++VTW  LI+G 
Sbjct: 25  GRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS 83

Query: 140 INCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
           +  G   +   +F  M  D+++ +  TF    +A        VG+++H+  +K G   + 
Sbjct: 84  VQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDV 143

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           FV  +  D+Y K G  E+AR++FDE+  R++  WN  +S   L    D A+  F   R E
Sbjct: 144 FVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHE 203

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G + +  TF + +N+C      +LGRQ+HG V++  F+ DV VA  L+D Y K   +  +
Sbjct: 204 GWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCS 263

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +F G++  N VSW +M+V + QN +  +A  +     +    P +  ++S+LS+C  L
Sbjct: 264 EIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGL 323

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S+    + VH  A+K  V   + + +AL++ Y KCGSI  A + F  + E +LVTW ++I
Sbjct: 324 SVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMI 383

Query: 438 GAYAFHGLSKESIEVFEKML--SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           G YA  G +  ++ +F++M   SH V P+ + F+ VLSACS  G V+ G+  F  M   Y
Sbjct: 384 GGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRY 443

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I P +EHY C+ DLLGR G++ +AY  +  MPI P     GA +GA K+ G   L K A
Sbjct: 444 GIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVA 503

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A+ L EL+P    N+ L+SN++A+   W +   +RK M+D    K  GCSWI     +H 
Sbjct: 504 ADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHV 563

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLME 641
           F + D SH +   + AML  + G ME
Sbjct: 564 FQAKDTSHERNSEIQAMLAKLRGEME 589



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 195/398 (48%), Gaps = 32/398 (8%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD---------DMEK 119
           A K S        GKQ+H+  +K G         Q+  V+V C AFD         +  K
Sbjct: 114 AFKASGSLRSPLVGKQVHALAVKAG---------QISDVFVGCSAFDMYSKAGLTEEARK 164

Query: 120 LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FDEM  RNI TWN  +S  +  G   +    F     +    + ITF + L AC  A  
Sbjct: 165 MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASY 224

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           + +GR+LH F+L+ GF  +  V++ L+D YGKC  V  +  +F  +   + V W  M+  
Sbjct: 225 LRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVS 284

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y  N   + A  VF   R EG++   F  SS++++C  L   ++G+ +H L +K     +
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGN 344

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + V ++LVDMY K G+I+DA R FD M  +N+V+WN M+ G+   G    AV L  +M  
Sbjct: 345 IFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTC 404

Query: 358 GS--FCPDEVTLASILSSC---GSLSISCETRQVH--AYAIKNGVQAFLSIENALINAYS 410
           GS    P+ VT   +LS+C   GS+++  E  +     Y I+ G + +  +    ++   
Sbjct: 405 GSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACV----VDLLG 460

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSK 447
           + G +  A Q    +   P +  W +++GA    G S+
Sbjct: 461 RAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 498



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 1/213 (0%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           + +SLV S  +   S+LGR  H  +IK     L   +   LV+MY+K    + A  +   
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSL 67

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
              ++VV+W  ++ G  QNG    A+    +M + S  P++ T      + GSL      
Sbjct: 68  TPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           +QVHA A+K G  + + +  +  + YSK G    A + F  + E ++ TW + +      
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLE 187

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           G   +++  F +       P+ I F   L+AC+
Sbjct: 188 GRYDDALTAFIEFRHEGWEPNLITFCAFLNACA 220



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A    L+ GK +H+  +K  +   + + + ++ +Y KC + +D E+ FDEM  
Sbjct: 314 SSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPE 373

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGR 182
           RN+VTWN +I G  + G        F  M   + R+  +++TF  +L AC +A  + VG 
Sbjct: 374 RNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGM 433

Query: 183 RL-HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVSCYAL 240
            +  S   + G        + +VDL G+ G VE A +   ++  R  V +W  ++    +
Sbjct: 434 EIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKM 493

Query: 241 NCLGD-GAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
               + G +A  NL  L+ +  G++   S++  + G    + L R+
Sbjct: 494 FGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRK 539


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/573 (32%), Positives = 320/573 (55%), Gaps = 12/573 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---LFDEMR 125
           A+      G +++G ++H +I++ G  +  S+QN +L +Y    A +DME+   LFDEM 
Sbjct: 156 AIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMY----ADNDMERAEELFDEMC 211

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGR 182
            R++++W+ +I G +  G        F  M  + ++ LD IT  S+L+AC    DI +GR
Sbjct: 212 ERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGR 271

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H  ++  G   + FV ++++D+Y KC   E A + F+E+ CR+ V WN ++S      
Sbjct: 272 SVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTE 331

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+++F  M   G + D  T  +L+ SC         + IH +VI+  ++L+  V  
Sbjct: 332 KHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVIN 391

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+D Y+K   I+ A ++FD +  K+ VSW+ M+ GF   G   EA+ L ++M Q    P
Sbjct: 392 SLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKP 451

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           + VT+ S+L +    +    ++  H  AI+ G+ A +++  A+++ Y+KCG I  + + F
Sbjct: 452 NGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAF 511

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + E ++V+W ++I A   +GL+++++ +  +M  H ++P+ +  L VLSACSHGGLV 
Sbjct: 512 DQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVE 571

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT--LGAFI 540
           EGL +F  M+ D+ + P  EHY+C+ D+L R G L  A +L+  MP   R      GA +
Sbjct: 572 EGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALL 631

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            AC+  G+  L   AA ++LELEP     Y L S++YA+   W D AR+R +++      
Sbjct: 632 SACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRV 691

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           V G S + +  +   FV+ D SHP+A  ++ ++
Sbjct: 692 VAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVV 724



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 252/504 (50%), Gaps = 14/504 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ GK +H+ ++K G  +  S  N VL  Y+K  A D    +FD MR R+ V+WN +I G
Sbjct: 65  VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHG 124

Query: 139 IINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G +     +FR+  +     +  T    + AC     +E G ++H +I++ GF   
Sbjct: 125 HLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDI 184

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMR 255
             V ++L+ +Y     +E A  +FDE+  RD++ W+VM+  Y        A+ +F  +  
Sbjct: 185 PSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTS 243

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
              ++ D  T  S++ +C   G   +GR +HG+VI +  D D+ V  S++DMY+K  + +
Sbjct: 244 NASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHE 303

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A + F+ M  +N VSWN+++ G  +     EA+ L   M +  F  DEVTL ++L SC 
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                 + + +H+  I+ G +    + N+LI+AYSKC  I  A + F  +K  D V+W++
Sbjct: 364 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSA 423

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  +   G   E+I +F++M     +P+ +  L +L A S    +        + I   
Sbjct: 424 MIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIR-R 482

Query: 496 HILPDSEHYTCLTDLL---GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG--SIG 550
            +  +    T + D+    G +GL  +A+D +    I     + GA I AC ++G     
Sbjct: 483 GLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIV----SWGAMIAACGMNGLARDA 538

Query: 551 LAKWAAEKLLELEPSKPVNYALVS 574
           LA  +  KL  L+P+     +++S
Sbjct: 539 LALLSEMKLHGLKPNVVTTLSVLS 562



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 164/319 (51%), Gaps = 5/319 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D    +S+L+AC  +  +  G+ +H+ +LK GF       ++++D Y K G ++ A  VF
Sbjct: 49  DPTLVHSILKAC-SSLPVRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVF 107

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D +  RD V WN+M+  +      D  +  F   R+   + +  T    +++C +LG+ +
Sbjct: 108 DSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAME 167

Query: 281 LGRQIHGLVIKQSFDLDVL-VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
            G ++HG +I+  F LD+  V  SL+ MYA N +++ A  +FD M  ++V+SW+ M+ G+
Sbjct: 168 EGLKMHGYIIRSGF-LDIPSVQNSLLSMYADN-DMERAEELFDEMCERDVISWSVMIGGY 225

Query: 340 GQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            Q G+ + A++L  +M    S   D +T+ S+L +C +       R VH   I  G+   
Sbjct: 226 VQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYD 285

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L + N++I+ YSKC     A + F  +   + V+W SII          E++ +F  M  
Sbjct: 286 LFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGK 345

Query: 459 HAVRPDSIAFLEVLSACSH 477
              R D +  + +L +C +
Sbjct: 346 AGFRADEVTLVNLLQSCKY 364



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S++ +C +L   + G+ IH  ++KQ FD       S++D Y K G +D A  VFD M ++
Sbjct: 55  SILKACSSL-PVRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSR 113

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           + VSWN M+ G    G   + +   R     +F P+  TL   + +C SL    E  ++H
Sbjct: 114 DSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMH 173

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
            Y I++G     S++N+L++ Y+    +  A + F  + E D+++W+ +IG Y   G +K
Sbjct: 174 GYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAK 232

Query: 448 ESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            ++++F +M S+A +  D I  + VL AC++ G +S G     ++I
Sbjct: 233 MALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVI 278


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/593 (32%), Positives = 328/593 (55%), Gaps = 17/593 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---LFDEMR 125
           A+      G +++G ++H +I++ G  +  S+QN +L +Y    A +DME+   LFDEM 
Sbjct: 142 AIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMY----ADNDMERAEELFDEMC 197

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGR 182
            R++++W+ +I G +  G        F  M  + ++ LD IT  S+L+AC    DI +GR
Sbjct: 198 ERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGR 257

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H  ++  G   + FV ++++D+Y KC   E A + F+E+ CR+ V WN ++S      
Sbjct: 258 SVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTE 317

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+++F  M   G + D  T  +L+ SC         + IH +VI+  ++L+  V  
Sbjct: 318 KHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVIN 377

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+D Y+K   I+ A ++FD +  K+ VSW+ M+ GF   G   EA+ L ++M Q    P
Sbjct: 378 SLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKP 437

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           + VT+ S+L +    +    ++  H  AI+ G+ A +++  A+++ Y+KCG I  + + F
Sbjct: 438 NGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAF 497

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + E ++V+W ++I A   +GL+++++ +  +M  H ++P+ +  L VLSACSHGGLV 
Sbjct: 498 DQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVE 557

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR--SDTLGAFI 540
           EGL +F  M+ D+ + P  EHY+C+ D+L R G L  A +L+  MP   R  +   GA +
Sbjct: 558 EGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALL 617

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            AC+  G+  L   AA ++LELEP     Y L S++YA+   W D AR+R +++      
Sbjct: 618 SACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRV 677

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML-----CTVFGLMEENNVSGH 648
           V G S + +  +   FV+ D SHP+A  ++ ++     C       E++ SG+
Sbjct: 678 VAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVVEQLHDCMKIAERNESDCSGY 730



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 241/495 (48%), Gaps = 36/495 (7%)

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLD 156
           S  N VL  Y+K  A D    +FD MR R+ V+WN +I G ++ G +     +FR+  + 
Sbjct: 71  STGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVI 130

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
               +  T    + AC     +E G ++H +I++ GF     V ++L+ +Y     +E A
Sbjct: 131 AFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADND-MERA 189

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGT 275
             +FDE+  RD++ W+VM+  Y        A+ +F  +     ++ D  T  S++ +C  
Sbjct: 190 EELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACAN 249

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
            G   +GR +HG+VI +  D D+ V  S++DMY+K  + + A + F+ M  +N VSWN++
Sbjct: 250 TGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSI 309

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G  +     EA+ L   M +  F  DEVTL ++L SC       + + +H+  I+ G 
Sbjct: 310 ISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY 369

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +    + N+LI+AYSKC  I  A + F  +K  D V+W+++I  +   G   E+I +F++
Sbjct: 370 ELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQE 429

Query: 456 MLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHY 504
           M     +P+ +  L +L A S           HG  +  GL              +    
Sbjct: 430 MNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLA------------AEVAVG 477

Query: 505 TCLTDLL---GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG--SIGLAKWAAEKL 559
           T + D+    G +GL  +A+D +     E    + GA I AC ++G     LA  +  KL
Sbjct: 478 TAILDMYAKCGEIGLSRKAFDQIP----EKNIVSWGAMIAACGMNGLARDALALLSEMKL 533

Query: 560 LELEPSKPVNYALVS 574
             L+P+     +++S
Sbjct: 534 HGLKPNVVTTLSVLS 548



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 4/288 (1%)

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           GF       ++++D Y K G ++ A  VFD +  RD V WN+M+  +      D  +  F
Sbjct: 65  GFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWF 124

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL-VATSLVDMYAK 310
              R+   + +  T    +++C +LG+ + G ++HG +I+  F LD+  V  SL+ MYA 
Sbjct: 125 RQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGF-LDIPSVQNSLLSMYAD 183

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLAS 369
           N +++ A  +FD M  ++V+SW+ M+ G+ Q G+ + A++L  +M    S   D +T+ S
Sbjct: 184 N-DMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVS 242

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L +C +       R VH   I  G+   L + N++I+ YSKC     A + F  +   +
Sbjct: 243 VLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRN 302

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            V+W SII          E++ +F  M     R D +  + +L +C +
Sbjct: 303 TVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKY 350



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 2/192 (1%)

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
           FD       S++D Y K G +D A  VFD M +++ VSWN M+ G    G   + +   R
Sbjct: 66  FDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFR 125

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
                +F P+  TL   + +C SL    E  ++H Y I++G     S++N+L++ Y+   
Sbjct: 126 QARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-N 184

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVL 472
            +  A + F  + E D+++W+ +IG Y   G +K ++++F +M S+A +  D I  + VL
Sbjct: 185 DMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVL 244

Query: 473 SACSHGGLVSEG 484
            AC++ G +S G
Sbjct: 245 KACANTGDISMG 256



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 16/150 (10%)

Query: 344 DGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           D  EA      M + G+   D   + SIL +C SL                G  +  S  
Sbjct: 29  DSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLP---------------GFDSLTSTG 73

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N++++ Y K G++  AL  F S++  D V+W  +I  +   G S + +  F +    A  
Sbjct: 74  NSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFE 133

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           P+    +  + AC   G + EGL+    +I
Sbjct: 134 PNVSTLVLAIHACRSLGAMEEGLKMHGYII 163


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/596 (32%), Positives = 315/596 (52%), Gaps = 3/596 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK  +    ++ G ++HSH    GL + + +   ++  Y KC    + ++LF  M 
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 126 VRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V WN +I+G  +     +      +M  + +  +  T   +L    +A  +  G+ 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKA 231

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH + ++  F     V + L+D+Y KC  +  AR++FD +  R+ V W+ M+  Y  +  
Sbjct: 232 LHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDC 291

Query: 244 GDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
              A+ +F+ M L + M     T  S++ +C  L     GR++H  +IK    LD+L+  
Sbjct: 292 MKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGN 351

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+ MYAK G IDDA R FD M  K+ VS++ +V G  QNG+   A+ + R M      P
Sbjct: 352 TLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T+  +L +C  L+        H Y I  G      I NALI+ YSKCG I+ A + F
Sbjct: 412 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 471

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   D+V+W ++I  Y  HGL  E++ +F  +L+  ++PD I F+ +LS+CSH GLV 
Sbjct: 472 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVM 531

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG  +F+ M  D+ I+P  EH  C+ D+LGR GL+ EA+  + +MP EP      A + A
Sbjct: 532 EGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++H +I L +  ++K+  L P    N+ L+SN+Y++   W D A +R   +D    K+P
Sbjct: 592 CRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIP 651

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           GCSWIEI G +H FV  D+SH Q   +   L  +   M+       C+ + ++++E
Sbjct: 652 GCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEE 707



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 218/423 (51%), Gaps = 3/423 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+   +   L + K++H H +K       S+ +++  +Y+ C       +LFDE+ 
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             +++ WN +I      G        +  ML   VR +  T+  +L+AC     IE G  
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS     G   + FV +ALVD Y KCG + +A+R+F  +  RD+V WN M++  +L  L
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D A+ +   M+ EG+  +  T   ++ + G   +   G+ +HG  +++SFD  V+V T 
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCP 362
           L+DMYAK   +  A ++FD M  +N VSW+ M+ G+  +   +EA++L   M L+ +  P
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDP 310

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
             VTL S+L +C  L+     R++H Y IK G    + + N L++ Y+KCG I  A++ F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   D V++++I+     +G +  ++ +F  M    + PD    L VL ACSH   + 
Sbjct: 371 DXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 483 EGL 485
            G 
Sbjct: 431 HGF 433



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 193/387 (49%), Gaps = 5/387 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL AC+Q+  +   +++H   LK     +  V   L  LY  C  V  ARR+FDE+    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           ++LWN ++  YA N   DGAI +++ M   G++ + +T+  ++ +C  L + + G +IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
                  + DV V T+LVD YAK G + +A R+F  M+ ++VV+WN M+ G    G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           AV+L+  M +   CP+  T+  +L + G        + +H Y ++      + +   L++
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSI 466
            Y+KC  +  A + F  +   + V+W+++IG Y      KE++E+F++M L  A+ P  +
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPV 313

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
               VL AC+    +S G R  +  I     + D      L  +  + G++ +A      
Sbjct: 314 TLGSVLRACAKLTDLSRG-RKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDX 372

Query: 527 MPIEPR-SDTLGAFIGACKVHGSIGLA 552
           M   P+ S +  A +  C  +G+  +A
Sbjct: 373 M--NPKDSVSFSAIVSGCVQNGNAAVA 397


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 317/574 (55%), Gaps = 17/574 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q KQ H  +++LGL     L N +L   +   A      +F +    NI  +NTLI G
Sbjct: 16  LHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRG 75

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD-IEVGRRLHSFILKVGFGL 195
           +++     +    +  M       D+ TF  +L+AC +      VG  LHS ++K GF  
Sbjct: 76  MVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDW 135

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-CLGDGAIAVFNLM 254
           + FV + LV LY K GF+ DAR+VFDE+  +++V W  ++  Y  + C G+ A+ +F  +
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGE-ALGLFRGL 194

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G++ D FT   ++ +C  +G    GR I G + +     +V VATSLVDMYAK G++
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSM 254

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           ++A RVFDGM  K+VV W+ ++ G+  NG  +EA+ +  +M + +  PD   +  + S+C
Sbjct: 255 EEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314

Query: 375 ---GSLSISCETRQVHAYAIKNGVQAFLS---IENALINAYSKCGSIAGALQCFGSVKEP 428
              G+L +    R      + +G   FLS   +  ALI+ Y+KCGS+A A + F  ++  
Sbjct: 315 SRLGALELGNWAR-----GLMDG-DEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRK 368

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D V + ++I   A  G    +  VF +M+   ++PD   F+ +L  C+H GLV +G RYF
Sbjct: 369 DCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYF 428

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
           + M S + + P  EHY C+ DL  R GLLVEA DL+ SMP+E  S   GA +G C++H  
Sbjct: 429 SGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKD 488

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
             LA+   ++L+ELEP    +Y L+SN+Y++   W +  ++R  +      K+PGCSW+E
Sbjct: 489 TQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVE 548

Query: 609 IAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           + G +H F+  D SHP +  +Y  L ++F  + E
Sbjct: 549 VDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLRE 582



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 195/395 (49%), Gaps = 26/395 (6%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           +   G  LHS ++K G    + ++  ++ +Y K     D  K+FDE+  +N+V+W  +I 
Sbjct: 117 YFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIIC 176

Query: 138 GIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           G I   C G     FR +L   +R D  T   +L AC +  D+  GR +  ++ + G   
Sbjct: 177 GYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVG 236

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N FV+++LVD+Y KCG +E+ARRVFD ++ +D+V W+ ++  YA N +   A+ VF  M+
Sbjct: 237 NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQ 296

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            E ++ D +    + ++C  LG+ +LG    GL+    F  + ++ T+L+D YAK G++ 
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVA 356

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  VF GM  K+ V +N ++ G    G    A  +   M++    PD  T   +L  C 
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGC- 415

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENA------------LINAYSKCGSIAGALQCFG 423
                      HA  + +G + F  + +             +++  ++ G +  A     
Sbjct: 416 ----------THAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIR 465

Query: 424 SVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           S+  E + + W +++G    H  ++ +  V ++++
Sbjct: 466 SMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLI 500



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 4/294 (1%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           + L   ++ G L  G+ +  ++ + G    + +   ++ +Y KC + ++  ++FD M  +
Sbjct: 208 RILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEK 267

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++V W+ LI G  + G        F  M  +NVR D      +  AC +   +E+G    
Sbjct: 268 DVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWAR 327

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             +    F  N  + +AL+D Y KCG V  A+ VF  +  +D V++N ++S  A+     
Sbjct: 328 GLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVG 387

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSL 304
            A  VF  M   GM+ D  TF  L+  C   G    G R   G+    S    +     +
Sbjct: 388 AAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCM 447

Query: 305 VDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           VD+ A+ G + +A  +   M  + N + W  ++ G   + D + A  +L+ +++
Sbjct: 448 VDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIE 501


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 280/474 (59%), Gaps = 3/474 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F RM+  ++  ++ TF     +C     +   R  HS + K+    +   + +L+ +Y +
Sbjct: 104 FHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSR 163

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSS 268
           CG V  AR+VFDE+  RDLV WN M++ YA       A+ VF  M R +G + D  +  S
Sbjct: 164 CGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVS 223

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++ +CG LG  +LGR + G V+++   L+  + ++L+ MYAK G++  A R+FDGM A++
Sbjct: 224 VLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARD 283

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           V++WN ++ G+ QNG   EA+ L   M +     +++TL ++LS+C ++      +Q+  
Sbjct: 284 VITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDE 343

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           YA + G Q  + +  ALI+ Y+KCGS+A A + F  + + +  +W ++I A A HG +KE
Sbjct: 344 YASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKE 403

Query: 449 SIEVFEKMLSHA--VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           ++ +F+ M       RP+ I F+ +LSAC H GLV+EG R F++M + + ++P  EHY+C
Sbjct: 404 ALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSC 463

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + DLL R G L EA+DL+  MP +P   TLGA +GAC+   ++ + +     +LE++PS 
Sbjct: 464 MVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEVDPSN 523

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
             NY + S +YA+   W D AR+R +MR     K PGCSWIE+   +H F + D
Sbjct: 524 SGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAGD 577



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 214/424 (50%), Gaps = 38/424 (8%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A    L   +  HS + KL L +     + ++ +Y +C       K+FDE+  R++V+WN
Sbjct: 127 ANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWN 186

Query: 134 TLISGIIN--CGGNVTPYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           ++I+G     C       F  M   D    D ++  S+L AC +  D+E+GR +  F+++
Sbjct: 187 SMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVE 246

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G  LN ++ SAL+ +Y KCG +  ARR+FD +  RD++ WN ++S YA N + D AI++
Sbjct: 247 RGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISL 306

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F+ M+ + +  +  T ++++++C T+G+  LG+QI     ++ F  D+ VAT+L+DMYAK
Sbjct: 307 FHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAK 366

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLA 368
            G++  A RVF  M  KN  SWN M+     +G  +EA+ L + M    G   P+++T  
Sbjct: 367 CGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFV 426

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
            +LS+C           VHA  +  G + F  +                    FG V  P
Sbjct: 427 GLLSAC-----------VHAGLVNEGYRLFDMMST-----------------LFGLV--P 456

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
            +  ++ ++   A  G   E+ ++ EKM     +PD +    +L AC     V  G R  
Sbjct: 457 KIEHYSCMVDLLARAGHLYEAWDLIEKMPE---KPDKVTLGALLGACRSKKNVDIGERVI 513

Query: 489 NLMI 492
            +++
Sbjct: 514 RMIL 517



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 146/316 (46%), Gaps = 47/316 (14%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    + G L+ G+ +   +++ G+     + + ++ +Y KC       ++FD M  R++
Sbjct: 225 LGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDV 284

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           +TWN +ISG    G        F  M  D V  + IT  ++L AC     +++G+++  +
Sbjct: 285 ITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEY 344

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
             + GF  + FV++AL+D+Y KCG +  A+RVF E+  ++   WN M+S  A +     A
Sbjct: 345 ASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEA 404

Query: 248 IAVFNLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           +++F  M  E  G + +  TF  L+++C           +H                   
Sbjct: 405 LSLFQCMSDEGGGARPNDITFVGLLSAC-----------VHA------------------ 435

Query: 306 DMYAKNGNIDDACRVFDGMTA-----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
                 G +++  R+FD M+        +  ++ MV    + G   EA  L+  M +   
Sbjct: 436 ------GLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEK-- 487

Query: 361 CPDEVTLASILSSCGS 376
            PD+VTL ++L +C S
Sbjct: 488 -PDKVTLGALLGACRS 502



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+ L   M+  S  P+  T      SC +L++    R  H+   K  + +     ++LI 
Sbjct: 100 ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLIT 159

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSI 466
            YS+CG +A A + F  +   DLV+W S+I  YA  G ++E++EVF +M       PD +
Sbjct: 160 MYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEM 219

Query: 467 AFLEVLSACSHGG 479
           + + VL AC   G
Sbjct: 220 SLVSVLGACGELG 232


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/559 (32%), Positives = 314/559 (56%), Gaps = 9/559 (1%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN 157
           L   ++  Y +    ++   LFDEM  R++V W  +I+G  +   N   +  F  M+   
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF-VEDA 216
              +  T +S+L++C     +  G  +H  ++K+G   + +V +A++++Y  C   +E A
Sbjct: 107 TSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAA 166

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F ++  ++ V W  +++ +     G G + ++  M LE  +   +  +  V +  ++
Sbjct: 167 CLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASI 226

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            S   G+QIH  VIK+ F  ++ V  S++D+Y + G + +A   F  M  K++++WNT++
Sbjct: 227 DSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI 286

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
               +  D  EA+ + +      F P+  T  S++++C +++     +Q+H    + G  
Sbjct: 287 SEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFN 345

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGS-VKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             + + NALI+ Y+KCG+I  + + FG  V   +LV+WTS++  Y  HG   E++E+F+K
Sbjct: 346 KNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDK 405

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M+S  +RPD I F+ VLSAC H GLV +GL+YFN+M S+Y I PD + Y C+ DLLGR G
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL-AKWAAEKLLELEPSKPVNYALVS 574
            + EAY+L+  MP +P   T GA +GACK H   GL ++ AA K++EL+P     Y ++S
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLS 525

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLC 634
            +YA+E  W D AR+RKMMR   + K  G SWI +  ++ +F  SD+  P A  +Y++L 
Sbjct: 526 YIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLG 585

Query: 635 TVFGLMEENNVSGHCNVLD 653
               L+EE   +G+   LD
Sbjct: 586 L---LIEETREAGYVPELD 601



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 137/262 (52%), Gaps = 3/262 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A++ SA    +  GKQ+H+ ++K G  + L + N +L +Y +C    + +  F EM  ++
Sbjct: 219 AVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKD 278

Query: 129 IVTWNTLISGIINC-GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++TWNTLIS +           F+R        +  TF SL+ AC     +  G++LH  
Sbjct: 279 LITWNTLISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGR 338

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDG 246
           I + GF  N  +++AL+D+Y KCG + D++RVF E++  R+LV W  M+  Y  +  G  
Sbjct: 339 IFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAE 398

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLV 305
           A+ +F+ M   G++ D   F +++++C   G  + G +   ++  +   + D  +   +V
Sbjct: 399 AVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVV 458

Query: 306 DMYAKNGNIDDACRVFDGMTAK 327
           D+  + G I +A  + + M  K
Sbjct: 459 DLLGRAGKIGEAYELVERMPFK 480



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           ++AT+L+  Y + G +++A  +FD M  ++VV+W  M+ G+  +     A +   +M++ 
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG-SIAG 417
              P+E TL+S+L SC ++ +      VH   +K G++  L ++NA++N Y+ C  ++  
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           A   F  +K  + VTWT++I  +   G     ++++++ML
Sbjct: 166 ACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQML 205



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM- 124
           ++  +   A    L  G+QLH  I + G    + L N ++ +Y KC    D +++F E+ 
Sbjct: 316 FTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIV 375

Query: 125 RVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             RN+V+W +++ G  +   G      F +M+   +R D I F ++L AC  A  +E G 
Sbjct: 376 DRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGL 435

Query: 183 RLHSFILKVGFGLNC--FVSSALVDLYGKCGFVEDARRVFDEV 223
           +  + +++  +G+N    + + +VDL G+ G + +A  + + +
Sbjct: 436 KYFN-VMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERM 477


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/597 (32%), Positives = 319/597 (53%), Gaps = 5/597 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK  +    ++ G ++HSH    GL + + +   ++  Y KC    + ++LF  M 
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V WN +I+G    G   +      +M  + +  +  T   +L    +A  +  G+ 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKA 231

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-ALNC 242
           LH + ++  F     V + L+D+Y KC  +  AR++FD +  R+ V W+ M+  Y A +C
Sbjct: 232 LHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 291

Query: 243 LGDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
           + + A+ +F+ M L + M     T  S++ +C  L     GR++H  +IK    LD+L+ 
Sbjct: 292 MKE-ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLG 350

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +L+ MYAK G IDDA R FD M  K+ VS++ +V G  QNG+   A+ + R M      
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID 410

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD  T+  +L +C  L+        H Y I  G      I NALI+ YSKCG I+ A + 
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 470

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   D+V+W ++I  Y  HGL  E++ +F  +L+  ++PD I F+ +LS+CSH GLV
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 530

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG  +F+ M  D+ I+P  EH  C+ D+LGR GL+ EA+  + +MP EP      A + 
Sbjct: 531 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 590

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC++H +I L +  ++K+  L P    N+ L+SN+Y++   W D A +R   +D    K+
Sbjct: 591 ACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKI 650

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           PGCSWIEI G +H FV  D+SH Q   +   L  +   M+       C+ + ++++E
Sbjct: 651 PGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEE 707



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 218/423 (51%), Gaps = 3/423 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+   +   L + K++H H +K       S+ +++  +Y+ C       +LFDE+ 
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             +++ WN +I      G        +  ML   VR +  T+  +L+AC     IE G  
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS     G   + FV +ALVD Y KCG + +A+R+F  +  RD+V WN M++  +L  L
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D A+ +   M+ EG+  +  T   ++ + G   +   G+ +HG  +++SFD  V+V T 
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCP 362
           L+DMYAK   +  A ++FD M  +N VSW+ M+ G+  +   +EA++L   M L+ +  P
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDP 310

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
             VTL S+L +C  L+     R++H Y IK G    + + N L++ Y+KCG I  A++ F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   D V++++I+     +G +  ++ +F  M    + PD    L VL ACSH   + 
Sbjct: 371 DEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 483 EGL 485
            G 
Sbjct: 431 HGF 433



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 194/387 (50%), Gaps = 5/387 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL AC+Q+  +   +++H   LK     +  V   L  LY  C  V  ARR+FDE+    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           ++LWN ++  YA N   DGAI +++ M   G++ + +T+  ++ +C  L + + G +IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
                  + DV V T+LVD YAK G + +A R+F  M+ ++VV+WN M+ G    G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           AV+L+  M +   CP+  T+  +L + G        + +H Y ++      + +   L++
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSI 466
            Y+KC  +  A + F  +   + V+W+++IG Y      KE++E+F++M L  A+ P  +
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
               VL AC+    +S G +    +I    +L D      L  +  + G++ +A      
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL-DILLGNTLLSMYAKCGVIDDAIRFFDE 372

Query: 527 MPIEPR-SDTLGAFIGACKVHGSIGLA 552
           M   P+ S +  A +  C  +G+  +A
Sbjct: 373 M--NPKDSVSFSAIVSGCVQNGNAAVA 397


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 316/562 (56%), Gaps = 17/562 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QLH+  +K G    + + N ++ +Y + +   D  K+FDEM  R+ V+W+ +I+G   
Sbjct: 190 GWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQ 249

Query: 142 CGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G N       F +M+ + V+ D++     L  C    ++E+G+++H   +K G   +  
Sbjct: 250 EGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTS 309

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V + L+  Y KC  +EDA+ VF+ +  R+++ W  M+S Y      +GA+++FN MRL+G
Sbjct: 310 VGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLYE-----EGAVSLFNKMRLDG 364

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  +  TF  L+++       + G  +HGL IK  F  ++ V  SL+ MYAK   + DA 
Sbjct: 365 VYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDAS 424

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS-L 377
           RVF  +  + ++SWN ++ G+ QN   +EA++     +   + P+E T  S+L++  +  
Sbjct: 425 RVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIM-EYKPNEYTFGSVLNAISAGE 483

Query: 378 SISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            IS +  Q  H++ IK G+     I  AL++ Y+K GSI  + + F    +     WT++
Sbjct: 484 DISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTAL 543

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG  +  I++FE+M    ++PD++ FL VL+ACS   +V  G ++FN+MI D+ 
Sbjct: 544 ISGYAQHGDYESVIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHM 603

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P+ EHY+C+ D+LGR G L EA ++LA +P  P    L + +GAC+ HG++ +A+  A
Sbjct: 604 IEPEGEHYSCMVDMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIA 663

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG----- 611
             L++ EP +   Y L+SN+YA +  W  VA++RK MR+    K  G SW+++       
Sbjct: 664 NDLMKKEPLESGPYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVDVGNFGASN 723

Query: 612 -EIHTFVSSDRSHPQAVHMYAM 632
             +H F S D SHPQ+  ++ M
Sbjct: 724 LYLHGFSSGDVSHPQSEEIFRM 745



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 219/420 (52%), Gaps = 12/420 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L + A  GF + G+Q+H  ++  G  + +++ N ++++Y K    +    +F  + 
Sbjct: 76  FTLVLALKACCGFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLH 135

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
             +IV+WNT++SG      N   +  RM L+ V+ D +T+ + L  C+  ++   G +LH
Sbjct: 136 DPDIVSWNTILSGF-EKSENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLH 194

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +  LK GF  + FV +ALV +Y +   + DAR+VFDE+  RD V W+ M++ YA    GD
Sbjct: 195 TLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQE--GD 252

Query: 246 G---AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               AI VF  M  EG+K D    +  ++ CG   + +LG+QIH L +K   +    V  
Sbjct: 253 NGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGN 312

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            L+  Y+K   I+DA  VF+ +  +NV+SW TM+  + +      AV L   M      P
Sbjct: 313 VLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLYEEG-----AVSLFNKMRLDGVYP 367

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++VT   +L +    ++  +   VH   IK    + L++ N+LI  Y+K   +  A + F
Sbjct: 368 NDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVF 427

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   ++++W ++I  YA + L +E++E F   +    +P+   F  VL+A S G  +S
Sbjct: 428 IELPYREIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVLNAISAGEDIS 486



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 6/218 (2%)

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D FT    + +C   G  KLGRQIHG VI   F   + V+ SL++MY K+G ++ A  V
Sbjct: 73  ADEFTLVLALKAC--CGFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSV 130

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F  +   ++VSWNT++ GF ++     A+     M       D VT  + LS C      
Sbjct: 131 FQNLHDPDIVSWNTILSGFEKS---ENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEF 187

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
               Q+H  A+K G +  + + NAL+  YS+   +  A + F  +   D V+W+++I  Y
Sbjct: 188 LFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGY 247

Query: 441 AFHGLSK-ESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A  G +  ++I VF +M+   V+ D++     LS C H
Sbjct: 248 AQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGH 285



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 115/260 (44%), Gaps = 48/260 (18%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G++ HSH++K+GL     +   +L +Y K  +  + +++F+E   ++   W  LISG
Sbjct: 487 LKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTALISG 546

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK------ 190
               G   +V   F  M  + ++ D + F S+L AC +   +++GR+  + ++K      
Sbjct: 547 YAQHGDYESVIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEP 606

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G   +C     +VD+ G+ G +E+A  +                               
Sbjct: 607 EGEHYSC-----MVDMLGRAGRLEEAEEI------------------------------- 630

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
             L R+ G  G      SL+ +C T G+ ++  +I   ++K+   L+      + ++YA+
Sbjct: 631 --LARIPGGPG-VSALQSLLGACRTHGNVEMAERIANDLMKKE-PLESGPYVLMSNLYAQ 686

Query: 311 NGNIDDACRVFDGMTAKNVV 330
            G+ +   +V   M  + V+
Sbjct: 687 KGDWEKVAKVRKEMRERGVM 706


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 286/469 (60%), Gaps = 3/469 (0%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           ++LL+ C   + +  G+ +H+ +L   F  +  + + L++LY KCG +  AR++FDE+  
Sbjct: 19  HTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSS 78

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GR 283
           RD+V W  +++ Y+ +     A+ +   M   G+K + FT +SL+ +   +GS+ +  GR
Sbjct: 79  RDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+HGL ++  +D +V V+ +++DMYA+  ++++A  +FD M +KN VSWN ++ G+ + G
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
            G +A  L  +ML+ +  P   T +S+L +C S+    + + VHA  IK G +    + N
Sbjct: 199 QGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGN 258

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            L++ Y+K GSI  A + F  + + D+V+W S++  Y+ HGL K +++ FE+ML   + P
Sbjct: 259 TLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAP 318

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           + I FL VL+ACSH GL+ EG  YF++M   Y++ P   HY  + DLLGR G L  A   
Sbjct: 319 NDITFLCVLTACSHAGLLDEGRHYFDMM-KKYNVEPQISHYVTMVDLLGRAGHLDRAIQF 377

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           ++ MPI+P +   GA +GAC++H ++ L  +AAE + EL+   P  + L+ N+YA    W
Sbjct: 378 ISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRW 437

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
            D A++RKMM+++   K P CSW+E+  E+H FV+ D +HPQ   ++ M
Sbjct: 438 NDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNM 486



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 222/406 (54%), Gaps = 12/406 (2%)

Query: 43  SVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQN 102
            ++  Q +N+    E  H+        LK       L +GK +H+ ++     + L +QN
Sbjct: 2   ELIRQQCKNNAGAREICHTL-------LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQN 54

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRL 160
            +L++Y KC       KLFDEM  R++VTW  LI+G    +   +       ML   ++ 
Sbjct: 55  TLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKP 114

Query: 161 DHITFNSLLRAC--VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           +  T  SLL+A   V + D+  GR+LH   L+ G+  N +VS A++D+Y +C  +E+A+ 
Sbjct: 115 NQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQL 174

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +FD ++ ++ V WN +++ YA    GD A  +F+ M  E +K  +FT+SS++ +C ++GS
Sbjct: 175 IFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGS 234

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
            + G+ +H L+IK    L   V  +L+DMYAK+G+I+DA +VFD +  ++VVSWN+M+ G
Sbjct: 235 LEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTG 294

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           + Q+G G+ A++   +ML+    P+++T   +L++C    +  E R       K  V+  
Sbjct: 295 YSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQ 354

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           +S    +++   + G +  A+Q    +  +P    W +++GA   H
Sbjct: 355 ISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH 400


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 283/525 (53%), Gaps = 35/525 (6%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           +FD    +N+V +N +I   +N    V     F+ ML      DH TF  +L+AC   D+
Sbjct: 93  IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           + VG ++H  I+KVG   N F+ +ALV +YGKCG + +AR+V D++  RD+V WN MV+ 
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           YA +   D A+ +   M    +  D  T +SL                            
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHDAGTMASL---------------------------- 244

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
                S V  Y    N+     +F+ MT KN++SWN M+  +  N    EAV L   M +
Sbjct: 245 -----SPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEE 299

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               PD VT+AS+L +CG LS     R++H Y  K  ++  L +ENAL++ Y+KCG +  
Sbjct: 300 CGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEE 359

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F  ++  D+V+WTS++ AY   G   +++ +F KML     PDSIAF+ VLSACSH
Sbjct: 360 ARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSH 419

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GL+ +G  YF +M   Y I+P  EH+ C+ DL GR G + EAY  +  MP+EP     G
Sbjct: 420 TGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWG 479

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           A + AC+VH  + +   AA+ L +L P +   Y L+SN+YA    W DV  +R  M+   
Sbjct: 480 ALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIG 539

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
             KVPG S +E+ G++HTF++ D+ HPQA ++Y  L  + G M+E
Sbjct: 540 IKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKE 584



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 194/417 (46%), Gaps = 43/417 (10%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +   LK  +    L+ G Q+H  I+K+GL   L + N ++ +Y KC    +  K+ D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           +M  R++V+WN++++G    G                     F+  L  C + D      
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSG--------------------QFDDALEICKEMDS----- 231

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
                 L +        S + V  Y     V+    +F+ +  ++L+ WNVM++ Y  N 
Sbjct: 232 ------LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNS 285

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           + + A+++F  M   GMK D  T +SL+ +CG L +  LGR++H  + K +   ++L+  
Sbjct: 286 MPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLEN 345

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK G +++A  VFD M  ++VVSW +M+  +G++G G +AV L   ML     P
Sbjct: 346 ALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNP 405

Query: 363 DEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           D +   S+LS+C    +  + R         Y I   ++ F      +++ + + G +  
Sbjct: 406 DSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA----CMVDLFGRAGEVEE 461

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           A      +  EP+   W +++ A   H  SK  I +    L   + P    +  +LS
Sbjct: 462 AYSFIKQMPMEPNERVWGALLSACRVH--SKMDIGLVAADLLFQLAPKQSGYYVLLS 516


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 199/616 (32%), Positives = 326/616 (52%), Gaps = 16/616 (2%)

Query: 28   QNQTTTITNAQKH-------DRSVLSSQLRNSGTIHESTHSAHSF-YSQALKVSAKFGFL 79
            +N  + +T  Q H       + S L  +LR  G      H  + F  +  LK+      L
Sbjct: 494  RNMVSFVTLVQGHALRGEFEEASALFQRLRWEG------HEVNQFVLTTVLKLVVAMDTL 547

Query: 80   QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS-- 137
                 +H+   KLG      + + ++  Y  C    D  ++FD +  ++ V W  ++S  
Sbjct: 548  GLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCY 607

Query: 138  GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
               +C  N    F +M +   +L+     S+LRA V    + +G+ +H+  +K  +    
Sbjct: 608  SENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTER 667

Query: 198  FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
             V  AL+D+Y KCG +EDAR  F+ V   D++LW++M+S YA     + A  +F  M   
Sbjct: 668  HVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRS 727

Query: 258  GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
             +  + F+ SS++ +C  +    LG+QIH   IK   + ++ V  +L+D+YAK  +++ +
Sbjct: 728  SVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESS 787

Query: 318  CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
              +F  +   N VSWNT++VG+ ++G G  A+ + R+M   S    +VT +S+L +C S 
Sbjct: 788  LEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACAST 847

Query: 378  SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
            +      QVH    K+   +   + N+LI++Y+KCG I  A + F ++KE DLV+W +II
Sbjct: 848  ASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAII 907

Query: 438  GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
              YA HG +  + E+F+ M  ++++ + I F+ +LS C   GLVS+GL  F+ M  D+ I
Sbjct: 908  SGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGI 967

Query: 498  LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
             P  EHYTC+  LLGR G L +A + +  +P  P +    A + +C VH ++ L +++AE
Sbjct: 968  EPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAE 1027

Query: 558  KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            K+LE+EP     Y L+SN+Y++      VA  RK MR+    K PG SW+EI GE+H F 
Sbjct: 1028 KVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFS 1087

Query: 618  SSDRSHPQAVHMYAML 633
                 HP    + AML
Sbjct: 1088 VGSEDHPCMRVINAML 1103



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/492 (29%), Positives = 262/492 (53%), Gaps = 6/492 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDE 123
           Y++ L+     G  + G+ +H H+++ G   +L L   N +L++Y K   F    ++FD 
Sbjct: 431 YARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDG 490

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +  RN+V++ TL+ G    G     +  F+R+  +   ++     ++L+  V  D + + 
Sbjct: 491 LPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLA 550

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +H+   K+G   N FV SAL+D Y  CG V DARRVFD ++ +D V W  MVSCY+ N
Sbjct: 551 WGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEN 610

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              +  + +F+ MR+   K + F  +S++ +   L S  LG+ IH   +K  +D +  V 
Sbjct: 611 DCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVY 670

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +L+DMYAK GNI+DA   F+ +T  +V+ W+ M+  + Q     +A +L   M++ S  
Sbjct: 671 GALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVS 730

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+E +L+S+L +C ++ +    +Q+H +AIK G ++ L + NALI+ Y+KC  +  +L+ 
Sbjct: 731 PNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEI 790

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F S+++ + V+W +II  Y+  G  + ++ VF +M + +V    + +  VL AC+    +
Sbjct: 791 FSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASI 850

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           +  +   + +I       D+     L D   + G + +A ++  ++  E    +  A I 
Sbjct: 851 NH-VGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLK-ECDLVSWNAIIS 908

Query: 542 ACKVHGSIGLAK 553
              VHG   +A+
Sbjct: 909 GYAVHGQAAMAQ 920



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 183/372 (49%), Gaps = 7/372 (1%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDAR 217
           +D   +  LL+ CV   D   GR +H  +++ G    L+ F ++ L+++Y K G    A 
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           RVFD +  R++V +  +V  +AL    + A A+F  +R EG + + F  ++++     + 
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           +  L   +H    K   D +  V ++L+D Y+  G + DA RVFDG+  K+ V+W  MV 
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            + +N      +++   M       +   L S+L +   LS     + +HA ++K     
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
              +  AL++ Y+KCG+I  A   F  V   D++ W+ +I  YA    ++++ E+F +M+
Sbjct: 666 ERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMM 725

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVG 515
             +V P+  +   VL AC++  L+  G +  N  I   H   +SE +    L DL  +  
Sbjct: 726 RSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGH---ESELFVGNALIDLYAKCS 782

Query: 516 LLVEAYDLLASM 527
            +  + ++ +S+
Sbjct: 783 DMESSLEIFSSL 794


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 179/570 (31%), Positives = 313/570 (54%), Gaps = 3/570 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    K+    G L  GK  H+ + ++   NK  + N +L +Y  CK+F   E+ FD++ 
Sbjct: 95  YEYLFKMCGTLGALSDGKLFHNRLQRMANSNKF-IDNCILKMYCDCKSFTSAERFFDKIV 153

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++ +W+T+IS     G        F RML   +  +   F++L+ +      +++G++
Sbjct: 154 DQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQ 213

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS ++++GF  N  + + + ++Y KCG+++ A    +++  ++ V    ++  Y     
Sbjct: 214 IHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAAR 273

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  M  EG++ D F FS ++ +C  LG    G+QIH   IK   + +V V T 
Sbjct: 274 NRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTP 333

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVD Y K    + A + F+ +   N  SW+ ++ G+ Q+G    A+++ + +       +
Sbjct: 334 LVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLN 393

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
                +I  +C ++S      Q+HA AIK G+ A+LS E+A+I+ YSKCG +  A Q F 
Sbjct: 394 SFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFL 453

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           ++ +PD V WT+II A+A+HG + E++ +F++M    VRP+++ F+ +L+ACSH GLV E
Sbjct: 454 TIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKE 513

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +  + M  +Y + P  +HY C+ D+  R GLL EA +++ S+P EP   +  + +G C
Sbjct: 514 GKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGC 573

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
             H ++ +   AA+ +  L+P     Y ++ N+YA    W + A+ RKMM +    K   
Sbjct: 574 WSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVS 633

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           CSWI + G++H FV  DR HPQ   +Y+ L
Sbjct: 634 CSWIIVKGKVHRFVVGDRHHPQTEQIYSKL 663



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           ++  L   CGTLG+   G+  H  + + + + +  +   ++ MY    +   A R FD +
Sbjct: 94  SYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSAERFFDKI 152

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             +++ SW+T++  + + G   EAV+L   ML     P+    ++++ S    S+    +
Sbjct: 153 VDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGK 212

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q+H+  I+ G  A +SIE  + N Y KCG + GA      +   + V  T ++  Y    
Sbjct: 213 QIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAA 272

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            +++++ +F KM+S  V  D   F  +L AC+  G +  G
Sbjct: 273 RNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTG 312


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 187/561 (33%), Positives = 318/561 (56%), Gaps = 8/561 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-- 136
           +QQ KQ+H+  +   L     +  ++++ ++     D   ++F++ +  +   +N +I  
Sbjct: 19  IQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRA 78

Query: 137 --SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
             S    C   ++ Y +     N+  D  T+  + +AC     +E G+ +H  I+++G+ 
Sbjct: 79  YSSSQTPCVA-ISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYE 137

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           L+ F+ S+L++ Y  CG + +A++VFDE   +D+V WN +++ YA   +   +  VF  M
Sbjct: 138 LDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEM 197

Query: 255 -RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLVATSLVDMYAKNG 312
             ++ ++ +  T   L+ +C    + KLGR IHG ++K     + V +  +L+++Y K G
Sbjct: 198 VEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCG 257

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            +D A ++FD +  KN V WN+++ G+ Q G   E ++LLR+M   +  PD  T++ +LS
Sbjct: 258 YLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLS 317

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C  +        VH +A K G+     I  ALI+ Y+KCG I  A + F  + E ++ T
Sbjct: 318 ACAQMGAFNLGNWVHRFAEKKGIWDVF-IGTALIDMYAKCGFIGAARKVFDQMNERNVAT 376

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +I+  YA HG ++ +IE+F +M     RPDSI FL VL AC+H GLV  G +YF+LM+
Sbjct: 377 WNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLML 436

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             Y I P  EHY C+ DLLGR GLL EA +L+  M +EP     GA + AC +HG+I + 
Sbjct: 437 QYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIG 496

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           +WAA  +++L      +Y +++N+YAS + +  V  +R+MM +    K  GCS IEI   
Sbjct: 497 EWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDV 556

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
           +H FV +D+ HP++  +Y++L
Sbjct: 557 VHEFVVADKMHPRSEEIYSVL 577



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 220/411 (53%), Gaps = 19/411 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    K  A    +++GK++H  I+++G      LQ+ +L+ Y+ C    + +++FDE  
Sbjct: 108 YPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFD 167

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRML-LDNVRLDHITFNSLLRACVQADDIEVGR 182
            +++V WN LI+G    G  +  +  F+ M+ +  VR +  T   L+ AC+++ ++++GR
Sbjct: 168 AKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGR 227

Query: 183 RLHSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            +H +++K +       + +AL++LY KCG+++ AR++FDE+  ++ V+WN ++  Y   
Sbjct: 228 AIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQI 287

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              +  I +   M L  +K D FT S ++++C  +G+  LG  +H    K+    DV + 
Sbjct: 288 GSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIG 346

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           T+L+DMYAK G I  A +VFD M  +NV +WN ++ G+  +G    A++L  +M +    
Sbjct: 347 TALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGAR 406

Query: 362 PDEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           PD +T  ++L +C    +    +Q     +  Y I   V+ +      +++   + G + 
Sbjct: 407 PDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHY----GCMVDLLGRAGLLQ 462

Query: 417 GALQCFG-SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
            A +     V EP++V W +++ A + HG    +IE+ E    H ++ +++
Sbjct: 463 EARELIKMMVVEPNVVVWGALLSACSIHG----NIEIGEWAAHHMIKLNAM 509



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 199/407 (48%), Gaps = 22/407 (5%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           +L+  C    +I+  +++H+  +        F+ + +++ +     ++ A +VF++    
Sbjct: 11  ALIETCT---NIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEP 67

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           D  ++N M+  Y+ +     AI+++N MR  + + GD +T+  +  +C +  + + G+++
Sbjct: 68  DGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEV 127

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           HG++++  ++LD  + +SL++ Y   G I +A +VFD   AK+VV WN ++ G+ + G  
Sbjct: 128 HGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMV 187

Query: 346 REAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV-QAFLSIEN 403
            ++  + ++M++     P+E T+  ++ +C         R +H Y +K+ V +  + +E 
Sbjct: 188 LDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEA 247

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALIN Y KCG + GA + F  + E + V W S+I  Y   G   E IE+  +M    ++P
Sbjct: 248 ALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKP 307

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNL-----MISDYHILPDSEHYTCLTDLLGRVGLLV 518
           D      VLSAC+  G        FNL       ++   + D    T L D+  + G + 
Sbjct: 308 DRFTVSGVLSACAQMGA-------FNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIG 360

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
            A  +   M  E    T  A +     HG    A+ A E   E+  S
Sbjct: 361 AARKVFDQMN-ERNVATWNAILSGYASHGQ---AESAIELFSEMRES 403


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 307/562 (54%), Gaps = 5/562 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVR 127
           LK  +    LQ G+ +H+H   LGL   L +   +LH+Y KC      + LF+ +  + R
Sbjct: 114 LKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR 173

Query: 128 NIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +IV WN +I+                +M    V  +  T  S+L    QA+ +  G+ +H
Sbjct: 174 DIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIH 233

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           ++ ++  F  N  + +AL+D+Y KC  +  AR++F+ V  ++ V W+ M+  Y L+    
Sbjct: 234 AYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSIS 293

Query: 246 GAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
            A+A+++ ++ + G+     T ++++ +C  L   K G+++H  +IK   DLD  V  SL
Sbjct: 294 DALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSL 353

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MYAK G +D+A    D M AK+ VS++ ++ G  QNG   +A+ + R M      P  
Sbjct: 354 ISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYL 413

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T+ ++L +C  L+        H Y +  G     SI NA+I+ YSKCG I  + + F  
Sbjct: 414 ETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDR 473

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++  D+++W ++I  Y  HGL  E++ +F+++ +  ++PD +  + VLSACSH GLV+EG
Sbjct: 474 MQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEG 533

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
             +F+ M  +++I P   HY C+ DLL R G L EAY  +  MP  P     GA + AC+
Sbjct: 534 KYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACR 593

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
            H +I + +  ++K+  L P    N+ L+SN+Y+S   W D A +R + R +   K PGC
Sbjct: 594 THKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGC 653

Query: 605 SWIEIAGEIHTFVSSDRSHPQA 626
           SW+EI+G IH F+   +SHPQ+
Sbjct: 654 SWVEISGVIHVFIGGHQSHPQS 675



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 196/374 (52%), Gaps = 13/374 (3%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY------FRRMLLDNVRLDHITFNSLLRACV 173
           +FD++   ++V WN +I      G    P+      +  ML   V   + TF  LL+AC 
Sbjct: 63  VFDQIPKPSVVLWNMMIRTYAWSG----PFQQSIYLYLHMLQLGVTPTNFTFPFLLKACS 118

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRDLVLW 231
               +++GR +H+    +G  ++ +VS+AL+ +Y KCG +  A+ +F+ +    RD+V W
Sbjct: 119 SLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAW 178

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N M++ ++ + L    I     M+  G+  +  T  S++ + G   +   G+ IH   I+
Sbjct: 179 NAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIR 238

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
             F  +V++ T+L+DMYAK   +  A ++F+ +  KN V W+ M+ G+  +    +A+ L
Sbjct: 239 NFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALAL 298

Query: 352 LRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
             DML      P   TLA++L +C  L+     +++H + IK+G+    ++ N+LI+ Y+
Sbjct: 299 YDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYA 358

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  A+     +   D V++++II     +G +++++ +F +M S  + P     + 
Sbjct: 359 KCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIA 418

Query: 471 VLSACSHGGLVSEG 484
           +L ACSH   +  G
Sbjct: 419 LLPACSHLAALQHG 432



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 169/338 (50%), Gaps = 5/338 (1%)

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++ AR VFD++    +VLWN+M+  YA +     +I ++  M   G+    FTF  L+ +
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVV 330
           C +L + +LGR IH         +D+ V+T+L+ MYAK G++  A  +F+ ++   +++V
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           +WN M+  F  +    + +  +  M Q    P+  TL SIL + G  +   + + +HAY 
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           I+N     + ++ AL++ Y+KC  +  A + F +V + + V W+++IG Y  H    +++
Sbjct: 237 IRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDAL 296

Query: 451 EVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
            +++ ML  + + P       +L AC+    +  G +    MI     L D+     L  
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDL-DTTVGNSLIS 355

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +  + G++  A   L  M I   + +  A I  C  +G
Sbjct: 356 MYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNG 392



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 7/295 (2%)

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           AT L   +     I  A  VFD +   +VV WN M+  +  +G  ++++ L   MLQ   
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P   T   +L +C SL      R +H +A   G+   L +  AL++ Y+KCG +  A  
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 421 CFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            F S+  ++ D+V W ++I A++FH L  ++I    +M    V P+S   + +L      
Sbjct: 164 LFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQA 223

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT-LG 537
             + +G       I ++    +    T L D+  +  LL  A  +  +  +  ++D    
Sbjct: 224 NALHQGKAIHAYYIRNF-FFDNVVLQTALLDMYAKCHLLFYARKIFNT--VNKKNDVCWS 280

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           A IG   +H SI  A    + +L +    P    L + + A  +   D+ R +K+
Sbjct: 281 AMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQL-TDLKRGKKL 334


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 172/428 (40%), Positives = 268/428 (62%), Gaps = 5/428 (1%)

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F+ + L+++Y K G + DA+ VFD++  R++V W  M+S Y+   L D A+    LM  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G++ + FT+SS++ +C  L +    RQ+H  +IK   D DV V ++L+D+Y++ G +++A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            RVFD M   ++V W++++ GF QN DG EA++L + M +  F   + TL S+L +C  L
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           ++    RQVH + +K      L+  NAL++ Y KCGS+  A   F  + E D+++W+++I
Sbjct: 178 ALLELGRQVHVHVLKYDQDLILN--NALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMI 235

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
              A +G SKE++++FE M    ++P+ +  + VL ACSH GLV EGL YF+ M   + I
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGI 295

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLLGR G L EA DL+  M  EP + T  A + AC+VH ++ +A  AA+
Sbjct: 296 DPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAK 355

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           ++L L+P     Y L+SN+YA+ + W DVA +R+ M +    K PGCSWIE++ +IH F+
Sbjct: 356 QILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFI 415

Query: 618 SSDRSHPQ 625
             DRSHPQ
Sbjct: 416 LGDRSHPQ 423



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 200/359 (55%), Gaps = 31/359 (8%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDN 157
           L N ++++YVK     D + +FD+M  RN+V+W T+IS       N     +   ML + 
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           VR +  T++S+LRAC   D +   R+LH  I+K+G   + FV SAL+D+Y + G +E+A 
Sbjct: 62  VRPNMFTYSSVLRAC---DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENAL 118

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           RVFDE++  DLV+W+ +++ +A N  GD A+ +F  M+  G      T +S++ +C  L 
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             +LGRQ+H  V+K  +D D+++  +L+DMY K G+++DA  VF  M  K+V+SW+TM+ 
Sbjct: 179 LLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIA 236

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G  QNG  +EA+KL   M      P+ VT+  +L +C            HA  ++ G+  
Sbjct: 237 GLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACS-----------HAGLVEEGLYY 285

Query: 398 FLSIEN------------ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           F S++              +I+   + G ++ A+     ++ EPD VTW +++ A   H
Sbjct: 286 FHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVH 344



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 140/260 (53%), Gaps = 10/260 (3%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +QLH  I+K+GL + + +++ ++ VY +    ++  ++FDEM   ++V W+++I+G    
Sbjct: 83  RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142

Query: 143 --GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
             G      F+RM          T  S+LRAC     +E+GR++H  +LK  +  +  ++
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILN 200

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+D+Y KCG +EDA  VF  ++ +D++ W+ M++  A N     A+ +F  M++ G+K
Sbjct: 201 NALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIK 260

Query: 261 GDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDA 317
            +Y T   ++ +C   G  + G    H +  K+ F +D        ++D+  + G + +A
Sbjct: 261 PNYVTIVGVLFACSHAGLVEEGLYYFHSM--KELFGIDPGREHYGCMIDLLGRAGRLSEA 318

Query: 318 CRVFDGMTAK-NVVSWNTMV 336
             + + M  + + V+W  ++
Sbjct: 319 VDLINEMECEPDAVTWRALL 338



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 114/233 (48%), Gaps = 17/233 (7%)

Query: 45  LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV 104
           L  +++ +G + + T       +  L+       L+ G+Q+H H++K      L L N +
Sbjct: 151 LFKRMKRAGFLAQQTT-----LTSVLRACTGLALLELGRQVHVHVLKYD--QDLILNNAL 203

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDH 162
           L +Y KC + +D   +F  M  +++++W+T+I+G+   G        F  M +  ++ ++
Sbjct: 204 LDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNY 263

Query: 163 ITFNSLLRACVQADDIEVG-RRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRV 219
           +T   +L AC  A  +E G    HS  +K  FG++        ++DL G+ G + +A  +
Sbjct: 264 VTIVGVLFACSHAGLVEEGLYYFHS--MKELFGIDPGREHYGCMIDLLGRAGRLSEAVDL 321

Query: 220 FDEVLCR-DLVLWNVMVSCYALNCLGDGAI-AVFNLMRLEGMK-GDYFTFSSL 269
            +E+ C  D V W  +++   ++   D AI A   ++RL+    G Y   S++
Sbjct: 322 INEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNI 374


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 307/566 (54%), Gaps = 2/566 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G LQ+GKQLHS+++K G+      +  +L +YVKC   +    +F+     N+
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 130 VTWNTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN ++   G I+        F +M    +  +  T+  +LR C     IE+G ++HS 
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K GF  + +VS  L+D+Y K   ++ AR++ + +  RD+V W  M++ Y  +   + A
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +A F  M+  G+  D    +S  ++C  + + + G QIH  V    +  D+ +  +LV++
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNL 491

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA+ G  ++A  +F  +  K+ ++WN ++ GFGQ+    +A+ +   M Q     +  T 
Sbjct: 492 YARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTF 551

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S +S+  +L+   + +QVH  A+K G  +   + NALI+ Y KCGSI  A   F  +  
Sbjct: 552 ISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL 611

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            + V+W +II + + HG   E++++F++M    ++P+ + F+ VL+ACSH GLV EGL Y
Sbjct: 612 RNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSY 671

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  M + Y + P  +HY C+ D+LGR G L  A   +  MPI   +      + ACKVH 
Sbjct: 672 FKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHK 731

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I + + AA+ LLELEP    +Y L+SN YA    W +  ++RKMM+D    K PG SWI
Sbjct: 732 NIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWI 791

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAML 633
           E+   +H F   DR HP +  +Y  L
Sbjct: 792 EVKNAVHAFFVGDRLHPLSDQIYKFL 817



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 243/483 (50%), Gaps = 4/483 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K     QG+ +H+ + K   C++  + N ++ +Y+   +F   E++F +M  
Sbjct: 148 SSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + VT+NTLISG   CG        F  M L  +R D +T  SLL AC    D++ G++L
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS++LK G   +     +L+DLY KCG +E A  +F+     ++VLWN+M+  Y      
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             +  +F  M+  G+  + FT+  ++ +C   G  +LG QIH L IK  F+ D+ V+  L
Sbjct: 328 AKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K   +D A ++ + +  ++VVSW +M+ G+ Q+    EA+   ++M      PD 
Sbjct: 388 IDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDN 447

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           + LAS  S+C  +    +  Q+HA    +G  A +SI N L+N Y++CG    A   F  
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFRE 507

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D +TW  +I  +    L ++++ VF KM     + +   F+  +SA ++   + +G
Sbjct: 508 IDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQG 567

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            +     +   H   ++E    L  L G+ G + +A  + + M +     +    I +C 
Sbjct: 568 KQVHGRAVKTGHT-SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV-SWNTIITSCS 625

Query: 545 VHG 547
            HG
Sbjct: 626 QHG 628



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 224/444 (50%), Gaps = 5/444 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           ++H+  +  GL     + N ++ +Y K        ++F E+  R+ V+W  ++SG    G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 144 GNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                +  + +M    V       +S+L AC +      GR +H+ + K  F    FV +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+ LY   G  + A RVF ++L  D V +N ++S +A    G+ A+ +F+ M+L G++ 
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T +SL+ +C ++G  + G+Q+H  ++K     D +   SL+D+Y K G+I+ A  +F
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +     NVV WN M+V +GQ  D  ++ ++   M      P++ T   IL +C       
Sbjct: 304 NLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIE 363

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+ +IKNG ++ + +   LI+ YSK   +  A +    +++ D+V+WTS+I  Y 
Sbjct: 364 LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYV 423

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   +E++  F++M    V PD+I      SAC+    + +GL+ +  + +S Y    D
Sbjct: 424 QHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AAD 481

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLL 524
              +  L +L  R G   EA+ L 
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLF 505



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  A+   A    ++QGKQ+H   +K G  ++  + N ++ +Y KC + +D + +F EM 
Sbjct: 551 FISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMS 610

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN V+WNT+I+     G  +     F +M  + ++ + +TF  +L AC     +E G  
Sbjct: 611 LRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLS 670

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYA 239
               +  V +GLN      + +VD+ G+ G ++ ARR  DE+ +  + ++W  ++S C  
Sbjct: 671 YFKSMSNV-YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKV 729

Query: 240 LNCLGDGAIAVFNLMRLE 257
              +  G +A  +L+ LE
Sbjct: 730 HKNIEIGELAAKHLLELE 747


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 191/592 (32%), Positives = 318/592 (53%), Gaps = 13/592 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E      S+Y   L+   K   + + + +H+HI+K G    L++   +++VY KC A 
Sbjct: 66  IKEEKKIEPSYYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAM 125

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGII-NCGGNVT-PYFRRMLLDNVRLDHITFNSLLRAC 172
            +  K+FD +  RN+V W  L++G + N   N+    F+ ML       + T    L AC
Sbjct: 126 GNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNAC 185

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
              + I++G++LH+F++K     +  + +AL  LY K G ++ +  VF  +  ++++ W 
Sbjct: 186 SAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVISWT 245

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            ++S    N      +  FN M LE +K + FT +++++ C    +  LGR +H L IK 
Sbjct: 246 AVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKL 305

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-------- 344
            +  ++ +  S++ +Y K G++D+A  +F  M + N+V+WN M+ G  Q  D        
Sbjct: 306 GYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSA 365

Query: 345 ---GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
              G EA+ +  ++ +    PD  TL+S+L+ C  LS   +  Q+HA  IK+G  + + +
Sbjct: 366 QRSGIEALSIFLELNRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVV 425

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
             AL+N YSKCGSI  A + F  +    L++WT++I   A HG S++++++FE M    V
Sbjct: 426 GTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGV 485

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           RP+ I F+ VL+AC H G+V E L YF +M  +Y I P  +HY CL  +  ++  L EA+
Sbjct: 486 RPNQITFVGVLAACCHSGMVDEALGYFEMMQKEYRIKPVMDHYGCLIAMFVKLRRLDEAF 545

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           D++  M  EP        I  C+  G   L  +AAE+LL+L+      Y  + N+Y S +
Sbjct: 546 DIINKMDFEPSEFIWSILIAGCRNLGKQELGFYAAEQLLKLKLKDTETYVTLLNMYISAK 605

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            W DV+R+RK+M++    K    SWI I  +IH+F ++ R HP    MY +L
Sbjct: 606 RWQDVSRVRKLMKEEKLGKFNDWSWITIKEKIHSFKTTGRLHPHNAKMYELL 657


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 282/466 (60%), Gaps = 6/466 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D IT++ L++ C+    ++  R +H  +   G+    F+ + L+++Y K G +++AR +F
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  R++V W  M+S Y+ + L   A+    LM  EG++ + +T+SS++ +C  L +  
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL- 133

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
             RQ+HG ++K   + DV V ++L+D Y+K G   DA  VF+ M   ++V WN+++ GF 
Sbjct: 134 --RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QN DG E + L + M +  F  D+ TL S+L +C  L++    RQVH + +K      L+
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILN 251

Query: 401 IENALINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
             NAL++ Y KCGS+  A   F  +  E D+++W+++I   A +G S +++++FE M S 
Sbjct: 252 --NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
             +P+ I  L VL ACSH GLV++G  YF  M   + I P  EHY C+ DLLGR G L E
Sbjct: 310 GPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDE 369

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A  L+  M  EP + T    +GAC+VH ++ LA +AA+++L+L+P+    Y L+SN+YA+
Sbjct: 370 AVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYAN 429

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
            + W DVA +R+ MR     K PGCSWIE++ ++H F+  D SHP+
Sbjct: 430 SQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPR 475



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 215/407 (52%), Gaps = 33/407 (8%)

Query: 54  TIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
            +H +  SA +  YS+ +K     G +QQ + +H H+   G   K  L N ++++YVK  
Sbjct: 6   AMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFG 65

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLR 170
             D+   LFDEM  RN+V+W T+IS   N   N     +   ML + VR +  T++S+LR
Sbjct: 66  LLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLR 125

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           AC   D +   R+LH  ILKVG   + FV SAL+D Y K G   DA  VF+E++  DLV+
Sbjct: 126 AC---DGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVV 182

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN ++  +A N  GD  + ++  M+      D  T +S++ +C  L   +LGRQ+H  V+
Sbjct: 183 WNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL 242

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG-MTAKNVVSWNTMVVGFGQNGDGREAV 349
           K  +D D+++  +L+DMY K G+++DA  +F   MT K+V+SW+TM+ G  QNG   +A+
Sbjct: 243 K--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------ 403
           KL   M      P+ +T+  +L +C            HA  + +G   F S++       
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACS-----------HAGLVNDGWYYFQSMKEHFGIDP 349

Query: 404 ------ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
                  +I+   + G +  A++    +  EPD VTW  ++GA   H
Sbjct: 350 GREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVH 396



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M    +  D  T+S L+  C   G+ +  R +H  V    ++    +  +L++MY K G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +D+A  +FD M  +NVVSW TM+  +  +    +A+  L  ML+    P+  T +S+L +
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C  L      RQ+H   +K G+++ + + +ALI+ YSK G    AL  F  +   DLV W
Sbjct: 127 CDGL---LNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVW 183

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMI 492
            SIIG +A +    E++ ++++M       D      VL AC+   L+  G + + +++ 
Sbjct: 184 NSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK 243

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            D  ++ ++     L D+  + G L +A  L   M  E    +    I     +G
Sbjct: 244 YDQDLILNN----ALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNG 294



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           +K +  M +     D +T + ++  C       + R VH +   NG +    + N LIN 
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y K G +  A   F  + + ++V+WT++I AY+   L+ ++++    ML   VRP+   +
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 469 LEVLSACS--------HGGLVSEGL 485
             VL AC         HG ++  GL
Sbjct: 121 SSVLRACDGLLNLRQLHGSILKVGL 145


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 209/625 (33%), Positives = 324/625 (51%), Gaps = 10/625 (1%)

Query: 43  SVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQN 102
           S L   L +S  I  S     SF+S  L  S     L Q   +H+ ++  GL     L  
Sbjct: 51  SSLPLPLDHSDYIPYSGFDFDSFFSSLLDHSVHKRHLNQ---IHAQLVVSGLVESGFLVT 107

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRL 160
           + ++            K+FDE    ++  WN +I G    N  G+    + RM    V  
Sbjct: 108 KFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNP 167

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T   +L+AC     +EVG+R+H  I ++GF  + FV + LV LY KCG VE AR VF
Sbjct: 168 DGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVF 227

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  R++V W  M+S Y  N L   A+ +F  MR   +K D+    S++ +   +   +
Sbjct: 228 EGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLE 287

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            G+ IHG V+K   + +  +  SL  MYAK G +  A   FD M   NV+ WN M+ G+ 
Sbjct: 288 QGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYA 347

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           +NG   EAV L ++M+  +   D +T+ S + +C  +      + +  Y  K   +  + 
Sbjct: 348 KNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVF 407

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  ALI+ ++KCGS+  A + F    + D+V W+++I  Y  HG  +++I++F  M    
Sbjct: 408 VNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAG 467

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           V P+ + F+ +L+AC+H GLV EG   F+ M   Y I    +HY C+ DLLGR G L EA
Sbjct: 468 VCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEA 526

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           YD + +MPIEP     GA +GACK++  + L ++AAE+L  L+P    +Y  +SN+YAS 
Sbjct: 527 YDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASS 586

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
           R W  VA++R +MR+    K  G S IEI G++  F   D+SHP+   ++  L ++   +
Sbjct: 587 RLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRL 646

Query: 641 EENNVSGHCNV----LDKEMDECTL 661
           +E     H       L++E  E TL
Sbjct: 647 KEAGFIPHIESVLHDLNQEEKEETL 671


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 208/649 (32%), Positives = 345/649 (53%), Gaps = 21/649 (3%)

Query: 1   MLSRCPAPPIFTVHF-----KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTI 55
           M  RC AP    V F     + P+S+        Q +   +A      + SS LR SGT+
Sbjct: 91  MYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAM----GLFSSMLR-SGTM 145

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            +           A+   ++ G L  G+Q+H+  +K    + L +QN ++ +Y K  +  
Sbjct: 146 PDQFA-----LGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVG 200

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR-LDHITFNSLLRAC 172
           D   LF+ +R +++++W ++I+G+   G  +     FR M+ + V   +   F S+ RAC
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 173 -VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
            V  + +E G ++H   +K     N +   +L D+Y +C  ++ AR+VF  +   DLV W
Sbjct: 261 SVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSW 320

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +++ ++   L   A+ +F+ MR  G++ D  T  +L+ +C    +   GR IH  ++K
Sbjct: 321 NSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVK 380

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                DV+V+ SL+ MYA+  +   A  VF     ++VV+WN+++    Q+    +  KL
Sbjct: 381 LGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKL 440

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              + +     D ++L ++LS+   L      +QVHAYA K G+     + N LI+ Y+K
Sbjct: 441 FSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAK 500

Query: 412 CGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           CGS+  A + F  +    D+ +W+S+I  YA  G +KE++++F +M +  V+P+ + F+ 
Sbjct: 501 CGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVG 560

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL+ACS  GLV EG  Y+++M  +Y I+P  EH +C+ DLL R G L EA   +  MP E
Sbjct: 561 VLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFE 620

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P        + A + H  + + K AAE +L ++PS    Y L+ N+YAS   W + ARL+
Sbjct: 621 PDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLK 680

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
           K MR +   K PG SWI++ GE+  F+  DRSHP++  +Y ML  V GL
Sbjct: 681 KDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEIYTML-EVIGL 728



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 202/410 (49%), Gaps = 9/410 (2%)

Query: 79  LQQGKQLHSHIMKLG-----LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           L QG+ +H H++        L +   L N ++ +Y +C A D    +FD M  RN V+W 
Sbjct: 58  LPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWA 117

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I+         +    F  ML      D     S + AC +  D+ +GR++H+  +K 
Sbjct: 118 AVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKW 177

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
             G +  V +ALV +Y K G V D   +F+ +  +DL+ W  +++  A       A+ +F
Sbjct: 178 ESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIF 237

Query: 252 NLMRLEGM-KGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
             M  EG+   + F F S+  +C  + +S + G QIHG+ +K   D +     SL DMYA
Sbjct: 238 REMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYA 297

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           +   +D A +VF  + + ++VSWN+++  F   G   EA+ L  +M      PD +T+ +
Sbjct: 298 RCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMA 357

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L +C       + R +H+Y +K G+   + + N+L++ Y++C   + A+  F    + D
Sbjct: 358 LLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRD 417

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           +VTW SI+ A   H   ++  ++F  +       D I+   VLSA +  G
Sbjct: 418 VVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELG 467



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 166/311 (53%), Gaps = 7/311 (2%)

Query: 172 CVQADDIEVGRRLHSFILKVG-----FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           C +   +  GR +H  +L           N  +S+ L+ +YG+CG  + AR VFD +L R
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           + V W  +++ +A N     A+ +F+ M   G   D F   S + +C  LG   LGRQ+H
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVH 171

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              IK     D++V  +LV MY+K+G++ D   +F+ +  K+++SW +++ G  Q G   
Sbjct: 172 AQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREM 231

Query: 347 EAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCE-TRQVHAYAIKNGVQAFLSIENA 404
           +A+++ R+M+ +G   P+E    S+  +C  +  S E   Q+H  ++K  +        +
Sbjct: 232 DALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCS 291

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L + Y++C  +  A + F  ++ PDLV+W S+I A++  GL  E++ +F +M    +RPD
Sbjct: 292 LSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPD 351

Query: 465 SIAFLEVLSAC 475
            I  + +L AC
Sbjct: 352 GITVMALLCAC 362



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 374 CGSLSISCETRQVHAYAIKNGVQ-AFLS----IENALINAYSKCGSIAGALQCFGSVKEP 428
           C  L    + R VH + + +  +  FL+    + N LI  Y +CG+   A   F  + + 
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + V+W ++I A+A +    +++ +F  ML     PD  A    + ACS  G
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELG 162


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 179/581 (30%), Positives = 328/581 (56%), Gaps = 3/581 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK  +    LQ G+ +H  +      N + +Q  V+ ++ KC + +D  ++F+EM 
Sbjct: 136 YPLVLKACSSLHALQLGRWVHETMHGKTKAN-VYVQCAVIDMFAKCGSVEDARRMFEEMP 194

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +W  LI G +  G  +     FR+M  + +  D +   S+L AC + + +++G  
Sbjct: 195 DRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMA 254

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           L    ++ GF  + +VS+A++D+Y KCG   +A RVF  ++  D+V W+ +++ Y+ NCL
Sbjct: 255 LQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCL 314

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  ++  M   G+  +    +S++ + G L   K G+++H  V+K+    DV+V ++
Sbjct: 315 YQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSA 374

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MYA  G+I +A  +F+  + K+++ WN+M+VG+   GD   A    R +      P+
Sbjct: 375 LIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPN 434

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +T+ SIL  C  +    + +++H Y  K+G+   +S+ N+LI+ YSKCG +    + F 
Sbjct: 435 FITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFK 494

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   ++ T+ ++I A   HG  ++ +  +E+M     RP+ + F+ +LSACSH GL+  
Sbjct: 495 QMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDR 554

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G   +N MI+DY I P+ EHY+C+ DL+GR G L  AY  +  MP+ P ++  G+ +GAC
Sbjct: 555 GWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGAC 614

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H  + L +  AE++L+L+     +Y L+SN+YAS + W D++++R M++D    K PG
Sbjct: 615 RLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPG 674

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
            SWI++   I+ F ++   HP    +   L ++  +M+  +
Sbjct: 675 SSWIQVGHCIYVFHATSAFHPAFAKIEETLNSLLLVMKSED 715



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 246/505 (48%), Gaps = 12/505 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKL-----SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           L + + LH+ ++ LG          S  +Q+++VYV   +       F  +  + I+ WN
Sbjct: 43  LHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWN 102

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            ++ G++  G       ++  ML   V  D+ T+  +L+AC     +++GR +H   +  
Sbjct: 103 AILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE-TMHG 161

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               N +V  A++D++ KCG VEDARR+F+E+  RDL  W  ++     N     A+ +F
Sbjct: 162 KTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLF 221

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             MR EG+  D    +S++ +CG L + KLG  +    ++  F+ D+ V+ +++DMY K 
Sbjct: 222 RKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKC 281

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G+  +A RVF  M   +VVSW+T++ G+ QN   +E+ KL   M+      + +   S+L
Sbjct: 282 GDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVL 341

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            + G L +  + +++H + +K G+ + + + +ALI  Y+ CGSI  A   F    + D++
Sbjct: 342 PALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIM 401

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            W S+I  Y   G  + +   F ++     RP+ I  + +L  C+  G + +G +  +  
Sbjct: 402 VWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQG-KEIHGY 460

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS--I 549
           ++   +  +      L D+  + G L     +   M +     T    I AC  HG    
Sbjct: 461 VTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVR-NVTTYNTMISACGSHGQGEK 519

Query: 550 GLAKWAAEKLLELEPSKPVNYALVS 574
           GLA +   K     P+K    +L+S
Sbjct: 520 GLAFYEQMKEEGNRPNKVTFISLLS 544



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 174/338 (51%), Gaps = 7/338 (2%)

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGF-----GLNCFVSSALVDLYGKCGFVEDA 216
           H T  S  R      ++   R LH+ +L +GF       +   +S LV++Y   G ++ A
Sbjct: 28  HFTVTSFHR-LKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHA 86

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
              F  +  + ++ WN ++           AI  ++ M   G+  D +T+  ++ +C +L
Sbjct: 87  FLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSL 146

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            + +LGR +H  +  ++   +V V  +++DM+AK G+++DA R+F+ M  +++ SW  ++
Sbjct: 147 HALQLGRWVHETMHGKT-KANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALI 205

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   NG+  EA+ L R M      PD V +ASIL +CG L        +   A+++G +
Sbjct: 206 CGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFE 265

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + L + NA+I+ Y KCG    A + F  +   D+V+W+++I  Y+ + L +ES +++  M
Sbjct: 266 SDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGM 325

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++  +  ++I    VL A     L+ +G    N ++ +
Sbjct: 326 INVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKE 363


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/555 (34%), Positives = 303/555 (54%), Gaps = 6/555 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK      G  LH+  +K G+ + + + N V+++Y KC       ++FDEM  RN+V+W+
Sbjct: 14  AKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWS 73

Query: 134 TLISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +ISG    G    P     L   +R+  +   F S++ AC     +  G ++H+  LK+
Sbjct: 74  AIISGYDQTG---QPLLALNLFSQMRIVPNEYVFASVISACASLTALSQGLQVHAQSLKL 130

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G     FVS+AL+ +Y KCG   DA  V + +   + V +N +++ +  N   +  I  F
Sbjct: 131 GCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAF 190

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
            +MR +G   D FTFS L+  C +      G Q+H  +IK + +    +   ++ MY+K 
Sbjct: 191 KVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKF 250

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASI 370
             I++A +VF  +  K+++SWNT+V       D   A+++ RDML   F  PD+ T A +
Sbjct: 251 NLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGV 310

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L++C  L+     +Q+H + I+      + + NAL+N Y+KCGSI  +   F    + +L
Sbjct: 311 LAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNL 370

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+W +II A+  HGL   ++E FEKM +  + PDS+ F+ +L+AC+H GLV EG  YFN 
Sbjct: 371 VSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNS 430

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M   Y I P+ EH++CL DLLGR G L EA + +  +P       LG+ + AC++HG + 
Sbjct: 431 MEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMV 490

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           + +  A +LL+L+P     Y L+SN+YAS+  W  VA   KM++ +   K PG S I++ 
Sbjct: 491 IGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLIDVM 550

Query: 611 GEIHTFVSSDRSHPQ 625
           G    F   D SH +
Sbjct: 551 GMFEKFTMGDLSHSR 565



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 197/388 (50%), Gaps = 13/388 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  +   A    L QG Q+H+  +KLG  +   + N ++ +Y+KC    D   + + M 
Sbjct: 104 FASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMS 163

Query: 126 VRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
             N V++N LI+G +    N  P      F+ M       D  TF+ LL  C   DD   
Sbjct: 164 EPNAVSYNALIAGFVE---NQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWR 220

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G +LH  ++K+    + F+ + ++ +Y K   +E+A +VF  +  +DL+ WN +V+    
Sbjct: 221 GMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCF 280

Query: 241 NCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
               + A+ VF +++ +  +K D FTF+ ++ +C  L S + G+QIHG +I+     DV 
Sbjct: 281 CKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVG 340

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V+ +LV+MYAK G+I ++  VF   + +N+VSWNT++  FG +G G  A++    M    
Sbjct: 341 VSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVG 400

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAG 417
             PD VT   +L++C    +  E  QV+  +++     F +IE+   LI+   + G +  
Sbjct: 401 IHPDSVTFVGLLTACNHAGL-VEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQE 459

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           A +    +    D +   S++ A   HG
Sbjct: 460 AEEYMEKLPFGHDPIILGSLLSACRLHG 487



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 177/359 (49%), Gaps = 5/359 (1%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           SLL  C +      G  LH+  LK G   +  VS+ +++LY KCG V  ARR+FDE+  R
Sbjct: 8   SLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDR 67

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           +LV W+ ++S Y        A+ +F+ MR+     + + F+S++++C +L +   G Q+H
Sbjct: 68  NLVSWSAIISGYDQTGQPLLALNLFSQMRI---VPNEYVFASVISACASLTALSQGLQVH 124

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              +K        V+ +L+ MY K G   DA  V + M+  N VS+N ++ GF +N    
Sbjct: 125 AQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPE 184

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           + ++  + M Q  F PD  T + +L  C S        Q+H   IK  ++    I N +I
Sbjct: 185 KGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVII 244

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDS 465
             YSK   I  A + FG +KE DL++W +++ A  F    + ++ VF  ML    V+PD 
Sbjct: 245 TMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDD 304

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
             F  VL+AC+    +  G +    +I       D      L ++  + G +  +YD+ 
Sbjct: 305 FTFAGVLAACAGLASIRHGKQIHGHLIRTRQ-YQDVGVSNALVNMYAKCGSIKNSYDVF 362



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            + S+L  C  +        +HA A+K G+ + + + N +IN YSKCG++  A + F  +
Sbjct: 5   AIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEM 64

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            + +LV+W++II  Y   G    ++ +F +M    + P+   F  V+SAC+    +S+GL
Sbjct: 65  SDRNLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQGL 121

Query: 486 R 486
           +
Sbjct: 122 Q 122


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 318/572 (55%), Gaps = 3/572 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           +F  + +  Q+H H++K+G  + L + N +L  Y K ++      LF  M  ++ VT+N 
Sbjct: 151 EFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNA 210

Query: 135 LISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           L++G    G N      F +M     R    TF ++L A +Q DDIE G+++HSF++K  
Sbjct: 211 LLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCN 270

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  N FV++AL+D Y K   + +AR++F E+   D + +NV+++C A N   + ++ +F 
Sbjct: 271 FVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFR 330

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            ++        F F++L++      + ++GRQIH   I      +VLV  SLVDMYAK  
Sbjct: 331 ELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCD 390

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
              +A R+F  +  ++ V W  ++ G+ Q G   + +KL  +M +     D  T ASIL 
Sbjct: 391 KFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILR 450

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C +L+     +Q+H+  I++G  + +   +AL++ Y+KCGSI  ALQ F  +   + V+
Sbjct: 451 ACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS 510

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I AYA +G    ++  FE+M+   ++P+S++FL +L ACSH GLV EGL+YFN M 
Sbjct: 511 WNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMT 570

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             Y + P  EHY  + D+L R G   EA  L+A MP EP      + + +C++H +  LA
Sbjct: 571 QVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELA 630

Query: 553 KWAAEKLLELEPSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
             AA++L  ++  +    Y  +SN+YA+   W  V +++K +R+    KVP  SW+EI  
Sbjct: 631 IKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQ 690

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643
           + H F ++D SHPQ   +   L  +   MEE 
Sbjct: 691 KTHVFSANDTSHPQTKEITRKLDELEKQMEEQ 722



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 232/469 (49%), Gaps = 8/469 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR 159
           N ++  Y+K         LFD M  R++VTW  LI G       +  +  F  M    + 
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            DHIT  +LL    + + +    ++H  ++KVG+     V ++L+D Y K   +  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  +  +D V +N +++ Y+       AI +F  M+  G +   FTF++++ +   +   
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDI 256

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           + G+Q+H  V+K +F  +V VA +L+D Y+K+  I +A ++F  M   + +S+N ++   
Sbjct: 257 EFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCC 316

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILS-SCGSLSISCETRQVHAYAIKNGVQAF 398
             NG   E+++L R++    F   +   A++LS +  SL++    RQ+H+ AI     + 
Sbjct: 317 AWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEM-GRQIHSQAIVTDAISE 375

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + N+L++ Y+KC     A + F  +     V WT++I  Y   GL ++ +++F +M  
Sbjct: 376 VLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHR 435

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             +  DS  +  +L AC++   ++ G +  + +I     L +    + L D+  + G + 
Sbjct: 436 AKIGADSATYASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIK 494

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE--LEPS 565
           EA  +   MP+   S +  A I A   +G  G A  + E+++   L+P+
Sbjct: 495 EALQMFQEMPVR-NSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPN 542



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 2/253 (0%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +V+   +++  Y K+GN+  A  +FD M  ++VV+W  ++ G+ Q+    EA  L  DM 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    PD +TLA++LS         E  QVH + +K G  + L + N+L+++Y K  S+ 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  + E D VT+ +++  Y+  G + ++I +F KM     RP    F  VL+A  
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
               +  G +  + ++   + + +      L D   +   +VEA  L   MP E    + 
Sbjct: 252 QMDDIEFGQQVHSFVVK-CNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISY 309

Query: 537 GAFIGACKVHGSI 549
              I  C  +G +
Sbjct: 310 NVLITCCAWNGRV 322


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 317/560 (56%), Gaps = 5/560 (0%)

Query: 54  TIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           TI + +   H F SQ L+     G L+ G  +H++++KL +   + + N++L +Y+K   
Sbjct: 51  TIDDHSFKFHQF-SQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGH 109

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLR 170
                +LFD M  R++V++NT+IS  +    +   +   + +M  ++V+ +HITF  L+ 
Sbjct: 110 IHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIG 169

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           AC     + +    H+  ++ G   N FV S+LVD Y K   +EDA + F+E++  DLV 
Sbjct: 170 ACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVS 229

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN+M+   A N   + A+ +F+ M    ++ D FT +S++ +C   G  K G Q HG  I
Sbjct: 230 WNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAI 289

Query: 291 KQSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           K     +  +  +L+ MY+K    +    ++F  ++  N++SW  M+ GF QN    EA+
Sbjct: 290 KLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAI 349

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
            L ++ML+     ++ + +SIL   G+L+   + +Q+HA  IK+     LS+ NALI+ Y
Sbjct: 350 GLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMY 409

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           SKCGS+  A   F  + + D+V+ T++I +Y  HG  KE++E+  +M S  + PD + FL
Sbjct: 410 SKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFL 469

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
             L ACSHGGLV EG+R F +MI D+++ P  EH+ C+ D+LGR G L EA + +  M I
Sbjct: 470 GCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGI 529

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           E         +GAC+VHG + L + +A+K++EL+P +   Y L++N+YA    W D   +
Sbjct: 530 ESDVLVWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMV 589

Query: 590 RKMMRDNCDHKVPGCSWIEI 609
           R+ +  +   K  GCSW+ +
Sbjct: 590 REKLVSHGLKKQVGCSWVAL 609



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 196/382 (51%), Gaps = 3/382 (0%)

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
           P+ +   +D+       F+ +L+ C  A D+  G  +H++++K+       + + L+ LY
Sbjct: 45  PFEKLETIDDHSFKFHQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLY 104

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD-GAIAVFNLMRLEGMKGDYFTF 266
            K G +  A ++FD +  RD+V +N M+S    N       + +++ M+ E +K ++ TF
Sbjct: 105 LKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITF 164

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           + L+ +C  L + +L    H   ++     +  V +SLVD YAK   ++DA + F+ +  
Sbjct: 165 AGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIME 224

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            ++VSWN M+ G  +N     AV++   ML+G+   D  TL SI+ +C          Q 
Sbjct: 225 LDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQF 284

Query: 387 HAYAIKNGVQAFLSIENALINAYSKC-GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           H  AIK G+     I NALI  YSKC   +A  ++ FGS+ EP++++WT++I  +  +  
Sbjct: 285 HGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQ 344

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
           ++E+I +F++ML   VR +  +F  +L    +   + +G +    +I  +  L D     
Sbjct: 345 NEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGL-DLSVNN 403

Query: 506 CLTDLLGRVGLLVEAYDLLASM 527
            L D+  + G L +A+ +   M
Sbjct: 404 ALIDMYSKCGSLEDAHLVFMKM 425


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 208/623 (33%), Positives = 330/623 (52%), Gaps = 53/623 (8%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEM--RVRNIVTWNTLIS 137
           KQ+HS I+K GL N L  Q++++  +       D+     LF  +  +  NI  WNTLI 
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIR 100

Query: 138 GIINCGGNVTP-------YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
                  ++TP        F +ML   +  +  TF SL ++C ++      ++LH+  LK
Sbjct: 101 A-----HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALK 155

Query: 191 VGFGLNCFVSSALVDLYGKCG-------------------------------FVEDARRV 219
           +   L+  V ++L+ +Y + G                                V+DARR+
Sbjct: 156 LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRL 215

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE+  +D+V WN M++ Y  +   + A+A F  M+   +  +  T  S++++CG L S 
Sbjct: 216 FDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSL 275

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           +LG+ I   V  + F  ++ +  +LVDMY+K G I  A ++FDGM  K+V+ WNTM+ G+
Sbjct: 276 ELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGY 335

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN----GV 395
                  EA+ L   ML+ +  P++VT  ++L +C SL      + VHAY  KN    G 
Sbjct: 336 CHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGN 395

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              +S+  ++I  Y+KCG +  A Q F S+    L +W ++I   A +G ++ ++ +FE+
Sbjct: 396 VNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEE 455

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M++   +PD I F+ VLSAC+  G V  G RYF+ M  DY I P  +HY C+ DLL R G
Sbjct: 456 MINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSG 515

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
              EA  L+ +M +EP     G+ + AC++HG +   ++ AE+L ELEP     Y L+SN
Sbjct: 516 KFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSN 575

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCT 635
           +YA    W DVA++R  + D    KVPGC+ IEI G +H F+  D+ HPQ+ +++ ML  
Sbjct: 576 IYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDE 635

Query: 636 VFGLMEENNVSGHCNVLDKEMDE 658
           V  L+EE       + +  +MDE
Sbjct: 636 VDRLLEETGFVPDTSEVLYDMDE 658



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 235/485 (48%), Gaps = 47/485 (9%)

Query: 12  TVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALK 71
           ++H + P  ++   L +  + T T         L SQ+ +SG ++ ++H+  S +    K
Sbjct: 84  SIHHQPPNIFIWNTLIRAHSLTPTPTSSLH---LFSQMLHSG-LYPNSHTFPSLFKSCAK 139

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF----------------- 114
             A      + KQLH+H +KL L     +   ++H+Y +                     
Sbjct: 140 SKAT----HEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVS 195

Query: 115 --------------DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNV 158
                         DD  +LFDE+  +++V+WN +I+G +  G        F RM   +V
Sbjct: 196 FTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADV 255

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
             +  T  S+L AC     +E+G+ + S++   GFG N  + +ALVD+Y KCG +  AR+
Sbjct: 256 SPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARK 315

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +FD +  +D++LWN M+  Y    L + A+ +F +M  E +  +  TF +++ +C +LG+
Sbjct: 316 LFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGA 375

Query: 279 SKLGRQIHGLV---IKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
             LG+ +H  +   +K + ++ +V + TS++ MYAK G ++ A +VF  M ++++ SWN 
Sbjct: 376 LDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNA 435

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS-ISCETRQVHAYAIKN 393
           M+ G   NG    A+ L  +M+   F PD++T   +LS+C     +    R   +     
Sbjct: 436 MISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDY 495

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEV 452
           G+   L     +I+  ++ G    A    G+++ EPD   W S++ A   HG  +    V
Sbjct: 496 GISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYV 555

Query: 453 FEKML 457
            E++ 
Sbjct: 556 AERLF 560



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 170/354 (48%), Gaps = 41/354 (11%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF-----VEDARRVFDEV 223
           L    +  DI   +++HS I+K G     F  S L++    C       +  A  +F  +
Sbjct: 29  LNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEF---CALSPSRDLSYALSLFHSI 85

Query: 224 LCR--DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
             +  ++ +WN ++  ++L      ++ +F+ M   G+  +  TF SL  SC    ++  
Sbjct: 86  HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAK------------------------------- 310
            +Q+H   +K +  L   V TSL+ MY++                               
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVS 205

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G++DDA R+FD + AK+VVSWN M+ G+ Q+G   EA+     M +    P++ T+ S+
Sbjct: 206 EGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSV 265

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           LS+CG L      + + ++    G    L + NAL++ YSKCG I  A + F  +++ D+
Sbjct: 266 LSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDV 325

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + W ++IG Y    L +E++ +FE ML   V P+ + FL VL AC+  G +  G
Sbjct: 326 ILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG 379


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 199/594 (33%), Positives = 315/594 (53%), Gaps = 24/594 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  +      G  + G  +H  I+K GL    +L N ++  Y KC       +LF+ + 
Sbjct: 228 YASVVNACGSSGEEKYGAMVHGRIIKAGL-EATNLWNSLVTFYGKCGNLQHASQLFERIS 286

Query: 126 VRNIVTWNTLISG--IINCGGNVTPYFRRMLL--DNVRLDHITFNSLLRACVQADDIEVG 181
            +++V+WN +I+       G N    FRRML     V+ + +TF SLL A      +  G
Sbjct: 287 RKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCG 346

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R +H+ I ++   ++  ++++L+  Y KC  V  AR +F+ +L RD++ WN M++ Y  N
Sbjct: 347 REIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQN 406

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS----KLGRQIHGLVIKQ--SFD 295
                   +F  M L G++ D  + + + N+     S     + G++IHG ++++     
Sbjct: 407 EQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGG 466

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           + + V+ +++ MYAK   I DA ++F GM  ++  SWN M+ G+ +N    + + +  D+
Sbjct: 467 VSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDI 526

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQ-----AFLSIENALINA 408
           L+  F  D V+L+ +L+SCG L      +Q HA   K  NG       + LSI NALI+ 
Sbjct: 527 LKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISM 586

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           YSKCGSI  A Q F  ++  D+ +WT++I   A HGL+ E++++FE+M +  ++P+ + F
Sbjct: 587 YSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTF 646

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL--AS 526
           L +L AC+HGGLV EG  YF+ M +DY + P  EHY C+ DL GR G    A  L+    
Sbjct: 647 LALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGI 706

Query: 527 MPIEPRSDTL----GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
              +P  D +       +GAC     + L   AA K+LELEP     Y L++N+YAS   
Sbjct: 707 TLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGL 766

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           W D  ++RK MRD    K  GCSWI+     H FV+ D  HPQ   +Y  L  +
Sbjct: 767 WEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQL 820



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 243/487 (49%), Gaps = 51/487 (10%)

Query: 9   PIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQ 68
           P+ T  FK P   L P++  N T+            L S LRN     +     H F SQ
Sbjct: 6   PVAT--FKVPPRPLLPSIKSNVTSF---------RFLHSHLRNK----QLEFQNHGFSSQ 50

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
                               I +   C+K  L +Q  H  +KC      ++LFD    R+
Sbjct: 51  -------------------FIFRCSACSKF-LVSQSEHERLKCA-----QQLFDNFPNRD 85

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +++W+ LI+    CG     +  F++M+ + ++ +  +  SLL+      +I + R+LH 
Sbjct: 86  VISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHG 145

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSCYALNCLG 244
           + ++ GFGL+  + +A + +Y +CG +EDA+RVFDE  +L  D++LWN +++ Y  +   
Sbjct: 146 WSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCW 205

Query: 245 DGAIAVFNLMRLEGMKGDY-FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              + +F  M   G+      T++S+VN+CG+ G  K G  +HG +IK   +   L   S
Sbjct: 206 VEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNL-WNS 264

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML--QGSFC 361
           LV  Y K GN+  A ++F+ ++ K+VVSWN M+    Q G+G  A+ L R ML  +    
Sbjct: 265 LVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQ 324

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+ VT  S+LS+   LS     R++HA+  +  ++   SI N+LI  YSKC  +  A + 
Sbjct: 325 PNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREI 384

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   D+++W S++  Y  +       ++F++M+   + PDS +   + +A S     
Sbjct: 385 FERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRD--- 441

Query: 482 SEGLRYF 488
           S GL YF
Sbjct: 442 SSGLIYF 448



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 244/503 (48%), Gaps = 33/503 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE--MRVR 127
           LKVS   G +   +QLH   ++ G      ++   + +Y +C   +D +++FDE  +   
Sbjct: 128 LKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLAL 187

Query: 128 NIVTWNTLISGII--NCGGNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +I+ WN++I+  I   C   V   F +M+ +  V    +T+ S++ AC  + + + G  +
Sbjct: 188 DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMV 247

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I+K G       +S LV  YGKCG ++ A ++F+ +  +D+V WN M++       G
Sbjct: 248 HGRIIKAGLEATNLWNS-LVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEG 306

Query: 245 DGAIAVF-NLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           + A+ +F  ++++E  ++ +  TF SL+++   L + + GR+IH  + + S ++D  +  
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITN 366

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+  Y+K   +  A  +F+ +  ++++SWN+M+ G+ QN        + + M+     P
Sbjct: 367 SLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEP 426

Query: 363 DEVTLASILSSCGSLSISC----ETRQVHAYAIKN----GVQAFLSIENALINAYSKCGS 414
           D  +L  I ++    S         +++H Y ++     GV   LS+ NA++  Y+K   
Sbjct: 427 DSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVS--LSVSNAILKMYAKFNR 484

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           IA A + F  +K  D  +W +++  Y+ +   ++ + +F  +L      D ++   +L++
Sbjct: 485 IADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTS 544

Query: 475 CSHGGLVSEGL-RYFNLMISDYHILPDSEHY-------TCLTDLLGRVGLLVEAYDLLAS 526
           C  G LVS  L + F+ +++      D  H          L  +  + G + +A  +   
Sbjct: 545 C--GRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLK 602

Query: 527 MPIEPRSDTLG--AFIGACKVHG 547
           M    R D     A I  C  HG
Sbjct: 603 M---ERKDVFSWTAMITGCAHHG 622



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 142/285 (49%), Gaps = 32/285 (11%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCK 112
           I   +HS    ++ A + S+   + ++GK++H +I++        LS+ N +L +Y K  
Sbjct: 424 IEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFN 483

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLR 170
              D EK+F  M+ R+  +WN ++ G        +V   F  +L     LDH++ + LL 
Sbjct: 484 RIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLT 543

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNC-------FVSSALVDLYGKCGFVEDARRVFDEV 223
           +C +   +++G++ H+ + K+  G +C        +++AL+ +Y KCG ++DA +VF ++
Sbjct: 544 SCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKM 603

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             +D+  W  M++  A + L   A+ +F  M+ +G+K +  TF +L+ +C          
Sbjct: 604 ERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAH-------- 655

Query: 284 QIHGLVIKQSFDLDVLVA-----------TSLVDMYAKNGNIDDA 317
              GLV + S+  D +               ++D++ ++G  D A
Sbjct: 656 --GGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRA 698


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 284/503 (56%), Gaps = 7/503 (1%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           LF      N  ++N +I G+ N   +       +RRM    ++ D  T+N +  AC + +
Sbjct: 87  LFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLE 146

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           +I VGR +HS + KVG   +  ++ +L+ +Y KCG V  AR++FDE+  RD V WN M+S
Sbjct: 147 EIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMIS 206

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y+       A+ +F  M  EG + D  T  S++ +C  LG  + GR +  + I +   L
Sbjct: 207 GYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGL 266

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
              + + L+ MY K G++D A RVF+ M  K+ V+W  M+  + QNG   EA KL  +M 
Sbjct: 267 STFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEME 326

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    PD  TL+++LS+CGS+      +Q+  +A +  +Q  + +   L++ Y KCG + 
Sbjct: 327 KTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVE 386

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            AL+ F ++   +  TW ++I AYA  G +KE++ +F++M   +V P  I F+ VLSAC 
Sbjct: 387 EALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACV 443

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV +G RYF+ M S + ++P  EHYT + DLL R G+L EA++ +   P +P    L
Sbjct: 444 HAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIML 503

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPV-NYALVSNVYASERCWFDVARLRKMMRD 595
            A +GAC     + + + A   L+E++ +K   NY + SNV A  + W + A++R +MRD
Sbjct: 504 AAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRD 563

Query: 596 NCDHKVPGCSWIEIAGEIHTFVS 618
               K PGCSWIEI GE+  F++
Sbjct: 564 RGVVKTPGCSWIEIEGELMEFLA 586



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 203/404 (50%), Gaps = 38/404 (9%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK   +  G+ +HS + K+GL   + + + ++ +Y KC       KLFDE+  R+ V+WN
Sbjct: 143 AKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWN 202

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++ISG    G   +    FR+M  +    D  T  S+L AC    D+  GR L    +  
Sbjct: 203 SMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITK 262

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
             GL+ F+ S L+ +YGKCG ++ ARRVF++++ +D V W  M++ Y+ N     A  +F
Sbjct: 263 KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLF 322

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G+  D  T S+++++CG++G+ +LG+QI     + S   ++ VAT LVDMY K 
Sbjct: 323 FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKC 382

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +++A RVF+ M  KN  +WN M+  +   G  +EA+ L   M   S  P ++T   +L
Sbjct: 383 GRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVL 439

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           S+C           VHA  +  G + F  + +                  FG V  P + 
Sbjct: 440 SAC-----------VHAGLVHQGCRYFHEMSS-----------------MFGLV--PKIE 469

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            +T+II   +  G+  E+ E  E+      +PD I    +L AC
Sbjct: 470 HYTNIIDLLSRAGMLDEAWEFMERFPG---KPDEIMLAAILGAC 510


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 318/577 (55%), Gaps = 3/577 (0%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G + +        +   +K  A+ G L +G+  H  ++KLGL + +   N ++  Y K  
Sbjct: 97  GMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLG 156

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCG-GNVTPYFRRMLLDNVRLDH--ITFNSLL 169
             +D E++FD M VR+IVTWN ++ G ++ G G++     + + D + + H  +   + L
Sbjct: 157 LVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAAL 216

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
            AC        G+ +H ++++ G   +  V ++L+D+Y KCG V  AR VF  +  R +V
Sbjct: 217 AACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVV 276

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            WN M+  YALN   D A   F  MR EG++ +  T  +L+ +C    SS  GR +HG V
Sbjct: 277 TWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYV 336

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           +++ F   V++ T+L++MY K G ++ + ++F  +  K +VSWN M+  +       EA+
Sbjct: 337 VRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAI 396

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
            L  ++L     PD  T+++++ +   L      RQ+H+Y I  G      I NA+++ Y
Sbjct: 397 TLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMY 456

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           ++ G +  + + F  +   D+++W ++I  YA HG  K ++E+F++M  + ++P+   F+
Sbjct: 457 ARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFV 516

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            VL+ACS  GLV EG  +FNLM+ +Y ++P  EHY C+TDLLGR G L E    + SMPI
Sbjct: 517 SVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPI 576

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           +P S   G+ + A +    I +A++AAE++ +LE      Y ++S++YA    W DV R+
Sbjct: 577 DPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERV 636

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
           R +M++    +    S +E+     +F + D SH Q+
Sbjct: 637 RLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQS 673



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 169/327 (51%), Gaps = 3/327 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           +R ML D  R D  TF  +++ C +   ++ GR  H  ++K+G   + +  ++LV  Y K
Sbjct: 95  YRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAK 154

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR--LEGMKGDYFTFS 267
            G VEDA RVFD +  RD+V WN+MV  Y  N LG  A+A F  M   LE ++ D     
Sbjct: 155 LGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALE-VQHDSVGII 213

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           + + +C    SS  G++IHG VI+   + D+ V TSL+DMY K G +  A  VF  M  +
Sbjct: 214 AALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
            VV+WN M+ G+  N    EA      M       + VT  ++L++C     S   R VH
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
            Y ++      + +E AL+  Y K G +  + + FG +    LV+W ++I AY +  +  
Sbjct: 334 GYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYT 393

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           E+I +F ++L+  + PD      V+ A
Sbjct: 394 EAITLFLELLNQPLYPDYFTMSTVVPA 420



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 163/317 (51%), Gaps = 2/317 (0%)

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           S +LV      G +++A      V   D  L NVM+  +A   L  GA+A +  M  +G 
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + D FTF  +V  C  LG    GR  HG+VIK   + DV    SLV  YAK G ++DA R
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAER 163

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLS 378
           VFDGM  +++V+WN MV G+  NG G  A+   ++M        D V + + L++C    
Sbjct: 164 VFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEF 223

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
            S + +++H Y I++G++  + +  +L++ Y KCG +A A   F ++    +VTW  +IG
Sbjct: 224 SSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIG 283

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            YA +    E+ + F +M +  ++ + +  + +L+AC+       G R  +  +     L
Sbjct: 284 GYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYG-RSVHGYVVRRQFL 342

Query: 499 PDSEHYTCLTDLLGRVG 515
           P     T L ++ G+VG
Sbjct: 343 PHVVLETALLEMYGKVG 359


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 203/564 (35%), Positives = 314/564 (55%), Gaps = 11/564 (1%)

Query: 54  TIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           ++H + H  +  +S   K  A+    Q     H H +K  L +   +   ++  Y K   
Sbjct: 125 SLHPTPHD-YVLFSIVFKSCAESRDFQTLTITHCHFVK-SLPSDSFVLTCLVDAYAKFAR 182

Query: 114 FDDMEKLFDEMRVRN-IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLR 170
            D+  + FDE+   + +V+W ++I   +  +C       F RM    V  +  T  SL+ 
Sbjct: 183 VDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVS 242

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC----R 226
           AC + + +  G+ +H F++K G  +N +++++L+++Y KCG ++DA +VFDE       R
Sbjct: 243 ACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDR 302

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           DLV W  M+  Y+       A+ +F   +  G+  +  T SSL++SC  LG+S +G+ +H
Sbjct: 303 DLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLH 362

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           GL +K   D D  V  +LVDMYAK G + DA  VF+ M  K+VVSWN+++ GF Q+G+  
Sbjct: 363 GLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAY 421

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENAL 405
           EA+ L R M    F PD VT+  ILS+C SL +      VH  A+K+G V + + +  AL
Sbjct: 422 EALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTAL 481

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +N Y+KCG    A   F S+ E + VTW ++IG Y   G    S+ +F  ML   V P+ 
Sbjct: 482 LNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNE 541

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           + F  +L+ACSH G+V EG R FNLM  + + +P  +HY C+ D+L R G L EA D + 
Sbjct: 542 VVFTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIE 601

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            MP++P     GAF+  C +H    L   A +K+LEL P +   Y LVSN+YAS+  W  
Sbjct: 602 RMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGM 661

Query: 586 VARLRKMMRDNCDHKVPGCSWIEI 609
           V ++R+M++    +KVPGCS +E+
Sbjct: 662 VKQVREMIKQRGLNKVPGCSSVEM 685



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/492 (30%), Positives = 248/492 (50%), Gaps = 16/492 (3%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140
           K LH+  +  GL N L L  ++L +Y          K+F+ +  R++  +  +I      
Sbjct: 50  KTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLN 109

Query: 141 NCGGNVTPYFR--RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
           +    V   +R  R+ L     D++ F+ + ++C ++ D +     H   +K     + F
Sbjct: 110 DTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFVK-SLPSDSF 168

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           V + LVD Y K   V++A R FDE+    D+V W  M+  Y  N      + +FN MR  
Sbjct: 169 VLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREA 228

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            + G+ FT  SLV++C  L     G+ +HG VIK    ++  + TSL++MY K GNI DA
Sbjct: 229 FVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDA 288

Query: 318 CRVFDGMTA----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           C+VFD  ++    +++VSW  M+VG+ Q G    A++L +D       P+ VT++S+LSS
Sbjct: 289 CKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSS 348

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C  L  S   + +H  A+K G+     + NAL++ Y+KCG ++ A   F ++ E D+V+W
Sbjct: 349 CAQLGNSVMGKLLHGLAVKCGLDDH-PVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSW 407

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            SII  +   G + E++ +F +M      PD++  + +LSAC+  G++  G     L + 
Sbjct: 408 NSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALK 467

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH----GSI 549
           D  ++      T L +   + G    A  +  SM  E  + T GA IG   +     GS+
Sbjct: 468 DGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMG-EKNAVTWGAMIGGYGMQGDGNGSL 526

Query: 550 GLAKWAAEKLLE 561
            L +   E+L+E
Sbjct: 527 TLFRDMLEELVE 538


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 317/603 (52%), Gaps = 24/603 (3%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+  L+  A    L+ G QLH+H +K        ++   L +Y KC    D + LF
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 297

Query: 122 DEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D+    N  ++N +I+G      G      F R++   +  D I+ + + RAC     + 
Sbjct: 298 DKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLS 357

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +++   +K    L+  V++A +D+YGKC  + +A RVFDE+  RD V WN +++ + 
Sbjct: 358 EGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHE 417

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N  G   + +F  M    ++ D FTF S++ +C T GS   G +IH  ++K     +  
Sbjct: 418 QNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKAC-TGGSLGYGMEIHSSIVKSGMASNSS 476

Query: 300 VATSLVDMYAKNGNIDDACRV----------------FDGMTAKNV----VSWNTMVVGF 339
           V  SL+DMY+K G I++A ++                 + M  K +    VSWN+++ G+
Sbjct: 477 VGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGY 536

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
                  +A  L   M++    PD+ T A++L +C +L+ +   +Q+HA  IK  +Q+ +
Sbjct: 537 VMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDV 596

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            I + L++ YSKCG +  +   F      D VTW ++I  YA HG  +E+I++FE+M+  
Sbjct: 597 YISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILE 656

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++P+ + F+ +L AC+H GL+ +GL YF +M  DY + P   HY+ + D+LG+ G +  
Sbjct: 657 NIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKR 716

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVH-GSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           A +L+  MP E         +G C +H  ++ +A+ A   LL L+P     Y L+SNVYA
Sbjct: 717 ALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYA 776

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
               W  V+ LR+ MR     K PGCSW+E+  E+H F+  D++HP+   +Y  L  ++ 
Sbjct: 777 DAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYS 836

Query: 639 LME 641
            M+
Sbjct: 837 EMK 839



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 146/522 (27%), Positives = 254/522 (48%), Gaps = 32/522 (6%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           G Q+H  ++++G    +   + +L +Y K K F +  ++F  +  +N V+W+ +I+G + 
Sbjct: 157 GMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 216

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            N       +F+ M   N  +    + S+LR+C    ++ +G +LH+  LK  F  +  V
Sbjct: 217 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 276

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A +D+Y KC  ++DA+ +FD+    +   +N M++ Y+    G  A+ +F+ +   G+
Sbjct: 277 RTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 336

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  + S +  +C  +     G QI+ L IK S  LDV VA + +DMY K   + +A R
Sbjct: 337 GFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFR 396

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC--GSL 377
           VFD M  ++ VSWN ++    QNG G E + L   ML+    PDE T  S+L +C  GSL
Sbjct: 397 VFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSL 456

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF----------GSVKE 427
               E   +H+  +K+G+ +  S+  +LI+ YSKCG I  A +            G+++E
Sbjct: 457 GYGME---IHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEE 513

Query: 428 PD----------LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            +           V+W SII  Y     S+++  +F +M+   + PD   +  VL  C++
Sbjct: 514 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 573

Query: 478 GGLVSEGL-RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
             L S GL +  +  +    +  D    + L D+  + G L ++  L+    +     T 
Sbjct: 574 --LASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSR-LMFEKSLRRDFVTW 630

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
            A I     HG    A    E+++ LE  KP +   +S + A
Sbjct: 631 NAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRA 671



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 229/480 (47%), Gaps = 35/480 (7%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK G L+ GKQ H+H++  G      + N +L VY   + F     +FD M +R++V+WN
Sbjct: 17  AKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWN 76

Query: 134 TLISGIINCGGNVTP--YFRRMLLDNV-------------------------------RL 160
            +I+G       V    +F  M + +V                                 
Sbjct: 77  KMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEF 136

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  TF  +L+ C   +D  +G ++H  +++VG   +   +SAL+D+Y K     ++ RVF
Sbjct: 137 DGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 196

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +  ++ V W+ +++    N L   A+  F  M+          ++S++ SC  L   +
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 256

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG Q+H   +K  F  D +V T+ +DMYAK  N+ DA  +FD     N  S+N M+ G+ 
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYS 316

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q   G +A+ L   ++      DE++L+ +  +C  +    E  Q++  AIK+ +   + 
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVC 376

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NA I+ Y KC ++A A + F  ++  D V+W +II A+  +G   E++ +F  ML   
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD   F  VL AC+ GG +  G+   + ++    +  +S     L D+  + G++ EA
Sbjct: 437 IEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEA 494



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 193/400 (48%), Gaps = 34/400 (8%)

Query: 161 DHITFNSLLRA--CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           +++ F  + RA  C +   +E+G++ H+ ++  GF    FV + L+ +Y        A  
Sbjct: 3   ENLRFLRMNRAVECAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASM 62

Query: 219 VFDEVLCRDLVLWNVMVSCYA----------------------LNCLGDG---------A 247
           VFD +  RD+V WN M++ YA                       N +  G         +
Sbjct: 63  VFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKS 122

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           I VF  M   G + D  TF+ ++  C  L  + LG QIHG+V++   D DV+ A++L+DM
Sbjct: 123 IEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDM 182

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK     ++ RVF G+  KN VSW+ ++ G  QN     A+K  ++M + +    +   
Sbjct: 183 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 242

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           AS+L SC +LS      Q+HA+A+K+   A   +  A ++ Y+KC ++  A   F   + 
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSEN 302

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            +  ++ ++I  Y+      +++ +F +++S  +  D I+   V  AC+    +SEGL+ 
Sbjct: 303 LNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           ++L I     L D        D+ G+   L EA+ +   M
Sbjct: 363 YDLAIKSSLSL-DVCVANAAIDMYGKCQALAEAFRVFDEM 401


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 205/617 (33%), Positives = 326/617 (52%), Gaps = 42/617 (6%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVR---NIVTWNTLI 136
           KQ+HS I+K GL N + +Q++++H +       D+     LF+E +     N+  WN+LI
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIH-FCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLI 103

Query: 137 SGIINCGGNVTPYFR--RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            G       ++      RML   V+ +  TF  L ++C +A     G++LH+  LK+   
Sbjct: 104 RGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALH 163

Query: 195 LNCFVSSALVDLYGKCGF-------------------------------VEDARRVFDEV 223
            N  V ++++ +Y   G                                ++DARR+FDE+
Sbjct: 164 FNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEI 223

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             +D+V WN M+S Y  +   + AI  F  M+   +  +  T   ++++CG   S +LG+
Sbjct: 224 PVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGK 283

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            I   V    F  ++ +  +L+DMY K G  D A  +FDG+  K+V+SWNTM+ G+    
Sbjct: 284 WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLS 343

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIE 402
              EA+ L   ML+ +  P++VT   IL +C  L      + VHAY  KN    +  S+ 
Sbjct: 344 LYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLW 403

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV- 461
            +LI+ Y+KCG I  A + F S+   +L +W +++  +A HG ++ ++ +F +M++  + 
Sbjct: 404 TSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLF 463

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           RPD I F+ VLSAC+  GLV  G +YF  MI DY I P  +HY C+ DLL R     EA 
Sbjct: 464 RPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAE 523

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
            L+ +M +EP     G+ + ACK HG +   ++ AE+L +LEP     + L+SN+YA   
Sbjct: 524 ILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAG 583

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
            W DVAR+R  + D    KVPGC+ IEI G++H F+  D+ HP+  ++Y ML  V  L+E
Sbjct: 584 RWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLE 643

Query: 642 ENNVSGHCNVLDKEMDE 658
           EN    + + +  +MDE
Sbjct: 644 ENGFVPNTSEVLYDMDE 660



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 220/456 (48%), Gaps = 43/456 (9%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVY------ 108
           +  ++H+    +    K  A      +GKQLH+H +KL L     +   V+H+Y      
Sbjct: 127 VQPNSHTFPFLFKSCTKAKAT----HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEM 182

Query: 109 -------------------------VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
                                    V     DD  +LFDE+ V+++V+WN +ISG +  G
Sbjct: 183 DFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSG 242

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                   F  M   NV  +  T   +L AC      E+G+ + S++   GFG N  +++
Sbjct: 243 RFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTN 302

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D+Y KCG  + AR +FD +  +D++ WN M+  Y+   L + A+A+F +M    +K 
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKP 362

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD-LDVLVATSLVDMYAKNGNIDDACRV 320
           +  TF  ++++C  LG+  LG+ +H  + K   +  +  + TSL+DMYAK G I+ A RV
Sbjct: 363 NDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERV 422

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSI 379
           F  M ++N+ SWN M+ GF  +G    A+ L  +M+ +G F PD++T   +LS+C    +
Sbjct: 423 FRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGL 482

Query: 380 SCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSII 437
                Q     I++ G+   L     +I+  ++      A     +++ EPD   W S++
Sbjct: 483 VDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLL 542

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            A   HG  +    V E++    + P++     +LS
Sbjct: 543 SACKAHGRVEFGEYVAERLFQ--LEPENAGAFVLLS 576


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 306/553 (55%), Gaps = 3/553 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK   + G  + G+ +H+ ++K GL     L + ++ +Y +C + ++  ++F  +   ++
Sbjct: 259 LKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDV 318

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V  + +IS     +        F +M    V+ +H  F  +     +  D  + R +H++
Sbjct: 319 VHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAY 378

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I+K GF +   V  A++++Y K G V+DA   FD +   D   WN ++S +      +  
Sbjct: 379 IVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQG 438

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M  EG   + +T+ S++  C +L + + G Q+H  ++K     D  V+  LVDM
Sbjct: 439 LRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDM 498

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YA++G    AC VF+ +  ++  SW  ++ G+ +  +  + V+  R ML+ +  P + TL
Sbjct: 499 YAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATL 558

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           A  LS C  ++      Q+H++AIK+G  + + +  AL++ Y KCG+IA A   F   + 
Sbjct: 559 AVSLSVCSDMASLGSGLQLHSWAIKSGWNSSV-VSGALVDMYVKCGNIADAEMLFHESET 617

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D V W +II  Y+ HG   ++++ F++M+    RPD I F+ VLSACSH GL++EG +Y
Sbjct: 618 RDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKY 677

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F  + S Y I P  EHY C+ D+L + G LVEA  L+  MP+ P S      +GAC++H 
Sbjct: 678 FKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHR 737

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I +A+ AAE+L ELEP    +  L+SN+YA    W DV R+R ++ D+   K PGCSWI
Sbjct: 738 NIEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWI 797

Query: 608 EIAGEIHTFVSSD 620
           EI G+IH F+S D
Sbjct: 798 EINGQIHMFLSQD 810



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 196/411 (47%), Gaps = 2/411 (0%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           Q+H  ++KL   +   + + ++  Y  C   D  E +   +  R+ V+WN L++G    G
Sbjct: 172 QVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHG 231

Query: 144 G--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
               V     +++     +   T  ++L+ C++    + G+ +H+ ++K G   +  ++S
Sbjct: 232 DYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNS 291

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            LV++Y +C   E+A  VF  +   D+V  + M+SC+  + +   A+ +F  M   G+K 
Sbjct: 292 CLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKP 351

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           +++ F  +       G + L R +H  ++K  F +   V  ++++MY K G + DA   F
Sbjct: 352 NHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTF 411

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D +   +  SWNT++  F    +  + +++ + M    F  ++ T  S+L  C SL    
Sbjct: 412 DLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLR 471

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              QVHA  +K+G+Q    +   L++ Y++ G    A   F  +KE D  +WT I+  YA
Sbjct: 472 FGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYA 531

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
               +++ +E F  ML   +RP        LS CS    +  GL+  +  I
Sbjct: 532 KTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAI 582



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 167/311 (53%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L+ C     +  G+ LH+ +L+     + F+  +L+++Y KCG + DARRVFD +  RD+
Sbjct: 57  LQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDI 116

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V W  M+S +      D A+ +F  M  EG+  + FT +S++ +C     SK   Q+HG 
Sbjct: 117 VAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQ 176

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V+K +   D  V +SLV+ Y   G +D A  V  G+  ++ VSWN ++ G+ ++GD R  
Sbjct: 177 VVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRV 236

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + ++  ++       + TL ++L  C  L ++   + VHA  IK G++    + + L+  
Sbjct: 237 MIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEM 296

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           YS+C S   A + F  + EPD+V  +++I  +  H ++ E++++F KM    V+P+   F
Sbjct: 297 YSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIF 356

Query: 469 LEVLSACSHGG 479
           + +    S  G
Sbjct: 357 VGIAGVASRTG 367



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 212/437 (48%), Gaps = 9/437 (2%)

Query: 46  SSQLRNSGTIHESTHSAH-SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV 104
           SS    +  +H   H+     ++ AL+  A    L++G++LH+ +++  L     L + +
Sbjct: 32  SSPSHANARLHTVAHAEELRLHAAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSL 91

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDH 162
           L++Y KC    D  ++FD M  R+IV W  +IS     G +      F RM  + +  + 
Sbjct: 92  LNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNG 151

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
            T  S+L+AC      +   ++H  ++K+    + +V S+LV+ Y  CG ++ A  V   
Sbjct: 152 FTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLG 211

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  R  V WN +++ YA +      + +   +   G +   +T  +++  C  LG +K G
Sbjct: 212 LPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYG 271

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           + +H  VIK+  + D ++ + LV+MY++  + ++A  VF  +   +VV  + M+  F ++
Sbjct: 272 QSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRH 331

Query: 343 GDGREAVKLLRDMLQGSFCPDE---VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
               EA+ L   M      P+    V +A + S  G  ++    R VHAY +K+G     
Sbjct: 332 DMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANL---CRSVHAYIVKSGFAMLK 388

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + +A++N Y K G++  A   F  + EPD  +W +I+ A+      ++ + +F++M   
Sbjct: 389 GVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACE 448

Query: 460 AVRPDSIAFLEVLSACS 476
               +   ++ VL  C+
Sbjct: 449 GFSANKYTYVSVLRCCT 465



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 3/259 (1%)

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           ++ +  C    + + G+++H  +++ +   D  +  SL++MY K G + DA RVFDGM  
Sbjct: 54  AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +++V+W  M+      GD  +A+ +   M Q    P+  TLAS+L +C   S S  T QV
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQV 173

Query: 387 HAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           H   +K NG+     + ++L+ AY+ CG +  A      + E   V+W +++  YA HG 
Sbjct: 174 HGQVVKLNGLDDPY-VGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGD 232

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            +  + + EK+++            VL  C   GL   G +  +  +    +  D+   +
Sbjct: 233 YRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYG-QSVHASVIKRGLETDNVLNS 291

Query: 506 CLTDLLGRVGLLVEAYDLL 524
           CL ++  R     EAY++ 
Sbjct: 292 CLVEMYSRCLSAEEAYEVF 310



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 17/281 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+       L+ G Q+H+ I+K GL N   +   ++ +Y +   F     +F++++
Sbjct: 457 YVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLK 516

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+  +W  ++SG         V  YFR ML +N+R    T    L  C     +  G +
Sbjct: 517 ERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQ 576

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LHS+ +K G+  +  VS ALVD+Y KCG + DA  +F E   RD V WN ++  Y+ +  
Sbjct: 577 LHSWAIKSGWN-SSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGH 635

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-------IHGLVIKQSFDL 296
           G  A+  F  M  EG + D  TF  ++++C   G    GR+       I+G+        
Sbjct: 636 GYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEH-- 693

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMV 336
                  +VD+ +K G + +A  + + M  A +   W T++
Sbjct: 694 ----YACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTIL 730


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 281/469 (59%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            +SLL+ C +  +   G+  H  ++++G   +   S+ L+++Y KCG +  A +VFDE+ 
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIP 60

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R +V WN+M+     N   + AI +F  M+ EG     FT SS+V +C   G     RQ
Sbjct: 61  ERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQ 120

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H   IK   D DV V T+L+D+YAK G+I+DA  VF+GM  +N V+W+++V GF QN  
Sbjct: 121 LHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNEL 180

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             E + L     +     ++  ++S++ +C  L+   E RQVHA   + G      + +A
Sbjct: 181 YEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASA 240

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+KCGSI  A   F ++++ ++V W +II  +A H  S E + +FE+M    ++PD
Sbjct: 241 LVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPD 300

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + ++ VLSAC H GLV +G  YF+LM  ++++ P+  HY+C+ D+LGR GL+ EA++L+
Sbjct: 301 EVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELM 360

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP    +   G+ + +C++HG++ LA+ AA+ L E+EP +  NY L++N YA+ + W 
Sbjct: 361 TKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWE 420

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           + A+ RK ++ +   K  G SWIEI  ++HTF++ +R+HP+   +Y  L
Sbjct: 421 EAAKARKSLKGSEILKERGKSWIEIKDKVHTFMAGERTHPRITDIYLEL 469



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 163/295 (55%), Gaps = 2/295 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK  H  +++LGL       N ++++Y KC       K+FDE+  R++V+WN +I   + 
Sbjct: 17  GKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQ 76

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F  M  +       T +S++ AC    D+   R+LH+F +K     + FV
Sbjct: 77  NGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFV 136

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+D+Y KCG +EDA  VF+ +  R+ V W+ +V+ +  N L +  + +F   +  G+
Sbjct: 137 GTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGL 196

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + + F  SS++ +C  L +   GRQ+H +V +  F  +  VA++LVDMYAK G+I++A  
Sbjct: 197 ENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYV 256

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +F  +  KNVV WN ++ GF ++    E + L  +M Q    PDEVT  ++LS+C
Sbjct: 257 LFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSAC 311



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  ++  A    L +G+Q+H+ + + G      + + ++ +Y KC + ++   LF  +  
Sbjct: 204 SSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEK 263

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N+V WN +ISG     C   V   F  M    ++ D +T+ ++L ACV    ++ GR  
Sbjct: 264 KNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSY 323

Query: 185 HSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSCYALN 241
              + +      N    S +VD+ G+ G V +A  +  ++       +W +++ SC    
Sbjct: 324 FDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHG 383

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTF 266
            L    IA  NL  +E  +G  +  
Sbjct: 384 NLELAEIAAKNLFEMEPDRGGNYVL 408


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/568 (33%), Positives = 311/568 (54%), Gaps = 3/568 (0%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + + F    L  ++ F  L  GK +H+H+M   +   L L+  ++ +Y KC++ +D  K+
Sbjct: 214 APNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKV 273

Query: 121 FDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
                  ++  W  +ISG             F  M    V  ++ T++ +L AC     +
Sbjct: 274 SKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILAL 333

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLVLWNVMVSC 237
           ++G+++HS ++  G   +  V ++LVD+Y KC   +EDA R F  +   +++ W  +++ 
Sbjct: 334 DLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAG 393

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           ++ + L + +I VF  M+  G++ + FT S+++ +CGT+ S    R++HG +IK + D D
Sbjct: 394 FSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADND 453

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           V+V  +LVD YA  G +DDA  V   M  ++V+++ ++     Q G+   A+ ++  M +
Sbjct: 454 VVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNK 513

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
                D  +LAS LS+   + I    +Q+H Y++K+G+ +++S+ N L++ Y KCG I  
Sbjct: 514 DDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHD 573

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A + F  + EPD V+W  +I   A +G    ++  FE M    V PD I  L VL ACSH
Sbjct: 574 AHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSH 633

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
           GGLV  GL YF  M   + I P  +HY CL DLLGR G L EA +++ +MP +P +    
Sbjct: 634 GGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYK 693

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             +GACK+HG+I L +  A + LEL+PS P  Y L++N+Y          + R+MMR+  
Sbjct: 694 TLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERG 753

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
             K PG SW+E    +H F + D SHPQ
Sbjct: 754 VRKNPGQSWMEERNMVHLFTAGDTSHPQ 781



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 215/400 (53%), Gaps = 4/400 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS- 137
           ++ G  +HS I+K+G    + L N +L +Y KC    +  +LFDEM  R++ +W  L+S 
Sbjct: 31  VRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSA 90

Query: 138 -GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            G I         F  ML+     +  T ++ LR+C    +   G R  + + K GF  N
Sbjct: 91  YGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSN 150

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + SAL+D Y KCG  ++A RVF+ +   D+V W +MVS +        A+ +++ M  
Sbjct: 151 PVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQ 210

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+  + FTF  L+ +   LG +  G+ +H  ++    +L++++ T+LVDMY K  +I+D
Sbjct: 211 TGVAPNEFTFVKLLAASSFLGLN-YGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIED 269

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A +V       +V  W  ++ GF Q+   REA+    +M      P+  T + IL++C S
Sbjct: 270 AVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSS 329

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-IAGALQCFGSVKEPDLVTWTS 435
           +      +Q+H+  +  G++  +S+ N+L++ Y KC + I  A++ F  +  P++++WTS
Sbjct: 330 ILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTS 389

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           +I  ++ HGL +ESI+VF  M    VRP+S     +L AC
Sbjct: 390 LIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 210/413 (50%), Gaps = 4/413 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL+  +       G +  + + K G  +   L + ++  Y KC    +  ++F+ M  
Sbjct: 120 STALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNN 179

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +IV+W  ++S  +  G        + RM+   V  +  TF  LL A      +  G+ +
Sbjct: 180 GDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLL-AASSFLGLNYGKLV 238

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++     LN  + +ALVD+Y KC  +EDA +V    L  D+ LW  ++S +  +   
Sbjct: 239 HAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKF 298

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             AI  F+ M   G+  + FT+S ++N+C ++ +  LG+QIH  V+    + DV V  SL
Sbjct: 299 REAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSL 358

Query: 305 VDMYAKNGN-IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           VDMY K  N I+DA R F G+ + NV+SW +++ GF ++G   E++K+   M      P+
Sbjct: 359 VDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPN 418

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             TL++IL +CG++    +TR++H Y IKN     + + NAL++AY+  G +  A     
Sbjct: 419 SFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTS 478

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            +K  D++T+TS+       G  + ++ +   M    VR D  +    LSA +
Sbjct: 479 MMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAA 531



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 200/410 (48%), Gaps = 45/410 (10%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS I+K+GF  + F+S+ L+ LYGKC  V +AR++FDE+ CRD+  W +++S Y     
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F+ M + G   + FT S+ + SC  L     G +   LV K  FD + ++ ++
Sbjct: 97  HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D Y+K G   +A RVF+ M   ++VSW  MV  F + G   +A++L   M+Q    P+
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPN 216

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           E T   +L++   L ++   + VHA+ +   ++  L ++ AL++ Y KC SI  A++   
Sbjct: 217 EFTFVKLLAASSFLGLN-YGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSK 275

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------- 476
              E D+  WT+II  +      +E+I  F +M +  V P++  +  +L+ACS       
Sbjct: 276 LTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDL 335

Query: 477 ----HGGLVSEGLR----YFNLMISDYH----------------ILPDSEHYTCLTDLLG 512
               H  +V  GL       N ++  Y                   P+   +T L     
Sbjct: 336 GKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFS 395

Query: 513 RVGLLVEAYDLLASMP---IEPRSDTLGAFIGAC----------KVHGSI 549
             GL  E+  +  +M    + P S TL   +GAC          K+HG I
Sbjct: 396 EHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYI 445



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 126/233 (54%), Gaps = 1/233 (0%)

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           K +Y     +V+ C +  S + G  IH  +IK  F  D+ ++ +L+ +Y K   + +A +
Sbjct: 13  KIEYSLLKDIVSFCNSR-SVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQ 71

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +FD M  ++V SW  ++  +G+ G+  EA++L   ML     P+E TL++ L SC +L  
Sbjct: 72  LFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALRE 131

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                +  A   K+G  +   + +ALI+ YSKCG    A + F  +   D+V+WT ++ +
Sbjct: 132 FNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSS 191

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +   G   ++++++ +M+   V P+   F+++L+A S  GL    L + +LM+
Sbjct: 192 FVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMM 244


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 305/553 (55%), Gaps = 3/553 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK   + G  + G+ +H  ++K GL     L N ++ +Y KC + +D  ++F  +   ++
Sbjct: 269 LKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDV 328

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V  + +IS     +        F +M    V+ +  TF  L     +  D+ + R +H+ 
Sbjct: 329 VHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAH 388

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I+K GF     V  A+V +Y K G V+DA   FD +   D+  WN ++S +      +  
Sbjct: 389 IVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHG 448

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  +  EG+  + +T+  ++  C +L   + G Q+H  V+K  F  D  V+  L+DM
Sbjct: 449 LRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDM 508

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y + G   +A  VFD +  ++V SW  ++  + +  +G +A++  R ML+ +  P++ TL
Sbjct: 509 YVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATL 568

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
           A+ LS C  L+      Q+H+Y IK+G  + + + +AL++ Y KCG++A A   F     
Sbjct: 569 ATSLSVCSDLACLGSGLQLHSYTIKSGWNSSV-VSSALVDMYVKCGNLADAEMLFDESDT 627

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            DLV W +II  YA HG   +++E F++M+     PD I F+ VLSACSH GL+ EG RY
Sbjct: 628 HDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRY 687

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F L+ S Y I P  EHY C+ D+L + G L EA  L+  MP+ P +      +GAC++HG
Sbjct: 688 FKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHG 747

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +I +A+ AAEKL E +P    +  L+SN+YA  + W DVA+LR M+ D    K PGCSWI
Sbjct: 748 NIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWI 807

Query: 608 EIAGEIHTFVSSD 620
           EI G++H F+S D
Sbjct: 808 EINGKLHVFLSQD 820



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 199/427 (46%), Gaps = 5/427 (1%)

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
           +A  V +  GF     Q+H+  +KL       + + ++  YV C   D  E+   +  VR
Sbjct: 169 KACTVGSDLGFT---PQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVR 225

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           + V+WN L++     G    V   F +++     +   T  ++L+ C++    + G+ +H
Sbjct: 226 SDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVH 285

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             ++K G   +  +++ L+++Y KC   EDA  VF  +   D+V  ++M+SC+  + +  
Sbjct: 286 GLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAP 345

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A  +F  M   G+K + +TF  L       G   L R IH  ++K  F     V  ++V
Sbjct: 346 EAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIV 405

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MY K G + DA   FD M   ++ SWNT++ GF    +    +++ ++++      ++ 
Sbjct: 406 GMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKY 465

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T   IL  C SL       QVHA  +K+G Q    +   L++ Y + G    A   F  +
Sbjct: 466 TYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRL 525

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           KE D+ +WT ++  YA     +++IE F  ML    RP+       LS CS    +  GL
Sbjct: 526 KERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGL 585

Query: 486 RYFNLMI 492
           +  +  I
Sbjct: 586 QLHSYTI 592



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 211/418 (50%), Gaps = 12/418 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL+  A    L++GK LH+ +++ G      L + +L++Y KC    D   +FD M 
Sbjct: 63  YAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMP 122

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V W  ++S I   G  G     F  M  + V  +     + L+AC    D+    +
Sbjct: 123 HRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQ 182

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  +K+    + +VSS+LV+ Y  CG V+ A R   +   R  V WN +++ YA +  
Sbjct: 183 VHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARD-- 240

Query: 244 GDGA--IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
           GD A  + VF+ +   G +   +T  +++  C  LG +K G+ +HGLVIK+  + D ++ 
Sbjct: 241 GDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN 300

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
             L++MY+K  + +DA  VF  +   +VV  + M+  F ++    EA  +   M      
Sbjct: 301 NCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK 360

Query: 362 PDEVT---LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           P++ T   LA + S  G +++    R +HA+ +K+G      + +A++  Y K G++  A
Sbjct: 361 PNQYTFVGLAIVASRTGDVNL---CRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDA 417

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +  F  ++ PD+ +W +++  +      +  + +F++++   V  +   ++ +L  C+
Sbjct: 418 ILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCT 475



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           ++ + L+ C  +  +  G+ LH+ +L+ G   + F+  +L+++Y KCG + DAR VFD +
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 224 LCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-K 280
             RD+V W  MVS  A+   GD   A+ +F  M  EG+  + F  ++ + +C T+GS   
Sbjct: 122 PHRDVVAWTAMVS--AITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKAC-TVGSDLG 178

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
              Q+H   +K     D  V++SLV+ Y   G +D A R       ++ VSWN ++  + 
Sbjct: 179 FTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYA 238

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           ++GD  + + +   +++      + TL ++L  C  L ++   + VH   IK G++    
Sbjct: 239 RDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRV 298

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N LI  YSKC S   A + F  + EPD+V  + +I  +  H ++ E+ ++F +M    
Sbjct: 299 LNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMG 358

Query: 461 VRPDSIAFLEVLSACSHGGLVS 482
           V+P+   F+ +    S  G V+
Sbjct: 359 VKPNQYTFVGLAIVASRTGDVN 380


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 173/587 (29%), Positives = 334/587 (56%), Gaps = 10/587 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL   ++ G L++GK +H+  +  G+   + + N ++ +Y +C       ++FD   
Sbjct: 117 YAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAAD 176

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--IEVG 181
            R+ V+WN L+SG +  G   ++   F  M    + L+     S+++ C  +DD  +++ 
Sbjct: 177 ERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIA 236

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS--CYA 239
             +H  ++K GF  + F++SA+V +Y K G + +A  +F  VL  ++V++N M++  C  
Sbjct: 237 AAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRD 296

Query: 240 LNCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
              +G      A+++++ ++  GM+   FTFSS++ +C   G  + G+QIHG V+K  F 
Sbjct: 297 EAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQ 356

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  + ++L+D+Y  +G ++D  R F  +  ++VV+W  M+ G  QN     A+ L  ++
Sbjct: 357 GDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHEL 416

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L     PD  T++S++++C SL+++    Q+  +A K+G   F ++ N+ I+ Y++ G +
Sbjct: 417 LGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDV 476

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A++ F  ++  D+V+W+++I ++A HG +++++  F +M+   V P+ I FL VL+AC
Sbjct: 477 HAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTAC 536

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SHGGLV EGL+Y+  M  +Y + P  +H TC+ DLLGR G L +A   +           
Sbjct: 537 SHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVI 596

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             + + +C++H  +   +  A++++EL+PS   +Y  + N+Y         +++R +M++
Sbjct: 597 WRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKE 656

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
               K PG SWIE+   +H+FV+ D+SHP++  +Y+ L  +   +++
Sbjct: 657 RGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDK 703



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 206/418 (49%), Gaps = 17/418 (4%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           +    +H+HI++      L L+N +L  Y  C+      +L DEM   N V++N LI   
Sbjct: 31  RHAAAVHAHIVRAHPSPSLFLRNTLLAAY--CRLGGHARRLLDEMPRTNAVSFNLLIDAY 88

Query: 140 INCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
              G    ++  + R      VR D  T+ + L AC +A  +  G+ +H+  +  G    
Sbjct: 89  SRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGG 148

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FVS++LV +Y +CG +  AR+VFD    RD V WN +VS Y      D  + VF +MR 
Sbjct: 149 VFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRR 208

Query: 257 EGMKGDYFTFSSLVNSCGTLGSS----KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            G+  + F   S++  C   GS      +   +HG V+K  FD DV +A+++V MYAK G
Sbjct: 209 SGIGLNSFALGSVIKCCA--GSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKG 266

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG------REAVKLLRDMLQGSFCPDEVT 366
            + +A  +F  +   NVV +N M+ G  ++         REA+ L  ++      P E T
Sbjct: 267 ALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFT 326

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            +S++ +C         +Q+H   +K+  Q    I +ALI+ Y   G +    +CF SV 
Sbjct: 327 FSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVP 386

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + D+VTWT++I     + L + ++ +F ++L   ++PD      V++AC+   +   G
Sbjct: 387 KQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTG 444


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 317/560 (56%), Gaps = 3/560 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A+ G L +G+  H+ ++KLGL   +   N ++ +Y K     D E++FD M  R+I
Sbjct: 127 LKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDI 186

Query: 130 VTWNTLISGIINCG-GNVTPYFRRMLLDNVRLDHITFNSL--LRACVQADDIEVGRRLHS 186
           V+WNT++ G ++ G G +     R + D +++ H +   +  L AC     + +GR +H 
Sbjct: 187 VSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHG 246

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           + ++ G   +  V ++LVD+Y KCG V  A  VF ++  R +V WN M+  YALN     
Sbjct: 247 YAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVD 306

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A   F  MR++G + +  T  +L+ +C    SS  GR +H  V+++ F   V++ T+L++
Sbjct: 307 AFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLE 366

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K G ++ + ++F  +T K +VSWN M+  +      +EA+ L  ++L     PD  T
Sbjct: 367 MYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFT 426

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + +++ +   L    + +Q+H+Y +K G      I NA+++ Y++CG+I  + + F  + 
Sbjct: 427 MTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMP 486

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D+++W +II  YA HG  K ++E+F++M    + P+   F+ VL+ACS  GL +EG +
Sbjct: 487 GKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWK 546

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
            FN M  +Y ++P  EHY C+TDLLGR G L E    + +MPI P S   G+ + A +  
Sbjct: 547 EFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTASRNK 606

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
             I +A++AAE++ +LE +    Y ++S++YA    W DV R+R +M++    +    S 
Sbjct: 607 NDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTEARSL 666

Query: 607 IEIAGEIHTFVSSDRSHPQA 626
           +E+  +  +FV+ D SHPQ+
Sbjct: 667 VELNNKECSFVNGDMSHPQS 686



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 171/326 (52%), Gaps = 1/326 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           +R ML    R D  TF  +L+ C +A  +  GR  H+ ++K+G G + + +++LV LY K
Sbjct: 108 YRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAK 167

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSS 268
            G V DA RVFD +  RD+V WN MV  Y  N +G  A+A F  M      G D     +
Sbjct: 168 LGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIA 227

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            + +C    +  LGR+IHG  I+   + DV V TSLVDMY K GN+  A  VF  M  + 
Sbjct: 228 ALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRT 287

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VV+WN M+ G+  N    +A      M    F  + VT  ++L++C     S   R VHA
Sbjct: 288 VVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHA 347

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           Y ++      + +E AL+  Y K G +  + + FG + +  LV+W ++I AY +  + +E
Sbjct: 348 YVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQE 407

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +I +F ++L+  + PD      V+ A
Sbjct: 408 AIALFLELLNQPLYPDYFTMTTVVPA 433



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 155/306 (50%), Gaps = 2/306 (0%)

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +++A   F  V      L NVM+  +A   L   A+A +  M   G + D FTF  ++
Sbjct: 68  GRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVL 127

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
             C   G+   GR  H  VIK     DV  A SLV +YAK G + DA RVFDGM A+++V
Sbjct: 128 KCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIV 187

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           SWNTMV G+  NG G  A+   R+M        D V + + L++C   S     R++H Y
Sbjct: 188 SWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGY 247

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
           AI++G++  + +  +L++ Y KCG++  A   F  +    +VTW  +IG YA +    ++
Sbjct: 248 AIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDA 307

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
            + F +M     + + +  + +L+AC+       G R  +  +   H LP     T L +
Sbjct: 308 FDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFG-RSVHAYVVRRHFLPHVVLETALLE 366

Query: 510 LLGRVG 515
           + G+VG
Sbjct: 367 MYGKVG 372



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 2/229 (0%)

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+  +   G +D+A   F G+T       N M+ GF       +A+   R ML     P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T   +L  C       E R  HA  IK G+ A +   N+L+  Y+K G +  A + F
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDSIAFLEVLSACSHGGLV 481
             +   D+V+W +++  Y  +G+   ++  F +M     V  DS+  +  L+AC     +
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESAL 238

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           + G       I  + +  D +  T L D+  + G +  A ++ A MP+ 
Sbjct: 239 ALGREIHGYAIR-HGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLR 286


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 196/592 (33%), Positives = 310/592 (52%), Gaps = 38/592 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-N 128
           L+  +    L  GK +H + +K+ L   + +   ++ +Y KCK   + E LF  +  R N
Sbjct: 141 LRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKN 200

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            V W  +++G    G ++     F+ M    +  +H TF S+L AC        GR++H 
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHG 260

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            I+  GFG N +V SALVD+Y KCG +  AR + D +   D+V WN M+     +   + 
Sbjct: 261 CIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEE 320

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F+ M    ++ D FT+ S++ S  +  + K+G  +H L IK  FD    V+ +LVD
Sbjct: 321 ALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVD 380

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAK GN+  A  VF+ +  K+V+SW ++V G+  NG   +A++L  DM       D+  
Sbjct: 381 MYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFV 440

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +A + S+C  L++    RQVHA  IK+   + LS EN+LI  Y+KCG +  A++   S++
Sbjct: 441 VACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSME 500

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++++WT+II  YA                                     GLV  G  
Sbjct: 501 TRNVISWTAIIVGYA-----------------------------------QNGLVETGQS 525

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF  M   Y I P S+ Y C+ DLLGR G + EA  LL  M +EP +    + + AC+VH
Sbjct: 526 YFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVH 585

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G++ L + A + L++LEPS  + Y L+SN+++    W D A +R+ M+     + PG SW
Sbjct: 586 GNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSW 645

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           IE+  ++HTF+S DRSHP A  +Y+ +  +  L++E       N   ++MDE
Sbjct: 646 IEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDE 697



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 166/323 (51%), Gaps = 11/323 (3%)

Query: 27  YQNQTTTITNAQKHDRSVLSSQ----LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQG 82
           Y   T  +T   ++  S+ + Q    +RN G   ES H        A    + + F   G
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGM--ESNHFTFPSILTACTSISAYAF---G 255

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +Q+H  I+  G    + +Q+ ++ +Y KC        + D M + ++V WN++I G +  
Sbjct: 256 RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTH 315

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        F +M   ++R+D  T+ S+L++     ++++G  +HS  +K GF     VS
Sbjct: 316 GYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVS 375

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +ALVD+Y K G +  A  VF+++L +D++ W  +V+ Y  N   + A+ +F  MR   + 
Sbjct: 376 NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVD 435

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D F  + + ++C  L   + GRQ+H   IK S    +    SL+ MYAK G ++DA RV
Sbjct: 436 LDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRV 495

Query: 321 FDGMTAKNVVSWNTMVVGFGQNG 343
            D M  +NV+SW  ++VG+ QNG
Sbjct: 496 XDSMETRNVISWTAIIVGYAQNG 518



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 144/273 (52%), Gaps = 1/273 (0%)

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           ++  Y   G + +AR++F+E    + + W+ +VS Y  N      +  F+ M  +G K  
Sbjct: 74  MISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
            +T  S++ +C TL     G+ IH   IK   + ++ VAT LVDMY+K   + +A  +F 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 323 GMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
            +   KN V W  M+ G+ QNG+  +A++  ++M       +  T  SIL++C S+S   
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQVH   I +G    + +++AL++ Y+KCG +A A     +++  D+V W S+I    
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
            HG  +E++ +F KM +  +R D   +  VL +
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKS 346



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++  YA  GN+ +A ++F+     N ++W+++V G+ +NG   E ++    M      P 
Sbjct: 74  MISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           + TL S+L +C +LS+    + +H YAIK  ++A + +   L++ YSKC  +  A   F 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 424 SVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
           S+ +  + V WT+++  YA +G S ++I+ F++M +  +  +   F  +L+AC+     +
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GAFI 540
            G +    +I      P+    + L D+  + G L  A  +L +M I+   D +   + I
Sbjct: 254 FGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARMILDTMEID---DVVCWNSMI 309

Query: 541 GACKVHG 547
             C  HG
Sbjct: 310 VGCVTHG 316


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 299/542 (55%), Gaps = 2/542 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           LH  + KLG    + + N +L  Y K        ++F EM  R+ +T+N +I G    G 
Sbjct: 155 LHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGR 214

Query: 144 -GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
            G     F  M  + V   H TF+SLL       D+ +GR++H   ++     N FV++A
Sbjct: 215 HGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNA 274

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D Y KC  + D +++FDE+  RD V +NVM+S  + N  G  A+ +F  M+  G    
Sbjct: 275 LLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRR 334

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
              ++SL++  G L   K+GRQIH  +I     L+  V  +L+DMY+K G +D A  +F 
Sbjct: 335 TLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFA 394

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
             + K  +SW  ++ G  QNG   EA++L  DM +    PD  T +SI+ S  SL++   
Sbjct: 395 YKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGI 454

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            RQ+HAY  K+G    +   +AL++ Y+KCG +  A++ F  + E + +TW ++I AYA 
Sbjct: 455 GRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQ 514

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +G +K +I +F+ ML   + PD + FL VL+AC H GL  E ++YF+LM   Y + P  E
Sbjct: 515 YGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKE 574

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HY+C+ D LGR G   +   ++  MP E       + + +C+++G+  LA  AAEKL  +
Sbjct: 575 HYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTM 634

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
            P+    Y ++SN+YA    W   AR++K+MRD    K  G SW+EI  +I+ F S+D +
Sbjct: 635 VPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYMFSSNDHT 694

Query: 623 HP 624
           +P
Sbjct: 695 NP 696



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 208/424 (49%), Gaps = 17/424 (4%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            E   ++H  +S  L V+     L  G+Q+H   ++      + + N +L  Y KC +  
Sbjct: 227 REGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLG 286

Query: 116 DMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D+++LFDEM  R+ V++N +IS      CGG     FR M         + + SLL    
Sbjct: 287 DLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAG 346

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
               I++GR++H+ ++  G  L  FV +AL+D+Y KCG ++ A+ +F     +  + W  
Sbjct: 347 ALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTA 406

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +++    N   + A+ +F  MR  G+  D  T SS++ S  +L    +GRQ+H  + K  
Sbjct: 407 LITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSG 466

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
               V   ++L+DMYAK G +D+A R F+ M  KN ++WN ++  + Q G  + A+++  
Sbjct: 467 HMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFD 526

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            ML    CPD VT  S+L++CG   ++ E  +       + ++ + S+ +     YS   
Sbjct: 527 SMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYF-----DLMRYYYSM-SPWKEHYSCVI 580

Query: 414 SIAGALQCFGSVK--------EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
              G   CF  ++        E D + W+SI+ +   +G    +    EK+ +  V  D+
Sbjct: 581 DTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFT-MVPTDA 639

Query: 466 IAFL 469
            A++
Sbjct: 640 TAYV 643



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +N  +W  M+     +G G +AV L RDML +G   PD+VT+ ++L+  G     C+   
Sbjct: 100 RNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVLNVPG-----CDVGT 154

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           +H    K G  A + + N L++AY K G IA A + F  +   D +T+ ++I   +  G 
Sbjct: 155 LHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGR 214

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             E++E+F  M    V      F  +L+  +
Sbjct: 215 HGEALELFAAMRREGVDTSHFTFSSLLTVAT 245



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 46/255 (18%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+QLH+++ K G    +   + +L +Y KC   D+  + F+EM  +N +TWN +IS    
Sbjct: 455 GRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQ 514

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   N    F  ML   +  D +TF S+L AC      E   +    +++  + ++ + 
Sbjct: 515 YGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFD-LMRYYYSMSPWK 573

Query: 200 S--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
              S ++D  G+ G  +  ++V DE+   D                              
Sbjct: 574 EHYSCVIDTLGRAGCFDKIQKVIDEMPFED------------------------------ 603

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV---DMYAKNGNI 314
               D   +SS+++SC   G+  L      +  ++ F +    AT+ V   ++YAK GN 
Sbjct: 604 ----DPIIWSSILHSCRIYGNQDLAT----VAAEKLFTMVPTDATAYVILSNIYAKAGNW 655

Query: 315 DDACRVFDGMTAKNV 329
           + A RV   M  + V
Sbjct: 656 EGAARVKKIMRDRGV 670


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 284/503 (56%), Gaps = 7/503 (1%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           LF      N  ++N +I G+ N   +       +RRM    ++ D  T+N +  AC + +
Sbjct: 83  LFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLE 142

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           +I VGR +HS + KVG   +  ++ +L+ +Y KCG V  AR++FDE+  RD V WN M+S
Sbjct: 143 EIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMIS 202

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y+       A+ +F  M  EG + D  T  S++ +C  LG  + GR +  + I +   L
Sbjct: 203 GYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGL 262

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
              + + L+ MY K G++D A RVF+ M  K+ V+W  M+  + QNG   EA KL  +M 
Sbjct: 263 STFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEME 322

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    PD  TL+++LS+CGS+      +Q+  +A +  +Q  + +   L++ Y KCG + 
Sbjct: 323 KTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVE 382

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            AL+ F ++   +  TW ++I AYA  G +KE++ +F++M   +V P  I F+ VLSAC 
Sbjct: 383 EALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACV 439

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV +G RYF+ M S + ++P  EHYT + DLL R G+L EA++ +   P +P    L
Sbjct: 440 HAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIML 499

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPV-NYALVSNVYASERCWFDVARLRKMMRD 595
            A +GAC     + + + A   L+E++ +K   NY + SNV A  + W + A++R +MRD
Sbjct: 500 AAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRD 559

Query: 596 NCDHKVPGCSWIEIAGEIHTFVS 618
               K PGCSWIEI GE+  F++
Sbjct: 560 RGVVKTPGCSWIEIEGELMEFLA 582



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 203/404 (50%), Gaps = 38/404 (9%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK   +  G+ +HS + K+GL   + + + ++ +Y KC       KLFDE+  R+ V+WN
Sbjct: 139 AKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWN 198

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++ISG    G   +    FR+M  +    D  T  S+L AC    D+  GR L    +  
Sbjct: 199 SMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITK 258

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
             GL+ F+ S L+ +YGKCG ++ ARRVF++++ +D V W  M++ Y+ N     A  +F
Sbjct: 259 KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLF 318

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G+  D  T S+++++CG++G+ +LG+QI     + S   ++ VAT LVDMY K 
Sbjct: 319 FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKC 378

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G +++A RVF+ M  KN  +WN M+  +   G  +EA+ L   M   S  P ++T   +L
Sbjct: 379 GRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVL 435

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           S+C           VHA  +  G + F  + +                  FG V  P + 
Sbjct: 436 SAC-----------VHAGLVHQGCRYFHEMSS-----------------MFGLV--PKIE 465

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            +T+II   +  G+  E+ E  E+      +PD I    +L AC
Sbjct: 466 HYTNIIDLLSRAGMLDEAWEFMERFPG---KPDEIMLAAILGAC 506


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 302/547 (55%), Gaps = 35/547 (6%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADD 177
           +F+ ++  N + WNT+I G       V+     + + ++ L  +  TF  LL++C ++  
Sbjct: 20  VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD---------------- 221
              G+++H  +LK+GF L+ +V ++L+ +Y +   +EDA +VFD                
Sbjct: 80  FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITG 139

Query: 222 ---------------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
                          E+  +D+V WN M+S YA       A+ +F  M    ++ D  T+
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
            +++++C   GS +LGRQ+H  V    FD ++ +  +L+D+Y+K G ++ AC +F G++ 
Sbjct: 200 VTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSY 259

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           K+V+SWNT++ G+      +EA+ L ++ML+    P++VT+ S+L +C  L      R +
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWI 319

Query: 387 HAYAIK--NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           H Y  K   GV    S+  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG
Sbjct: 320 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 379

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            +  S ++F +M    + PD I F+ +LSACSH G++  G   F  M  DY + P  EHY
Sbjct: 380 RADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHY 439

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+ DLLG  GL  EA +++ +M +EP      + + ACK+HG++ LA+  A+ L+++EP
Sbjct: 440 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEP 499

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
             P +Y L+SN+YAS   W DVAR+R ++   C  KVPGCS IE+   +  FV  D+ HP
Sbjct: 500 ENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHP 559

Query: 625 QAVHMYA 631
           Q   +Y 
Sbjct: 560 QNREIYG 566



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 200/412 (48%), Gaps = 37/412 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK-------CKAFD------- 115
           LK  AK     +G+Q+H  ++KLG    L +   ++ +YV+        K FD       
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLD 156
                              +KLFDE+ V+++V+WN +ISG     C       F  M+  
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NVR D  T+ ++L AC  +  IE+GR++HS++   GF  N  + +AL+DLY KCG VE A
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F  +  +D++ WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310

Query: 277 GSSKLGRQIHGLVIKQSFDLD--VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+   +     + TSL+DMYAK G+I+ A +VF+ M  K++ SWN 
Sbjct: 311 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 370

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN- 393
           M+ GF  +G    +  L   M +    PD++T   +LS+C    +    R +     ++ 
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDY 430

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +   L     +I+     G    A +   +++ EPD V W S++ A   HG
Sbjct: 431 KMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 482



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 187/368 (50%), Gaps = 41/368 (11%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A  VF+ +   + ++WN M+  +AL+     ++ ++  M   G+  + +TF  L+ SC  
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV--------------- 320
             +   G+QIHG V+K  FDLD+ V TSL+ MY +N  ++DA +V               
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 321 ----------------FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
                           FD +  K+VVSWN M+ G+ + G  +EA++L  +M++ +  PDE
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 365 VTLASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
            T  ++LS+C   GS+ +    RQVH++   +G  + L I NALI+ YSKCG +  A   
Sbjct: 197 STYVTVLSACAHSGSIELG---RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +   D+++W ++IG Y    L KE++ +F++ML     P+ +  L VL AC+H G +
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 482 SEGLRYFNLMISDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
             G R+ ++ I      +   S   T L D+  + G +  A+ +  SM +     +  A 
Sbjct: 314 DIG-RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAM 371

Query: 540 IGACKVHG 547
           I    +HG
Sbjct: 372 IFGFAMHG 379



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y   L   A  G ++ G+Q+HS +   G  + L + N ++ +Y KC   +    LF  
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 124 MRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +  +++++WNTLI G   +N        F+ ML      + +T  S+L AC     I++G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 182 RRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           R +H +I K   G+    S  ++L+D+Y KCG +E A +VF+ +L + L  WN M+  +A
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 376

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           ++   D +  +F+ MR  G++ D  TF  L+++C   G   LGR I
Sbjct: 377 MHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHI 422


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/591 (31%), Positives = 322/591 (54%), Gaps = 38/591 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  + +H+ ++K GL N     +++L   +    FD +     +F+ ++  N++ WNT+
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTM 74

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             G       V+     + + ++ L  +  TF  LL++C +    + G+++H  +LK+G+
Sbjct: 75  FRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGY 134

Query: 194 GLNCFVSSALVDLYGKCG-------------------------------FVEDARRVFDE 222
            L+ +V ++L+ +Y K G                               ++E A+++FDE
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDE 194

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +D+V WN ++S YA       A+ +F  M    +K D  T  ++V++C   GS +LG
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLG 254

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  +       ++ +  +L+D+Y+K G ++ AC +F G++ K+V+SWNTM+ G+   
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLS 400
              +EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y  K   GV    S
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASS 374

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  +LI+ Y+KCG I  A Q F S+    L    ++I  +A HG +  + ++F +M  + 
Sbjct: 375 LRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD I F+ +LSACSH G++  G R F  M  +Y I P  EHY C+ DLLG +GL  EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEA 494

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++ +M +EP      + + ACK+HG++ L +  A+KL+++EP  P +Y L+SN+YA+ 
Sbjct: 495 EEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATA 554

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
             W +VA +R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y 
Sbjct: 555 GRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 199/397 (50%), Gaps = 40/397 (10%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD---LYGKCGFVEDARRVFDEV 223
           SLL  C     + +   +H+ ++K G     +  S L++   L      +  A  VF+ +
Sbjct: 7   SLLHNCKTLQSLRI---IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              +L++WN M   +AL+     AI ++  M   G+  + +TF  L+ SC  L  SK G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG-------------------- 323
           QIHG V+K  ++LD+ V TSL+ MY KNG   DA +VFDG                    
Sbjct: 124 QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 324 -----------MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
                      +  K+VVSWN ++ G+   G+ +EA+ L ++M++ +  PDE T+ +++S
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C         RQVH++   +G+ + L I NALI+ YSKCG +  A   F  +   D+++
Sbjct: 244 ACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVIS 303

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++IG Y    L KE++ +F++ML     P+ +  L +L AC+  G +  G R+ ++ I
Sbjct: 304 WNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG-RWIHVYI 362

Query: 493 SDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
                 +   S   T L D+  + G +  A+ +  SM
Sbjct: 363 DKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 202/412 (49%), Gaps = 37/412 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK    ++G+Q+H H++KLG    L +   ++ +YVK        K FD       
Sbjct: 110 LKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDV 169

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLD 156
                              +K+FDE+ V+++V+WN +ISG  + G N      F+ M+  
Sbjct: 170 VSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT 229

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NV+ D  T  +++ AC Q+  I++GR++HS+I   G G N  + +AL+DLY KCG VE A
Sbjct: 230 NVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA 289

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F  +  +D++ WN M+  Y    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 290 CGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQL 349

Query: 277 GSSKLGRQIHGLVIKQSFDLDVL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+   GR IH  + K+   +     + TSL+DMYAK G+I+ A +VF+ M  + + + N 
Sbjct: 350 GAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNA 409

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN- 393
           M+ GF  +G    A  +   M +    PD++T   +LS+C    +    R++     +N 
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNY 469

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
            +   L     +I+     G    A +   ++  EPD V W S++ A   HG
Sbjct: 470 KITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHG 521


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 320/570 (56%), Gaps = 11/570 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           +  G  +    +H  ++KLG    N L + +  + +Y +    +  +K+FD    RN   
Sbjct: 221 SSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEV 280

Query: 132 WNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           WNT+IS  +        +  +F+ +  ++  +D +T  S + A       E+  +LH+F+
Sbjct: 281 WNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFV 340

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +K        V +AL+ +Y +C  ++ + ++FD +  +D+V WN M+S +  N L D A+
Sbjct: 341 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 400

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M+ + +  D  T ++L+++   L +  +G+Q HG +++     + +  + L+DMY
Sbjct: 401 MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM-DSYLIDMY 459

Query: 309 AKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           AK+G I+ A  VF+   +  ++  +WN+M+ G+ QNG   +A  +LR ML     P+ VT
Sbjct: 460 AKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVT 519

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           LASIL +C         +Q+H ++I+N +   + +  ALI+ YSK GSIA A   F    
Sbjct: 520 LASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN 579

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E  +VT++++I  Y  HG+ + ++ +F +M    ++PD++  + VLSACS+ GLV EGL+
Sbjct: 580 EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 639

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR-SDTLGAFIGACKV 545
            F  M + Y+I P +EH+ C+ D+LGR G + +AY+ +  +  +    +  G+ + AC++
Sbjct: 640 IFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRI 699

Query: 546 HGSIGLAKWAAEKLLELEP--SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           H    L K  A+KLLE+E    K   + L+SN+YA ER W +V  +RK MR+    K  G
Sbjct: 700 HKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETG 759

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            SWIEIAG ++ F S DR HPQ+  +Y+ML
Sbjct: 760 SSWIEIAGYMNHFASKDRKHPQSDQIYSML 789



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 214/439 (48%), Gaps = 21/439 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF----------- 114
           YS  LK  A    L  GK +H+H ++  +     + N +L++Y  C +            
Sbjct: 99  YSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYS 158

Query: 115 --DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLR 170
             D + K+FD MR R +V WNTLI+  +           F  M+   ++   ++F ++  
Sbjct: 159 RCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFP 218

Query: 171 ACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           A     D +    +H  ++K+G  +  + +V S+ + +Y + G +E A++VFD  L R+ 
Sbjct: 219 AFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNT 278

Query: 229 VLWNVMVSCYALNCLG-DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            +WN M+S +  N    +G    F  +  E    D  T  S +++   L   +L  Q+H 
Sbjct: 279 EVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHA 338

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            VIK      V V  +L+ MY++  +ID + ++FD M  K+VVSWNTM+  F QNG   E
Sbjct: 339 FVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDE 398

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+ L  +M +     D VT+ ++LS+   L      +Q H Y ++NG+Q F  +++ LI+
Sbjct: 399 ALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMDSYLID 457

Query: 408 AYSKCGSIAGALQCFGS--VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
            Y+K G I  A   F      E D  TW S++  Y  +GL  ++  +  +ML   V P+ 
Sbjct: 458 MYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNV 517

Query: 466 IAFLEVLSACSHGGLVSEG 484
           +    +L AC+  G +  G
Sbjct: 518 VTLASILPACNPSGYIDWG 536



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 199/386 (51%), Gaps = 16/386 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A+  ++     +  +QLH+ ++K     ++ + N ++ +Y +C + D   K+FD M  ++
Sbjct: 320 AISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKD 379

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+WNT+IS  +  G N      F  M   ++ +D +T  +LL A     + ++G++ H 
Sbjct: 380 VVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHG 439

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLG 244
           ++L+ G      + S L+D+Y K G +E A+ VF++     RD   WN M+S Y  N L 
Sbjct: 440 YLLRNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLV 498

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D A  +   M  + +  +  T +S++ +C   G    G+Q+HG  I+   D +V VAT+L
Sbjct: 499 DQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATAL 558

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K+G+I  A  VF     K++V+++TM++G+GQ+G G  A+ +   M +    PD 
Sbjct: 559 IDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDA 618

Query: 365 VTLASILSSCGSLSISCETRQVH-----AYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           VTL ++LS+C    +  E  Q+       Y I+   + F  + + L     + G +  A 
Sbjct: 619 VTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADML----GRAGRVDKAY 674

Query: 420 QCFGSVKEPDLV--TWTSIIGAYAFH 443
           +    + E   V   W S++ A   H
Sbjct: 675 EFVIGLGEKGNVMEIWGSLLAACRIH 700



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 228/489 (46%), Gaps = 54/489 (11%)

Query: 119 KLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDN--VRLDHITFNSLLRACVQ 174
           +LFD +   + V WNT+I G++  N       ++  M   +  V+ D  T++S+L+AC  
Sbjct: 49  QLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACAD 108

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED-------------ARRVFD 221
             ++ VG+ +H+  L+     +  V ++L+++Y  C                   R+VFD
Sbjct: 109 TRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFD 168

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  R +V WN +++ Y        A+  F++M   G+K    +F ++  +  +LG  K 
Sbjct: 169 TMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKN 228

Query: 282 GRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
              +HG+++K    +  D+ V +S + MYA+ G ++ A +VFD    +N   WNTM+  F
Sbjct: 229 ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAF 288

Query: 340 GQNGDGREAVKLLRDMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            QN    E ++L    ++      DEVTL S +S+   L       Q+HA+ IKN     
Sbjct: 289 VQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQ 348

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + NALI  YS+C SI  + + F ++ E D+V+W ++I A+  +GL+ E++ +F +M  
Sbjct: 349 VCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKK 408

Query: 459 HAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY-------------------- 487
             +  DS+    +LSA S           HG L+  G+++                    
Sbjct: 409 QDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAA 468

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACK 544
            N+    +    D   +  +     + GL+ +A+ +L  M    + P   TL + + AC 
Sbjct: 469 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 528

Query: 545 VHGSIGLAK 553
             G I   K
Sbjct: 529 PSGYIDWGK 537



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 132/280 (47%), Gaps = 18/280 (6%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG--MKGDYFTFSSLVNSC 273
           AR++FD +     VLWN ++     N   D A+  ++ M+     +K D +T+SS++ +C
Sbjct: 47  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 106

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA------KNGNI-------DDACRV 320
               +  +G+ +H   ++   +   +V  SL++MY+       +G +       D   +V
Sbjct: 107 ADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 166

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD M  + VV+WNT++  + +     EAVK    M++    P  V+  ++  +  SL   
Sbjct: 167 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDF 226

Query: 381 CETRQVHAYAIKNGVQAF--LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                VH   +K G +    L + ++ I  Y++ G +  A + F +  E +   W ++I 
Sbjct: 227 KNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMIS 286

Query: 439 AYAFHGLSKESIEV-FEKMLSHAVRPDSIAFLEVLSACSH 477
           A+  +  S E I++ F+ + S     D +  L  +SA SH
Sbjct: 287 AFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASH 326



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 30/208 (14%)

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP----DEV 365
           + G +  A ++FD +   + V WNT+++G   N    EA+    +M   S  P    D  
Sbjct: 40  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSS--PQVKCDSY 97

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-------IAGA 418
           T +S+L +C         + VHA+ ++  +     + N+L+N YS C S       ++G 
Sbjct: 98  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 157

Query: 419 LQC------FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
            +C      F ++++  +V W ++I  Y       E+++ F  M+   ++P  ++F+ V 
Sbjct: 158 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 217

Query: 473 SACS-----------HGGLVSEGLRYFN 489
            A S           HG LV  G  Y N
Sbjct: 218 PAFSSLGDFKNANVVHGMLVKLGSEYVN 245


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 212/707 (29%), Positives = 365/707 (51%), Gaps = 78/707 (11%)

Query: 23  TPALYQNQTTTITNAQKH-DRSV-LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQ 80
           +PA++ N        + H DR++ +S ++  +GT  +     H     ALK   +     
Sbjct: 112 SPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD-----HFTLPYALKACGELPSYC 166

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR---VRNIVTWNTLIS 137
            G+ LH  I   G  + + + N ++ +Y +C + +D   +FDE+    + ++++WN++++
Sbjct: 167 CGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVA 226

Query: 138 GIINCGGNVTPY--FRRMLL------DNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
             +      T    F  M +       N R D I+  ++L AC     +   + +HS+ +
Sbjct: 227 AHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAI 286

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           + G   + FV +AL+D Y KCG + DA +VF+ +  +D+V WN MV+ Y  +     A  
Sbjct: 287 RNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFE 346

Query: 250 VFNLMRLEGMKGDYFTFS-----------------------------------SLVNSCG 274
           +F  MR E +  D  T+S                                   SL+++C 
Sbjct: 347 LFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACA 406

Query: 275 TLGSSKLGRQIHGLVIKQSF------------DLDVLVATSLVDMYAKNGNIDDACRVFD 322
           +LG+   G +IH   +K+                D++V  +L+DMY+K  +   A  +FD
Sbjct: 407 SLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFD 466

Query: 323 GMT--AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC--PDEVTLASILSSCGSLS 378
            +    +NVV+W  M+ G+ Q GD  +A+K+  +M+   +   P+  T++ IL +C  L+
Sbjct: 467 SIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLA 526

Query: 379 ISCETRQVHAYAIKNGV--QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                +Q+HAY  ++     +   + N LI+ YSKCG +  A   F S+ + + V+WTS+
Sbjct: 527 ALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSM 586

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           +  Y  HG  KE++++F+KM      PD I+FL +L ACSH G+V +GL YF++M  DY 
Sbjct: 587 MSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYD 646

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           ++  +EHY C+ DLL R G L +A+  +  MP+EP +    A + AC+VH ++ LA++A 
Sbjct: 647 VVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYAL 706

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
            KL+ ++     +Y L+SN+YA+ R W DVAR+R++M+ +   K PGCSW++      +F
Sbjct: 707 NKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASF 766

Query: 617 VSSDRSHPQAVHMYAML------CTVFGLMEENNVSGHCNVLDKEMD 657
              DRSHP +  +Y++L        V G + E N + H +V D+E +
Sbjct: 767 FVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALH-DVDDEEKN 812



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/494 (28%), Positives = 237/494 (47%), Gaps = 65/494 (13%)

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
           SL   V+  Y+ C A  D   + + +     V WN L+   I  G          RML  
Sbjct: 84  SLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRA 143

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
             + DH T    L+AC +      GR LH  I   GF  N FV +ALV +Y +CG +EDA
Sbjct: 144 GTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 217 RRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRL------EGMKGDYFTFS 267
             VFDE+  +   D++ WN +V+ +        A+ +F+ M +         + D  +  
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           +++ +C +L +    ++IH   I+     D  V  +L+D YAK G+++DA +VF+ M  K
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 328 NVVSWNTMVVGFGQNGD-----------------------------------GREAVKLL 352
           +VVSWN MV G+ Q+G+                                    +EA+   
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF------------LS 400
           + M+     P+ VT+ S+LS+C SL    +  ++HAY++K  + +             L 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 401 IENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + NALI+ YSKC S   A   F S+  +E ++VTWT +IG YA +G S +++++F +M+S
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 459 --HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGRV 514
             +AV P++     +L AC+H   +  G +  +  ++ +H    S ++   CL D+  + 
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMG-KQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 515 GLLVEAYDLLASMP 528
           G +  A ++  SMP
Sbjct: 563 GDVDTARNVFDSMP 576



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 174/346 (50%), Gaps = 50/346 (14%)

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS++     G      + +V  Y  CG  +DA  V + V     V WN++V  +      
Sbjct: 77  HSYVSPKSLG------TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHL 130

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D AI V   M   G K D+FT    + +CG L S   GR +HGL+    F+ +V V  +L
Sbjct: 131 DRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNAL 190

Query: 305 VDMYAKNGNIDDACRVFDGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDM------ 355
           V MY++ G+++DA  VFD +T K   +V+SWN++V    +  + R A++L  +M      
Sbjct: 191 VAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHE 250

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
              +   D +++ +IL +C SL    + +++H+YAI+NG  A   + NALI+ Y+KCGS+
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSM 310

Query: 416 AGALQCFGSVKEPDLV-----------------------------------TWTSIIGAY 440
             A++ F  ++  D+V                                   TW+++I  Y
Sbjct: 311 NDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGY 370

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           A  G S+E+++ F++M+     P+S+  + +LSAC+  G +S+G+ 
Sbjct: 371 AQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGME 416


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/484 (37%), Positives = 271/484 (55%), Gaps = 2/484 (0%)

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           +ML      +  TF    ++C        G +LH  ++K G     FV ++L+ +Y KC 
Sbjct: 46  QMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCS 105

Query: 212 FVEDARRVFDEVL-CRDL-VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
            +  AR+VFDE    R+L V +N +++ Y+LN     A+ +F  MR EG+  +  T   L
Sbjct: 106 TIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGL 165

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           +  C        G  +H   ++   D D+ V   L+ MY + G++D A ++FDGM  K +
Sbjct: 166 IPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGL 225

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           ++WN M+ G+ QNG     + L R M      PD VTL  +LSSC  L      R+V   
Sbjct: 226 ITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQR 285

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
              +G      ++NALIN Y++CG++  A   F  + E ++++WT+II  Y  HG  + +
Sbjct: 286 IELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELA 345

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
           +++F++M+S    PD  AF+ VLSACSH GL  +GL YF  M  DY + P  EHY+C+ D
Sbjct: 346 VQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVD 405

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569
           LLGR G L EA  L+ SM +EP     GA +GACK+H ++ LA+ A EK++E EP+    
Sbjct: 406 LLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGY 465

Query: 570 YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
           Y L+SN+++       + R+R MMR+    K PGCS++E  G IH F++ DR+HPQA  +
Sbjct: 466 YVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEI 525

Query: 630 YAML 633
           Y ML
Sbjct: 526 YHML 529



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 214/427 (50%), Gaps = 17/427 (3%)

Query: 58  STHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           S  S ++F +  A K  A       G QLH H++K G   +  +Q  ++ +Y KC     
Sbjct: 50  SGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIAS 109

Query: 117 MEKLFDE-MRVRNI-VTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
             K+FDE    RN+ V +N LI+G  + +   +    FR+M  + V ++ +T   L+  C
Sbjct: 110 ARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVC 169

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                +  G  LH+  ++ G   +  V + L+ +Y +CG V+ AR++FD +  + L+ WN
Sbjct: 170 AGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWN 229

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M+S YA N L    + ++  M   G+  D  T   +++SC  LG+   GR++   +   
Sbjct: 230 AMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELS 289

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            F  +  +  +L++MYA+ GN+  A  +FDGMT KNV+SW  ++ G+G +G G  AV+L 
Sbjct: 290 GFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLF 349

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGVQAFLSIENALIN 407
            +M+     PD     S+LS+C    ++ +     T     Y ++ G + +    + +++
Sbjct: 350 DEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHY----SCVVD 405

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
              + G +  A +  GS+  EPD   W +++GA   H   + +   FEK++     P +I
Sbjct: 406 LLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIE--FEPTNI 463

Query: 467 AFLEVLS 473
            +  +LS
Sbjct: 464 GYYVLLS 470



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 158/326 (48%), Gaps = 8/326 (2%)

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN  +   A       A+ ++  M   G   + FTF     SC +L     G Q+HG VI
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFD-GMTAKNV-VSWNTMVVGFGQNGDGREA 348
           K   + +  V TSL+ MY K   I  A +VFD    ++N+ V +N ++ G+  N    +A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSC-GSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           V L R M +     + VT+  ++  C G + +   T  +HA +++ G+   LS+ N L+ 
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGT-SLHACSVRFGLDGDLSVGNCLLT 202

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y +CGS+  A + F  + E  L+TW ++I  YA +GL+   ++++ KM    + PD + 
Sbjct: 203 MYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVT 262

Query: 468 FLEVLSACSHGGLVSEGLRYFN-LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            + VLS+C+H G  + G      + +S +   P  ++   L ++  R G LV+A  +   
Sbjct: 263 LVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDG 320

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLA 552
           M  E    +  A I    +HG   LA
Sbjct: 321 M-TEKNVISWTAIIAGYGMHGQGELA 345



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 2/150 (1%)

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
             SWN  +    +    +EA+ L   ML     P+  T      SC SLS+     Q+H 
Sbjct: 21  TASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHG 80

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD--LVTWTSIIGAYAFHGLS 446
           + IK G +    ++ +LI+ Y KC +IA A + F          V + ++I  Y+ +   
Sbjct: 81  HVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRF 140

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            +++ +F +M    V  +++  L ++  C+
Sbjct: 141 SDAVLLFRQMRKEGVSVNAVTMLGLIPVCA 170


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 302/550 (54%), Gaps = 5/550 (0%)

Query: 84  QLHSHIMKLGLCNK-LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           QLH+  ++LGL +  +     ++H Y++     +  ++FDEM  R++  WN ++SG+   
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 143 --GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
               +      RM+ + V  D +T +S+L  CV   D  +   +H + +K G     FV 
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVC 206

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+D+YGK G + +A  VF  +  RDLV WN ++S          A+ +F+ M   G+ 
Sbjct: 207 NALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC 266

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACR 319
            D  T  SL ++    G     + +H  V ++ +D+ D++   ++VDMYAK   ID A +
Sbjct: 267 PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK 326

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLS 378
           VFD +  ++VVSWNT++ G+ QNG   EA+++  DM       P + T  S+L +   L 
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLG 386

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              +  ++HA +IK G+   + +   LI+ Y+KCG +  A+  F  +       W +II 
Sbjct: 387 GLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIA 446

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
               HG   +++ +F +M    ++PD + F+ +L+ACSH GLV +G  +F+LM + Y I+
Sbjct: 447 GLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIV 506

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P ++HYTC+ D+LGR G L EA++ + SMPI+P S   GA +GAC++HG++ + K A++ 
Sbjct: 507 PIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQN 566

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L EL+P     Y L+SN+YA    W  V  +R ++R     K PG S +E+ G +  F S
Sbjct: 567 LFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYS 626

Query: 619 SDRSHPQAVH 628
             ++ P   H
Sbjct: 627 GTQTEPHPQH 636



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 7/244 (2%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
            T IT   ++  +  + ++ N    HE        +   L   +  G LQQG ++H+  +
Sbjct: 340 NTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSI 399

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTP 148
           K GL   + +   ++ +Y KC    +   LF+ M  R+   WN +I+  G+   G     
Sbjct: 400 KTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALS 459

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDL 206
            F +M  + ++ DH+TF SLL AC  A  ++ GR     +  V +G+       + +VD+
Sbjct: 460 LFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTV-YGIVPIAKHYTCMVDM 518

Query: 207 YGKCGFVEDARRVFDEVLCR-DLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
            G+ G +++A      +  + D  +W  ++ +C     +  G +A  NL  L+     Y+
Sbjct: 519 LGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 578

Query: 265 TFSS 268
              S
Sbjct: 579 VLMS 582


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 320/570 (56%), Gaps = 11/570 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           +  G  +    +H  ++KLG    N L + +  + +Y +    +  +K+FD    RN   
Sbjct: 197 SSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEV 256

Query: 132 WNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           WNT+IS  +        +  +F+ +  ++  +D +T  S + A       E+  +LH+F+
Sbjct: 257 WNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFV 316

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +K        V +AL+ +Y +C  ++ + ++FD +  +D+V WN M+S +  N L D A+
Sbjct: 317 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 376

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M+ + +  D  T ++L+++   L +  +G+Q HG +++     + +  + L+DMY
Sbjct: 377 MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM-DSYLIDMY 435

Query: 309 AKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           AK+G I+ A  VF+   +  ++  +WN+M+ G+ QNG   +A  +LR ML     P+ VT
Sbjct: 436 AKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVT 495

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           LASIL +C         +Q+H ++I+N +   + +  ALI+ YSK GSIA A   F    
Sbjct: 496 LASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN 555

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E  +VT++++I  Y  HG+ + ++ +F +M    ++PD++  + VLSACS+ GLV EGL+
Sbjct: 556 EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 615

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR-SDTLGAFIGACKV 545
            F  M + Y+I P +EH+ C+ D+LGR G + +AY+ +  +  +    +  G+ + AC++
Sbjct: 616 IFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRI 675

Query: 546 HGSIGLAKWAAEKLLELEP--SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           H    L K  A+KLLE+E    K   + L+SN+YA ER W +V  +RK MR+    K  G
Sbjct: 676 HKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETG 735

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            SWIEIAG ++ F S DR HPQ+  +Y+ML
Sbjct: 736 SSWIEIAGYMNHFASKDRKHPQSDQIYSML 765



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 214/439 (48%), Gaps = 21/439 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF----------- 114
           YS  LK  A    L  GK +H+H ++  +     + N +L++Y  C +            
Sbjct: 75  YSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYS 134

Query: 115 --DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLR 170
             D + K+FD MR R +V WNTLI+  +           F  M+   ++   ++F ++  
Sbjct: 135 RCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFP 194

Query: 171 ACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           A     D +    +H  ++K+G  +  + +V S+ + +Y + G +E A++VFD  L R+ 
Sbjct: 195 AFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNT 254

Query: 229 VLWNVMVSCYALNCLG-DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            +WN M+S +  N    +G    F  +  E    D  T  S +++   L   +L  Q+H 
Sbjct: 255 EVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHA 314

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            VIK      V V  +L+ MY++  +ID + ++FD M  K+VVSWNTM+  F QNG   E
Sbjct: 315 FVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDE 374

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+ L  +M +     D VT+ ++LS+   L      +Q H Y ++NG+Q F  +++ LI+
Sbjct: 375 ALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMDSYLID 433

Query: 408 AYSKCGSIAGALQCFGS--VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
            Y+K G I  A   F      E D  TW S++  Y  +GL  ++  +  +ML   V P+ 
Sbjct: 434 MYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNV 493

Query: 466 IAFLEVLSACSHGGLVSEG 484
           +    +L AC+  G +  G
Sbjct: 494 VTLASILPACNPSGYIDWG 512



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 199/386 (51%), Gaps = 16/386 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A+  ++     +  +QLH+ ++K     ++ + N ++ +Y +C + D   K+FD M  ++
Sbjct: 296 AISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKD 355

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+WNT+IS  +  G N      F  M   ++ +D +T  +LL A     + ++G++ H 
Sbjct: 356 VVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHG 415

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLG 244
           ++L+ G      + S L+D+Y K G +E A+ VF++     RD   WN M+S Y  N L 
Sbjct: 416 YLLRNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLV 474

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D A  +   M  + +  +  T +S++ +C   G    G+Q+HG  I+   D +V VAT+L
Sbjct: 475 DQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATAL 534

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K+G+I  A  VF     K++V+++TM++G+GQ+G G  A+ +   M +    PD 
Sbjct: 535 IDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDA 594

Query: 365 VTLASILSSCGSLSISCETRQVH-----AYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           VTL ++LS+C    +  E  Q+       Y I+   + F  + + L     + G +  A 
Sbjct: 595 VTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADML----GRAGRVDKAY 650

Query: 420 QCFGSVKEPDLV--TWTSIIGAYAFH 443
           +    + E   V   W S++ A   H
Sbjct: 651 EFVIGLGEKGNVMEIWGSLLAACRIH 676



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 228/489 (46%), Gaps = 54/489 (11%)

Query: 119 KLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDN--VRLDHITFNSLLRACVQ 174
           +LFD +   + V WNT+I G++  N       ++  M   +  V+ D  T++S+L+AC  
Sbjct: 25  QLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACAD 84

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED-------------ARRVFD 221
             ++ VG+ +H+  L+     +  V ++L+++Y  C                   R+VFD
Sbjct: 85  TRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFD 144

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  R +V WN +++ Y        A+  F++M   G+K    +F ++  +  +LG  K 
Sbjct: 145 TMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKN 204

Query: 282 GRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
              +HG+++K    +  D+ V +S + MYA+ G ++ A +VFD    +N   WNTM+  F
Sbjct: 205 ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAF 264

Query: 340 GQNGDGREAVKLLRDMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            QN    E ++L    ++      DEVTL S +S+   L       Q+HA+ IKN     
Sbjct: 265 VQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQ 324

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + NALI  YS+C SI  + + F ++ E D+V+W ++I A+  +GL+ E++ +F +M  
Sbjct: 325 VCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKK 384

Query: 459 HAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY-------------------- 487
             +  DS+    +LSA S           HG L+  G+++                    
Sbjct: 385 QDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAA 444

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACK 544
            N+    +    D   +  +     + GL+ +A+ +L  M    + P   TL + + AC 
Sbjct: 445 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 504

Query: 545 VHGSIGLAK 553
             G I   K
Sbjct: 505 PSGYIDWGK 513



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 132/280 (47%), Gaps = 18/280 (6%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG--MKGDYFTFSSLVNSC 273
           AR++FD +     VLWN ++     N   D A+  ++ M+     +K D +T+SS++ +C
Sbjct: 23  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 82

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA------KNGNI-------DDACRV 320
               +  +G+ +H   ++   +   +V  SL++MY+       +G +       D   +V
Sbjct: 83  ADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 142

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD M  + VV+WNT++  + +     EAVK    M++    P  V+  ++  +  SL   
Sbjct: 143 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDF 202

Query: 381 CETRQVHAYAIKNGVQAF--LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                VH   +K G +    L + ++ I  Y++ G +  A + F +  E +   W ++I 
Sbjct: 203 KNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMIS 262

Query: 439 AYAFHGLSKESIEV-FEKMLSHAVRPDSIAFLEVLSACSH 477
           A+  +  S E I++ F+ + S     D +  L  +SA SH
Sbjct: 263 AFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASH 302



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 30/208 (14%)

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP----DEV 365
           + G +  A ++FD +   + V WNT+++G   N    EA+    +M   S  P    D  
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSS--PQVKCDSY 73

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-------IAGA 418
           T +S+L +C         + VHA+ ++  +     + N+L+N YS C S       ++G 
Sbjct: 74  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133

Query: 419 LQC------FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
            +C      F ++++  +V W ++I  Y       E+++ F  M+   ++P  ++F+ V 
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 193

Query: 473 SACS-----------HGGLVSEGLRYFN 489
            A S           HG LV  G  Y N
Sbjct: 194 PAFSSLGDFKNANVVHGMLVKLGSEYVN 221


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 302/560 (53%), Gaps = 9/560 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QL S  +K GL N +   + +L VY KC    D  ++FD M  RN V+WN LI+G   
Sbjct: 112 GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTE 171

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   +    F  M  + +  D  TF SLL A V+     +  +LH  I+K G  L   V
Sbjct: 172 SGDMASALELFLEMEREGLAPDEATFASLLTA-VEGPSCFLMHQLHGKIVKYGSALGLTV 230

Query: 200 SSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLE 257
            +A +  Y +CG ++D+RR+FD +   RDL+ WN M+  Y  N + D A+  F  +M+  
Sbjct: 231 LNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQES 290

Query: 258 GMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---NGN 313
           G+  D ++F+S+++SC   G     GR IHGLVIK + +    V  +L+ MY +   N  
Sbjct: 291 GVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCM 350

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA + F+ +  K+ VSWN+M+ G+ Q+G   +A+K  R M   +   DE   ++ L S
Sbjct: 351 MEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRS 410

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L++    +Q+H   I +G  +   + ++LI  YSK G I  A + F    +   V W
Sbjct: 411 SSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW 470

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            ++I  YA HG ++    +F +ML      D I F+ ++++CSH GLV EG    N M +
Sbjct: 471 NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            Y +    EHY C  DL GR G L +A  L+ SMP EP +      +GAC++HG++ LA 
Sbjct: 531 KYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELAS 590

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             A  L   EP +   Y L+S++Y+    W D A ++++M+     KVPG SWIE+  E+
Sbjct: 591 DVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEV 650

Query: 614 HTFVSSDRSHPQAVHMYAML 633
           H+F + D+SHP+   +Y ML
Sbjct: 651 HSFNAEDKSHPKMDEIYEML 670



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 213/417 (51%), Gaps = 12/417 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCK--AFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           H+ ++K G+    +  NQ+L  Y +          ++FDE+  R+ V+WN L++     G
Sbjct: 14  HASLLKSGVAAP-TPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASG 72

Query: 144 GNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            +   +   R M    +  +     S LR+   A    +G +L S  LK G   N F +S
Sbjct: 73  AHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D+Y KCG V DAR+VFD +  R+ V WN +++ Y  +     A+ +F  M  EG+  
Sbjct: 133 ALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAP 192

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  TF+SL+ +     S  L  Q+HG ++K    L + V  + +  Y++ G++ D+ R+F
Sbjct: 193 DEATFASLLTAVEG-PSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIF 251

Query: 322 DGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLS- 378
           DG+   ++++SWN M+  +  NG   EA+K    M+Q S   PD  +  SI+SSC     
Sbjct: 252 DGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGH 311

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTS 435
              + R +H   IK+ ++    + NALI  Y++      +  A +CF S+   D V+W S
Sbjct: 312 DDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNS 371

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           ++  Y+ HGLS ++++ F  M S  VR D  AF   L + S   ++  G +   L+I
Sbjct: 372 MLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVI 428



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL+ S++   LQ GKQ+H  ++  G  +   + + ++ +Y K    DD  K F+E  
Sbjct: 404 FSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD 463

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V WN +I G    G   NV   F  ML     LDHITF  L+ +C  A  ++ G  
Sbjct: 464 KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSE 523

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
            L++   K G  L     +  VDLYG+ G ++ A+++ D +    D ++W  ++
Sbjct: 524 ILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/473 (37%), Positives = 274/473 (57%), Gaps = 1/473 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +  TF+S+L A      +  G++LHS I K GF  N FV +ALVD+Y KC  +  A RVF
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 68

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           D++  R+LV WN M+  +  N L D A+ VF +++R + +  +  + SS++++C  +G  
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 128

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             GRQ+HG+V+K        V  SL+DMY K    D+  ++F  +  ++VV+WN +V+GF
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 188

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QN    EA      M +    PDE + +++L S  SL+   +   +H   IK G    +
Sbjct: 189 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 248

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            I  +LI  Y+KCGS+  A Q F  +++ ++++WT++I AY  HG + + IE+FE MLS 
Sbjct: 249 CILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE 308

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + P  + F+ VLSACSH G V EGL +FN M   + + P  EHY C+ DLLGR G L E
Sbjct: 309 GIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDE 368

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A   + SMP++P     GA +GAC+ +G++ + + AAE+L E+EP  P NY L++N+   
Sbjct: 369 AKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTR 428

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
                +   +R++M  N   K PGCSWI++      F + DRSH  +  +Y M
Sbjct: 429 SGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKM 481



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 213/443 (48%), Gaps = 30/443 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L  SA    +  G+QLHS I K G    + +   ++ +Y KC       ++FD+M 
Sbjct: 13  FSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMP 72

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGR 182
            RN+V+WN++I G    N        F+ +L +   + + ++ +S+L AC     +  GR
Sbjct: 73  ERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGR 132

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H  ++K G     +V ++L+D+Y KC F ++  ++F  V  RD+V WNV+V  +  N 
Sbjct: 133 QVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQND 192

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A   F +MR EG+  D  +FS++++S  +L +   G  IH  +IK  +  ++ +  
Sbjct: 193 KFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG 252

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+ MYAK G++ DA +VF+G+   NV+SW  M+  +  +G   + ++L   ML     P
Sbjct: 253 SLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEP 312

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYS 410
             VT   +LS+C            H   ++ G+  F S++              +++   
Sbjct: 313 SHVTFVCVLSACS-----------HTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLG 361

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAF 468
           + G +  A +   S+  +P    W +++GA   +G  K   E  E++       P +   
Sbjct: 362 RAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVL 421

Query: 469 LEVLSACSHGGLVSEGLRYFNLM 491
           L   + C+  G + E      LM
Sbjct: 422 LA--NMCTRSGRLEEANEVRRLM 442


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 274/468 (58%), Gaps = 1/468 (0%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           + +D   +N+LL+ C     +  GR +H  +++  F  +  +++ L+++Y KCG +E+AR
Sbjct: 47  IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEAR 106

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           +VFD++  RD V W  ++S Y+ +     A+ +FN M   G   + FT SS++ +     
Sbjct: 107 KVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAER 166

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
               G Q+HG  +K  FD +V V ++L+D+Y + G +DDA  VFD + ++N VSWN ++ 
Sbjct: 167 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 226

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G  +     +A++L + ML+  F P   + AS+  +C S     + + VHAY IK+G + 
Sbjct: 227 GHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 286

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
                N L++ Y+K GSI  A + F  + + D+V+W S++ AYA HG   E++  FE+M 
Sbjct: 287 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMR 346

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              +RP+ I+FL VL+ACSH GL+ EG  Y+ LM  D  +L ++ HY  + DLLGR G L
Sbjct: 347 RGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVL-EAWHYVTIVDLLGRAGDL 405

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
             A   +  MPIEP +    A + AC++H +  L  +AAE + EL+P  P  + ++ N+Y
Sbjct: 406 NRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIY 465

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           AS   W D AR+RK M+++   K P CSW+EI   IH FV++D  HPQ
Sbjct: 466 ASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 513



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 207/385 (53%), Gaps = 9/385 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           FY+  LK    F  L QG+ +H H+++    + L + N +L++Y KC + ++  K+FD+M
Sbjct: 53  FYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKM 112

Query: 125 RVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             R+ VTW TLISG      +  P+     F +ML      +  T +S+++A        
Sbjct: 113 PERDFVTWTTLISGY---SQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC 169

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH F +K GF  N  V SAL+DLY + G ++DA+ VFD +  R+ V WN +++ +A
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 229

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
             C  + A+ +F  M  EG +  +F+++SL  +C + G  + G+ +H  +IK    L   
Sbjct: 230 RRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 289

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
              +L+DMYAK+G+I DA ++FD +  ++VVSWN+++  + Q+G G EAV    +M +G 
Sbjct: 290 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGG 349

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E++  S+L++C    +  E    +    K+G+         +++   + G +  AL
Sbjct: 350 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRAL 409

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFH 443
           +    +  EP    W +++ A   H
Sbjct: 410 RFIEEMPIEPTAAIWKALLNACRMH 434



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 189/397 (47%), Gaps = 38/397 (9%)

Query: 31  TTTITNAQKHDRS-----VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQL 85
           TT I+   +HDR      + +  LR   + +E T       S  +K +A       G QL
Sbjct: 121 TTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFT------LSSVIKAAAAERRGCCGHQL 174

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG-IINCGG 144
           H   +K G  + + + + +L +Y +    DD + +FD +  RN V+WN LI+G    CG 
Sbjct: 175 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGT 234

Query: 145 -NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
                 F+ ML +  R  H ++ SL  AC     +E G+ +H++++K G  L  F  + L
Sbjct: 235 EKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 294

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D+Y K G + DAR++FD +  RD+V WN +++ YA +  G+ A+  F  MR  G++ + 
Sbjct: 295 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNE 354

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            +F S++ +C   G    G   + L+ K    L+     ++VD+  + G+++ A R  + 
Sbjct: 355 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEE 414

Query: 324 MTAKNVVS-WNTMVVGFGQNGDGREAVKLLRDMLQGSFC--------PDE----VTLASI 370
           M  +   + W  ++           A ++ ++   G++         PD+    V L +I
Sbjct: 415 MPIEPTAAIWKALL----------NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 464

Query: 371 LSSCGSLSISCETRQ--VHAYAIKNGVQAFLSIENAL 405
            +S G  + +   R+    +   K    +++ IENA+
Sbjct: 465 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAI 501


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 288/509 (56%), Gaps = 4/509 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           LF+E+  R++VTW  +I G  +C      +  F  ML   V+ +  T +S+L+AC     
Sbjct: 65  LFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKA 124

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYG-KCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           +  G   HS   K G   + +V +AL+D+Y   C  ++DA  VF+++  +  V W  +++
Sbjct: 125 LSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIA 184

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            +     G   +  F  M LE +  + F+FS    +C ++ S   G+QIH  V K     
Sbjct: 185 GFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHC 244

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  V  S++DMY +   + DA R F  +T KN+++WNT++ G+ +  D  E++ L   M 
Sbjct: 245 DAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMG 303

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
              + P+  T  SI ++C +L++    +QVH   ++ G    +++ N+LI+ Y+KCGSI+
Sbjct: 304 SEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSIS 363

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            + + F  +   DLV+WT+++  Y  HG  KE++++F++M+   ++PD I F+ VL  CS
Sbjct: 364 DSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCS 423

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV +GL+YF  M+ DY+I PD E Y C+ DLLGR G + EA+ L+ +MP EP     
Sbjct: 424 HAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVW 483

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GACK +    L   AA+++L+  P+    Y L+S +YA+E  W + A++RK+M+  
Sbjct: 484 GALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGM 543

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              K  G SWIEI  E+++FV   +  P 
Sbjct: 544 NKKKEVGKSWIEIRNEVYSFVVGAKMGPH 572



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 210/396 (53%), Gaps = 28/396 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV-KCKAFDDMEKLFDEMR 125
           S  LK       L  G   HS   K G+   + +QN +L +Y   C   DD   +F+++ 
Sbjct: 113 SSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIP 172

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++  V+W TLI+G  + G   +    FR+MLL++V  +  +F+   RAC        G++
Sbjct: 173 LKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQ 232

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ + K G   +  V ++++D+Y +C ++ DA+R F E+  ++L+ WN +++ Y  +  
Sbjct: 233 IHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDS 292

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + ++++F  M  EG K + FTF+S+  +C  L     G+Q+HG ++++ FD +V +  S
Sbjct: 293 SE-SLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINS 351

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G+I D+ ++F  M  +++VSW TM++G+G +G G+EAVKL  +M+Q    PD
Sbjct: 352 LIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPD 411

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS------------IENALINAYSK 411
            +    +L  C            HA  +  G++ F S            I   +++   +
Sbjct: 412 RIVFMGVLCGCS-----------HAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGR 460

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLS 446
            G +  A Q   ++  EPD   W +++GA   + LS
Sbjct: 461 AGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLS 496



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 25/341 (7%)

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ L+  Y   G   +A  +F+E+  RD+V W  M+  +        A  +F+ M    +
Sbjct: 46  ATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEV 105

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN-GNIDDAC 318
           + + FT SS++ +C  + +   G   H L  K   D  V V  +L+DMYA +   +DDA 
Sbjct: 106 QPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDAL 165

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF+ +  K  VSW T++ GF   GDG   +   R ML     P+  + +    +C S+S
Sbjct: 166 SVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASIS 225

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                +Q+HA   K G+     + N++++ Y +C  +  A +CFG + E +L+TW ++I 
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY 487
            Y     S ES+ +F +M S   +P+   F  + +AC+           HGG+V  G   
Sbjct: 286 GYE-RSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
              +I+             L D+  + G + +++ L   MP
Sbjct: 345 NVALINS------------LIDMYAKCGSISDSHKLFCDMP 373



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 133/261 (50%), Gaps = 2/261 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A +  A       GKQ+H+ + K GL     + N +L +Y +C    D ++ F E+ 
Sbjct: 214 FSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELT 273

Query: 126 VRNIVTWNTLISGIINCGGNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +N++TWNTLI+G      + +   F +M  +  + +  TF S+  AC     +  G+++
Sbjct: 274 EKNLITWNTLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQV 333

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I++ GF  N  + ++L+D+Y KCG + D+ ++F ++  RDLV W  M+  Y  +  G
Sbjct: 334 HGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYG 393

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             A+ +F+ M   G++ D   F  ++  C   G    G +    ++   + + D  +   
Sbjct: 394 KEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRC 453

Query: 304 LVDMYAKNGNIDDACRVFDGM 324
           +VD+  + G +++A ++ + M
Sbjct: 454 VVDLLGRAGRVEEAFQLVENM 474


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/536 (36%), Positives = 308/536 (57%), Gaps = 8/536 (1%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLD- 156
           L   +L  Y +         LFDEM  R++V W T+ISG  +C      +  F  M+ + 
Sbjct: 46  LATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNG 105

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN-CFVSSALVDLYGKCGF-VE 214
           N   +  T +S+L+AC     +  GR +H   +K  F     +V +AL+D+Y  CG  + 
Sbjct: 106 NDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMR 165

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           DA  VF ++  +++V W  +++ Y     G+ A+ +F  M L+G+  +  + S  V +C 
Sbjct: 166 DACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACA 225

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           ++GS   GRQIH  VIK  F+ D+ V  S++DMY + G + +A + F+ MT K++++WNT
Sbjct: 226 SIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNT 285

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           ++ G+ +  D  E   +   M    F P+  T  S++++C + +     +QVH    + G
Sbjct: 286 LIAGY-ERSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRG 344

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +   L + NALI+ Y+KCG+I  + + F  +   +LV+WTS++  Y  HG  KE++E+F+
Sbjct: 345 LDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFD 404

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +M+   +RPD + F+ VL ACSH GLV +GLRY N MI+DYHI P+ E Y C+ DLLGR 
Sbjct: 405 EMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRP 464

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G + +AY L+ SMP        GA +GACK H    L K AA+K L L P+    Y ++S
Sbjct: 465 GRVEDAYQLIRSMPFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLS 524

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR--SHPQAVH 628
           N+YA+E  W + AR+RK+M+     KV G SWIE+  ++++FV  ++  SH + V+
Sbjct: 525 NIYAAEGKWGEAARMRKLMKRAGCRKVAGRSWIEVRNQVYSFVVGNKMGSHKEWVY 580



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 141/261 (54%), Gaps = 4/261 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S A++  A  G    G+Q+H+ ++K G  + L + N +L +Y +C    +  K F++M  
Sbjct: 218 SIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTE 277

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++++TWNTLI+G      ++ P+  F +M  +    +  TF SL+ AC  A  ++ G+++
Sbjct: 278 KDLITWNTLIAGYER-SDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQV 336

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I + G   N  +++AL+D+Y KCG + D+++ F E+ C +LV W  M+  Y  +  G
Sbjct: 337 HGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYG 396

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             A+ +F+ M   G++ D   F +++++C   G    G R I+ ++       +  +   
Sbjct: 397 KEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGC 456

Query: 304 LVDMYAKNGNIDDACRVFDGM 324
           +VD+  + G ++DA ++   M
Sbjct: 457 VVDLLGRPGRVEDAYQLIRSM 477



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ- 357
           ++AT L+  Y + G    A  +FD M  ++VV+W TM+ G+    +  +A  +  DM++ 
Sbjct: 45  ILATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKN 104

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCG-SI 415
           G+  P+  T++S+L +C  +      R VH  AIK   ++ F+ ++NAL++ Y+ CG  +
Sbjct: 105 GNDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGM 164

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML--SHAVRPDSIAFLEVLS 473
             A   F  +KE ++V+WT++I  Y   G    ++++F +ML    A+ P SI+    + 
Sbjct: 165 RDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISI--AVR 222

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           AC+  G  + G R  +  +  +    D      + D+  R G L EA      M
Sbjct: 223 ACASIGSQNFG-RQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDM 275



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 5/168 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-- 136
           LQ G+Q+H  I + GL   L L N ++ +Y KC    D +K F EM   N+V+W +++  
Sbjct: 330 LQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIG 389

Query: 137 SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHSFILKVGFGL 195
            G    G      F  M+   +R D + F ++L AC  A  ++ G R ++  I       
Sbjct: 390 YGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKP 449

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALN 241
           N  +   +VDL G+ G VEDA ++   +    D  +W  ++ +C A N
Sbjct: 450 NQEIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALLGACKAHN 497


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 313/582 (53%), Gaps = 4/582 (0%)

Query: 71  KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           K  AK   L   + +H+H++K    + + +Q  ++ +YVKC   DD   LFD+M VRNI 
Sbjct: 60  KACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIA 119

Query: 131 TWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           +WN +I G    G    V   F  M L   R D  T   L RA + A  +   + +H+  
Sbjct: 120 SWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIG 179

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNCLGDG 246
           ++ G   +  VS+  +  Y KCG ++ A+ VF  +    R  V WN +++CYA       
Sbjct: 180 IETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVD 239

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+  +  +  +G K D  T  SL++SC    +   G  IHG   +   D D+ +  +L+ 
Sbjct: 240 AVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLIS 299

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY++ G+I  A  +FDGM+ +  VSW  M+ G+ + G   +A+ L   M +    PD VT
Sbjct: 300 MYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVT 359

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + S++S CG          +  YA  + ++  + + NALI+ Y+KCGS+  A + F S+ 
Sbjct: 360 VLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLP 419

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
              +V+WT++I A A +G  +E++++F  +    + P++I FL VL AC HGG + +G  
Sbjct: 420 NRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRE 479

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
            F +M   Y I P  +HY+C+ DLLGR G L+EA +++  MP++P     GA +GACK+H
Sbjct: 480 CFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIH 539

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
            ++ + ++ +  L EL+P   V++  ++N+YAS   W +VA +RK MR N   K PG S 
Sbjct: 540 NNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSV 599

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           +++ G  H F   DRSH  ++ +Y  L  +   M++   S H
Sbjct: 600 VQVNGMSHVFFVEDRSHHDSLLIYEALGNLAMQMKQKEFSSH 641



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 213/427 (49%), Gaps = 6/427 (1%)

Query: 125 RVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           ++  +  WN+ I G +N G        F ++ L+ ++ ++ TF  L +AC +   +   +
Sbjct: 13  KLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQ 72

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H+ ++K  F  + +V +A+VD+Y KCG V+DA  +FD++  R++  WN M+  ++   
Sbjct: 73  IIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIG 132

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             D    +F  MRL G + D  T   L  +  +  S +  + +H + I+   D D  V+ 
Sbjct: 133 SLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSN 192

Query: 303 SLVDMYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           + +  Y+K G +  A  VF G+  TA++ VSWN+++  +   G   +AVK  + +L   F
Sbjct: 193 TWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGF 252

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD  T+ S+LSSC           +H +  + G  + +S+ N LI+ YS+CG I+ A  
Sbjct: 253 KPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATI 312

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +     V+WT++I  Y+  G   +++ +F  M     +PD +  L ++S C   G 
Sbjct: 313 LFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGA 372

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           +  G  + +   S + +  D      L D+  + G L +A ++  S+P      +  A I
Sbjct: 373 LGLG-HWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLP-NRTVVSWTAMI 430

Query: 541 GACKVHG 547
            AC ++G
Sbjct: 431 AACALNG 437



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 159/362 (43%), Gaps = 35/362 (9%)

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           L  WN  +           A+A+F+ ++L G++ + FTF  L  +C  L      + IH 
Sbjct: 17  LTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHT 76

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            V+K  F  D+ V T++VDMY K G +DDA  +FD M  +N+ SWN M++GF Q G    
Sbjct: 77  HVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDR 136

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
              L   M      PD  T+  +  +  S       + VHA  I+ G+ A  S+ N  I 
Sbjct: 137 VFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIA 196

Query: 408 AYSKCGSIAGALQCFGSVKEP--DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           AYSKCG +  A   F  +++     V+W S+I  YA  G   ++++ ++ +L    +PD+
Sbjct: 197 AYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDA 256

Query: 466 IAFLEVLSACS-----------HGGLVSEG----LRYFNLMISDYHILPDSEHYTCLTDL 510
              + +LS+C            HG     G    +   N +IS Y    D    T L D 
Sbjct: 257 STIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDG 316

Query: 511 L------------------GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           +                  GRV   +  ++ +     +P   T+ + I  C   G++GL 
Sbjct: 317 MSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLG 376

Query: 553 KW 554
            W
Sbjct: 377 HW 378


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 310/548 (56%), Gaps = 4/548 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   +K       +  G  +H    K G  +   +QN +L +Y+     +  + +FD M+
Sbjct: 116 YPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQ 175

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R +++WNT+I+G    NC  +    + RM+   V  D  T  S+L AC    ++E+GR 
Sbjct: 176 ERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGRE 235

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ + + GF  N  V +ALVD+Y KCG +++A  +   +  +D+V W  +++ Y LN  
Sbjct: 236 VHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGD 295

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +  +M+ EG+K +  + +SL+++CG+L     G+ +H   I+Q  + +V+V T+
Sbjct: 296 ARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETA 355

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MYAK    + + +VF G + K    WN ++ GF QN   REA++L + ML     PD
Sbjct: 356 LINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPD 415

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  S+L +   L+   +   +H Y I++G    L + + L++ YSKCGS+  A Q F 
Sbjct: 416 HATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFN 475

Query: 424 --SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
             S+K+ D++ W++II AY  HG  K ++++F +M+   V+P+ + F  VL ACSH GLV
Sbjct: 476 IISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLV 535

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
           +EG   FN M+  + I+   +HYTC+ DLLGR G L +AY+L+ +MPI P     GA +G
Sbjct: 536 NEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWGALLG 595

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC +H ++ L + AA    +LEP    NY L++ +YA+   W D  R+R M+ +    K+
Sbjct: 596 ACVIHENVELGEVAARWTFKLEPENTGNYVLLAKLYAAVGRWGDAERVRDMVNEVGLRKL 655

Query: 602 PGCSWIEI 609
           P  S IE+
Sbjct: 656 PAHSLIEV 663



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 217/397 (54%), Gaps = 3/397 (0%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           + K+LH+ I+ LG+ +  +L +++   Y +C        LFD++    + +WN ++   +
Sbjct: 29  ETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYV 88

Query: 141 NCGG--NVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
             G   +    F  ML     L D  T+  +++AC     I+VG  +H    K G+  + 
Sbjct: 89  QIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDT 148

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           FV + L+ +Y   G  E A+ VFD +  R ++ WN M++ Y  N   + A+ V+  M   
Sbjct: 149 FVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDV 208

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G++ D  T  S++ +CG L + +LGR++H LV ++ F  +++V  +LVDMY K G + +A
Sbjct: 209 GVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEA 268

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +  GM  K+VV+W T++ G+  NGD R A+ L   M      P+ V++AS+LS+CGSL
Sbjct: 269 WLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSL 328

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 + +HA+AI+  +++ + +E ALIN Y+KC     + + F    +     W +++
Sbjct: 329 VYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALL 388

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
             +  + L++E+IE+F++ML   V+PD   F  +L A
Sbjct: 389 SGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPA 425



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 2/246 (0%)

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           +++H L++         + + L   YA+  +   A  +FD ++   + SWN M+  + Q 
Sbjct: 31  KRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQI 90

Query: 343 GDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           G   +A+ L  +ML  G   PD+ T   ++ +CG LS+      +H    K G  +   +
Sbjct: 91  GRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFV 150

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           +N L+  Y   G    A   F  ++E  +++W ++I  Y  +  +++++ V+ +M+   V
Sbjct: 151 QNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGV 210

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD    + VL AC     V  G R  + ++ +     +      L D+  + G + EA+
Sbjct: 211 EPDCATVVSVLPACGLLKNVELG-REVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAW 269

Query: 522 DLLASM 527
            L   M
Sbjct: 270 LLAKGM 275



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H+ ++  L   A    LQQ   +H ++++ G   +L + + ++ +Y KC +     ++F+
Sbjct: 416 HATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFN 475

Query: 123 EMRVRN----IVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
            + +++    I +      G    G      F +M+   V+ +H+TF S+L AC  A  +
Sbjct: 476 IISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLV 535

Query: 179 EVGRRLHSFILKVGFGLNCFVS-----SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWN 232
             G  L +F+LK     +  +S     + ++DL G+ G + DA  +   + +  +  +W 
Sbjct: 536 NEGFSLFNFMLK----QHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWG 591

Query: 233 VMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQI 285
            ++ +C     +  G +A     +LE    G+Y   + L  + G  G ++  R +
Sbjct: 592 ALLGACVIHENVELGEVAARWTFKLEPENTGNYVLLAKLYAAVGRWGDAERVRDM 646



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           F        S+L    +     ET+++HA  +  G+ +  ++ + L   Y++C   + A 
Sbjct: 7   FATTAAQCESLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYAS 66

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHG 478
             F  + +P L +W +++  Y   G   +++ +F +ML S    PD   +  V+ AC   
Sbjct: 67  HLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDL 126

Query: 479 GLVSEGL 485
            L+  G+
Sbjct: 127 SLIDVGV 133


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/652 (31%), Positives = 333/652 (51%), Gaps = 99/652 (15%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H  ++K GL   + L N +++VY K        KLFDEM +R   +WNT++S     G 
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 145 ---------------------------NVTPYFRR------MLLDNVRLDHITFNSLLRA 171
                                      N+  Y +       M+ + +     T  ++L +
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
                 +E G+++HSFI+K+G   N  VS++L+++Y KCG    A+ VFD ++ RD+  W
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 232 NVMVSCYALNCLGDGAIAVF--------------------------------NLMRLEGM 259
           N M++ +      D A+A F                                 ++R   +
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D FT +S++++C  L    +G+QIH  ++   FD+  +V  +L+ MY++ G ++ A R
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 320 VFD----------GMTA-----------------------KNVVSWNTMVVGFGQNGDGR 346
           + +          G TA                       ++VV+W  M+VG+ Q+G   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYG 395

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA+ L R M+ G   P+  TLA++LS   SL+     +Q+H  A+K+G    +S+ NALI
Sbjct: 396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALI 455

Query: 407 NAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
             Y+K G+I  A + F  ++ E D V+WTS+I A A HG ++E++E+FE ML   +RPD 
Sbjct: 456 TMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I ++ V SAC+H GLV++G +YF++M     I+P   HY C+ DL GR GLL EA + + 
Sbjct: 516 ITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIE 575

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            MPIEP   T G+ + AC+VH +I L K AAE+LL LEP     Y+ ++N+Y++   W +
Sbjct: 576 KMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEE 635

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
            A++RK M+D    K  G SWIE+  ++H F   D +HP+   +Y  +  ++
Sbjct: 636 AAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIW 687



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 158/369 (42%), Gaps = 56/369 (15%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE------------------ 123
           GKQ+HSHI+  G      + N ++ +Y +C   +   +L ++                  
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357

Query: 124 ---------------MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFN 166
                          ++ R++V W  +I G    G  G     FR M+    R +  T  
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC- 225
           ++L        +  G+++H   +K G   +  VS+AL+ +Y K G +  A R FD + C 
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           RD V W  M+   A +   + A+ +F  M +EG++ D+ T+  + ++C   G    GRQ 
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537

Query: 286 HGLVIKQSFDLDVLVAT-----SLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVG- 338
             ++     D+D ++ T      +VD++ + G + +A    + M  + +VV+W +++   
Sbjct: 538 FDMMK----DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSAC 593

Query: 339 -FGQNGD----GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
              +N D      E + LL     G++      LA++ S+CG    + + R+        
Sbjct: 594 RVHKNIDLGKVAAERLLLLEPENSGAYS----ALANLYSACGKWEEAAKIRKSMKDGRVK 649

Query: 394 GVQAFLSIE 402
             Q F  IE
Sbjct: 650 KEQGFSWIE 658



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV-RNIVTWNTLISGI 139
            GKQ+H   +K G    +S+ N ++ +Y K        + FD +R  R+ V+W ++I  +
Sbjct: 431 HGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G        F  ML++ +R DHIT+  +  AC  A  +  GR+    +  V   +  
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPT 550

Query: 198 FVSSA-LVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCLGDGAIAVFNLM 254
               A +VDL+G+ G +++A+   +++ +  D+V W  ++S C     +  G +A   L+
Sbjct: 551 LSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLL 610

Query: 255 RLEGMK-GDYFTFSSLVNSCG 274
            LE    G Y   ++L ++CG
Sbjct: 611 LLEPENSGAYSALANLYSACG 631


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 288/509 (56%), Gaps = 4/509 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADD 177
           LF+E+  R++VTW  +I G  +C      +  F  ML   V+ +  T +S+L+AC     
Sbjct: 65  LFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKA 124

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYG-KCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           +  G   HS   K G   + +V +AL+D+Y   C  ++DA  VF+++  +  V W  +++
Sbjct: 125 LSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIA 184

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            +     G   +  F  M LE +  + F+FS    +C ++ S   G+QIH  V K     
Sbjct: 185 GFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHC 244

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  V  S++DMY +   + DA R F  +T KN+++WNT++ G+ +  D  E++ L   M 
Sbjct: 245 DAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMG 303

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
              + P+  T  SI ++C +L++    +QVH   ++ G    +++ N+LI+ Y+KCGSI+
Sbjct: 304 SEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSIS 363

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            + + F  +   DLV+WT+++  Y  HG  KE++++F++M+   ++PD I F+ VL  CS
Sbjct: 364 DSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCS 423

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV +GL+YF  M+ DY+I PD E Y C+ DLLGR G + EA+ L+ +MP EP     
Sbjct: 424 HAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVW 483

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GACK +    L   AA+++L+  P+    Y L+S +YA+E  W + A++RK+M+  
Sbjct: 484 GALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGM 543

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              K  G SWIEI  E+++FV   +  P 
Sbjct: 544 NKKKEVGKSWIEIRNEVYSFVVGAKMGPH 572



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 210/396 (53%), Gaps = 28/396 (7%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV-KCKAFDDMEKLFDEMR 125
           S  LK       L  G   HS   K G+   + +QN +L +Y   C   DD   +F+++ 
Sbjct: 113 SSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIP 172

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++  V+W TLI+G  + G   +    FR+MLL++V  +  +F+   RAC        G++
Sbjct: 173 LKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQ 232

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ + K G   +  V ++++D+Y +C ++ DA+R F E+  ++L+ WN +++ Y  +  
Sbjct: 233 IHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDS 292

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + ++++F  M  EG K + FTF+S+  +C  L     G+Q+HG ++++ FD +V +  S
Sbjct: 293 SE-SLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINS 351

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK G+I D+ ++F  M  +++VSW TM++G+G +G G+EAVKL  +M+Q    PD
Sbjct: 352 LIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPD 411

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS------------IENALINAYSK 411
            +    +L  C            HA  +  G++ F S            I   +++   +
Sbjct: 412 RIVFMGVLCGCS-----------HAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGR 460

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLS 446
            G +  A Q   ++  EPD   W +++GA   + LS
Sbjct: 461 AGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLS 496



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 25/341 (7%)

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++ L+  Y   G   +A  +F+E+  RD+V W  M+  +        A  +F+ M    +
Sbjct: 46  ATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEV 105

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN-GNIDDAC 318
           + + FT SS++ +C  + +   G   H L  K   D  V V  +L+DMYA +   +DDA 
Sbjct: 106 QPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDAL 165

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            VF+ +  K  VSW T++ GF   GDG   +   R ML     P+  + +    +C S+S
Sbjct: 166 SVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASIS 225

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                +Q+HA   K G+     + N++++ Y +C  +  A +CFG + E +L+TW ++I 
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRY 487
            Y     S ES+ +F +M S   +P+   F  + +AC+           HGG+V  G   
Sbjct: 286 GYE-RSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
              +I+             L D+  + G + +++ L   MP
Sbjct: 345 NVALINS------------LIDMYAKCGSISDSHKLFCDMP 373



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 133/261 (50%), Gaps = 2/261 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A +  A       GKQ+H+ + K GL     + N +L +Y +C    D ++ F E+ 
Sbjct: 214 FSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELT 273

Query: 126 VRNIVTWNTLISGIINCGGNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +N++TWNTLI+G      + +   F +M  +  + +  TF S+  AC     +  G+++
Sbjct: 274 EKNLITWNTLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQV 333

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I++ GF  N  + ++L+D+Y KCG + D+ ++F ++  RDLV W  M+  Y  +  G
Sbjct: 334 HGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYG 393

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             A+ +F+ M   G++ D   F  ++  C   G    G +    ++   + + D  +   
Sbjct: 394 KEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRC 453

Query: 304 LVDMYAKNGNIDDACRVFDGM 324
           +VD+  + G +++A ++ + M
Sbjct: 454 VVDLLGRAGRVEEAFQLVENM 474


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/567 (32%), Positives = 309/567 (54%), Gaps = 37/567 (6%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF---------- 114
            YS  LK       ++ GK +H HI +  L   + L N +L +YVKC +           
Sbjct: 107 LYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEI 166

Query: 115 ---------------------DDMEKLFDEMRVRNIVTWNTLISGII-NCGGNVTPYFRR 152
                                DD  KLFD+M   +IV+WN++I+G++ N       +   
Sbjct: 167 PCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSM 226

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M    +++D  TF S+L+AC  +D++ +GR +H +I+K GF  +C+  SAL+D+Y  C  
Sbjct: 227 MHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKL 286

Query: 213 VEDARRVFDEV-----LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
           + +A ++FD+      +   L LWN M+S + +N     A+++ + M   G++ D++TFS
Sbjct: 287 LSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFS 346

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
            ++  C    +  L  Q+HG VI   ++LD +V + L+D+YAK G+I++A R+F+ +  K
Sbjct: 347 IVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDK 406

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           +VV+W++++ G  + G  + A  L  DM+      D   ++ +L +C SL+     +QVH
Sbjct: 407 DVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVH 466

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           +  +K G ++   +  ALI+ Y+KCG I  AL  FG + E D ++WTSII   A +G ++
Sbjct: 467 SLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAE 526

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           E+I +  KM+    +P+ I  L VL+AC H GLV E    FN + +++ ++P  EHY C+
Sbjct: 527 EAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCM 586

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            D+LG+ G   EA  L++ MP +P      + +GAC  + +  LA   AE LL   P   
Sbjct: 587 VDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDV 646

Query: 568 VNYALVSNVYASERCWFDVARLRKMMR 594
             Y ++SNVYA+   W  V+++R+ ++
Sbjct: 647 SVYIMLSNVYAALGMWDSVSKVRETVK 673



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 151/539 (28%), Positives = 260/539 (48%), Gaps = 45/539 (8%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A +   +F  ++  K LHSHI+K G CN + + N ++ VY KC +  D   +FDEM  RN
Sbjct: 9   AFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRN 68

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNV-RLDHITFNSLLRACVQADDIEVGRRLH 185
           IV+W T++S + N          +  M+   + + +   ++++L+AC    ++E+G+ +H
Sbjct: 69  IVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVH 128

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             I +    ++  + +AL+D+Y KCG + DA+RVF E+ C++   WN ++  YA   L D
Sbjct: 129 YHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLID 188

Query: 246 GAIAVFN------------------------------LMRLEGMKGDYFTFSSLVNSCGT 275
            A+ +F+                              +M  +G+K D FTF S++ +CG 
Sbjct: 189 DAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGC 248

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS---- 331
                LGR+IH  +IK  F+      ++L+DMY+    + +A ++FD     + VS    
Sbjct: 249 SDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLA 308

Query: 332 -WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
            WN+M+ G   NGD  EA+ ++  M +     D  T + +L  C +        QVH + 
Sbjct: 309 LWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFV 368

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           I +G +    + + LI+ Y+K GSI  AL+ F  + + D+V W+S+I   A  G  K + 
Sbjct: 369 ITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAF 428

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLT 508
            +F  M+   ++ D      VL ACS       G +  +L +   +   +SE    T L 
Sbjct: 429 SLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGY---ESEGVVTTALI 485

Query: 509 DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
           D+  + G + +A  L   +  E  + +  + I  C  +G    A     K++E   +KP
Sbjct: 486 DMYAKCGDIEDALSLFGCLS-EIDTMSWTSIIVGCAQNGRAEEAISLLHKMIE-SGTKP 542



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 206/432 (47%), Gaps = 46/432 (10%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L+HI      R C++   I+  + LHS I+K GF  + F+ + ++ +Y KC  + DAR +
Sbjct: 3   LNHIQIA--FRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNM 60

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM---RLEGMKGDYFTFSSLVNSCGTL 276
           FDE+  R++V W  MVS    + +   A++++N M   ++E  + + F +S+++ +CG +
Sbjct: 61  FDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIE--QPNQFLYSAVLKACGLV 118

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            + +LG+ +H  + +   D+D+++  +L+DMY K G++ DA RVF  +  KN  SWNT++
Sbjct: 119 RNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLI 178

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCP------------------------------DEVT 366
           +G+ + G   +A+KL   M +                                   DE T
Sbjct: 179 LGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFT 238

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF---- 422
             S+L +CG        R++H Y IK+G ++     +ALI+ YS C  ++ A + F    
Sbjct: 239 FPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYF 298

Query: 423 --GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
              SV E  L  W S++  +  +G   E++ +   M    VR D   F  VL  C +   
Sbjct: 299 RNSSVSE-SLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDN 357

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           +S   +    +I+  + L D    + L D+  + G +  A  L   +P +       + I
Sbjct: 358 LSLASQVHGFVITSGYEL-DCVVGSILIDIYAKQGSINNALRLFERLP-DKDVVAWSSLI 415

Query: 541 GACKVHGSIGLA 552
             C   GS  LA
Sbjct: 416 TGCARFGSDKLA 427



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/486 (22%), Positives = 202/486 (41%), Gaps = 127/486 (26%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN------IVTW 132
           L  G+++H +I+K G  +     + ++ +Y  CK   +  K+FD+   RN      +  W
Sbjct: 252 LMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQY-FRNSSVSESLALW 310

Query: 133 NTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           N+++SG +  G  V        M    VR D  TF+ +L+ C+  D++ +  ++H F++ 
Sbjct: 311 NSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVIT 370

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G+ L+C V S L+D+Y K G + +A R+F+ +  +D+V W+ +++  A       A ++
Sbjct: 371 SGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSL 430

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD--------------- 295
           F  M   G++ D+F  S ++ +C +L S + G+Q+H L +K+ ++               
Sbjct: 431 FMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAK 490

Query: 296 ----------------LDVLVATSLVDMYAKNGNIDDACRVFDGM----TAKNVVS---- 331
                           +D +  TS++   A+NG  ++A  +   M    T  N ++    
Sbjct: 491 CGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGV 550

Query: 332 --------------------------------WNTMVVGFGQNGDGREAVKLLRDMLQGS 359
                                           +N MV   GQ G   EAVKL+ +M    
Sbjct: 551 LTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEM---P 607

Query: 360 FCPDEVTLASILSSCGSLS------------ISCETRQVHAYAIKNGVQAFLSIENALIN 407
           F PD+   +S+L +CG+              ++     V  Y + + V A L + +++  
Sbjct: 608 FKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSK 667

Query: 408 --------------------------------AYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                                            ++K G   G ++    + EPDLV+W +
Sbjct: 668 VRETVKKIGKKRAGKIFYEIPFKFYFMEHLHLGHAKQGLNGGVVKVIYPILEPDLVSWNN 727

Query: 436 IIGAYA 441
           +I   A
Sbjct: 728 VIAGLA 733



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 124/318 (38%), Gaps = 37/318 (11%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           IH      H   S  LK  +     Q GKQ+HS  +K G  ++  +   ++ +Y KC   
Sbjct: 435 IHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDI 494

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +D   LF  +   + ++W ++I G    G          +M+    + + IT   +L AC
Sbjct: 495 EDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTAC 554

Query: 173 VQADDIEVGRRLHSFILKVGFGL-------NCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
             +  +E    + + I +   GL       NC     +VD+ G+ G  E+A ++  E+  
Sbjct: 555 RHSGLVEEAWDVFNSI-ETNHGLIPCPEHYNC-----MVDILGQAGRFEEAVKLISEMPF 608

Query: 226 R-DLVLWNVM---------------VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           + D  +W+ +               V+ + L    +       L  +    G + + S +
Sbjct: 609 KPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKV 668

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
             +   +G  + G+  + +  K  F   + +       +AK G      +V   +   ++
Sbjct: 669 RETVKKIGKKRAGKIFYEIPFKFYFMEHLHLG------HAKQGLNGGVVKVIYPILEPDL 722

Query: 330 VSWNTMVVGFGQNGDGRE 347
           VSWN ++ G   N    E
Sbjct: 723 VSWNNVIAGLADNASPYE 740


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/588 (32%), Positives = 311/588 (52%), Gaps = 72/588 (12%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVR 159
           N ++  Y K + FD+  +LFD M  +++V+WN++++G    G       +F  M      
Sbjct: 144 NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM----AE 199

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D +++N ++   V+  D+        F  K+    N      ++  + + G + +ARR+
Sbjct: 200 RDVVSWNLMVDGFVEVGDLNSS---WEFFEKIP-NPNTVSWVTMLCGFARFGKIAEARRL 255

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD++  R++V WN M++ Y  NC  D AI++F    +E  + +  ++++++N    +G  
Sbjct: 256 FDQMPIRNVVAWNAMIAAYVQNCHVDEAISLF----MEMPEKNSISWTTVINGYVRMGKL 311

Query: 280 KLGRQ----------------IHGLVIKQSFD-----------LDVLVATSLVDMYAKNG 312
              RQ                I G V  +  D            DV+   +++  Y++ G
Sbjct: 312 DEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCG 371

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ--------------- 357
            +D+A  +F  M  K++VSWNTMV  + Q G    A+K+  +M +               
Sbjct: 372 RMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQ 431

Query: 358 -GSFC---------------PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
            GS+                PD+ T A  LSSC  L+     +Q+H   +K+G    L +
Sbjct: 432 NGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFV 491

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            NALI  Y+KCGSI+ A   F  +   D+V+W S+I AYA +G  +E++++F KM    V
Sbjct: 492 SNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGV 551

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            PD + F+ +LSACSH GL+ +GL+ F  M+  Y+I P +EHY C+ DLLGR G L EA+
Sbjct: 552 APDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAF 611

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
            L+  M I   +   GA +GAC++HG++ LAK+AAEKLLE EP K  NY L+SN+ A   
Sbjct: 612 QLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAG 671

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
            W +VAR+R++M++    K PG SWIE+   +H F+S D +HP+AV +
Sbjct: 672 RWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVEL 719



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 184/376 (48%), Gaps = 51/376 (13%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G L + +QL + +        ++ Q  ++  YV+ K  DD  ++F+++ +R++V WNT
Sbjct: 307 RMGKLDEARQLLNQMP----YRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNT 362

Query: 135 LISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +I+G   CG               R+D      L +  V+ D +                
Sbjct: 363 MIAGYSQCG---------------RMDEAL--HLFKQMVKKDIV---------------S 390

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            N  V+S     Y + G ++ A ++F+E+  +++V WN ++S    N     A+  F LM
Sbjct: 391 WNTMVAS-----YAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLM 445

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             EG K D  TF+  ++SC  L + ++G+Q+H LV+K  +  D+ V+ +L+ MYAK G+I
Sbjct: 446 GHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSI 505

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
             A  +F  +   +VVSWN+++  +  NG+GREA+KL   M      PDEVT   ILS+C
Sbjct: 506 SSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSAC 565

Query: 375 GSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EP 428
             + +  +  +     V AY I+   + +      +++   + G +  A Q    +K   
Sbjct: 566 SHVGLIDQGLKLFKCMVQAYNIEPLAEHYA----CMVDLLGRAGRLEEAFQLVRGMKINA 621

Query: 429 DLVTWTSIIGAYAFHG 444
           +   W +++GA   HG
Sbjct: 622 NAGIWGALLGACRIHG 637



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 196/433 (45%), Gaps = 51/433 (11%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLD 161
           N ++  + K     D  +LFD M  RNIV+WN++I+  ++   N      R L D +   
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLH---NDRVEEARQLFDKMPTR 106

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
            +   +L+  C   +  E+ +  + F L + +  N    +A+V  Y K    ++ARR+FD
Sbjct: 107 DLYSWTLMITCYTRNG-ELAKARNLFNL-LPYKWNPVCCNAMVAGYAKNRQFDEARRLFD 164

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN---SCGTLGS 278
            +  +DLV WN M++ Y  N      +  F     E  + D  +++ +V+     G L S
Sbjct: 165 AMPAKDLVSWNSMLTGYTRNGEMRLGLQFFE----EMAERDVVSWNLMVDGFVEVGDLNS 220

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           S           ++  + + +   +++  +A+ G I +A R+FD M  +NVV+WN M+  
Sbjct: 221 S-------WEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAA 273

Query: 339 FGQNGDGREAVKLLRDMLQGSFCP--------------DEVTLASILSSCGSLSISCETR 384
           + QN    EA+ L  +M + +                 DE     +L+     +++ +T 
Sbjct: 274 YVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEAR--QLLNQMPYRNVAAQTA 331

Query: 385 QVHAYA----IKNGVQAFLSIE-------NALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
            +  Y     + +  Q F  I        N +I  YS+CG +  AL  F  + + D+V+W
Sbjct: 332 MISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSW 391

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +++ +YA  G    +I++FE+M    +    +++  ++S  +  G   + L+ F LM  
Sbjct: 392 NTMVASYAQVGQMDAAIKIFEEMKEKNI----VSWNSLISGLTQNGSYLDALKSFMLMGH 447

Query: 494 DYHILPDSEHYTC 506
           +    PD   + C
Sbjct: 448 EGQ-KPDQSTFAC 459



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 150/333 (45%), Gaps = 55/333 (16%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N    ++++  + K G + DAR++FD +  R++V WN M++ Y  N   + A  +F+ M 
Sbjct: 45  NTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP 104

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
                 D ++++ ++      G     R +  L+    +  + +   ++V  YAKN   D
Sbjct: 105 TR----DLYSWTLMITCYTRNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFD 157

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A R+FD M AK++VSWN+M+ G+ +NG+ R  ++   +M +                  
Sbjct: 158 EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE------------------ 199

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                   R V ++             N +++ + + G +  + + F  +  P+ V+W +
Sbjct: 200 --------RDVVSW-------------NLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVT 238

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++  +A  G   E+  +F++M    V    +A+  +++A      V E +  F  M    
Sbjct: 239 MLCGFARFGKIAEARRLFDQMPIRNV----VAWNAMIAAYVQNCHVDEAISLFMEMPEK- 293

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               +S  +T + +   R+G L EA  LL  MP
Sbjct: 294 ----NSISWTTVINGYVRMGKLDEARQLLNQMP 322



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 149/353 (42%), Gaps = 64/353 (18%)

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNS 167
           K    D+  K+F  M  +N VT N++IS     G   +    F  M   N+    +++NS
Sbjct: 27  KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI----VSWNS 82

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           ++ A +  D                                    VE+AR++FD++  RD
Sbjct: 83  MIAAYLHNDR-----------------------------------VEEARQLFDKMPTRD 107

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           L  W +M++CY  N     A  +FNL+         + ++ +  +    G +K  RQ   
Sbjct: 108 LYSWTLMITCYTRNGELAKARNLFNLLP--------YKWNPVCCNAMVAGYAK-NRQFDE 158

Query: 288 LVIKQSFDL----DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
              ++ FD     D++   S++  Y +NG +    + F+ M  ++VVSWN MV GF + G
Sbjct: 159 --ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVG 216

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           D   + +    +      P+ V+  ++L          E R++        V A+    N
Sbjct: 217 DLNSSWEFFEKIPN----PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW----N 268

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           A+I AY +   +  A+  F  + E + ++WT++I  Y   G   E+ ++  +M
Sbjct: 269 AMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 321



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE      S ++  L   A    LQ GKQLH  +MK G    L + N ++ +Y KC +  
Sbjct: 447 HEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSIS 506

Query: 116 DMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
             E LF ++   ++V+WN+LI+   +   G      F +M ++ V  D +TF  +L AC 
Sbjct: 507 SAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACS 566

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
               I+ G +L   +++  + +       + +VDL G+ G +E+A
Sbjct: 567 HVGLIDQGLKLFKCMVQ-AYNIEPLAEHYACMVDLLGRAGRLEEA 610



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 49/303 (16%)

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +    K+G ID+A +VF  MT KN V+ N+M+  F +NG   +A +L   M Q +     
Sbjct: 22  ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWN 81

Query: 365 VTLASILSS-------------------CGSLSISCETRQVHAYAIKNGVQAFLSIE--- 402
             +A+ L +                     +L I+C TR       +N +   L  +   
Sbjct: 82  SMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARN-LFNLLPYKWNP 140

Query: 403 ---NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
              NA++  Y+K      A + F ++   DLV+W S++  Y  +G  +  ++ FE+M   
Sbjct: 141 VCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER 200

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG--RVGLL 517
               D +++  ++      G ++    +F         +P+    + +T L G  R G +
Sbjct: 201 ----DVVSWNLMVDGFVEVGDLNSSWEFF-------EKIPNPNTVSWVTMLCGFARFGKI 249

Query: 518 VEAYDLLASMPIE---PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
            EA  L   MPI      +  + A++  C V  +I L        +E+     +++  V 
Sbjct: 250 AEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISL-------FMEMPEKNSISWTTVI 302

Query: 575 NVY 577
           N Y
Sbjct: 303 NGY 305


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 302/560 (53%), Gaps = 9/560 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QL S  +K GL N +   + +L VY KC    D  ++FD M  RN V+WN LI+G   
Sbjct: 112 GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTE 171

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   +    F  M  + +  D  TF SLL A V+     +  +LH  I+K G  L   V
Sbjct: 172 SGDMASALELFLEMEREGLAPDEATFASLLTA-VEGPSCFLMHQLHGKIVKYGSALGLTV 230

Query: 200 SSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLE 257
            +A +  Y +CG ++D+RR+FD +   RDL+ WN M+  Y  N + D A+  F  +M+  
Sbjct: 231 LNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQES 290

Query: 258 GMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---NGN 313
           G+  D ++F+S+++SC   G     GR IHGLVIK + +    V  +L+ MY +   N  
Sbjct: 291 GVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCM 350

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA + F+ +  K+ VSWN+M+ G+ Q+G   +A+K  R M   +   DE   ++ L S
Sbjct: 351 MEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRS 410

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L++    +Q+H   I +G  +   + ++LI  YSK G I  A + F    +   V W
Sbjct: 411 SSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW 470

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            ++I  YA HG ++    +F +ML      D I F+ ++++CSH GLV EG    N M +
Sbjct: 471 NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            Y +    EHY C  DL GR G L +A  L+ SMP EP +      +GAC++HG++ LA 
Sbjct: 531 KYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELAS 590

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             A  L   EP +   Y L+S++Y+    W D A ++++M+     KVPG SWIE+  E+
Sbjct: 591 DVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEV 650

Query: 614 HTFVSSDRSHPQAVHMYAML 633
           H+F + D+SHP+   +Y ML
Sbjct: 651 HSFNAEDKSHPKMDEIYEML 670



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 205/401 (51%), Gaps = 11/401 (2%)

Query: 102 NQVLHVYVKCK--AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDN 157
           NQ+L  Y +          ++FDE+  R+ V+WN L++     G +   +   R M    
Sbjct: 29  NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG 88

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           +  +     S LR+   A    +G +L S  LK G   N F +SAL+D+Y KCG V DAR
Sbjct: 89  LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDAR 148

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           +VFD +  R+ V WN +++ Y  +     A+ +F  M  EG+  D  TF+SL+ +     
Sbjct: 149 QVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEG-P 207

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMV 336
           S  L  Q+HG ++K    L + V  + +  Y++ G++ D+ R+FDG+   ++++SWN M+
Sbjct: 208 SCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAML 267

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLS-ISCETRQVHAYAIKNG 394
             +  NG   EA+K    M+Q S   PD  +  SI+SSC        + R +H   IK+ 
Sbjct: 268 GAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSA 327

Query: 395 VQAFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           ++    + NALI  Y++      +  A +CF S+   D V+W S++  Y+ HGLS ++++
Sbjct: 328 LEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALK 387

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            F  M S  VR D  AF   L + S   ++  G +   L+I
Sbjct: 388 FFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVI 428



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL+ S++   LQ GKQ+H  ++  G  +   + + ++ +Y K    DD  K F+E  
Sbjct: 404 FSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD 463

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V WN +I G    G   NV   F  ML     LDHITF  L+ +C  A  ++ G  
Sbjct: 464 KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSE 523

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
            L++   K G  L     +  VDLYG+ G ++ A+++ D +    D ++W  ++
Sbjct: 524 ILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 201/582 (34%), Positives = 317/582 (54%), Gaps = 41/582 (7%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDME---------------- 118
           GK LH+  +K  + +   L N  +++Y KC        AFD  E                
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86

Query: 119 --------KLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSL 168
                   +LFDE    + V++NTLISG  +    V     F+RM      +D  T + L
Sbjct: 87  DSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGL 146

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRD 227
           + AC   D +++ ++LH F +  GF     V++A V  Y K G + +A  VF  +   RD
Sbjct: 147 IAAC--CDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRD 204

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            V WN M+  Y  +  G  A+A++  M  +G K D FT +S++N+  +L     GRQ HG
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNID---DACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
            +IK  F  +  V + L+D Y+K G  D   D+ +VF  + + ++V WNTM+ G+  N +
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEE 324

Query: 345 -GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA-FLSIE 402
              EAVK  R M +    PD+ +   + S+C +LS   + +Q+H  AIK+ + +  +S+ 
Sbjct: 325 HSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVN 384

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NALI+ Y K G++  A + F  + E + V++  +I  YA HG   E++ ++++ML   + 
Sbjct: 385 NALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIA 444

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P++I F+ +LSAC+H G V EG +YFN M   + I P++EHY+C+ DLLGR G L EA  
Sbjct: 445 PNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAER 504

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
            + +MP +P S    A +GAC+ H ++ LA+ AA++L+ ++P     Y +++N+YA    
Sbjct: 505 FIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGK 564

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           W ++A +RK MR     K PGCSWIE+  + H FV+ D SHP
Sbjct: 565 WEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHP 606



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 189/401 (47%), Gaps = 38/401 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG------------ 211
           +F  LL   V   D+  G+ LH+  +K     + ++S+  V+LY KCG            
Sbjct: 10  SFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST 69

Query: 212 --------------FVED-----ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                         + +D     AR++FDE    D V +N ++S YA       A+ +F 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR  G + D FT S L+ +C       L +Q+H   +   FD    V  + V  Y+K G
Sbjct: 130 RMRELGFEVDGFTLSGLIAAC--CDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGG 187

Query: 313 NIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            + +A  VF GM   ++ VSWN+M+V +GQ+ +G +A+ L ++M+   F  D  TLAS+L
Sbjct: 188 LLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVL 247

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG---ALQCFGSVKEP 428
           ++  SL      RQ H   IK G      + + LI+ YSKCG   G   + + F  +  P
Sbjct: 248 NALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP 307

Query: 429 DLVTWTSIIGAYAFHGL-SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           DLV W ++I  Y+ +   S+E+++ F +M     RPD  +F+ V SACS+    S+G + 
Sbjct: 308 DLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQI 367

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             L I              L  L  + G L++A  +   MP
Sbjct: 368 HGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 317/567 (55%), Gaps = 7/567 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +GK++H H+++ G    + + N ++ +YVKC        LFD M  R+I++WN +ISG
Sbjct: 212 LARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISG 271

Query: 139 IIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                 C   +  +F    L +V  D +T  S++ AC    D  +GR +H++++  GF +
Sbjct: 272 YFENGMCHEGLELFFAMRGL-SVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  V ++L  +Y   G   +A ++F  +  +D+V W  M+S Y  N L D AI  + +M 
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMD 390

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            + +K D  T ++++++C TLG    G ++H L IK      V+VA +L++MY+K   ID
Sbjct: 391 QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCID 450

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  +F  +  KNV+SW +++ G   N    EA+  LR M + +  P+ +TL + L++C 
Sbjct: 451 KALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM-KMTLQPNAITLTAALAACA 509

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            +      +++HA+ ++ GV     + NAL++ Y +CG +  A   F S K+ D+ +W  
Sbjct: 510 RIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKK-DVTSWNI 568

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++  Y+  G     +E+F++M+   VRPD I F+ +L  CS   +V +GL YF+ M  DY
Sbjct: 569 LLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDY 627

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            + P+ +HY C+ DLLGR G L EA+  +  MP+ P     GA + AC++H  I L + +
Sbjct: 628 GVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELS 687

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A+ + EL+      Y L+ N+YA    W +VA++R+MM++N      GCSW+E+ G++H 
Sbjct: 688 AQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHA 747

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           F+S D+ HPQ   +  +L   +  M E
Sbjct: 748 FLSDDKYHPQTKEINTVLEGFYEKMSE 774



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 210/388 (54%), Gaps = 4/388 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           ++G +++S  +       + L N  L ++V+     D   +F +M  RN+ +WN L+ G 
Sbjct: 111 EEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGY 170

Query: 140 INCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
              G     +  Y R + +  V+ D  TF  +LR C    D+  G+ +H  +++ G+ L+
Sbjct: 171 AKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELD 230

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+ +Y KCG V+ AR +FD +  RD++ WN M+S Y  N +    + +F  MR 
Sbjct: 231 IDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRG 290

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +  D  T +S++++C  LG  +LGR IH  VI   F +D+ V  SL  MY   G+  +
Sbjct: 291 LSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWRE 350

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++F  M  K++VSW TM+ G+  N    +A+   R M Q S  PDE+T+A++LS+C +
Sbjct: 351 AEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACAT 410

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L       ++H  AIK  + +++ + N LIN YSKC  I  AL  F ++   ++++WTSI
Sbjct: 411 LGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSI 470

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           I     +    E++ +F + +   ++P+
Sbjct: 471 IAGLRLNNRCFEAL-IFLRQMKMTLQPN 497



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 199/376 (52%), Gaps = 10/376 (2%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V +D   F +L+R C      E G +++S  L     L   + +A + ++ + G + DA 
Sbjct: 90  VAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAW 149

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTL 276
            VF ++  R+L  WNV+V  YA     D A+ +++ ++ + G+K D +TF  ++ +CG +
Sbjct: 150 YVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGI 209

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                G+++H  V++  ++LD+ V  +L+ MY K G++  A  +FD M  ++++SWN M+
Sbjct: 210 PDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMI 269

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +NG   E ++L   M   S  PD +TL S++S+C  L      R +HAY I  G  
Sbjct: 270 SGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFA 329

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             +S+ N+L   Y   GS   A + F  ++  D+V+WT++I  Y ++ L  ++I+ +  M
Sbjct: 330 VDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMM 389

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS----DYHILPDSEHYTCLTDLLG 512
              +V+PD I    VLSAC+  G +  G+    L I      Y I+ ++     L ++  
Sbjct: 390 DQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN-----LINMYS 444

Query: 513 RVGLLVEAYDLLASMP 528
           +   + +A D+  ++P
Sbjct: 445 KCKCIDKALDIFHNIP 460



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 1/231 (0%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ + N M+   +  D   F +LV  C    + + G +++ + +     L V +  + + 
Sbjct: 78  AMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLA 137

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEV 365
           M+ + GN+ DA  VF  M+ +N+ SWN +V G+ + G   EA+ L   ML  G   PD  
Sbjct: 138 MFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVY 197

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T   +L +CG +      ++VH + ++ G +  + + NALI  Y KCG +  A   F  +
Sbjct: 198 TFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
              D+++W ++I  Y  +G+  E +E+F  M   +V PD +    V+SAC 
Sbjct: 258 PRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACE 308



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 176/401 (43%), Gaps = 49/401 (12%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A  G L  G +LH   +K  L + + + N ++++Y KCK  D    +F  +  
Sbjct: 402 AAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPR 461

Query: 127 RNIVTWNTLISGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +N+++W ++I+G+ +N        F R +   ++ + IT  + L AC +   +  G+ +H
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIH 521

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + +L+ G GL+ F+ +AL+D+Y +CG +  A   F+    +D+  WN++++ Y+    G 
Sbjct: 522 AHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGS 580

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             + +F+ M    ++ D  TF SL+  C     S++ RQ  GL                 
Sbjct: 581 MVVELFDRMVKSRVRPDEITFISLLCGC---SKSQMVRQ--GL----------------- 618

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MY          ++ D     N+  +  +V   G+ G+ +EA K ++ M      PD  
Sbjct: 619 -MYFS--------KMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKM---PVTPDPA 666

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
              ++L++C  +    +  ++ A  I    +  +     L N Y+ CG      +    +
Sbjct: 667 VWGALLNAC-RIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMM 725

Query: 426 KEPDLV-----TWTSIIGAY-------AFHGLSKESIEVFE 454
           KE  L      +W  + G          +H  +KE   V E
Sbjct: 726 KENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLE 766



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 34/250 (13%)

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G   NG   EA+KLL  M +     DE    +++  C       E  +V++ A+ +    
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + + NA +  + + G++  A   FG + E +L +W  ++G YA  G   E++ ++ +ML
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187

Query: 458 -SHAVRPDSIAFLEVLSACSHGGLVSEG-------LRY--------FNLMISDYHILPDS 501
               V+PD   F  VL  C     ++ G       +RY         N +I+ Y    D 
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 502 EHYTCLTDLLGRVGLL------------------VEAYDLLASMPIEPRSDTLGAFIGAC 543
           +    L D + R  ++                  +E +  +  + ++P   TL + I AC
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISAC 307

Query: 544 KVHGSIGLAK 553
           ++ G   L +
Sbjct: 308 ELLGDRRLGR 317


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 338/613 (55%), Gaps = 33/613 (5%)

Query: 79  LQQGKQLHSHIMKLGLCN--KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN-----IVT 131
           L+ G++ H+  +K G  +  +    N +L +Y +    DD + LF  +   +     +VT
Sbjct: 179 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVT 238

Query: 132 WNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           WNT++S ++  G  G        M+   VR D ITF S L AC Q + + +GR +H+++L
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 190 K-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDG 246
           K      N FV+SALVD+Y     V  ARRVFD V    R L LWN MV  YA   + + 
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 247 AIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           A+ +F  M  E G+     T + ++ +C    +      +HG V+K+    +  V  +L+
Sbjct: 359 ALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALM 418

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFC--- 361
           D+YA+ G+++ A  +F  +  ++VVSWNT++ G    G   +A +L+R+M Q G F    
Sbjct: 419 DLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDAT 478

Query: 362 --------------PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
                         P+ VTL ++L  C  L+   + +++H YA+++ + + +++ +AL++
Sbjct: 479 TEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVD 538

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSI 466
            Y+KCG +A +   F  + + +++TW  +I AY  HGL  E+I +F++M +S+  +P+ +
Sbjct: 539 MYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEV 598

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            F+  L+ACSH G+V  G+  F+ M  ++ + P  + + C  D+LGR G L EAY ++ S
Sbjct: 599 TFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITS 658

Query: 527 M-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
           M P E +     +F+GAC++H ++ L + AAE+L +LEP +  +Y L+ N+Y++   W  
Sbjct: 659 MEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEK 718

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
            + +R  MR     K PGCSWIE+ G IH F++ + +HP++  ++A +  ++  M     
Sbjct: 719 SSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGY 778

Query: 646 SGHCNVLDKEMDE 658
           +   + +  +++E
Sbjct: 779 TPDTSSVLHDIEE 791



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 199/410 (48%), Gaps = 16/410 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS--LQNQVLHVYVKCKAFDDMEKL 120
           H     A K +A    L   + +H   ++  L +  +  + N +L  Y +C        L
Sbjct: 59  HFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALAL 118

Query: 121 FDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ-ADD 177
           F+ M  R+ VT+N+LI+   +           R MLL+   L   T  S+L AC   A+D
Sbjct: 119 FNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAED 178

Query: 178 IEVGRRLHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD-----LVL 230
           + +GR  H+F LK GF  G   F  +AL+ +Y + G V+DA+ +F  V   D     +V 
Sbjct: 179 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVT 238

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN MVS    +     AI V   M   G++ D  TF+S + +C  L    LGR++H  V+
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 291 KQS-FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGRE 347
           K S    +  VA++LVDMYA +  +  A RVFD +    + +  WN MV G+ Q G   E
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 348 AVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           A++L   M  +    P E T+A +L +C           VH Y +K G+     ++NAL+
Sbjct: 359 ALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALM 418

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           + Y++ G +  A   F +++  D+V+W ++I      G   ++ ++  +M
Sbjct: 419 DLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREM 468



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGV-QAFL-SIENALINAYSKCGSIAGALQ 420
           D   L     S  +L      R +H  A++  +   F  ++ NAL+ AY++CG +  AL 
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F ++   D VT+ S+I A         +++    ML       S   + VL ACSH   
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSH--- 174

Query: 481 VSEGLR 486
           ++E LR
Sbjct: 175 LAEDLR 180


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/611 (32%), Positives = 332/611 (54%), Gaps = 34/611 (5%)

Query: 82  GKQLHSHIMKLGLCNKLSLQ---NQVLHVYVKCKAFDDMEKLF--DEMRVRNIVTWNTLI 136
           G++ H+  +K G  +K   +   N +L +Y +    DD ++LF      V ++VTWNT+I
Sbjct: 173 GREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-F 193
           S ++  G           M+   VR D +TF S L AC + + + VGR +H+F+LK    
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDL 292

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVL--CRDLVLWNVMVSCYALNC-LGDGAIAV 250
             N FV+SALVD+Y     V  ARRVFD V    R L +WN M+  YA +  + + AI +
Sbjct: 293 AANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIEL 352

Query: 251 FNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           F+ M  E G      T + ++ +C           +HG V+K+    +  V  +L+DMYA
Sbjct: 353 FSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYA 412

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-------------- 355
           + G +D+A  +F  +  +++VSWNT++ G    G   EA +L+R+M              
Sbjct: 413 RLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLE 472

Query: 356 -----LQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
                + G  C P+ +TL ++L  C  L+     +++H YA+++ +++ L++ +AL++ Y
Sbjct: 473 GDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMY 532

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAF 468
           +KCG +A A   F  +   +++TW  +I AY  HGL  E++ +F++M+++    P+ + F
Sbjct: 533 AKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTF 592

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM- 527
           +  L+ACSH GLV  GL  F  M  DY   P    + C+ D+LGR G L EAY +++SM 
Sbjct: 593 IAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMA 652

Query: 528 PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587
           P E +       +GAC++H ++ L + AAE+L ELEP +  +Y L+ N+Y++   W +  
Sbjct: 653 PGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENST 712

Query: 588 RLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSG 647
            +R MMR     K PGCSWIE+ G IH F++ + +HP++  ++A +  ++  M       
Sbjct: 713 EVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVP 772

Query: 648 HCNVLDKEMDE 658
             + +  ++DE
Sbjct: 773 DTSCVLHDVDE 783



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 201/412 (48%), Gaps = 19/412 (4%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS--LQNQVLHVYVKCKAFDDMEKL 120
           H     A+K +A     +  + +H   ++  L ++ +  + N +L  Y +C   D    L
Sbjct: 48  HFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALAL 107

Query: 121 FDEMR--VRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           F      +R+ V++N+LIS +      G+     R ML D+  +   T  S+L AC    
Sbjct: 108 FAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLA 166

Query: 177 DI--EVGRRLHSFILKVGF---GLNCFVSSALVDLYGKCGFVEDARRVF--DEVLCRDLV 229
           D    +GR  H+F LK GF   G   F  +AL+ +Y + G V+DA+R+F        DLV
Sbjct: 167 DQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLV 226

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            WN M+S        + A+ V   M   G++ D  TF+S + +C  L    +GR++H  V
Sbjct: 227 TWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFV 286

Query: 290 IK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT--AKNVVSWNTMVVGFGQNGD-G 345
           +K      +  VA++LVDMYA N  +  A RVFD +    + +  WN M+ G+ Q+G   
Sbjct: 287 LKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD 346

Query: 346 REAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            EA++L   M   + C P E T+A +L +C    +      VH Y +K  + +   ++NA
Sbjct: 347 EEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNA 406

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           L++ Y++ G +  A   F  +   D+V+W ++I      GL  E+ ++  +M
Sbjct: 407 LMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREM 458



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 18/263 (6%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF--DLDVLVATSLVDMYAKNGNIDDACR 319
           D+F     + S   L  S+  R IHG  ++++        V+ +L+  YA+ G++D A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 320 VFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
           +F       ++ VS+N+++           A+  LRDML         TL S+L +C  L
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEV-SSFTLVSVLLACSHL 165

Query: 378 SISCET--RQVHAYAIKNGVQAFLSIE------NALINAYSKCGSIAGALQCFGSVKE-- 427
           +       R+ HA+A+K+G   FL         NAL++ Y++ G +  A + F S     
Sbjct: 166 ADQGHRLGREAHAFALKHG---FLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGV 222

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            DLVTW ++I      G  +E+++V   M++  VRPD + F   L ACS   L+  G   
Sbjct: 223 GDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREV 282

Query: 488 FNLMISDYHILPDSEHYTCLTDL 510
              ++ D  +  +S   + L D+
Sbjct: 283 HAFVLKDDDLAANSFVASALVDM 305



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 93/193 (48%), Gaps = 7/193 (3%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--G 138
           +GK++H + ++  L + L++ + ++ +Y KC        +FD +  RN++TWN LI   G
Sbjct: 505 RGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYG 564

Query: 139 IINCGGNVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILK-VGFGLN 196
           +   G      F RM+ +     + +TF + L AC  +  ++ G  L   + +  GF   
Sbjct: 565 MHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPT 624

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRD--LVLWNVMV-SCYALNCLGDGAIAVFNL 253
            ++ + +VD+ G+ G +++A  +   +   +  +  W+ M+ +C     +  G IA   L
Sbjct: 625 PYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERL 684

Query: 254 MRLEGMKGDYFTF 266
             LE  +  ++  
Sbjct: 685 FELEPDEASHYVL 697


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/533 (36%), Positives = 300/533 (56%), Gaps = 14/533 (2%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR 159
           N ++  Y K        +LFDE+   + V++NTLISG  +          F+RM      
Sbjct: 78  NVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFE 137

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           +D  T + L+ AC   D +++ ++LH F +  GF     V++A V  Y K G + +A  V
Sbjct: 138 VDGFTLSGLIAAC--CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSV 195

Query: 220 F---DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           F   DE+  RD V WN M+  Y  +  G  A+A++  M  +G K D FT +S++N+  +L
Sbjct: 196 FYGMDEL--RDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSL 253

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID---DACRVFDGMTAKNVVSWN 333
                GRQ HG +IK  F  +  V + L+D Y+K G  D   D+ +VF  + + ++V WN
Sbjct: 254 DHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWN 313

Query: 334 TMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           TM+ G+  N +   EAVK  R M +    PD+ +   + S+C +LS   + +Q+H  AIK
Sbjct: 314 TMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIK 373

Query: 393 NGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           + + +  +S+ NALI+ Y K G++  A   F  + E + V++  +I  YA HG   E++ 
Sbjct: 374 SHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALL 433

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           ++++ML   + P+ I F+ VLSAC+H G V EG  YFN M   + I P++EHY+C+ DLL
Sbjct: 434 LYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLL 493

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G L EA   + +MP +P S    A +GAC+ H ++ LA+ AA +L+ ++P     Y 
Sbjct: 494 GRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYV 553

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           +++N+YA  R W ++A +RK MR     K PGCSWIE+  + H FV+ D SHP
Sbjct: 554 MLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHP 606



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 210/449 (46%), Gaps = 41/449 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG------------ 211
           TF  LL   V   D+  G+ LH+  +K     + ++S+  V+LY KCG            
Sbjct: 10  TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69

Query: 212 --------------FVED-----ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                         + +D     AR++FDE+   D V +N ++S YA       A+ +F 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR  G + D FT S L+ +C       L +Q+H   +   FD    V  + V  Y+K G
Sbjct: 130 RMRKLGFEVDGFTLSGLIAAC--CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGG 187

Query: 313 NIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            + +A  VF GM   ++ VSWN+M+V +GQ+ +G +A+ L ++M+   F  D  TLAS+L
Sbjct: 188 LLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVL 247

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG---ALQCFGSVKEP 428
           ++  SL      RQ H   IK G      + + LI+ YSKCG   G   + + F  +  P
Sbjct: 248 NALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSP 307

Query: 429 DLVTWTSIIGAYAFH-GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           DLV W ++I  Y+ +  LS+E+++ F +M     RPD  +F+ V SACS+    S+  + 
Sbjct: 308 DLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQI 367

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
             L I  +           L  L  + G L +A  +   MP E  + +    I     HG
Sbjct: 368 HGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP-ELNAVSFNCMIKGYAQHG 426

Query: 548 SIGLAKWAAEKLLE--LEPSKPVNYALVS 574
               A    +++L+  + P+K    A++S
Sbjct: 427 HGTEALLLYQRMLDSGIAPNKITFVAVLS 455


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/591 (31%), Positives = 317/591 (53%), Gaps = 38/591 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  + +H+ ++K GL N     ++++   V    FD +     +FD ++  N++ WNT+
Sbjct: 15  LQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTM 74

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             G       V+  +  + + ++ L  +  TF  LL+AC ++     G+++H  +LK+G 
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGC 134

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFD-------------------------------E 222
            L+ +V ++L+ +Y K G  EDAR+VFD                               E
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +D+V WN ++S YA       A+ +F  M    +K D  T  +++++C    S +LG
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  +    F  ++ +  +L+D+Y K G ++ A  +F+G++ K+V+SWNT++ G+   
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLS 400
              +EA+ L ++ML+    P+EVT+ SIL +C  L      R +H Y  K   GV    S
Sbjct: 315 NLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 374

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  + ++F +M    
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG 434

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD I F+ +LSACSH G++  G   F  M  DY I P  EHY C+ DLLG  GL  EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEA 494

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++ SM ++P      + + ACK+HG++ L +  A+ L+++EP    +Y L+SN+YA+ 
Sbjct: 495 EEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATA 554

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
             W +VA+ R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y 
Sbjct: 555 GRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 200/398 (50%), Gaps = 42/398 (10%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD---LYGKCGFVEDARRVFDEV 223
           SLL  C     +   R +H+ ++K G     +  S L++   L      +  A  VFD +
Sbjct: 7   SLLHNCKTLQSL---RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              +L++WN M   +AL+     A+ ++  M   G+  + +TF  L+ +C    + + G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG-------------------- 323
           QIHG V+K   DLD+ V TSL+ MY KNG  +DA +VFD                     
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 324 -----------MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
                      +  K+VVSWN ++ G+ + G+ +EA++L ++M++ +  PDE T+ ++LS
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243

Query: 373 SCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           +C   S S E  RQVH++   +G  + L I NALI+ Y KCG +  A   F  +   D++
Sbjct: 244 ACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVI 302

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W ++IG Y    L KE++ +F++ML     P+ +  L +L AC+H G +  G R+ ++ 
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIG-RWIHVY 361

Query: 492 ISDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           I      +   S   T L D+  + G +  A  +  SM
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+   ++ G+Q+HS I   G  + L + N ++ +Y+KC   +    LF+ +  +++
Sbjct: 242 LSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV 301

Query: 130 VTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           ++WNTLI G   +N        F+ ML      + +T  S+L AC     I++GR +H +
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY 361

Query: 188 ILKVGFGLN--CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           I K   G++    + ++L+D+Y KCG +E A++VFD +L R L  WN M+  +A++   +
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
            A  +F+ MR +G++ D  TF  L+++C   G   LGR I
Sbjct: 422 PAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHI 461


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/588 (30%), Positives = 320/588 (54%), Gaps = 7/588 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H  ++K+G  + + + N +L +Y      ++ + +F +M  +++++WN+L++  +N
Sbjct: 381 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVN 440

Query: 142 CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G ++        M+     ++++TF S L AC   +  + GR LH  ++  G   N  +
Sbjct: 441 DGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQII 500

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +ALV +YGK G +  +RRV  ++  RD+V WN ++  YA N   D A+A F  +R+EG+
Sbjct: 501 GNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGV 560

Query: 260 KGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
             +Y T  S++++C   G   + G+ +H  ++   F+ D  V  SL+ MYAK G++  + 
Sbjct: 561 SANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQ 620

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F+G+  +++++WN ++     +G G E +KL+  M       D+ + +  LS+   L+
Sbjct: 621 DLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLA 680

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  E +Q+H  A+K G +    I NA  + YSKCG I   ++         L +W  +I 
Sbjct: 681 VLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILIS 740

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           A   HG  +E  E F +ML   ++P  + F+ +L+ACSHGGLV +GL Y++++  D+ + 
Sbjct: 741 ALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLE 800

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EH  C+ DLLGR G L EA   ++ MP++P      + + +CK+H  +   + AAE 
Sbjct: 801 PAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAEN 860

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L +LEP     + L SN++A+   W DV  +RK M      K   CSW+++  ++ +F  
Sbjct: 861 LSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGI 920

Query: 619 SDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECTLW 662
            DR+HPQ + +YA L  +  L++E+    + S      D+E  E  LW
Sbjct: 921 GDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLW 968



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 239/468 (51%), Gaps = 13/468 (2%)

Query: 82  GKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           G+ LH+  +K GL  +LS+   N ++++Y K         LFD+M VRN V+WNT++SGI
Sbjct: 77  GRALHALCVK-GLV-RLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGI 134

Query: 140 INCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDI-EVGRRLHSFILKVGFGLN 196
           +  G  +    +F++M    ++       SL+ AC ++  +   G ++H F+ K G   +
Sbjct: 135 VRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSD 194

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +VS+A++ LYG  G V  +R+VF+E+  R++V W  ++  Y+     +  I ++  MR 
Sbjct: 195 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRG 254

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EG++ +  + S +++SCG L    LGRQI G VIK   +  + V  SL+ M+   GN+D 
Sbjct: 255 EGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDY 314

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ ++ ++ +SWN++V  + QNG   E+ ++   M +     +  T++++LS  G 
Sbjct: 315 ANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGD 374

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +      R +H   +K G  + + + N L+  Y+  G    A   F  +   DL++W S+
Sbjct: 375 VDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSL 434

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           + ++   G S +++ +   M+      + + F   L+AC       +G R  + ++    
Sbjct: 435 MASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKG-RILHGLVVVSG 493

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGA 542
           +  +      L  + G++G +  +  +L  M   PR D +   A IG 
Sbjct: 494 LFDNQIIGNALVSMYGKIGGMSTSRRVLLQM---PRRDVVAWNALIGG 538



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 235/472 (49%), Gaps = 5/472 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            ++G Q+H  + K GL + + +   +LH+Y          K+F+EM  RN+V+W +L+ G
Sbjct: 176 FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVG 235

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G    V   ++ M  + V  +  + + ++ +C    D  +GR++   ++K G    
Sbjct: 236 YSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESK 295

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++L+ ++G  G V+ A  +F+++  RD + WN +V+ YA N   + +  +FNLMR 
Sbjct: 296 LAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRR 355

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
              + +  T S+L++  G +   K GR IHGLV+K  FD  V V  +L+ MYA  G  ++
Sbjct: 356 FHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEE 415

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  K+++SWN+++  F  +G   +A+ +L  M++     + VT  S L++C S
Sbjct: 416 ADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFS 475

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                + R +H   + +G+     I NAL++ Y K G ++ + +    +   D+V W ++
Sbjct: 476 PEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNAL 535

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           IG YA +    +++  F+ +    V  + I  + VLSAC   G + E  +  +  I    
Sbjct: 536 IGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAG 595

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHG 547
              D      L  +  + G L  + DL   +  + RS  T  A + A   HG
Sbjct: 596 FESDEHVKNSLITMYAKCGDLSSSQDLFNGL--DNRSIITWNAILAANAHHG 645



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ L  +AK   L++G+QLH   +KLG      + N    +Y KC    ++ K+     
Sbjct: 669 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSV 728

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WN LIS +   G    V   F  ML   ++  H+TF SLL AC     ++ G  
Sbjct: 729 NRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLA 788

Query: 184 LHSFILKVGFGLNCFVSSAL--VDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYA 239
            +  I K  FGL   +   +  +DL G+ G + +A     ++  +  DLV  +++ SC  
Sbjct: 789 YYDMIAK-DFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKI 847

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
              L  G  A  NL +LE      F  SS
Sbjct: 848 HRDLDRGRKAAENLSKLEPEDDSVFVLSS 876


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/494 (35%), Positives = 285/494 (57%), Gaps = 5/494 (1%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           ++LL A      I   R +H+ + K     + F+   LV  Y K G+ EDA ++FD++  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           +DLV WN ++S ++  CL   ++  F  M+ E  +K +  T  S++++C   G+   G+ 
Sbjct: 103 KDLVSWNSLISGFS-RCL-HMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKY 158

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHG  IK    L+V VA SL++MY K+G++  ACR+F+ +   N VSWN+++     NG 
Sbjct: 159 IHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGC 218

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            RE +     M +     DE T+ ++L +C  L +      +H      G  A ++I  A
Sbjct: 219 AREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATA 278

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+K G ++ +   F  V   D V WT+++  YA HGL +E+I++FE M +  + PD
Sbjct: 279 LLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPD 338

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + F  +LSACSH GLV+EG  YFN+M   Y I P  +HY+C+ DLLGR GLL +AY+++
Sbjct: 339 HVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVI 398

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +MP+EP +   GA +GAC+VHG+I L K  AE L+ +EP  P NY ++SN+Y++ R W 
Sbjct: 399 QNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWK 458

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           D A++R ++++    + PG S IE   + H F   DRSHP+   +Y+ L  + G + +  
Sbjct: 459 DAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAG 518

Query: 645 VSGHCNVLDKEMDE 658
            S     + ++++E
Sbjct: 519 YSSKTEYVLQDVEE 532



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 200/379 (52%), Gaps = 5/379 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +++H+ + K  L     + +Q++  Y K    +D  KLFD+M  +++V+WN+LISG   C
Sbjct: 59  REIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC 118

Query: 143 -GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
              ++T ++      +V+ + +T  S++ AC  A  ++ G+ +H F +KVG  L   V++
Sbjct: 119 LHMSLTAFYTMKFEMSVKPNEVTILSMISACSGA--LDAGKYIHGFGIKVGGTLEVKVAN 176

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +L+++YGK G +  A R+F+ +   + V WN +++    N      I  FN MR  G++ 
Sbjct: 177 SLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQ 236

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T  +L+ +C  LG  KL   IHGL+    F   + +AT+L+D YAK G +  +  VF
Sbjct: 237 DEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVF 296

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
             +   + V+W  M+ G+  +G GREA+KL   M      PD VT   +LS+C    +  
Sbjct: 297 TEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVN 356

Query: 382 ETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
           E +   +  +   G++  +   + +++   +CG +  A +   ++  EP+   W +++GA
Sbjct: 357 EGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGA 416

Query: 440 YAFHGLSKESIEVFEKMLS 458
              HG  +   EV E +++
Sbjct: 417 CRVHGNIELGKEVAEHLIN 435



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 9/292 (3%)

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           +SA  G L  GK +H   +K+G   ++ + N ++++Y K        +LF+ +   N V+
Sbjct: 146 ISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVS 205

Query: 132 WNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           WN++I+  +   C      YF +M    +  D  T  +LL+AC+     ++   +H  + 
Sbjct: 206 WNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMF 265

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             GFG    +++AL+D Y K G +  +  VF EV   D V W  M++ YA + LG  AI 
Sbjct: 266 CTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIK 325

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV--ATSLVDM 307
           +F  M  +G++ D+ TF+ L+++C   G    G+     V+ + + ++  V   + +VD+
Sbjct: 326 LFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFN-VMSEVYGIEPRVDHYSCMVDL 384

Query: 308 YAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLRDM 355
             + G ++DA  V   M  + N   W  ++     +G+   G+E  + L +M
Sbjct: 385 LGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINM 436



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 40/255 (15%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+     G  +  + +H  +   G   K+++   +L  Y K         +F E+   + 
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V W  +++G      G      F  M    +  DH+TF  LL AC  +  +  G+   + 
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNV 364

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + +V +G+   V   S +VDL G+CG + DA  V                          
Sbjct: 365 MSEV-YGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQN----------------------- 400

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
                   M +E   G    + +L+ +C   G+ +LG+++   +I     LD      L 
Sbjct: 401 --------MPMEPNAG---VWGALLGACRVHGNIELGKEVAEHLINME-PLDPRNYIMLS 448

Query: 306 DMYAKNGNIDDACRV 320
           +MY+ + +  DA +V
Sbjct: 449 NMYSASRSWKDAAKV 463



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 362 PDEVTLASILS--SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           P+ +  A +++  SC S+S     R++HA   K+ +     I + L+  Y+K G    AL
Sbjct: 38  PEAIVSALLIAVNSCPSIS---NCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDAL 94

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM-LSHAVRPDSIAFLEVLSACSHG 478
           + F  +   DLV+W S+I    F      S+  F  M    +V+P+ +  L ++SACS  
Sbjct: 95  KLFDDMPHKDLVSWNSLIS--GFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACSGA 152

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
               + +  F + +       + +    L ++ G+ G L  A  L  ++P +P + +  +
Sbjct: 153 LDAGKYIHGFGIKVGG---TLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNS 208

Query: 539 FIGACKVHG 547
            I A   +G
Sbjct: 209 IIAAQVTNG 217


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/595 (31%), Positives = 320/595 (53%), Gaps = 19/595 (3%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T    S+Y   L+         + + +H HI+K G    L +   +++VY KC   +   
Sbjct: 60  TRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAH 119

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACV 173
           K+FD +  RN+  W TL++G +    N  P      F +ML       + T   +L AC 
Sbjct: 120 KVFDNLPRRNVNAWTTLLTGYVQ---NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACS 176

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
               IE G+++H++++K     +  + ++L   Y K   +E A + F  +  +D++ W  
Sbjct: 177 SLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTS 236

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           ++S    N     +++ F  M  +GMK + +T +S++++C  + +  LG QIH L IK  
Sbjct: 237 VISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLG 296

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD--------- 344
           +   +L+  S++ +Y K G + +A ++F+GM   N+V+WN M+ G  +  D         
Sbjct: 297 YGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAH 356

Query: 345 --GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
             G  A+ + + + +    PD  T +S+LS C +L    +  Q+H   IK+GV A + + 
Sbjct: 357 KSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVG 416

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            AL++ Y+KCGSI  A + F  +    +++WTS+I  +A HGLS++++++FE M    ++
Sbjct: 417 TALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIK 476

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+ + F+ VLSACSH GL  E L YF LM   Y+I P  +H+ CL D+  R+G + EA+D
Sbjct: 477 PNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFD 536

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
           ++  M  EP        I  C+ HG   L  +AAE+LL+L+P     Y  + N++ S   
Sbjct: 537 VVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGR 596

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           W DV+++RK+M++    K+   SWI I  ++++F  +D+SH Q++ MY +L TV 
Sbjct: 597 WKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVL 651


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 316/575 (54%), Gaps = 7/575 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ LK  A       G+Q+H  ++K G    + + + ++ +Y KC+  +D  + F E+ 
Sbjct: 104 FSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS 163

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLD---NVRLDHITFNSLLRACVQADDIEVGR 182
             N V+WN LI+G +      T ++   L++    V +D  TF  LL          + +
Sbjct: 164 EPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLK 223

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALN 241
           ++H+ +LK+G      + +A++  Y  CG V DA+RVFD +   +DL+ WN M++ ++ +
Sbjct: 224 QVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKH 283

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            L + A  +F  M+   ++ D +T++ L+++C        G+ +HG+VIK+  +      
Sbjct: 284 ELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSAT 343

Query: 302 TSLVDMYAK--NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
            +L+ MY +   G ++DA  +F+ + +K+++SWN+++ GF Q G   +AVK    +    
Sbjct: 344 NALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSE 403

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D+   +++L SC  L+     +Q+HA A K+G  +   + ++LI  YSKCG I  A 
Sbjct: 404 IKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESAR 463

Query: 420 QCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           +CF  +      V W ++I  YA HGL + S+++F +M +  V+ D + F  +L+ACSH 
Sbjct: 464 KCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHT 523

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL+ EGL   NLM   Y I P  EHY    DLLGR GL+ +A +L+ SMP+ P    L  
Sbjct: 524 GLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKT 583

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
           F+G C+  G I +A   A  LLE+EP     Y  +S++Y+  + W + A ++KMM++   
Sbjct: 584 FLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGV 643

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            KVPG SWIEI  ++  F + DRS+P    +Y M+
Sbjct: 644 KKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMI 678



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 206/397 (51%), Gaps = 6/397 (1%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           H + +K G  + + + N++L  Y+K         LFDEM  R+ V+WNT+ISG  +CG  
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 146 VTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
              +  F  M      +D  +F+ LL+        ++G ++H  ++K G+  N +V S+L
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSL 142

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGD 262
           VD+Y KC  VEDA   F E+   + V WN +++ +        A  +  LM ++  +  D
Sbjct: 143 VDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMD 202

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF+ L+          L +Q+H  V+K     ++ +  +++  YA  G++ DA RVFD
Sbjct: 203 AGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFD 262

Query: 323 GM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           G+  +K+++SWN+M+ GF ++     A +L   M +     D  T   +LS+C       
Sbjct: 263 GLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQI 322

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSK--CGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + +H   IK G++   S  NALI+ Y +   G++  AL  F S+K  DL++W SII  
Sbjct: 323 FGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITG 382

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +A  GLS+++++ F  + S  ++ D  AF  +L +CS
Sbjct: 383 FAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 419



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 177/332 (53%), Gaps = 17/332 (5%)

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H + +K G   + +VS+ ++D Y K GF+  A  +FDE+  RD V WN M+S Y      
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A  +F  M+  G   D ++FS L+    ++    LG Q+HGLVIK  ++ +V V +SL
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSL 142

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPD 363
           VDMYAK   ++DA   F  ++  N VSWN ++ GF Q  D + A  LL  M ++ +   D
Sbjct: 143 VDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMD 202

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF- 422
             T A +L+           +QVHA  +K G+Q  ++I NA+I++Y+ CGS++ A + F 
Sbjct: 203 AGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFD 262

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------ 476
           G     DL++W S+I  ++ H L + + E+F +M  H V  D   +  +LSACS      
Sbjct: 263 GLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQI 322

Query: 477 -----HGGLVSEGLRYF----NLMISDYHILP 499
                HG ++ +GL       N +IS Y   P
Sbjct: 323 FGKSLHGMVIKKGLEQVTSATNALISMYIQFP 354


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 326/617 (52%), Gaps = 38/617 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QGKQ+H+HI+ LG+     L +++++ Y       D + + +     + + WN +IS 
Sbjct: 108 LSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISL 167

Query: 139 II-NC-GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            + NC   +    +RRML   V  D  T+ S+L+AC +  D + G  +H  I +     +
Sbjct: 168 YVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWS 227

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV +ALV +YG+ G +E AR +FD +  RD V WN M+SCYA   L D A  +F  MR 
Sbjct: 228 LFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMRE 287

Query: 257 EGM--------------------KGDYFTFSSL--------------VNSCGTLGSSKLG 282
            G+                    KG    FS +              +N+C  +G+ KLG
Sbjct: 288 AGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLG 347

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           ++IHG  ++  FD+   V  +L+ MY++  +++ A  +F  +  K +++WN M+ GF   
Sbjct: 348 KEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHM 407

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ--AFLS 400
               E   LLR+ML+    P+ VT+ASIL  C  ++     ++ H Y +K   Q   +L 
Sbjct: 408 DRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLL 467

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + N+L+  YS+ G +  A + F S+   D VT+TS+I  Y   G  + ++++F +M    
Sbjct: 468 LWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLN 527

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD +  + VL ACSH GLV++G   F  MI  Y I P  EHY+C+ DL GR GLL +A
Sbjct: 528 IKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKA 587

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++  M  +P S      IGACK+HG+  + +WAA KLLE++P     Y L++N+YA+ 
Sbjct: 588 KEVITGMSCKPTSAIWATLIGACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAA 647

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
                 A  R  MRD+   + PGC+W+++  E+  F++ D S+P++  +  M+  +  LM
Sbjct: 648 NRLDKEAEARTYMRDSGAKRTPGCAWVDVGRELCPFLAGDTSNPRSCEISPMMKRLNILM 707

Query: 641 EENNVSGHCNVLDKEMD 657
           ++   +    V+  E D
Sbjct: 708 KDAGYAPSEGVVSSEED 724



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 191/438 (43%), Gaps = 46/438 (10%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL  C     +  G+++H+ I+ +G   N  + S L++ Y     + DA+ V +     D
Sbjct: 98  LLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFD 157

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            + WN+++S Y  NCL + AI+V+  M  +G+  D +T+ S++ +CG L     G  +H 
Sbjct: 158 PLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHK 217

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            + + S    + V  +LV MY + G ++ A  +FD M A++ VSWNTM+  +   G   E
Sbjct: 218 AIQESSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDE 277

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSC-------GSLSISCETR---------------- 384
           A +L   M +     + +   +I   C       G+L +  + R                
Sbjct: 278 AFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNA 337

Query: 385 -----------QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
                      ++H +A++     F +++N LI  YS+C  +  A   F  + E  L+TW
Sbjct: 338 CSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITW 397

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI- 492
            +++  +A    S+E   +  +ML   V P+ +    +L  C+    +  G  +   M+ 
Sbjct: 398 NAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVK 457

Query: 493 -----SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG-ACKVH 546
                  Y +L     +  L ++  R G ++EA  +  S+  +         +G      
Sbjct: 458 REEQFKGYLLL-----WNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGD 512

Query: 547 GSIGLAKWAAEKLLELEP 564
           G   L  +A  + L ++P
Sbjct: 513 GETALKLFAEMRRLNIKP 530



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 196/423 (46%), Gaps = 48/423 (11%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK   +      G  +H  I +  +   L + N ++ +Y +    +   +LFD M 
Sbjct: 196 YPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGRFGKLEVARELFDIMP 255

Query: 126 VRNIVTWNTLISGIINCG----------------------------------GNVTPYFR 151
            R+ V+WNT+IS   + G                                  GN     +
Sbjct: 256 ARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALK 315

Query: 152 --RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
               +   ++LD +     L AC     +++G+ +H   ++  F +   V + L+ +Y +
Sbjct: 316 LFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSR 375

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           C  +  A  +F ++  + L+ WN M+S +A     +    +   M  EG++ +Y T +S+
Sbjct: 376 CRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASI 435

Query: 270 VNSCGTLGSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           +  C  + + + G++ H  ++K  + F   +L+  SLV+MY+++G + +A +VFD ++ K
Sbjct: 436 LPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRK 495

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE----- 382
           + V++ +M++G+G +GDG  A+KL  +M + +  PD VT+ ++L +C    +  +     
Sbjct: 496 DEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLF 555

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYA 441
            + +  Y I   V+ +    + +++ + + G +  A +    +  +P    W ++IGA  
Sbjct: 556 RKMIEVYGIDPRVEHY----SCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACK 611

Query: 442 FHG 444
            HG
Sbjct: 612 IHG 614


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 300/553 (54%), Gaps = 5/553 (0%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           H + +K G  + + + N++L  Y+K         LFDEM  R+ V+WNT+ISG  +CG  
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 146 VTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
              +  F  M      +D  +F+ LL+        ++G ++H  ++K G+  N +V S+L
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSL 142

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGD 262
           VD+Y KC  VEDA   F E+   + V WN +++ +        A  +  LM ++  +  D
Sbjct: 143 VDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMD 202

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             TF+ L+          L +Q+H  V+K     ++ +  +++  YA  G++ DA RVFD
Sbjct: 203 AGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFD 262

Query: 323 GMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           G+  +K+++SWN+M+ GF Q G   +AVK    +       D+   +++L SC  L+   
Sbjct: 263 GLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQ 322

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP-DLVTWTSIIGAY 440
             +Q+HA A K+G  +   + ++LI  YSKCG I  A +CF  +      V W ++I  Y
Sbjct: 323 LGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGY 382

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HGL + S+++F +M +  V+ D + F  +L+ACSH GL+ EGL   NLM   Y I P 
Sbjct: 383 AQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPR 442

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHY    DLLGR GL+ +A +L+ SMP+ P    L  F+G C+  G I +A   A  LL
Sbjct: 443 MEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLL 502

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           E+EP     Y  +S++Y+  + W + A ++KMM++    KVPG SWIEI  ++  F + D
Sbjct: 503 EIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAED 562

Query: 621 RSHPQAVHMYAML 633
           RS+P    +Y M+
Sbjct: 563 RSNPLCQDIYMMI 575



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 216/445 (48%), Gaps = 42/445 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ LK  A       G+Q+H  ++K G    + + + ++ +Y KC+  +D  + F E+ 
Sbjct: 104 FSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS 163

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLD---NVRLDHITFNSLLRACVQADDIEVGR 182
             N V+WN LI+G +      T ++   L++    V +D  TF  LL          + +
Sbjct: 164 EPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLK 223

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALN 241
           ++H+ +LK+G      + +A++  Y  CG V DA+RVFD +   +DL+ WN M++ +A  
Sbjct: 224 QVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQK 283

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            L + A+  F+ +R   +K D + FS+L+ SC  L + +LG+QIH L  K  F  +  V 
Sbjct: 284 GLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVI 343

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +SL+ MY+K G I+ A + F  +++K + V+WN M++G+ Q+G G+ ++ L   M   + 
Sbjct: 344 SSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNV 403

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D VT  +IL++C            H   I+ G++        L+N       I     
Sbjct: 404 KLDHVTFTAILTACS-----------HTGLIQEGLE--------LLNLMEPVYKI----- 439

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
                 +P +  + + +      GL  ++ E+ E M    + PD +     L  C   G 
Sbjct: 440 ------QPRMEHYAAAVDLLGRAGLVNKAKELIESM---PLNPDPMVLKTFLGVCRACGE 490

Query: 481 VSEGLRYFNLMISDYHILPDSEHYT 505
           +    +  N ++    I P+ +H+T
Sbjct: 491 IEMATQVANHLL---EIEPE-DHFT 511


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 337/639 (52%), Gaps = 31/639 (4%)

Query: 15  FKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSA 74
           F+R ++ +     +N +    N       V+ ++    GT  ES     S+Y   L+   
Sbjct: 22  FRRTITVVGVGFQKNHSLIQLN-------VVDAEEPKLGTRIES-----SYYFPLLQECI 69

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
                 + + +H HI+K G    L +   +++VY KC   +   K+FD +  RN+  W T
Sbjct: 70  DRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTT 129

Query: 135 LISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           L++G +    N  P      F +ML       + T   +L AC     IE G+++H++++
Sbjct: 130 LLTGYVQ---NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI 186

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           K     +  + ++L   Y K   +E A + F  +  +D++ W  ++S    N     +++
Sbjct: 187 KYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLS 246

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
            F  M  +GMK + +T +S++++C  + +  LG QIH L IK  +   +L+  S++ +Y 
Sbjct: 247 FFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYL 306

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----------GREAVKLLRDMLQG 358
           K G + +A ++F+GM   N+V+WN M+ G  +  D           G  A+ + + + + 
Sbjct: 307 KCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRS 366

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD  T +S+LS C +L    +  Q+H   IK+GV A + +  AL++ Y+KCGSI  A
Sbjct: 367 GMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKA 426

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  +    +++WTS+I  +A HGLS++++++FE M    ++P+ + F+ VLSACSH 
Sbjct: 427 SKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHA 486

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL  E L YF LM   Y+I P  +H+ CL D+  R+G + EA+D++  M  EP       
Sbjct: 487 GLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSM 546

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            I  C+ HG   L  +AAE+LL+L+P     Y  + N++ S   W DV+++RK+M++   
Sbjct: 547 LIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKV 606

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
            K+   SWI I  ++++F  +D+SH Q++ MY +L TV 
Sbjct: 607 GKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVL 645


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 310/565 (54%), Gaps = 19/565 (3%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H+H++K G   +  + + +++VY KC    +  K+FD +  RN+V W TL++G +    
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQ--- 58

Query: 145 NVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           N  P      F  ML       + T +  L AC   + I +G++ H+FI+K     +  +
Sbjct: 59  NSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSI 118

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL  LY K G ++ + + F E   +D++ W  ++S    N      + +F  M  E +
Sbjct: 119 GNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENV 178

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + + FT +S+++ C T+ SS LG Q+H L  K   + ++ +  SLV +Y K G ID+A  
Sbjct: 179 EPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKN 238

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGD-----------GREAVKLLRDMLQGSFCPDEVTLA 368
           +F+ M  KN+++WN M+ G  Q  D           G EA+ +   + +    PD  TL+
Sbjct: 239 LFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLS 298

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           SIL+ C  L+   +  Q+HA  IK+G  + + +  AL++ Y KCGSI  A + F  +   
Sbjct: 299 SILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTR 358

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
            L++WTS+I ++A HG S+ ++++FE M     RP+ I F+ VL+ACSH G+V E L YF
Sbjct: 359 TLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYF 418

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            +M  +Y I P  +HY CL D+  R+G L EA+D++  M +EP        I  C+ HG+
Sbjct: 419 EIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGN 478

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
             L  +AAE+LL+L+P     Y ++ N+Y S   W DV+ +R++M++    K+   S I 
Sbjct: 479 EELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRIS 538

Query: 609 IAGEIHTFVSSDRSHPQAVHMYAML 633
           I GE+H+F +++R H     ++ +L
Sbjct: 539 IKGEVHSFKTNNRLHNHNAELHTLL 563



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 206/424 (48%), Gaps = 23/424 (5%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL   +    +  GKQ H+ I+K  + +  S+ N +  +Y K  + D   K F E   
Sbjct: 85  SIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGE 144

Query: 127 RNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +++++W T+IS    CG N         F  ML +NV  +  T  S+L  C      ++G
Sbjct: 145 KDVISWTTIISA---CGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLG 201

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-- 239
            ++HS   K+G   N  ++++LV LY KCG +++A+ +F+ +  ++L+ WN M++ +A  
Sbjct: 202 MQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQA 261

Query: 240 ---------LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
                        G  A+ ++  +   G K D FT SS++  C  L + + G QIH   I
Sbjct: 262 MDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTI 321

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K  F  DV+V T+LVDMY K G+I+ A + F  M+ + ++SW +M+  F ++G  + A++
Sbjct: 322 KSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQ 381

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAY 409
           L  DM    F P+++T   +L++C    +  E  +      K   ++  +     L++ +
Sbjct: 382 LFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMF 441

Query: 410 SKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
            + G +  A      +  EP+   W  +I     HG  +      E++L   ++P S   
Sbjct: 442 VRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLK--LKPRSTET 499

Query: 469 LEVL 472
             VL
Sbjct: 500 YVVL 503


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 316/603 (52%), Gaps = 24/603 (3%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+  L+  A    L+ G QLH+H +K        ++   L +Y KC    D + LF
Sbjct: 280 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 339

Query: 122 DEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D     N  ++N +I+G      G      F R++   +  D I+ + + RAC     + 
Sbjct: 340 DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLS 399

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +++   +K    L+  V++A +D+YGKC  + +A RVFDE+  RD V WN +++ + 
Sbjct: 400 EGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHE 459

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N  G   + +F  M    ++ D FTF S++ +C T GS   G +IH  ++K     +  
Sbjct: 460 QNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGMASNSS 518

Query: 300 VATSLVDMYAKNGNIDDACRV----------------FDGMTAKNV----VSWNTMVVGF 339
           V  SL+DMY+K G I++A ++                 + M  K +    VSWN+++ G+
Sbjct: 519 VGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGY 578

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
                  +A  L   M++    PD+ T A++L +C +L+ +   +Q+HA  IK  +Q+ +
Sbjct: 579 VMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDV 638

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            I + L++ YSKCG +  +   F      D VTW ++I  YA HG  +E+I++FE+M+  
Sbjct: 639 YICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILE 698

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++P+ + F+ +L AC+H GL+ +GL YF +M  DY + P   HY+ + D+LG+ G +  
Sbjct: 699 NIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKR 758

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVH-GSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           A +L+  MP E         +G C +H  ++ +A+ A   LL L+P     Y L+SNVYA
Sbjct: 759 ALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYA 818

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
               W  V+ LR+ MR     K PGCSW+E+  E+H F+  D++HP+   +Y  L  ++ 
Sbjct: 819 DAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYS 878

Query: 639 LME 641
            M+
Sbjct: 879 EMK 881



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 234/488 (47%), Gaps = 35/488 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S   K  AK G L+ GKQ H+H++  G      + N +L VY   + F     +FD+M 
Sbjct: 51  FSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMP 110

Query: 126 VRNIVTWNTLISGI--------INCGGNVTPY-------------------------FRR 152
           +R++V+WN +I+G          N   N+ P                          F  
Sbjct: 111 LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 170

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M  + +  D  TF  +L+ C   +D  +G ++H  +++VG   +   +SAL+D+Y K   
Sbjct: 171 MGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKR 230

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
             ++ RVF  +  ++ V W+ +++    N L   A+  F  M+          ++S++ S
Sbjct: 231 FVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRS 290

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  L   +LG Q+H   +K  F  D +V T+ +DMYAK  N+ DA  +FD     N  S+
Sbjct: 291 CAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSY 350

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N M+ G+ Q   G +A+ L   ++      DE++L+ +  +C  +    E  Q++  AIK
Sbjct: 351 NAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIK 410

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           + +   + + NA I+ Y KC ++A A + F  ++  D V+W +II A+  +G   E++ +
Sbjct: 411 SSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFL 470

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F  ML   + PD   F  +L AC+ GG +  G+   + ++    +  +S     L D+  
Sbjct: 471 FVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYS 528

Query: 513 RVGLLVEA 520
           + G++ EA
Sbjct: 529 KCGMIEEA 536



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 209/434 (48%), Gaps = 33/434 (7%)

Query: 126 VRNIVTWNTLISGIINCGGNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            R++V++N  ++  I+     +  YF   L     +    F+ + + C +   +E+G++ 
Sbjct: 11  TRSVVSFNRCLTEKISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQA 70

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY------ 238
           H+ ++  GF    FV + L+ +Y        A  VFD++  RD+V WN M++ Y      
Sbjct: 71  HAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDM 130

Query: 239 ----------------ALNCLGDG---------AIAVFNLMRLEGMKGDYFTFSSLVNSC 273
                           + N +  G         +I VF  M  EG++ D  TF+ ++  C
Sbjct: 131 FKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVC 190

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
             L  + LG QIHG+V++   D DV+ A++L+DMYAK     ++ RVF G+  KN VSW+
Sbjct: 191 SFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWS 250

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
            ++ G  QN     A+K  ++M + +    +   AS+L SC +LS      Q+HA+A+K+
Sbjct: 251 AIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS 310

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
              A   +  A ++ Y+KC ++  A   F + +  +  ++ ++I  Y+      +++ +F
Sbjct: 311 DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLF 370

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
            +++S  +  D I+   V  AC+    +SEGL+ + L I     L D        D+ G+
Sbjct: 371 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL-DVCVANAAIDMYGK 429

Query: 514 VGLLVEAYDLLASM 527
              L EA+ +   M
Sbjct: 430 CQALAEAFRVFDEM 443


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 336/643 (52%), Gaps = 20/643 (3%)

Query: 1   MLSRCPAPPIFTVHF-----KRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTI 55
           M  RC AP    + F     + P+S+        Q +   +A      + SS LR     
Sbjct: 89  MYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAM----GLFSSMLRLGTAP 144

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            E           A++  A+ G L  G+Q+H+  +K      L +QN ++ +Y K  +  
Sbjct: 145 DEFA------LGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVG 198

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR-LDHITFNSLLRAC 172
           D   LF+ +R +++ +W ++I+G+   G  +     FR M+ + +   +   F S+ RAC
Sbjct: 199 DGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRAC 258

Query: 173 -VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
            V  + +E G ++H   +K     N +   +L D+Y +C  ++ A +VF  +   DLV W
Sbjct: 259 SVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSW 318

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +++ ++ + L   A+ +F+ MR   +K D  T  +L+ +C    + + GR IH  ++K
Sbjct: 319 NSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVK 378

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                DV+V  SL+ MY +  +   A  VF     ++VV+WN+++    Q+    +  KL
Sbjct: 379 LGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKL 438

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
            R +       D ++L ++LS+   L      +QVHAYA K G+ +   + NALI+ Y+K
Sbjct: 439 FRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAK 498

Query: 412 CGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           CGS+  A + F  +    D+ +W+S+I  YA  G +KE++++F +M +  V+P+ + F+ 
Sbjct: 499 CGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVG 558

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL ACS  GLV EG  Y+++M  +Y I+P  EH +C+ DLL R G L EA   +  MP E
Sbjct: 559 VLIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFE 618

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P        + A + H  + + K AAE +L ++PS    Y L+ N+YAS   W + ARL+
Sbjct: 619 PDIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLK 678

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K MR +   K PG SWI++ GE+  F+  DRSHP++  MY ML
Sbjct: 679 KDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEMYTML 721



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 223/466 (47%), Gaps = 16/466 (3%)

Query: 28  QNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVS-----AKFGFLQQG 82
           QN + TI   Q +    LS+ LR   ++  S  SA    S A   +     ++     QG
Sbjct: 2   QNPSGTIL--QFYHSGRLSAALRAFESLPFSPASAPDPLSAAAYAALVAACSRLRSFPQG 59

Query: 83  KQLHSHIMKLG-----LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           + +H H++        L     L N ++ +Y +C A D    +FD M  RN V+W  +I+
Sbjct: 60  RLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIA 119

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                    +    F  ML      D     S +RAC +  D+ +GR++H+  +K   G 
Sbjct: 120 AHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGG 179

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  V +ALV +Y K G V D   +F+ +  +DL  W  +++  A       A+ +F  M 
Sbjct: 180 HLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMI 239

Query: 256 LEGM-KGDYFTFSSLVNSCG-TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
            EGM   + F F S+  +C   + S + G QIHGL +K   D +     SL DMYA+   
Sbjct: 240 AEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNK 299

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +D A +VF  + + ++VSWN+++  F  +G   EA+ L  +M   S  PD +T+ ++L +
Sbjct: 300 LDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCA 359

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C       + R +H+Y +K G+   + + N+LI+ Y++C     A+  F    + D+VTW
Sbjct: 360 CVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTW 419

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            SI+ A   H   ++  ++F  + S     D I+   VLSA +  G
Sbjct: 420 NSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELG 465


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/494 (35%), Positives = 285/494 (57%), Gaps = 5/494 (1%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           ++LL A      I   R +H+ + K     + F+   LV  Y K G+ EDA ++FD++  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           +DLV WN ++S ++  CL   ++  F  M+ E  +K +  T  S++++C   G+   G+ 
Sbjct: 103 KDLVSWNSLISGFS-RCL-HMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKY 158

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHG  IK    L+V VA SL++MY K+G++  ACR+F+ +   N VSWN+++     NG 
Sbjct: 159 IHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGC 218

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            RE +     M +     DE T+ ++L +C  L +      +H      G  A ++I  A
Sbjct: 219 AREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATA 278

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+K G ++ +   F  V   D V WT+++  YA HGL +E+I++FE M +  + PD
Sbjct: 279 LLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPD 338

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + F  +LSACSH GLV+EG  YFN+M   Y I P  +HY+C+ DLLGR GLL +AY+++
Sbjct: 339 HVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVI 398

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +MP+EP +   GA +GAC+VHG+I L K  AE L+ +EP  P NY ++SN+Y++ R W 
Sbjct: 399 QNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWK 458

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           D A++R ++++    + PG S IE   + H F   DRSHP+   +Y+ L  + G + +  
Sbjct: 459 DAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAG 518

Query: 645 VSGHCNVLDKEMDE 658
            S     + ++++E
Sbjct: 519 YSSKTEYVLQDVEE 532



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 200/379 (52%), Gaps = 5/379 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +++H+ + K  L     + +Q++  Y K    +D  KLFD+M  +++V+WN+LISG   C
Sbjct: 59  REIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC 118

Query: 143 -GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
              ++T ++      +V+ + +T  S++ AC  A  ++ G+ +H F +KVG  L   V++
Sbjct: 119 LHMSLTAFYTMKFEMSVKPNEVTILSMISACNGA--LDAGKYIHGFGIKVGGTLEVKVAN 176

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +L+++YGK G +  A R+F+ +   + V WN +++    N      I  FN MR  G++ 
Sbjct: 177 SLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQ 236

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T  +L+ +C  LG  KL   IHGL+    F   + +AT+L+D YAK G +  +  VF
Sbjct: 237 DEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVF 296

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
             +   + V+W  M+ G+  +G GREA+KL   M      PD VT   +LS+C    +  
Sbjct: 297 TEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVN 356

Query: 382 ETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
           E +   +  +   G++  +   + +++   +CG +  A +   ++  EP+   W +++GA
Sbjct: 357 EGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGA 416

Query: 440 YAFHGLSKESIEVFEKMLS 458
              HG  +   EV E +++
Sbjct: 417 CRVHGNIELGKEVAEHLIN 435



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 9/292 (3%)

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           +SA  G L  GK +H   +K+G   ++ + N ++++Y K        +LF+ +   N V+
Sbjct: 146 ISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVS 205

Query: 132 WNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           WN++I+  +   C      YF +M    +  D  T  +LL+AC+     ++   +H  + 
Sbjct: 206 WNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMF 265

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             GFG    +++AL+D Y K G +  +  VF EV   D V W  M++ YA + LG  AI 
Sbjct: 266 CTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIK 325

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV--ATSLVDM 307
           +F  M  +G++ D+ TF+ L+++C   G    G+     V+ + + ++  V   + +VD+
Sbjct: 326 LFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFN-VMSEVYGIEPRVDHYSCMVDL 384

Query: 308 YAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLRDM 355
             + G ++DA  V   M  + N   W  ++     +G+   G+E  + L +M
Sbjct: 385 LGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINM 436



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 40/255 (15%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+     G  +  + +H  +   G   K+++   +L  Y K         +F E+   + 
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V W  +++G      G      F  M    +  DH+TF  LL AC  +  +  G+   + 
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNV 364

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + +V +G+   V   S +VDL G+CG + DA  V                          
Sbjct: 365 MSEV-YGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQN----------------------- 400

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
                   M +E   G    + +L+ +C   G+ +LG+++   +I     LD      L 
Sbjct: 401 --------MPMEPNAG---VWGALLGACRVHGNIELGKEVAEHLINME-PLDPRNYIMLS 448

Query: 306 DMYAKNGNIDDACRV 320
           +MY+ + +  DA +V
Sbjct: 449 NMYSASRSWKDAAKV 463



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 362 PDEVTLASILS--SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           P+ +  A +++  SC S+S     R++HA   K+ +     I + L+  Y+K G    AL
Sbjct: 38  PEAIVSALLIAVNSCPSIS---NCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDAL 94

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F  +   DLV+W S+I  ++   L       +      +V+P+ +  L ++SAC+   
Sbjct: 95  KLFDDMPHKDLVSWNSLISGFS-RCLHMSLTAFYTMKFEMSVKPNEVTILSMISACNGAL 153

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
              + +  F + +       + +    L ++ G+ G L  A  L  ++P +P + +  + 
Sbjct: 154 DAGKYIHGFGIKVGG---TLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSI 209

Query: 540 IGACKVHG 547
           I A   +G
Sbjct: 210 IAAQVTNG 217


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 180/488 (36%), Positives = 287/488 (58%), Gaps = 6/488 (1%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N+ LD+ + N  + A  +   ++VG + H+  LK+    + FV +AL+++Y  C +   A
Sbjct: 88  NMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASA 147

Query: 217 RRVFDEV--LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           R V D       D+V WN +++ Y    + + A+  F+ M  E ++ D  T  +++ +C 
Sbjct: 148 RLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACA 207

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
             G+ K+G   H LV+   F+++  + +SLV MYAK G +++A RVF+ M  +NVV W +
Sbjct: 208 RTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTS 267

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G  Q+G  +EAV L RDM       D+ T+A+++SSCG +      R +HAY   +G
Sbjct: 268 MIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHG 327

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +   LS++N+LI+ YSKCG +  A Q F  + + D+ TWT +I  +A +GL  E++++F 
Sbjct: 328 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 387

Query: 455 KMLSH-AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           +M     V P+ + FL VL+ACSHGGLV +G  +F+ M   Y+++P  EHY C+ DLLGR
Sbjct: 388 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 447

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
             LL EA   +  MP+ P      + + AC+  G +GLA++AAE++ +LEP +   + L+
Sbjct: 448 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 507

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SNVYA+   W DV  +R  M ++   K PGCS+IE+ G IH F + D SH +     A+ 
Sbjct: 508 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFET---EAIC 564

Query: 634 CTVFGLME 641
            T+FG+ E
Sbjct: 565 NTLFGINE 572



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 209/399 (52%), Gaps = 12/399 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--V 126
           A+  +A+   L  G Q H+  +KL L +   + N ++++Y  C        + D      
Sbjct: 99  AISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWA 158

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++V+WNT+I+G I  G        F +M  + VRLD +T  ++L AC +   ++VG   
Sbjct: 159 SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 218

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++  GF +NC++ S+LV +Y KCG VE+ARRVF+ +  R++V W  M++    +   
Sbjct: 219 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRF 278

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M++ G+K D  T +++V+SCG +G+  LGR +H          ++ V  SL
Sbjct: 279 KEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSL 338

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPD 363
           +DMY+K G+++ A ++F G+T ++V +W  M++GF  NG   EA+ L   M  +    P+
Sbjct: 339 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 398

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQC 421
           EV    +L++C    +  E    H + +         IE+   +++   +   +A A Q 
Sbjct: 399 EVIFLGVLTACSHGGL-VEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQF 457

Query: 422 FGSVK-EPDLVTWTSII---GAYAFHGLSKESIEVFEKM 456
              +   PD+V W S++    A    GL++ + E  E++
Sbjct: 458 IKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQL 496


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 316/603 (52%), Gaps = 24/603 (3%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+  L+  A    L+ G QLH+H +K        ++   L +Y KC    D + LF
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 297

Query: 122 DEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D     N  ++N +I+G      G      F R++   +  D I+ + + RAC     + 
Sbjct: 298 DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLS 357

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +++   +K    L+  V++A +D+YGKC  + +A RVFDE+  RD V WN +++ + 
Sbjct: 358 EGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHE 417

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N  G   + +F  M    ++ D FTF S++ +C T GS   G +IH  ++K     +  
Sbjct: 418 QNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGMASNSS 476

Query: 300 VATSLVDMYAKNGNIDDACRV----------------FDGMTAKNV----VSWNTMVVGF 339
           V  SL+DMY+K G I++A ++                 + M  K +    VSWN+++ G+
Sbjct: 477 VGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGY 536

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
                  +A  L   M++    PD+ T A++L +C +L+ +   +Q+HA  IK  +Q+ +
Sbjct: 537 VMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDV 596

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            I + L++ YSKCG +  +   F      D VTW ++I  YA HG  +E+I++FE+M+  
Sbjct: 597 YICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILE 656

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++P+ + F+ +L AC+H GL+ +GL YF +M  DY + P   HY+ + D+LG+ G +  
Sbjct: 657 NIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKR 716

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVH-GSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           A +L+  MP E         +G C +H  ++ +A+ A   LL L+P     Y L+SNVYA
Sbjct: 717 ALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYA 776

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
               W  V+ LR+ MR     K PGCSW+E+  E+H F+  D++HP+   +Y  L  ++ 
Sbjct: 777 DAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYS 836

Query: 639 LME 641
            M+
Sbjct: 837 EMK 839



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/522 (28%), Positives = 254/522 (48%), Gaps = 32/522 (6%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           G Q+H  ++++G    +   + +L +Y K K F +  ++F  +  +N V+W+ +I+G + 
Sbjct: 157 GMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 216

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            N       +F+ M   N  +    + S+LR+C    ++ +G +LH+  LK  F  +  V
Sbjct: 217 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 276

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A +D+Y KC  ++DA+ +FD     +   +N M++ Y+    G  A+ +F+ +   G+
Sbjct: 277 RTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 336

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  + S +  +C  +     G QI+GL IK S  LDV VA + +DMY K   + +A R
Sbjct: 337 GFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFR 396

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC--GSL 377
           VFD M  ++ VSWN ++    QNG G E + L   ML+    PDE T  SIL +C  GSL
Sbjct: 397 VFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSL 456

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF----------GSVKE 427
               E   +H+  +K+G+ +  S+  +LI+ YSKCG I  A +            G+++E
Sbjct: 457 GYGME---IHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEE 513

Query: 428 PD----------LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            +           V+W SII  Y     S+++  +F +M+   + PD   +  VL  C++
Sbjct: 514 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 573

Query: 478 GGLVSEGL-RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
             L S GL +  +  +    +  D    + L D+  + G L ++  L+    +     T 
Sbjct: 574 --LASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR-LMFEKSLRRDFVTW 630

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
            A I     HG    A    E+++ LE  KP +   +S + A
Sbjct: 631 NAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRA 671



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 231/480 (48%), Gaps = 35/480 (7%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           AK G L+ GKQ H+H++  G      + N +L VY   + F     +FD+M +R++V+WN
Sbjct: 17  AKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWN 76

Query: 134 TLISGI--------INCGGNVTPY-------------------------FRRMLLDNVRL 160
            +I+G          N   N+ P                          F  M  + +  
Sbjct: 77  KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 136

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  TF  +L+ C   +D  +G ++H  +++VG   +   +SAL+D+Y K     ++ RVF
Sbjct: 137 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 196

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +  ++ V W+ +++    N L   A+  F  M+          ++S++ SC  L   +
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 256

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG Q+H   +K  F  D +V T+ +DMYAK  N+ DA  +FD     N  S+N M+ G+ 
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 316

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q   G +A+ L   ++      DE++L+ +  +C  +    E  Q++  AIK+ +   + 
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 376

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NA I+ Y KC ++A A + F  ++  D V+W +II A+  +G   E++ +F  ML   
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD   F  +L AC+ GG +  G+   + ++    +  +S     L D+  + G++ EA
Sbjct: 437 IEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEA 494



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 199/405 (49%), Gaps = 35/405 (8%)

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           + +++RL H+T +     C +   +E+G++ H+ ++  GF    FV + L+ +Y      
Sbjct: 1   MAESLRLLHMTRSV---ECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDF 57

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCY----------------------ALNCLGDG----- 246
             A  VFD++  RD+V WN M++ Y                      + N +  G     
Sbjct: 58  VSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNG 117

Query: 247 ----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               +I VF  M  EG++ D  TF+ ++  C  L  + LG QIHG+V++   D DV+ A+
Sbjct: 118 ESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAAS 177

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK     ++ RVF G+  KN VSW+ ++ G  QN     A+K  ++M + +   
Sbjct: 178 ALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGV 237

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
            +   AS+L SC +LS      Q+HA+A+K+   A   +  A ++ Y+KC ++  A   F
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 297

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            + +  +  ++ ++I  Y+      +++ +F +++S  +  D I+   V  AC+    +S
Sbjct: 298 DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLS 357

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           EGL+ + L I     L D        D+ G+   L EA+ +   M
Sbjct: 358 EGLQIYGLAIKSSLSL-DVCVANAAIDMYGKCQALAEAFRVFDEM 401


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 307/557 (55%), Gaps = 6/557 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI--SGI 139
           G+Q+H  ++K G    + +   ++ +Y K   FD  EK+FD M  ++I   N +I   G 
Sbjct: 187 GEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGR 246

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              GG     F+ +L D       TF +++  C     +E G++L     K GF     V
Sbjct: 247 AGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSV 306

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-G 258
            +A++ +YG  G  ++A R+F  +  ++L+ W  ++S Y+ +  G  A+  F  +  E G
Sbjct: 307 GNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELG 366

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D    +++++ C    + +LG QIHG V+K     DV VAT+LVD+YAK   +  A 
Sbjct: 367 INFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSAR 426

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQN-GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            VFD ++ K + S+N ++ GF ++ GD  + + L   +      PD VT + +LS   + 
Sbjct: 427 IVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQ 486

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           +   + R  HAY +K G    +S+ N++I+ Y+KCGSI  A Q F  +   D ++W ++I
Sbjct: 487 ASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALI 546

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            AYA HG +++S+ +FE+M      PD    L +L AC++ GL  +G+  FNLM   Y I
Sbjct: 547 SAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGI 606

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL-GAFIGACKVHGSIGLAKWAA 556
            P  EHY C+ DLLGR G L EA D++   P  P+S  L    +  CK+HG++   K A+
Sbjct: 607 KPLLEHYACMADLLGRAGYLSEAMDIIKRSPF-PKSTLLWRTLVNVCKLHGNLNFGKLAS 665

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           + LL+L P +  +Y LVSN+YASE+   + A++RK+M D    K  G SWIEI  ++H F
Sbjct: 666 KHLLDLSPVEAGSYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHF 725

Query: 617 VSSDRSHPQAVHMYAML 633
           V+SD+ HP++  +Y  L
Sbjct: 726 VASDKDHPESREIYTRL 742



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 218/416 (52%), Gaps = 16/416 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           G+ +HS+++K G  +     N VL++YVK    D  +K+FD MR RN +TW +LI G + 
Sbjct: 86  GQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            N   +       M       +  T   +L+AC   DD  +G ++H F++K GF  N FV
Sbjct: 146 DNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFV 205

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L+ +Y K GF + A +VFD +  +D+   N M+  Y     G  AI VF  +  +G 
Sbjct: 206 GTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGF 265

Query: 260 KGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +   +TF++++++C G LG  + G+Q+ GL  K  F  +  V  +++ MY  +G   +A 
Sbjct: 266 EPTDYTFTNIISTCNGDLGVEE-GKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAE 324

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL---LRDMLQGSFCPDEVTLASIL---S 372
           R+F  M+ KN++SW  ++ G+ ++G G++AV     L D L  +F  D   L +IL   S
Sbjct: 325 RMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINF--DSTLLTAILDCCS 382

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
            C +L +     Q+H + +K G    +++  AL++ Y+KC  +  A   F  +    + +
Sbjct: 383 DCNNLELGL---QIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIAS 439

Query: 433 WTSIIGAY-AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
           + +I+  +    G  ++ + +F ++    V+PD + F  +LS  ++   + +G  +
Sbjct: 440 FNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSF 495


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 208/639 (32%), Positives = 326/639 (51%), Gaps = 10/639 (1%)

Query: 9   PIFTVHFKRPLSYLTPALYQNQTT-TITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYS 67
           P  T  F R  +  T A + +  T ++     H   +L  Q++ +G         +  + 
Sbjct: 4   PAATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGL-----EPNNLTFP 58

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
              K  +K   L+  + +H+H++K      L +Q  V+ +YVKC        LF  M  R
Sbjct: 59  SVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKR 118

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++ +WN++I G    G    V   F  M ++ +R D +T   L  + +   D+++   +H
Sbjct: 119 DVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIH 178

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNCL 243
           SF +K+G   +  VS+  +  Y KCG    A  VFD +    +  V WN M++ YA    
Sbjct: 179 SFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQ 238

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+  F  M   G + D  T  SL++SC        G+ IH   I+   D D+ V  +
Sbjct: 239 CSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINT 298

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY+K G+I  A  +FD M  K  VSW  M+ G+ + GD  EA+ L   M      PD
Sbjct: 299 LISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPD 358

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VT+ S++S CG        + +  YA  NG++  L + NALI+ Y+KCGS+  A + F 
Sbjct: 359 LVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFY 418

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           ++ E  LV+WT++I   A +G  KE++ +F +M+   ++P+ I FL VL AC+H G + +
Sbjct: 419 TMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEK 478

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G   FNLM   Y I P  +HY+C+ DLLGR G L EA++ + +MP +P        + AC
Sbjct: 479 GWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSAC 538

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K+H ++ + +  A  L ELEP   V Y  ++N+YAS   W  VA +R MM+ N   K PG
Sbjct: 539 KIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPG 598

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            S +++ G+ H F   DR HP+ + +Y  L  +   M+E
Sbjct: 599 KSLVQVNGKTHEFTVEDRCHPEGLLIYETLENLALQMKE 637


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 302/552 (54%), Gaps = 41/552 (7%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           LFD++   ++ TW  LISG    G        +  +L  NVR D     S+ +AC  + D
Sbjct: 33  LFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGD 92

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           + V +++H   ++ GF  +  + +AL+D++GKC FV  AR VFD+++ +D+V W  M  C
Sbjct: 93  LVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYC 152

Query: 238 YALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           Y +NC +    I +F  M L G++ +  T SS++ +C      KLGR++HG +++   + 
Sbjct: 153 Y-VNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEG 209

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV----------GFG------ 340
           +V V+++LV+MYA +  +  A  VFD M  +++VSWN M+           G G      
Sbjct: 210 NVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMR 269

Query: 341 -------------------QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
                              QNG    A+ +L  M      P+ +T+ S L  C +L    
Sbjct: 270 KEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLR 329

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             +++H Y  ++     ++I  AL+  Y+KCG +  +   F ++   D+V W ++I A +
Sbjct: 330 GGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANS 389

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HG   ES+ +F KML   V P+S+ F+ VLS CSH  L  EGL  FN M S++ I PD+
Sbjct: 390 MHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDA 449

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           +HY+C+ D+L R G L EAYD +  MPIEP +   GA +GAC+V+ ++ L   AA +L E
Sbjct: 450 DHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFE 509

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           +EP    NY L+SN+  + + W + + +RKMMRD    K PG SW+++  ++++FV+ D+
Sbjct: 510 IEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDK 569

Query: 622 SHPQAVHMYAML 633
           S+ Q   +Y  L
Sbjct: 570 SNEQKDMIYRFL 581



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 183/349 (52%), Gaps = 39/349 (11%)

Query: 71  KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           K  A  G L   K++H   ++ G    L L N ++ ++ KCK  +    +FD+M V+++V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 131 TWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           +W ++    +NCG        FR M L+ +R + +T +S+L AC  AD I++GR +H FI
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKLGREVHGFI 202

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           L+     N +VSSALV++Y     ++ AR VFD +  RD+V WNVM++ Y LN   +  +
Sbjct: 203 LRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGL 262

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--------------------------- 281
            +F+ MR EG+K +  ++++ ++ C   G  +L                           
Sbjct: 263 GLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGC 322

Query: 282 --------GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
                   G++IHG V +  F  DV + T+LV +YAK G+++ +  VF+ M  K+VV+WN
Sbjct: 323 TNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWN 382

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
           TM++    +G G E++ L   ML     P+ VT   +LS C    ++ E
Sbjct: 383 TMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADE 431



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 57/400 (14%)

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G ++ A  +FD++   DL  W +++S +  +     AI +++ +    ++ D F   S+ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +C   G   + ++IH   I+  F+ D+++  +L+DM+ K   ++ A  VFD M  K+VV
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS-LSISCETRQVHAY 389
           SW +M   +   G  R+ + L R+M       + +T++SIL +C   + +    R+VH +
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLG---REVHGF 201

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY--------- 440
            ++N ++  + + +AL+N Y+    +  A   F S+   D+V+W  ++ AY         
Sbjct: 202 ILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERG 261

Query: 441 --AFHGLSKESIEVFE------------------------KMLSHAVRPDSIAFLEVLSA 474
              FH + KE I++ +                        KM    ++P+ I  +  L  
Sbjct: 262 LGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPG 321

Query: 475 CSH-----GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
           C++     GG    G  + +  I D  I       T L  L  + G L  +  +  +M  
Sbjct: 322 CTNLESLRGGKEIHGYVFRHWFIEDVTIT------TALVLLYAKCGDLELSRHVFNTM-- 373

Query: 530 EPRSDTLG--AFIGACKVHGSIGLAKWAAEKLLE--LEPS 565
            PR D +     I A  +HG  G +     K+L+  +EP+
Sbjct: 374 -PRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPN 412



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 96/189 (50%)

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           +V K   +L    +  L+     +G++  A  +FD +   ++ +W  ++ G  Q+G  ++
Sbjct: 1   MVSKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKK 60

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+ +   +L  +  PD+  L S+  +C +       +++H  AI+ G    L + NALI+
Sbjct: 61  AIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALID 120

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            + KC  + GA   F  +   D+V+WTS+   Y   G+ ++ I +F +M  + +R +S+ 
Sbjct: 121 MFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLT 180

Query: 468 FLEVLSACS 476
              +L AC+
Sbjct: 181 VSSILPACA 189



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 40/75 (53%)

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI      G +  AL  F  + EPDL TWT +I  +  HG  K++I+++  +LS  VRPD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 465 SIAFLEVLSACSHGG 479
               L V  AC+  G
Sbjct: 77  KFVLLSVAKACAASG 91


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 158/481 (32%), Positives = 285/481 (59%), Gaps = 6/481 (1%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  ++  GF  + F+++ L++++ +   V++AR+VFD+   R + +WN +    AL   
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT----LGSSKLGRQIHGLVIKQSFDLDVL 299
           G+  + ++  M + G+  D FT++ L+ +C      +   + G++IH  +++  +   V 
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVH 210

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V T+L+DMYA+ G +  A  VFD M  KNVVSW+ M+  + +NG   EA++L R+M+  +
Sbjct: 211 VMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNT 270

Query: 360 F--CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P+ VT+ S+L +C + +   + + +HAY ++ G+ + L + +ALI  Y++CG +  
Sbjct: 271 HDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLES 330

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
               F  + + D+V W S+I +Y  HG  +++I++FE+M+ H   P  I+F+ VL ACSH
Sbjct: 331 GQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSH 390

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV EG + F  M+ ++ I P  EHY C+ DLLGR   L EA  ++  + IEP     G
Sbjct: 391 TGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWG 450

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           + +GAC++H  + LA+ A+++L +LEP+   NY L++++YA    W +V R++K++    
Sbjct: 451 SLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRE 510

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
             KVPG SWIE+  +I++F S D  +PQ   ++A+L  +   M++   +    ++  ++D
Sbjct: 511 LQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLD 570

Query: 658 E 658
           +
Sbjct: 571 Q 571



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 196/381 (51%), Gaps = 10/381 (2%)

Query: 73  SAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
           +A+   L     +H  ++  G      L  ++++++ +    D+  K+FD+ R R I  W
Sbjct: 79  AARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVW 138

Query: 133 NTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD----DIEVGRRLHS 186
           N L     +   G +V   + RM +  V  D  T+  LL+ACV ++     ++ G+ +H+
Sbjct: 139 NALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHA 198

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            IL+ G+G +  V + L+D+Y + G V  A  VFDE+  +++V W+ M++CYA N     
Sbjct: 199 HILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYE 258

Query: 247 AIAVFNLMRLEGMKG--DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           A+ +F  M L       +  T  S++ +C    + + G+ IH  ++++  D  + V ++L
Sbjct: 259 ALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISAL 318

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MYA+ G ++    +FD M  K+VV WN+++  +G +G GR+A+K+  +M+   F P  
Sbjct: 319 ITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSH 378

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           ++  S+L +C    +  E +++    +K +G+Q  +     +++   +   +  A +   
Sbjct: 379 ISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIE 438

Query: 424 SVK-EPDLVTWTSIIGAYAFH 443
            ++ EP    W S++GA   H
Sbjct: 439 DLRIEPGPKVWGSLLGACRIH 459



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  A F  L+QGK +H++I++ GL + L + + ++ +Y +C   +  + +FD M  +++
Sbjct: 284 LQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDV 343

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL-HS 186
           V WN+LIS  G+   G      F  M+       HI+F S+L AC     +E G++L  S
Sbjct: 344 VLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFES 403

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            + + G   +    + +VDL G+   +++A ++ +++
Sbjct: 404 MVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDL 440



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 15/205 (7%)

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++    + G+ ++A+ LL         P + T   ++ S    +   +   VH   + 
Sbjct: 42  NHLIQSLCKQGNLKQALYLL----SHESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G      +   LIN +S+  ++  A + F   ++  +  W ++  A A  G   + +E+
Sbjct: 98  GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY-------T 505
           + +M    V  D   +  +L AC    + SE L  F     + H       Y       T
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKAC----VASECLVSFLQKGKEIHAHILRHGYGAHVHVMT 213

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIE 530
            L D+  R G +  A  +   MP++
Sbjct: 214 TLMDMYARFGCVSYASAVFDEMPVK 238


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 306/565 (54%), Gaps = 8/565 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            + LH   +  G      + + +  +Y K    DD  K+FD +   + + WNTL++G+  
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL-- 190

Query: 142 CGGNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            G      F RM+    VR D  T  S LRA  +A  + +GR +H + +K G   +  V 
Sbjct: 191 PGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVV 250

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           + L+ LY KCG ++ A+ +FD +   DLV +N ++S Y++N + + ++ +F  +   G +
Sbjct: 251 TGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWR 310

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            +  T  +++      G   L R +H  V+K   D D LV+T+L  +Y +  +++ A  +
Sbjct: 311 PNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSI 370

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD M  K + SWN M+ G+ QNG    AV L + M + +  P+ +T++S LS+C  L   
Sbjct: 371 FDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGAL 430

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              + VH    K  ++  + +  ALI+ Y+KCGSIA A   F  +   ++V+W ++I  Y
Sbjct: 431 SLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGY 490

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
             HG   E++++++ ML   + P S  FL V+ ACSHGGLV EG + F +M ++Y I P 
Sbjct: 491 GLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPG 550

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMP---IEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            EH TC+ DLLGR G L EA +L++  P   I P     GA +GAC VH +  LAK A++
Sbjct: 551 IEHCTCMVDLLGRAGKLNEALELISEFPQSAIGP--GVWGALLGACMVHKNSDLAKLASQ 608

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           KL EL+      Y L+SN+Y S++ + + A +R+  +     K PGC+ IEI    H F+
Sbjct: 609 KLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFM 668

Query: 618 SSDRSHPQAVHMYAMLCTVFGLMEE 642
           + D  HPQ+  +Y+ L  +   M E
Sbjct: 669 AGDHLHPQSEAIYSYLERLTAKMIE 693



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 202/386 (52%), Gaps = 13/386 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + +L+ +A+   +  G+ +H + +K GL     +   ++ +Y KC   D  + LFD M  
Sbjct: 216 ASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDN 275

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++V +N LISG    G   +    F+ +     R +  T  +++          + R L
Sbjct: 276 PDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCL 335

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+F++K     +  VS+AL  LY +   +E AR +FD +L + +  WN M+S YA N L 
Sbjct: 336 HAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLT 395

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+A+F LM+   ++ +  T SS +++C  LG+  LG+ +H ++ K+  +L+V V T+L
Sbjct: 396 EMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTAL 455

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK G+I +A  +FD M  KNVVSWN M+ G+G +G G EA+KL +DML     P  
Sbjct: 456 IDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTS 515

Query: 365 VTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
            T  S++ +C    +  E ++V     + Y I  G++        +++   + G +  AL
Sbjct: 516 STFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHC----TCMVDLLGRAGKLNEAL 571

Query: 420 QCFGSVKEPDL--VTWTSIIGAYAFH 443
           +      +  +    W +++GA   H
Sbjct: 572 ELISEFPQSAIGPGVWGALLGACMVH 597



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 175/355 (49%), Gaps = 6/355 (1%)

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           + +D    R LH   +  G+  + FV+SAL  LY K    +DAR+VFD V   D +LWN 
Sbjct: 126 RGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNT 185

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +++       G  A+  F  M   G ++ D  T +S + +        +GR +HG  +K 
Sbjct: 186 LLA----GLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKC 241

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
                  V T L+ +Y+K G++D A  +FD M   ++V++N ++ G+  NG    +V+L 
Sbjct: 242 GLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELF 301

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           +++    + P+  TL +++            R +HA+ +K  + A   +  AL   Y + 
Sbjct: 302 KELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRL 361

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
             +  A   F ++ E  + +W ++I  YA +GL++ ++ +F+ M    V+P+ I     L
Sbjct: 362 NDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTL 421

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           SAC+H G +S G ++ + +IS   +  +    T L D+  + G + EA  +   M
Sbjct: 422 SACAHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRM 475


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 207/616 (33%), Positives = 320/616 (51%), Gaps = 37/616 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+Q K +H+ I+  GL  ++    +++   V+ +      KLFD++   N   +N LI G
Sbjct: 49  LKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKG 108

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             N    +     +RRM+ D +  +  T   +L+AC       +G  +H+   K+G G +
Sbjct: 109 YSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSH 168

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +A++++Y  CG +  ARRVFD++  R LV WN M++ Y+     + A+ +F  M+ 
Sbjct: 169 ACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQE 228

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN--- 313
            G++ D FT   L++     G+  LGR +H  ++    ++D +V  +L+DMYAK GN   
Sbjct: 229 VGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKC 288

Query: 314 ----------------------------IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
                                       ID A   F+ M  KNVVSWN+++    Q G  
Sbjct: 289 AKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLY 348

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EAV L   M       ++ TL +ILSSC  +      +Q H+Y   N +    ++ NA+
Sbjct: 349 AEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAI 408

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y+KCG++  A+  F  + E + V+W  IIGA A HG  KE+IE+FEKM +  V PD 
Sbjct: 409 IDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDE 468

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I F  +LSACSH GLV  G  YF +M   + I PD EHY C+ DLLGR GLL EA  L+ 
Sbjct: 469 ITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIK 528

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            MP++P      A +GAC+ +G++ + K   ++LLEL       Y L+SN+Y+  + W D
Sbjct: 529 KMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDD 588

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
           +  + K++  N   K    S+IEI G  + F+  D+ H  +  +Y+ML     LM+    
Sbjct: 589 MKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQ---LMDHLKS 645

Query: 646 SGH-CNVLDKEMDECT 660
           +G+ C  LD E   C+
Sbjct: 646 AGYPCKHLDVEEIYCS 661



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 222/468 (47%), Gaps = 50/468 (10%)

Query: 27  YQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLH 86
           Y N +  I +   + R V    L N  TI              LK  A       G  +H
Sbjct: 109 YSNSSDPIKSLLLYRRMVCDGILPNQFTI-----------PFVLKACAAKSCYWLGVCVH 157

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN- 145
           +   KLG+ +   +QN +L++YV C       ++FD++  R +V+WN++I+G    G + 
Sbjct: 158 AQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSE 217

Query: 146 -VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
                FR M    +  D  T   LL    +  + ++GR +H  ++  G  ++  V++AL+
Sbjct: 218 EAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALM 277

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM---------- 254
           D+Y KCG ++ A+ VFD++L +D+V W  M++ YA + L D A+  FN M          
Sbjct: 278 DMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNS 337

Query: 255 -------------------RL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
                              R+   G+  +  T  ++++SC  +G   LG+Q H  +   +
Sbjct: 338 IIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNN 397

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
             L   +  +++DMYAK G +  A  VF GM  KN VSWN ++     +G G+EA+++  
Sbjct: 398 ITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFE 457

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN---GVQAFLSIENALINAYS 410
            M     CPDE+T   +LS+C S S   +T Q H + I N   G+   +     +++   
Sbjct: 458 KMQASGVCPDEITFTGLLSAC-SHSGLVDTGQ-HYFEIMNLTFGISPDVEHYACMVDLLG 515

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           + G +  A+     +  +PD+V W++++GA   +G      ++ +++L
Sbjct: 516 RRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLL 563



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 5/288 (1%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           T   L++ C +L   K  + +H  +I       VL    LV    +  ++  A ++FD +
Sbjct: 38  TLHYLIDQCISL---KQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQI 94

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
              N   +N ++ G+  + D  +++ L R M+     P++ T+  +L +C + S      
Sbjct: 95  PQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGV 154

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            VHA + K G+ +   ++NA++N Y  CG I  A + F  + E  LV+W S+I  Y+  G
Sbjct: 155 CVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMG 214

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            S+E++ +F +M    + PD    + +LS  +  G    G R+ +L +    I  DS   
Sbjct: 215 RSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLG-RFVHLHMVVTGIEIDSIVT 273

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             L D+  + G L  A  +   M ++    +    I A   HG I  A
Sbjct: 274 NALMDMYAKCGNLKCAKSVFDQM-LDKDVVSWTCMINAYANHGLIDCA 320



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 48/255 (18%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   +  G L  GKQ HS+I    +    +L N ++ +Y KC A      +F  M  +N 
Sbjct: 374 LSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNA 433

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN +I  +     G      F +M    V  D ITF  LL AC  +  ++ G+  H F
Sbjct: 434 VSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ--HYF 491

Query: 188 -ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
            I+ + FG++  V   + +VDL G+ G + +A                            
Sbjct: 492 EIMNLTFGISPDVEHYACMVDLLGRRGLLGEA---------------------------- 523

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL---DVLVA 301
                  +L++   +K D   +S+L+ +C T G+  +G+QI    +KQ  +L   +  + 
Sbjct: 524 ------ISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQI----MKQLLELGRYNSGLY 573

Query: 302 TSLVDMYAKNGNIDD 316
             L +MY+++   DD
Sbjct: 574 VLLSNMYSESQRWDD 588


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 310/561 (55%), Gaps = 4/561 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLC-NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           +K  A+ G L++G+  HS  ++LGL  +++   N +L  Y K     D E++FD M VR+
Sbjct: 114 VKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRD 173

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLH 185
           IVTWN+++ G ++ G        FR M     V+ D +   + L AC     +  GR +H
Sbjct: 174 IVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVH 233

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +++++ G   +  V ++L+D+Y KCG +  A  +F  +  R +V WN M+  YALN   +
Sbjct: 234 AYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPE 293

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A   F  M+ EG + +  T  +L+ +C    SS  GR +HG V +  F   V++ T+L+
Sbjct: 294 EAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALL 353

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +MY+K G +  +  +F  MT K +VSWN M+  +       EA+ L  ++L     PD  
Sbjct: 354 EMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYF 413

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+++++ +   L +  + RQ+H+Y ++        + NA+++ Y++CG +  + + F  +
Sbjct: 414 TMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKM 473

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              D+++W +II  YA HG  K ++E+F +M S+ ++P+   F+ VL+ACS  G+  EG 
Sbjct: 474 AGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADEGW 533

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
             FNLM  DY I+P  EHY C+TDLLGR G L E    + S+PI P     G+ + A + 
Sbjct: 534 IQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTASRN 593

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
              I +A++AAE++ ELE      Y ++S++YA    W DV R+R  M +    +    S
Sbjct: 594 RNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGRWEDVQRIRSSMMEKGLRRTDARS 653

Query: 606 WIEIAGEIHTFVSSDRSHPQA 626
            +E+ G   +FV+ D +HPQ+
Sbjct: 654 IVELHGSSCSFVNGDMTHPQS 674



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 175/356 (49%), Gaps = 6/356 (1%)

Query: 133 NTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           N +I G  + G        +R ML    R D  TF  +++ C +   +E GR  HS  ++
Sbjct: 76  NVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIR 135

Query: 191 VGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           +G  G   +  ++L+  Y K G V DA RVFD +  RD+V WN MV  Y  N LG  A+ 
Sbjct: 136 LGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALD 195

Query: 250 VFNLMRLEGM--KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
            F  M  EG+  + D     + + +C    +   GR++H  VI+   + DV V TSL+DM
Sbjct: 196 CFREMH-EGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDM 254

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K G I  A  +F  M ++ VV+WN M+ G+  NG   EA      M       + VT 
Sbjct: 255 YCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTA 314

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            ++L++C     S   R VH Y  ++     + +E AL+  YSK G +  +   FG +  
Sbjct: 315 INLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTN 374

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             LV+W ++I AY +  +  E+I +F ++L+  + PD      V+ A    GL+ +
Sbjct: 375 KTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQ 430



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 159/303 (52%), Gaps = 3/303 (0%)

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D  L NV++  +A   L + A+A +  M   G + D FTF  +V  C  LG+ + GR  H
Sbjct: 71  DAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAH 130

Query: 287 GLVIKQSF-DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
              I+      +V    SL+  YAK G + DA RVFDGM  +++V+WN+MV G+  NG G
Sbjct: 131 SAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLG 190

Query: 346 REAVKLLRDMLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             A+   R+M +G     D V + + L++C   S   + R+VHAY I++G++  + +  +
Sbjct: 191 ALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTS 250

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y KCG+IA A   F ++    +VTW  +IG YA +G  +E+ + F +M +   + +
Sbjct: 251 LLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVE 310

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            +  + +L+AC+       G R  +  ++    LP     T L ++  +VG +  +  + 
Sbjct: 311 VVTAINLLAACAQTESSLYG-RSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIF 369

Query: 525 ASM 527
             M
Sbjct: 370 GQM 372



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            +L+ +++  G +  AL    S   PD      +I  +A  GL + ++  +  ML+   R
Sbjct: 47  KSLVLSHAAAGRMHDALAAVRS--SPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGAR 104

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVGLLVEA 520
           PD   F  V+  C+  G + EG    +  I     L  SE YT   L     ++G++ +A
Sbjct: 105 PDRFTFPVVVKCCARLGALEEGRAAHSAAIRLG--LVGSEVYTGNSLLAFYAKLGMVADA 162

Query: 521 YDLLASMPIE 530
             +   MP+ 
Sbjct: 163 ERVFDGMPVR 172


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 324/592 (54%), Gaps = 19/592 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L + A  G +  G+ +H+  +K G C+ + + N ++++Y KC   ++   +F  M 
Sbjct: 160 FSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRME 219

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNTL++G++  G ++     F         L   T+++++  C     + + R+
Sbjct: 220 TRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQ 279

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LHS +LK GF     V +AL+D Y K G ++ A  VF  +   +++V W  M+      C
Sbjct: 280 LHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMID----GC 335

Query: 243 LGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           + +G    A A+F+ MR +G+  +  T+S+++    T+  +    QIH  VIK +++   
Sbjct: 336 IQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TVSEASFPPQIHAQVIKTNYECTP 391

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V T+L+  Y+K  + ++A  +F  +  K+VVSW+ M+  + Q GD   A      M   
Sbjct: 392 TVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMH 451

Query: 359 SFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P+E T++S + +C S +   +  RQ HA +IK+     L + +AL++ Y++ GSI  
Sbjct: 452 GLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIEN 511

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A   F    + DL++W S++  YA HG S+++++VF +M    +  D + FL V+  C+H
Sbjct: 512 AQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAH 571

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV EG +YF+LM+ DY I P  +HY C+ DL  R G L E   L+  MP         
Sbjct: 572 AGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWR 631

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           A +GAC+VH ++ L K AAEKLL LEP     Y L+SN+Y++   W +   +RK+M    
Sbjct: 632 ALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKK 691

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHC 649
             K  GCSWI+I  ++H F++SD+SHP +  +YA L  +   +++    G+C
Sbjct: 692 VRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQE---GYC 740



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 211/399 (52%), Gaps = 8/399 (2%)

Query: 82  GKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           GKQLH+  ++ G  +  + +   ++ +Y+   +  D  K+F+ M  RN+VTW +L++G I
Sbjct: 74  GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 141 NCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
             G   +V   F RM  + V  +  TF+S+L        +++G+ +H+  +K G     F
Sbjct: 134 QAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVF 193

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+++Y KCG VE+AR VF  +  RD+V WN +++   LN     A+ +F+  R   
Sbjct: 194 VCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSI 253

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
                 T+S+++N C  L    L RQ+H  V+K  F     V T+L+D Y K G +D A 
Sbjct: 254 TMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKAL 313

Query: 319 RVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            VF  M+ ++NVVSW  M+ G  QNGD   A  L   M +    P+++T ++IL    ++
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TV 369

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S +    Q+HA  IK   +   ++  AL+ +YSK  S   AL  F  + + D+V+W++++
Sbjct: 370 SEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAML 429

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             YA  G    +   F KM  H ++P+       + AC+
Sbjct: 430 TCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACA 468



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 198/401 (49%), Gaps = 10/401 (2%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S YS  + + A    L   +QLHS ++K G  +  ++   ++  Y K    D    +F  
Sbjct: 259 STYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLL 318

Query: 124 MR-VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           M   +N+V+W  +I G I  G        F RM  D V  + +T++++L       +   
Sbjct: 319 MSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TVSEASF 374

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
             ++H+ ++K  +     V +AL+  Y K    E+A  +F  +  +D+V W+ M++CYA 
Sbjct: 375 PPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQ 434

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVL 299
               +GA   F  M + G+K + FT SS +++C +  +   LGRQ H + IK      + 
Sbjct: 435 AGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALC 494

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V+++LV MYA+ G+I++A  VF+  T ++++SWN+M+ G+ Q+G  ++A+ + R M    
Sbjct: 495 VSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEG 554

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGA 418
              D +T  S++  C    +  E +Q     +++ G+   +     +++ YS+ G +   
Sbjct: 555 IDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDET 614

Query: 419 LQCFGSVKEPDLVT-WTSIIGAYAFHGLSKESIEVFEKMLS 458
           +     +  P   T W +++GA   H   +      EK+LS
Sbjct: 615 MSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLS 655



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 168/308 (54%), Gaps = 2/308 (0%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           +++ C    D  +G++LH+  ++ G    +  V ++LVD+Y     V D R+VF+ +L R
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V W  +++ Y    +    +++F  MR EG+  + FTFSS+++   + G   LG+ +H
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH 180

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
              IK      V V  SL++MYAK G +++A  VF  M  +++VSWNT++ G   NG   
Sbjct: 181 AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDL 240

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           EA++L  D         E T +++++ C +L      RQ+H+  +K+G  ++ ++  AL+
Sbjct: 241 EALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALM 300

Query: 407 NAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +AY+K G +  AL  F  +    ++V+WT++I     +G    +  +F +M    V P+ 
Sbjct: 301 DAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPND 360

Query: 466 IAFLEVLS 473
           + +  +L+
Sbjct: 361 LTYSTILT 368



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 142/288 (49%), Gaps = 8/288 (2%)

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           ++  CG++    LG+Q+H L ++   D  D+ V TSLVDMY    ++ D  +VF+GM  +
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           NVV+W +++ G+ Q G   + + L   M      P+  T +S+LS   S  +    + VH
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH 180

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A +IK G  + + + N+L+N Y+KCG +  A   F  ++  D+V+W +++     +G   
Sbjct: 181 AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDL 240

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACS---HGGLVSEGLRYFNLMISDYHILPDSEHY 504
           E++++F    S         +  V++ C+   H GL  +   + +++   +H   +    
Sbjct: 241 EALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQ--LHSSVLKHGFHSYGNV--M 296

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           T L D   + G L +A D+   M       +  A I  C  +G I LA
Sbjct: 297 TALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLA 344



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           L  I+  CGS+      +Q+HA  ++ G     + +  +L++ Y    S+    + F  +
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM 117

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            + ++VTWTS++  Y   G+  + + +F +M +  V P+   F  VLS  +  G+V  G
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG 176


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/587 (32%), Positives = 316/587 (53%), Gaps = 7/587 (1%)

Query: 45  LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV 104
           L  ++R   T+  + H+    ++ A      FG    G Q H+  +K      + + + +
Sbjct: 100 LFQRMRAENTL-PNGHTFSGVFTAASSSPETFG----GLQAHALAIKTSNFYDVFVGSSL 154

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDH 162
           +++Y K     D  K+FD +  RN V+W T+ISG  +          F  M  +    D 
Sbjct: 155 INMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDK 214

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
             + S+L A    D +  G+++H   LK G      V +ALV +YGKCG ++DA + F+ 
Sbjct: 215 FIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFEL 274

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
              +D + W+ M++ YA       A+ +F  M L G K   FTF  ++N+C  +G+ + G
Sbjct: 275 SGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEG 334

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           +QIHG  +K  ++  +   T+LVDMYAK G++ DA + FD +   ++V W +M+ G+ QN
Sbjct: 335 KQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQN 394

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G+   A+ L   M      P E+T+AS+L +C SL+   + +Q+HA  IK G    + I 
Sbjct: 395 GENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIG 454

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           +AL   Y+KCGS+      F  +   D++TW ++I   + +G   +++E+FE++     +
Sbjct: 455 SALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTK 514

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD + F+ VLSACSH GLV  G  YF +M+ ++ I+P  EHY C+ D+L R G L E  +
Sbjct: 515 PDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKE 574

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
            + S  I+         +GAC+ + +  L  +A EKL+EL   +   Y L+S++Y +   
Sbjct: 575 FIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGR 634

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
             DV R+R++M+    +K PGCSWIE+  ++H FV  D+ HPQ V +
Sbjct: 635 SDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKI 681



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 222/410 (54%), Gaps = 4/410 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ+GK +H+ +++ G  + + L N ++++Y KC +    + +F+ +  +++V+WN LI+G
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 139 IINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
               G      V   F+RM  +N   +  TF+ +  A   + +   G + H+  +K    
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNF 145

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            + FV S+L+++Y K G + DAR+VFD +  R+ V W  ++S YA+  +   A  +F LM
Sbjct: 146 YDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLM 205

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R E    D F ++S++++         G+QIH L +K        V  +LV MY K G +
Sbjct: 206 RREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCL 265

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           DDA + F+    K+ ++W+ M+ G+ Q GD  EA+ L  +M      P E T   ++++C
Sbjct: 266 DDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINAC 325

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             +    E +Q+H Y++K G +  +    AL++ Y+KCGS+  A + F  +KEPD+V WT
Sbjct: 326 SDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWT 385

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           S+I  YA +G ++ ++ ++ +M    + P  +    VL ACS    + +G
Sbjct: 386 SMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQG 435



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 193/366 (52%), Gaps = 11/366 (3%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
            H +F  LL  C +  D++ G+ +H+ +L+ G   + +++++LV+LY KCG +  A+ VF
Sbjct: 9   QHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVF 68

Query: 221 DEVLCRDLVLWNVMVSCYALN-CLGDG-AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           + +  +D+V WN +++ Y+    +G    + +F  MR E    +  TFS +  +  +   
Sbjct: 69  ESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPE 128

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           +  G Q H L IK S   DV V +SL++MY K G + DA +VFD +  +N VSW T++ G
Sbjct: 129 TFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISG 188

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           +       EA +L   M +     D+    S+LS+     +    +Q+H  A+KNG+ + 
Sbjct: 189 YAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSI 248

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            S+ NAL+  Y KCG +  AL+ F    + D +TW+++I  YA  G S E++ +F  M  
Sbjct: 249 ASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHL 308

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE----HYTCLTDLLGRV 514
           +  +P    F+ V++ACS  G + EG +     I  Y +    E      T L D+  + 
Sbjct: 309 NGNKPSEFTFVGVINACSDIGALEEGKQ-----IHGYSLKAGYECQIYFMTALVDMYAKC 363

Query: 515 GLLVEA 520
           G LV+A
Sbjct: 364 GSLVDA 369



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 130/269 (48%), Gaps = 3/269 (1%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M L  +   + +F  L+  C      + G+ IH  +++      V +  SLV++YAK G+
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-GREAV-KLLRDMLQGSFCPDEVTLASIL 371
           I  A  VF+ +T K+VVSWN ++ G+ Q G  G   V +L + M   +  P+  T + + 
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           ++  S   +    Q HA AIK      + + ++LIN Y K G +  A + F ++ E + V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W +II  YA   ++ E+ E+F  M       D   +  VLSA +   LV  G +   L 
Sbjct: 181 SWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLA 240

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + +  +L  +     L  + G+ G L +A
Sbjct: 241 LKN-GLLSIASVGNALVTMYGKCGCLDDA 268


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 184/569 (32%), Positives = 312/569 (54%), Gaps = 6/569 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK   +  + Q GK++H  ++K GL   + + N ++ +Y +C   +    +FD+M  R++
Sbjct: 101 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 160

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W+T+I  +             R M    VR   +   S++       ++ +G+ +H++
Sbjct: 161 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 220

Query: 188 ILKVGFG--LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALNCLG 244
           +++      +    ++AL+D+Y KCG +  AR++F+ +  + +V W  M++ C   N L 
Sbjct: 221 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 280

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           +G   +F  M+ E +  +  T  SL+  CG  G+ +LG+Q+H  +++  F + + +AT+L
Sbjct: 281 EGT-KLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATAL 339

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           VDMY K  +I +A  +FD    ++V+ W  M+  + Q     +A  L   M      P +
Sbjct: 340 VDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 399

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           VT+ S+LS C         + VH+Y  K  V+    +  AL++ Y+KCG I  A + F  
Sbjct: 400 VTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE 459

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
               D+  W +II  +A HG  +E++++F +M    V+P+ I F+ +L ACSH GLV+EG
Sbjct: 460 AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEG 519

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            + F  M+  + ++P  EHY C+ DLLGR GLL EA++++ SMPI+P +   GA + AC+
Sbjct: 520 KKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACR 579

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H +  L + AA +LLE+EP       L+SN+YA+   W D A +RK M+     K PG 
Sbjct: 580 LHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGH 639

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           S IE+ G +H F+  D+SHPQ   +  ML
Sbjct: 640 SVIEVNGTVHEFLMGDQSHPQIRRINEML 668



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 191/351 (54%), Gaps = 3/351 (0%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S+L+AC Q    ++G+ +H F+LK G   + FV +AL+ +YG+C  VE AR VFD+++ R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D+V W+ M+   + N   D A+ +   M    ++       S+VN      + ++G+ +H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 287 GLVIKQSFD--LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
             VI+ S +  + V   T+L+DMYAK G++  A ++F+G+T K VVSW  M+ G  ++  
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             E  KL   M + +  P+E+T+ S++  CG        +Q+HAY ++NG    L++  A
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATA 338

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y KC  I  A   F S +  D++ WT+++ AYA      ++  +F++M +  VRP 
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPT 398

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
            +  + +LS C+  G +  G ++ +  I    +  D    T L D+  + G
Sbjct: 399 KVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCG 448


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 321/583 (55%), Gaps = 5/583 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G +LH      G    + + N +L +Y K K  D   ++F  M  +++V+W+++I
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 137 SGI-INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           +G   N       Y+ R +L +V+ + +TF + L AC     +  G+ +H+++L+ G G 
Sbjct: 473 AGFCFNHRSFDALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGS 532

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
             +V +AL+DLY KCG    A   F     +D+V WN+M+S +  + LGD A+++FN M 
Sbjct: 533 EGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMM 592

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
              +        S + +C  LG   +G ++H L   + F   V+VA +L++MYAK+ +ID
Sbjct: 593 YTSL--GRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHID 650

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A  VF  M  K+VVSW++M+ GF  N    +A+   R ML G   P+ VT  + LS+C 
Sbjct: 651 KAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYML-GHVKPNSVTFIAALSACA 709

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           +       +++HAY ++ G+ +   + NAL++ Y KCG  + A   F    E D+V+W  
Sbjct: 710 ATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNI 769

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++  +  HGL   ++ +F +M+     PD + F+ ++ ACS  G+V +G   F+     +
Sbjct: 770 MLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEKF 828

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I+P+ +HY C+ DLL RVG L EAY+L+  MPI+P +   GA +  C++H  + L + A
Sbjct: 829 SIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELA 888

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
           A+ +LELEP+    + L+ ++Y     W  VAR+RK MR+    +  GCSW+E+ G  H 
Sbjct: 889 AKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHA 948

Query: 616 FVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           F++ D SHPQ   +  +L  ++  M+    +   ++ DKE+ E
Sbjct: 949 FLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSE 991



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 204/392 (52%), Gaps = 9/392 (2%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           L L N +L + V+        ++F +M  R++ +WN ++ G    G        + RML 
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             +R D  TF  +LR C    D  +GR +H+ +L+ GFG    V +ALV +Y KCG +  
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D + WN M++ +  N   +  + +F  M    ++ +  T +S+  + G 
Sbjct: 251 ARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGM 310

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L      +++HG  +K+ F +DV    SL+ MY   G + DA ++F  M  K+ +SW  M
Sbjct: 311 LSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL---ASILSSCGSLSISCETRQVHAYAIK 392
           + G+ +NG   +A+++   M   +  PD+VT+    +  +  G L +     ++H  A  
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGI---KLHELAQN 427

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G   ++ + NAL+  Y+K   I  A++ F  + E D+V+W+S+I  + F+  S +++  
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYY 487

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           F  ML H V+P+S+ F+  LSAC+  G +  G
Sbjct: 488 FRYMLGH-VKPNSVTFIAALSACAATGALRSG 518



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 206/381 (54%), Gaps = 5/381 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+++H+H+++ G  +++ + N ++ +Y KC       K+FD M + + ++WN +I+G 
Sbjct: 214 RMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGH 273

Query: 140 I---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                C   +   F  ML + V+ + +T  S+  A     ++   + +H F +K GF ++
Sbjct: 274 FENHECEAGLE-LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAID 332

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
               ++L+ +Y   G + DA ++F  +  +D + W  M+S Y  N   D A+ V+ LM L
Sbjct: 333 VAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +  D  T +S + +C  LG   +G ++H L   + F   V+VA +L++MYAK+ +ID 
Sbjct: 393 HNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  M  K+VVSW++M+ GF  N    +A+   R ML G   P+ VT  + LS+C +
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYML-GHVKPNSVTFIAALSACAA 511

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
                  +++HAY ++ G+ +   + NAL++ Y KCG  + A   F    E D+V+W  +
Sbjct: 512 TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIM 571

Query: 437 IGAYAFHGLSKESIEVFEKML 457
           +  +  HGL   ++ +F +M+
Sbjct: 572 LSGFVAHGLGDIALSLFNQMM 592



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 172/322 (53%), Gaps = 13/322 (4%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           +RAC +AD         SF L++G        +A++ +  + G +  A RVF ++  RD+
Sbjct: 116 MRACARAD-----AEHPSFGLRLG--------NAMLSMLVRFGEIWHAWRVFAKMPERDV 162

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
             WNVMV  Y      + A+ ++  M   GM+ D +TF  ++ +CG +   ++GR++H  
Sbjct: 163 FSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAH 222

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V++  F  +V V  +LV MYAK G+I  A +VFDGM   + +SWN M+ G  +N +    
Sbjct: 223 VLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAG 282

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++L   ML+    P+ +T+ S+  + G LS     +++H +A+K G    ++  N+LI  
Sbjct: 283 LELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQM 342

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+  G +  A + F  ++  D ++WT++I  Y  +G   +++EV+  M  H V PD +  
Sbjct: 343 YTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTI 402

Query: 469 LEVLSACSHGGLVSEGLRYFNL 490
              L+AC+  G +  G++   L
Sbjct: 403 ASALAACACLGRLDVGIKLHEL 424


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 185/566 (32%), Positives = 309/566 (54%), Gaps = 8/566 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           SFY+  +  S       Q +Q+H+ ++ LGL     L  +++H            ++FD+
Sbjct: 22  SFYASLIDSSTHKA---QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDD 78

Query: 124 MRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +    +  WN +I G    N   +    + +M L  V  D  TF  LL+AC     +++G
Sbjct: 79  LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMG 138

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYA 239
           R +H+ + ++GF  + FV + L+ LY KC  +  AR VF+ +    R +V W  +VS YA
Sbjct: 139 RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N     A+ +F+ MR   +K D     S++N+   L   + GR IH  V+K   + +  
Sbjct: 199 QNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPD 258

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  SL  MYAK G +  A  +FD M + N++ WN M+ G+ +NG  ++A+ L  +M+   
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD +++ S +S+C  +    + R +  Y  ++  +  + I +ALI+ ++KCGS+  A 
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F    + D+V W+++I  Y  HG ++E+I ++  M    V P+ + FL +L AC+H G
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           +V EG  +FN M +D+ I P  +HY C+ DLLGR G L +AY+++  MP++P     GA 
Sbjct: 439 MVREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGAL 497

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + ACK H  + L K+AA++L  ++PS   +Y  +SN+YA+ R W  VA +R  M++   +
Sbjct: 498 LSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           K  GCSW+E+ G +  F   D+SHP+
Sbjct: 558 KDVGCSWVEVRGRLEGFRVGDKSHPR 583


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 307/559 (54%), Gaps = 9/559 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QL S   K GL + +   + +LH+Y KC    D  ++FD M  RN V+WN LI+G + 
Sbjct: 110 GAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVE 169

Query: 142 CGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F  M  + +  D  TF +LL A   ++   +  +LH  I+K G  L   V
Sbjct: 170 SGKVLQALELFINMETERLVPDEATFAALLTAFDDSNYF-LMHQLHGKIVKYGSALGLTV 228

Query: 200 SSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLE 257
           S+A +  Y +CG + ++RR+FD++   RDL+ WN M+  Y  + +   A+  F  ++R  
Sbjct: 229 SNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFVRMIRES 288

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-NGN--I 314
           G++ D ++F+S++++C      + GR IHGLVIK   +    V  +L+ MY + +GN  +
Sbjct: 289 GVQLDMYSFTSIISTCPEHDDHQ-GRAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMM 347

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +DAC+ FD +  K+ VSWN+M+ G+ Q+    +A++  R M   +   DE   ++ L SC
Sbjct: 348 EDACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSC 407

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
             L++    RQ+H   I +G  +   + ++LI  YSK G +  A + F    +   V W 
Sbjct: 408 SELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWN 467

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           S+I  YA HG +     +F +M+   V  D + F+ ++++CSH GLV EG    N M + 
Sbjct: 468 SMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETR 527

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I    EHY C  DL GR G L +A +L+ SMP EP +      +GAC++HG++ LA  
Sbjct: 528 YGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGNMELASE 587

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
            A  LL  EP +   Y L+S++Y+    W D A +++ M++    KVPG SWIE+  E+H
Sbjct: 588 VASHLLVSEPKQHSTYILLSSMYSGLGMWSDRAIVQREMKNRGLSKVPGWSWIEVKNEVH 647

Query: 615 TFVSSDRSHPQAVHMYAML 633
           +F + DRSHP+   +Y ML
Sbjct: 648 SFNAEDRSHPRMDEIYEML 666



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 202/411 (49%), Gaps = 21/411 (5%)

Query: 102 NQVLHVY-VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNV 158
           NQ+L  Y +         ++FDE+   +  +WN+L++  ++ G +   +   R M    V
Sbjct: 28  NQLLTAYSLSPLGLAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQGV 87

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
             +     S LR+   A    +G +L S   K G   N F +SAL+ +Y KCG V DARR
Sbjct: 88  AANTFALGSSLRSAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARR 147

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VFD +  R+ V WN +++ Y  +     A+ +F  M  E +  D  TF++L+ +     +
Sbjct: 148 VFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDD-SN 206

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVV 337
             L  Q+HG ++K    L + V+ + +  Y++ G + ++ R+FD +  +++++SWN M+ 
Sbjct: 207 YFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLG 266

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            +  +G   +A+     M++ S    D  +  SI+S+C       + R +H   IKNG++
Sbjct: 267 AYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHD-DHQGRAIHGLVIKNGLE 325

Query: 397 AFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
               + NALI  Y++      +  A +CF S+   D V+W S++  Y+ H LS +++  F
Sbjct: 326 GATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFF 385

Query: 454 EKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMIS 493
             M S  +R D  AF   L +CS           HG ++  G    N + S
Sbjct: 386 RCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSS 436



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL+  ++   LQ G+Q+H  I+  G  +   + + ++ +Y K    DD +K F+E  
Sbjct: 400 FSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEAD 459

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V WN++I G    G    V   F  M+   V LDH+TF  L+ +C  A  ++ G  
Sbjct: 460 KGSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSE 519

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
            L++   + G  L     +  VDLYG+ G +E A+ + D +    D ++W  ++
Sbjct: 520 ILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLL 573


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 291/472 (61%), Gaps = 4/472 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +++LL AC+    +  G+R+H+ ++K  +    ++ + L+  YGKC  +EDAR+V DE+ 
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            +++V W  M+S Y+       A++VF  +MR +G K + FTF++++ SC       LG+
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG-KPNEFTFATVLTSCIRASGLALGK 172

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIHGL++K ++D  + V +SL+DMYAK G I++A  +F+ +  ++VVS   ++ G+ Q G
Sbjct: 173 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLG 232

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+++ + +      P+ VT AS+L++   L++    +Q H + ++  +  +  ++N
Sbjct: 233 LDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 292

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VR 462
           +LI+ YSKCG+++ A + F ++ E   ++W +++  Y+ HGL +E +E+F  M     V+
Sbjct: 293 SLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVK 352

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMIS-DYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           PD++  L VLS CSHG +   GL  ++ M++ +Y I PD+EHY C+ D+LGR G + EA+
Sbjct: 353 PDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAF 412

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           + +  MP +P +  LG+ +GAC+VH S+ + ++   +L+E+EP    NY ++SN+YAS  
Sbjct: 413 EFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAG 472

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            W DV  +R MM      K PG SWI+    +H F ++DR+HP+   + A +
Sbjct: 473 RWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKM 524



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 147/279 (52%), Gaps = 9/279 (3%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G +  +  + +L+N+C    + + G+++H  +IK  +     + T L+  Y K   
Sbjct: 42  MVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 101

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA +V D M  KNVVSW  M+  + Q G   EA+ +  +M++    P+E T A++L+S
Sbjct: 102 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTS 161

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C   S     +Q+H   +K    + + + ++L++ Y+K G I  A + F  + E D+V+ 
Sbjct: 162 CIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSC 221

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR----YFN 489
           T+II  YA  GL +E++E+F+++ S  +RP+ + +  +L+A S   L+  G +       
Sbjct: 222 TAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLR 281

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             +  Y +L +S     L D+  + G L  A  L  +MP
Sbjct: 282 RELPFYAVLQNS-----LIDMYSKCGNLSYAQRLFDNMP 315



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 8/217 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   +    L  GKQ H H+++  L     LQN ++ +Y KC      ++LFD M 
Sbjct: 256 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP 315

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGR 182
            R  ++WN ++ G      G  V   FR M  +  V+ D +T  ++L  C      + G 
Sbjct: 316 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGL 375

Query: 183 RLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDL--VLWNVMVSCY 238
            ++  ++   +G+         +VD+ G+ G +++A      +  +    VL +++ +C 
Sbjct: 376 SIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 435

Query: 239 ALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
               +  G      L+ +E    G+Y   S+L  S G
Sbjct: 436 VHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAG 472


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 173/518 (33%), Positives = 286/518 (55%), Gaps = 31/518 (5%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           + RM    + +D  +F  LL+A  +   +  G  +H    K+GF  + FV + LV +Y  
Sbjct: 110 YERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAA 169

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG + +AR +FD++  RD+V W++M+  Y  + L + A+ +F  M+   ++ D    S++
Sbjct: 170 CGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTV 229

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           +++CG  G+   G+ IH  +++ +  +D  + ++LV MYA  G++D A  +F+ MT KN+
Sbjct: 230 LSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNL 289

Query: 330 VS-------------------------------WNTMVVGFGQNGDGREAVKLLRDMLQG 358
           V+                               W+ M+ G+ ++   +EA+ L  +M   
Sbjct: 290 VASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSL 349

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              PD+VT+ S++++C  L    + + +H +  KNG    L I NALI  Y+KCGS+  A
Sbjct: 350 GIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERA 409

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  +   ++++WT +I A+A HG +  ++  F +M    + P+ I F+ VL ACSH 
Sbjct: 410 RRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHA 469

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLV EG + F  MI++++I P   HY C+ DL GR  LL EA +L+ +MP+ P     G+
Sbjct: 470 GLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGS 529

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            + AC+VHG I L ++AA++LLEL+P     +  +SN+YA  R W DV ++RK+M+    
Sbjct: 530 LMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGI 589

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
            K  GCS  E+  EIH F+ +DRSH  A  +Y  L  V
Sbjct: 590 SKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEV 627



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 201/425 (47%), Gaps = 57/425 (13%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  ++   L +G ++H    KLG  +   +Q  ++ +Y  C    +   +FD+M 
Sbjct: 125 FPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMF 184

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++VTW+ +I G    G   +    F  M   NV  D +  +++L AC +A ++  G+ 
Sbjct: 185 HRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKM 244

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGF------------------------------- 212
           +H FI++    ++  + SALV +Y  CG                                
Sbjct: 245 IHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQ 304

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +E+AR VF++++ +DLV W+ M+S YA +     A+ +FN M+  G+K D  T  S++ +
Sbjct: 305 IENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITA 364

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  LG+    + IH  V K  F   + +  +L++MYAK G+++ A R+FD M  KNV+SW
Sbjct: 365 CAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISW 424

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             M+  F  +GD   A++    M   +  P+ +T   +L +C            HA  ++
Sbjct: 425 TCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACS-----------HAGLVE 473

Query: 393 NGVQAFLSIENA------------LINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
            G + F S+ N             +++ + +   +  AL+   ++   P+++ W S++ A
Sbjct: 474 EGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAA 533

Query: 440 YAFHG 444
              HG
Sbjct: 534 CRVHG 538



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 38/367 (10%)

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           +  + V+  MR +G+  D F+F  L+ +   + S   G +IHGL  K  FD D  V T L
Sbjct: 104 EKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGL 163

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V MYA  G I +A  +FD M  ++VV+W+ M+ G+ Q+G   +A+ L  +M   +  PDE
Sbjct: 164 VRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDE 223

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS---------- 414
           + L+++LS+CG        + +H + ++N +     +++AL+  Y+ CGS          
Sbjct: 224 MMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEK 283

Query: 415 ---------------------IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
                                I  A   F  + + DLV W+++I  YA     +E++ +F
Sbjct: 284 MTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLF 343

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
            +M S  ++PD +  L V++AC+H G + +  ++ +L +              L ++  +
Sbjct: 344 NEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAK 402

Query: 514 VGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
            G L  A  +   M   PR + +     I A  +HG  G A     + +E E  +P    
Sbjct: 403 CGSLERARRIFDKM---PRKNVISWTCMISAFAMHGDAGSALRFFHQ-MEDENIEPNGIT 458

Query: 572 LVSNVYA 578
            V  +YA
Sbjct: 459 FVGVLYA 465



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 154/327 (47%), Gaps = 38/327 (11%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    + G L  GK +H  IM+  +     LQ+ ++ +Y  C + D    LF++M  
Sbjct: 227 STVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTP 286

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRMLLDN--------------------------- 157
           +N+V    +++G    G   N    F +M+  +                           
Sbjct: 287 KNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEM 346

Query: 158 ----VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
               ++ D +T  S++ AC     ++  + +H F+ K GFG    +++AL+++Y KCG +
Sbjct: 347 QSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSL 406

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           E ARR+FD++  ++++ W  M+S +A++     A+  F+ M  E ++ +  TF  ++ +C
Sbjct: 407 ERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYAC 466

Query: 274 GTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVS 331
              G  + GR+I + ++ + +     +    +VD++ +   + +A  + + M  A NV+ 
Sbjct: 467 SHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVII 526

Query: 332 WNTMVVGFGQNGD---GREAVKLLRDM 355
           W +++     +G+   G  A K L ++
Sbjct: 527 WGSLMAACRVHGEIELGEFAAKRLLEL 553


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 304/580 (52%), Gaps = 15/580 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  +       G+ +H H +  GL   L +   +L +YVKC    D   +F  M  R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 129 IVTWNTLISGIINCG--GNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +V WN +++G  + G   +   +    +M +  +R +  T  +LL    Q   +  G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 185 HSFILKVGFGLN----------CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           H++ ++     N            + +AL+D+Y KCG +  ARRVFD +  R+ V W+ +
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +  + L      A  +F  M  +G+      + +S + +C +L   ++G Q+H L+ K  
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 370

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
              D+    SL+ MYAK G ID A  +FD M  K+ VS++ +V G+ QNG   EA  + +
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M   +  PD  T+ S++ +C  L+     R  H   I  G+ +  SI NALI+ Y+KCG
Sbjct: 431 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCG 490

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            I  + Q F  +   D+V+W ++I  Y  HGL KE+  +F +M +    PD + F+ +LS
Sbjct: 491 RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 550

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           ACSH GLV EG  +F++M   Y + P  EHY C+ DLL R G L EAY+ + SMP+    
Sbjct: 551 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
               A +GAC+V+ +I L K  +  + EL P    N+ L+SN+Y++   + + A +R + 
Sbjct: 611 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 670

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +     K PGCSWIEI G +H FV  D+SHPQ+  +Y  L
Sbjct: 671 KVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 195/382 (51%), Gaps = 17/382 (4%)

Query: 120 LFDEMRVRNIVTWNTLI----SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           LFD++   ++ T+N LI    S       +    +RRML   V  ++ TF   L+AC   
Sbjct: 79  LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D   GR +H   +  G   + FVS+AL+D+Y KC  + DA  +F  +  RDLV WN M+
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAML 198

Query: 236 SCYALNCLGDGAIA--VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI--- 290
           + YA + +   A+A  +   M++  ++ +  T  +L+      G+   G  +H   I   
Sbjct: 199 AGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRAC 258

Query: 291 -------KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
                  K      VL+ T+L+DMYAK G++  A RVFD M A+N V+W+ ++ GF    
Sbjct: 259 LHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCS 318

Query: 344 DGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
              +A  L + ML    C     ++AS L +C SL       Q+HA   K+GV A L+  
Sbjct: 319 RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 378

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N+L++ Y+K G I  A+  F  +   D V++++++  Y  +G ++E+  VF+KM +  V 
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 463 PDSIAFLEVLSACSHGGLVSEG 484
           PD+   + ++ ACSH   +  G
Sbjct: 439 PDAATMVSLIPACSHLAALQHG 460



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 169/346 (48%), Gaps = 28/346 (8%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+  A    L+ G+QLH+ + K G+   L+  N +L +Y K    D    LFDEM V
Sbjct: 344 ASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV 403

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+++ L+SG +  G     +  F++M   NV  D  T  SL+ AC     ++ GR  
Sbjct: 404 KDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS 463

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++  G      + +AL+D+Y KCG ++ +R+VF+ +  RD+V WN M++ Y ++ LG
Sbjct: 464 HGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLG 523

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-----HGLVIKQSFDLDVL 299
             A A+F  M   G   D  TF  L+++C   G    G+       HG  +    +  + 
Sbjct: 524 KEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI- 582

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG---FGQNGD-GREAVKLLRDM 355
               +VD+ ++ G +D+A      M  +  V     ++G     +N D G++  ++++++
Sbjct: 583 ---CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQEL 639

Query: 356 ---LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
                G+F    V L++I S+ G    + E R      I   VQ F
Sbjct: 640 GPEGTGNF----VLLSNIYSAAGRFDEAAEVR------IIQKVQGF 675



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 25/129 (19%)

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG--LSKESIEVFEKMLSHAVRPDSIAFLE 470
           G ++ A   F  +  PD+ T+  +I AY+      + + + ++ +ML H V P++  F  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 471 VLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            L ACS           H   +  GL+  +L +S           T L D+  +   L +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQA-DLFVS-----------TALLDMYVKCACLPD 178

Query: 520 AYDLLASMP 528
           A  + A+MP
Sbjct: 179 AAHIFATMP 187


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 315/621 (50%), Gaps = 64/621 (10%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF--------------- 121
           G+++   QLH    K G  N   +QN ++ +Y+KC A    E++F               
Sbjct: 7   GYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMI 66

Query: 122 ----------------DEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHI 163
                            +M  R+ V+WNT+IS   + G ++     F  M +   + + +
Sbjct: 67  YGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSM 126

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+ S+L AC    D + G+ LH+ I++V   L+  V + LVD+Y KCG ++ ++RVF+ +
Sbjct: 127 TYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTL 186

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              ++V W  ++S  A     +    +F  MR + +  D F  ++++  C    +  +G 
Sbjct: 187 REHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGE 246

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+HG  +K   +  V V  + + MYAK G+ + A   F+ M A +V+SW TM+  F  +G
Sbjct: 247 QLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSG 306

Query: 344 D-------------------------------GREAVKLLRDMLQGSFCPDEVTLASILS 372
           +                                 E +KL   ML+    PD +T  +++ 
Sbjct: 307 NVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIG 366

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C  L+IS    Q+ + A+K G+ + +S+ N+ I  YS+CG I  A   F S++E +L++
Sbjct: 367 ACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLIS 426

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W SI+G YA +G   + IE+F+ ML    +PD I ++ +LS CSH GLV E   +FN M 
Sbjct: 427 WNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMT 486

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
            D+ I    EH+ C+ DL GR GLL  A D++  MP +P +   GA + AC++H    +A
Sbjct: 487 KDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIHHDTEMA 546

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           + A + LLEL      +Y L++N Y+S      V+ +R++M++    K PGCSWIE+   
Sbjct: 547 ELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKDPGCSWIEVCNR 606

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
           +H F ++D SHPQ   +Y  L
Sbjct: 607 VHVFTANDTSHPQVKDIYKAL 627



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 201/413 (48%), Gaps = 35/413 (8%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   A     Q GK LH+ I+++     + + N ++ +Y KC   D  +++F+ +R
Sbjct: 128 YASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLR 187

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+VTW +LISGI + G     Y  F +M  D V +D+    ++L  C    +I +G +
Sbjct: 188 EHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQ 247

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKC-------------------------------GF 212
           LH F +K G   +  V +A + +Y KC                               G 
Sbjct: 248 LHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGN 307

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           VE AR  F+ +  R+++ WN M+  Y  N   +  + ++ LM  + ++ D+ TF +++ +
Sbjct: 308 VERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGA 367

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  L  SKLG QI    +K     DV V  S + +Y++ G I++A  +FD +  KN++SW
Sbjct: 368 CSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISW 427

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N+++ G+ QNG+G + +++ ++ML     PD +T  +ILS C    +  E +       K
Sbjct: 428 NSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTK 487

Query: 393 N-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           + G+   L     +++ + + G +  AL     +  +P+   W +++ A   H
Sbjct: 488 DFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIH 540



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 188/420 (44%), Gaps = 65/420 (15%)

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV----------- 219
           AC     I +  +LH    K GFG N  + ++++D+Y KC  +  A +V           
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 220 --------------------FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
                               F ++  RD V WN ++S ++ + L   ++  F  M ++G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           + +  T++S++++C  +   + G+ +H  +++    LDVLV   LVDMYAK G ID + R
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR 181

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC-GSLS 378
           VF+ +   NVV+W +++ G    G   E   +   M +     D   LA+IL  C G  +
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETN 241

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII- 437
           IS    Q+H + +K G+ + + + NA ++ Y+KCG    A   F ++   D+++WT++I 
Sbjct: 242 ISI-GEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMIT 300

Query: 438 ------------------------------GAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
                                         GAY  +   +E ++++  ML   VRPD I 
Sbjct: 301 SFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWIT 360

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           F+ ++ ACS   +   G +  +  +    +  D         L  R G + EA +L  S+
Sbjct: 361 FVTMIGACSELAISKLGTQILSQAVK-VGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSI 419


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 303/577 (52%), Gaps = 15/577 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  +       G+ +H H +  GL   L +   +L +YVKC    D   +F  M  R+
Sbjct: 16  ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75

Query: 129 IVTWNTLISGIINCG--GNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +V WN +++G  + G   +   +    +M +  +R +  T  +LL    Q   +  G  +
Sbjct: 76  LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135

Query: 185 HSFILKVGFGLN----------CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           H++ ++     N            + +AL+D+Y KCG +  ARRVFD +  R+ V W+ +
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 195

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +  + L      A  +F  M  +G+      + +S + +C +L   ++G Q+H L+ K  
Sbjct: 196 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 255

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
              D+    SL+ MYAK G ID A  +FD M  K+ VS++ +V G+ QNG   EA  + +
Sbjct: 256 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 315

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M   +  PD  T+ S++ +C  L+     R  H   I  G+ +  SI NALI+ Y+KCG
Sbjct: 316 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCG 375

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            I  + Q F  +   D+V+W ++I  Y  HGL KE+  +F +M +    PD + F+ +LS
Sbjct: 376 RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 435

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           ACSH GLV EG  +F++M   Y + P  EHY C+ DLL R G L EAY+ + SMP+    
Sbjct: 436 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 495

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
               A +GAC+V+ +I L K  +  + EL P    N+ L+SN+Y++   + + A +R + 
Sbjct: 496 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 555

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           +     K PGCSWIEI G +H FV  D+SHPQ+  +Y
Sbjct: 556 KVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIY 592



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 178/345 (51%), Gaps = 13/345 (3%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML   V  ++ TF   L+AC    D   GR +H   +  G   + FVS+AL+D+Y KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA--VFNLMRLEGMKGDYFTFSSLV 270
           + DA  +F  +  RDLV WN M++ YA + +   A+A  +   M++  ++ +  T  +L+
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 271 NSCGTLGSSKLGRQIHGLVI----------KQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
                 G+   G  +H   I          K      VL+ T+L+DMYAK G++  A RV
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSI 379
           FD M A+N V+W+ ++ GF       +A  L + ML    C     ++AS L +C SL  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                Q+HA   K+GV A L+  N+L++ Y+K G I  A+  F  +   D V++++++  
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           Y  +G ++E+  VF+KM +  V PD+   + ++ ACSH   +  G
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 166/334 (49%), Gaps = 22/334 (6%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+  A    L+ G+QLH+ + K G+   L+  N +L +Y K    D    LFDEM V
Sbjct: 229 ASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV 288

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+++ L+SG +  G     +  F++M   NV  D  T  SL+ AC     ++ GR  
Sbjct: 289 KDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS 348

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++  G      + +AL+D+Y KCG ++ +R+VF+ +  RD+V WN M++ Y ++ LG
Sbjct: 349 HGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLG 408

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-----HGLVIKQSFDLDVL 299
             A A+F  M   G   D  TF  L+++C   G    G+       HG  +    +  + 
Sbjct: 409 KEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI- 467

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG---FGQNGD-GREAVKLLRDM 355
               +VD+ ++ G +D+A      M  +  V     ++G     +N D G++  ++++++
Sbjct: 468 ---CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQEL 524

Query: 356 ---LQGSFCPDEVTLASILSSCGSLSISCETRQV 386
                G+F    V L++I S+ G    + E R +
Sbjct: 525 GPEGTGNF----VLLSNIYSAAGRFDEAAEVRII 554


>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
 gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
          Length = 673

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 186/572 (32%), Positives = 313/572 (54%), Gaps = 12/572 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y   ++  A    L+ G+ +H+HI++ G   +  L N ++ +Y KC +  D   +F+ +
Sbjct: 12  LYESLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDSLRDATAVFELV 71

Query: 125 -RVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
            R R    WN LI+     G +      +RRM  + V+ + IT  S+L AC   +D++ G
Sbjct: 72  ARERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTG 131

Query: 182 RRLH-SFIL-------KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           R +H S +L       +    ++  +++ALV +YG+CG V DAR VF+ +  RDL  WN 
Sbjct: 132 REIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNA 191

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           MV+ Y+ N     A+ V   M +EG++    TF  +++ C T+G+    R IH  ++   
Sbjct: 192 MVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATG 251

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
            +    V T+LV MY + G++  A   F  +  K++V+WN M+  + Q+G  R+++++  
Sbjct: 252 LESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYH 311

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M       D+VTL  +L +C SL+++ +TR VHA  +  GV+  + +  AL+NAY++ G
Sbjct: 312 VMDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAYARGG 371

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            +  A   F  ++E ++ TW++++ AYA  G    S+E++ +M    +RP+ I ++ +L 
Sbjct: 372 HLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYVSILF 431

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           AC+H GL+  GL YF  M  DY I    EH +C+ DLLGR G L EA  L+AS+P     
Sbjct: 432 ACNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPYRLGI 491

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
                 +GAC+ HG +      A +  ++E  +   Y  +SN+YA    W +V+R+R++M
Sbjct: 492 SAWMCLLGACRTHGDVERGARVARRAFQVESGEVAPYVALSNMYAGHGMWDEVSRVRQLM 551

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
            +  D K  G S++EI G +H F+  D +HP+
Sbjct: 552 ANTLD-KSTGKSFVEIDGRLHEFIQGDETHPE 582


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 194/610 (31%), Positives = 322/610 (52%), Gaps = 41/610 (6%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD----- 116
           +H F    + +  K   + Q KQ+HSH +K+GL +    Q +V+     C A +      
Sbjct: 3   SHCFGESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAF---CCAHESGKMIY 59

Query: 117 MEKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
             ++FD +    +  WNT+I G   IN   N    +  ML  N++ D  TF  LL+   +
Sbjct: 60  ARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTR 119

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              ++ G+ L +  +K GF  N FV  A + ++  C  V+ AR+VFD     ++V WN+M
Sbjct: 120 NMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIM 179

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +S Y        +  +F  M   G+  +  T   ++++C  L   + G+ I+  +     
Sbjct: 180 LSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIV 239

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG----------- 343
           + ++++   L+DM+A  G +D+A  VFD M  ++V+SW ++V GF   G           
Sbjct: 240 ERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQ 299

Query: 344 -------------DGR-------EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
                        DG        EA+ L R+M   +  PDE T+ SIL++C  L      
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG 359

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
             V  Y  KN ++    + NALI+ Y KCG++  A + F  +   D  TWT++I   A +
Sbjct: 360 EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAIN 419

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503
           G  +E++ +F  M+  ++ PD I ++ VL AC+H G+V +G  +F  M   + I P+  H
Sbjct: 420 GHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTH 479

Query: 504 YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563
           Y C+ DLLGR G L EA++++ +MP++P S   G+ +GAC+VH ++ LA+ AA+++LELE
Sbjct: 480 YGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELE 539

Query: 564 PSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSH 623
           P     Y L+ N+YA+ + W ++ ++RK+M +    K PGCS +E+ G ++ FV+ D+SH
Sbjct: 540 PENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSH 599

Query: 624 PQAVHMYAML 633
           PQ+  +YA L
Sbjct: 600 PQSKEIYAKL 609


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 307/563 (54%), Gaps = 3/563 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S ALK   +   +  G+ LH++  K  L + + + + +L +Y++    D   ++F EM  
Sbjct: 100 SVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPF 159

Query: 127 RNIVTWNTLISGIINCGGNVT--PYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           RN VTW   I+G+++ G +     YF +M     +  D   F   L+AC     ++ GR 
Sbjct: 160 RNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGRE 219

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++  GF    +V+++L  +Y +CG ++D  R+F+ +  RD+VLW  +++ Y     
Sbjct: 220 IHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQ 279

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+  F LMR   +  +  TF+S   +C +L     G Q+HG V        + V+ S
Sbjct: 280 EEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNS 339

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++ MY+    +D A  +F GM  ++++SW+T++ G+ Q   G E  K    M Q    P 
Sbjct: 340 MMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPT 399

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           +  LAS+LS  G +++  + RQVHA A+  G++   +I +ALIN YSKCGSI  A + F 
Sbjct: 400 DFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFE 459

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
                D+V+ T++I  YA HG  +E+I++FEK L  + RPD + F+ VL+ACSH G +  
Sbjct: 460 EKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDL 519

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +YFNLM  +Y++ P  EHY C+ DLL R G L +A  ++  MP +         + AC
Sbjct: 520 GFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRAC 579

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           K  G +   + AA+++LEL+P+       ++N+++S   W + A +RK M+     K PG
Sbjct: 580 KEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVIKEPG 639

Query: 604 CSWIEIAGEIHTFVSSDRSHPQA 626
            S I I  ++  F S   SHPQ+
Sbjct: 640 WSSILIKDQVSAFASGSLSHPQS 662



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 220/471 (46%), Gaps = 18/471 (3%)

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHI-------TFNSLLR 170
            ++FD+M  R+I +W  ++ G +       P    +L   +R+D +         +  L+
Sbjct: 48  RQVFDKMPRRDIKSWTAIMKGYV---AATKPEEALILFSAMRVDPLGVSGDTYVLSVALK 104

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           AC Q+ +I  G  LH++  K     + FV SAL+D+Y + G ++ + RVF E+  R+ V 
Sbjct: 105 ACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVT 164

Query: 231 WNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
           W   ++      L    +  F+ M R + +  D F F+  + +C  L   K GR+IH  V
Sbjct: 165 WTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHV 224

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           I + F   + VA SL  MY + G + D  R+F+ M+ ++VV W +++  + + G   +AV
Sbjct: 225 IVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAV 284

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
                M      P+E T AS  ++C SLS      Q+H      G+   LS+ N+++  Y
Sbjct: 285 NTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMY 344

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           S C  +  A   F  ++  D+++W++IIG Y+     +E  + F  M     +P   A  
Sbjct: 345 STCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALA 404

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            +LS      ++ +G +   L +    +  +    + L ++  + G ++EA  +      
Sbjct: 405 SLLSVSGIMAVLEQGRQVHALALY-LGLEQNPTIRSALINMYSKCGSIIEASKVFEE--- 460

Query: 530 EPRSD--TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           + R+D  +L A I     HG    A    EK L+L   +P +   +S + A
Sbjct: 461 KDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKL-SFRPDDVTFISVLTA 510



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 165/311 (53%), Gaps = 2/311 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ ALK  A    ++ G+++H+H++  G    L + N +  +Y +C    D  +LF+ M 
Sbjct: 201 FAIALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMS 260

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLDN--VRLDHITFNSLLRACVQADDIEVGRR 183
            R++V W +LI+  I  G         +L+ N  V  +  TF S   AC     +  G +
Sbjct: 261 ERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQ 320

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  +  +G G +  VS++++ +Y  C  ++ A  +F  + CRD++ W+ ++  Y+    
Sbjct: 321 LHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAF 380

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+     F+ MR  G +   F  +SL++  G +   + GRQ+H L +    + +  + ++
Sbjct: 381 GEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSA 440

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L++MY+K G+I +A +VF+     ++VS   M+ G+ ++G   EA+ L    L+ SF PD
Sbjct: 441 LINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPD 500

Query: 364 EVTLASILSSC 374
           +VT  S+L++C
Sbjct: 501 DVTFISVLTAC 511



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 15/299 (5%)

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE--G 258
           S L DL    G +  AR+VFD++  RD+  W  ++  Y      + A+ +F+ MR++  G
Sbjct: 33  SQLQDLI-DSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLG 91

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           + GD +  S  + +CG   +   G  +H    K      V V ++L+DMY + G ID +C
Sbjct: 92  VSGDTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSC 151

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSL 377
           RVF  M  +N V+W   + G    G   E ++    M +      D    A  L +C  L
Sbjct: 152 RVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADL 211

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 R++H + I  G  A L + N+L   Y++CG +   L+ F S+ E D+V WTS+I
Sbjct: 212 RQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLI 271

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGL 485
            AY   G  ++++  F  M +  V P+   F    +AC+           HG + S GL
Sbjct: 272 TAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGL 330



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 160/328 (48%), Gaps = 10/328 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++      A    L  G+QLH ++  LGL + LS+ N ++ +Y  C   D    LF  MR
Sbjct: 302 FASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMR 361

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+I++W+T+I G      G     YF  M     +       SLL        +E GR+
Sbjct: 362 CRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQ 421

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  L +G   N  + SAL+++Y KCG + +A +VF+E    D+V    M++ YA +  
Sbjct: 422 VHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGK 481

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA-- 301
            + AI +F        + D  TF S++ +C   G   LG Q   L +++++++       
Sbjct: 482 CEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNL-MQENYNMRPAKEHY 540

Query: 302 TSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD---GREAVKLLRDMLQ 357
             +VD+  + G ++DA ++ + M   K+ V W T++    + GD   GR A + + ++  
Sbjct: 541 GCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDP 600

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQ 385
            SF    VTLA+I SS G+   +   R+
Sbjct: 601 TSFTT-LVTLANIHSSTGNWKEAANVRK 627


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 327/598 (54%), Gaps = 10/598 (1%)

Query: 31  TTTITNAQKHDRSVLSSQLRNS---GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHS 87
           T  I    K  RS +S +L N    G ++   +      S  L   +   FL+ GKQ+H 
Sbjct: 224 TAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRY----VISSVLSACSMLEFLEGGKQIHG 279

Query: 88  HIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GN 145
           ++++ G    +S+ N ++  Y+KC       KLF+ +  +++V+W T+I+G +     G+
Sbjct: 280 YVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGD 339

Query: 146 VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD 205
               F  M+    + D     S+L +C     ++ GR++H++ +KV    + FV + L+D
Sbjct: 340 AMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLID 399

Query: 206 LYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265
           +Y KC  + +AR+VFD V   ++V +N M+  Y+       A+ +F  MRL        T
Sbjct: 400 MYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLT 459

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F SL+    +L   +L  QIH L+IK    LD    ++L+D+Y+K   + DA  VF+ + 
Sbjct: 460 FVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIY 519

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +++V WN M  G+ Q  +  E++KL +D+      P+E T A+++++  +++     +Q
Sbjct: 520 DRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQ 579

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
            H   IK G+     + N+L++ Y+KCGSI  + + F S  + D+  W S+I  YA HG 
Sbjct: 580 FHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGD 639

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
           + +++EVFE+M+   V+P+ + F+ +LSACSH GL+  G  +F  M S + I P  +HY 
Sbjct: 640 AAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-SKFGIEPGIDHYA 698

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
           C+  LLGR G + EA + +  MPI+P +    + + AC+V G + L  +AAE  +  +P+
Sbjct: 699 CMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPA 758

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSH 623
              +Y L+SN++AS+  W  V  +R+ M  +   K PG SWIE+  E+H F++ D +H
Sbjct: 759 DSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAH 816



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 221/391 (56%), Gaps = 4/391 (1%)

Query: 83  KQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           K++H+HI+ LG   + + L N +LH Y K     D +KLFD M  RN+VTW++++S    
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 142 CGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G +V     + R M   + + +     S++RAC Q  ++    +LH F++K GF  + +
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V ++L+D Y K G+V++AR +FD +  +  V W  +++ YA     + ++ +FN MR   
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD 250

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +  D +  SS++++C  L   + G+QIHG V+++ FD+DV V   ++D Y K   +    
Sbjct: 251 VYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGR 310

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++F+ +  K+VVSW TM+ G  QN    +A+ L  +M++  + PD     S+L+SCGSL 
Sbjct: 311 KLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQ 370

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              + RQVHAYAIK  +     ++N LI+ Y+KC S+  A + F  V   ++V++ ++I 
Sbjct: 371 ALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIE 430

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
            Y+      E++++F +M      P  + F+
Sbjct: 431 GYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 145/507 (28%), Positives = 257/507 (50%), Gaps = 8/507 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  ++   + G L Q  QLH  ++K G    + +   ++  Y K    D+   +FD ++V
Sbjct: 158 ASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKV 217

Query: 127 RNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +  VTW  +I+G    G +      F +M   +V  D    +S+L AC   + +E G+++
Sbjct: 218 KTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQI 277

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H ++L+ GF ++  V + ++D Y KC  V+  R++F+ ++ +D+V W  M++    N   
Sbjct: 278 HGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFH 337

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M  +G K D F  +S++NSCG+L + + GRQ+H   IK + D D  V   L
Sbjct: 338 GDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGL 397

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK  ++ +A +VFD + A NVVS+N M+ G+ +     EA+ L R+M      P  
Sbjct: 398 IDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTL 457

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +T  S+L    SL +   + Q+H   IK GV       +ALI+ YSKC  +  A   F  
Sbjct: 458 LTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEE 517

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + + D+V W ++   Y+    ++ES+++++ +    ++P+   F  V++A S+   +  G
Sbjct: 518 IYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHG 577

Query: 485 LRYFNLMISDYHILPDSEHYT-CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
            ++ N +I     L D    T  L D+  + G + E++   +S   +       + I   
Sbjct: 578 QQFHNQVIK--MGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTN-QRDIACWNSMISTY 634

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNY 570
             HG    A    E+++ +E  KP NY
Sbjct: 635 AQHGDAAKALEVFERMI-MEGVKP-NY 659


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 304/580 (52%), Gaps = 15/580 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  +       G+ +H H +  GL   L +   +L +YVKC    D   +F  M  R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 129 IVTWNTLISGIINCG--GNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +V WN +++G  + G   +   +    +M +  +R +  T  +LL    Q   +  G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 185 HSFILKVGFGLN----------CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           H++ ++     N            + +AL+D+Y KCG +  ARRVFD +  R+ V W+ +
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +  + L      A  +F  M  +G+      + +S + +C +L   ++G Q+H L+ K  
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 370

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
              D+    SL+ MYAK G ID A  +FD M  K+ VS++ +V G+ QNG   EA  + +
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M   +  PD  T+ S++ +C  L+     R  H   I  G+ +  SI NALI+ Y+KCG
Sbjct: 431 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCG 490

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            I  + Q F  +   D+V+W ++I  Y  HGL KE+  +F +M +    PD + F+ +LS
Sbjct: 491 RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 550

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           ACSH GLV EG  +F++M   Y + P  EHY C+ DLL R G L EAY+ + SMP+    
Sbjct: 551 ACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
               A +GAC+V+ +I L K  +  + EL P    N+ L+SN+Y++   + + A +R + 
Sbjct: 611 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 670

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +     K PGCSWIEI G +H FV  D+SHPQ+  +Y  L
Sbjct: 671 KVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 145/502 (28%), Positives = 239/502 (47%), Gaps = 44/502 (8%)

Query: 120 LFDEMRVRNIVTWNTLI----SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           LFD++   ++ T+N LI    S       +    +RRML   V  ++ TF   L+AC   
Sbjct: 79  LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D   GR +H   +  G   + FVS+AL+D+Y KC  + DA  +F  +  RDLV WN M+
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAML 198

Query: 236 SCYALNCLGDGAIA--VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI--- 290
           + YA + +   A+A  +   M++  ++ +  T  +L+      G+   G  +H   I   
Sbjct: 199 AGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRAC 258

Query: 291 -------KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
                  K      VL+ T+L+DMYAK G++  A RVFD M A+N V+W+ ++ GF    
Sbjct: 259 LHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCS 318

Query: 344 DGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
              +A  L + ML    C     ++AS L +C SL       Q+HA   K+GV A L+  
Sbjct: 319 RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 378

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           N+L++ Y+K G I  A+  F  +   D V++++++  Y  +G ++E+  VF+KM +  V 
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 463 PDSIAFLEVLSACSHGGLVSEG-LRYFNLMISDYHILPDSEHYTC--LTDLL---GRVGL 516
           PD+   + ++ ACSH   +  G   + +++I        SE   C  L D+    GR+ L
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL----ASETSICNALIDMYAKCGRIDL 494

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE----PSKPVNYAL 572
             + ++++ S  I   +  +  +       G  GL K A    LE+     P   V +  
Sbjct: 495 SRQVFNMMPSRDIVSWNTMIAGY-------GIHGLGKEATALFLEMNNLGFPPDGVTFIC 547

Query: 573 V------SNVYASERCWFDVAR 588
           +      S +    + WF V R
Sbjct: 548 LLSACSHSGLVIEGKHWFHVMR 569



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 171/344 (49%), Gaps = 24/344 (6%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+  A    L+ G+QLH+ + K G+   L+  N +L +Y K    D    LFDEM V
Sbjct: 344 ASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV 403

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+++ L+SG +  G     +  F++M   NV  D  T  SL+ AC     ++ GR  
Sbjct: 404 KDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS 463

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++  G      + +AL+D+Y KCG ++ +R+VF+ +  RD+V WN M++ Y ++ LG
Sbjct: 464 HGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLG 523

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVA-- 301
             A A+F  M   G   D  TF  L+++C   G    G+   H  V++  + L   +   
Sbjct: 524 KEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH--VMRHGYGLTPRMEHY 581

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG---FGQNGD-GREAVKLLRDM-- 355
             +VD+ ++ G +D+A      M  +  V     ++G     +N D G++  ++++++  
Sbjct: 582 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 641

Query: 356 -LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
              G+F    V L++I S+ G    + E R      I   VQ F
Sbjct: 642 EGTGNF----VLLSNIYSAAGRFDEAAEVR------IIQKVQGF 675



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 25/129 (19%)

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG--LSKESIEVFEKMLSHAVRPDSIAFLE 470
           G ++ A   F  +  PD+ T+  +I AY+      + + + ++ +ML H V P++  F  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 471 VLSACS-----------HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            L ACS           H   +  GL+  +L +S           T L D+  +   L +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQA-DLFVS-----------TALLDMYVKCACLPD 178

Query: 520 AYDLLASMP 528
           A  + A+MP
Sbjct: 179 AAHIFATMP 187


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 310/564 (54%), Gaps = 5/564 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           + + A+ G ++ G   H   +KLGLC +L + + +L +Y KC    +   LFD    +N+
Sbjct: 306 IPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNE-KNV 364

Query: 130 VTWNTLISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           ++WN++I G     +  G      +  + D V+++ +T  ++L  C +       + +H 
Sbjct: 365 ISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHG 424

Query: 187 FILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + L+ GF   +  V++A V  Y KCG +  A  VF  +  + +  WN ++  +  N    
Sbjct: 425 YALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPR 484

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ ++ LMR  G++ D FT +SL+++C  L S   G++IHG +++  F+LD  +  SLV
Sbjct: 485 KALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLV 544

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            +Y + G I  A   FD M  KN+V WNTM+ GF QN    +A+ +   ML     PDE+
Sbjct: 545 SLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEI 604

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           ++   L +C  +S     +++H +A+K+ +     +  +LI+ Y+KCG +  +   F  V
Sbjct: 605 SIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRV 664

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
                VTW  +I  Y  HG  +++IE+F+ M +   RPDS+ F+ +L+AC+H GLV+EGL
Sbjct: 665 HLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGL 724

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            Y   M S + I P  EHY C+ D+LGR G L EA +L+  +P +P S    + + +C+ 
Sbjct: 725 EYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRN 784

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           +  + + +  A KLLEL P K  NY L+SN YA    W +V ++R+ M++    K  GCS
Sbjct: 785 YRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCS 844

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHM 629
           WIEI G++  F+  D S  Q++ +
Sbjct: 845 WIEIGGKVSRFLVGDESLLQSMKI 868



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 256/508 (50%), Gaps = 39/508 (7%)

Query: 6   PAPPIFTVHF-----------KRPLSYLTPALYQNQTTTITNAQKHDRSVLSS--QLRNS 52
           P P  F+ H            K P    TP    +  + I ++ K  ++       L N+
Sbjct: 8   PPPLSFSFHHHHNLTLQNINNKIPFHSFTPPKSSHLFSPIISSHKKQQNASKHFHNLCNT 67

Query: 53  GTIHES-----------THSAHSFYSQA----LKVSAKFGFLQQGKQLHSHI-MKLGLCN 96
           G ++++             S++S   Q     L++  ++  ++ G+++H+ I       N
Sbjct: 68  GNLNQAFNFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQN 127

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG---GNVTPYFRRM 153
            + L  +++ +Y  C +  D   +F+  R +N+  WN L+SG +        V  +   +
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
            L     D+ T   +++ACV   D+ +G  +H F LK     + FV +AL+ +YGK GFV
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 214 EDARRVFDEVLCRDLVLWN-VMVSCYALNCLGDGAIAVFN--LMRLEGMKGDYFTFSSLV 270
           E A +VFD++  R+LV WN VM +C   N + + +  +F   L   EG+  D  T  +++
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLE-NGVFEESYGLFKGLLNGDEGLMPDVATMVTVI 306

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
             C   G  +LG   HGL +K     ++ V +SL+DMY+K G + +A  +FD    KNV+
Sbjct: 307 PLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVI 365

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           SWN+M+ G+ ++ D R A +LLR M ++     +EVTL ++L  C       + +++H Y
Sbjct: 366 SWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGY 425

Query: 390 AIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           A+++G +Q+   + NA +  Y+KCGS+  A   F  ++   + +W ++IG +  +G  ++
Sbjct: 426 ALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRK 485

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +++++  M    + PD      +LSAC+
Sbjct: 486 ALDLYLLMRGSGLEPDLFTIASLLSACA 513



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   ++   L+ GK+LH   +K  L     +   ++ +Y KC   +  + +FD + ++ 
Sbjct: 609 ALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKG 668

Query: 129 IVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC----VQADDIEVGR 182
            VTWN LI+  GI   G      F+ M     R D +TF +LL AC    + A+ +E   
Sbjct: 669 EVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLG 728

Query: 183 RLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVS 236
           ++ S      FG+   +   + +VD+ G+ G + +A  + +E+  + D  +W+ ++S
Sbjct: 729 QMQSL-----FGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLS 780


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 200/637 (31%), Positives = 325/637 (51%), Gaps = 43/637 (6%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S+ +     +K   +     Q KQLH+  ++    +  S  + V+ +Y   K   +   L
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLL 61

Query: 121 FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           F  ++   ++ W ++I    +          F  M       DH  F S+L++C    D+
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGK---------CGFVED-------------- 215
             G  +H FI+++G   + +  +AL+++Y K          G V D              
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 216 -------------ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
                         RRVF+ +  +D+V +N +++ YA + + + A+ +   M    +K D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
            FT SS++           G++IHG VI++  D DV + +SLVDMYAK+  I+D+ RVF 
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +  ++ +SWN++V G+ QNG   EA++L R M+     P  V  +S++ +C  L+    
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            +Q+H Y ++ G  + + I +AL++ YSKCG+I  A + F  +   D V+WT+II  +A 
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG   E++ +FE+M    V+P+ +AF+ VL+ACSH GLV E   YFN M   Y +  + E
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 481

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HY  + DLLGR G L EAY+ ++ M +EP        + +C VH ++ LA+  AEK+  +
Sbjct: 482 HYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTV 541

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           +      Y L+ N+YAS   W ++A+LR  MR     K P CSWIE+  + H FVS DRS
Sbjct: 542 DSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS 601

Query: 623 HPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKE 655
           HP    +   L  V   ME+     + SG  + +D+E
Sbjct: 602 HPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEE 638


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 321/583 (55%), Gaps = 22/583 (3%)

Query: 42  RSVLSSQLRNSGTIH-ESTHSAHSFYSQALKVSAKFG---------------FLQQGKQL 85
           R+V+S     SG +  + + SA  F+ +  KV  K                  +++  QL
Sbjct: 312 RNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQL 371

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRNIVTWNTLISGIINCG- 143
           HS I K G     ++ + ++++Y K    D  E++F EM   +N+  W  +IS     G 
Sbjct: 372 HSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGS 431

Query: 144 -GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
            G     F+RML + +R D    +S+L      D + +GR +H +ILK+G   +  V S+
Sbjct: 432 TGRAVELFQRMLQEGLRPDKFCSSSVLSII---DSLSLGRLIHCYILKIGLFTDISVGSS 488

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L  +Y KCG +E++  VF+++  +D V W  M++ ++ +   + A+ +F  M LE ++ D
Sbjct: 489 LFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPD 548

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T ++ + +C  L S + G+++HG  ++     +VLV  +LV+MY+K G I  A RVFD
Sbjct: 549 QMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFD 608

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +  K+  S +++V G+ QNG   +A+ L  ++       D  T++S++ +   L+    
Sbjct: 609 MLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDI 668

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             Q+HA   K G+ A +S+ ++L+  YSKCGSI    + F  +++PDL++WT++I +YA 
Sbjct: 669 GTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQ 728

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG   E+++V++ M     +PDS+ F+ VLSACSH G+V EG  + N M  +Y I P   
Sbjct: 729 HGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYY 788

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HY C+ DLLGR G L EA   + +MPIEP +   G  + ACKVHG I L + AA++++EL
Sbjct: 789 HYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIEL 848

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           EP +   Y  +SN+ A    W DV ++R +M      K PG S
Sbjct: 849 EPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 149/514 (28%), Positives = 249/514 (48%), Gaps = 33/514 (6%)

Query: 38  QKHDRSVLSSQLRN--SGTIHESTHSAHSFYSQALKVSAKFGF-----------LQQGKQ 84
           +K   ++L S  R+  S  + E++ + HS +   L     F F           L+  K 
Sbjct: 7   KKLQSNILPSACRSISSLAVTENSENFHSTHDTVLPPFDPFHFFSDYTKSGRCTLRNTKI 66

Query: 85  LHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           LH+H +K  +    + + N ++  Y K  +     +LFD+    N+++WN LISG   C 
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISG---CN 123

Query: 144 GNVT-----PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            N +       F +M       +  T+ S+L AC        G  ++S  LK GF  N +
Sbjct: 124 QNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGY 183

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V + ++DL+ K    EDA RVF +VLC ++V WN ++S    N     A+ +F  M    
Sbjct: 184 VRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRF 243

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
              + FTFSS++ +C  L   + GR + G VIK     DV V T+++D+YAK  ++D A 
Sbjct: 244 FMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAV 303

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           + F  M  +NVVSW T++ GF Q  D   A    ++M +     +  T+ S+L++C    
Sbjct: 304 KEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPV 363

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSII 437
           +  E  Q+H++  K G     ++ +ALIN YSK G +  + + F  ++   +L  W  +I
Sbjct: 364 MIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMI 423

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPD---SIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            A+A  G +  ++E+F++ML   +RPD   S + L ++ + S G L+       +  I  
Sbjct: 424 SAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLI-------HCYILK 476

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             +  D    + L  +  + G L E+Y +   MP
Sbjct: 477 IGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMP 510


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/608 (32%), Positives = 316/608 (51%), Gaps = 22/608 (3%)

Query: 54  TIHESTHSAHSFYSQ--------------ALKVSAKFGFL--QQGKQLHSHIMKLGLCNK 97
           +++ES HS+ S ++               A  +SA  GF   + G+ +H   +  G  ++
Sbjct: 94  SVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSE 153

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLL 155
           L L + ++ +Y K    +D  K+FD M  ++ + WNT+ISG       V     FR ++ 
Sbjct: 154 LLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLIN 213

Query: 156 DN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           ++  RLD  T   +L A  +  ++ +G ++HS   K G   + +V +  + LY KCG ++
Sbjct: 214 ESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIK 273

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
               +F E    D+V +N M+  Y  N   + ++++F  + L G +    T  SLV   G
Sbjct: 274 MGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSG 333

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
            L    L   IHG  +K +F     V+T+L  +Y+K   I+ A ++FD    K++ SWN 
Sbjct: 334 HL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNA 390

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G+ QNG   +A+ L R+M +  F P+ VT+  ILS+C  L      + VH       
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
            ++ + +  ALI  Y+KCGSIA A + F  + + + VTW ++I  Y  HG  +E++ +F 
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFY 510

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +ML+  + P  + FL VL ACSH GLV EG   FN MI  Y   P  +HY C+ D+LGR 
Sbjct: 511 EMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRA 570

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G L  A   + +M IEP S      +GAC++H    LA+  +EKL EL+P     + L+S
Sbjct: 571 GHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLS 630

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLC 634
           N+++++R +   A +R+  +     K PG + IEI    H F S D+SHPQ   +Y  L 
Sbjct: 631 NIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLE 690

Query: 635 TVFGLMEE 642
            + G M E
Sbjct: 691 KLEGKMRE 698



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 162/322 (50%), Gaps = 4/322 (1%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           I+ N+ L    ++  I    + H+ I+  GF  +  + + L       G +  AR +F  
Sbjct: 18  ISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           V   D+ L+NV++  +++N     +++VF +L +   +K +  T++  +++       + 
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           GR IHG  +    D ++L+ +++V MY K   ++DA +VFD M  K+ + WNTM+ G+ +
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 342 NGDGREAVKLLRDMLQGSFCP--DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           N    E++++ RD++  S C   D  TL  IL +   L       Q+H+ A K G  +  
Sbjct: 198 NEMYVESIQVFRDLINES-CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD 256

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +    I+ YSKCG I      F   ++PD+V + ++I  Y  +G ++ S+ +F++++  
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 460 AVRPDSIAFLEVLSACSHGGLV 481
             R  S   + ++    H  L+
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLI 338


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/641 (31%), Positives = 327/641 (51%), Gaps = 85/641 (13%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLF 121
           F++ +  +S+    L Q +Q H+ I++L L +   L   +L  Y    +    +    L 
Sbjct: 2   FHALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLS 61

Query: 122 DEMRVRNIVTWNTLISGIINCGGNVTPYFRRML-----LDNVRL--DHITFNSLLRACVQ 174
             +    + ++++LI          + +F  +L     L  +RL  D     S +++C  
Sbjct: 62  SHLPHPTLFSFSSLIHAFAR-----SHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCAS 116

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              ++ G++LH+F    GF  +  V+S+L  +Y KC  + DAR++FD +  RD+V+W+ M
Sbjct: 117 LRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAM 176

Query: 235 VSCYAL-----------------------------------NCLGDGAIAVFNLMRLEGM 259
           ++ Y+                                    N   D A+ +F +M ++G 
Sbjct: 177 IAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGF 236

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T S ++ + G L    +G Q+HG VIKQ    D  V ++++DMY K G + +  R
Sbjct: 237 WPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSR 296

Query: 320 VFD--------------------GMTAK---------------NVVSWNTMVVGFGQNGD 344
           VFD                    GM                  NVV+W +++    QNG 
Sbjct: 297 VFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGK 356

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA++L RDM      P+ VT+ S++ +CG++S     +++H ++++ G+   + + +A
Sbjct: 357 DLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSA 416

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ Y+KCG I  A +CF  +   +LV+W +++  YA HG +KE++E+F  ML    +PD
Sbjct: 417 LIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPD 476

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + F  VLSAC+  GL  EG R +N M  ++ I P  EHY CL  LL RVG L EAY ++
Sbjct: 477 LVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSII 536

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP EP +   GA + +C+VH ++ L + AAEKL  LEP+ P NY L+SN+YAS+  W 
Sbjct: 537 KEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWD 596

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           +  R+R++M+     K PG SWIE+  ++H  ++ D+SHPQ
Sbjct: 597 EENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQ 637


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 302/571 (52%), Gaps = 8/571 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +    L+  + +H H  + GL   L +   ++ VY KC +F     +F  M  R++
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLL--DNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN +++G     G  +     +LL  D+   +  T  +LL    Q   +  GR +H++
Sbjct: 196 VAWNAMLAGYA-LHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 188 ILKV----GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            ++            V +AL+D+Y KCG +  A RVF+ +  R+ V W+ +V  + L   
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 244 GDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
              A ++F  M  +G+      + +S + +C  L    LG+Q+H L+ K     D+    
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGN 374

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+ MYAK G ID A  +FD M  K+ VS++ +V G+ QNG   EA ++ R M   +  P
Sbjct: 375 SLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQP 434

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D  T+ S++ +C  L+     +  H   I  G+ +  SI NALI+ Y+KCG I  + Q F
Sbjct: 435 DVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIF 494

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   D+V+W ++I  Y  HGL KE+  +F  M   A  PD + F+ ++SACSH GLV+
Sbjct: 495 DVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVT 554

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG R+F++M   Y I P  EHY  + DLL R G L EAY  +  MP++      GA +GA
Sbjct: 555 EGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGA 614

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+VH +I L K  +  + +L P    N+ L+SN++++   + + A +R + ++    K P
Sbjct: 615 CRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSP 674

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           GCSWIEI G +H F+  DRSH Q+  +Y  L
Sbjct: 675 GCSWIEINGSLHAFIGGDRSHAQSSEIYQEL 705



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 192/389 (49%), Gaps = 8/389 (2%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRL 160
           Q+ H  + C        LFD++    I  +N LI    +      +  Y         + 
Sbjct: 68  QIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQP 127

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           ++ TF  +L+AC    D+   R +H    + G   + FVS+ALVD+Y KC     A  VF
Sbjct: 128 NNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVF 187

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +  RD+V WN M++ YAL+      IA   LM+ +    +  T  +L+      G+  
Sbjct: 188 RRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALS 246

Query: 281 LGRQIHGLVIKQSFDLD----VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            GR +H   ++     D    VLV T+L+DMYAK G++  A RVF+ M  +N V+W+ +V
Sbjct: 247 QGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALV 306

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
            GF   G   EA  L +DML    C     ++AS L +C +LS  C  +Q+HA   K+G+
Sbjct: 307 GGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGL 366

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              L+  N+L++ Y+K G I  A   F  +   D V++++++  Y  +G + E+  VF K
Sbjct: 367 HTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRK 426

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           M +  V+PD    + ++ ACSH   +  G
Sbjct: 427 MQACNVQPDVATMVSLIPACSHLAALQHG 455



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 163/326 (50%), Gaps = 6/326 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+  A    L  GKQLH+ + K GL   L+  N +L +Y K    D    LFD+M V
Sbjct: 339 ASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVV 398

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+++ L+SG +  G     +  FR+M   NV+ D  T  SL+ AC     ++ G+  
Sbjct: 399 KDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCG 458

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++  G      + +AL+D+Y KCG ++ +R++FD +  RD+V WN M++ Y ++ LG
Sbjct: 459 HGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLG 518

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             A A+F  M+ +  + D  TF  L+++C   G    G R  H +  K      +     
Sbjct: 519 KEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIG 578

Query: 304 LVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVG--FGQNGDGREAVKLLRDMLQGSF 360
           +VD+ A+ G +D+A +   GM  K +V  W  ++      +N D  + V  +   L    
Sbjct: 579 MVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEG 638

Query: 361 CPDEVTLASILSSCGSLSISCETRQV 386
             + V L++I S+ G    + E R +
Sbjct: 639 TGNFVLLSNIFSAAGRFDEAAEVRII 664


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/562 (34%), Positives = 298/562 (53%), Gaps = 4/562 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           + LH+  +  G      + + +  +Y      +D  K+FD +   + V WNTL++G+   
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL--S 200

Query: 143 GGNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
           G      F RM    +VR D  T  S+L A  +  +  +GR +H+F  K G   +  V +
Sbjct: 201 GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVT 260

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
            L+ LY KCG +E AR +FD +   DLV +N ++S Y++N +   ++ +F  +   G++ 
Sbjct: 261 GLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRP 320

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
              T  +L+      G   L   +H  V+K   D +  V+T+L  +Y +  ++D A R F
Sbjct: 321 SSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D M  K + SWN M+ G+ QNG    AV L + M   +  P+ +T++S LS+C  L    
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             + VH       ++  + +  ALI+ Y KCGSIA A   F S+   ++V+W  +I  Y 
Sbjct: 441 LGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYG 500

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HG   E++++++ M+   + P S  FL VL ACSHGGLV EG   F  M SDY I P  
Sbjct: 501 LHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGI 560

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL-GAFIGACKVHGSIGLAKWAAEKLL 560
           EH TC+ DLLGR G L EA++L++  P       + GA +GAC VH    LAK A++KL 
Sbjct: 561 EHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLF 620

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           ELEP     Y L+SN+Y S++ + + A +R+  +     K PGC+ IEI    H F++ D
Sbjct: 621 ELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGD 680

Query: 621 RSHPQAVHMYAMLCTVFGLMEE 642
           R+HPQ+  +Y  L  +   M E
Sbjct: 681 RAHPQSDAIYLYLEKLTAKMIE 702



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 193/393 (49%), Gaps = 27/393 (6%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L  +A+      G+ +H+   K GL     +   ++ +Y KC   +    LFD M  
Sbjct: 225 ASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEG 284

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++VT+N LISG    G  G+    F+ ++   +R    T  +L+          +   L
Sbjct: 285 PDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCL 344

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++K G   N  VS+AL  LY +   ++ ARR FD +  + +  WN M+S YA N L 
Sbjct: 345 HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLT 404

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+A+F  M+   ++ +  T SS +++C  LG+  LG+ +H ++  +  +L+V V T+L
Sbjct: 405 EMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTAL 464

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY K G+I +A  +FD M  KNVVSWN M+ G+G +G G EA+KL +DM+     P  
Sbjct: 465 IDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTS 524

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCF 422
            T  S+L +C            H   +K G   F S+ +   +      C  +   L   
Sbjct: 525 STFLSVLYACS-----------HGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRA 573

Query: 423 GSVKEP-DLVT-----------WTSIIGAYAFH 443
           G +KE  +L++           W +++GA   H
Sbjct: 574 GQLKEAFELISEFPKSAVGPGIWGALLGACMVH 606



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL   A+ G L  GK +H  I    L   + +   ++ +YVKC +  +   +FD M  
Sbjct: 427 SSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDN 486

Query: 127 RNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N+V+WN +IS  G+   G      ++ M+  ++     TF S+L AC     ++ G  +
Sbjct: 487 KNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTV 546

Query: 185 -HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV---LWNVMVSCYAL 240
             S     G        + +VDL G+ G +++A  +  E   +  V   +W  ++    +
Sbjct: 547 FRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISE-FPKSAVGPGIWGALLGACMV 605

Query: 241 NCLGDGA-IAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQ 284
           +  GD A +A   L  LE    G Y   S+L  S      + + RQ
Sbjct: 606 HKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQ 651



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 119/306 (38%), Gaps = 59/306 (19%)

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLA----SILSSCGSLSISCET------RQVHA 388
           F +N   R    L  D+L  S  PD  + A    S+ SSC    IS  +      R +HA
Sbjct: 90  FLRNSLLRSLPTLRADLLFPS--PDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHA 147

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS-K 447
            A+ +G  A   + +AL   Y        A + F +V  PD V W +++      GLS  
Sbjct: 148 LAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLA-----GLSGS 202

Query: 448 ESIEVFEKML-SHAVRPDSIAFLEVLSA-----------CSHG-----GL-----VSEGL 485
           E++E F +M  + +VRPDS     VL A           C H      GL     V  GL
Sbjct: 203 EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGL 262

Query: 486 RYFNLMISDY----HIL-----PDSEHYTCLT---DLLGRVGLLVEAYDLLASMPIEPRS 533
                   D     H+      PD   Y  L     + G VG  VE +  L  M + P S
Sbjct: 263 ISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSS 322

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVS-----NVYASERCWFDV 586
            TL A I      G   LA      +++  L+ + PV+ AL +     N   S R  FD 
Sbjct: 323 STLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDA 382

Query: 587 ARLRKM 592
              + M
Sbjct: 383 MPEKTM 388


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 178/570 (31%), Positives = 318/570 (55%), Gaps = 3/570 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKL-GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           Y+  L   A    L++GK +HS I    GL   + L+N +L +Y KC + +D ++LF+ M
Sbjct: 124 YTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM 183

Query: 125 RVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
             R++ +WN +I+     G +     R     +V     TF S+L AC     ++ GR++
Sbjct: 184 SGRSVSSWNAMIAAYAQSG-HFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKI 242

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ I   G  L+  + +AL+ +Y +C  ++DA ++F  +  RD+V W+ M++ +A   L 
Sbjct: 243 HALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLF 302

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           D AI  ++ M+LEG++ +Y+TF+S++ +C ++G  + GR +H  ++   + + ++  T+L
Sbjct: 303 DEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTAL 362

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP-D 363
           VD+Y   G++D+A  +FD +  ++   W  ++ G+ + G     ++L R+M   +  P  
Sbjct: 363 VDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPAT 422

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           ++  + ++S+C SL    + RQ H+    +G+ +   +  +L+N YS+ G++  A Q F 
Sbjct: 423 KIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFD 482

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D + WT++I  YA HG    ++ ++++M      P  + F+ VL ACSH GL  +
Sbjct: 483 KMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQ 542

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G + F  + SDY + P+  HY+C+ DLL R G L +A +L+ +MP+EP   T  + +GA 
Sbjct: 543 GKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGAS 602

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H  +  A  AA ++ +L+P  P +Y L+SNV+A       +A +R  M      K  G
Sbjct: 603 RIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRG 662

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            SWIE+A +IH F   D SHP+   ++A L
Sbjct: 663 SSWIEVADQIHEFNVGDNSHPRFQEIFAEL 692



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 249/506 (49%), Gaps = 18/506 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+  +Q+H  I      N + L N+++  Y KC +       FD +  +N  +W ++++ 
Sbjct: 40  LESVRQIHDRISGAASAN-VFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTA 98

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV-GFGL 195
               G        ++RM   +++ + + + ++L AC     +E G+ +HS I    G  L
Sbjct: 99  YAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKL 155

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  + ++L+ +Y KCG +EDA+R+F+ +  R +  WN M++ YA +   + AI ++  M 
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD 215

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           +E       TF+S++++C  LG    GR+IH L+  +  +LD+ +  +L+ MYA+   +D
Sbjct: 216 VE---PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLD 272

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           DA ++F  +  ++VVSW+ M+  F +     EA++    M      P+  T AS+L +C 
Sbjct: 273 DAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 332

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           S+      R VH   + NG +  L    AL++ Y+  GS+  A   F  ++  D   WT 
Sbjct: 333 SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTV 392

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           +IG Y+  G     +E++ +M +    P + I +  V+SAC+  G  ++  +  + + +D
Sbjct: 393 LIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD 452

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHGSIGLA 552
             ++ D    T L ++  R G L  A  +   M      DTL     I     HG  GLA
Sbjct: 453 -GMISDFVLATSLVNMYSRWGNLESARQVFDKM---SSRDTLAWTTLIAGYAKHGEHGLA 508

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYA 578
                K +ELE ++P     +  +YA
Sbjct: 509 -LGLYKEMELEGAEPSELTFMVVLYA 533



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 196/374 (52%), Gaps = 16/374 (4%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +   LR C    D+E  R++H  I       N F+ + +V  YGKCG V  AR  FD + 
Sbjct: 30  YRDALRQC---QDLESVRQIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARAAFDAIA 85

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            ++   W  M++ YA N     A+ ++  M L+    +   +++++ +C ++ + + G+ 
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIKALEEGKA 142

Query: 285 IHGLVI-KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           IH  +   +   LDV++  SL+ MYAK G+++DA R+F+ M+ ++V SWN M+  + Q+G
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSG 202

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA++L  DM      P   T  S+LS+C +L +  + R++HA     G +  LS++N
Sbjct: 203 HFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 259

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           AL+  Y++C  +  A + F  +   D+V+W+++I A+A   L  E+IE + KM    VRP
Sbjct: 260 ALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP 319

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISD-YHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           +   F  VL AC+  G +  G    + ++ + Y I     + T L DL    G L EA  
Sbjct: 320 NYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL--VNGTALVDLYTSYGSLDEARS 377

Query: 523 LLASMPIEPRSDTL 536
           L     IE R + L
Sbjct: 378 LFDQ--IENRDEGL 389


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 303/577 (52%), Gaps = 15/577 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  +       G+ +H H +  GL   L +   +L +YVKC    D   +F  M  R+
Sbjct: 16  ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75

Query: 129 IVTWNTLISGIINCG--GNVTPYF--RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +V WN +++G  + G   +   +    +M +  +R +  T  +LL    Q   +  G  +
Sbjct: 76  LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135

Query: 185 HSFILKVGFGLN----------CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
           H++ ++     N            + +AL+D+Y KCG +  ARRVFD +  R+ V W+ +
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 195

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +  + L      A  +F  M  +G+      + +S + +C +L   ++G Q+H L+ K  
Sbjct: 196 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 255

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
              D+    SL+ MYAK G ID A  +FD M  K+ VS++ +V G+ QNG   EA  + +
Sbjct: 256 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 315

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M   +  PD  T+ S++ +C  L+     R  H   I  G+ +  SI NALI+ Y+KCG
Sbjct: 316 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCG 375

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            I  + Q F  +   D+V+W ++I  Y  HGL KE+  +F +M +    PD + F+ +LS
Sbjct: 376 RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 435

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
           ACSH GLV EG  +F++M   Y + P  EHY C+ DLL R G L EAY+ + SMP+    
Sbjct: 436 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 495

Query: 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
               A +GAC+V+ +I L K  +  + EL P    N+ L+SN+Y++   + + A +R + 
Sbjct: 496 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 555

Query: 594 RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           +     K PGCSWIEI G +H FV  D+SHPQ+  +Y
Sbjct: 556 KVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIY 592



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 209/426 (49%), Gaps = 24/426 (5%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML   V  ++ TF   L+AC    D   GR +H   +  G   + FVS+AL+D+Y KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA--VFNLMRLEGMKGDYFTFSSLV 270
           + DA  +F  +  RDLV WN M++ YA + +   A+A  +   M++  ++ +  T  +L+
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 271 NSCGTLGSSKLGRQIHGLVI----------KQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
                 G+   G  +H   I          K      VL+ T+L+DMYAK G++  A RV
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSI 379
           FD M A+N V+W+ ++ GF       +A  L + ML    C     ++AS L +C SL  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                Q+HA   K+GV A L+  N+L++ Y+K G I  A+  F  +   D V++++++  
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y  +G ++E+  VF+KM +  V PD+   + ++ ACSH   +  G R  +  +    +  
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLAS 359

Query: 500 DSEHYTCLTDLL---GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           ++     L D+    GR+ L  + ++++ S  I   +  +  +       G  GL K A 
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY-------GIHGLGKEAT 412

Query: 557 EKLLEL 562
              LE+
Sbjct: 413 ALFLEM 418



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 166/334 (49%), Gaps = 22/334 (6%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+  A    L+ G+QLH+ + K G+   L+  N +L +Y K    D    LFDEM V
Sbjct: 229 ASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAV 288

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+++ L+SG +  G     +  F++M   NV  D  T  SL+ AC     ++ GR  
Sbjct: 289 KDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS 348

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++  G      + +AL+D+Y KCG ++ +R+VF+ +  RD+V WN M++ Y ++ LG
Sbjct: 349 HGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLG 408

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-----HGLVIKQSFDLDVL 299
             A A+F  M   G   D  TF  L+++C   G    G+       HG  +    +  + 
Sbjct: 409 KEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI- 467

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG---FGQNGD-GREAVKLLRDM 355
               +VD+ ++ G +D+A      M  +  V     ++G     +N D G++  ++++++
Sbjct: 468 ---CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQEL 524

Query: 356 ---LQGSFCPDEVTLASILSSCGSLSISCETRQV 386
                G+F    V L++I S+ G    + E R +
Sbjct: 525 GPEGTGNF----VLLSNIYSAAGRFDEAAEVRII 554


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/566 (31%), Positives = 308/566 (54%), Gaps = 38/566 (6%)

Query: 103 QVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR 159
           Q++   V    FD +     +F+ ++  N++ WNT+  G      +VT     + + ++ 
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 160 L--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA- 216
           L  +  +F  LL++C ++  +  G+++H  +LK+G+ L+ +V+++L+ +Y + G +EDA 
Sbjct: 61  LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAH 120

Query: 217 ------------------------------RRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
                                         R++FDE+  +D+V WN M+S Y   C    
Sbjct: 121 KVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE 180

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ ++  M    +K D  T  ++V++C   GS +LGRQ+H  +    F  ++ +   L+D
Sbjct: 181 ALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLID 240

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y+K G ++ AC +F G+  K+V+SWNT++ G       +EA+ L ++ML+    P++VT
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300

Query: 367 LASILSSCGSLSISCETRQVHAYAIK--NGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           + S+L +C  L      R +H Y  K   GV    S+  +LI+ Y+KCG I  A Q F S
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDS 360

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +    L +W ++I  +A HG +  + ++F KM  + + PD I F+ +LSACSH G++  G
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
              F  M  DY I P  EHY C+ DLLG  GL  EA +++ +MP+EP      + + ACK
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +H ++ L +  A+ L+++EP  P +Y L+SN+YA+   W  VA++R ++ D    K PGC
Sbjct: 481 MHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGC 540

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMY 630
           S IEI   +H F+  D+ HP+   +Y
Sbjct: 541 SSIEIDSVVHEFIIGDKFHPRNREIY 566



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 203/415 (48%), Gaps = 45/415 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK   L +G+Q+H H++KLG    + +   ++ +Y +        K FD       
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGII-NCG-GNVTPYFRRMLLD 156
                            +  KLFDE+ V+++V+WN +ISG +  C        ++ M+  
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NV+ D  T  +++ AC Q+  IE+GR+LHS+I   GFG N  + + L+DLY KCG VE A
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F  +  +D++ WN ++  +    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 311

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+   +    +  TSL+DMYAK G+I+ A +VFD M  +++ SWN 
Sbjct: 312 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV-----HAY 389
           M+ GF  +G    A  L   M +    PD++T   +LS+C    +    R +       Y
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDY 431

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
            I   ++ +      +I+    CG    A +   ++  EPD V W S++ A   H
Sbjct: 432 KITPKLEHY----GCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH 482


>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71420-like [Glycine max]
          Length = 782

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 224/650 (34%), Positives = 347/650 (53%), Gaps = 47/650 (7%)

Query: 33  TITNAQKHDRSV--------LSSQLR---NSGTIHES-----THSAHSF--YSQALKVSA 74
           TI+ A+K + S         + +Q+R     G I E+     THS+ S   Y+      A
Sbjct: 42  TISRARKVNSSAEPETIATNIDAQIRALSTQGNIEEALSLLYTHSSLSLQTYASLFHACA 101

Query: 75  KFGFLQQGKQLHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW 132
           +   LQ G  LH +++     + N + L N ++++Y KC        +FD+M  RNIV+W
Sbjct: 102 QKKCLQHGMTLHHYVLHKDPTIQNDVFLTNHIINMYCKCGHLAYARYVFDQMSHRNIVSW 161

Query: 133 NTLISGIINCGGNVTPYFRRM--LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
             LISG     G V   F     LL + R +   F SLL AC +  DI+ G ++H+  LK
Sbjct: 162 TALISGHAQ-SGLVRECFSLFSGLLAHFRPNEFAFASLLSAC-EEHDIKCGMQVHAVALK 219

Query: 191 VGFGLNCFVSSALVDLYGK-CGF-------VEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +    N +V+++L+ +Y K  GF        +DA  +F  +  R+LV WN M++ + L  
Sbjct: 220 ISLDANVYVANSLITMYSKRSGFGGGYAQTPDDAWTMFKSMEFRNLVSWNSMIAXFQLRG 279

Query: 243 LGDGAIAVFNLMRLEGMKGDYFT----FSSLVNSCGTLG--SSKLGR--QIHGLVIKQSF 294
           LGD AI +F  M   G+  D  T    FSSL N CG     ++ L +  Q+H L IK   
Sbjct: 280 LGDKAICLFAHMYCNGIGFDRATLLSVFSSL-NECGAFDVINTYLRKCFQLHCLTIKSGL 338

Query: 295 DLDVLVATSLVDMYAK-NGNIDDACRVF-DGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             ++ V T+L+  YA   G+I D  R+F D  +  ++VSW  ++  F +  D  +A  L 
Sbjct: 339 ISEIEVVTALIKSYANLGGHISDCYRIFHDTSSQLDIVSWTALISVFAER-DPEQAFLLF 397

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             + + S+ PD  T +  L +C           +H+  IK G Q    + NAL++AY++C
Sbjct: 398 CQLHRQSYLPDWYTFSIALKACAYFVTEQHAMAIHSQVIKKGFQEDTVLCNALMHAYARC 457

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GS+A + Q F  +   DLV+W S++ +YA HG +K+++E+F++M    V PDS  F+ +L
Sbjct: 458 GSLALSEQVFNEMGCHDLVSWNSMLKSYAIHGQAKDALELFQQM---NVCPDSATFVALL 514

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SACSH GLV EG++ FN M  D+ ++P  +HY+C+ DL GR G + EA +L+  MP++P 
Sbjct: 515 SACSHVGLVDEGVKLFNSMSDDHGVVPQLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPD 574

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           S    + +G+C+ HG   LAK AA+K  ELEP+  + Y  +SN+Y+S   +     +R  
Sbjct: 575 SVIWSSLLGSCRKHGETRLAKLAADKFKELEPNNSLGYVQMSNIYSSGGSFTKAGLIRNE 634

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           M D    K PG SW+EI  ++H F S  + HP    + + L  V G ++E
Sbjct: 635 MSDFKVRKEPGLSWVEIGKQVHEFGSGGQYHPNRGAILSRLEIVIGQLKE 684


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 312/566 (55%), Gaps = 9/566 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           LK  A+ G L +G+  HS  ++LG+    +   N +L  Y +    DD E++FD M  R+
Sbjct: 115 LKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPARD 174

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +VTWN+++ G ++ G        FR M     V+ D +   + L AC     +  GR +H
Sbjct: 175 VVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQGREVH 234

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +++++ G   +  V ++++D+Y KCG +  A  VF  +  R +V WN M+  YALN   +
Sbjct: 235 AYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPE 294

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A   F  M+ EG + +  T  +L+ +C    SS  GR +HG + ++ F   V++ T+L+
Sbjct: 295 EAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALL 354

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +MY+K G +  + +VF  MT K +VSWN M+  +       EA+ L  D+L     PD  
Sbjct: 355 EMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYF 414

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+++++ +   L +  + RQ+H+Y I+ G      I NA+++ Y++CG +  + + F  +
Sbjct: 415 TMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKM 474

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              D+++W ++I  YA HG  + ++E+F +M  + +RP+   F+ VL+ACS  GL  EG 
Sbjct: 475 AAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGW 534

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
             FN M  DY ++P  EHY C+TDLLGR G L E    + +MPI+P     G+ + A + 
Sbjct: 535 TQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLTASRN 594

Query: 546 HGSIGLAKWAAEKLLELEPSKPVN-----YALVSNVYASERCWFDVARLRKMMRDNCDHK 600
              I +A++AAE++ +LE  +  +     Y L+S++YA    W DV R++ +M +    +
Sbjct: 595 RNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAGRWKDVERIKSLMEEKGLRR 654

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQA 626
               S +E+ G   +FV+ D +HPQ+
Sbjct: 655 TDPRSIVELHGISCSFVNGDTTHPQS 680



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 165/328 (50%), Gaps = 4/328 (1%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDAR 217
           R D  TF  +L+ C +   ++ GR  HS  +++G    + +  ++L+  Y + G V+DA 
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAE 164

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR--LEGMKGDYFTFSSLVNSCGT 275
           RVFD +  RD+V WN MV  Y  N LG  A+  F  M   LE ++ D     + + +C  
Sbjct: 165 RVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALE-VQHDGVGIIAALAACCL 223

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
             +   GR++H  VI+   + DV V TS++DMY K G+I  A  VF  M ++ VV+WN M
Sbjct: 224 ESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCM 283

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+  N    EA      M       + VT  ++L++C     S   R VH Y  +   
Sbjct: 284 IGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQF 343

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              + +E AL+  YSK G +  + + FG +    LV+W ++I AY +  +  E+I +F  
Sbjct: 344 LPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLD 403

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           +L+  + PD      V+ A    GL+ +
Sbjct: 404 LLNQPLYPDYFTMSAVVPAFVLLGLLRQ 431



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 3/330 (0%)

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           + +LV  +   G ++DA+        RD  L NV++   A   L   A+A +  M   G 
Sbjct: 45  TKSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGA 104

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNIDDAC 318
           + D FTF  ++  C  LG+   GR  H   I+      DV    SL+  YA+ G +DDA 
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAE 164

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASILSSCGSL 377
           RVFDGM A++VV+WN+MV G+  NG G  A+   R+M +      D V + + L++C   
Sbjct: 165 RVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLE 224

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S   + R+VHAY I++G++  + +  ++++ Y KCG IA A   F ++    +VTW  +I
Sbjct: 225 SALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMI 284

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
           G YA +   +E+ + F +M +   + + +  + +L+AC+       G R  +  I+    
Sbjct: 285 GGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYG-RSVHGYITRRQF 343

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           LP     T L ++  +VG +  +  +   M
Sbjct: 344 LPHVVLETALLEMYSKVGKVKSSEKVFGQM 373


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/599 (31%), Positives = 321/599 (53%), Gaps = 13/599 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y    K+    G L  GK  H+ + ++   NK  + N +L +Y  CK+F   E+ FD++ 
Sbjct: 83  YEYLFKMCGTLGALSDGKLFHNRLQRMANSNKF-IDNCILQMYCDCKSFTAAERFFDKIV 141

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +W T+IS     G        F RML   +  +   F++L+ +      +++G++
Sbjct: 142 DRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQ 201

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS ++++ F  +  + + + ++Y KCG+++ A    +++  +  V    ++  Y     
Sbjct: 202 IHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAAR 261

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F+ M  EG++ D F FS ++ +C  LG    G+QIH   IK   + +V V T 
Sbjct: 262 NRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTP 321

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVD Y K    + A + F+ +   N  SW+ ++ G+ Q+G    A+++ + +       +
Sbjct: 322 LVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLN 381

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
                +I  +C ++S      Q+HA AIK G+ A+LS E+A+I  YSKCG +  A Q F 
Sbjct: 382 SFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFL 441

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           ++ +PD V WT+II A+A+HG + E++ +F++M    VRP+ + F+ +L+ACSH GLV E
Sbjct: 442 AIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSGLVKE 501

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G ++ + M   Y + P  +HY C+ D+  R GLL+EA +++ SMP EP   +  + +G C
Sbjct: 502 GKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLGGC 561

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
               ++ +   AA+ +  L+P     Y ++ N+YA    W + A+ RKMM +    K   
Sbjct: 562 WSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVS 621

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVS---GHCNVLDKEMDEC 659
           CSWI + G++H FV  DR HPQ   +Y+ L       +E NVS   G   +L++E   C
Sbjct: 622 CSWIIVKGKVHRFVVGDRHHPQTEQIYSKL-------KELNVSFKKGEERLLNEENALC 673



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 192/380 (50%), Gaps = 4/380 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +S  +   A    L  GKQ+HS ++++     +S++  + ++YVKC   D  E   ++
Sbjct: 181 SIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNK 240

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  ++ V    L+ G      N      F +M+ + V LD   F+ +L+AC    D+  G
Sbjct: 241 MTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTG 300

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           +++HS+ +K+G      V + LVD Y KC   E AR+ F+ +   +   W+ +++ Y  +
Sbjct: 301 KQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQS 360

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              D A+ VF  +R +G+  + F ++++  +C  +     G QIH   IK+     +   
Sbjct: 361 GKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGE 420

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           ++++ MY+K G +D A + F  +   + V+W  ++     +G   EA++L ++M      
Sbjct: 421 SAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVR 480

Query: 362 PDEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
           P+ VT   +L++C    +  E +Q + +   K GV   +   N +I+ YS+ G +  AL+
Sbjct: 481 PNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALE 540

Query: 421 CFGSVK-EPDLVTWTSIIGA 439
              S+  EPD+++W S++G 
Sbjct: 541 VIRSMPFEPDVMSWKSLLGG 560



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 1/231 (0%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G+  +  ++  L   CGTLG+   G+  H  + + + + +  +   ++ MY    +
Sbjct: 71  MDIAGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILQMYCDCKS 129

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
              A R FD +  +++ SW T++  + + G   EAV L   ML     P+    ++++ S
Sbjct: 130 FTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLIMS 189

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
               S+    +Q+H+  I+    A +SIE  + N Y KCG + GA      +     V  
Sbjct: 190 FADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVAC 249

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           T ++  Y     +++++ +F KM+S  V  D   F  +L AC+  G +  G
Sbjct: 250 TGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTG 300


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 323/602 (53%), Gaps = 54/602 (8%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIVTWNTLISGII-- 140
           H+ + + G  + + + N V+ +Y KC A      +FD++    ++++V+WN+++S  +  
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341

Query: 141 NCGGNVTPYFRRMLLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           +        F +M   ++   D I+  ++L AC        GR++H F ++ G   + FV
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFV 401

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +A+VD+Y KCG +E+A +VF  +  +D+V WN MV+ Y+     + A+++F  M  E +
Sbjct: 402 GNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENI 461

Query: 260 KGDYFTFS-----------------------------------SLVNSCGTLGSSKLGRQ 284
           + D  T++                                   SL+++C ++G+   G++
Sbjct: 462 ELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKE 521

Query: 285 IHGLVIKQSFDLD--------VLVATSLVDMYAKNGNIDDACRVFDGMTAKN--VVSWNT 334
            H   IK   +LD        + V   L+DMYAK  + + A ++FD ++ K+  VV+W  
Sbjct: 522 THCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTV 581

Query: 335 MVVGFGQNGDGREAVKLLRDMLQ--GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           M+ G+ Q+GD   A++L   M +   S  P++ TL+  L +C  L+     RQVHAY ++
Sbjct: 582 MIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR 641

Query: 393 NGV-QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           N      L + N LI+ YSK G +  A   F ++ + + V+WTS++  Y  HG  ++++ 
Sbjct: 642 NFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALR 701

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           VF++M    + PD I FL VL ACSH G+V  G+ +FN M  D+ + P  EHY C+ DL 
Sbjct: 702 VFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLW 761

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G L EA  L+  MP+EP      A + AC++H ++ L ++AA +LLELE     +Y 
Sbjct: 762 GRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYT 821

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           L+SN+YA+ R W DVAR+R  M+     K PGCSWI+    + TF   DRSHPQ+  +Y 
Sbjct: 822 LLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYE 881

Query: 632 ML 633
            L
Sbjct: 882 TL 883



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 221/454 (48%), Gaps = 53/454 (11%)

Query: 128 NIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++  WN LI   ++ G   +V   +R+M       DH TF  + +AC     + +G  LH
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLH 282

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNC 242
           + + + GF  N FV +A+V +YGKCG +  A  +FD++  R   DLV WN +VS Y    
Sbjct: 283 ATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWAS 342

Query: 243 LGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
             + A+A+F+ M     M  D  +  +++ +C +L +S  GRQ+HG  I+     DV V 
Sbjct: 343 DANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVG 402

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV------------------------- 336
            ++VDMYAK G +++A +VF  M  K+VVSWN MV                         
Sbjct: 403 NAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIE 462

Query: 337 ----------VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
                      G+ Q G G EA+ + R M      P+ VTL S+LS+C S+      ++ 
Sbjct: 463 LDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKET 522

Query: 387 HAYAIK-----NGVQAF---LSIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSI 436
           H YAIK     +G       L + N LI+ Y+KC S   A + F SV  K+ D+VTWT +
Sbjct: 523 HCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVM 582

Query: 437 IGAYAFHGLSKESIEVFEKM--LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           IG YA HG +  ++++F  M  +  +++P+       L AC+    +  G +    ++ +
Sbjct: 583 IGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRN 642

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           ++         CL D+  + G +  A  +  +MP
Sbjct: 643 FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP 676


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 178/486 (36%), Positives = 268/486 (55%), Gaps = 2/486 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           +R ML      D  +F  +L++C        G++LH  +++ G     FV +AL+ +Y K
Sbjct: 38  YRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCK 97

Query: 210 CGFVEDARRVFDEVLCRDL--VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
           CG VEDAR+VF+E        V +N ++S Y  N     A  +F  M+  G+  D  T  
Sbjct: 98  CGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTIL 157

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
            LV  C       LGR +HG  +K     +V V  S + MY K G+++   R+FD M  K
Sbjct: 158 GLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVK 217

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
            +++WN ++ G+ QNG   + ++L   M     CPD  TL S+LSSC  L      ++V 
Sbjct: 218 GLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVG 277

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
                NG    + + NALI+ Y++CG++A A   F  +    LV+WT++IG Y  HG+ +
Sbjct: 278 ELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGE 337

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
             + +F+ M+   +RPD   F+ VLSACSH GL  +GL  F  M  +Y + P  EHY+CL
Sbjct: 338 TGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCL 397

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            DLLGR G L EA + + SMP+EP     GA +GACK+H ++ +A+ A  K++E EP   
Sbjct: 398 VDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNI 457

Query: 568 VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
             Y L+SN+Y+  +    + R+R MMR+    K PG S++E  G++H F++ DRSH Q  
Sbjct: 458 GYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTE 517

Query: 628 HMYAML 633
            ++ ML
Sbjct: 518 EVHRML 523



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 214/435 (49%), Gaps = 16/435 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A       G+QLH H+++ G   +  +   ++ +Y KC   +D  K+F+E    + 
Sbjct: 57  LKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQ 116

Query: 130 --VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
             V +N LISG        +    FRRM    V +D +T   L+  C   + + +GR LH
Sbjct: 117 LGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLH 176

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +K G      V ++ + +Y KCG VE  RR+FDE+  + L+ WN ++S Y+ N L  
Sbjct: 177 GECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAY 236

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             + +F  M+  G+  D FT  S+++SC  LG+ K+G+++  LV    F  +V ++ +L+
Sbjct: 237 DVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALI 296

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
            MYA+ GN+  A  VFD M  K++VSW  M+  +G +G G   + L  DM++    PD  
Sbjct: 297 SMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGA 356

Query: 366 TLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
               +LS+C    ++ +  ++       Y ++ G + +    + L++   + G +  A++
Sbjct: 357 VFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY----SCLVDLLGRAGRLDEAME 412

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
              S+  EPD   W +++GA   H     +   F K++     P +I +  ++S      
Sbjct: 413 FIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPMNIGYYVLMSNIYSDS 470

Query: 480 LVSEGLRYFNLMISD 494
              EG+    +M+ +
Sbjct: 471 KNQEGIWRIRVMMRE 485



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 156/319 (48%), Gaps = 4/319 (1%)

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WNV +   A   L   +I+++  M   G   D F+F  ++ SC +L     G+Q+H  VI
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFD--GMTAKNVVSWNTMVVGFGQNGDGREA 348
           +   + +  V T+L+ MY K G ++DA +VF+    +++  V +N ++ G+  N    +A
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
             + R M +     D VT+  ++  C         R +H   +K G  + +++ N+ I  
Sbjct: 138 AFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITM 197

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KCGS+    + F  +    L+TW ++I  Y+ +GL+ + +E+FE+M S  V PD    
Sbjct: 198 YMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTL 257

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLS+C+H G    G     L+ ++    P+      L  +  R G L +A  +   MP
Sbjct: 258 VSVLSSCAHLGAKKIGQEVGELVEAN-GFAPNVFLSNALISMYARCGNLAKARAVFDIMP 316

Query: 529 IEPRSDTLGAFIGACKVHG 547
           ++    +  A IG   +HG
Sbjct: 317 VKSLV-SWTAMIGCYGMHG 334



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 2/148 (1%)

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           SWN  +          E++ L R ML+    PD  +   IL SC SLS+    +Q+H + 
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL--VTWTSIIGAYAFHGLSKE 448
           I+ G +A   +  ALI+ Y KCG +  A + F          V + ++I  Y  +    +
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +  +F +M    V  DS+  L ++  C+
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCT 164


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 324/623 (52%), Gaps = 49/623 (7%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH+  +K G    L+  N +L +YVK    D   KLFDE+  RN  TW  LISG    G 
Sbjct: 311 LHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGS 370

Query: 145 N--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           +  V   FR M       +  T +SL + C    ++++G+ +H+++L+ G   +  + ++
Sbjct: 371 SEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNS 430

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY----------------------AL 240
           ++DLY KC   E A RVF+ +   D+V WN+M+S Y                      + 
Sbjct: 431 ILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSW 490

Query: 241 NCLGDGAIAV-FNLMRLE--------GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N + DG +   +    LE        G +    TFS  +    +L   +LGRQ+HG+V+K
Sbjct: 491 NTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLK 550

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFD------------GMTAKN----VVSWNTM 335
             F  D  + +SLV+MY K G +D+A  V              G+T K     +VSW  M
Sbjct: 551 FGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLM 610

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           V G+  NG   + +K  R M++     D  T+ +I+S+C +  I    R VHAY  K G 
Sbjct: 611 VSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGH 670

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +    + ++LI+ YSK GS+  A   F    EP++V WTS+I   A HG  K++I +FE+
Sbjct: 671 RIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEE 730

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           ML+  + P+ + FL VL+AC H GL+ EG RYF +M   Y I P  EH T + DL GR G
Sbjct: 731 MLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAG 790

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            L E  + +    I   +    +F+ +C++H ++ + KW +E LL++ PS P  Y L+SN
Sbjct: 791 HLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSN 850

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCT 635
           + AS   W + AR+R +M      K PG SWI++  +IHTF+  DRSHPQ   +Y+ L  
Sbjct: 851 MCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDI 910

Query: 636 VFGLMEENNVSGHCNVLDKEMDE 658
           + G ++E   S    ++ ++++E
Sbjct: 911 LIGRLKEIGYSFDVKLVMQDVEE 933



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 216/468 (46%), Gaps = 60/468 (12%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ GK +H+ +++ G+   + L N +L +Y+KCK F+  E++F+ M   ++V+WN +IS 
Sbjct: 406 LQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISA 465

Query: 139 IINCGG--NVTPYFRRMLLDNV-------------------------------RLDHITF 165
            +  G        FRR+   +V                                   +TF
Sbjct: 466 YLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTF 525

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE--- 222
           +  L        +E+GR+LH  +LK GF  + F+ S+LV++Y KCG +++A  V  +   
Sbjct: 526 SIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPL 585

Query: 223 ---------VLCRDL----VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
                    V C++L    V W +MVS Y  N   +  +  F LM  E +  D  T +++
Sbjct: 586 DFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTI 645

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           +++C   G  + GR +H    K    +D  V +SL+DMY+K+G++DDA  +F      N+
Sbjct: 646 ISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNI 705

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSISCETRQV 386
           V W +M+ G   +G G++A+ L  +ML     P+EVT   +L++C   G L   C   ++
Sbjct: 706 VFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRM 765

Query: 387 --HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT-WTSIIGAYAFH 443
              AY I  GV+   S    +++ Y + G +              L + W S + +   H
Sbjct: 766 MKDAYCINPGVEHCTS----MVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLH 821

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
             + E  +   +ML      D  A++ + + C+      E  R  +LM
Sbjct: 822 K-NVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLM 868


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 291/538 (54%), Gaps = 33/538 (6%)

Query: 154 LLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           +LD+V R    T+++LL+ C+Q   ++ G ++H+     GF     +S+ ++D+Y KC  
Sbjct: 80  ILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNS 139

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM------------------ 254
           + +A+R+FDE+  RDL  WN+M+S YA       A  +F+ M                  
Sbjct: 140 LVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRH 199

Query: 255 --------------RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                         R E  K + FT SS + +   + S  LG++IHG +++   DLD +V
Sbjct: 200 DQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVV 259

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            ++L DMY K G+I +A  +FD    ++VVSW  M+  + + G   E   L  D+L+   
Sbjct: 260 WSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGI 319

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+E T + +L++C   +     +QVH Y  + G        + L++ Y+KCG+I  A +
Sbjct: 320 WPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARR 379

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +  PDLV+WTS+I  YA +G   E+++ FE +L    +PD I F+ VLSAC+H GL
Sbjct: 380 VFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGL 439

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V +GL YF+ +   + +   ++HY CL DLL R G L EA D++  MPIEP      + +
Sbjct: 440 VDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLL 499

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           G C++HG++ LAK AAE L E+EP  P  Y  ++N+YA+   W  VA +RK+M      K
Sbjct: 500 GGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVK 559

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
            PG SWIEI  E+H F+  D SH ++  ++  L  +   M+E       N +  +++E
Sbjct: 560 KPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYVPDTNFVLHDVEE 617



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 221/455 (48%), Gaps = 60/455 (13%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L++  +   L +G ++H+H    G    + + N++L +Y+KC +  + ++LFDEM 
Sbjct: 92  YSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMA 151

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRML-LDN----------VRLD-HITFNSLLRA 171
            R++ +WN +ISG    G        F +M   DN          VR D H     L RA
Sbjct: 152 ERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRA 211

Query: 172 CVQADD--------------------IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
             + ++                    + +G+ +H  IL++G  L+  V SAL D+YGKCG
Sbjct: 212 MQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCG 271

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            + +AR +FD+ + RD+V W  M+  Y      +   A+F+ +   G+  + FTFS ++N
Sbjct: 272 SIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLN 331

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C    + +LG+Q+HG + +  FD     A++LV MY K GNI +A RVF+GM   ++VS
Sbjct: 332 ACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVS 391

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           W +++ G+ QNG   EA++    +L+    PD +T   +LS+C            HA  +
Sbjct: 392 WTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSAC-----------THAGLV 440

Query: 392 KNGVQAFLSIENA------------LINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIG 438
             G++ F SI+              LI+  S+ G +  A      +  EPD   W S++G
Sbjct: 441 DKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLG 500

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
               HG  K +    E +    + P++ A    L+
Sbjct: 501 GCRIHGNLKLAKRAAEALFE--IEPENPATYTTLA 533



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 159/322 (49%), Gaps = 22/322 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GK++H HI+++GL     + + +  +Y KC +  +   +FD+   R++V+W  +I  
Sbjct: 238 LHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDR 297

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G     +  F  +L   +  +  TF+ +L AC      E+G+++H ++ ++GF  +
Sbjct: 298 YFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPS 357

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F +S LV +Y KCG +++ARRVF+ +   DLV W  ++S YA N   D A+  F L+  
Sbjct: 358 SFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLK 417

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLG-------RQIHGLVIKQSFDLDVLVATSLVDMYA 309
            G + D+ TF  ++++C   G    G       ++ HGL               L+D+ +
Sbjct: 418 SGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADH------YACLIDLLS 471

Query: 310 KNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE---- 364
           ++G + +A  + D M  + +   W +++ G   +G+ + A +    + +    P+     
Sbjct: 472 RSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFE--IEPENPATY 529

Query: 365 VTLASILSSCGSLSISCETRQV 386
            TLA+I ++ G      E R+V
Sbjct: 530 TTLANIYATAGLWGGVAEVRKV 551



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           REA+++L  + +    P   T +++L  C  L    E  +VHA+   +G    + I N +
Sbjct: 75  REAIQILDHVDR----PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRI 130

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y KC S+  A + F  + E DL +W  +I  YA  G  +E+ ++F++M       D+
Sbjct: 131 LDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTER----DN 186

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLM 491
            ++  + S         E L  F  M
Sbjct: 187 FSWTAMTSGYVRHDQHEEALELFRAM 212



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+  +   + +A ++ D +   +  +++T++    Q     E +K+        F P  
Sbjct: 65  IDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGV 124

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           V    IL     + I C +            +  L   N +I+ Y+K G +  A + F  
Sbjct: 125 VISNRILD----MYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQ 180

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           + E D  +WT++   Y  H   +E++E+F  M  H
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRH 215


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 299/538 (55%), Gaps = 4/538 (0%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLD-NVRLDHITF 165
           +Y      D   K+FD +   + V WNTL++G+   G      F RM+ D +VR D  T 
Sbjct: 158 LYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL--SGSEAVESFARMVCDGSVRPDATTL 215

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
            S+L A  +  D+ +GR +HSF  K G   +  V + L+ LY KCG VE AR +FD +  
Sbjct: 216 ASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEK 275

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
            DLV +N ++S Y++N +   ++ +F  +   G+  +  T  +L+      G   L + +
Sbjct: 276 PDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCL 335

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           HG V+K  F  +  V+T++  ++ +  +++ A + FD M  K + SWN M+ G+ QNG  
Sbjct: 336 HGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLT 395

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
             AV L   M++ +  P+ +T++S LS+C  L      + +H    +  ++  + +  AL
Sbjct: 396 EMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTAL 455

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y+KCGSI+ A + F ++   ++V+W ++I  Y  HG   E++++++ ML   + P S
Sbjct: 456 IDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTS 515

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
             FL VL ACSHGGLV EG + F  M  DY I P  EH TC+ DLLGR G L EA++L++
Sbjct: 516 ATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELIS 575

Query: 526 SMPIEPRSDTL-GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             P       + GA +GAC VH    LAK A++KL EL+P     Y L+SN++ S++ + 
Sbjct: 576 EFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYS 635

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           + A +R+  +     K PG + IEI  + H F++ DR+HPQ+  +Y+ L  +   M E
Sbjct: 636 EAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIE 693



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 195/386 (50%), Gaps = 13/386 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L  +A+   +  G+ +HS   K GL     +   ++ +Y KC   +    LFD M  
Sbjct: 216 ASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEK 275

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++V +N LISG    G  G+    F  ++   +  +  T  +L+          + + L
Sbjct: 276 PDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCL 335

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H F+LK GF  N  VS+A+  L+ +   +E AR+ FD +  + +  WN M+S YA N L 
Sbjct: 336 HGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLT 395

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+A+F  M    ++ +  T SS +++C  LG+  LG+ +H ++ ++  + +V V T+L
Sbjct: 396 EMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTAL 455

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMYAK G+I +A R+F+ M  KNVVSWN M+ G+G +G G EA+KL +DML     P  
Sbjct: 456 IDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTS 515

Query: 365 VTLASILSSCGSLSISCETRQVHA-----YAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
            T  S+L +C    +  E  +V       YAI  G++        +++   + G +  A 
Sbjct: 516 ATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHC----TCMVDLLGRAGQLKEAF 571

Query: 420 QCFGSVKEPDL--VTWTSIIGAYAFH 443
           +      +  +    W +++GA   H
Sbjct: 572 ELISEFPKSAVGPGVWGALLGACMVH 597



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 154/318 (48%), Gaps = 41/318 (12%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  VA++L  +Y     +D A +VFD + + + V WNT++ G      G EAV+    M+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 357 -QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
             GS  PD  TLAS+L +   ++     R VH++A K G+     +   LI+ YSKCG +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS---IAFLEV- 471
             A   F  +++PDLV + ++I  Y+ +G+   S+ +F ++++  + P+S   +A + V 
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 472 -------LSACSHGGL----------VSEGLRYFNLMISD-------YHILPDS--EHYT 505
                  L+ C HG +          VS  +   +  ++D       +  +P+   E + 
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 506 CLTDLLGRVGLL---VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE- 561
            +     + GL    V  ++ +  + + P   T+ + + AC   G++ L KW    + E 
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE 443

Query: 562 -LEPSKPVNYALVSNVYA 578
            LEP+  V  AL+ ++YA
Sbjct: 444 DLEPNVYVMTALI-DMYA 460



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 115/301 (38%), Gaps = 64/301 (21%)

Query: 294 FDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           + LD   ATSL+  YA          R+F G    +    N ++           ++  L
Sbjct: 47  YPLDPAPATSLLLRYASLRAPTGHLLRLFRGFPRPDRFLRNALL----------RSLPSL 96

Query: 353 RDMLQGSFCPDEVTLASILSSCGSL-------SISCETRQVHAYAIKNGVQAFLSIENAL 405
           R  L    CPD  + A   +S  +L       + S   R +HA A+  G  A   + +AL
Sbjct: 97  RPRLLFP-CPDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASAL 155

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS-KESIEVFEKML-SHAVRP 463
              Y     +  A + F +V  PD V W +++      GLS  E++E F +M+   +VRP
Sbjct: 156 AKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLA-----GLSGSEAVESFARMVCDGSVRP 210

Query: 464 DSIAFLEVLSA-----------CSHG-----GLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           D+     VL A           C H      GL +E       +IS Y    D E   CL
Sbjct: 211 DATTLASVLPAAAEVADVTMGRCVHSFAEKCGL-AEHEHVLTGLISLYSKCGDVESARCL 269

Query: 508 TDLL------------------GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            D++                  G VG  V  +  L ++ + P S TL A I    VH   
Sbjct: 270 FDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALI---PVHSPF 326

Query: 550 G 550
           G
Sbjct: 327 G 327


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 309/593 (52%), Gaps = 38/593 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+QLH HI+ LG      L  +++  Y       D   + +   + +   WN LIS 
Sbjct: 190 LAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISS 249

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G        +++M+   +R D+ T+ S+L+AC +  D+  G+ +H  I       +
Sbjct: 250 YVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWS 309

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA----------------- 239
             V +AL+ +YGKCG V  AR +FD++  RD V WN M+S YA                 
Sbjct: 310 LIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWA 369

Query: 240 ----LNCL--------------GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
               LN +                GA+ + + MR  G   D       + +C  +G +KL
Sbjct: 370 EDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKL 429

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G++IH   I+  F     V  SL+ MY++  ++  A  +F  M AK+++SWN+++ G   
Sbjct: 430 GKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCH 489

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLS 400
                EA  LLR+ML     P+ VT+AS+L  C  ++     ++ H Y  +    +  L 
Sbjct: 490 MDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLL 549

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NAL++ Y++ G +  A + F  + E D +T+TS+I  Y   G  + ++++FE+M +  
Sbjct: 550 LWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQ 609

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD I  + VLSACSH GLV++G   F  M S Y + P  EH+ C+TDL GR GLL +A
Sbjct: 610 IKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKA 669

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++ +MP +P        IGAC++H +  + +WAAEKLLE++P  P  Y L++N+YA+ 
Sbjct: 670 KEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAA 729

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            CW  +A++R  MRD    K PGC+W+++      F+  D S+  A  +Y +L
Sbjct: 730 GCWNKLAKVRXFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLL 782



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 210/444 (47%), Gaps = 44/444 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK   +   L  GK++H  I    +   L + N ++ +Y KC        LFD++ 
Sbjct: 278 YPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIP 337

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSL--------------- 168
            R+ V+WN++IS   + G        F  M  +++ L+ I +N++               
Sbjct: 338 ERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALE 397

Query: 169 --------------------LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
                               L AC    D ++G+ +HSF ++  FG    V ++L+ +Y 
Sbjct: 398 LLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYS 457

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           +C  ++ A  +F  +  + L+ WN ++S        + A  +   M L G++ +Y T +S
Sbjct: 458 RCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIAS 517

Query: 269 LVNSCGTLGSSKLGRQIH-GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           ++  C  + + + G++ H  +  ++ F   +L+  +LVDMYA++G + +A RVFD +  +
Sbjct: 518 VLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGER 577

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           + +++ +M+ G+G  G+G+ A+KL  +M      PD +T+ ++LS+C    +  +  Q+ 
Sbjct: 578 DKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG-QLL 636

Query: 388 AYAIKN--GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
              +++  G+   L     + + + + G +  A +   ++  +P    W ++IGA   H 
Sbjct: 637 FEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHR 696

Query: 445 LSKESIEVFEKMLSHAVRPDSIAF 468
            ++      EK+L   ++P++  +
Sbjct: 697 NTEIGEWAAEKLLE--MKPENPGY 718



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/470 (22%), Positives = 200/470 (42%), Gaps = 50/470 (10%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFR-----RMLL 155
           Q +H    C A +  ++ F  +    I   ++L++ +      GN+   F+     R+  
Sbjct: 109 QHVHPSASCNALESAQETFTSVDASMI---DSLLTSLKEFTSRGNLLDAFKTVSLIRLHA 165

Query: 156 DNVRLDHIT--FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
            +   D I    +SLL +C     +  GR+LH  I+ +GF  +  +   LV  Y     +
Sbjct: 166 SSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLL 225

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
            DA  + +         WN+++S Y  N     A++ +  M  +G++ D FT+ S++ +C
Sbjct: 226 VDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 285

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
           G       G+++H  +        ++V  +L+ MY K G +  A  +FD +  ++ VSWN
Sbjct: 286 GEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWN 345

Query: 334 TMVV-----------------------------------GFGQNGDGREAVKLLRDMLQG 358
           +M+                                    G+ + G+ + A++LL  M + 
Sbjct: 346 SMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKX 405

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               D V L   L +C  +  +   +++H++AI++      +++N+LI  YS+C  +  A
Sbjct: 406 GSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHA 465

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  ++   L++W SII        S+E+  +  +ML   + P+ +    VL  C+  
Sbjct: 466 YLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARV 525

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA---YDLLA 525
             +  G  +   M            +  L D+  R G ++EA   +D+L 
Sbjct: 526 ANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLG 575


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 311/590 (52%), Gaps = 69/590 (11%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140
           +++H+ ++  GL   L  + +++ +Y      +    +FD +R  ++ +W  +I      
Sbjct: 103 RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLN 162

Query: 141 NCGGNVTPYFRRMLLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           +    +  ++   L   +   D++ F+ +L+AC +  + + GR+LH  I+KVG   + FV
Sbjct: 163 DSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFV 221

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-CLGDGAIAVFNLMRLEG 258
            + LVD+Y KC  VED+RRVFDE+L R++V W  M+  Y  N CL +G + +FN MR   
Sbjct: 222 LTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEG-LVLFNRMREGL 280

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++G+ +T  SLV +C  LG+   G+ +HG VIK  FDL+  + T L+D+Y K G+I DA 
Sbjct: 281 VEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAF 340

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---G 375
            VFD ++  ++VSW  M+VG+ Q G  REA+KL  D       P+ VT +S+LS+C   G
Sbjct: 341 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTG 400

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           SL++    R VH   IK G +   + ENAL++ Y+KC  I  A   F +V + D++ W S
Sbjct: 401 SLNMG---RSVHCLGIKLGSED-ATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNS 456

Query: 436 IIGAY---------------------------------------------AFHGLS---- 446
           II  Y                                             + HG +    
Sbjct: 457 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAG 516

Query: 447 -------KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
                    S+E+F  ML   + P+ + F  +LSACSH G++ EG RYFN M   Y+ +P
Sbjct: 517 LLSGRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVP 576

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
             +HY C+ DLL R G L EA D +  +PI+P    LGAF+  C++H    L + A  ++
Sbjct: 577 SMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRM 636

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
           LEL P K   Y L+SN+YASE  W    ++ ++M+     K+PG S ++I
Sbjct: 637 LELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDI 686



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 48/303 (15%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
            K G L QGK +H +++K G      L   +L +Y KC    D   +FDE+   ++V+W 
Sbjct: 296 TKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWT 355

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +I G    G        F      ++  + +T +S+L AC Q   + +GR +H   +K+
Sbjct: 356 AMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKL 415

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G     F  +ALVD+Y KC  + DAR VF+ V  +D++ WN ++S Y  N     A+ +F
Sbjct: 416 GSEDATF-ENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELF 474

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           + MR + +  D  T  S++++C ++G+ ++G  +HG  IK                    
Sbjct: 475 DQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIK-------------------- 514

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
                                     G     D   +++L  DML+    P+EV   +IL
Sbjct: 515 -------------------------AGLLSGRDCSRSLELFGDMLKEKLEPNEVIFTTIL 549

Query: 372 SSC 374
           S+C
Sbjct: 550 SAC 552


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/645 (30%), Positives = 330/645 (51%), Gaps = 20/645 (3%)

Query: 3   SRCPAPPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSA 62
           SR P P   +   K   +  +    QN +T     +  D     + LR   T+  +    
Sbjct: 24  SRRPPPSSVSAADKNNWNGRSIQAAQNGSTMEAPLRPLDVGEAMAMLREGKTVQSA---- 79

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
              Y   L V  + G L   + LH H++K G    + +   +++ Y++C A  D   LFD
Sbjct: 80  --MYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFD 137

Query: 123 EMRVRNIVTWNTLISG-IINCGG-NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +M  +N+VTW  LI+G  +N         F  ML       H T  ++L AC  +++ ++
Sbjct: 138 QMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADL 197

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYA 239
           G ++H + +K        + ++L  +Y K G +E A R F  V  ++++ W  M+S C  
Sbjct: 198 GSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAE 257

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                +  + +F  M ++G+  + FT +S+++ CGT     LG+Q+     K     ++ 
Sbjct: 258 DENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIP 317

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ-----------NGDGREA 348
           V  S + +Y + G  D+A R F+ M   ++++WN M+ G+ Q              G +A
Sbjct: 318 VKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQA 377

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           +K+ R++ + +  PD  T +SILS C S+    +  Q+HA  IK G  + + + +AL+N 
Sbjct: 378 LKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNM 437

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+KCG I  A + F  +    LVTWTS+I  Y+ HG  +E+I++FE M    VRP+ I F
Sbjct: 438 YNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITF 497

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLSACS+ GL  +   YF++M  +Y I P  +HY C+ D+  R+G L +A+  +    
Sbjct: 498 VCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTG 557

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
            EP      + +  C+ HG++ LA +AA++L+EL P     Y L+ N+Y S   W DVAR
Sbjct: 558 FEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVAR 617

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +RK+M+      +   SWI I  +++ F ++D++H  +  +Y +L
Sbjct: 618 VRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLL 662


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 304/551 (55%), Gaps = 23/551 (4%)

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           ++  K+FD++   N   WN +  G        +V   FR+M   +V  +  TF  +L++C
Sbjct: 2   ENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSC 61

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
           V+ + ++ G  +H F++K GF  N FV++ L+D+Y   G +  A RVF E++ R+++ W 
Sbjct: 62  VKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWT 121

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M++ Y   C    A  +F+L      + D   ++++++  G + +  + R       ++
Sbjct: 122 AMINGYITCCDLVTARRLFDL----APERDIVLWNTMIS--GYIEAKDVIRA------RE 169

Query: 293 SFDL----DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
            FD     DV+   ++++ YA NG++    R+F+ M  +NV SWN ++ G+ +NG   E 
Sbjct: 170 LFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEV 229

Query: 349 VKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           +   + ML  G+  P++ TL ++LS+C  L      + VH YA  +G +  + + NAL++
Sbjct: 230 LSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMD 289

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y+KCG +  AL  F S+   DL++W +IIG  A HG   +++ +F  M      PD I 
Sbjct: 290 MYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGIT 349

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           F+ +L AC+H GLV +G  YF  M  DY I+P  EHY C+ DLLGR GLL  A D +  M
Sbjct: 350 FIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKM 409

Query: 528 PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587
           PIE  +    A +GAC+V+ ++ LA+ A EKL+E EP  P NY ++SN+Y     W DVA
Sbjct: 410 PIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVA 469

Query: 588 RLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSG 647
           RL+  MRD    K+PGCS IE+   +  F S D  HP+   +Y  L T+  L+     SG
Sbjct: 470 RLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRS---SG 526

Query: 648 HCNVLDKEMDE 658
           +   L  E+DE
Sbjct: 527 YVPGL-MELDE 536



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 178/377 (47%), Gaps = 17/377 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK   K   L++G+++H  ++K G      +   ++ +Y    A     ++F EM  RN+
Sbjct: 58  LKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNV 117

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           + W  +I+G I C   VT   RR+       D + +N+++   ++A D+   R L   + 
Sbjct: 118 IAWTAMINGYITCCDLVTA--RRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMP 175

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
                 +    + +++ Y   G V    R+F+E+  R++  WN ++  Y  N      ++
Sbjct: 176 NK----DVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLS 231

Query: 250 VFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            F  M ++G +  +  T  +++++C  LG+  LG+ +H       +  +V V  +L+DMY
Sbjct: 232 AFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMY 291

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK G ++ A  VF  M  K+++SWNT++ G   +G G +A+ L   M      PD +T  
Sbjct: 292 AKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFI 351

Query: 369 SILSSCGSLSI-----SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            IL +C  + +     S        Y+I   ++ +      +++   + G +A A+    
Sbjct: 352 GILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHY----GCIVDLLGRAGLLAHAVDFIR 407

Query: 424 SVK-EPDLVTWTSIIGA 439
            +  E D V W +++GA
Sbjct: 408 KMPIEADAVIWAALLGA 424



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 15/338 (4%)

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +E+A +VFD++   +  +WN M   Y+ N      I +F  M+   +  + FTF  ++ S
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  + + K G ++H  VIK  F  +  VAT+L+DMYA  G I  A RVF  M  +NV++W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCP--DEVTLASILSSCGSLSISCETRQVHAYA 390
             M+ G+    D   A +L          P  D V   +++S           R++    
Sbjct: 121 TAMINGYITCCDLVTARRLF------DLAPERDIVLWNTMISGYIEAKDVIRARELFDKM 174

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
               V ++    N ++N Y+  G +    + F  + E ++ +W ++IG Y  +G   E +
Sbjct: 175 PNKDVMSW----NTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVL 230

Query: 451 EVFEKML-SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
             F++ML    V P+    + VLSAC+  G +  G ++ ++    +    +      L D
Sbjct: 231 SAFKRMLVDGTVVPNDATLVNVLSACARLGALDLG-KWVHVYAESHGYKGNVYVRNALMD 289

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +  + G++  A D+  SM  +    +    IG   VHG
Sbjct: 290 MYAKCGVVETALDVFKSMDNKDLI-SWNTIIGGLAVHG 326


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 319/562 (56%), Gaps = 11/562 (1%)

Query: 79  LQQGKQLHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           +++    +  ++KLG      L + +  + +Y +    +   ++FD    RNI  WNT+I
Sbjct: 234 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMI 293

Query: 137 SGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
              +       ++  +   +    +  D +TF     A      +E+GR+ H F+ K   
Sbjct: 294 GVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFR 353

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
            L   + ++L+ +Y +CGFV+ +  VF  +  RD+V WN M+S +  N L D  + +   
Sbjct: 354 ELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYE 413

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M+ +G K DY T ++L+++   L + ++G+Q HG +I+Q    + +  + L+DMYAK+G 
Sbjct: 414 MQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGM-NSYLIDMYAKSGL 472

Query: 314 IDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           I  + ++F+G     ++  +WN+M+ G+ QNG   E   + R ML+ +  P+ VT+ASIL
Sbjct: 473 IRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASIL 532

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +C  +      +Q+H ++I+  +   + + +AL++ YSK G+I  A   F   KE + V
Sbjct: 533 PACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSV 592

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           T+T++I  Y  HG+ + +I +F  M    ++PD+IAF+ VLSACS+ GLV EGL+ F  M
Sbjct: 593 TYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDM 652

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR-SDTLGAFIGACKVHGSIG 550
              Y+I P SEHY C+TD+LGRVG + EAY+ +  +  E   ++  G+ +G+C++HG + 
Sbjct: 653 REVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELE 712

Query: 551 LAKWAAEKLLELEPSKPVN--YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           LA+  +E+L +L+  K  +    L+SN+YA E+ W  V R+RK MR+    K  G S IE
Sbjct: 713 LAETVSERLAKLDKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIE 772

Query: 609 IAGEIHTFVSSDRSHPQAVHMY 630
           +AG ++ FVS D+ HP +  +Y
Sbjct: 773 VAGHVNCFVSRDQEHPHSGEIY 794



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 248/501 (49%), Gaps = 24/501 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK----------AFD 115
           YS  LK  A+   L+ GK +H H+++    +   + N ++++YV C            +D
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYD 169

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACV 173
            + K+FD MR +N+V WNTLIS  +  G N      F  M+   ++   ++F ++  A  
Sbjct: 170 VVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVA 229

Query: 174 QADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
            +  I+     +  +LK+G  +  + FV S+ + +Y + G +E +RRVFD  + R++ +W
Sbjct: 230 TSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVW 289

Query: 232 NVMVSCYALN-CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           N M+  Y  N CL +        +  + +  D  TF    ++   L   +LGRQ HG V 
Sbjct: 290 NTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVS 349

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K   +L +++  SL+ MY++ G +  +  VF  M  ++VVSWNTM+  F QNG   E + 
Sbjct: 350 KNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLM 409

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L+ +M +  F  D +T+ ++LS+  +L      +Q H + I+ G+Q F  + + LI+ Y+
Sbjct: 410 LVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQ-FEGMNSYLIDMYA 468

Query: 411 KCGSIAGALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           K G I  + + F      E D  TW S+I  Y  +G ++E+  VF KML   +RP+++  
Sbjct: 469 KSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTV 528

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLAS 526
             +L ACS  G V  G +     I  Y    D   +  + L D+  + G +  A ++  S
Sbjct: 529 ASILPACSQVGSVDLGKQLHGFSIRQY---LDQNVFVASALVDMYSKAGAIKYAENMF-S 584

Query: 527 MPIEPRSDTLGAFIGACKVHG 547
              E  S T    I     HG
Sbjct: 585 QTKERNSVTYTTMILGYGQHG 605



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 192/397 (48%), Gaps = 28/397 (7%)

Query: 119 KLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRM--LLDNVRLDHITFNSLLRACVQ 174
           +LFD +     V WNT+I G I  N       ++ RM       + D  T++S L+AC +
Sbjct: 60  QLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKACAE 119

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC---------GFVED-ARRVFDEVL 224
             +++ G+ +H  +++     +  V ++L+++Y  C          F  D  R+VFD + 
Sbjct: 120 TKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMR 179

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            +++V WN ++S Y        A   F +M    +K    +F ++  +  T  S K    
Sbjct: 180 RKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANV 239

Query: 285 IHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
            +GL++K    +  D+ V +S + MYA+ G+++ + RVFD    +N+  WNTM+  + QN
Sbjct: 240 FYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQN 299

Query: 343 GDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
               E+++L  + +       DEVT     S+   L      RQ H +  KN  +  + I
Sbjct: 300 DCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVI 359

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            N+L+  YS+CG +  +   F S++E D+V+W ++I A+  +GL  E + +  +M     
Sbjct: 360 INSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 419

Query: 462 RPDSIAFLEVLSACS-----------HGGLVSEGLRY 487
           + D I    +LSA S           HG L+ +G+++
Sbjct: 420 KIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQF 456



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 16/327 (4%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG--MKGDYFTFSSLVNSC 273
           AR++FD +     VLWN ++  +  N L   A+  ++ M+      K D +T+SS + +C
Sbjct: 58  ARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKAC 117

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY-----AKNGNID----DACR-VFDG 323
               + K G+ +H  +I+   +   +V  SL++MY     A    +D    D  R VFD 
Sbjct: 118 AETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDN 177

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  KNVV+WNT++  + + G   EA +    M++    P  V+  ++  +  +     + 
Sbjct: 178 MRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKA 237

Query: 384 RQVHAYAIKNGVQAF--LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              +   +K G +    L + ++ I+ Y++ G +  + + F S  E ++  W ++IG Y 
Sbjct: 238 NVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYV 297

Query: 442 FHGLSKESIEVF-EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
            +    ESIE+F E + S  +  D + FL   SA S    V  G ++   +  ++  LP 
Sbjct: 298 QNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPI 357

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASM 527
                 L  +  R G + +++ +  SM
Sbjct: 358 V-IINSLMVMYSRCGFVQKSFGVFHSM 383



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 12/195 (6%)

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCP-DEVTL 367
           + GN   A ++FD +     V WNT+++GF  N    EA+     M +   F   D  T 
Sbjct: 51  QEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTY 110

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA-LQC----- 421
           +S L +C         + VH + I+    +   + N+L+N Y  C +  G+ L C     
Sbjct: 111 SSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDV 170

Query: 422 ----FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
               F +++  ++V W ++I  Y   G + E+   F  M+   ++P  ++F+ V  A + 
Sbjct: 171 VRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVAT 230

Query: 478 GGLVSEGLRYFNLMI 492
              + +   ++ LM+
Sbjct: 231 SRSIKKANVFYGLML 245



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 9/153 (5%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G +  GKQLH   ++  L   + + + ++ +Y K  A    E +F + + RN 
Sbjct: 532 LPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNS 591

Query: 130 VTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VT+ T+I G      G      F  M    ++ D I F ++L AC  +  ++ G ++   
Sbjct: 592 VTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFED 651

Query: 188 ILKVGFGLNCFVSSA----LVDLYGKCGFVEDA 216
           + +V    N   SS     + D+ G+ G V +A
Sbjct: 652 MREV---YNIQPSSEHYCCITDMLGRVGRVNEA 681


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/610 (32%), Positives = 316/610 (51%), Gaps = 10/610 (1%)

Query: 36  NAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC 95
           N   H    + + LR S  +  ++    S Y+ A+  ++ F   + G  +H   +  G  
Sbjct: 96  NESPHSSLAVFAHLRKSTDLKPNS----STYAFAISAASGFRDDRAGCVIHGQAIVDGCD 151

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRM 153
           ++L L + ++ +Y K    +D  K+FD M  ++ + WNT+ISG       V     FR +
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 154 LLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           + ++  RLD  T   +L A  +  ++ +G ++HS   K G   + +V +  + LY KCG 
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           ++ A  +F E    D+V +N M+  Y  N   + ++++F  + L G K    T  SLV  
Sbjct: 272 IKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPV 331

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
            G L    L   IHG  +K +F     V+T+L  +Y+K   I+ A ++FD    K++ SW
Sbjct: 332 SGHL---MLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSW 388

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N M+ G+ QNG   +A+ L R+M    F P+ VT+  ILS+C  L      + VH     
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRS 448

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
              ++ + +  ALI  Y+KCGSIA A + F  + + + VTW ++I  Y  HG  +E++ +
Sbjct: 449 TDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTI 508

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F +ML+  + P  + FL VL ACSH GLV EG   FN MI  Y   P  +HY C+ D+LG
Sbjct: 509 FSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILG 568

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572
           R G L  A   + +MPI+P        +GAC++H    LA+  +EKL EL+P     + L
Sbjct: 569 RAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVL 628

Query: 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           +SN+++++R +   A +R+  +     K PG + IEI    H F S D+SHPQ   ++  
Sbjct: 629 LSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEK 688

Query: 633 LCTVFGLMEE 642
           L  + G M E
Sbjct: 689 LEKLEGKMRE 698



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 161/322 (50%), Gaps = 4/322 (1%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           I+ N+ L    ++  I    + H+ I+  GF  +  + + L       G +  AR +F  
Sbjct: 18  ISKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
           V   D+ L+NV++  +++N     ++AVF +L +   +K +  T++  +++       + 
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G  IHG  I    D ++L+ +++V MY K   ++DA +VFD M  K+ + WNTM+ G+ +
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 342 NGDGREAVKLLRDMLQGSFCP--DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           N    E++++ RD++  S C   D  TL  IL +   L       Q+H+ A K G  +  
Sbjct: 198 NEMYVESIQVFRDLINES-CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD 256

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +    I+ YSKCG I  A   F   + PD+V + ++I  Y  +G ++ S+ +F++++  
Sbjct: 257 YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 460 AVRPDSIAFLEVLSACSHGGLV 481
             +  S   + ++    H  L+
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLI 338


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/584 (32%), Positives = 311/584 (53%), Gaps = 13/584 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A+  +++    + G  LH+H +  G+ + L + + ++ +Y K    +   K+FD M 
Sbjct: 116 YAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFR---RMLLD----NVRLDHITFNSLLRACVQADDI 178
            R+ V WNT+ISG      +   YF    R+ +D     +  D  T  ++L A  +  + 
Sbjct: 176 ERDTVLWNTMISGF-----SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G  +     K G   + +V + L+ LY KCG     R +FD++   DL+ +N M+S Y
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   + A+ +F  +   G + +  T   L+         +L R I  L +K    L  
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V+T+L  +Y +   +  A ++FD    K++ SWN M+ G+ QNG    A+ L ++M+  
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP- 409

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              P+ VT+ SILS+C  L      + VH       +++ + +  AL++ Y+KCGSI  A
Sbjct: 410 QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            Q F  + + ++VTW ++I  Y  HG  KE++++F +ML   + P  + FL +L ACSH 
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLVSEG   F+ M ++Y   P SEHY C+ D+LGR G L  A + +  MP+EP     GA
Sbjct: 530 GLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGA 589

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +GAC +H +  +A  A+++L +L+P     Y L+SN+Y+++R +   A +R++++    
Sbjct: 590 LLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKL 649

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            K PGC+ IEI  + + F S DRSHPQA  ++ ML  + G M E
Sbjct: 650 AKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMRE 693



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 239/505 (47%), Gaps = 11/505 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q  Q+ + ++  G+   LS   ++ H +    A   + +LF+++   ++  +N LI G
Sbjct: 27  LSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRG 86

Query: 139 IINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
             + G    ++  Y       N+R D+ T+   + A  + +D  VG  LH+  +  G   
Sbjct: 87  FSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVAS 146

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N FV SA+VDLY K    E AR+VFD +  RD VLWN M+S ++ N   + +I VF  M 
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDML 206

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G+  D  T ++++ +   L   +LG  I  L  K+    DV V T L+ +Y+K G   
Sbjct: 207 DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSC 266

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
               +FD +   +++S+N M+ G+  N +   AV L R++L      +  TL  ++    
Sbjct: 267 KGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYL 326

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
             +    +R +   ++K G+    S+  AL   Y +   +  A Q F    E  L +W +
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  Y  +GL+  +I +F++M+   + P+ +    +LSAC+  G +S G ++ + +I   
Sbjct: 387 MISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSE 444

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            +  +    T L D+  + G +VEA  L   M ++    T  A I    +HG     K A
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGH---GKEA 500

Query: 556 AEKLLELEPS--KPVNYALVSNVYA 578
            +   E+  S   P     +S +YA
Sbjct: 501 LKLFYEMLQSGIPPTGVTFLSILYA 525


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 321/566 (56%), Gaps = 11/566 (1%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
            L NS  +++S  +    Y+  L+   K     +G+Q H+H++K GL     + N +L +
Sbjct: 45  HLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSL 104

Query: 108 YVKCKAFDDM--EKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHI 163
           Y K  + D +   ++FD + V+++V+W ++I+G +  G  G     F  ML   +  +  
Sbjct: 105 YFKLGS-DSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGF 163

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T +++++AC +  ++ +G+  H  +++ GF  N  + S+L+D+YG+     DAR++FDE+
Sbjct: 164 TLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDEL 223

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           L  D V W  ++S +  N L + A+  F L  R   +  D +TF S++ +CG LG  + G
Sbjct: 224 LEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQG 283

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
            +IH  VI   F  +V+  +SLVDMY K G ++ + R+FD M+ +N VSW+ ++  +  N
Sbjct: 284 EEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHN 343

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           GD  +AV L R+M +     D  +  +++ +C  L+     +++H   I+ G    + +E
Sbjct: 344 GDYEKAVNLFREMKE----VDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVE 399

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           +AL++ Y+KCG I  A + F  +   +L+TW S+I  +A +G S  +I++FE M+   ++
Sbjct: 400 SALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIK 459

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD I+F+ +L ACSH GLV +   YF+LM   Y I P  EHY C+ DLLGR GLL EA +
Sbjct: 460 PDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAEN 519

Query: 523 LLASMPIEPRSDTLGAFIGACKVH-GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           L+ +      S      +GAC     +   A+  A+KL+ELEP   ++Y  ++NVY +  
Sbjct: 520 LIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAVG 579

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWI 607
            W D  ++R++M++    K+PG SW+
Sbjct: 580 RWDDAVKVRELMKNRQLKKMPGQSWM 605


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/622 (31%), Positives = 320/622 (51%), Gaps = 42/622 (6%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           HSA S  S  + V A       G Q+H+H +  G+    +L  +++  Y       + + 
Sbjct: 45  HSAASLLSACVDVLA----FVPGLQIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQS 100

Query: 120 LFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           + +   + + + WN LI+          V   ++RM+   +R D  T+ S+L+AC +  D
Sbjct: 101 INENSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLD 160

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +  GR +H  I    +  + +V +AL+ +Y + G V  ARR+FD +  RD V WN +++C
Sbjct: 161 VASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGNVGIARRLFDHMSERDAVSWNAVINC 220

Query: 238 YALNCLGDGAIAVFNLMRLEGMK----------------GDYFTFSSLVN---------- 271
           YA   +   A  +F+ MR  G++                G+Y     L++          
Sbjct: 221 YASVGMWSEAFELFDKMRFSGVEVSVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLD 280

Query: 272 ---------SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
                    +C  +G+ +LG++IHGL I +S+D    V  +L+ MY+K  ++ +A  VF 
Sbjct: 281 PVAMIIGLKACSLIGAIRLGKEIHGLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQ 340

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
                ++ +WN+++ G+ Q     EA  LLR+ML   F P+ +TLASIL  C  ++    
Sbjct: 341 KTEENSLCTWNSIISGYAQVNKSEEASYLLREMLLAGFQPNFITLASILPLCARIANLQH 400

Query: 383 TRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
            ++ H Y ++    + +  + N+L++ Y+K G I  A Q    + E D VT+TS+I  Y 
Sbjct: 401 GKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYG 460

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
             G  + ++ +F++M+   ++PD +  + VLSACSH  LV EG R F  M   Y I P  
Sbjct: 461 NQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCL 520

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           +H++C+ DL GR G L +A D++  MP EP   T    + AC +HG+  + KWAAEKLLE
Sbjct: 521 QHFSCMVDLYGRAGFLAKAKDIIHRMPYEPSGATWATLLNACHIHGNTEIGKWAAEKLLE 580

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           ++P  P  Y L++N+YA+   W  +A +R +MRD    K PGC+WI        F   D 
Sbjct: 581 MKPENPGYYVLIANMYATAGSWSKLAEVRTIMRDLGVRKDPGCAWINTDSGFSLFSVGDT 640

Query: 622 SHPQAVHMYAMLCTVFGLMEEN 643
           S+PQA   Y +L  +  LM++ 
Sbjct: 641 SNPQACDTYPLLDGLNQLMKDT 662



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 6/216 (2%)

Query: 247 AIAVFNLMRLE----GMKGDYFTFS--SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           A   F+L+RL+     + GD    S  SL+++C  + +   G QIH   +    +    +
Sbjct: 22  AFKTFSLLRLQSSPSAVSGDVVLHSAASLLSACVDVLAFVPGLQIHAHCVSSGVEYHSAL 81

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
              LV  Y+      +A  + +     + + WN ++  + +N    E V   + M+    
Sbjct: 82  VPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVSKGI 141

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD  T  S+L +CG        R VH     +  +  L + NALI+ Y + G++  A +
Sbjct: 142 RPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYKRFGNVGIARR 201

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
            F  + E D V+W ++I  YA  G+  E+ E+F+KM
Sbjct: 202 LFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKM 237


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/584 (32%), Positives = 311/584 (53%), Gaps = 13/584 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A+  +++    + G  LH+H +  G+ + L + + ++ +Y K    +   K+FD M 
Sbjct: 116 YAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFR---RMLLD----NVRLDHITFNSLLRACVQADDI 178
            R+ V WNT+ISG      +   YF    R+ +D     +  D  T  ++L A  +  + 
Sbjct: 176 ERDTVLWNTMISGF-----SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G  +     K G   + +V + L+ LY KCG     R +FD++   DL+ +N M+S Y
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
             N   + A+ +F  +   G + +  T   L+         +L R I  L +K    L  
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V+T+L  +Y +   +  A ++FD    K++ SWN M+ G+ QNG    A+ L ++M+  
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP- 409

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              P+ VT+ SILS+C  L      + VH       +++ + +  AL++ Y+KCGSI  A
Sbjct: 410 QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            Q F  + + ++VTW ++I  Y  HG  KE++++F +ML   + P  + FL +L ACSH 
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GLVSEG   F+ M ++Y   P SEHY C+ D+LGR G L  A + +  MP+EP     GA
Sbjct: 530 GLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGA 589

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +GAC +H +  +A  A+++L +L+P     Y L+SN+Y+++R +   A +R++++    
Sbjct: 590 LLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKL 649

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            K PGC+ IEI  + + F S DRSHPQA  ++ ML  + G M E
Sbjct: 650 AKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMRE 693



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 239/505 (47%), Gaps = 11/505 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q  Q+ + ++  G+   LS   ++ H +    A   + +LF+++   ++  +N LI G
Sbjct: 27  LSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRG 86

Query: 139 IINCGGNVTPYFRRMLL---DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
             + G   +  F    L    N+R D+ T+   + A  + +D  VG  LH+  +  G   
Sbjct: 87  FSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVAS 146

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N FV SA+VDLY K    E AR+VFD +  RD VLWN M+S ++ N   + +I VF  M 
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDML 206

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G+  D  T ++++ +   L   +LG  I  L  K+    DV V T L+ +Y+K G   
Sbjct: 207 DVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSC 266

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
               +FD +   +++S+N M+ G+  N +   AV L R++L      +  TL  ++    
Sbjct: 267 KGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYL 326

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
             +    +R +   ++K G+    S+  AL   Y +   +  A Q F    E  L +W +
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  Y  +GL+  +I +F++M+   + P+ +    +LSAC+  G +S G ++ + +I   
Sbjct: 387 MISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSE 444

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            +  +    T L D+  + G +VEA  L   M ++    T  A I    +HG     K A
Sbjct: 445 RLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGH---GKEA 500

Query: 556 AEKLLELEPS--KPVNYALVSNVYA 578
            +   E+  S   P     +S +YA
Sbjct: 501 LKLFYEMLQSGIPPTGVTFLSILYA 525


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 317/563 (56%), Gaps = 9/563 (1%)

Query: 79  LQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L++G+++H+H+++ G +  K+++ N ++++Y KC A D   ++F  M  R+ ++WNT+I+
Sbjct: 398 LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIIT 457

Query: 138 GIINCGGNVTPYFRRMLLDNVRLDHITFNSL--LRACVQADDIEVGRRLHSFILKVGFGL 195
            +   G          L+    +    F ++  L +C     +  G++LH   +K G  L
Sbjct: 458 ALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYL 517

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG-DGAIAVFNLM 254
           +  VS+ALV +YG+CG + +   +F+ +   D+V WN ++   A +      ++ VF+ M
Sbjct: 518 DTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNM 577

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  +  TF + + +   L   +LG+QIH +++K     D  V  +L+  YAK+G++
Sbjct: 578 MKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDV 637

Query: 315 DDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           D   R+F  M+ + + +SWN+M+ G+  NG  +EA+  +  M+      D  T + +L++
Sbjct: 638 DSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNA 697

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S++      ++HA+ +++ +++ + +E+AL++ YSKCG I  A + F S+ + +  +W
Sbjct: 698 CASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSW 757

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            S+I  YA HGL ++++E+FE+M      PD + F+ VLSACSH GLV  GL YF LM  
Sbjct: 758 NSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-E 816

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC---KVHGSIG 550
           DY ILP  EHY+C+ DLLGR G L +  + +  MP++P +      + AC   K    I 
Sbjct: 817 DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKID 876

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           L   A+  LLELEP  PVNY L S  +A+   W D A+ R  M+     K  G SW+ + 
Sbjct: 877 LGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLT 936

Query: 611 GEIHTFVSSDRSHPQAVHMYAML 633
             +HTF++ DRSHP    +Y  L
Sbjct: 937 DGVHTFIAGDRSHPNTKEIYEKL 959



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 232/467 (49%), Gaps = 28/467 (5%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           + LH  ++K GL + L L N +++ Y K    D   ++FD M  RN V+W  LISG +  
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 143 G--GNVTPYFRRMLLD--NVRLDHITFNSLLRACVQA--DDIEVGRRLHSFILKVGFGLN 196
           G   +  P FR ML +    R    TF S+LRAC  +  D +    ++H  + K  F  N
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 197 CFVSSALVDLYGKCGFVED--ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
             V +AL+ +YG C       A+RVFD    RDL+ WN ++S YA    GD AI  F L 
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKR--GD-AICTFTLF 261

Query: 255 RLEG-------MKGDYFTFSSLVNSCGTLGSSKLG--RQIHGLVIKQSFDLDVLVATSLV 305
           R          ++    TF SL+ +   L S  LG   Q+   V+K     D+ V ++LV
Sbjct: 262 RAMQYDDSGIELRPTEHTFGSLITAT-YLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALV 320

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
             +A++G +D+A  ++ G+  +N V+ N ++ G  +   G  A ++     + S   +  
Sbjct: 321 SAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGA-RDSAAVNVD 379

Query: 366 TLASILSSCGSLSISCE----TRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQ 420
           T   +LS+    S + +     R+VHA+ ++ G +   +++ N L+N Y+KCG+I  A +
Sbjct: 380 TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACR 439

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  ++  D ++W +II A   +G  + ++  +  M  +++ P + A +  LS+C+  GL
Sbjct: 440 VFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGL 499

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           ++ G +  +     + +  D+     L  + G  G + E +++  SM
Sbjct: 500 LAAG-QQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSM 545



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H  V+K+    D+ +A  LV+ YAK   +D A RVFDGM  +N VSW  ++ G   +G 
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 345 GREAVKLLRDML-QGSFC-PDEVTLASILSSCGSLSISCETR-----QVHAYAIKNGVQA 397
             +A  L R ML +G  C P   T  S+L +C     S   R     QVH    K    +
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQD---SGPDRLGFAVQVHGLVSKTEFTS 203

Query: 398 FLSIENALINAYSKC--GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             ++ NALI+ Y  C  G    A + F +    DL+TW +++  YA  G +  +  +F  
Sbjct: 204 NTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRA 263

Query: 456 MLSH----AVRPDSIAFLEV-----LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
           M        +RP    F  +     LS+CS G L    +R      S      D    + 
Sbjct: 264 MQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSS-----DLYVGSA 318

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC--KVHGSIGLAKWAAEKLLELEP 564
           L     R G+L EA D+   +  E  + TL   I     + HG     + AAE  +    
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLK-ERNAVTLNGLIAGLVKQQHG-----EAAAEIFMGARD 372

Query: 565 SKPVN 569
           S  VN
Sbjct: 373 SAAVN 377



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 8/189 (4%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +H      H  +S  L   A    L++G ++H+  ++  L + + +++ ++ +Y KC   
Sbjct: 680 MHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRI 739

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D   K+F  M  +N  +WN++ISG      G      F  M       DH+TF S+L AC
Sbjct: 740 DYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSAC 799

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLV 229
             A  +E G  L  F L   +G+   +   S ++DL G+ G ++  +     +  + + +
Sbjct: 800 SHAGLVERG--LDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTL 857

Query: 230 LW-NVMVSC 237
           +W  V+V+C
Sbjct: 858 IWRTVLVAC 866


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/485 (36%), Positives = 285/485 (58%), Gaps = 6/485 (1%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD+ + N  + A  +   ++VG + H+  LK+    + FV +AL+++Y  C +   AR V
Sbjct: 3   LDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLV 62

Query: 220 FDEV--LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
            D       D+V WN +++ Y    + + A+  F+ M  E ++ D  T  +++ +C   G
Sbjct: 63  LDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTG 122

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           + K+G   H LV+   F+++  + +SLV MYAK G +++A RVF+ M  +NVV W +M+ 
Sbjct: 123 AMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIA 182

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G  Q+G  +EAV L RDM       D+ T+A+++SSCG +      R +HAY   +G+  
Sbjct: 183 GCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGK 242

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            LS++N+LI+ YSKCG +  A Q F  + + D+ TWT +I  +A +GL  E++++F +M 
Sbjct: 243 ELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQME 302

Query: 458 SH-AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
               V P+ + FL VL+ACSHGGLV +G  +F+ M   Y+++P  EHY C+ DLLGR  L
Sbjct: 303 GEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKL 362

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           L EA   +  MP+ P      + + AC+  G +GLA++AAE++ +LEP +   + L+SNV
Sbjct: 363 LAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNV 422

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           YA+   W DV  +R  M ++   K PGCS+IE+ G IH F + D SH +     A+  T+
Sbjct: 423 YATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFET---EAICNTL 479

Query: 637 FGLME 641
           FG+ E
Sbjct: 480 FGINE 484



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 209/399 (52%), Gaps = 12/399 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--V 126
           A+  +A+   L  G Q H+  +KL L +   + N ++++Y  C        + D      
Sbjct: 11  AISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWA 70

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++V+WNT+I+G I  G        F +M  + VRLD +T  ++L AC +   ++VG   
Sbjct: 71  SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 130

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++  GF +NC++ S+LV +Y KCG VE+ARRVF+ +  R++V W  M++    +   
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRF 190

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M++ G+K D  T +++V+SCG +G+  LGR +H          ++ V  SL
Sbjct: 191 KEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSL 250

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPD 363
           +DMY+K G+++ A ++F G+T ++V +W  M++GF  NG   EA+ L   M  +    P+
Sbjct: 251 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQC 421
           EV    +L++C    +  E    H + +         IE+   +++   +   +A A Q 
Sbjct: 311 EVIFLGVLTACSHGGL-VEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQF 369

Query: 422 FGSVK-EPDLVTWTSII---GAYAFHGLSKESIEVFEKM 456
              +   PD+V W S++    A    GL++ + E  E++
Sbjct: 370 IKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQL 408


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 297/549 (54%), Gaps = 2/549 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +GK LH+ ++     + + L N ++  Y KC        +FD M  RN V+ N L+
Sbjct: 25  GDLSKGKALHARLITAAHFD-VVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLM 83

Query: 137 SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           SG  + G +     + + + +  ++    ++ + A       ++GR+ H + +K GF   
Sbjct: 84  SGYASSGRH-KESLQLLRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQ 142

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +V +A++ +Y +C  +EDA +VF+ V   D   +N M++ Y      DG++ +   M  
Sbjct: 143 RYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTG 202

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E  K DY ++ +++  C ++  S LG Q+H   +K+  +L+V V ++LVDMY K  ++ D
Sbjct: 203 EAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHD 262

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A R F+ +  KNVVSW  ++  + QN    +A++L  DM      P+E T A  L+SC  
Sbjct: 263 ANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAG 322

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+       + A  +K G    L + NAL+N YSK GSI  A + F S+   D+V+W  I
Sbjct: 323 LAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLI 382

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HGL++E +E F  MLS AV P  + F+ VLSAC+  GLV E   Y N M+ +  
Sbjct: 383 ITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVG 442

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHYTC+  LL RVG L EA   + +  I        + + +C+V+ + GL    A
Sbjct: 443 ITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVA 502

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E++L+LEPS    Y L+SN+YA    W  V ++RK MR+    K PG SWI +  ++H F
Sbjct: 503 EQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVF 562

Query: 617 VSSDRSHPQ 625
            S ++ HPQ
Sbjct: 563 TSEEKVHPQ 571



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 177/319 (55%), Gaps = 2/319 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S A+  +A       G+Q H + +K G   +  + N VL++Y +C   +D  K+F+ +  
Sbjct: 112 SAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSG 171

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +   +N++I+G ++ G         R M  +  + D++++ ++L  C    D  +G ++
Sbjct: 172 FDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQV 231

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  LK    LN +V SALVD+YGKC  V DA R F+ +  +++V W  +++ Y  N L 
Sbjct: 232 HAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELY 291

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ +F  M +EG++ + FT++  +NSC  L + + G  +   V+K      +LV+ +L
Sbjct: 292 EDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNAL 351

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           ++MY+K+G+I+DA RVF  M  ++VVSWN ++ G+  +G  RE ++    ML  +  P  
Sbjct: 352 MNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSY 411

Query: 365 VTLASILSSCGSLSISCET 383
           VT   +LS+C  L +  E 
Sbjct: 412 VTFVGVLSACAQLGLVDEA 430



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 43/275 (15%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL   A    L+ G  L + +MK G  + L + N ++++Y K  + +D  ++F  M 
Sbjct: 313 YAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMP 372

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-EVGR 182
           +R++V+WN +I+G  + G        F  ML   V   ++TF  +L AC Q   + E   
Sbjct: 373 LRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFY 432

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            L++ + +VG        + +V L  + G +++A R                      NC
Sbjct: 433 YLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVN------------------NC 474

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           +G   +A                + SL+NSC    +  LG ++   ++ Q    DV    
Sbjct: 475 IGTDVVA----------------WRSLLNSCQVYKNYGLGHRVAEQIL-QLEPSDVGTYV 517

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNV-----VSW 332
            L +MYAK    D   +V   M  + V     VSW
Sbjct: 518 LLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSW 552


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 319/587 (54%), Gaps = 11/587 (1%)

Query: 62  AHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           A SF Y   +K       L++GK++H+ ++KL   + + + N ++ +Y+K     D EK+
Sbjct: 124 ADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKV 183

Query: 121 FDEMRVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           F+EM  R+IV+WN++ISG +    G      F+ ML    + D  +  S L AC      
Sbjct: 184 FEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSP 243

Query: 179 EVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
            +G+ LH   ++      +  V ++++D+Y K G V  A R+F  ++ R++V WNV++ C
Sbjct: 244 NMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGC 303

Query: 238 YALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           YA N     A   F  M  + G++ D  T  +L+ +C  L     GR IHG  +++ F  
Sbjct: 304 YARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAILE----GRTIHGYAMRRGFLP 359

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
            +++ T+L+DMY + G +  A  +FD +  KN++SWN+++  + QNG    A++L + + 
Sbjct: 360 HIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLW 419

Query: 357 QGSFCPDEVTLASILSSCG-SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
             S  PD  T+ASIL +   SLS+S E RQ+HAY +K+   +   I N+L++ Y+ CG +
Sbjct: 420 DSSLLPDSTTIASILPAYAESLSLS-EGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDL 478

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A +CF  V   D+V+W SII AYA HG  + S+ +F +M++  V P+   F  +L+AC
Sbjct: 479 EDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAAC 538

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           S  G+V EG  YF  M  +Y I P  EHY  + DL+GR G    A   +  MP  P +  
Sbjct: 539 SISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARI 598

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
            G+ + A + H  I +A++AAE++ ++E      Y L+ N+YA  R W DV R++ +M  
Sbjct: 599 WGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMES 658

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
               +    S +E   + H   + DRSH +   +Y +L  V  ++ E
Sbjct: 659 KGISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEVLDIVSRMIGE 705



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 243/476 (51%), Gaps = 49/476 (10%)

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +D  +LFDEM   +   WN +I G  +CG        + RM+   V+ D  T+  ++++ 
Sbjct: 77  EDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSV 136

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                +E G+++H+ ++K+ F  + +V ++L+ LY K G   DA +VF+E+  RD+V WN
Sbjct: 137 TGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWN 196

Query: 233 VMVSCYALNCLGDG--AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
            M+S Y    L DG  ++ +F  M   G K D F+  S + +C  + S  +G+++H   +
Sbjct: 197 SMISGYL--ALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAV 254

Query: 291 KQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           +   +  DV+V TS++DMY+K G +  A R+F  +  +N+V+WN ++  + +N    +A 
Sbjct: 255 RSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAF 314

Query: 350 KLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
              + M  Q    PD +TL ++L +C  L    E R +H YA++ G    + ++ ALI+ 
Sbjct: 315 LCFQKMSEQNGLQPDVITLINLLPACAIL----EGRTIHGYAMRRGFLPHIVLDTALIDM 370

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y + G +  A   F  + E +L++W SII AY  +G +  ++E+F+K+   ++ PDS   
Sbjct: 371 YGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTI 430

Query: 469 LEVLSACSHGGLVSEGL---------RY------FNLMISDYHILPDSE------HYTCL 507
             +L A +    +SEG          RY       N ++  Y +  D E      ++  L
Sbjct: 431 ASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLL 490

Query: 508 TDLL--------------GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            D++              GR+ + + + +++AS  ++P   T  + + AC + G +
Sbjct: 491 KDVVSWNSIIMAYAVHGFGRISVCLFS-EMIAS-KVDPNKSTFASLLAACSISGMV 544



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 183/357 (51%), Gaps = 24/357 (6%)

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           +   G +EDA ++FDE+   D  +WNVM+  +    L   A+ ++  M   G+K D FT+
Sbjct: 70  FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTY 129

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
             ++ S   + S + G++IH +VIK  F  DV V  SL+ +Y K G   DA +VF+ M  
Sbjct: 130 PFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPE 189

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           +++VSWN+M+ G+    DG  ++ L ++ML+  F PD  +  S L +C  +      +++
Sbjct: 190 RDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKEL 249

Query: 387 HAYAIKNGVQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           H +A+++ ++   + +  ++++ YSK G ++ A + F  + + ++V W  +IG YA +  
Sbjct: 250 HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSR 309

Query: 446 SKESIEVFEKMLSH-AVRPDSIAFLEVLSACS-------HGGLVSEGLRYFNLMISDYHI 497
             ++   F+KM     ++PD I  + +L AC+       HG  +  G           HI
Sbjct: 310 VTDAFLCFQKMSEQNGLQPDVITLINLLPACAILEGRTIHGYAMRRGFL--------PHI 361

Query: 498 LPDSEHYTCLTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           + D    T L D+ G  G L  A   +D +A   +   +  + A++   K + ++ L
Sbjct: 362 VLD----TALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALEL 414



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +  ++  G +  ALQ F  + + D   W  +I  +   GL  E+++++ +M+   V+ DS
Sbjct: 67  LRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADS 126

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC--LTDLLGRVGLLVEAYDL 523
             +  V+ + +    + EG +   ++I    +   S+ Y C  L  L  ++G   +A  +
Sbjct: 127 FTYPFVIKSVTGISSLEEGKKIHAMVIKLRFV---SDVYVCNSLISLYMKLGCSWDAEKV 183

Query: 524 LASMP 528
              MP
Sbjct: 184 FEEMP 188


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 334/629 (53%), Gaps = 22/629 (3%)

Query: 16  KRPLSYLTPALYQNQTTTITNAQKH---DRSVLSSQLRNSGTIHE-STHSAHSFYSQALK 71
           K  L+       +N  + +T AQ +   D   L S+L   G  HE + H   SF    LK
Sbjct: 101 KDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREG--HELNPHVFTSF----LK 154

Query: 72  VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVT 131
           +       +    LHS I+KLG  +   +   +++ Y  C + D    +F+ +  ++IV 
Sbjct: 155 LFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVV 214

Query: 132 WNTLISGIINCGGNVTPYFRR--MLLDNVRL-----DHITFNSLLRACVQADDIEVGRRL 184
           W  ++S  +  G     YF     LL  +R+     ++ TF++ L+A +     +  + +
Sbjct: 215 WAGIVSCYVENG-----YFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ILK  + L+  V   L+ LY + G + DA +VF+E+   D+V W+ M++ +  N   
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFC 329

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A+ +F  MR   +  + FT SS++N C     S LG Q+HGLV+K  FDLD+ V+ +L
Sbjct: 330 NEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNAL 389

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+YAK   +D A ++F  +++KN VSWNT++VG+   G+G +A  + R+ L+      E
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTE 449

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           VT +S L +C SL+      QVH  AIK      +++ N+LI+ Y+KCG I  A   F  
Sbjct: 450 VTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNE 509

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++  D+ +W ++I  Y+ HGL ++++ + + M     +P+ + FL VLS CS+ GL+ +G
Sbjct: 510 METIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQG 569

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
              F  MI D+ I P  EHYTC+  LLGR G L +A  L+  +P EP      A + A  
Sbjct: 570 QECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASM 629

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
              +   A+ +AE++L++ P     Y LVSN+YA  + W +VA +RK M++    K PG 
Sbjct: 630 NQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGL 689

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SWIE  G++H F      HP    +  ML
Sbjct: 690 SWIEHQGDVHYFSVGLSDHPDMKLINGML 718



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/411 (32%), Positives = 214/411 (52%), Gaps = 2/411 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            K +H  I+K G C  L   N +L+ YVK     D   LFDEM  RN V++ TL  G   
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA- 126

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
           C   +  Y  R+  +   L+   F S L+  V  D  E+   LHS I+K+G+  N FV +
Sbjct: 127 CQDPIGLY-SRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGA 185

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL++ Y  CG V+ AR VF+ +LC+D+V+W  +VSCY  N   + ++ + + MR+ G   
Sbjct: 186 ALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMP 245

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           + +TF + + +   LG+    + +HG ++K  + LD  V   L+ +Y + G++ DA +VF
Sbjct: 246 NNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVF 305

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           + M   +VV W+ M+  F QNG   EAV L   M +    P+E TL+SIL+ C     S 
Sbjct: 306 NEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSG 365

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H   +K G    + + NALI+ Y+KC  +  A++ F  +   + V+W ++I  Y 
Sbjct: 366 LGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYE 425

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             G   ++  +F + L + V    + F   L AC+    +  G++   L I
Sbjct: 426 NLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAI 476



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 166/333 (49%), Gaps = 4/333 (1%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           LD   + ++LR C+Q +D    + +H  ILK G  L+ F ++ L++ Y K GF +DA  +
Sbjct: 47  LDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FDE+  R+ V +  +   YA        I +++ +  EG + +   F+S +    +L  +
Sbjct: 107 FDEMPERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKA 162

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           ++   +H  ++K  +D +  V  +L++ Y+  G++D A  VF+G+  K++V W  +V  +
Sbjct: 163 EICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCY 222

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            +NG   +++KLL  M    F P+  T  + L +   L      + VH   +K       
Sbjct: 223 VENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP 282

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +   L+  Y++ G ++ A + F  + + D+V W+ +I  +  +G   E++++F +M   
Sbjct: 283 RVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREA 342

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            V P+      +L+ C+ G     G +   L++
Sbjct: 343 FVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 305/564 (54%), Gaps = 3/564 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+++H+H+++ G   ++ + N ++ +Y KC       K+FD M V + ++WN +I+G 
Sbjct: 212 RMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGH 271

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G        F  ML D V+ + +T  S+  A     DI   + +H   +K GF  + 
Sbjct: 272 FENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDV 331

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
              ++L+ +Y   G +  AR VF  +  RD + W  M+S Y  N   D A+ V+ LM + 
Sbjct: 332 AFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVN 391

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  D  T +S + +C  LGS  +G ++H L   + F   V+V  +L++MYAK+  ID A
Sbjct: 392 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKA 451

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             VF  M  K+VVSW++M+ GF  N    EA+   R ML     P+ VT  + L++C + 
Sbjct: 452 IEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAAT 510

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 +++HA+ ++ G+     + NALI+ Y KCG    A   F +    D+V+W  +I
Sbjct: 511 GALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 570

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             +  HG  + ++  F +M+     PD + F+ +L ACS GG+VSEG   F+ M   Y I
Sbjct: 571 AGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSI 630

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
           +P+ +HY C+ DLL RVG L EAY+ +  MPI P +   GA +  C++H  + L + AA+
Sbjct: 631 VPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAK 690

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            +LELEP+    + L+ ++YA    W  +AR+RK MR+       GCSW+E+ G +H F+
Sbjct: 691 YVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFL 750

Query: 618 SSDRSHPQAVHMYAMLCTVFGLME 641
           + D SHPQ   +  +L  ++  M+
Sbjct: 751 TDDESHPQIREINTVLEGIYERMK 774



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 198/377 (52%), Gaps = 9/377 (2%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           L L N +L + V+        ++F +M  R++ +WN ++ G    G        + RM+ 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             VR D  TF  +LR+C    D  +GR +H+ +L+ GF     V +AL+ +Y KCG V  
Sbjct: 189 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVA 248

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D + WN M++ +  N   +  + +F  M  + ++ +  T +S+  + G 
Sbjct: 249 ARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGL 308

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L      +++HGL +K+ F  DV    SL+ MYA  G +  A  VF  M  ++ +SW  M
Sbjct: 309 LSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAM 368

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL---ASILSSCGSLSISCETRQVHAYAIK 392
           + G+ +NG   +A+++   M   +  PD++T+    +  +  GSL +     ++H  A  
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGV---KLHELAES 425

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G  +++ + NAL+  Y+K   I  A++ F  + E D+V+W+S+I  + F+  + E++  
Sbjct: 426 KGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYY 485

Query: 453 FEKMLSHAVRPDSIAFL 469
           F  ML+  V+P+S+ F+
Sbjct: 486 FRHMLAD-VKPNSVTFI 501



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 170/322 (52%), Gaps = 13/322 (4%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           LRAC  ADD     R   F L++G        +A++ +  + G    A RVF ++  RD+
Sbjct: 114 LRACAHADD-----RHAWFGLRLG--------NAMLSMLVRFGETWHAWRVFAKMPERDV 160

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
             WNVMV  Y    L + A+ +++ M   G++ D +TF  ++ SCG +   ++GR++H  
Sbjct: 161 FSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAH 220

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V++  F  +V V  +L+ MYAK G++  A +VFD M   + +SWN M+ G  +NG+    
Sbjct: 221 VLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAG 280

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++L   MLQ    P+ +T+ S+  + G LS     +++H  A+K G    ++  N+LI  
Sbjct: 281 LELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQM 340

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+  G +  A   F  +   D ++WT++I  Y  +G   +++EV+  M  + V PD I  
Sbjct: 341 YASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITI 400

Query: 469 LEVLSACSHGGLVSEGLRYFNL 490
              L+AC+  G +  G++   L
Sbjct: 401 ASALAACACLGSLDVGVKLHEL 422



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 5/266 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G +LH      G  + + + N +L +Y K K  D   ++F  M  +++V+W+++I
Sbjct: 411 GSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMI 470

Query: 137 SGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +G      N     YFR ML D V+ + +TF + L AC     +  G+ +H+ +L+ G  
Sbjct: 471 AGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIA 529

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
              ++ +AL+DLY KCG    A   F     +D+V WN+M++ +  +  G+ A++ FN M
Sbjct: 530 YEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQM 589

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGN 313
              G   D  TF +L+ +C   G    G ++ H +  K S   ++     +VD+ ++ G 
Sbjct: 590 VKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQ 649

Query: 314 IDDACRVFDGMT-AKNVVSWNTMVVG 338
           + +A    + M    +   W  ++ G
Sbjct: 650 LTEAYNFINEMPITPDAAVWGALLNG 675


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 173/516 (33%), Positives = 295/516 (57%), Gaps = 5/516 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           +F+++      T N++I G  N         +++ M+L  +  D  TF SL ++C    +
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE 155

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
              G++LH    K+GF  + ++ + L+++Y  CG +  AR+VFD+++ + +V W  M+  
Sbjct: 156 ---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 212

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           YA   L   AI +F  M +  +K +  T  +++ +C      +  +Q+H  + +      
Sbjct: 213 YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH 272

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
            ++ ++L+D+Y K G    A  +F+ M  KN+  WN M+ G  ++ D  EA+ L  +M  
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL 332

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
                D+VT+AS+L +C  L      + +H Y  K  ++  +++  AL++ Y+KCGSI  
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 392

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A++ F  + E D++TWT++I   A  G   +++E+F +M    V+PD+I F+ VL+ACSH
Sbjct: 393 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 452

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            GLV+EG+ YFN M + Y I P  EHY C+ D+LGR G + EA DL+ +MP+ P    L 
Sbjct: 453 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 512

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             + AC++HG++ +A+ AA++L+EL+P     Y L+SN+Y+S + W    ++R++M +  
Sbjct: 513 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 572

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             K PGCS IE+ G +H FV  D SHPQ+  +Y  L
Sbjct: 573 IKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETL 608



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 210/372 (56%), Gaps = 4/372 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L +GKQLH H  KLG  +   +QN ++++Y  C       K+FD+M  +++V+W T+I
Sbjct: 151 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210

Query: 137 SGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
                 +        FRRM + +V+ + IT  ++L AC ++ D+E  +++H +I + G G
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +  ++SAL+D+Y KCG    AR +F+++  ++L  WN+M++ +  +   + A+++FN M
Sbjct: 271 FHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM 330

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           +L G+KGD  T +SL+ +C  LG+ +LG+ +H  + K+  ++DV + T+LVDMYAK G+I
Sbjct: 331 QLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSI 390

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A RVF  M  K+V++W  ++VG    G G +A++L  +M      PD +T   +L++C
Sbjct: 391 ESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAAC 450

Query: 375 GSLSISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVT 432
               +  E     ++   K G+Q  +     +++   + G IA A     ++   PD   
Sbjct: 451 SHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFV 510

Query: 433 WTSIIGAYAFHG 444
              ++ A   HG
Sbjct: 511 LVGLLSACRIHG 522



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 170/349 (48%), Gaps = 6/349 (1%)

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYG--KCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           +++H+ +L+    ++ F +S +V        G +  AR VF+++        N ++  Y 
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
              L   AI  + LM L+G+  D FTF SL  SCG L     G+Q+H    K  F  D  
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAY 173

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           +  +L++MY+  G +  A +VFD M  K+VVSW TM+  + Q     EA+KL R M   S
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 233

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E+TL ++L++C         +QVH Y  + G+     + +AL++ Y KCG    A 
Sbjct: 234 VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLAR 293

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  + E +L  W  +I  +      +E++ +F +M    V+ D +    +L AC+H G
Sbjct: 294 DLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLG 353

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            +  G ++ ++ I    I  D    T L D+  + G +  A  +   MP
Sbjct: 354 ALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP 401



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 140/307 (45%), Gaps = 35/307 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+   L+  KQ+H +I + G+     L + ++ VY KC  +     LF++M  +N+
Sbjct: 245 LTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNL 304

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
             WN +I+G +           F  M L  V+ D +T  SLL AC     +E+G+ LH +
Sbjct: 305 FCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVY 364

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I K    ++  + +ALVD+Y KCG +E A RVF E+  +D++ W  ++   A+   G  A
Sbjct: 365 IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKA 424

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F+ M++  +K D  TF  ++ +C   G    G               +    S+ + 
Sbjct: 425 LELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG---------------IAYFNSMPNK 469

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y    +I+                +  MV   G+ G   EA  L+++M      PD   L
Sbjct: 470 YGIQPSIE---------------HYGCMVDMLGRAGRIAEAEDLIQNM---PMAPDYFVL 511

Query: 368 ASILSSC 374
             +LS+C
Sbjct: 512 VGLLSAC 518


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 308/568 (54%), Gaps = 5/568 (0%)

Query: 71   KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
            K  A+  ++   + +H+H++K    + + +    + ++VKC + D   K+F+ M VR+  
Sbjct: 656  KACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDAT 715

Query: 131  TWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
            TWN ++SG    G    V   FR M LD +  D +T  +L+++      +++ + +H+F 
Sbjct: 716  TWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFG 775

Query: 189  LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDG 246
            +++G  L   VS+  +  YGKCG ++ A+ VF+ +    R +V WN +   +A+      
Sbjct: 776  IRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFD 835

Query: 247  AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
            A   + LM  +  K D  TF +L  SC    +   GR IH   I    D D+    + + 
Sbjct: 836  AFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFIS 895

Query: 307  MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            MY+K+G+   A  +FD M ++  VSW  M+ G+ + GD  EA+ L   M +    PD VT
Sbjct: 896  MYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVT 955

Query: 367  LASILSSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSV 425
            L S++S CG        + +   A   G +   + + NALI+ YSKCGSI  A   F + 
Sbjct: 956  LLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNT 1015

Query: 426  KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
             E  +VTWT++I  YA +G+  E++E+F KM+    +P+ I FL VL AC+H G + +G 
Sbjct: 1016 SEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 1075

Query: 486  RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
             YF++M   Y+I P  +HY+C+ DLLGR G L EA +L+ +M  +P +   GA + ACK+
Sbjct: 1076 EYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKI 1135

Query: 546  HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
            H ++ +A+ AA+ L  LEP     Y  +SN+YA+   W   AR+R MM+     K PG S
Sbjct: 1136 HRNVKIAEQAADSLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGES 1195

Query: 606  WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             I++ G+ HTF   +R H +   +Y+ L
Sbjct: 1196 VIQVNGKNHTFTVGERGHMENEAIYSTL 1223



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 186/402 (46%), Gaps = 6/402 (1%)

Query: 128  NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            ++  WN  +   +N    V     FR M       ++ TF  + +AC +   I     +H
Sbjct: 612  SVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVH 671

Query: 186  SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            + ++K  F  + FV +A VD++ KC  ++ A +VF+ +  RD   WN M+S +  +   D
Sbjct: 672  THLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTD 731

Query: 246  GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
               ++F  MRL+ +  D  T  +L+ S     S KL + +H   I+   DL   V+ + +
Sbjct: 732  KVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWI 791

Query: 306  DMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
              Y K G++D A  VF+ +    + VVSWN++   F   G+  +A    R ML+  F PD
Sbjct: 792  SAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPD 851

Query: 364  EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
              T  ++ +SC +     + R +H++AI  G    +   N  I+ YSK G    A   F 
Sbjct: 852  LSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFD 911

Query: 424  SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             +     V+WT +I  YA  G   E++ +F  M    V PD +  L ++S C   G +  
Sbjct: 912  IMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEI 971

Query: 484  GLRYFNLMISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLL 524
            G ++ +     Y    D+      L D+  + G + EA D+ 
Sbjct: 972  G-KWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIF 1012


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 164/574 (28%), Positives = 324/574 (56%), Gaps = 10/574 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK +H+  +  GL N + L N +  +Y  C    +  ++FD     + V+WN+L+SG
Sbjct: 119 LRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSG 178

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI--EVGRRLHSFILKVGFG 194
            +  G        F  M    +  +     S+++ C    D+   +   +H  ++K G  
Sbjct: 179 YVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLD 238

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG------AI 248
            + F++SA++D+Y K G + +A  +F  V   +++++N M++ +  +    G      A+
Sbjct: 239 ADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREAL 298

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           ++++ M+  GM+   FTFSS++ +C   G    G+QIHG V+K SF  D  + ++L+D+Y
Sbjct: 299 SLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLY 358

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           + +G ++D  R F  +  +++V+W +M+ G  QN    +A++L ++ +     PD  T++
Sbjct: 359 SDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMS 418

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S++++C SL+++    Q+   AIK G   F ++ N+ I+  ++ G +    + F  ++  
Sbjct: 419 SVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESR 478

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D+V+W+++I ++A HG +++++ +F +M++  V P+ + FL VL+ACSHGGLV +GLRY+
Sbjct: 479 DVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYY 538

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            +M ++Y + P  +H TC+ DLLGR G L +A   +        +    + + +C++HG 
Sbjct: 539 EIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGD 598

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           +   +  A+++++LEP+   +Y ++ N+Y         ++ R +M++    K PG SWIE
Sbjct: 599 MERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIE 658

Query: 609 IAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           +   +H+FV+ D+SHP++  +Y  L  +   +E+
Sbjct: 659 LRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEK 692



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 209/407 (51%), Gaps = 17/407 (4%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME--KLFDEMRVRNIVTWNTLISGIINC 142
           +H+HI +      L L+N +L  Y +      +   +L DEM  RN V++N LIS     
Sbjct: 21  VHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRA 80

Query: 143 G--GNVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           G  G     F R      +R+D  T+ + L AC +A D+  G+ +H+  +  G G   F+
Sbjct: 81  GLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFL 140

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           S++L  +Y  CG + +ARRVFD     D V WN ++S Y      +  + VF+LM   G+
Sbjct: 141 SNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGL 200

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQI----HGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             + F   S++  C +   S +GR I    HG V+K   D D+ +A++++DMYAK G + 
Sbjct: 201 GWNSFALGSIIKCCAS--GSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALT 258

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDG------REAVKLLRDMLQGSFCPDEVTLAS 369
           +A  +F  +   NV+ +N M+ GF ++         REA+ L  +M      P E T +S
Sbjct: 259 NAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSS 318

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           IL +C         +Q+H   +K+       I +ALI+ YS  G +    +CF S+ + D
Sbjct: 319 ILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQD 378

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +VTWTS+I     + L ++++ +F++ + + ++PD      V++AC+
Sbjct: 379 IVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACA 425


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 316/566 (55%), Gaps = 5/566 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+++H H+++ G    + + N ++ +YVKC        LFD M  R+I++WN +ISG
Sbjct: 212 LARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISG 271

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                 G      F  M   +V  D +T  S++ AC    D  +GR +H++++  GF ++
Sbjct: 272 YFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVD 331

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++L  +Y   G   +A ++F  + C+D+V W  M+S Y  N L + AI  + +M  
Sbjct: 332 ISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQ 391

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           + +K D  T ++++++C TLG    G ++H L IK      V+VA +L++MY+K   ID 
Sbjct: 392 DSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDK 451

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F  +  KNV+SW +++ G   N    EA+   R M + +  P+ +TL + L++C  
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPNAITLTAALAACAR 510

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +      +++HA+ ++ GV     + NAL++ Y +CG +  A   F S K+ D+ +W  +
Sbjct: 511 IGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQKK-DVSSWNIL 569

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           +  Y+  G     +E+F++M+   VRPD I F+ +L  C    +V +GL YF+ M  +Y 
Sbjct: 570 LTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKM-EEYG 628

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           + P+ +HY C+ DLLGR G L EA+  +  MP+ P     GA + AC++H +I L + +A
Sbjct: 629 VTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSA 688

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +++ EL+      Y L+ N+YA    W +VA++R+MM++N      GCSW+E+ G++H F
Sbjct: 689 QRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAF 748

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEE 642
           +S D+ HPQ   +  +L   +  M E
Sbjct: 749 LSDDKYHPQTKEINTVLDGFYEKMSE 774



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 210/382 (54%), Gaps = 7/382 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQ--NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           ++G +++S  + L   N LS++  N  L ++V+     D   +F +M  RN+ +WN L+ 
Sbjct: 111 EEGSKVYS--VALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVG 168

Query: 138 GIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G    G     +  Y R + +  V+ D  TF  +LR C    D+  GR +H  +++ G+ 
Sbjct: 169 GYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYE 228

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           L+  V +AL+ +Y KCG V+ AR +FD +  RD++ WN M+S Y  N +G   + +F  M
Sbjct: 229 LDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAM 288

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           R   +  D  T +S++++C  LG  +LGR IH  VI   F +D+ V  SL  MY   G+ 
Sbjct: 289 RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSW 348

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            +A ++F  M  K++VSW TM+ G+  N    +A+   R M Q S  PDE+T+A++LS+C
Sbjct: 349 REAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSAC 408

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            +L       ++H  AIK  + +++ + N LIN YSKC  I  AL  F ++   ++++WT
Sbjct: 409 ATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWT 468

Query: 435 SIIGAYAFHGLSKESIEVFEKM 456
           SII     +    E++  F +M
Sbjct: 469 SIIAGLRLNNRCFEALIFFRQM 490



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 201/376 (53%), Gaps = 10/376 (2%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V +D   F +L+R C      E G +++S  L     L+  + +A + ++ + G + DA 
Sbjct: 90  VAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAW 149

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTL 276
            VF ++  R+L  WNV+V  YA     D AI +++ ++ + G+K D +TF  ++ +CG +
Sbjct: 150 YVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGI 209

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                GR++H  V++  ++LD+ V  +L+ MY K G++  A  +FD M  ++++SWN M+
Sbjct: 210 PDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMI 269

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ +NG G E +KL   M   S  PD +TL S++S+C  L      R +HAY I  G  
Sbjct: 270 SGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFA 329

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             +S+ N+L   Y   GS   A + F  +   D+V+WT++I  Y ++ L +++I+ +  M
Sbjct: 330 VDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMM 389

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS----DYHILPDSEHYTCLTDLLG 512
              +V+PD I    VLSAC+  G +  G+    L I      Y I+ ++     L ++  
Sbjct: 390 DQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN-----LINMYS 444

Query: 513 RVGLLVEAYDLLASMP 528
           +   + +A D+  ++P
Sbjct: 445 KCKCIDKALDIFHNIP 460



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 1/231 (0%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ + N M+   +  D   F +LV  C    + + G +++ + +     L V +  + + 
Sbjct: 78  AMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLA 137

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEV 365
           M+ + GN+ DA  VF  M+ +N+ SWN +V G+ + G   EA+ L   ML  G   PD  
Sbjct: 138 MFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVY 197

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T   +L +CG +      R+VH + ++ G +  + + NALI  Y KCG +  A   F  +
Sbjct: 198 TFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
              D+++W ++I  Y  +G+  E +++F  M   +V PD +    V+SAC 
Sbjct: 258 PRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACE 308



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 172/379 (45%), Gaps = 44/379 (11%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A  G L  G +LH   +K  L + + + N ++++Y KCK  D    +F  +  
Sbjct: 402 AAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPR 461

Query: 127 RNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +N+++W ++I+G+   N       +FR+M +  ++ + IT  + L AC +   +  G+ +
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEALIFFRQMKM-TLQPNAITLTAALAACARIGALMCGKEI 520

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ +L+ G GL+ F+ +AL+D+Y +CG +  A   F+    +D+  WN++++ Y+    G
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQG 579

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
              + +F+ M    ++ D  TF SL+  C   G S++ RQ              L+  S 
Sbjct: 580 SVVVELFDRMVKARVRPDEITFISLLCGC---GKSQMVRQ-------------GLMYFSK 623

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           ++ Y    N+     V D +               G+ G+ +EA K ++ M      PD 
Sbjct: 624 MEEYGVTPNLKHYACVVDLL---------------GRAGELQEAHKFIQKM---PVTPDP 665

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
               ++L++C  +  + +  ++ A  I    +  +     L N Y+ CG      +    
Sbjct: 666 AVWGALLNAC-RIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRM 724

Query: 425 VKEPDLV-----TWTSIIG 438
           +KE  L      +W  + G
Sbjct: 725 MKENGLTVDAGCSWVEVKG 743



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 2/192 (1%)

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G   NG   EA+KLL  M +     DE    +++  C       E  +V++ A+ +    
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSL 127

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + + NA +  + + G++  A   FG + E +L +W  ++G YA  G   E+I ++ +ML
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187

Query: 458 -SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
               V+PD   F  VL  C     ++ G R  ++ +  Y    D +    L  +  + G 
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARG-REVHVHVVRYGYELDIDVVNALITMYVKCGD 246

Query: 517 LVEAYDLLASMP 528
           +  A  L   MP
Sbjct: 247 VKSARLLFDRMP 258


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 202/673 (30%), Positives = 344/673 (51%), Gaps = 71/673 (10%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +   T   H     ALK   +    + G   H  I   G  + + + N ++ +Y +  + 
Sbjct: 141 LRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSL 200

Query: 115 DDMEKLFDEMR---VRNIVTWNTLISGIINCGGNVTPY--FRRMLL------DNVRLDHI 163
           +D   +FDE+    + ++++WN++++  +      T    F  M         N R D I
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDII 260

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           +  ++L AC     +   + +HS+ ++ G   + FV +AL+D Y KCG ++DA  VF+ +
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS---------------- 267
             +D+V WN MV+ Y  +     A  +F  MR E +  D  T+S                
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 268 -------------------SLVNSCGTLGSSKLGRQIHGLVIKQSF------------DL 296
                              SL+++C +LG+   G + H   +K+                
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMT--AKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D++V  +L+DMY+K  +   A  +F+ +    +NVV+W  M+ G+ Q GD  +A+KL  +
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSE 500

Query: 355 MLQGSFC--PDEVTLASILSSCGSLSISCETRQVHAYAIKNGV--QAFLSIENALINAYS 410
           M+   +   P+  T++ IL +C  LS     +Q+HAY  ++     +   + N LI+ YS
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  A   F S+ + + V+WTS++  Y  HG  KE++++F+KM      PD I+FL 
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +L ACSH G+V +GL YF++M SDY ++  ++HY C+ DLL R G L +A+  +  MP+E
Sbjct: 621 LLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPME 680

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P +    A + AC+VH ++ LA++A  KL+ ++     +Y L+SN+YA+ R W DVAR+R
Sbjct: 681 PSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIR 740

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML------CTVFGLMEENN 644
           ++M+ +   K PGCSW++      +F   DRSHP +  +Y++L        V G + E N
Sbjct: 741 QLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETN 800

Query: 645 VSGHCNVLDKEMD 657
            + H +V D+E +
Sbjct: 801 FALH-DVDDEEKN 812



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 231/494 (46%), Gaps = 65/494 (13%)

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
           SL   V+  Y+ C A  D   + + +     V WN L+   I  G          RML  
Sbjct: 84  SLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRA 143

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
             + DH T    L+AC +      G   H  I   GF  N FV +ALV +Y + G +EDA
Sbjct: 144 GTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203

Query: 217 RRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLM------RLEGMKGDYFTFS 267
             VFDE+  +   D++ WN +V+ +        A+ +F+ M      +    + D  +  
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIV 263

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           +++ +C +L +    ++IH   I+     D  V  +L+D YAK G++ DA  VF+ M  K
Sbjct: 264 NILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 328 NVVSWNTMVVGFGQNGD-----------------------------------GREAVKLL 352
           +VVSWN MV G+ Q+G                                    G+EA+   
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF------------LS 400
           + M+     P+ VT+ S+LS+C SL    +  + HAY++K  + +             L 
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLV 443

Query: 401 IENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + NALI+ YSKC S   A   F S+  +E ++VTWT +IG YA +G S +++++F +M+S
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503

Query: 459 --HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGRV 514
             +AV P++     +L AC+H   +  G +  +  ++ +H    S ++   CL D+  + 
Sbjct: 504 KPYAVAPNAYTISCILMACAHLSSLRMG-KQIHAYVTRHHEYESSVYFVANCLIDMYSKC 562

Query: 515 GLLVEAYDLLASMP 528
           G +  A ++  SMP
Sbjct: 563 GDVDTARNVFDSMP 576



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 187/388 (48%), Gaps = 71/388 (18%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL--------------------- 203
           F SLL+ C   + +   R++H  I  + +GL  + +S L                     
Sbjct: 34  FASLLKECRSVNTV---RQIHQKI--IAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTG 88

Query: 204 -VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
            V  Y  CG   DA  V + V+    V WN++V  +      D AI V   M   G K D
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           +FT    + +CG L S + G   HGL+    F+ +V V  +LV MY+++G+++DA  VFD
Sbjct: 149 HFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFD 208

Query: 323 GMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ------GSFCPDEVTLASILSS 373
            +T K   +V+SWN++V    +  + R A+ L  +M         +   D +++ +IL +
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPA 268

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV-- 431
           C SL    +T+++H+YAI+NG  A   + NALI+ Y+KCGS+  A+  F  ++  D+V  
Sbjct: 269 CASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSW 328

Query: 432 ---------------------------------TWTSIIGAYAFHGLSKESIEVFEKMLS 458
                                            TW+++I  YA  G  +E+++ F++M+ 
Sbjct: 329 NAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMIL 388

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           +   P+S+  + +LSAC+  G +S+G+ 
Sbjct: 389 YGSEPNSVTIISLLSACASLGALSQGME 416


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 307/556 (55%), Gaps = 14/556 (2%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACV 173
           KLF +M+  +    NT+I G      +  PY     +  M+   V +D+ T+  +L AC 
Sbjct: 66  KLFTQMQNPDPFICNTMIRGY---ARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           +   +++GRR H  +LK GFG + FV +AL+  Y  CG    A  VFDE   RD+V WN+
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 234 MVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           M++ +    L + A  + + M +L+ ++ D  T  SLV +C  LG+ + G+ +H    + 
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             D ++ V  +++DMY K  +I+ A  VF+ +  K+V+SW +M+ G  ++G  +EA+ L 
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           + M       DE+TL  +LS+C       + + +H    K  +   L +E AL++ Y+KC
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GSI  ALQ F  ++  ++ TW ++IG  A HG  +++I +F++M    + PD + F+ +L
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
            ACSH GLV EGL  F  M + + I P  EHY C+ DLL R   + +A   + +MPI+  
Sbjct: 423 CACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKAN 482

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
           S      +GAC+  G   LA+    +++ELEP     Y ++SN+YA    W    +LRK 
Sbjct: 483 SVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQ 542

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML--CTVFGLMEENNVSGHCN 650
           M++    K PGCSWIE+ G IH FV+ DRSH Q   +YAM+   T    ++  +V G  N
Sbjct: 543 MKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTAN 602

Query: 651 VL---DKEMDECTLWL 663
           VL   ++E  E +L+L
Sbjct: 603 VLFDIEEEEKEHSLFL 618



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 153/289 (52%), Gaps = 6/289 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G L++GK LHS+  +LGL   L + N +L +Y KC   +  +++F+ +R +++++W 
Sbjct: 224 AQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWT 283

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           +++SG+   G        F++M L+ + LD IT   +L AC Q   ++ G+ +H  I K 
Sbjct: 284 SMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKF 343

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               +  + +ALVD+Y KCG ++ A +VF  +  R++  WN ++   A++  G+ AI++F
Sbjct: 344 EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLF 403

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYA 309
           + M  + +  D  TF +L+ +C   G    G  +    +K  F ++  +     +VD+  
Sbjct: 404 DQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ-AMKNKFQIEPRMEHYGCVVDLLC 462

Query: 310 KNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           +   +DDA    + M  K N V W T++      G    A K+ R +++
Sbjct: 463 RARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIE 511



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G L QGK +H  I K  +   L L+  ++ +Y KC + D   ++F  MRVRN+
Sbjct: 321 LSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 380

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            TWN LI G+     G +    F +M  D +  D +TF +LL AC  A  ++ G  +   
Sbjct: 381 FTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ- 439

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV 235
            +K  F +   +     +VDL  +   V+DA    + +  + + VLW  ++
Sbjct: 440 AMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 490


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 320/602 (53%), Gaps = 10/602 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  A     + G ++ S  ++ G+     + + ++   VK     + +++FD M  ++
Sbjct: 136 ALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKD 195

Query: 129 IVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V WN++I G +  G     +  F  M    ++   IT  SL++AC    ++++G+ +H 
Sbjct: 196 VVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHG 255

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           ++L +G G +  V ++ VD+Y K G +E AR VF ++  R+LV WN M+S    N L   
Sbjct: 256 YVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGE 315

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           +  +F+ +       D  T  SL+  C    S   G+ +HG  I+ SF+ +++++T++VD
Sbjct: 316 SFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVD 374

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           +Y+K G++  A  VF+ M  +NV++W  M+VG  QNG   +A++L   M +     + VT
Sbjct: 375 LYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVT 434

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF--GS 424
             S++ SC  L      R +H +  + G    +    AL++ Y+KCG I  A + F  GS
Sbjct: 435 FVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGS 494

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + + D+V W S+I  Y  HG   +++ ++ KM+   ++P+   FL +LSACSH  LV +G
Sbjct: 495 ISK-DVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQG 553

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           +  FN M  D++I P  +HY CL DLL R G   EA  L+  MP +P +  L A +  C+
Sbjct: 554 ISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCR 613

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
            H +I L    ++KLL L+   P  Y ++SN+YA  R W  V  +R +MR+    K PG 
Sbjct: 614 THKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGY 673

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVSGHCNVLDKEMDECT 660
           S +E    +HTF + D SHP    +Y  L ++   +E +    + S     +D+EM    
Sbjct: 674 SLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRM 733

Query: 661 LW 662
           LW
Sbjct: 734 LW 735



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 254/518 (49%), Gaps = 6/518 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           K  H+ I+   L     +  +++  Y   ++ +    +FD+      +  N ++ G +  
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 143 GG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        F  M   N+ +D  +    L+AC  + D E+G  + S  ++ G   N FV 
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           S+++    K G + +A+RVFD +  +D+V WN ++  Y      D A  +F  M   G+K
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
               T +SL+ +CG +G+ KLG+ +HG V+      D+LV TS VDMY+K G+I+ A  V
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F  M  +N+VSWN M+ G  +NG   E+  L   +++ S   D  T+ S+L  C   +  
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              + +H  AI++  ++ L +  A+++ YSKCGS+  A   F  +K+ +++TWT+++   
Sbjct: 349 ATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGL 407

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A +G +++++ +F +M    +  +S+ F+ ++ +C+H G +  G R  +  +       D
Sbjct: 408 AQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG-RSIHGHLFRLGFAFD 466

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
             + T L D+  + G +  A  + +   I        + I    +HG    A     K++
Sbjct: 467 IVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMI 526

Query: 561 E--LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           E  L+P++    +L+S    S      ++    M RD+
Sbjct: 527 EEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDH 564


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 315/561 (56%), Gaps = 18/561 (3%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI----VTWNTLISG 138
           KQ+H+H++  GL +   + ++V   + K   F D    FD +   ++    + +NTLI+ 
Sbjct: 22  KQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYA--FDFLNQTDLHVGTLPYNTLIAA 79

Query: 139 IINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
                 + TP      + R++ +    D  TF  +L+AC +   ++ G ++H   +K+GF
Sbjct: 80  Y---ASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF 136

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
             + +V ++L+  Y  CG    A RVFDE+L RD+V W  ++S Y    L D AI +F  
Sbjct: 137 LCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLK 196

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M +     +  TF S++ +CG +G   +G+ +HGLV K++F + ++V  +LVDMY K   
Sbjct: 197 MDV---VPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCEC 253

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           + +A ++FD +  +++VSW +++ G  Q    +++++L  DM      PD + L S+LS+
Sbjct: 254 LCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSA 313

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C SL      R V  Y  + G++  + I  AL++ Y+KCG I  AL  F  +   ++ TW
Sbjct: 314 CASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTW 373

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +++G  A HG   E+++ FE M+   +RP+ + FL +L+AC H GLV+EG  YF  MIS
Sbjct: 374 NALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMIS 433

Query: 494 D-YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             ++  P  EHY C+ DLL R GLL EAY  + +MP+ P     GA + ACK +G++ L+
Sbjct: 434 QPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELS 493

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           +     LLEL+      Y L+SN+YA+   W DV R+R++M+D    K PG S IE+ GE
Sbjct: 494 QEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGE 553

Query: 613 IHTFVSSDRSHPQAVHMYAML 633
            H F+  D +H +   ++ +L
Sbjct: 554 AHEFLVGDTNHSRNEDIHILL 574



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 219/406 (53%), Gaps = 14/406 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK   KF  +Q+G+Q+H   +K+G    L +QN +LH Y  C  +    ++FDEM 
Sbjct: 108 FPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEML 167

Query: 126 VRNIVTWNTLISGIINCG---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           VR++V+W  LISG +  G     +  + +  ++ NV     TF S+L AC +   + +G+
Sbjct: 168 VRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVA----TFVSVLVACGRMGYLSMGK 223

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H  + K  FG+   V +ALVD+Y KC  + +AR++FDE+  RD+V W  ++S      
Sbjct: 224 GVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCK 283

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               ++ +F  M++ G++ D    +S++++C +LG+   GR +   + +Q  + D+ + T
Sbjct: 284 QPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGT 343

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVDMYAK G I+ A  +F+G+  +N+ +WN ++ G   +G G EA+K    M+     P
Sbjct: 344 ALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRP 403

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQ 420
           +EVT  +IL++C    +  E R      I         +E+   +I+   + G +  A +
Sbjct: 404 NEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYK 463

Query: 421 CFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
              ++   PD++ W +++ A   +G    ++E+ +++LSH +   S
Sbjct: 464 FIRNMPLPPDVLIWGALLSACKANG----NVELSQEILSHLLELKS 505



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           YF    L+NS     + +  +QIH  +I      D  V + + + + K+    D    F 
Sbjct: 2   YFLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFL 61

Query: 323 GMTAKNV--VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
             T  +V  + +NT++  +  +   + A  +   ++   F PD  T   +L +C      
Sbjct: 62  NQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            E  QVH  A+K G    L ++N+L++ YS CG   GA + F  +   D+V+WT +I  Y
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGY 181

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
              GL  E+I +F KM    V P+   F+ VL AC   G +S G
Sbjct: 182 VRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMG 222


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 196/569 (34%), Positives = 306/569 (53%), Gaps = 3/569 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS- 137
           L +G+Q+H  ++K G    + +   ++ +Y +C      EK++  +  +++   N +IS 
Sbjct: 195 LVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISE 254

Query: 138 -GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            G   CG      F  +L   +  +  TF +++ AC    D+EV R LH   +K G G  
Sbjct: 255 YGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDE 314

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +A+V +Y K G +E+A + F  +  R+LV W  ++S Y  N  G  A+  F+ +  
Sbjct: 315 ISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILE 374

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G+  D   F++L++ C    +  LG QIHG V+K  +  DV V T+L+D+YAK   +  
Sbjct: 375 LGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRS 434

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  +  KN+VS+N ++ G+    D  +A+ L   +      PD VT A +LS    
Sbjct: 435 ARLVFHSLLDKNIVSFNAILSGY-IGADEEDAMALFSQLRLADIKPDSVTFARLLSLSAD 493

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            +   + + +HAY IK G +A  S+ NA+I  Y+KCGSI  A Q F S+   D ++W ++
Sbjct: 494 QACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAV 553

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I AYA HG  ++++ +FE+M      PD I  L VL ACS+ GL+ EG   FN M S Y 
Sbjct: 554 ISAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYG 613

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P+ EH+ C+ DLLGR G L EA   +   P           +  CK+HG +   + A+
Sbjct: 614 IKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIAS 673

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           + LL+L P +  +Y LVSN+YA      + AR+R +M D    K  G SWIEI  ++H F
Sbjct: 674 KHLLDLAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQF 733

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENNV 645
           V+SD+ HP++  +YA L  +   M++N +
Sbjct: 734 VASDKDHPESKEIYAKLDLLKSEMKQNMI 762



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 224/410 (54%), Gaps = 3/410 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           + Q L++S   G L  G+ +H+ + KLG  N     N ++++Y K     D + +FDEM 
Sbjct: 81  WPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEML 140

Query: 126 VRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VRN +TW TLI G   +N   +V    R M       +  T + +L+AC   +++  G +
Sbjct: 141 VRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQ 200

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H F++K GF  + FV ++L+ +Y +CG +  A +V+  +  +D+   N M+S Y     
Sbjct: 201 IHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGC 260

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+ AI VF  +   G++ + +TF++++++C      ++ R +HG+ IK     ++ V  +
Sbjct: 261 GEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNA 320

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +V +Y K+G +++A + F GM  +N+VSW  ++ G+ +NG+G++A++    +L+     D
Sbjct: 321 IVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFD 380

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
               A++L  C          Q+H + +K G    +S+  ALI+ Y+KC  +  A   F 
Sbjct: 381 SCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFH 440

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           S+ + ++V++ +I+  Y      ++++ +F ++    ++PDS+ F  +LS
Sbjct: 441 SLLDKNIVSFNAILSGY-IGADEEDAMALFSQLRLADIKPDSVTFARLLS 489



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 13/256 (5%)

Query: 37  AQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN 96
           A + D   L SQLR +    +S       +++ L +SA    L +GK LH++I+K G   
Sbjct: 460 ADEEDAMALFSQLRLADIKPDSVT-----FARLLSLSADQACLVKGKCLHAYIIKTGFEA 514

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTPYFRRML 154
             S+ N V+ +Y KC +  D  +LF  M   + ++WN +IS   +   G      F  M 
Sbjct: 515 NPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMK 574

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGF 212
            +    D IT  S+L+AC  +  +E G  L +  ++  +G+   +   + +VDL G+ G+
Sbjct: 575 KEEFVPDEITILSVLQACSYSGLLEEGFCLFN-DMESKYGIKPEIEHFACMVDLLGRAGY 633

Query: 213 VEDARRVFDEV-LCRDLVLWNVMVS-CYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSL 269
           + +A    +        +LW  +V  C     L  G IA  +L+ L   + G Y   S+L
Sbjct: 634 LSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNL 693

Query: 270 VNSCGTLGSSKLGRQI 285
               G L  +   R +
Sbjct: 694 YAGGGMLNEAARVRTV 709


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 192/610 (31%), Positives = 326/610 (53%), Gaps = 33/610 (5%)

Query: 82  GKQLHSHIMKLGLCNKLSLQ---NQVLHVYVKCKAFDDMEKLFDEMRVR------NIVTW 132
           G++ H+  +K G  ++   +   N +L +Y +    DD + LF            ++VTW
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 133 NTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
           NT+IS ++  G           M+   VR D +TF S L AC + + + +GR +H+ +LK
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 191 -VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL--CRDLVLWNVMVSCYALNCLGDGA 247
                 N FV+SALVD+Y     V  ARRVFD V    R L +WN M+  YA   + + A
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 248 IAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           + +F+ M  E G      T S ++ +C           +HG V+K+    +  V  +L+D
Sbjct: 371 LELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMD 430

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML---------- 356
           MYA+ G +D A R+F  +  ++VVSWNT++ G    G   EA +L+ +M           
Sbjct: 431 MYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSS 490

Query: 357 -----QGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
                +   C P+ +TL ++L  C +L+     +++H YA+++ +++ +++ +AL++ Y+
Sbjct: 491 TTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYA 550

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFL 469
           KCG +A +   F  +   +++TW  +I AY  HGL  E++ +F++M +     P+ + F+
Sbjct: 551 KCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFI 610

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-P 528
             L+ACSH GLV  GL  F+ M  D+ + P  + + C+ D+LGR G L EAY ++ SM P
Sbjct: 611 AALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEP 670

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
            E +     + +GAC++H ++ L + AAE+L ELEP +  +Y L+ N+Y++   W     
Sbjct: 671 GEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVA 730

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           +R  MR     K PGCSWIE+ G IH F++ + SHP +  ++A +  ++  M     +  
Sbjct: 731 VRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPD 790

Query: 649 CNVLDKEMDE 658
            + +  ++DE
Sbjct: 791 TSCVLHDVDE 800



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 218/483 (45%), Gaps = 40/483 (8%)

Query: 85  LHSHIMKLGLCNKLS--LQNQVLHVYVKC--KAFDDMEKLFDEMRVRNIVTWNTLISGI- 139
           LH+  ++  L ++ S  + N +L  Y +C                +R+ V++N+LIS + 
Sbjct: 85  LHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALC 144

Query: 140 -INCGGNVTPYFRRMLLDNVR-LDHITFNSLLRAC--VQADD-IEVGRRLHSFILKVGF- 193
                       R ML +    +   T  S+L AC  +  DD   +GR  H+F LK GF 
Sbjct: 145 LFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFL 204

Query: 194 --GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR------DLVLWNVMVSCYALNCLGD 245
             G   F  +AL+ +Y + G V+DA+ +F            D+V WN M+S         
Sbjct: 205 DEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCA 264

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSL 304
            A+ V   M   G++ D  TF+S + +C  L    LGR++H +V+K +    +  VA++L
Sbjct: 265 EAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASAL 324

Query: 305 VDMYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC- 361
           VDMYA N  +  A RVFD +   ++ +  WN M+ G+ Q G   EA++L   M   + C 
Sbjct: 325 VDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCA 384

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P E T++ +L +C           +H Y +K G+     ++NAL++ Y++ G +  A + 
Sbjct: 385 PSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRI 444

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML----------------SHAVRPDS 465
           F  +   D+V+W ++I      G + E+ ++  +M                 +H   P++
Sbjct: 445 FAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNN 504

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I  + +L  C+     + G       +  + +  D    + L D+  + G L  +  +  
Sbjct: 505 ITLMTLLPGCAALAAPARGKEIHGYAVR-HALESDIAVGSALVDMYAKCGCLAASRAVFD 563

Query: 526 SMP 528
            +P
Sbjct: 564 RLP 566



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 187/414 (45%), Gaps = 31/414 (7%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDA 216
           +LDH      +++     D    R LH+  L+       +  V +AL+  Y +CG ++ A
Sbjct: 60  QLDHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAA 119

Query: 217 RRVFDEVL--CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSC 273
             +F       RD V +N ++S   L    + A+     M  EG      FT  S++ +C
Sbjct: 120 LALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLAC 179

Query: 274 GTL---GSSKLGRQIHGLVIKQSF---DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
             L      +LGR+ H   +K+ F     +     +L+ MYA+ G +DDA  +F    A 
Sbjct: 180 SHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAA 239

Query: 328 ------NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
                 +VV+WNTM+    Q G   EAV++L DM+     PD VT AS L +C  L +  
Sbjct: 240 FSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLA 299

Query: 382 ETRQVHAYAIKNGVQAFLS-IENALINAYSKCGSIAGALQCFGSVKEP--DLVTWTSIIG 438
             R++HA  +K+   A  S + +AL++ Y+    +A A + F  V EP   L  W ++I 
Sbjct: 300 LGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMIC 359

Query: 439 AYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLM---ISD 494
            YA  G+ +E++E+F +M + A   P       VL AC+     SEG      M   +  
Sbjct: 360 GYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR----SEGFAGKEAMHGYVVK 415

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHG 547
             +  +      L D+  R+G +  A  + A   I+PR   +    I  C V G
Sbjct: 416 RGMAGNRFVQNALMDMYARLGEMDVARRIFAM--IDPRDVVSWNTLITGCVVQG 467



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 7/193 (3%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--G 138
           +GK++H + ++  L + +++ + ++ +Y KC        +FD +  RN++TWN LI   G
Sbjct: 522 RGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYG 581

Query: 139 IINCGGNVTPYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRL-HSFILKVGFGLN 196
           +   G      F  M        + +TF + L AC  +  ++ G  L H      G    
Sbjct: 582 MHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPT 641

Query: 197 CFVSSALVDLYGKCGFVEDARRVFD--EVLCRDLVLWNVMV-SCYALNCLGDGAIAVFNL 253
             + + +VD+ G+ G +++A  +    E   + +  W+ ++ +C     +  G +A   L
Sbjct: 642 PDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERL 701

Query: 254 MRLEGMKGDYFTF 266
             LE  +  ++  
Sbjct: 702 FELEPGEASHYVL 714


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 199/592 (33%), Positives = 318/592 (53%), Gaps = 18/592 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV--- 126
           L + A   + + G+ +H   +K G      + N ++ +Y KC    D E  F E      
Sbjct: 172 LPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAG 231

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDN--VRLDHITFNSLLRACVQADDIEVGR 182
           RN+V+WN ++ G    G  G      R M ++   V  D IT  S+L  C    ++   R
Sbjct: 232 RNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLR 291

Query: 183 RLHSFILKVGFGLNC-FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            LH+F+++ G  L    V +AL+  YG+CG +  A RVFD +  + +  WN ++  +A N
Sbjct: 292 ELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQN 351

Query: 242 CLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                AI +F  M    G K D+F+  SL+ +CG L     G+  HG +++   + D  +
Sbjct: 352 GEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFI 411

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML--QG 358
             SL+ +Y + G    A  +FD +  K+ VSWNTM+ G+ QNG   E+++L R+M   +G
Sbjct: 412 RVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKG 471

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV--QAFLSIENALINAYSKCGSIA 416
              P  +   S L +C  L      +++H +A+K  +   +FLS  +++I+ YSKCGS+ 
Sbjct: 472 GHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLS--SSIIDMYSKCGSVD 529

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  +K  D V+WT +I  YA +G  KE++ +++KM    + PD   +L +L AC 
Sbjct: 530 DARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACG 589

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H G++ +GL +F  M +   I    EHY C+  +L R G   +A  L+  MP EP +  L
Sbjct: 590 HAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKIL 649

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
            + + AC +HG + L K  A+KLLELEP K  +Y L SN+YA  R W ++ ++RKM+RD 
Sbjct: 650 SSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDA 709

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
              K PGCSWI+IAG++++FV+ + S P+   M+ +    + L E+   +G+
Sbjct: 710 GVAKEPGCSWIDIAGKVYSFVAGENSLPE---MHKVRKMWYSLEEKIRAAGY 758



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/409 (32%), Positives = 212/409 (51%), Gaps = 14/409 (3%)

Query: 82  GKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G+Q+H+   KLGL +    + N ++ +Y +C   DD EK+F+ M  RN+V+WN L++ + 
Sbjct: 82  GRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVA 141

Query: 141 NCGGNVTPYFRRMLLD---NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
           +    +   FR  L D       D  T  ++L  C      E GR +H   +K G+    
Sbjct: 142 DPRRGLE-LFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAP 200

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEV---LCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            VS+ LVD+Y KCG + DA   F E      R++V WNVM+  YA N     A  +   M
Sbjct: 201 RVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREM 260

Query: 255 RLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV-LVATSLVDMYAKN 311
           ++E  G+  D  T  S++  C  L      R++H  V+++   L   +V  +L+  Y + 
Sbjct: 261 QMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRC 320

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASI 370
           G +  ACRVFDG+ +K V SWN ++    QNG+   A++L R+M       PD  ++ S+
Sbjct: 321 GCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSL 380

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L +CG+L      +  H + ++NG++    I  +L++ Y +CG  + A   F +V+E D 
Sbjct: 381 LLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDE 440

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSH--AVRPDSIAFLEVLSACSH 477
           V+W ++I  Y+ +GL  ES+++F +M S      P  +A    L ACS 
Sbjct: 441 VSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSE 489



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 195/368 (52%), Gaps = 28/368 (7%)

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLL--DNVRLDHITFNSLLRACVQADDIEVGRR 183
           ++  WN L++ +   G   +      R+L   D V  D  T    L++C + DD   GR+
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSC-RGDD---GRQ 84

Query: 184 LHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           +H+   K+G    + FV ++LV +YG+CG V+DA +VF+ +  R+LV WN +++  A   
Sbjct: 85  VHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPR 144

Query: 243 LGDGAIAVFNLMR--LEGMKG----DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            G        L R  LE + G    D  T  +++  C  L   + GR +HGL +K  +D 
Sbjct: 145 RG------LELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA 198

Query: 297 DVLVATSLVDMYAKNGNIDDA-CRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
              V+  LVDMYAK G + DA C   +      +NVVSWN M+ G+ +NG+   A  LLR
Sbjct: 199 APRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLR 258

Query: 354 DM-LQGSFCP-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS-IENALINAYS 410
           +M ++    P DE+T+ S+L  C  L    + R++HA+ ++ G+      + NALI AY 
Sbjct: 259 EMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYG 318

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDSIAFL 469
           +CG +  A + F  +    + +W ++IGA+A +G +  +IE+F +M +    +PD  +  
Sbjct: 319 RCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIG 378

Query: 470 EVLSACSH 477
            +L AC +
Sbjct: 379 SLLLACGN 386



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 2/117 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL   ++   ++ GK++H   +K  LC    L + ++ +Y KC + DD    FD ++ 
Sbjct: 481 TSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKA 540

Query: 127 RNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           ++ V+W  +I+G  +   G      + +M  + +  D  T+  LL AC  A  +E G
Sbjct: 541 KDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDG 597


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 204/640 (31%), Positives = 341/640 (53%), Gaps = 14/640 (2%)

Query: 29  NQTTTITNAQKHDRSVLSSQ-LRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLH 86
           N  + +T AQ + R     Q L     I +  H  + F ++  LK+            LH
Sbjct: 100 NTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLH 159

Query: 87  SHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV 146
           + + KLG      +   ++  Y      D    +FD++  +++V+W    +G++ C    
Sbjct: 160 ACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSW----TGMVACYAEN 215

Query: 147 TPY------FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
             Y      F +M +   + ++ T +  L++C+  +   VG+ +H   LK  +  + FV 
Sbjct: 216 CFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVG 275

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
            AL++LY K G + DA+R+F+E+   DL+ W++M++ YA +     A+ +F  MR   + 
Sbjct: 276 IALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVV 335

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + FTF+S++ +C +  S  LG+QIH  V+K   + +V V+ +++D+YAK G I+++ ++
Sbjct: 336 PNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKL 395

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+ +  +N V+WNT++VG+ Q GDG  A+ L   ML+    P EVT +S+L +  SL+  
Sbjct: 396 FEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAAL 455

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
               Q+H+  IK        + N+LI+ Y+KCG I  A   F  + + D V+W ++I  Y
Sbjct: 456 EPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGY 515

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           + HG+S E++ +F+ M     +P+ + F+ VLSACS+ GL+ +G  +F  M  DY I P 
Sbjct: 516 SMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPC 575

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHYTC+  LLGR+G   EA  L+  +  +P      A +GAC +H  + L +  A+ +L
Sbjct: 576 IEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVL 635

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           E+EP     + L+SN+YA+   W +VA +RK M+     K PG SW+E  G +H F   D
Sbjct: 636 EMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGD 695

Query: 621 RSHPQAVHMYAMLCTVFGLMEENNVSGHCN--VLDKEMDE 658
            SHP    + AML  +     +      CN  +LD + DE
Sbjct: 696 TSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDE 735



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 261/492 (53%), Gaps = 15/492 (3%)

Query: 42  RSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQ----------GKQLHSHIMK 91
           R+++    + S  +H+  +  H     AL   +    LQQ          GK LH HI+K
Sbjct: 4   RTIVRDSTKLSQLLHQCRNIHHQQCLSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILK 63

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPY 149
            G    L  QN +L+ YV+  +  D  KLFDEM   N +++ TL  G    +       +
Sbjct: 64  RGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHF 123

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
             R+  +   ++   F +LL+  V  D   +   LH+ + K+G   + FV +AL+D Y  
Sbjct: 124 ILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSV 183

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
            G V+ AR VFD++ C+D+V W  MV+CYA NC  + ++ +FN MR+ G K + FT S  
Sbjct: 184 RGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGA 243

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           + SC  L +  +G+ +HG  +K  +D D+ V  +L+++YAK+G I DA R+F+ M   ++
Sbjct: 244 LKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDL 303

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHA 388
           + W+ M+  + Q+   +EA+ L   M Q S  P+  T AS+L +C S S+S +  +Q+H+
Sbjct: 304 IPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS-SVSLDLGKQIHS 362

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
             +K G+ + + + NA+++ Y+KCG I  +++ F  + + + VTW +II  Y   G  + 
Sbjct: 363 CVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGER 422

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
           ++ +F  ML H ++P  + +  VL A +    +  GL+  +L I   +   D+     L 
Sbjct: 423 AMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN-KDTVVANSLI 481

Query: 509 DLLGRVGLLVEA 520
           D+  + G + +A
Sbjct: 482 DMYAKCGRINDA 493



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 118/257 (45%), Gaps = 21/257 (8%)

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G+ +H  ++K+   LD+     L++ Y ++ ++ DA ++FD M   N +S+ T+  G+ +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           +    +A+  +  + +     +     ++L    S+ ++     +HA   K G  A   +
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
             ALI+AYS  G++  A   F  +   D+V+WT ++  YA +   +ES+++F +M     
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS----------DYHILPDSEHYTCLTDLL 511
           +P++      L +C        GL  FN+  S          D+ +         L +L 
Sbjct: 234 KPNNFTISGALKSCL-------GLEAFNVGKSVHGCALKGCYDHDLFVG----IALLELY 282

Query: 512 GRVGLLVEAYDLLASMP 528
            + G +++A  L   MP
Sbjct: 283 AKSGEIIDAQRLFEEMP 299


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 284/508 (55%), Gaps = 4/508 (0%)

Query: 128 NIVTWNTLISGIINCGGNVTPYFR--RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           +I  WN L++     G +     R  R L    R D  TF   L AC +  D+  G  + 
Sbjct: 68  SIPAWNALLAAHSR-GASPHEALRVFRALPPAARPDSTTFTLALSACARLGDLATGEVVT 126

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
                 G+G + FV S++++LY KCG ++DA +VFD +  RD V W+ MV+ +       
Sbjct: 127 DRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPV 186

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            AI ++  MR +G++ D      ++ +C   G +++G  +HG +++ +  +DV+++TSLV
Sbjct: 187 QAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLV 246

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMYAKNG  D A RVF+ M  +N VSW+ ++    Q G+  EA+ L R M      P+  
Sbjct: 247 DMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSG 306

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            +   L +C  L +    + +H + ++  ++    +  A+I+ YSKCGS++ A   F  V
Sbjct: 307 PVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKV 365

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              DL++W  +I     HG  ++++ +F++M  + VRPD   F  +LSA SH GLV EG 
Sbjct: 366 VSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGK 425

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            +FN M+++Y I P  +H  C+ DLL R GL+ EA  L+AS+  +P    L A +  C  
Sbjct: 426 FWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLN 485

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           +  + L +  AEK+LEL+P      ALVSN+YA+ + W+ V  +RK+M+D+   K PGCS
Sbjct: 486 NNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCS 545

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            IEI G +HTFV  D+SHPQ   +  M+
Sbjct: 546 SIEIRGALHTFVMEDQSHPQHRQILQMV 573



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 194/347 (55%), Gaps = 8/347 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL   A+ G L  G+ +       G  N + + + VL++Y KC A DD  K+FD MR
Sbjct: 106 FTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMR 165

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ VTW+T+++G +N G  V     + RM  D +  D +    +++AC    D  +G  
Sbjct: 166 KRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGAS 225

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H ++L+    ++  +S++LVD+Y K G  + ARRVF+ +  R+ V W+ ++S  A    
Sbjct: 226 VHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGN 285

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D A+ +F +M++ G+  +       + +C  LG  KLG+ IHG +++ + +LD +V T+
Sbjct: 286 ADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILR-TLELDRMVGTA 344

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           ++DMY+K G++  A  +FD + +++++SWN M+   G +G GR+A+ L ++M +    PD
Sbjct: 345 VIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPD 404

Query: 364 EVTLASILSSCGSLSISCETR-----QVHAYAIKNGVQAFLSIENAL 405
             T AS+LS+     +  E +      V+ Y I+ G +  + I + L
Sbjct: 405 HATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLL 451


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 181/535 (33%), Positives = 291/535 (54%), Gaps = 3/535 (0%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD-NV 158
             +L++Y K     D  ++FD M  RN  +W+T+++G     C       FR ML +   
Sbjct: 157 TSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPS 216

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
                   ++L A      + +G ++H  I+K G      V ++LV +Y K G +  A  
Sbjct: 217 EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFH 276

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+    R+ + W+ M++ YA N   D A+++F+ M   G     FTF  ++N+   LG+
Sbjct: 277 VFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGA 336

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
             +G+Q HGL++K  F++ + V ++LVDMYAK G I DA   FD +   ++V W  MV G
Sbjct: 337 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSG 396

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             QNG+  EA+ L   M +    P + T+AS L +C  ++     +Q+H   +K G+   
Sbjct: 397 HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLG 456

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             + +AL   YSKCG++   +  F  + + D++ W SII  ++ +G    ++++FE+M  
Sbjct: 457 APVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKM 516

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
               PD+I F+ +L ACSH GLV  G  YF+LM  DY + P  +HY C+ D+L R G+L 
Sbjct: 517 EGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLK 576

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           EA D + S+ I+  +      +GAC+      +  +A E+L+EL       Y L+SN+YA
Sbjct: 577 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYA 636

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           S+R W DV R+R +MR    +K PGCSW+E+   +H FV  ++ HP+A ++ A L
Sbjct: 637 SQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQL 691


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 316/558 (56%), Gaps = 18/558 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ G+ +H   MK+G    +   N +L VYVKC +  +  KLFDEM  R++V+W ++ISG
Sbjct: 166 VEYGETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISG 225

Query: 139 IINCGGNVTPYFRRMLLDNVRLD----HITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            I  G + +  F+  L + +R++     +T   +L+AC   + +  GR LHS+++K GF 
Sbjct: 226 YIY-GESFSRGFK--LFNKMRMEMEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFM 282

Query: 195 LNCFVSSALVDLYGKCGFV-EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV--F 251
           ++  V ++++ +Y K G   E+    F E+  RD++ WN++++ Y+    GD A     F
Sbjct: 283 VDRSVQNSILRMYTKTGGSGEEVETFFSEIEERDIISWNILIAFYSFR--GDIAEVAERF 340

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           N MR E +     + + +V++     +   G  +H   IK     D ++ T L+ +YAK 
Sbjct: 341 NEMRRE-VTSSIESLTLVVSAIANCANLSEGGMLHCSAIKTGLH-DTVLMTCLLALYAKC 398

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G ++ + ++F  +  +N ++W++M+ GF QNG  +EA++L + ML     P+   +++++
Sbjct: 399 GALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQMLASGLQPNHDIISTLV 458

Query: 372 SSCGSLSISCETRQVHAYAIKN----GVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            +   L      +  HA+ I+N      +    +E +L+N Y +CGSI+ AL CF  V  
Sbjct: 459 IAYTHLGALQLGKATHAFFIRNLSSWPEEDSAPLETSLLNMYIRCGSISSALICFNRVVV 518

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D+VTWTS+I  +  HGL+ E+++ F+ ML   V+P+S+ FL +LSACSH GLV EG   
Sbjct: 519 KDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSVTFLSLLSACSHSGLVREGCEV 578

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F+ M   + I PD  HYTC+ DLLGR G L EA  ++  +   P S   GA + A +VH 
Sbjct: 579 FHSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILKLVTCPDSRIWGALLAASRVHE 638

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
              L ++AAEKLLELEP     Y L SN+ AS   W +V  +R++M +    K PG S I
Sbjct: 639 DKKLGEYAAEKLLELEPDNVGYYTLWSNIEASLERWGEVEEVRRVMHERDLKKKPGWSCI 698

Query: 608 EIAGEIHTFVSSDRSHPQ 625
           E+ G IH FVS D SH Q
Sbjct: 699 EVKGMIHGFVSGDTSHHQ 716



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 206/416 (49%), Gaps = 19/416 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-KAFDDMEKLFDEMRVRN 128
           L+  + F  + +G++LHS+++K G     S+QN +L +Y K   + +++E  F E+  R+
Sbjct: 257 LQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIEERD 316

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLH 185
           I++WN LI+     G    V   F  M  +    ++ +T   ++ A     ++  G  LH
Sbjct: 317 IISWNILIAFYSFRGDIAEVAERFNEMRREVTSSIESLTL--VVSAIANCANLSEGGMLH 374

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
              +K G   +  + + L+ LY KCG +E + ++F ++  R+ + W+ M+S +  N    
Sbjct: 375 CSAIKTGLH-DTVLMTCLLALYAKCGALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFK 433

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ----SFDLDVLVA 301
            AI ++  M   G++ ++   S+LV +   LG+ +LG+  H   I+       +    + 
Sbjct: 434 EAIELYQQMLASGLQPNHDIISTLVIAYTHLGALQLGKATHAFFIRNLSSWPEEDSAPLE 493

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           TSL++MY + G+I  A   F+ +  K+VV+W +M+ GFG +G   EA+K  + ML+    
Sbjct: 494 TSLLNMYIRCGSISSALICFNRVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQ 553

Query: 362 PDEVTLASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           P+ VT  S+LS+C   G +   CE      +  +  ++  L+    +++   + G +  A
Sbjct: 554 PNSVTFLSLLSACSHSGLVREGCEVFHSMKWGFR--IEPDLNHYTCMVDLLGRSGKLKEA 611

Query: 419 LQC-FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           L      V  PD   W +++ A   H   K      EK+L   + PD++ +  + S
Sbjct: 612 LTVILKLVTCPDSRIWGALLAASRVHEDKKLGEYAAEKLLE--LEPDNVGYYTLWS 665



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 185/368 (50%), Gaps = 13/368 (3%)

Query: 165 FNSLLRACVQADDIEVGRRLH-SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           ++SLL +C   ++++  +R+H S I+  GF     V+S L+ LY +      A  + +  
Sbjct: 54  YSSLLHSC---NNLQALKRIHASLIVSSGFQ-PLSVASKLITLYSQLNDFRSAFSICNSF 109

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS-KLG 282
              + V+WN ++  +  + L   A+  +  MR  G+  D FTF  +  +  +LG   + G
Sbjct: 110 EEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGVAHDSFTFPIINQAIWSLGCRVEYG 169

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
             +H + +K  F  DV    +++++Y K G+I +A ++FD MT +++VSW +++ G+   
Sbjct: 170 ETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYG 229

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
                  KL   M +    P+ VT+  +L +C +     E R++H+Y IK G     S++
Sbjct: 230 ESFSRGFKLFNKM-RMEMEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQ 288

Query: 403 NALINAYSKCGSIAGALQCFGS-VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           N+++  Y+K G     ++ F S ++E D+++W  +I  Y+F G   E  E F +M    V
Sbjct: 289 NSILRMYTKTGGSGEEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEM-RREV 347

Query: 462 RPDSIAFLEVLSACSHGGLVSE-GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
                +   V+SA ++   +SE G+ + + + +  H   D+   TCL  L  + G L  +
Sbjct: 348 TSSIESLTLVVSAIANCANLSEGGMLHCSAIKTGLH---DTVLMTCLLALYAKCGALEIS 404

Query: 521 YDLLASMP 528
             L   +P
Sbjct: 405 AQLFRDIP 412



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
           F +SSL++SC  L + K   +IH  +I  S    + VA+ L+ +Y++  +   A  + + 
Sbjct: 52  FPYSSLLHSCNNLQALK---RIHASLIVSSGFQPLSVASKLITLYSQLNDFRSAFSICNS 108

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
               N V WN+++     +G    A+     M +     D  T   I  +  SL    E 
Sbjct: 109 FEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGVAHDSFTFPIINQAIWSLGCRVEY 168

Query: 384 RQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            + VH  A+K G    +   N ++  Y KCGSI  A + F  +   DLV+WTSII  Y +
Sbjct: 169 GETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIY 228

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
                   ++F KM    + P+S+  + +L ACS    V+EG
Sbjct: 229 GESFSRGFKLFNKM-RMEMEPNSVTMVVMLQACSAFESVNEG 269


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 302/555 (54%), Gaps = 4/555 (0%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLH--VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +Q+H+H++K        +   VL     +     D    +F+ +       +N +I G+ 
Sbjct: 38  QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                 N    F++M   +V+ D  TF+S+L+AC +   +  G ++H+ ILK GF  N F
Sbjct: 98  FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF 157

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           V + L+ +Y  CG +  AR VFD +  R +V WN M+S Y  N L D  + +F  +    
Sbjct: 158 VENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR 217

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++ D  T  S++ +CG L + ++G  I   ++ +    +  + TSL+DMYAK G +D A 
Sbjct: 218 IEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTAR 277

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           ++FD M  ++VV+W+ M+ G+ Q    +EA+ L  +M +G+  P+EVT+ S+L SC  L 
Sbjct: 278 KLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                + VH Y  K  ++  +++   LI+ Y+KCG I  +++ F  +   ++ TWT++I 
Sbjct: 338 AYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQ 397

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
             A +G  K ++E F  ML + V+P+ + F+ VLSACSH  LV +G   FN M  D+ I 
Sbjct: 398 GLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIE 457

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  EHY C+ D+LGR G L EAY  + +MP  P +      + +C+ H +I +A+ + E 
Sbjct: 458 PRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEH 517

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           +  LEP+   +Y L+SN YA      D  R+R ++++    K+PGCS IE+ G +H F S
Sbjct: 518 ITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFS 577

Query: 619 SDRSHPQAVHMYAML 633
            D  H  +  ++  L
Sbjct: 578 EDGEHKHSKEIHDAL 592



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 220/413 (53%), Gaps = 9/413 (2%)

Query: 55  IHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +HE +     F +S  LK  ++   L++G+Q+H+ I+K G  +   ++N ++ +Y  C  
Sbjct: 112 MHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQ 171

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRA 171
                 +FD M  R+IV WN+++SG    G    V   FR++L   +  D +T  S+L A
Sbjct: 172 IGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMA 231

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C +  ++E+G  +  +I+  G   N  ++++L+D+Y KCG V+ AR++FDE+  RD+V W
Sbjct: 232 CGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAW 291

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           + M+S YA       A+ +F+ M+   +  +  T  S++ SC  LG+ + G+ +H  + K
Sbjct: 292 SAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKK 351

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
           +   L V + T L+D YAK G ID +  VF  M+ KNV +W  ++ G   NG+G+ A++ 
Sbjct: 352 KKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEF 411

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYS 410
              ML+    P++VT   +LS+C    +  + R +     ++  ++  +     +++   
Sbjct: 412 FSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILG 471

Query: 411 KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           + G +  A Q   ++   P+ V W +++ +   H    ++IE+ EK L H  R
Sbjct: 472 RAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH----KNIEMAEKSLEHITR 520


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 194/592 (32%), Positives = 315/592 (53%), Gaps = 13/592 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E T    +FY   L+       +   +++H+HI+K G      L   +++VY KC   
Sbjct: 61  IREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTM 120

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +   K+FDE+  RN+V+W TL++G ++          FR ML       + T  + L A 
Sbjct: 121 ETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSAS 180

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                 E+G+++H + +K     +  + ++L  LY KCG +E A + F  +  ++++ W 
Sbjct: 181 SDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWT 240

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            ++S +  N      +  F  M  E ++ + FT +S ++ C  + S  +G QIH L IK 
Sbjct: 241 TVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKL 300

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-------- 344
            F+ ++ +  S++ +Y K G I +A ++FD M   ++V+WN M+ G  +  D        
Sbjct: 301 GFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAA 360

Query: 345 ---GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
              G EA+ +   + +    PD  T +S+LS C SL    +  QVHA  IK G  + + +
Sbjct: 361 HQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVV 420

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
             AL+N Y+KCGSI  A + F  +    L++WTS+I  YA +G  ++++ +FE M    V
Sbjct: 421 GTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGV 480

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           RP+ I F+ VLSACSH G+V E L YF +M ++Y I P  +HY CL D+  R+G L EA+
Sbjct: 481 RPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAF 540

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           D +  M +EP        I  C+  G + L  +AAE+LL L+P     Y L+ N+Y S  
Sbjct: 541 DFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAG 600

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            W +V+R+RKMM++    ++   SWI I  +I++F  + RSH Q+  MY +L
Sbjct: 601 KWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELL 652


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 178/486 (36%), Positives = 266/486 (54%), Gaps = 2/486 (0%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           +R ML      D  +F  +L++C        G++LH  + K G     FV +AL+ +Y K
Sbjct: 41  YRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCK 100

Query: 210 CGFVEDARRVFDE--VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
           CG V DAR+VF+E     +  V +N ++S Y  N     A  +F  M+  G+  D  T  
Sbjct: 101 CGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTML 160

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
            LV  C       LGR +HG  +K   D +V V  S + MY K G+++   R+FD M  K
Sbjct: 161 GLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVK 220

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
            +++WN ++ G+ QNG   + ++L   M     CPD  TL S+LSSC  L       +V 
Sbjct: 221 GLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVG 280

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
                NG    + + NA I+ Y++CG++A A   F  +    LV+WT++IG Y  HG+ +
Sbjct: 281 KLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGE 340

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
             + +F+ M+   +RPD   F+ VLSACSH GL  +GL  F  M  +Y + P  EHY+CL
Sbjct: 341 IGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCL 400

Query: 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567
            DLLGR G L EA + + SMP+EP     GA +GACK+H ++ +A+ A  K++E EP+  
Sbjct: 401 VDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNI 460

Query: 568 VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
             Y L+SN+Y+  +    + R+R MMR+    K PG S++E  G +H F++ DRSH Q  
Sbjct: 461 GYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTE 520

Query: 628 HMYAML 633
            ++ ML
Sbjct: 521 EVHRML 526



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 212/436 (48%), Gaps = 18/436 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE--MRVR 127
           LK  A       G+QLH H+ K G   +  +   ++ +Y KC    D  K+F+E     +
Sbjct: 60  LKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQ 119

Query: 128 NIVTWNTLISGIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
             V +N LISG       VT     FRRM    V +D +T   L+  C   + + +GR L
Sbjct: 120 LSVCYNALISG-YTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSL 178

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H   +K G      V ++ + +Y KCG VE  RR+FDE+  + L+ WN ++S Y+ N L 
Sbjct: 179 HGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLA 238

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
              + ++  M+  G+  D FT  S+++SC  LG+ K+G ++  LV    F  +V V+ + 
Sbjct: 239 YDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNAS 298

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MYA+ GN+  A  VFD M  K++VSW  M+  +G +G G   + L  DM++    PD 
Sbjct: 299 ISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDG 358

Query: 365 VTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
                +LS+C    ++ +  ++       Y ++ G + +    + L++   + G +  A+
Sbjct: 359 AVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY----SCLVDLLGRAGRLDEAM 414

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           +   S+  EPD   W +++GA   H     +   F K++     P++I +  ++S     
Sbjct: 415 EFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMSNIYSD 472

Query: 479 GLVSEGLRYFNLMISD 494
               EG+    +M+ +
Sbjct: 473 SKNQEGIWRIRVMMRE 488



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 158/325 (48%), Gaps = 6/325 (1%)

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WNV +   A   L   +I+++  M   G   D F+F  ++ SC +L     G+Q+H  V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFD--GMTAKNVVSWNTMVVGFGQNGDGREA 348
           K   + +  V T+L+ MY K G + DA +VF+    +++  V +N ++ G+  N    +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
             + R M +     D VT+  ++  C         R +H   +K G+ + +++ N+ I  
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KCGS+    + F  +    L+TW ++I  Y+ +GL+ + +E++E+M S  V PD    
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLS+C+H G    G     L+ S+   +P+         +  R G L +A  +   MP
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319

Query: 529 IEPRSDTLGAFIGACKVH--GSIGL 551
           ++    +  A IG   +H  G IGL
Sbjct: 320 VKSLV-SWTAMIGCYGMHGMGEIGL 343


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 318/569 (55%), Gaps = 6/569 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G+++H+ +++ G    +   N ++ +Y K         +F ++   ++V+WN  ISG
Sbjct: 218 LEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISG 277

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG--RRLHSFILKVGFG 194
            +  G +        +M    +  +  T +S+L+AC  A        R++H F++K    
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD 337

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALNCLGDGAIAVFNL 253
            + ++  ALVD+Y K G ++DAR+VF+ +  +DL+LWN ++S C    C G+ ++++F  
Sbjct: 338 SDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGE-SLSLFCR 396

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           MR EG   +  T ++++ S  +L +     Q+H L  K  F  D  V   L+D Y K   
Sbjct: 397 MRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC 456

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +  A +VF+  ++ N++++ +M+    Q   G +A+KL  +ML+    PD   L+S+L++
Sbjct: 457 LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C SLS   + +QVHA+ IK      +   NAL+  Y+KCGSI  A   F  + +  +V+W
Sbjct: 517 CASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSW 576

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           +++IG  A HG  K +++VF +M+   + P+ I    VL AC+H GLV E   YF+ M  
Sbjct: 577 SAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKE 636

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            + I    EHY+C+ DLLGR G L +A +L+ SMP E  +   GA + A +VH    L K
Sbjct: 637 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGK 696

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
            AAEKL  LEP K   + L++N YAS   W +VA++RK+M+D+   K P  SW+E+   +
Sbjct: 697 LAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRV 756

Query: 614 HTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           HTF+  D+SHP+A  +YA L  +  LM +
Sbjct: 757 HTFIVGDKSHPRARDIYAKLEELGDLMSK 785



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 215/430 (50%), Gaps = 21/430 (4%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+H++K GL +  + +N +L  Y KC+      ++FDE      V+W++L++   N
Sbjct: 23  GAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 142 CGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
              N  P      FR M    VR +      +L+    A D  +G ++H+  +  G   +
Sbjct: 81  ---NALPREALAAFRAMRARGVRCNEFALPIVLKC---APDAGLGVQVHAVAVSTGLSGD 134

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
            FV++ALV +YG  GFV++ARRVFDE    R+ V WN M+S +  N     A+ +F  M 
Sbjct: 135 IFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMV 194

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G++ + F FS +VN+C      + GR++H +V++  +D DV  A +LVDMY+K G+I 
Sbjct: 195 WSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIH 254

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS--S 373
            A  VF  +   +VVSWN  + G   +G  + A++LL  M      P+  TL+SIL   +
Sbjct: 255 MAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
                     RQ+H + IK    +   I  AL++ Y+K G +  A + F  +   DL+ W
Sbjct: 315 GAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLW 374

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL--- 490
            ++I   +  G   ES+ +F +M       +      VL + +    +S+  +   L   
Sbjct: 375 NALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEK 434

Query: 491 --MISDYHIL 498
              +SD H++
Sbjct: 435 IGFLSDSHVV 444



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 162/350 (46%), Gaps = 21/350 (6%)

Query: 48  QLRNSGT-IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLH 106
           ++R  G+ I+ +T +A       LK +A    +    Q+H+   K+G  +   + N ++ 
Sbjct: 396 RMRKEGSDINRTTLAA------VLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLID 449

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHIT 164
            Y KC       K+F+E    NI+ + ++I+ +  C  G +    F  ML   +  D   
Sbjct: 450 SYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFV 509

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            +SLL AC      E G+++H+ ++K  F  + F  +ALV  Y KCG +EDA   F  + 
Sbjct: 510 LSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLP 569

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            + +V W+ M+   A +  G  A+ VF  M  E +  ++ T +S++ +C   G   L  +
Sbjct: 570 DKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAG---LVDE 626

Query: 285 IHGLV--IKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGF 339
             G    +K+ F +D      + ++D+  + G +DDA  + + M  + N   W  ++   
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 340 GQNGD---GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
             + D   G+ A + L  +L+       V LA+  +S G      + R++
Sbjct: 687 RVHRDPELGKLAAEKLF-VLEPEKSGTHVLLANTYASAGMWDEVAKVRKL 735


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 181/533 (33%), Positives = 291/533 (54%), Gaps = 3/533 (0%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD-NVRL 160
           +L++Y K     D  ++FD M  RN  +W+T+++G     C       FR ML +     
Sbjct: 53  LLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEK 112

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
                 ++L A      + +G ++H  I+K G      V ++LV +Y K G +  A  VF
Sbjct: 113 SEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVF 172

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           +    R+ + W+ M++ YA N   D A+++F+ M   G     FTF  ++N+   LG+  
Sbjct: 173 ESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALA 232

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           +G+Q HGL++K  F++ + V ++LVDMYAK G I DA   FD +   ++V W  MV G  
Sbjct: 233 VGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHV 292

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QNG+  EA+ L   M +    P + T+AS L +C  ++     +Q+H   +K G+     
Sbjct: 293 QNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAP 352

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + +AL   YSKCG++   +  F  + + D++ W SII  ++ +G    ++++FE+M    
Sbjct: 353 VGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEG 412

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
             PD+I F+ +L ACSH GLV  G  YF+LM  DY + P  +HY C+ D+L R G+L EA
Sbjct: 413 TIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEA 472

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            D + S+ I+  +      +GAC+      +  +A E+L+EL       Y L+SN+YAS+
Sbjct: 473 KDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQ 532

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           R W DV R+R +MR    +K PGCSW+E+   +H FV  ++ HP+A ++ A L
Sbjct: 533 RKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQL 585


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 301/560 (53%), Gaps = 9/560 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QL S  +K GL N +   + +L VY KC    D  ++FD M  RN V+WN LI+G   
Sbjct: 112 GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTE 171

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   +    F  M  + +  D  TF SLL A V+     +  +LH  I+K G  L   V
Sbjct: 172 SGDMASALELFLEMEREGLVPDEATFASLLTA-VEGPSCFLMHQLHGKIVKYGSALGLTV 230

Query: 200 SSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLE 257
            +A +  Y +CG ++D+RR+FD +   RDL+ WN M+  Y  N + D A+  F  +M+  
Sbjct: 231 LNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQES 290

Query: 258 GMKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK---NGN 313
           G+  D ++F+S+++SC   G     GR IHGLVIK + +    V  +L+ MY +   N  
Sbjct: 291 GVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCM 350

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA + F+ +  K+ VSWN+M+ G+ Q+G   +A+K  R M   +   DE   ++ L S
Sbjct: 351 MEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRS 410

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              L++    +Q+H   I +G  +   + ++LI  YSK G I  A + F    +   V W
Sbjct: 411 SSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW 470

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            ++I  YA HG ++    +F +ML      D I F+ ++++CSH GLV EG    N M +
Sbjct: 471 NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
            Y +    EHY C  DL GR G L +A  L+ SMP EP +      +GAC++HG++ LA 
Sbjct: 531 KYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELAS 590

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             A  L   EP +   Y L+S++Y+    W D A ++++M+     KVPG S IE+  E+
Sbjct: 591 DVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKNEV 650

Query: 614 HTFVSSDRSHPQAVHMYAML 633
           H+F + D+SHP+   +Y ML
Sbjct: 651 HSFNAEDKSHPKMDEIYEML 670



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 212/417 (50%), Gaps = 12/417 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCK--AFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           H+ ++K G     +  NQ+L  Y +          ++FDE+  R+ V+WN L++     G
Sbjct: 14  HASLLKSGFAAP-TPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASG 72

Query: 144 GNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            +   +   R M    +  +     S LR+   A    +G +L S  LK G   N F +S
Sbjct: 73  AHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+D+Y KCG V DAR+VFD +  R+ V WN +++ Y  +     A+ +F  M  EG+  
Sbjct: 133 ALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVP 192

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  TF+SL+ +     S  L  Q+HG ++K    L + V  + +  Y++ G++ D+ R+F
Sbjct: 193 DEATFASLLTAVEG-PSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIF 251

Query: 322 DGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLS- 378
           DG+   ++++SWN M+  +  NG   EA+K    M+Q S   PD  +  SI+SSC     
Sbjct: 252 DGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGH 311

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS---IAGALQCFGSVKEPDLVTWTS 435
              + R +H   IK+ ++    + NALI  Y++      +  A +CF S+   D V+W S
Sbjct: 312 DDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNS 371

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           ++  Y+ HGLS ++++ F  M S  VR D  AF   L + S   ++  G +   L+I
Sbjct: 372 MLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVI 428



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 169/313 (53%), Gaps = 12/313 (3%)

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCG--FVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           R H+ +LK GF      +  L+  Y +     +  ARRVFDEV  RD V WN +++ +A 
Sbjct: 12  RSHASLLKSGFAAPTPWNQ-LLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAA 70

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +     A  +   M  +G+  + F   S + S        +G Q+  L +K     +V  
Sbjct: 71  SGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFA 130

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           A++L+D+YAK G + DA +VFDGM  +N VSWN ++ G+ ++GD   A++L  +M +   
Sbjct: 131 ASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGL 190

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PDE T AS+L++    S      Q+H   +K G    L++ NA I AYS+CGS+  + +
Sbjct: 191 VPDEATFASLLTAVEGPSCFL-MHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRR 249

Query: 421 CFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACS-- 476
            F  + +  DL++W +++GAY  +G+  E+++ F +M+  + V PD  +F  ++S+CS  
Sbjct: 250 IFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEH 309

Query: 477 ----HGGLVSEGL 485
               H G V  GL
Sbjct: 310 GHDDHQGRVIHGL 322



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S AL+ S++   LQ GKQ+H  ++  G  +   + + ++ +Y K    DD  K F+E  
Sbjct: 404 FSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD 463

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V WN +I G    G   NV   F  ML     LDHITF  L+ +C  A  ++ G  
Sbjct: 464 KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSE 523

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV 235
            L++   K G  L     +  VDLYG+ G ++ A+++ D +    D ++W  ++
Sbjct: 524 ILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 295/543 (54%), Gaps = 7/543 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S ALK   +    + G++LH  ++K G  +   + N ++ +Y K    ++  K+FD +  
Sbjct: 127 SLALKACVRSADFRYGRRLHCDVVKAGGADGF-VMNSLVDMYAKAGDLENARKVFDRVPE 185

Query: 127 RNIVTWNTLISGIINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
           RN+V+W +++SG I  G    G V   F  M  DNV     T  S+L AC     +  GR
Sbjct: 186 RNVVSWTSMLSGSIQNGIAEEGLV--LFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGR 243

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H  ++K G   N F+S++L+D+Y KC  VEDARRVFDE+   D+VLW  M+  Y  N 
Sbjct: 244 WIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNK 303

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F   +   +  +  T ++++++   L    LGR +H + +K       +V  
Sbjct: 304 RPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRN 363

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVDMYAK   + +A  +F  +  K+VV+WN+M+ G+ +NG   E++ L   M      P
Sbjct: 364 ALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISP 423

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D +++ + LS+C  L+     +  H YAIK    + + +  AL+N YSKC  +  A + F
Sbjct: 424 DAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVF 483

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + + + VTW+++IG Y   G S  SI++F +ML   + P+ + F  +LSACSH G+V+
Sbjct: 484 NDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVT 543

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
            G  YF+ M   ++I P  +HY C+ D++ R G L EA + + +MPI+      G+F+  
Sbjct: 544 AGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHG 603

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           CK+H  +   + A +K+  L P  P  Y L+SN+Y S   W     +R+ M++    K+P
Sbjct: 604 CKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLP 663

Query: 603 GCS 605
           GCS
Sbjct: 664 GCS 666



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 228/448 (50%), Gaps = 17/448 (3%)

Query: 33  TITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKL 92
           +I N    +  VL +++R    +H S ++  S     L   A  G L QG+ +H  ++K 
Sbjct: 198 SIQNGIAEEGLVLFNEMRQD-NVHPSEYTMVSV----LAACAMLGGLHQGRWIHGSVIKY 252

Query: 93  GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP---- 148
           GL     +   +L +Y KC+  +D  ++FDE+   +IV W  +I G      N  P    
Sbjct: 253 GLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQ---NKRPLDAL 309

Query: 149 -YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
             F      ++  + +T  +++ A  Q   + +GR +H+  +K+G   +  V +ALVD+Y
Sbjct: 310 QLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMY 369

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
            KC  + +A  +F  +L +D+V WN M++ Y+ N + + ++ +FN MR++G+  D  +  
Sbjct: 370 AKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVV 429

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           + +++C  L    +G+  H   IK +F  ++ V T+L+++Y+K  ++  A RVF+ MT +
Sbjct: 430 NALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDR 489

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-V 386
           N V+W+ M+ G+G  GD   ++ L  +ML+ +  P+EV   SILS+C    +    ++  
Sbjct: 490 NSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYF 549

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGL 445
            + A    +   +     +++  ++ G++  AL+   ++  +  +  W S +     H  
Sbjct: 550 DSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSR 609

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            +   E  +KM   A+ P++  F  ++S
Sbjct: 610 LEFGEEAIKKMA--ALHPETPDFYVLMS 635


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 192/609 (31%), Positives = 317/609 (52%), Gaps = 31/609 (5%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           + S Y+  LK  A    L+ G QLH+H +K        ++   L +Y KC    D ++LF
Sbjct: 281 SQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLF 340

Query: 122 DEMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D     N+ ++N +I+G    + G      FR++   ++  D I+ +  LRAC     + 
Sbjct: 341 DMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLS 400

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G +LH    K  F  N  V++A +D+YGKC  +++A RVFDE+  +D V WN +++ + 
Sbjct: 401 EGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHE 460

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N      + +   M   GM+ D +TF S++ +C    S   G +IH  ++K     +  
Sbjct: 461 QNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPY 519

Query: 300 VATSLVDMYAKNGNIDDA----CRVFDGMTAKN-----------------------VVSW 332
           + +SLVDMY+K G ID+A     ++F G+   N                       +VSW
Sbjct: 520 IGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSW 579

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++ G+       +A +    M++    PD+ T +++L +C +L+     +Q+HA+ IK
Sbjct: 580 NAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIK 639

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
             +Q  + I + L++ YSKCG++  +   F      D VTW ++I  YA HG+ +E+I++
Sbjct: 640 KELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKL 699

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           FE M+   + P+   F+ +L AC+H GLV  GL YF++M  +Y + P  EHY+ + D+LG
Sbjct: 700 FESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILG 759

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH-GSIGLAKWAAEKLLELEPSKPVNYA 571
           + G + +A +L+  MP E         + ACK++  ++  A+ AA  LL L+P     Y 
Sbjct: 760 KSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQDSSTYI 819

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           L+SN+YA    W   + LR  MR +   K PGCSW+EI  E HTF+  D++HP+   +Y 
Sbjct: 820 LLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIRDEFHTFLVGDKAHPRWKEIYN 879

Query: 632 MLCTVFGLM 640
            L  ++  M
Sbjct: 880 GLALIYNEM 888



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 243/498 (48%), Gaps = 35/498 (7%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           HE   ++ + +S   K  AK    + GKQ H+H++  G    + + N +L +Y+ C    
Sbjct: 42  HEKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLG 101

Query: 116 DMEKLFDEMRVRNIVTWNTLI-------------------------------SGIINCGG 144
              KLFD M +R++V+WN +I                               SG +  G 
Sbjct: 102 YATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGE 161

Query: 145 NV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
           N+     F  M    V  D+ +F+ +L+ C   ++ ++G ++H   L++G+  +    SA
Sbjct: 162 NLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSA 221

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D+Y KC  ++++  VF  +  ++ + W+ +++    N   DG + +F  M+  G+   
Sbjct: 222 LLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVS 281

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
              ++S++ SC TL   +LG Q+H   +K  F  D +V T+ +DMYAK  N+ DA R+FD
Sbjct: 282 QSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFD 341

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
                N+ S+N M+ G+ Q  +G  A+ L R + + S   DE++L+  L +C ++    E
Sbjct: 342 MSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSE 401

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
             Q+H  A K+     + + NA I+ Y KC ++  A + F  +   D V+W +II A+  
Sbjct: 402 GLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQ 461

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +    +++ +   ML   + PD   F  VL AC+ G  ++ G+   +  I    +  +  
Sbjct: 462 NEERSKTLNILVSMLRSGMEPDEYTFGSVLKACA-GDSLNHGME-IHTTIVKLGMASNPY 519

Query: 503 HYTCLTDLLGRVGLLVEA 520
             + L D+  + G++ EA
Sbjct: 520 IGSSLVDMYSKCGMIDEA 537


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 181/535 (33%), Positives = 291/535 (54%), Gaps = 3/535 (0%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD-NV 158
             +L++Y K     D  ++FD M  RN  +W+T+++G     C       FR ML +   
Sbjct: 157 TSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPS 216

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
                   ++L A      + +G ++H  I+K G      V ++LV +Y K G +  A  
Sbjct: 217 EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFH 276

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+    R+ + W+ M++ YA N   D A+++F+ M   G     FTF  ++N+   LG+
Sbjct: 277 VFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGA 336

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
             +G+Q HGL++K  F++ + V ++LVDMYAK G I DA   FD +   ++V W  MV G
Sbjct: 337 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSG 396

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             QNG+  EA+ L   M +    P + T+AS L +C  ++     +Q+H   +K G+   
Sbjct: 397 HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLG 456

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             + +AL   YSKCG++   +  F  + + D++ W SII  ++ +G    ++++FE+M  
Sbjct: 457 APVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKM 516

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
               PD+I F+ +L ACSH GLV  G  YF+LM  DY + P  +HY C+ D+L R G+L 
Sbjct: 517 EGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLK 576

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
           EA D + S+ I+  +      +GAC+      +  +A E+L+EL       Y L+SN+YA
Sbjct: 577 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYA 636

Query: 579 SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           S+R W DV R+R +MR    +K PGCSW+E+   +H FV  ++ HP+A ++ A L
Sbjct: 637 SQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQL 691


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 311/567 (54%), Gaps = 7/567 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  +  G +  G+Q+H  ++K G    + +   ++ +Y +   FD+ EK+F+ +  +++
Sbjct: 17  LQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGVGCKDL 76

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLDNVRLD--HITFNSLLRACVQADDIEVGRRLHSF 187
              N +I      G         + L +V LD    TF +++  C    ++E G++LH  
Sbjct: 77  RCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC----NVEEGKQLHGL 132

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K G  L   V +A++ +YGK G VE+A R+F  +  ++L+ W  ++S Y  N  G+ A
Sbjct: 133 AVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTRNGYGEKA 192

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           +  F  +R  G++ D    +++++ C    +  LG QIHGLVIK  +  D+ + T+L+D+
Sbjct: 193 VDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDL 252

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE-AVKLLRDMLQGSFCPDEVT 366
           YAK  N   A  VF+G++ ++  S+N ++VGF +N    E  +  L  +      PD V+
Sbjct: 253 YAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVS 312

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            + +LS   + +   + R +HAY+IK G    +S+ NALI  Y+KCG +  A Q F S+ 
Sbjct: 313 FSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMS 372

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             D ++W +II AY+ HG  ++++ ++++M      PD I  L +L AC++ GL  +GL 
Sbjct: 373 ANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLH 432

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
            FN M S Y I P  EHY C+ DLLGR G L +A D++   P    +      +  CK+ 
Sbjct: 433 LFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLWRTLVNVCKLC 492

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           G + L K A++ LL+L P +  +Y LVSN+YA E    + +++R  M+D    K  G SW
Sbjct: 493 GDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVRTTMKDLKLSKEAGSSW 552

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +EI   +H FV+S   HP+++ +YA L
Sbjct: 553 VEIDNMVHYFVASGTDHPESIEIYARL 579



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           +L+AC    D+ +G ++H F++K GF  N FV ++L+ +Y + G  ++A +VF+ V C+D
Sbjct: 16  ILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGVGCKD 75

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           L   N M+  Y        AI VF  +   G+  + +TF++++++C      + G+Q+HG
Sbjct: 76  LRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCNV----EEGKQLHG 131

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           L +K    L   V  +++ MY KNG +++A R+F  M  KN++SW  ++ G+ +NG G +
Sbjct: 132 LAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTRNGYGEK 191

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           AV    ++       D   LA+IL  C          Q+H   IK G    ++I  ALI+
Sbjct: 192 AVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALID 251

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSI 466
            Y+KC +   A   F  +      ++ +I+  +  +  ++E   VF   L  A ++PDS+
Sbjct: 252 LYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSV 311

Query: 467 AFLEVLS-ACSHGGLV-SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           +F  +LS + +   LV   GL  +++       +  S     L  +  + G++ +AY   
Sbjct: 312 SFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVS---NALITMYAKCGIVEDAYQAF 368

Query: 525 ASMPIEPRSDTLGAFIGACKVHG 547
            SM       +  A I A  +HG
Sbjct: 369 NSMSAND-CISWNAIISAYSLHG 390



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G K +  T   ++ +C  +G   LG QIHG VIK  F+ +V V TSL+ MY+++GN D+A
Sbjct: 5   GEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEA 64

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +VF+G+  K++   N M++ +G+ G  + A+ +   ++     P++ T  +I+S+C   
Sbjct: 65  EKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCNVE 124

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
               E +Q+H  A+K GV    S+ NA+I  Y K G +  A + F  + + +L++WT++I
Sbjct: 125 ----EGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALI 180

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
             Y  +G  +++++ F ++    V  DS     +L  CS 
Sbjct: 181 SGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSE 220



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 123/295 (41%), Gaps = 55/295 (18%)

Query: 35  TNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGL 94
            ++ + D  V  SQLR +G   +S       +S+ L +SA    L +G+ LH++ +K G 
Sbjct: 287 NDSNEEDPMVFLSQLRLAGIKPDSVS-----FSRLLSLSANRASLVKGRGLHAYSIKTGF 341

Query: 95  CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFRR 152
              +S+ N ++ +Y KC   +D  + F+ M   + ++WN +IS   +   G      ++ 
Sbjct: 342 AGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQE 401

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF-ILKVGFGLNCFVS--SALVDLYGK 209
           M       D IT   +L+AC  +   E G  LH F  ++  +G+   +   + +VDL G+
Sbjct: 402 MEEKGFTPDEITILVILQACTYSGLSEDG--LHLFNTMESKYGIQPLLEHYACMVDLLGR 459

Query: 210 CGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
            G++  A  + +        +LW                                    +
Sbjct: 460 AGYLSQAMDIINRSPFSESTLLWR-----------------------------------T 484

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV---DMYAKNGNIDDACRV 320
           LVN C   G   LG+    L  K   DL    A S V   ++YA  G ID+A +V
Sbjct: 485 LVNVCKLCGDLNLGK----LASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKV 535


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 186/575 (32%), Positives = 313/575 (54%), Gaps = 7/575 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S+ LK  A       G+Q+H  ++K G    + + + ++ +Y KC+  +D    F E+ 
Sbjct: 50  FSRLLKGIASAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEIL 109

Query: 126 VRNIVTWNTLISGIINCGGNVTPYFRRMLLD---NVRLDHITFNSLLRACVQADDIEVGR 182
             N V+WN LI+G +      T ++   L++    V +D  TF  LL          + +
Sbjct: 110 EPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLK 169

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALN 241
           ++H+ +LK+G      + +A++  Y  CG V DA+RVFD +   +DL+ WN M++  + +
Sbjct: 170 QVHAKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKH 229

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A  +F  M    ++ D +T++ +V++C        G+ +HGLVIK+  +    V+
Sbjct: 230 EQKESAFELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVS 289

Query: 302 TSLVDMYAK--NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
            +L+ MY +   G + DA  +F+ +  K++VSWN+++ GF QNG   +AVK  R +   +
Sbjct: 290 NALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSN 349

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D+   +++L SC  L+     +Q HA A K+  ++   + ++LI  YSKCG I  A 
Sbjct: 350 IEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENAR 409

Query: 420 QCFGSVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           +CF  +    + + W ++I  YA HG  + S+++F +M +  V+ D + F  +L+ACSH 
Sbjct: 410 KCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHT 469

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL+ EGL   N M   Y I P  EHY    DLLGR GL+ +  +L+ SMP+ P    L  
Sbjct: 470 GLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKT 529

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
           F+G C+  G I +A   A  LLE+EP     Y  +S++Y+  + W + A ++KMM++   
Sbjct: 530 FLGVCRACGEIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGV 589

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            KVPG SWIEI  +++ F + DRSH  +  +Y M+
Sbjct: 590 KKVPGWSWIEIRNQVNAFNAEDRSHSLSKEIYLMI 624



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 194/364 (53%), Gaps = 6/364 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           +LFDEM  R+ V+WNT+ISG  +CG   N    F  M      +D  +F+ LL+    A 
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
             ++G ++H  ++K G+  N +V S+LVD+Y KC  VEDA   F E+L  + V WN +++
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIA 121

Query: 237 CYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
            +        A  +  LM ++  +  D  TF+ L+          L +Q+H  V+K   +
Sbjct: 122 GFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE 181

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            ++ +  +++  YA  G + DA RVFDG+  +K+++SWN+M+ G  ++     A +L  +
Sbjct: 182 HEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTE 241

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK--C 412
           M +     D  T   I+S+C         + +H   IK G++   S+ NALI+ Y +   
Sbjct: 242 MHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPT 301

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G +  AL  F S+K  DLV+W SI+  ++ +GLS+++++ F  + S  +  D  AF  VL
Sbjct: 302 GVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVL 361

Query: 473 SACS 476
            +CS
Sbjct: 362 RSCS 365



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 155/299 (51%), Gaps = 17/299 (5%)

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           R+FDE+  RD V WN M+S Y      + +  +F  M+  G   D ++FS L+    +  
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
              LG Q+HGLV+K  ++ +V V +SLVDMYAK   ++DA   F  +   N VSWN ++ 
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIA 121

Query: 338 GFGQNGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
           GF Q  D + A  LL  M ++ +   D+ T A +L+           +QVHA  +K G++
Sbjct: 122 GFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE 181

Query: 397 AFLSIENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
             ++I NA+I++Y+ CG ++ A + F G     DL++W S+I   + H   + + E+F +
Sbjct: 182 HEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTE 241

Query: 456 MLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYF----NLMISDYHILP 499
           M  + +  D   +  ++SACS           HG ++ +GL       N +IS Y   P
Sbjct: 242 MHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFP 300


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 280/509 (55%), Gaps = 32/509 (6%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARR 218
           LD  +F  LL+A  +   + +G  +H    K GF   + F+ SAL+ +Y  CG + DAR 
Sbjct: 113 LDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARF 172

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +FD++  RD+V WN+M+  Y+ N   D  + ++  M+  G + D     +++++C   G+
Sbjct: 173 LFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGN 232

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYA----------------------------- 309
              G+ IH  +    F +   + TSLV+MYA                             
Sbjct: 233 LSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSG 292

Query: 310 --KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
             K G + DA  +FD M  K++V W+ M+ G+ ++    EA++L  +M +    PD++T+
Sbjct: 293 YAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITM 352

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S++S+C ++    + + +H YA KNG    L I NALI+ Y+KCG++  A + F ++  
Sbjct: 353 LSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPR 412

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            ++++W+S+I A+A HG +  +I +F +M    + P+ + F+ VL ACSH GLV EG ++
Sbjct: 413 KNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKF 472

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F+ MI+++ I P  EHY C+ DL  R   L +A +L+ +MP  P     G+ + AC+ HG
Sbjct: 473 FSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHG 532

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
            I L ++AA +LLELEP       ++SN+YA E+ W DV  +RK+M+     K   CS I
Sbjct: 533 EIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRI 592

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           E+  E+H F+ +DR H Q+  +Y  L  V
Sbjct: 593 EVNNEVHVFMMADRYHKQSDEIYKKLDAV 621



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 206/457 (45%), Gaps = 64/457 (14%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEM 124
           +   LK  +K   L  G ++H    K G  +    +Q+ ++ +Y  C    D   LFD+M
Sbjct: 118 FPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKM 177

Query: 125 RVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R++VTWN +I G        +V   +  M       D I   ++L AC  A ++  G+
Sbjct: 178 SHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGK 237

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCG------------------------------- 211
            +H FI   GF +   + ++LV++Y  CG                               
Sbjct: 238 AIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLG 297

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            V+DAR +FD ++ +DLV W+ M+S YA +     A+ +FN M+   +  D  T  S+++
Sbjct: 298 MVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVIS 357

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C  +G+    + IH    K  F   + +  +L+DMYAK GN+  A  VF+ M  KNV+S
Sbjct: 358 ACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVIS 417

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           W++M+  F  +GD   A+ L   M + +  P+ VT   +L +C            HA  +
Sbjct: 418 WSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACS-----------HAGLV 466

Query: 392 KNGVQAFLSIENA------------LINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIG 438
           + G + F S+ N             +++ Y +   +  A++   ++   P+++ W S++ 
Sbjct: 467 EEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMS 526

Query: 439 AYAFHGLSKESIEVFEKMLSH--AVRPDSIAFLEVLS 473
           A   HG     IE+ E   +    + PD    L VLS
Sbjct: 527 ACQNHG----EIELGEFAATRLLELEPDHDGALVVLS 559



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 168/377 (44%), Gaps = 54/377 (14%)

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N ++  ++     +  ++++  +R  G   D F+F  L+ +   L +  LG +IHGL  K
Sbjct: 84  NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASK 143

Query: 292 QSF-DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
             F   D  + ++L+ MYA  G I DA  +FD M+ ++VV+WN M+ G+ QN      +K
Sbjct: 144 FGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLK 203

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L  +M      PD + L ++LS+C         + +H +   NG +    I+ +L+N Y+
Sbjct: 204 LYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYA 263

Query: 411 KCGSIAGALQC-------------------------------FGSVKEPDLVTWTSIIGA 439
            CG++  A +                                F  + E DLV W+++I  
Sbjct: 264 NCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISG 323

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           YA      E++++F +M    + PD I  L V+SAC++ G + +            H   
Sbjct: 324 YAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA--------KWIHTYA 375

Query: 500 DSEHY-------TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GAFIGACKVHGSI- 549
           D   +         L D+  + G LV+A ++  +M   PR + +   + I A  +HG   
Sbjct: 376 DKNGFGRTLPINNALIDMYAKCGNLVKAREVFENM---PRKNVISWSSMINAFAMHGDAD 432

Query: 550 -GLAKWAAEKLLELEPS 565
             +A +   K   +EP+
Sbjct: 433 SAIALFHRMKEQNIEPN 449


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 291/482 (60%), Gaps = 1/482 (0%)

Query: 162 HITF-NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           H++F + +L+ C +   +  G+  H+ IL +G   +   S+ L+++Y KCG V+ AR+VF
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  R LV WN M+     N   + A+ +   M+ EG     FT SS++ +C    +  
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALS 182

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
             + +H   IK + DL+V VAT+L+D+YAK G + DA  VF+ M  ++VV+W++M  G+ 
Sbjct: 183 ECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYV 242

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QN    +A+ L R   +     D+  ++S++ +C  L+   E +QV+A   K+G  + + 
Sbjct: 243 QNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIF 302

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + ++LI+ Y+KCG I  + + F  V++ ++V W ++I   + H  S E + +FEKM    
Sbjct: 303 VASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG 362

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + P+ + F+ VLSAC H GLV +G +YF+LM  ++H+ P+  HY+C+ D L R G + EA
Sbjct: 363 LSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEA 422

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           YDL++ +P    +   G+ + +C+ HG++ LA+ AA+KL ++EP    NY L+SN+YA+ 
Sbjct: 423 YDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAAN 482

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W +VA++RK+++++   K  G SWIEI  ++H F+  +R+HP+ V +Y+ L  V   +
Sbjct: 483 GKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542

Query: 641 EE 642
           ++
Sbjct: 543 QK 544



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 179/318 (56%), Gaps = 2/318 (0%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           SF  + LK+ AK   L QGK  H+ I+ +GL   L   N ++++Y KC + D   ++FDE
Sbjct: 65  SFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDE 124

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  R++V+WNT+I  +   G          +M  +       T +S+L AC     +   
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + LH+F +K    LN FV++AL+D+Y KCG ++DA  VF+ +  R +V W+ M + Y  N
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            + + A+A+F      G+K D F  SS++ +C  L +   G+Q++ L+ K  F  ++ VA
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVA 304

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           +SL+DMYAK G I+++ +VF  +  +NVV WN M+ G  ++    E + L   M Q    
Sbjct: 305 SSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 362 PDEVTLASILSSCGSLSI 379
           P++VT  S+LS+CG + +
Sbjct: 365 PNDVTFVSVLSACGHMGL 382



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 131/242 (54%), Gaps = 3/242 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L + + LH+  +K  +   + +   +L VY KC    D   +F+ M  R++VTW+++ +G
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAG 240

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +           FR+     ++ D    +S++ AC     +  G+++++ + K GF  N
Sbjct: 241 YVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSN 300

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV+S+L+D+Y KCG +E++ +VF +V  R++VLWN M+S  + +      + +F  M+ 
Sbjct: 301 IFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQ 360

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNID 315
            G+  +  TF S++++CG +G  K G++   L+ K+     +V   + +VD  ++ G I 
Sbjct: 361 MGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIF 420

Query: 316 DA 317
           +A
Sbjct: 421 EA 422


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 323/567 (56%), Gaps = 17/567 (2%)

Query: 79  LQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           L +G+++H HI++ GL + K++L N ++++Y KC A D   ++F  +  R+ V+WNT+IS
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 138 GIIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            +     C G +  Y   M    +   +    S L +C     +  G+++H   +K G  
Sbjct: 450 VLDQNGFCEGAMMNYCM-MRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLD 508

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN----VMVSCYALNCLGDGAIAV 250
           L+  VS+ALV +YG CG   ++  +F+ +   D+V WN    VMVS +A       ++ V
Sbjct: 509 LDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTA---ESVEV 565

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F+ M   G+  +  TF +L+++   L   +LG+Q+H +V+K     D  V  +L+  YAK
Sbjct: 566 FSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAK 625

Query: 311 NGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           +G++D   ++F  M+ + + VSWN+M+ G+  NG  +E +  +  M+  +   D  T + 
Sbjct: 626 SGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSI 685

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L++C S++      ++HA+ I++ +++ + +E+AL++ YSKCG I  A + F S+ + +
Sbjct: 686 VLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKN 745

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
             +W S+I  YA HGL ++++E+FE+M  +   PD + F+ VLSACSH GLV  GL YF 
Sbjct: 746 EFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE 805

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC---KVH 546
           +M  D+ ILP  EHY+C+ DLLGR G L++  + +  MP++P +      + AC   K  
Sbjct: 806 MM-EDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDG 864

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
             I L K A+  LLELEP  PVNY L SN YA+   W D A+ R  M      K  G SW
Sbjct: 865 DRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSW 924

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAML 633
           + +   +HTF++ DRSHP    +Y  L
Sbjct: 925 VTLGDGVHTFIAGDRSHPNTKEIYEKL 951



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 177/339 (52%), Gaps = 15/339 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
            L   A    L  G+Q+H   +K GL    S+ N ++ +Y  C A  +  ++F+ M   +
Sbjct: 482 GLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHD 541

Query: 129 IVTWNTLISGIINC---GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           IV+WN+++  +++           F  M+   +  + +TF +LL A      +E+G+++H
Sbjct: 542 IVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVH 601

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNCLG 244
           + +LK G   +  V +AL+  Y K G ++   ++F  +   RD V WN M+S Y  N   
Sbjct: 602 AVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHL 661

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
              +    LM       D  TFS ++N+C ++ + + G ++H   I+   + DV+V ++L
Sbjct: 662 QETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESAL 721

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +DMY+K G ID A +VF+ M+ KN  SWN+M+ G+ ++G G +A+++  +M +   CPD 
Sbjct: 722 LDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDH 781

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           VT  S+LS+C            HA  +  G+  F  +E+
Sbjct: 782 VTFVSVLSACS-----------HAGLVDRGLDYFEMMED 809



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 224/464 (48%), Gaps = 21/464 (4%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           ++LH  ++K GL + L L N ++++Y K        ++FD M  RN V+W  L+SG +  
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 143 GGNVTPY--FRRMLLDN---VRLDHITFNSLLRACVQA--DDIEVGRRLHSFILKVGFGL 195
           G     +  F+ ML +     R    TF S+LRAC  A  D +    ++H  + K  +  
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 196 NCFVSSALVDLYGKC--GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
           N  V +AL+ +YG C  G    A++VFD    RDL+ WN ++S YA          +F  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 254 MRLEG----MKGDYFTFSSLVNSCGTLG-SSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
           M  +     ++ +  TF SL+ +      SS +  Q+   V+K     D+ V ++LV  +
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAF 315

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           A++G +D+A  +F  +  +N V+ N ++VG  +     EAV +     + SF  +  T  
Sbjct: 316 ARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGT-RDSFVVNTDTFV 374

Query: 369 SILSSCGSLSIS----CETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFG 423
            +LS+    SI        R+VH + ++ G +   +++ N L+N Y+KCG+I  A + F 
Sbjct: 375 VLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFR 434

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D V+W +II     +G  + ++  +  M    + P + A +  LS+C+   L++ 
Sbjct: 435 LLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTA 494

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           G +     +  + +  D+     L  + G  G   E++++  SM
Sbjct: 495 GQQVHCDAVK-WGLDLDTSVSNALVKMYGDCGARSESWEIFNSM 537



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 23/289 (7%)

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G      ++H  ++K+    D+ ++  LV++YAK   +  A +VFDGM  +N VSW  +V
Sbjct: 70  GEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLV 129

Query: 337 VGFGQNGDGREAVKLLRDML-QGS-FC-PDEVTLASILSSC--GSLSISCETRQVHAYAI 391
            G+  +G   EA ++ + ML +GS F  P   T  S+L +C      +     QVH    
Sbjct: 130 SGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVS 189

Query: 392 KNGVQAFLSIENALINAYSKC--GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
           K    +  ++ NALI+ Y  C  G    A Q F +    DL+TW +++  YA  G    +
Sbjct: 190 KTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVST 249

Query: 450 IEVFEKML----SHAVRPDSIAFLEV-----LSACSHGGLVSEGLRYFNL-MISDYHILP 499
             +F  ML    +  +RP+   F  +     LS+CS G L     R       SD ++  
Sbjct: 250 FTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYV-- 307

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
                + L     R G+L EA D+  ++         G  +G  K H S
Sbjct: 308 ----GSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCS 352



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A    L++G ++H+  ++  L + + +++ +L +Y KC   D   K+F+ M 
Sbjct: 683 FSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMS 742

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N  +WN++ISG      G      F  M  +    DH+TF S+L AC  A  ++ G  
Sbjct: 743 QKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLD 802

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLW-NVMVSC 237
               +   G   +    S ++DL G+ G +   +   + +  + + ++W  V+V+C
Sbjct: 803 YFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVAC 858


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 306/570 (53%), Gaps = 30/570 (5%)

Query: 61  SAHSFYSQALKVSAKF-----GFLQQ---------GKQLHSHIMKLGLCNKLSLQNQVLH 106
           S  SF S++   S K       FLQ+         G  +H+  +K  L   L   N VL+
Sbjct: 199 SRKSFVSKSENSSVKLEDFYVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLN 258

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD-NVRLDHI 163
            YVKC       +LFDEM  RN+V+W+ +I+G +  G        F RM  D  +  +  
Sbjct: 259 FYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEF 318

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T  S L AC     +    ++++FI+++G+G N F+ +A +    +   + +A  VF+  
Sbjct: 319 TLVSALHACSLTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESC 378

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNL------MRLEGMKGDYFTFSSLVNSCGTLG 277
           L +D V WN M++ Y         +A F L      M LE +K D FTF+S++     L 
Sbjct: 379 LSKDTVSWNAMMAGYL-------QLAYFELPKFWRRMNLESVKPDNFTFASILTGLAALS 431

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             +LG Q+HG ++K  +  D+ V  SL DMY KN  + D  + FD M++ +V SW  M  
Sbjct: 432 EFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAA 491

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G  Q G+  +A+K++ +M       ++ TLA+ L+SC +L+   E ++ H   IK G   
Sbjct: 492 GCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDV 551

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + ++NAL++ Y+KCG +  A   F S+ E  +V+WT++I  +A +G +KE++++F++M 
Sbjct: 552 DVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMR 611

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
                P+ I F+ VL+ACS GG + E  +YF+ M +D+ I P  +HY C+ +LLGR G +
Sbjct: 612 KGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCI 671

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA DL+  MP +P S      +GAC VHG I   K AAE  L L+ + P  Y L+SN++
Sbjct: 672 KEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMF 731

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           A    W  V  LR++M      KVPG SW+
Sbjct: 732 AGGDNWDSVGILRELMETRDVKKVPGSSWM 761



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 144/325 (44%), Gaps = 45/325 (13%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           ES    +  ++  L   A     + G Q+H  ++K G  N + + N +  +YVK +   D
Sbjct: 411 ESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLD 470

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDN--VRLDHITFNSLLRACVQ 174
             K FDEM   ++ +W  + +G + CG  +        + N  VRL+  T  + L +C  
Sbjct: 471 GFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCAN 530

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              IE G++ H   +K+G  ++  V +AL+D+Y KCG +  A  VF  +  R +V W  M
Sbjct: 531 LASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTM 590

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +  +A N     A+ +F+ MR    + ++ TF  ++N+C                     
Sbjct: 591 IMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNAC--------------------- 629

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-----WNTMVVGFGQNGDGREAV 349
                         ++ G ID+A + F  M+A + ++     +  MV   G+ G  +EA 
Sbjct: 630 --------------SQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAE 675

Query: 350 KLLRDMLQGSFCPDEVTLASILSSC 374
            L+   LQ  F P  +   ++L +C
Sbjct: 676 DLI---LQMPFQPGSLVWQTLLGAC 697


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 315/581 (54%), Gaps = 6/581 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+Q+    +K  +   L + N  L ++ K  A DD + LF+ +  ++ V+WN L+ G+ +
Sbjct: 320 GRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTH 379

Query: 142 CGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              +       + M LD V  D ++F +++ AC      E G+++H   +K     N  V
Sbjct: 380 NEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAV 439

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            S+L+D Y K G VE  R+V  +V    +V  NV+++    N   D AI +F  +  +G+
Sbjct: 440 GSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGL 499

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNIDDAC 318
           K   FTFSS+++ C  L SS +G+Q+H   +K  F + D  V  SLV  Y K    +DA 
Sbjct: 500 KPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDAN 559

Query: 319 RVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
           ++   M   KN+V W  +V G+ QNG   +++     M      PDEVT ASIL +C  +
Sbjct: 560 KLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEM 619

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSI 436
           +   + +++H   IK+G  ++ +  +A+I+ YSKCG I  + + F  +K + D+  W S+
Sbjct: 620 TALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSM 679

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  +A +G + E++ +F+KM    ++ D + FL VL AC+H GL+SEG  YF+ M   Y 
Sbjct: 680 ILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYG 739

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I+P  +HY C  DLLGR G L EA +++  +P  P       ++ AC++H      + AA
Sbjct: 740 IMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAA 799

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           ++L+ELEP     Y L+SN+YA+   W +    R+ MR+    K PGCSWI +  +   F
Sbjct: 800 KELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGNKTSLF 859

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEE-NNVSGHCNVLDKEM 656
           +  D++H  A+ +Y ML  +  +M + ++V  +  ++  EM
Sbjct: 860 LVQDKNHLGALRIYEMLDNLTRMMHKYDDVENYDMLISAEM 900



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 242/470 (51%), Gaps = 25/470 (5%)

Query: 43  SVLSSQLRNSGTIHE-----------STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           +V+S   + SG  HE                 S ++  L  +A      +G+Q+H+  ++
Sbjct: 169 AVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVR 228

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--- 148
            GL   + + + ++++Y KC    D   +FD    +N+V WN +++G++     V     
Sbjct: 229 HGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQM 288

Query: 149 --YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
             Y +R+ L+    D  T+ S+L AC   D   +GR++    +K     + FV++A +D+
Sbjct: 289 FLYMKRLGLE---ADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDM 345

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           + K G ++DA+ +F+ +  +D V WN ++     N   + AI +   M L+G+  D  +F
Sbjct: 346 HSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSF 405

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           ++++N+C  + +++ G+QIH L +K S   +  V +SL+D Y+K+G+++   +V   + A
Sbjct: 406 ATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDA 465

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            ++V  N ++ G  QN    EA+ L + +L+    P   T +SILS C  L  S   +QV
Sbjct: 466 SSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQV 525

Query: 387 HAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD---LVTWTSIIGAYAF 442
           H Y +K+G +    S+  +L+  Y K      A +    ++ PD   LV WT+I+  YA 
Sbjct: 526 HCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLL--IEMPDHKNLVEWTAIVSGYAQ 583

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +G S +S+  F +M S+ V PD + F  +L ACS    +S+G     L+I
Sbjct: 584 NGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLII 633



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 217/417 (52%), Gaps = 16/417 (3%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK-----AFDDMEKLFDEMRV-RN 128
           + G  Q+   L + + K+G     S  ++V  V V C        +D   L   M    +
Sbjct: 109 RAGRFQEAVCLFTRMEKMG-----SSPDRVTCVAVVCALTALGRLEDARTLLHRMPAPSS 163

Query: 129 IVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            V WN +ISG     G    V   ++ M    +     TF S+L A   A     GR++H
Sbjct: 164 TVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVH 223

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +  ++ G   N FV S+L++LY KCG + DA  VFD    +++V+WN M++    N    
Sbjct: 224 AAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQV 283

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            AI +F  M+  G++ D FT+ S++ +C  L S  LGRQ+  + IK   D  + VA + +
Sbjct: 284 EAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATL 343

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DM++K G IDDA  +F+ +T K+ VSWN ++VG   N +  EA+ +L+ M      PDEV
Sbjct: 344 DMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEV 403

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           + A+++++C ++  +   +Q+H  A+K+ + +  ++ ++LI+ YSK G +    +    V
Sbjct: 404 SFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQV 463

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
               +V    +I     +    E+I++F+++L   ++P S  F  +LS C+  GL+S
Sbjct: 464 DASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCT--GLLS 518



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 185/412 (44%), Gaps = 39/412 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G L  GKQ H    K GL +       ++++Y +C    D  ++F  + + + 
Sbjct: 38  LSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVFGGISLPDT 97

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V W ++ISG    G        F RM       D +T       CV              
Sbjct: 98  VCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVT-------CVA------------- 137

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNC-LGD 245
                      V  AL  L    G +EDAR +   +      V WN ++S YA    +  
Sbjct: 138 -----------VVCALTAL----GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEH 182

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
               ++  MR  G+     TF+S++++     +   GRQ+H   ++   D +V V +SL+
Sbjct: 183 EVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLI 242

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           ++YAK G I DA  VFD    KNVV WN M+ G  +N    EA+++   M +     DE 
Sbjct: 243 NLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEF 302

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T  S+L +C  L   C  RQV    IKN + A L + NA ++ +SK G+I  A   F  +
Sbjct: 303 TYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLI 362

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
              D V+W +++     +   +E+I + + M    V PD ++F  V++ACS+
Sbjct: 363 TYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSN 414



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 146/322 (45%), Gaps = 37/322 (11%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           VR D     + L AC +   +  G++ H    K G G   F ++ALV++Y +CG V DAR
Sbjct: 27  VRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDAR 86

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           RVF  +   D V W  M+S Y        A+ +F  M   G   D  T  ++V +   L 
Sbjct: 87  RVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL- 145

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA-KNVVSWNTMV 336
                                             G ++DA  +   M A  + V+WN ++
Sbjct: 146 ----------------------------------GRLEDARTLLHRMPAPSSTVAWNAVI 171

Query: 337 VGFG-QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
            G+  Q+G   E   L +DM      P   T AS+LS+  + +   E RQVHA A+++G+
Sbjct: 172 SGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGL 231

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            A + + ++LIN Y+KCG I  A+  F    E ++V W +++     +    E+I++F  
Sbjct: 232 DANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLY 291

Query: 456 MLSHAVRPDSIAFLEVLSACSH 477
           M    +  D   ++ VL AC+H
Sbjct: 292 MKRLGLEADEFTYVSVLGACAH 313



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 9/233 (3%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H     ++  LK  ++   L  GK++H  I+K G  +  +  + ++ +Y KC       +
Sbjct: 603 HPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFE 662

Query: 120 LFDEMRVRNIVT-WNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
            F E++ +  +T WN++I G    G        F++M    ++ D +TF  +L AC  A 
Sbjct: 663 AFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAG 722

Query: 177 DIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLW-N 232
            I  GR     + KV +G+   V   +  +DL G+ G +++A+ V +E+  R D V+W  
Sbjct: 723 LISEGRHYFDSMSKV-YGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWAT 781

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGD-YFTFSSLVNSCGTLGSSKLGRQ 284
            + +C        G IA   L+ LE      Y   S++  + G    +K+ R+
Sbjct: 782 YLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMARE 834



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%)

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           V+  R    G   PD+  LA+ LS+C  L      +Q H  A K G+ +      AL+N 
Sbjct: 16  VRARRCSAGGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNM 75

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y++CG +  A + FG +  PD V W S+I  Y   G  +E++ +F +M      PD +  
Sbjct: 76  YARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTC 135

Query: 469 LEVLSACSHGGLVSEGLRYFNLM 491
           + V+ A +  G + +     + M
Sbjct: 136 VAVVCALTALGRLEDARTLLHRM 158


>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730
 gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana]
 gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]
          Length = 565

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/551 (33%), Positives = 315/551 (57%), Gaps = 7/551 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y +ALK+ +     +Q   +H + +  G C+ L L++ ++ +Y+K        KLFD 
Sbjct: 14  SLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDR 73

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +  R++V+W  +IS    CG   +    F+ M  ++V+ +  T+ S+L++C     ++ G
Sbjct: 74  ISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEG 133

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++H  + K     N  V SAL+ LY +CG +E+AR  FD +  RDLV WN M+  Y  N
Sbjct: 134 MQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTAN 193

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              D + ++F LM  EG K D FTF SL+ +   +   ++  ++HGL IK  F     + 
Sbjct: 194 ACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALI 253

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG-QNGDGREAVKLLRDMLQGSF 360
            SLV+ Y K G++ +A ++ +G   ++++S   ++ GF  QN    +A  + +DM++   
Sbjct: 254 RSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKT 313

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGAL 419
             DEV ++S+L  C +++     RQ+H +A+K+    F +++ N+LI+ Y+K G I  A+
Sbjct: 314 KMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAV 373

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +KE D+ +WTS+I  Y  HG  +++I+++ +M    ++P+ + FL +LSACSH G
Sbjct: 374 LAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTG 433

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP--IEPRSDTLG 537
               G + ++ MI+ + I    EH +C+ D+L R G L EAY L+ S    +   S T G
Sbjct: 434 QTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWG 493

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           AF+ AC+ HG++ L+K AA +LL +EP KPVNY  +++VYA+   W +    RK+M+++ 
Sbjct: 494 AFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLMKESG 553

Query: 598 D-HKVPGCSWI 607
             +K PG S +
Sbjct: 554 SCNKAPGYSLV 564


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/512 (33%), Positives = 282/512 (55%), Gaps = 41/512 (8%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           +LL+ C++   ++ G+++H+ I K    +  ++S+ L+D+Y KCG + DA +VFDE++ R
Sbjct: 124 TLLKFCLKQRALKEGKQVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHR 182

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC------------- 273
           DL  WN+M+S Y      + A  +F+ M       D F+++++++ C             
Sbjct: 183 DLCSWNIMISGYVKGGNFEKARNLFDKMP----NRDNFSWTAIISGCVQHNRPEEALELY 238

Query: 274 -----------------------GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
                                    + S  +G++IHG +++   D D +V  SL+DMY K
Sbjct: 239 RLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGK 298

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G+I++A  +FD M  ++VVSW TM+  + +NG   E   L R ++  +  P++ T A +
Sbjct: 299 CGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGV 358

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L++C  L+     +Q+HAY ++ G  +F S  +AL++ YSKCG I  A   F  + +PDL
Sbjct: 359 LNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDL 418

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
            +WTS++  YA HG   +++  FE +L    +PD IAF+ VLSAC+H GLV +GL YF+ 
Sbjct: 419 FSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHS 478

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           +   + +    +HY C+ DLL R G   EA  ++  MPI+P      A +G C++HG++ 
Sbjct: 479 IKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLE 538

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           LAK AA+ L E+EP  P  Y  ++N+YAS     + A +R+ M      K PG SWIEI 
Sbjct: 539 LAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIR 598

Query: 611 GEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            E+H F   D SHP++  +   L  +   M+E
Sbjct: 599 REVHVFSVGDNSHPKSKEILEYLSELSKRMKE 630



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 213/421 (50%), Gaps = 45/421 (10%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y   LK   K   L++GKQ+H+HI   G    L + N++L +Y KC +  D EK+FDE
Sbjct: 120 SIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDE 178

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV-RLDHITFNSLLRACVQADDIE--- 179
           M  R++ +WN +ISG +  GGN      R L D +   D+ ++ +++  CVQ +  E   
Sbjct: 179 MVHRDLCSWNIMISGYVK-GGNFEK--ARNLFDKMPNRDNFSWTAIISGCVQHNRPEEAL 235

Query: 180 ---------------------------------VGRRLHSFILKVGFGLNCFVSSALVDL 206
                                            +G+++H  I+++G   +  V  +L+D+
Sbjct: 236 ELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDM 295

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFT 265
           YGKCG +E+AR +FD++  RD+V W  M+  Y  N   +   A+F +LM    M  D FT
Sbjct: 296 YGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND-FT 354

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F+ ++N+C  L +  LG+QIH  +++  FD     A++LV MY+K G+I++A  VF+ + 
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILP 414

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
             ++ SW +++VG+ Q+G   +A+     +L+    PD +    +LS+C    +  +  +
Sbjct: 415 QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLE 474

Query: 386 -VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             H+   K+G+   +     +I+  ++ G    A      +  +PD   W +++G    H
Sbjct: 475 YFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIH 534

Query: 444 G 444
           G
Sbjct: 535 G 535



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 177/364 (48%), Gaps = 10/364 (2%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T  I+   +H+R   + +L      H+ + S     S AL  SA    L  GK++H HIM
Sbjct: 219 TAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIM 278

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY- 149
           ++GL +   +   +L +Y KC + ++   +FD+M  R++V+W T+I   +  G     + 
Sbjct: 279 RMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFA 338

Query: 150 -FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            FR ++  N+  +  TF  +L AC      ++G+++H+++++VGF      +SALV +Y 
Sbjct: 339 LFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYS 398

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KCG +E+A+ VF+ +   DL  W  ++  YA +   D A+  F L+   G K D   F  
Sbjct: 399 KCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIG 458

Query: 269 LVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           ++++C   G    G +  H +  K      +     ++D+ A+ G   +A  + + M  K
Sbjct: 459 VLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIK 518

Query: 328 -NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE----VTLASILSSCGSLSISCE 382
            +   W  ++ G   +G+   A +  + + +    P+     VTLA+I +S G  +    
Sbjct: 519 PDKYIWAALLGGCRIHGNLELAKRAAKSLFE--IEPENPATYVTLANIYASAGMRAEEAN 576

Query: 383 TRQV 386
            R+ 
Sbjct: 577 IRET 580



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           REAV+LL  + +    P      ++L  C       E +QVHA+ IK      L I N L
Sbjct: 105 REAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQVHAH-IKTSGSIGLYISNRL 159

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+KCGS+  A + F  +   DL +W  +I  Y   G  +++  +F+KM +     D+
Sbjct: 160 LDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DN 215

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLM 491
            ++  ++S C       E L  + LM
Sbjct: 216 FSWTAIISGCVQHNRPEEALELYRLM 241


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/495 (35%), Positives = 280/495 (56%), Gaps = 7/495 (1%)

Query: 128 NIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           N  ++N +I G+ N   +       +RRM    ++ D+ T+N +  AC + ++I VGR +
Sbjct: 92  NHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSV 151

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS + KVG   +  +S +L+ +Y KCG V  AR+VFDE+  R  V WN M+S Y+     
Sbjct: 152 HSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRA 211

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M  EG + D  T  S++ +C  LG    GR +  + I +   L   + + L
Sbjct: 212 KDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKL 271

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           + MY K G++D A RVF+ M  K+ V+WN M+  + QNG   EA KL  +M +    PD 
Sbjct: 272 ITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDA 331

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            TL+++LS+CGS+      +++  +A +  +Q  + +   L++ Y KCG I  AL+ F +
Sbjct: 332 GTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEA 391

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   +  TW ++I AYA  G +KE++ +F++M    V P  + F+ VLSAC H GLV +G
Sbjct: 392 MPVKNEATWNAMITAYAHQGHAKEALLLFDQM---PVPPSDVTFIGVLSACVHAGLVDQG 448

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
            RYF+ M S + ++P  EHYT + DLL R GLL EA++ +   P +P    L A +GAC 
Sbjct: 449 CRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLAAILGACH 508

Query: 545 VHGSIGLAKWAAEKLLELEPSKPV-NYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
               + + + A   L+E++ +K   NY + S V A  + W + A++R +MRD    K PG
Sbjct: 509 KRKDVAIREKAMRMLMEMKEAKNAGNYVISSKVLADMKMWDESAKMRALMRDRGVVKTPG 568

Query: 604 CSWIEIAGEIHTFVS 618
           CSWIEI GE+  F++
Sbjct: 569 CSWIEINGELMEFLA 583



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 199/396 (50%), Gaps = 38/396 (9%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +HS + K+GL     + + ++ +Y KC       K+FDE+  R  V+WN++ISG   
Sbjct: 148 GRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSE 207

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G   +    FR+M  +    D  T  S+L AC    D+  GR L    +    GL+ F+
Sbjct: 208 AGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFL 267

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            S L+ +YGKCG ++ ARRVF++++ +D V WN M++ Y+ N     A  +F  M   G+
Sbjct: 268 GSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGV 327

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T S+++++CG++G+ +LG++I     + S   ++ VAT LVDMY K G+I++A R
Sbjct: 328 SPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALR 387

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ M  KN  +WN M+  +   G  +EA+ L   M      P +VT   +LS+C     
Sbjct: 388 VFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQM---PVPPSDVTFIGVLSAC----- 439

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
                 VHA  +  G + F  + +                  FG V  P +  +T+II  
Sbjct: 440 ------VHAGLVDQGCRYFHEMSS-----------------LFGLV--PKIEHYTNIIDL 474

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            +  GL  E+ E  E+      +PD I    +L AC
Sbjct: 475 LSRAGLLDEAWEFMERFPG---KPDEIMLAAILGAC 507



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 137/308 (44%), Gaps = 48/308 (15%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQ----NQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           A  G L  G+ L     K+ +  K+ L     ++++ +Y KC   D   ++F++M  ++ 
Sbjct: 241 AHLGDLTTGRLLE----KMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDR 296

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WN +I+     G +   +  F  M    V  D  T +++L AC     +E+G+R+ + 
Sbjct: 297 VAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETH 356

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
             ++    N +V++ LVD+YGKCG +E+A RVF+ +  ++   WN M++ YA       A
Sbjct: 357 ASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEA 416

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSLVD 306
           + +F+ M +        TF  ++++C   G    G R  H +         +   T+++D
Sbjct: 417 LLLFDQMPVPPSD---VTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKIEHYTNIID 473

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           + ++ G +D+A    +    K                                  PDE+ 
Sbjct: 474 LLSRAGLLDEAWEFMERFPGK----------------------------------PDEIM 499

Query: 367 LASILSSC 374
           LA+IL +C
Sbjct: 500 LAAILGAC 507



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 10/211 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L      G L+ GK++ +H  ++ L + + +   ++ +Y KC   ++  ++F+ M V
Sbjct: 335 STVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPV 394

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLDN--VRLDHITFNSLLRACVQADDIEVG-RR 183
           +N  TWN +I+   + G         +L D   V    +TF  +L ACV A  ++ G R 
Sbjct: 395 KNEATWNAMITAYAHQGHAKEAL---LLFDQMPVPPSDVTFIGVLSACVHAGLVDQGCRY 451

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCYALN 241
            H      G        + ++DL  + G +++A    +    +  +++L  ++ +C+   
Sbjct: 452 FHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLAAILGACHKRK 511

Query: 242 CLGDGAIAVFNLMRLEGMK--GDYFTFSSLV 270
            +     A+  LM ++  K  G+Y   S ++
Sbjct: 512 DVAIREKAMRMLMEMKEAKNAGNYVISSKVL 542


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 264/474 (55%), Gaps = 1/474 (0%)

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           R L    R D  TF   L AC +  D+  G  +       G+  + FV S+L+ LY + G
Sbjct: 98  RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWG 157

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            + DA +VFD +  RD V W+ MV+ +        AI ++  MR +G+KGD      ++ 
Sbjct: 158 AMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQ 217

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C    + ++G  +HG +++    +DV+ ATSLVDMYAKNG +D ACRVF  M  +N VS
Sbjct: 218 ACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS 277

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           W+ M+ GF QNG   EA++L R+M      PD   L S L +C ++      R VH + +
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIV 337

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           +        +  A I+ YSKCGS+A A   F  + + DL+ W ++I     HG  ++++ 
Sbjct: 338 RR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALT 396

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F++M    +RPD   F  +LSA SH GLV EG  +F  M++ + I P  +HY CL DLL
Sbjct: 397 LFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLL 456

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
            R GL+ EA DLL SM  EP      A +  C  +  + L +  A+ +LEL+P      A
Sbjct: 457 ARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLA 516

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           LVSN+YA+ + W  V ++RK+M+D+   K+PGCS IEI G  H F+  D+SHPQ
Sbjct: 517 LVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQ 570



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 235/445 (52%), Gaps = 25/445 (5%)

Query: 42  RSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ 101
           R   +S LR    +  +     + ++ AL   A+ G L+ G+ +       G  + + + 
Sbjct: 87  RGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVR 159
           + +LH+Y +  A  D  K+FD M  R+ VTW+T+++G ++ G   +    +RRM  D V+
Sbjct: 147 SSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D +    +++AC  A ++ +G  +H  +L+ G  ++   +++LVD+Y K G ++ A RV
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  ++ R+ V W+ M+S +A N   D A+ +F  M+  G++ D     S + +C  +G  
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           KLGR +HG ++++ FD + ++ T+ +DMY+K G++  A  +F+ ++ ++++ WN M+   
Sbjct: 327 KLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACC 385

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC--------GSLSISCETRQVHAYAI 391
           G +G G++A+ L ++M +    PD  T AS+LS+         G L   C    V+ + I
Sbjct: 386 GAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGC---MVNHFKI 442

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESI 450
               + ++     L++  ++ G +  A     S+K EP +  W +++       L+ + +
Sbjct: 443 TPAEKHYV----CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGC----LNNKKL 494

Query: 451 EVFEKMLSH--AVRPDSIAFLEVLS 473
           E+ E +  +   ++PD +  L ++S
Sbjct: 495 ELGESIADNILELQPDDVGVLALVS 519


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 313/588 (53%), Gaps = 12/588 (2%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINC 142
           +HS   KLG  +   + + ++  Y  C    D E +F+ +  ++ V W  ++S     +C
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             N    F +M +   + +     S+L+A V    + +G+ +H   +K        V  A
Sbjct: 244 PENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGA 303

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKG 261
           L+D+Y KCG ++DAR  F+ +   D++L + M+S YA +   + A  +F  LMR   +  
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 363

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           +Y + SS++ +C  +     G+QIH   IK   + D+ V  +L+D YAK  ++D + ++F
Sbjct: 364 EY-SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
             +   N VSWNT+VVGF Q+G G EA+ +  +M        +VT +S+L +C S +   
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H    K+       I N+LI+ Y+KCG I  AL+ F  + E D+++W +II  YA
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 542

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            HG + +++E+F++M    V  + I F+ +LS CS  GLV+ GL  F+ M  D+ I P  
Sbjct: 543 LHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           EHYTC+  LLGR G L +A   +  +P  P +    A + +C +H ++ L +++AEK+LE
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 662

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           +EP     Y L+SN+YA+      VA LRK MR+    KVPG SW+EI GEIH F     
Sbjct: 663 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSV 722

Query: 622 SHPQAVHMYAML------CTVFGLMEENNVSGHCNVLDKEMDECTLWL 663
            HP    + AML       +  G + + NV  H   +DKE     LW+
Sbjct: 723 DHPDMRVINAMLEWLNLKTSREGYIPDINVVLHD--VDKEQKTRMLWV 768



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 220/404 (54%), Gaps = 4/404 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           G  + G+ +H H+++ G   +L L   N +L++Y K        +LFD M  RN+V++ T
Sbjct: 73  GDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVT 132

Query: 135 LISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           L+      G        FRR+  +   ++     ++L+  +  D   +   +HS   K+G
Sbjct: 133 LVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG 192

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV S L+D Y  C  V DA  VF+ ++ +D V+W  MVSCY+ N   + A  VF+
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR+ G K + F  +S++ +   L S  LG+ IHG  IK   D +  V  +L+DMYAK G
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +I DA   F+ +   +V+  + M+  + Q+    +A +L   +++ S  P+E +L+S+L 
Sbjct: 313 DIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQ 372

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C ++      +Q+H +AIK G ++ L + NAL++ Y+KC  +  +L+ F S+++ + V+
Sbjct: 373 ACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVS 432

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           W +I+  ++  GL +E++ VF +M +  +    + +  VL AC+
Sbjct: 433 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA 476



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 153/311 (49%), Gaps = 2/311 (0%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           L+ C+   D   GR +H  +++ G    L+ F ++ L+++YGK G +  ARR+FD +  R
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V +  +V  +A     + A A+F  +R EG + + F  ++++     + ++ L   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
               K   D +  V + L+D Y+    + DA  VF+G+  K+ V W  MV  + +N    
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
            A ++   M      P+   L S+L +   L      + +H  AIK        +  AL+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y+KCG I  A   F  +   D++  + +I  YA    ++++ E+F +++  +V P+  
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEY 365

Query: 467 AFLEVLSACSH 477
           +   VL AC++
Sbjct: 366 SLSSVLQACTN 376



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 14/279 (5%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L+       L  GKQ+H+H +K+G  + L + N ++  Y KC   D   K+F  +R 
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N V+WNT++ G      G      F  M    +    +T++S+LRAC     I    ++
Sbjct: 428 ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQI 487

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  I K  F  +  + ++L+D Y KCG++ DA +VF  ++ RD++ WN ++S YAL+   
Sbjct: 488 HCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQA 547

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F+ M    ++ +  TF +L++ C + G        HGL +  S  +D  +  S+
Sbjct: 548 ADALELFDRMNKSNVESNDITFVALLSVCSSTGLVN-----HGLSLFDSMRIDHGIKPSM 602

Query: 305 ------VDMYAKNGNIDDACR-VFDGMTAKNVVSWNTMV 336
                 V +  + G ++DA + + D  +A + + W  ++
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALL 641



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  L+  A    ++   Q+H  I K    N   + N ++  Y KC    D  K+F  + 
Sbjct: 468 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLM 527

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+I++WN +ISG    G   +    F RM   NV  + ITF +LL  C     +  G  
Sbjct: 528 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLS 587

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMV-SCYA 239
           L    +++  G+   +   + +V L G+ G + DA +   ++      ++W  ++ SC  
Sbjct: 588 LFDS-MRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646

Query: 240 LNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
              +  G  +   ++ +E   +  Y   S++  + G+L    L R+
Sbjct: 647 HKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRK 692


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/587 (33%), Positives = 318/587 (54%), Gaps = 10/587 (1%)

Query: 49  LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ--NQVLH 106
           L++S   H   H+      Q LKVSA    L+ GK +H+H++      K ++   N +++
Sbjct: 16  LKSSTVGHPLEHTI-----QLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLIN 70

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRML-LDNVRLDHI 163
           +Y KC        LFD MR RN+V+W  L++G  + G    V   F+ M+ +D +R +  
Sbjct: 71  LYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEY 130

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            F +++ +C  +  +  G + H + LK G   + +V +AL+ +Y +   V+ A  V+ EV
Sbjct: 131 IFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEV 190

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
              D+  +N++++    N     A+ V + M  E +  D  T+ +    C  L   +LG 
Sbjct: 191 PGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGL 250

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+H  + +   + D  V+++++DMY K GNI +A +VF+ +  KNVVSW  ++  + QNG
Sbjct: 251 QVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNG 310

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+    +M      P+E T A +L+SC  +S     + +H    K+G +  + + N
Sbjct: 311 CFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGN 370

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALIN YSK GSI  A + F  +   D +TW+++I   + HGL +E++ VF++ML+    P
Sbjct: 371 ALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECP 430

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
             + F+ VLSAC+H G V EG  Y N ++    I P  EHYTC+  LL + G L EA + 
Sbjct: 431 HYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENF 490

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           + S P++         + AC VH + GL K  AE +L+++P     Y L+SN+YA  + W
Sbjct: 491 MKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRW 550

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
             V ++RK+MR+    K PG SWIEI   IH FVS  ++HP++  +Y
Sbjct: 551 DGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIY 597


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/521 (33%), Positives = 301/521 (57%), Gaps = 4/521 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL-DHITFNSLLRACVQAD 176
           +F   RV +++TWN+++   +N          +  ML  +  + D  TF SLL+ C    
Sbjct: 34  VFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           + +VG+ LH  ++K     + ++ + L+++Y  CG ++ AR +F+ +  R+ V+W  M+S
Sbjct: 94  EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y  N   + A+ ++  M  +G   D  T ++LV++C  L    +G ++H  + +    +
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
             ++ ++LV+MYAK G++  A +VFD ++ K+V +W+ ++ G+ +N    EA++L R++ 
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVA 273

Query: 357 QGS-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            GS   P+EVT+ +++S+C  L      R VH Y  +      +S+ N+LI+ +SKCG I
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDI 333

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + F S+   DL++W S++   A HGL +E++  F  M +  ++PD I F+ VL+AC
Sbjct: 334 DAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTAC 393

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GLV EG + F  + + Y +   SEHY C+ DLL R GLL EA + +  MP++P    
Sbjct: 394 SHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI 453

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
            G+ +GAC+V+ ++ L + AA  LLELEP+    Y L+SN+YA  + W +V ++R++M +
Sbjct: 454 WGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNE 513

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
               K PGCS + I    H+F++ D SHP+   +  ML  V
Sbjct: 514 KGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQV 554



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 192/374 (51%), Gaps = 27/374 (7%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           GK LH  ++K  L + L ++  +L++Y  C        LF+ M  RN V W ++ISG + 
Sbjct: 98  GKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMK 157

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            +C       +++M  D    D +T  +L+ AC +  D+ VG +LHS I ++   +   +
Sbjct: 158 NHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVL 217

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEG 258
            SALV++Y KCG ++ AR+VFD++  +D+  W+ ++  Y  N     A+ +F  +     
Sbjct: 218 GSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSN 277

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           M+ +  T  +++++C  LG  + GR +H  + +      V +  SL+DM++K G+ID A 
Sbjct: 278 MRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAK 337

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           R+FD M+ K+++SWN+MV G   +G GREA+     M      PDE+T   +L++C    
Sbjct: 338 RIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACS--- 394

Query: 379 ISCETRQVHAYAIKNGVQAFLSIE------------NALINAYSKCGSIAGALQCFGSVK 426
                   HA  ++ G + F  IE              +++   + G +A A +    + 
Sbjct: 395 --------HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446

Query: 427 -EPDLVTWTSIIGA 439
            +PD   W S++GA
Sbjct: 447 LQPDGAIWGSMLGA 460



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF-CPDEVTLASILSSCG 375
           A  VF      +V++WN+M+  F  +   R A++   +ML+ S   PD  T  S+L  C 
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L      + +H   +K  + + L IE  L+N Y+ CG +  A   F  +   + V WTS
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +I  Y  +    E++ +++KM      PD +    ++SAC+
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G L+ G+ +H +I +    + +SL N ++ ++ KC   D  +++FD M  +++++WN
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWN 352

Query: 134 TLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++++G+     G      F  M   +++ D ITF  +L AC  A  ++ G++L   I  +
Sbjct: 353 SMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEAL 412

Query: 192 -GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLGDGAI 248
            G  L       +VDL  + G + +AR     + L  D  +W  M+ +C   N L  G  
Sbjct: 413 YGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEE 472

Query: 249 AVFNLMRLEGMK-GDYFTFSSL 269
           A   L+ LE    G Y   S++
Sbjct: 473 AARCLLELEPTNDGVYILLSNI 494


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 317/564 (56%), Gaps = 3/564 (0%)

Query: 79  LQQGKQLHSHIMKLGL-CN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           +++G+Q+    +K+GL C   + L N ++++Y +C +  D  K+FDEM   ++V+W   I
Sbjct: 233 VREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERI 292

Query: 137 SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               +        FR +L  N+ ++     ++L A  +   ++ GR++     K G+ L 
Sbjct: 293 GAAYD-AIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLV 351

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V++AL+ +YGKCG +  AR +FDE+LC D V WN +++ YA N L   A+ VF+ MR 
Sbjct: 352 ASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRD 411

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             ++ + +T +S++         +   QIH  ++K  F +D  + + L+  Y K   I +
Sbjct: 412 YLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICE 471

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           + RV+  ++  NV+  N M       G   +A+KL +   +     D +TL+ +L +CG+
Sbjct: 472 SKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGA 531

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+     R +H+ A+K+G+     +E+A+I+ Y KCG++  A + F +V + +LV W ++
Sbjct: 532 LTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAM 591

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           +  YA HG   E  E+F KML   ++PD I +L VL++C H GLV+E   Y + M+  + 
Sbjct: 592 VMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHG 651

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           ++P  EHY C+ DL GRVGLL +A   +  MPI P +      +  C +HG++ L + AA
Sbjct: 652 VVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAA 711

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +KL+EL+P     Y L+SN+YAS   W  V +LR++M+     K PG SWI++ G +H F
Sbjct: 712 KKLIELQPENDSAYVLLSNLYASAGRWNAVGKLRRVMKKKIICKEPGSSWIQVRGSVHYF 771

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLM 640
            +SD SHP++  +Y  L  ++  M
Sbjct: 772 FASDTSHPESKEIYMKLQRLYEEM 795



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 214/460 (46%), Gaps = 13/460 (2%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            Y QAL+ SA         Q ++  +K G      L + +++ +     F    +   + 
Sbjct: 22  LYPQALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDT 81

Query: 125 RVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
              + V+WN+LISG       G V   F  +    +  D  + +SL++ C   +  EV  
Sbjct: 82  PYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQNEVA- 140

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
             H   LK+G  LN FV S L+D Y K G V+ A + F E    D V+W  MV  +  N 
Sbjct: 141 --HGVCLKMGL-LNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNG 197

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF--DLDVLV 300
             +    VF  MR  G+  +   F SL +  G L   + G Q+ GL +K        + +
Sbjct: 198 EFEKGREVFVEMRGLGLGLELNEF-SLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHL 256

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L++MY++ G+  DA ++FD MT  +VVSW   +   G   D  EA +L R +L G+ 
Sbjct: 257 NNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERI---GAAYDAIEAFELFRLVLSGNM 313

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             +E  L ++LS+     +    RQ+     K G     S+ NALI  Y KCG +  A  
Sbjct: 314 EVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARH 373

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D V+W S+I  YA +GL K++++VF +M  + ++P+      +L   ++   
Sbjct: 374 IFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNF 433

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
             + ++  + ++    I+ DS   +CL    G+  ++ E+
Sbjct: 434 PEQAMQIHSYIVKLGFIVDDS-MLSCLITAYGKCNMICES 472



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 165/332 (49%), Gaps = 24/332 (7%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+V+A   F +Q  Q+HS+I+KLG     S+ + ++  Y KC    + ++++ ++   N+
Sbjct: 425 LEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINV 484

Query: 130 VTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           +  N + + +++  C  +    F+     +  +D IT + +L+AC    D+E GR +HS 
Sbjct: 485 LHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSM 544

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            LK G   + FV SA++D+Y KCG V++A + F  V   +LV WN MV  YA +      
Sbjct: 545 ALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEV 604

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLG---------SSKLGRQIHGLVIKQSFDLDV 298
             +FN M   G++ D  T+  ++NSC   G         SS L  ++HG+V         
Sbjct: 605 FELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSML--ELHGVVPCLEH---- 658

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMVVGFGQNGD---GREAVKLLRD 354
                ++D++ + G ++DA R  D M    +   W  ++ G   +G+   G  A K L +
Sbjct: 659 --YACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIE 716

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            LQ       V L+++ +S G  +   + R+V
Sbjct: 717 -LQPENDSAYVLLSNLYASAGRWNAVGKLRRV 747



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  LK       L+ G+ +HS  +K G+     +++ V+ VY KC   D+  K F  +  
Sbjct: 523 SIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSK 582

Query: 127 RNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N+V WN ++ G     C   V   F +ML   ++ D IT+  +L +C  A  +      
Sbjct: 583 NNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTY 642

Query: 185 HSFILKVGFGLNCFVSSA-LVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALN 241
            S +L++   + C    A ++DL+G+ G +EDA+R  D++ +  D  +W +++S C    
Sbjct: 643 LSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHG 702

Query: 242 CLGDGAIAVFNLMRLEGMKGD-YFTFSSLVNSCGTLGS-SKLGRQIHGLVI 290
            +  G +A   L+ L+      Y   S+L  S G   +  KL R +   +I
Sbjct: 703 NVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNAVGKLRRVMKKKII 753



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 11/280 (3%)

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           +   + +  +L    L  Q + L +K  F LD  +++ +V+ +A +G+   A R      
Sbjct: 23  YPQALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTP 82

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
             + VSWN+++ G+ +         L   + +    PDE +L+S++  CG L    +   
Sbjct: 83  YPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLE---QNEV 139

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
            H   +K G+     + + L++ Y+K G +  A +CF      D V WT+++  + ++G 
Sbjct: 140 AHGVCLKMGLLNGFVV-SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGE 198

Query: 446 SKESIEVFEKM--LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503
            ++  EVF +M  L   +  +  +   VL A S    V EG + F L +    +   S H
Sbjct: 199 FEKGREVFVEMRGLGLGLELNEFSLTSVLGALSD---VREGEQVFGLSVKMGLLCGCSIH 255

Query: 504 Y-TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
               L ++  R G   +A  +   M  EP   +    IGA
Sbjct: 256 LNNALMNMYSRCGSKSDAIKMFDEM-TEPDVVSWTERIGA 294


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/574 (31%), Positives = 311/574 (54%), Gaps = 35/574 (6%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADD 177
           +F+ ++  N++ WNT+  G       V+     + + ++ L  +  TF  LL++C +   
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLY------------------------------ 207
            + G ++H  +LK+G+ L+ +V ++L+ +Y                              
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 208 -GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
               G++E AR +FDE+  +D+V WN M+S Y        A+ +F  M    ++ D  T 
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
            +++++    GS +LGRQ+H  +    F  ++ +  +L+D Y+K G ++ AC +F G++ 
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSY 258

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           K+V+SWN ++ G+      +EA+ L ++ML+    P++VT+ SIL +C  L      R +
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318

Query: 387 HAYAIK--NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           H Y  K   GV    S+  +LI+ YSKCG I  A Q F S+    L  W ++I  +A HG
Sbjct: 319 HVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHG 378

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            +  + ++F +M  + ++PD I F+ +LSACSH G++  G   F  M  +Y I P  EHY
Sbjct: 379 RANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY 438

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+ DLLG  GL  EA +++++M +EP      + + ACK+HG++ L +  A+ L ++EP
Sbjct: 439 GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEP 498

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           + P +Y L+SN+YA+   W +VAR+R ++ D    KVPGCS IEI   +H F+  D+ HP
Sbjct: 499 NNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 558

Query: 625 QAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           +   +Y ML  +  L++E       + + +EM+E
Sbjct: 559 RNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEE 592



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 210/427 (49%), Gaps = 49/427 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---------- 119
           LK  AK    ++G Q+H H++KLG    L +   ++ +YV+ +  +D  K          
Sbjct: 70  LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129

Query: 120 ---------------------LFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                                +FDE+ V+++V+WN +ISG +  G        F+ M+  
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NVR D  T  +++ A  ++  IE+GR++HS+I   GFG N  + +AL+D Y KCG +E A
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F  +  +D++ WN+++  Y    L   A+ +F  M   G   +  T  S++++C  L
Sbjct: 250 CGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHL 309

Query: 277 GSSKLGRQIHGLVIKQSFDLDVL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+   +     + TSL+DMY+K G+I+ A +VF+ M  K++ +WN 
Sbjct: 310 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNA 369

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV-----HAY 389
           M+ GF  +G    A  +   M +    PD++T   +LS+C    +    R +     H Y
Sbjct: 370 MIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNY 429

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKE 448
            I   ++ +      +I+     G    A +   ++  EPD V W S++ A   HG    
Sbjct: 430 KITPKLEHY----GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHG---- 481

Query: 449 SIEVFEK 455
           ++E+ EK
Sbjct: 482 NVELGEK 488



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 32/235 (13%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF+ +   N++ WNTM  G   + D   A+KL   M+     P+  T   +L SC  
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIE-------------------------------NAL 405
           L  S E  Q+H + +K G +  L +                                 AL
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +  Y+  G I  A   F  +   D+V+W ++I  Y   G  KE++E+F++M+   VRPD 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
              + V+SA +  G +  G R  +  I+D+    + +    L D   + G +  A
Sbjct: 196 STMVTVISASARSGSIELG-RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249


>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana]
 gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 564

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/551 (33%), Positives = 315/551 (57%), Gaps = 7/551 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y +ALK+ +     +Q   +H + +  G C+ L L++ ++ +Y+K        KLFD 
Sbjct: 13  SLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDR 72

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +  R++V+W  +IS    CG   +    F+ M  ++V+ +  T+ S+L++C     ++ G
Sbjct: 73  ISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEG 132

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++H  + K     N  V SAL+ LY +CG +E+AR  FD +  RDLV WN M+  Y  N
Sbjct: 133 MQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTAN 192

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              D + ++F LM  EG K D FTF SL+ +   +   ++  ++HGL IK  F     + 
Sbjct: 193 ACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALI 252

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG-QNGDGREAVKLLRDMLQGSF 360
            SLV+ Y K G++ +A ++ +G   ++++S   ++ GF  QN    +A  + +DM++   
Sbjct: 253 RSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKT 312

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF-LSIENALINAYSKCGSIAGAL 419
             DEV ++S+L  C +++     RQ+H +A+K+    F +++ N+LI+ Y+K G I  A+
Sbjct: 313 KMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAV 372

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +KE D+ +WTS+I  Y  HG  +++I+++ +M    ++P+ + FL +LSACSH G
Sbjct: 373 LAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTG 432

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP--IEPRSDTLG 537
               G + ++ MI+ + I    EH +C+ D+L R G L EAY L+ S    +   S T G
Sbjct: 433 QTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWG 492

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
           AF+ AC+ HG++ L+K AA +LL +EP KPVNY  +++VYA+   W +    RK+M+++ 
Sbjct: 493 AFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLMKESG 552

Query: 598 D-HKVPGCSWI 607
             +K PG S +
Sbjct: 553 SCNKAPGYSLV 563


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 302/563 (53%), Gaps = 17/563 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +K  +    L  G  +H   +  G  + + +QN +L +Y+ C       ++F+ M 
Sbjct: 187 FPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVML 246

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNT+ISG    G        F  M+   V  D  T  S L +C    ++E+G +
Sbjct: 247 KRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIK 306

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  + K        V +ALVD+Y +CG +++A  VF E   +D++ W  M++ Y +N  
Sbjct: 307 VHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGN 366

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+A+   M+L+G+  +  T +SL+++C +L   K G+ +H  V+++  D DVLV T+
Sbjct: 367 AKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTA 426

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMYAK   +  + +VF   + K  V WN ++ G   N   REAV L + ML      +
Sbjct: 427 LIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEAN 486

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  S++ +   L+   +   +H+Y +++G  + +++   LI+ YSKCGS+  A + F 
Sbjct: 487 HATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFD 546

Query: 424 SV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
            +  KE D++ W+ +I  Y  HG  + ++ +F +M+   ++P+ I F  VL ACSH GLV
Sbjct: 547 EIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLV 606

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            +GL  F  MI +Y   P   HYTC+ DLLGR G L EAYDL+ SMP +      GA +G
Sbjct: 607 DDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLG 666

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC +H ++ L + AAE+L ELEP    NY L++N+YA+   W          +D  +HK+
Sbjct: 667 ACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRW----------KDAENHKL 716

Query: 602 PGCSWIEIAGEIHTFVSSDRSHP 624
                     EI+TFV+    HP
Sbjct: 717 ---QLSPPPKEINTFVTDLNMHP 736



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 207/402 (51%), Gaps = 6/402 (1%)

Query: 79  LQQGKQLHSHIMKLGLC---NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           L + K LH H +  GL    N + L + +   Y  C       KLFD++   ++  WN +
Sbjct: 95  LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAI 154

Query: 136 ISGIINCGGNVTPY--FRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           I   ++ G +      F  M+       D  TF  +++AC     + VG  +H   L  G
Sbjct: 155 IKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSG 214

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  N FV ++L+ +Y  CG V  AR+VF+ +L R +V WN M+S +  N   + A+AVFN
Sbjct: 215 FSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFN 274

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M    ++ D  T  S + SCG L   +LG ++H LV K      + V  +LVDMY++ G
Sbjct: 275 SMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCG 334

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            +D+A  VF     K+V++W +M+ G+  NG+ + A+ L   M      P+ VTLAS+LS
Sbjct: 335 GMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLS 394

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C SL    + + +HA+ ++  + + + +  ALI+ Y+KC +++ + Q F        V 
Sbjct: 395 ACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVP 454

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           W +++     + L++E++ +F+ ML   V  +   F  V+ A
Sbjct: 455 WNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPA 496



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 113/232 (48%), Gaps = 20/232 (8%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E   + H+ ++  +   A    L+Q   LHS++++ G  +K+++   ++ +Y KC + D 
Sbjct: 481 EEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDY 540

Query: 117 MEKLFDEM--RVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
             K+FDE+  + ++I+ W+ LI+  G+   G      F +M+   ++ + ITF S+L AC
Sbjct: 541 AHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHAC 600

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSAL-------VDLYGKCGFVEDARRVFDEV-L 224
                ++ G  L  ++++       + SS L       VDL G+ G +++A  +   +  
Sbjct: 601 SHRGLVDDGLTLFKYMIE------NYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPF 654

Query: 225 CRDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
            ++  +W  ++ +C     +  G +A   L  LE    G+Y   +++  + G
Sbjct: 655 QQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVG 706


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 309/579 (53%), Gaps = 3/579 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +K     G    G+ +H+ ++K G    + + + ++ +Y K   F++  ++FDEM 
Sbjct: 110 FPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMP 169

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++ +WNT+IS     G        F RM       + ++    + AC +   +E G+ 
Sbjct: 170 ERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKE 229

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K GF L+ +V+SALVD+YGKC  +E AR VF ++  + LV WN M+  Y     
Sbjct: 230 IHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGD 289

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               + + N M +EG +    T +S++ +C    +   G+ IHG VI+   + D+ V  S
Sbjct: 290 SKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCS 349

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+D+Y K G  + A  VF         SWN M+  +   G+  +AV++   M+     PD
Sbjct: 350 LIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPD 409

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VT  S+L +C  L+   + +Q+H    ++ ++    + +AL++ YSKCG+   A + F 
Sbjct: 410 VVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFN 469

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S+ + D+V+WT +I AY  HG  +E++  F++M    ++PD +  L VLSAC H GL+ E
Sbjct: 470 SIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDE 529

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-IEPRSDTLGAFIGA 542
           GL++F+ M S Y I P  EHY+C+ D+LGR G L+EAY+++   P     ++ L     A
Sbjct: 530 GLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSA 589

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C +H    L    A  L+E  P     Y ++ N+YAS   W    R+R  M++    K P
Sbjct: 590 CCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKP 649

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           GCSWIE++ ++  F + DRSH +A ++Y  L  + G ME
Sbjct: 650 GCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLSGHME 688



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 242/454 (53%), Gaps = 5/454 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-NIVTWNTLIS 137
           L++ K +H  I+ LGL   + L   +++VY  CK       +F+   +R ++  WN+L+S
Sbjct: 20  LRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMS 79

Query: 138 GIINCG--GNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G        +    F+R+L  ++ + D  TF ++++A        +GR +H+ ++K G+ 
Sbjct: 80  GYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYV 139

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            +  V+S+LV +Y K    E++ +VFDE+  RD+  WN ++SC+  +   + A+ +F  M
Sbjct: 140 CDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRM 199

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G + +  + +  +++C  L   + G++IH   +K+ F+LD  V ++LVDMY K   +
Sbjct: 200 ESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCL 259

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           + A  VF  M  K++V+WN+M+ G+   GD +  V++L  M+     P + TL SIL +C
Sbjct: 260 EVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMAC 319

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
                    + +H Y I++ V A + +  +LI+ Y KCG    A   F   ++    +W 
Sbjct: 320 SRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWN 379

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            +I +Y   G   +++EV+++M+S  V+PD + F  VL ACS    + +G +  +L IS+
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKG-KQIHLSISE 438

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             +  D    + L D+  + G   EA+ +  S+P
Sbjct: 439 SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP 472



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 164/314 (52%), Gaps = 3/314 (0%)

Query: 167 SLLRACVQA-DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           SLLR C  +   +   + +H  IL +G   +  +  +L+++Y  C     AR VF+    
Sbjct: 8   SLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDI 67

Query: 226 R-DLVLWNVMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
           R D+ +WN ++S Y+ N +    + VF  L+       D FTF +++ + G LG   LGR
Sbjct: 68  RSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGR 127

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            IH LV+K  +  DV+VA+SLV MYAK    +++ +VFD M  ++V SWNT++  F Q+G
Sbjct: 128 MIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSG 187

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           +  +A++L   M    F P+ V+L   +S+C  L      +++H   +K G +    + +
Sbjct: 188 EAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNS 247

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           AL++ Y KC  +  A + F  +    LV W S+I  Y   G SK  +E+  +M+    RP
Sbjct: 248 ALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRP 307

Query: 464 DSIAFLEVLSACSH 477
                  +L ACS 
Sbjct: 308 SQTTLTSILMACSR 321



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E T  + +  +  L   ++   L  GK +H ++++  +   + +   ++ +Y KC   
Sbjct: 301 IIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEA 360

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +  E +F + +     +WN +IS  I+ G        + +M+   V+ D +TF S+L AC
Sbjct: 361 NLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPAC 420

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            Q   +E G+++H  I +     +  + SAL+D+Y KCG  ++A R+F+ +  +D+V W 
Sbjct: 421 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWT 480

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           VM+S Y  +     A+  F+ M+  G+K D  T  +++++CG  G
Sbjct: 481 VMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAG 525


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 305/542 (56%), Gaps = 5/542 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S ALK   +      G+ LH   +K+G  +   + N ++ +Y K +  +   K+F+ +  
Sbjct: 170 SLALKACIRSAEYSYGRSLHCDAIKVGGADGF-VMNSLVDMYAKAEDLECARKVFERIPD 228

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W ++ISG +  G   +    F +M  DNV     T  +++ AC     +  GR +
Sbjct: 229 RNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWM 288

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++K G   N F+S+AL+D+Y KCG ++ AR VFDE+   DLVLW  M+  Y  N   
Sbjct: 289 HGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNP 348

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F   R   +  +  T ++++++   L    LG+ IHGL +K       +V  +L
Sbjct: 349 LDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNAL 408

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPD 363
           VDMYAK   + +A R+F  ++ K+VV+WN+M+ G+ +N  G +A+ L + M LQGS  PD
Sbjct: 409 VDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGS-SPD 467

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            +++ + LS+   L      + +H YA+K+   + + ++ AL+N Y+KCG +  A + F 
Sbjct: 468 AISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFD 527

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + + + VTW ++IG Y   G S  SI +F +ML   V P+ IAF  +LS CSH G+V+ 
Sbjct: 528 EMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTA 587

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G RYF+ M   ++I P  +HY C+ D+L R G L +A + + +MP++  +   GAF+  C
Sbjct: 588 GKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGC 647

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++H  +  A+ A ++++ L P +P  Y L+SN+Y S   W     +R+ M++    K+PG
Sbjct: 648 ELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPG 707

Query: 604 CS 605
           CS
Sbjct: 708 CS 709



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 180/314 (57%), Gaps = 1/314 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D    +  L+AC+++ +   GR LH   +KVG G + FV ++LVD+Y K   +E AR+VF
Sbjct: 165 DDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVF 223

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  R++V W  M+S    N      + +FN MR + +    +T ++++ +C  L    
Sbjct: 224 ERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLH 283

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR +HG VIKQ    +  ++ +L+DMY K G +D A  VFD ++  ++V W TM+VG+ 
Sbjct: 284 QGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYT 343

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QNG+  +A++L  D    +  P+ VT A++LS+   L      + +H  A+K G+  +  
Sbjct: 344 QNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNV 403

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NAL++ Y+KC +++ A + FG +   D+V W S+I  YA + +  +++ +F++M    
Sbjct: 404 VGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQG 463

Query: 461 VRPDSIAFLEVLSA 474
             PD+I+ +  LSA
Sbjct: 464 SSPDAISVVNALSA 477



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 152/327 (46%), Gaps = 18/327 (5%)

Query: 182 RRLHSFILKVGFGL---NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
           R LH+ +L    GL   +    + L+  Y   G +  AR VFD     D   +  M+ C 
Sbjct: 79  RVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCL 138

Query: 239 ALNCLGDGAIAVFNLMRLE---GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
                   A+A+ + MR         D F  S  + +C        GR +H   IK    
Sbjct: 139 VQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-G 197

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  V  SLVDMYAK  +++ A +VF+ +  +NVVSW +M+ G  QNG   + + L   M
Sbjct: 198 ADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKM 257

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            Q +  P E T+A+++++C +L    + R +H   IK G+ +   I  AL++ Y KCG +
Sbjct: 258 RQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGEL 317

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F  +   DLV WT++I  Y  +G   +++ +F       + P+S+    VLSA 
Sbjct: 318 DHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSAS 377

Query: 476 S-----------HGGLVSEGLRYFNLM 491
           +           HG  V  GL  +N++
Sbjct: 378 AQLRDLSLGKSIHGLAVKLGLVEYNVV 404



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 27/272 (9%)

Query: 269 LVNSCGTLGSSKLGRQIHG--LVIKQSFDLDVLVA-TSLVDMYAKNGNIDDACRVFDGMT 325
           L+ SCGTL S    R +H   L   Q   L  L A T L+  YA  G++  A  VFDG  
Sbjct: 68  LLPSCGTLLSL---RVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 124

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP---DEVTLASILSSCGSLSISCE 382
             +  S+  M+    Q     +AV L  DM +   CP   D+  L+  L +C   +    
Sbjct: 125 RPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSY 184

Query: 383 TRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
            R +H  AIK  G   F  + N+L++ Y+K   +  A + F  + + ++V+WTS+I    
Sbjct: 185 GRSLHCDAIKVGGADGF--VMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCV 242

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGL---RY 487
            +G + + + +F KM    V P       V++ACS           HG ++ +GL    +
Sbjct: 243 QNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSF 302

Query: 488 FNLMISDYHI-LPDSEHYTCLTDLLGRVGLLV 518
            +  + D ++   + +H  C+ D L  + L++
Sbjct: 303 ISAALLDMYVKCGELDHARCVFDELSYIDLVL 334


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/501 (33%), Positives = 286/501 (57%), Gaps = 6/501 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF  L+ +C Q + +  G  +H  ++  GF  + F+++ L+++Y + G ++ AR+VFDE 
Sbjct: 80  TFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDET 139

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC--GTLGSSKL 281
             R + +WN +    A+   G   + ++  M   G+  D FT++ ++ +C    L  S L
Sbjct: 140 RERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPL 199

Query: 282 --GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G++IH  +++  ++ ++ V T+L+D+YAK G++  A  VF  M  KN VSW+ M+  F
Sbjct: 200 QKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACF 259

Query: 340 GQNGDGREAVKLLRDMLQGSF--CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            +N    +A++L + M+  +    P+ VT+ ++L +C  L+   + + +H Y ++ G+ +
Sbjct: 260 AKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDS 319

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            L + NALI  Y +CG I    + F ++K  D+V+W S+I  Y  HG  K++I++FE M+
Sbjct: 320 ILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMI 379

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
                P  I+F+ VL ACSH GLV EG   F  M+S Y I P  EHY C+ DLLGR   L
Sbjct: 380 HQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRL 439

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA  L+  M  EP     G+ +G+C++H ++ LA+ A+  L ELEP    NY L++++Y
Sbjct: 440 DEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIY 499

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A  + W +   + K++      K+PGCSWIE+  ++++FVS D  +PQ   ++A+L  + 
Sbjct: 500 AEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLS 559

Query: 638 GLMEENNVSGHCNVLDKEMDE 658
             M+        NV+  ++DE
Sbjct: 560 NEMKAQGYVPQTNVVLYDLDE 580



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 215/447 (48%), Gaps = 29/447 (6%)

Query: 18  PLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTH-------SAHSFYSQAL 70
           P+S+++     N +  + N  K + + L   L   G + ++ H            +   +
Sbjct: 30  PVSFVS----LNPSANLMNDIKGNNNQLIQSLCKGGNLKQAIHLLCCEPNPTQRTFEHLI 85

Query: 71  KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
              A+   L  G  +H  ++  G      L  +++++Y +  + D   K+FDE R R I 
Sbjct: 86  CSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIY 145

Query: 131 TWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD----DIEVGRRL 184
            WN L   +  + CG  +   + +M    +  D  T+  +L+ACV ++     ++ G+ +
Sbjct: 146 VWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEI 205

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ IL+ G+  N  V + L+D+Y K G V  A  VF  +  ++ V W+ M++C+A N + 
Sbjct: 206 HAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMP 265

Query: 245 DGAIAVFNLMRLEGMKG--DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             A+ +F LM LE      +  T  +++ +C  L + + G+ IHG ++++  D  + V  
Sbjct: 266 MKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLN 325

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+ MY + G I    RVFD M  ++VVSWN+++  +G +G G++A+++  +M+     P
Sbjct: 326 ALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSP 385

Query: 363 DEVTLASILSSCGSLSISCETR-----QVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
             ++  ++L +C    +  E +      +  Y I  G++ +      +++   +   +  
Sbjct: 386 SYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYA----CMVDLLGRANRLDE 441

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           A++    +  EP    W S++G+   H
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIH 468



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFC----PDEVTLASILSSCGSLSISCETRQVHA 388
           N ++    + G+ ++A+ LL        C    P + T   ++ SC   +   +   VH 
Sbjct: 51  NQLIQSLCKGGNLKQAIHLL--------CCEPNPTQRTFEHLICSCAQQNSLSDGLDVHR 102

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
             + +G      +   LIN Y + GSI  A + F   +E  +  W ++  A A  G  KE
Sbjct: 103 RLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKE 162

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            ++++ +M    +  D   +  VL AC
Sbjct: 163 LLDLYVQMNWIGIPSDRFTYTFVLKAC 189


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 201/663 (30%), Positives = 336/663 (50%), Gaps = 70/663 (10%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +   T   H      LK   +    + G   H  I   G  + + + N ++ +Y +C + 
Sbjct: 147 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 206

Query: 115 DDMEKLFDEMRVR---NIVTWNTLISGIINCGGNVTPY--FRRMLL------DNVRLDHI 163
           ++   +FDE+  R   ++++WN+++S  +      T    F +M L       N R D I
Sbjct: 207 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 266

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           +  ++L AC     +   + +H   ++ G   + FV +AL+D Y KCG +E+A +VF+ +
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS---------------- 267
             +D+V WN MV+ Y+ +   + A  +F  MR E +  D  T++                
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386

Query: 268 -------------------SLVNSCGTLGSSKLGRQIHGLVIKQSF----------DLDV 298
                              S++++C +LG+   G +IH   +K             D D+
Sbjct: 387 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 446

Query: 299 LVATSLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +V  +L+DMY+K  +   A  +FD   +  +NVV+W  M+ G  Q GD  +A+KL  +M+
Sbjct: 447 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 506

Query: 357 QGSF--CPDEVTLASILSSCGSLSISCETRQVHAYAIKN---GVQAFLSIENALINAYSK 411
              +   P+  T++ IL +C  L+     +Q+HAY +++      A+  + N LI+ YSK
Sbjct: 507 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYF-VANCLIDMYSK 565

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CG +  A   F S+ +   ++WTS++  Y  HG   E++++F+KM      PD I FL V
Sbjct: 566 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 625

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           L ACSH G+V +GL YF+ M +DY + P +EHY C  DLL R G L +A+  +  MP+EP
Sbjct: 626 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEP 685

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
            +    A + AC+VH ++ LA+ A  KL+E+      +Y L+SN+YA+   W DVAR+R 
Sbjct: 686 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 745

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV------FGLMEENNV 645
           +M+ +   K PGCSW++      +F   DRSHP +  +YA+L ++       G + E N 
Sbjct: 746 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 805

Query: 646 SGH 648
           + H
Sbjct: 806 ALH 808



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 238/494 (48%), Gaps = 69/494 (13%)

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-----SGIINCGGNVTPYFRRM 153
           SL   V+  Y+ C A D    + + +     V WN LI      G ++   NV+    RM
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC---RM 146

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           L    R DH T   +L+AC +      G   H  I   GF  N F+ +ALV +Y +CG +
Sbjct: 147 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 206

Query: 214 EDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRL------EGMKGDYF 264
           E+A  +FDE+  R   D++ WN +VS +  +     A+ +F+ M L         + D  
Sbjct: 207 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 266

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           +  +++ +CG+L +    +++HG  I+     DV V  +L+D YAK G +++A +VF+ M
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 325 TAKNVVSWNTMVVGFGQNGD-----------------------------------GREAV 349
             K+VVSWN MV G+ Q+G+                                     EA+
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN----------GVQAFL 399
            L R M+     P+ VT+ S+LS+C SL    +  ++HAY++KN          G    L
Sbjct: 387 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 446

Query: 400 SIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + NALI+ YSKC S   A   F  +  +E ++VTWT +IG +A +G S +++++F +M+
Sbjct: 447 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 506

Query: 458 S--HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGR 513
           S  + V P++     +L AC+H   +  G +  +  +  +H    S ++   CL D+  +
Sbjct: 507 SEPYGVAPNAYTISCILMACAHLAAIRIG-KQIHAYVLRHHRYESSAYFVANCLIDMYSK 565

Query: 514 VGLLVEAYDLLASM 527
            G +  A  +  SM
Sbjct: 566 CGDVDTARHVFDSM 579


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/602 (30%), Positives = 316/602 (52%), Gaps = 38/602 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L +G+QLH HI+ LG      L  +++  Y       D   + +   + +   WN LIS 
Sbjct: 116 LAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISS 175

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G        +++M+   +R D+ T+ S+L+AC +  D+  G+ +H  I       +
Sbjct: 176 YVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWS 235

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +AL+ +YGKCG V  AR +FD++  RD V WN M+S YA   + + A  +F  M  
Sbjct: 236 LIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWA 295

Query: 257 EGMKGDYFTFSSL-----------------------------------VNSCGTLGSSKL 281
           E ++ +   ++++                                   + +C  +G +KL
Sbjct: 296 EDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKL 355

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G++IH   I+  F     V  +L+ MY++  ++  A  +F  M AK++++WN+++ G   
Sbjct: 356 GKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCH 415

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLS 400
                EA  LLR+ML     P+ VT+AS+L  C  ++     ++ H Y  +    +  L 
Sbjct: 416 MDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLL 475

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NAL++ Y++ G +  A + F  + E D +T+TS+I  Y   G  + ++++FE+M +  
Sbjct: 476 LWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQ 535

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD I  + VLSACSH GLV++G   F  M S Y + P  EH+ C+TDL GR GLL +A
Sbjct: 536 IKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKA 595

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++ +MP +P        IGAC++H +  + +WAAEKLLE++P  P  Y L++N+YA+ 
Sbjct: 596 KEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAA 655

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
            CW  +A++R  MRD    K PGC+W+++      F+  D S+  A  +Y +L  +  +M
Sbjct: 656 GCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVM 715

Query: 641 EE 642
           +E
Sbjct: 716 KE 717



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 210/444 (47%), Gaps = 44/444 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK   +   L  GK++H  I    +   L + N ++ +Y KC        LFD++ 
Sbjct: 204 YPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIP 263

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSL--------------- 168
            R+ V+WN++IS   + G        F  M  +++ L+ I +N++               
Sbjct: 264 ERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALE 323

Query: 169 --------------------LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
                               L AC    D ++G+ +HSF ++  FG    V +AL+ +Y 
Sbjct: 324 LLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYS 383

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           +C  ++ A  +F  +  + L+ WN ++S        + A  +   M L G++ +Y T +S
Sbjct: 384 RCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIAS 443

Query: 269 LVNSCGTLGSSKLGRQIH-GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           ++  C  + + + G++ H  +  ++ F   +L+  +LVDMYA++G + +A RVFD +  +
Sbjct: 444 VLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGER 503

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387
           + +++ +M+ G+G  G+G+ A+KL  +M      PD +T+ ++LS+C    +  +  Q+ 
Sbjct: 504 DKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG-QLL 562

Query: 388 AYAIKN--GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
              +++  G+   L     + + + + G +  A +   ++  +P    W ++IGA   H 
Sbjct: 563 FEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHR 622

Query: 445 LSKESIEVFEKMLSHAVRPDSIAF 468
            ++      EK+L   ++P++  +
Sbjct: 623 NTEIGEWAAEKLLE--MKPENPGY 644



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 200/470 (42%), Gaps = 50/470 (10%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI--INCGGNVTPYFR-----RMLL 155
           Q +H    C A +  ++ F  +    I   ++L++ +      GN+   F+     R+  
Sbjct: 35  QHVHPSASCNALESAQETFTSVDASMI---DSLLTSLKEFTSRGNLLDAFKTVSLIRLHA 91

Query: 156 DNVRLDHIT--FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
            +   D I    +SLL +C     +  GR+LH  I+ +GF  +  +   LV  Y     +
Sbjct: 92  SSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLL 151

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
            DA  + +         WN+++S Y  N     A++ +  M  +G++ D FT+ S++ +C
Sbjct: 152 VDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 211

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
           G       G+++H  +        ++V  +L+ MY K G +  A  +FD +  ++ VSWN
Sbjct: 212 GEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWN 271

Query: 334 TMVV-----------------------------------GFGQNGDGREAVKLLRDMLQG 358
           +M+                                    G+ + G+ + A++LL  M + 
Sbjct: 272 SMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKC 331

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               D V L   L +C  +  +   +++H++AI++      +++NALI  YS+C  +  A
Sbjct: 332 GSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHA 391

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  ++   L+TW SII        S+E+  +  +ML   + P+ +    VL  C+  
Sbjct: 392 YLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARV 451

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA---YDLLA 525
             +  G  +   M            +  L D+  R G ++EA   +D+L 
Sbjct: 452 ANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLG 501


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/520 (31%), Positives = 289/520 (55%), Gaps = 32/520 (6%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +++L+++C+++  ++ G+++H  I   GF    F+ + L+++Y KC  + D++++FDE+ 
Sbjct: 73  YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMP 132

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLM------------------------------ 254
            RDL  WN+++S YA   L   A ++F+ M                              
Sbjct: 133 ERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRM 192

Query: 255 --RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
             R +  K + FT SS + +   +   ++G++IHG +++   D D +V ++L DMY K G
Sbjct: 193 MKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCG 252

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +I++A  +FD M  +++V+W  M+  + Q+G  +E   L  D+L+    P+E T + +L+
Sbjct: 253 SIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLN 312

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C + +     ++VH Y  + G   F    +AL++ YSKCG++  A + F    +PDL +
Sbjct: 313 ACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFS 372

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           WTS+I  YA +G   E+I  FE ++    +PD I F+ VLSAC+H GLV +GL YF+ + 
Sbjct: 373 WTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIK 432

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
             Y +   ++HY C+ DLL R G   EA ++++ M ++P      + +G C++HG++ LA
Sbjct: 433 EQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLA 492

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           + AAE L E+EP  P  Y  ++N+YA+   W +VA++RK M D    K PG SWI I  +
Sbjct: 493 QRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRD 552

Query: 613 IHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL 652
           +H F+  D SHP++  +   L  +   M+E       N +
Sbjct: 553 VHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFV 592



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 225/477 (47%), Gaps = 61/477 (12%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +H+    + S YS  ++   K   LQQGK++H HI   G    L + N++L +Y KC + 
Sbjct: 62  LHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSL 121

Query: 115 DDMEKLFDEMRVRNIVTWNTL-------------------------------ISGII--N 141
            D +KLFDEM  R++ +WN L                               ISG +  +
Sbjct: 122 MDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHD 181

Query: 142 CGGNVTPYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                   FR M   DN + +  T +S L A      + +G+ +H +I++ G   +  V 
Sbjct: 182 RPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVW 241

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           SAL D+YGKCG +E+AR +FD+++ RD+V W  M+  Y  +        +F  +   G++
Sbjct: 242 SALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIR 301

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + FTFS ++N+C    S +LG+++HG + +  FD     A++LV MY+K GN+  A RV
Sbjct: 302 PNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERV 361

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F      ++ SW +++ G+ QNG   EA++    +++    PD +T   +LS+C      
Sbjct: 362 FKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACA----- 416

Query: 381 CETRQVHAYAIKNGVQAFLSIENA------------LINAYSKCGSIAGALQCFGSVK-E 427
                 HA  +  G+  F SI+              +I+  ++ G    A      +  +
Sbjct: 417 ------HAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMK 470

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA-FLEVLSACSHGGLVSE 483
           PD   W S++G    HG  K +    E +    + P++ A ++ + +  +  G+ SE
Sbjct: 471 PDKFLWASLLGGCRIHGNLKLAQRAAEALFE--IEPENPATYVTLANIYATAGMWSE 525



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 179/366 (48%), Gaps = 14/366 (3%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T  I+   +HDR   + +L       +++ S     S AL  +A    L+ GK++H +IM
Sbjct: 171 TAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIM 230

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY- 149
           + GL +   + + +  +Y KC + ++   +FD+M  R+IVTW  +I      G     + 
Sbjct: 231 RTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFD 290

Query: 150 -FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            F  +L   +R +  TF+ +L AC      E+G+++H ++ +VGF    F +SALV +Y 
Sbjct: 291 LFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYS 350

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KCG +  A RVF E    DL  W  +++ YA N   D AI  F L+   G + D+ TF  
Sbjct: 351 KCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVG 410

Query: 269 LVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMT 325
           ++++C   G    G    H   IK+ + L         ++D+ A++G  D+A  +   M+
Sbjct: 411 VLSACAHAGLVDKGLDYFHS--IKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMS 468

Query: 326 AK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE----VTLASILSSCGSLSIS 380
            K +   W +++ G   +G+ + A +    + +    P+     VTLA+I ++ G  S  
Sbjct: 469 MKPDKFLWASLLGGCRIHGNLKLAQRAAEALFE--IEPENPATYVTLANIYATAGMWSEV 526

Query: 381 CETRQV 386
            + R+ 
Sbjct: 527 AKIRKT 532



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q    +EA+++L  + +    P     ++++ SC    +  + ++VH +   +G    L 
Sbjct: 51  QQNRLKEALQILHQIDK----PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLF 106

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I N L+  Y+KC S+  + + F  + E DL +W  +I  YA  GL +E+  +F+KM    
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER- 165

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
              D+ ++  ++S        +E L  F +M
Sbjct: 166 ---DNFSWTAMISGYVRHDRPNEALELFRMM 193


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/587 (29%), Positives = 326/587 (55%), Gaps = 10/587 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL   ++ G L+ G+ +H+  +  GL + + + N ++ +Y KC    +  ++FD   
Sbjct: 112 YAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAE 171

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--IEVG 181
            R+ V+WN+L+SG +  G    +   F  M    + L+     S+++ C    D  +++ 
Sbjct: 172 ERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIA 231

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS--CYA 239
             +H  ++K G   + F+ SA++D+Y K G + +A  +F  V   ++V++N M++  C  
Sbjct: 232 EAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRT 291

Query: 240 LNCLG----DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
              +G      A+ +++ ++  GM+   FTFSS++ +C   G  + G+QIHG VIK +F 
Sbjct: 292 ETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQ 351

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  + ++L+D+Y  +G ++D  R F      ++V+W  MV G  QN    +A+ L  + 
Sbjct: 352 EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHES 411

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L     PD  T++S++++C SL+++    Q+  +A K+G   F  + N+ ++ Y++ G +
Sbjct: 412 LGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDV 471

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + F  ++  D+V+W+++I  +A HG +++++  F++M+   V P+ I FL VL+AC
Sbjct: 472 DAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTAC 531

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SHGGLV EGLRY+  M  DY + P  +H TC+ DLLGR G L +A   +++         
Sbjct: 532 SHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVI 591

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             + + +C++H  +   +  A +++ELEP+   +Y ++ N+Y         ++ R +M+ 
Sbjct: 592 WRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQ 651

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
               K PG SWIE+   +H+FV+ D+SHP++  +Y  L  +   +E+
Sbjct: 652 RGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEK 698



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 194/399 (48%), Gaps = 14/399 (3%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY----FRRM 153
           L L+N +L  Y +        +L DEM  RN V++N LI      G  + P       R 
Sbjct: 43  LFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREG--LAPLSLETLARA 100

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
               V +D  ++ + L AC +A  +  GR +H+  +  G     FVS++LV +Y KCG +
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
            +ARRVFD    RD V WN +VS Y      +  + VF +MR  GM  + F   S++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 274 GTLGSSKL--GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
              G   +     +HG VIK   D DV + ++++DMYAK G + +A  +F  +   NVV 
Sbjct: 221 SGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVM 280

Query: 332 WNTMVVGFGQNGD------GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +NTM+ GF +           EA+ L  ++      P E T +S+L +C         +Q
Sbjct: 281 FNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQ 340

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           +H   IK   Q    I +ALI+ Y   G +    +CF S  + D+VTWT+++     + L
Sbjct: 341 IHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNEL 400

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            ++++ +F + L   ++PD      V++AC+   +   G
Sbjct: 401 HEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAG 439



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 15/342 (4%)

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F+ + L+  Y + G    ARR+ DE+  R+ V +N+++  Y+   L   ++      R  
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D F++++ + +C   G  + GR +H L I       V V+ SLV MY+K G + +A
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC--- 374
            RVFD    ++ VSWN++V G+ + G   E V++   M +G    +   L S++  C   
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 375 --GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
             G++ I+     VH   IK G+ + + + +A+I+ Y+K G++  A   F SV+EP++V 
Sbjct: 224 GDGTMDIA---EAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVM 280

Query: 433 WTSIIGAYAF------HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           + ++I  +          ++ E++ ++ ++ S  ++P    F  VL AC+  G +  G +
Sbjct: 281 FNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQ 340

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               +I  Y    D    + L DL    G + + +    S P
Sbjct: 341 IHGQVIK-YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP 381


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 312/578 (53%), Gaps = 11/578 (1%)

Query: 74  AKFGFLQQGKQLHSHIM---KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           A   +L  GK +H+  +   +    + +S  N ++H+YVKC        LFD M +RN+V
Sbjct: 23  ADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVV 82

Query: 131 TWNTLISGIINCGGN---VTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +WN L++G ++ GGN   V   F+ M+ L N   +   F + L AC     ++ G + H 
Sbjct: 83  SWNVLMAGYLH-GGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL---CRDLVLWNVMVSCYALNCL 243
            + K G   + +V SALV +Y +C  VE A +V D V      D+  +N +++    +  
Sbjct: 142 LLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGR 201

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G+ A+ V   M  E +  D+ T+  ++  C  +   +LG ++H  +++     D  V + 
Sbjct: 202 GEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSM 261

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY K G + +A  VFDG+  +NVV W  ++  + QNG   E++ L   M +    P+
Sbjct: 262 LIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPN 321

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           E T A +L++C  ++       +HA   K G +  + + NALIN YSK GSI  +   F 
Sbjct: 322 EYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFT 381

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D++TW ++I  Y+ HGL K++++VF+ M+S    P+ + F+ VLSA SH GLV E
Sbjct: 382 DMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKE 441

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G  Y N ++ ++ I P  EHYTC+  LL R GLL EA + + +  ++         + AC
Sbjct: 442 GFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNAC 501

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            VH +  L +  AE +L+++P     Y L+SN+YA  R W  V  +RK+MR+    K PG
Sbjct: 502 HVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPG 561

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
            SW++I  +IH F+S   +HP+++ +Y  +  +  L++
Sbjct: 562 ASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIK 599



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 213/385 (55%), Gaps = 7/385 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM- 124
           ++ AL   +  G +++G Q H  + K GL     +++ ++H+Y +C   +   ++ D + 
Sbjct: 120 FTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVP 179

Query: 125 --RVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
              V +I ++N++++ ++    G       RRM+ + V  DH+T+  ++  C Q  D+++
Sbjct: 180 GEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQL 239

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G R+H+ +L+ G   + FV S L+D+YGKCG V +AR VFD +  R++V+W  +++ Y  
Sbjct: 240 GLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQ 299

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N   + ++ +F  M  EG   + +TF+ L+N+C  + + + G  +H  V K  F   V+V
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIV 359

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L++MY+K+G+ID +  VF  M  +++++WN M+ G+  +G G++A+++ +DM+    
Sbjct: 360 RNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEE 419

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGAL 419
           CP+ VT   +LS+   L +  E      + ++N  ++  L     ++   S+ G +  A 
Sbjct: 420 CPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAE 479

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFH 443
               + + + D+V W +++ A   H
Sbjct: 480 NFMKTTQVKWDVVAWRTLLNACHVH 504



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  Y   + + A+   LQ G ++H+ +++ GL     + + ++ +Y KC    +   +FD
Sbjct: 221 HVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFD 280

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            ++ RN+V W  L++  +  G        F  M  +    +  TF  LL AC     +  
Sbjct: 281 GLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRH 340

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G  LH+ + K+GF  +  V +AL+++Y K G ++ +  VF +++ RD++ WN M+  Y+ 
Sbjct: 341 GDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSH 400

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVL 299
           + LG  A+ VF  M       +Y TF  ++++   LG  K G   ++ L+     +  + 
Sbjct: 401 HGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLE 460

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
             T +V + ++ G +D+A         K +VV+W T++
Sbjct: 461 HYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLL 498


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 201/659 (30%), Positives = 335/659 (50%), Gaps = 70/659 (10%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T   H      LK   +    + G   H  I   G  + + + N ++ +Y +C + ++  
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 119 KLFDEMRVR---NIVTWNTLISGIINCGGNVTPY--FRRMLL------DNVRLDHITFNS 167
            +FDE+  R   ++++WN+++S  +      T    F +M L       N R D I+  +
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           +L AC     +   + +H   ++ G   + FV +AL+D Y KCG +E+A +VF+ +  +D
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS-------------------- 267
           +V WN MV+ Y+ +   + A  +F  MR E +  D  T++                    
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397

Query: 268 ---------------SLVNSCGTLGSSKLGRQIHGLVIKQSF----------DLDVLVAT 302
                          S++++C +LG+   G +IH   +K             D D++V  
Sbjct: 398 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 457

Query: 303 SLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +L+DMY+K  +   A  +FD   +  +NVV+W  M+ G  Q GD  +A+KL  +M+   +
Sbjct: 458 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 517

Query: 361 --CPDEVTLASILSSCGSLSISCETRQVHAYAIKN---GVQAFLSIENALINAYSKCGSI 415
              P+  T++ IL +C  L+     +Q+HAY +++      A+  + N LI+ YSKCG +
Sbjct: 518 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYF-VANCLIDMYSKCGDV 576

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A   F S+ +   ++WTS++  Y  HG   E++++F+KM      PD I FL VL AC
Sbjct: 577 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 636

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH G+V +GL YF+ M +DY + P +EHY C  DLL R G L +A+  +  MP+EP +  
Sbjct: 637 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVV 696

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             A + AC+VH ++ LA+ A  KL+E+      +Y L+SN+YA+   W DVAR+R +M+ 
Sbjct: 697 WVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 756

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV------FGLMEENNVSGH 648
           +   K PGCSW++      +F   DRSHP +  +YA+L ++       G + E N + H
Sbjct: 757 SGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 815



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 238/494 (48%), Gaps = 69/494 (13%)

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-----SGIINCGGNVTPYFRRM 153
           SL   V+  Y+ C A D    + + +     V WN LI      G ++   NV+    RM
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC---RM 153

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           L    R DH T   +L+AC +      G   H  I   GF  N F+ +ALV +Y +CG +
Sbjct: 154 LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 213

Query: 214 EDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRL------EGMKGDYF 264
           E+A  +FDE+  R   D++ WN +VS +  +     A+ +F+ M L         + D  
Sbjct: 214 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 273

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           +  +++ +CG+L +    +++HG  I+     DV V  +L+D YAK G +++A +VF+ M
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 325 TAKNVVSWNTMVVGFGQNGD-----------------------------------GREAV 349
             K+VVSWN MV G+ Q+G+                                     EA+
Sbjct: 334 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 393

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN----------GVQAFL 399
            L R M+     P+ VT+ S+LS+C SL    +  ++HAY++KN          G    L
Sbjct: 394 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 453

Query: 400 SIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + NALI+ YSKC S   A   F  +  +E ++VTWT +IG +A +G S +++++F +M+
Sbjct: 454 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 513

Query: 458 S--HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGR 513
           S  + V P++     +L AC+H   +  G +  +  +  +H    S ++   CL D+  +
Sbjct: 514 SEPYGVAPNAYTISCILMACAHLAAIRIG-KQIHAYVLRHHRYESSAYFVANCLIDMYSK 572

Query: 514 VGLLVEAYDLLASM 527
            G +  A  +  SM
Sbjct: 573 CGDVDTARHVFDSM 586


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 314/548 (57%), Gaps = 14/548 (2%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           ++ SH +K G  +  SL N+++  Y+KC +     K+FDE+  R+IV WN++I+  I  G
Sbjct: 98  KIQSHALKRGFHH--SLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNG 155

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVS 200
                   ++RM+ D +  D  TF+S+ +A      +  G+R H   + +G G+ N FV 
Sbjct: 156 RSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVG 215

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           SALVD+Y K G + DAR V D+V+ +D+VL+  ++  Y+ +     ++ VF  M  +G++
Sbjct: 216 SALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIE 275

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + +T SS++  CG L     GR IHGL++K   +  V   TSL+ MY + G +DD+ +V
Sbjct: 276 ANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKV 335

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL--RDMLQGSFCPDEVTLASILSSCGSLS 378
           F      N V+W +++VG  QNG  RE + LL  R ML+ S  P+  TL+S+L +C SL+
Sbjct: 336 FKQFINPNQVTWTSVIVGLVQNG--REEIALLKFRQMLRSSITPNSFTLSSVLRACSSLA 393

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           +  + +Q+HA  +K G+     +  ALI+ Y KCGS   A   F  + E D+V+  S+I 
Sbjct: 394 MLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIY 453

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           +YA +G   E++++F  M    + P+++ +L VLSAC++ GL+ EG   F+   +  +I 
Sbjct: 454 SYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIE 513

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL--GAFIGACKVHGSIGLAKWAA 556
              +HY C+ DLLGR G L EA  L+  + I   SD +     + AC++HG + +AK   
Sbjct: 514 LTKDHYACMVDLLGRAGRLKEAEMLINQVNI---SDVVIWRTLLSACRIHGDVEMAKRVM 570

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
            ++++L P     + L+SN+YAS   W  V  ++  MR+    K P  SW+++  EIHTF
Sbjct: 571 NRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTF 630

Query: 617 VSSDRSHP 624
           ++ D SHP
Sbjct: 631 MAGDWSHP 638



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 165/313 (52%), Gaps = 9/313 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+ +H  I+K GL + ++ Q  +L +Y +C   DD  K+F +    N VTW ++I G
Sbjct: 294 LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVG 353

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           ++  G        FR+ML  ++  +  T +S+LRAC     +E G+++H+ ++K G  ++
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDID 413

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +V +AL+D YGKCG  E AR VF+ +L  D+V  N M+  YA N  G  A+ +F+ M+ 
Sbjct: 414 KYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKD 473

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNID 315
            G++ +  T+  ++++C   G  + G  I        + +L       +VD+  + G + 
Sbjct: 474 TGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLK 533

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE----VTLASIL 371
           +A  + + +   +VV W T++     +GD   A +++  ++     P++    V L+++ 
Sbjct: 534 EAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVI--DLAPEDGGTHVLLSNLY 591

Query: 372 SSCGSLSISCETR 384
           +S G+ S   E +
Sbjct: 592 ASTGNWSKVIEMK 604



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 57  ESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            S+ + +SF  S  L+  +    L+QGKQ+H+ +MK GL     +   ++  Y KC + +
Sbjct: 372 RSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTE 431

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
               +F+ +   ++V+ N++I        G      F  M    +  +++T+  +L AC 
Sbjct: 432 IARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACN 491

Query: 174 QADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            A  +E G  + S     G   L     + +VDL G+ G +++A  + ++V   D+V+W 
Sbjct: 492 NAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWR 551

Query: 233 VMVSC 237
            ++S 
Sbjct: 552 TLLSA 556


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/579 (31%), Positives = 307/579 (53%), Gaps = 26/579 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A++  A+ G L+ GKQ+H   +K      L + N +L++Y    + +   +LF+ +  R+
Sbjct: 268 AVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRD 327

Query: 129 IVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQ-ADDIEVGRRLH 185
              WN++IS      C       F RM  + V+ D  T   +L  C + A  +  G+ LH
Sbjct: 328 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLH 387

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           + ++K G  ++  + +AL+ +Y +   VE  +++FD +   D++ WN M+   A N L  
Sbjct: 388 AHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA 447

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A  +F  MR   +K + +T  S++ +C  +     GR IHG V+K S +++  + T+L 
Sbjct: 448 QACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALA 507

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY   G+   A  +F+G   ++++SWN M+                         P+ V
Sbjct: 508 DMYMNCGDEATARDLFEGCPDRDLISWNAMIXKAE---------------------PNSV 546

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAF--LSIENALINAYSKCGSIAGALQCFG 423
           T+ ++LSS   L+   + + +HAY  + G      LS+ NA I  Y++CGS+  A   F 
Sbjct: 547 TIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFK 606

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           ++ + ++++W ++I  Y  +G   +++  F +ML    RP+ + F+ VLSACSH G +  
Sbjct: 607 TLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEM 666

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GL+ F+ M+ D+++ P+  HY+C+ DLL R G + EA + + SMPIEP +    A + +C
Sbjct: 667 GLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSC 726

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           + +     AK   EKL +LEP    NY L+SNVYA+   W +V R+R  +++    K PG
Sbjct: 727 RAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPG 786

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            SWI +  ++H F + DRSHPQ+  +YA L  +   M E
Sbjct: 787 ISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRE 825



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 256/501 (51%), Gaps = 23/501 (4%)

Query: 39  KHDRSVLS--SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN 96
           K+D+++LS  +Q+ + G +  +T          LK  A    +++GK +H  I    L +
Sbjct: 39  KNDQAILSAYTQMESLGVLPNNTT-----LPLVLKACAAQNAVERGKSIHRSIQGTDLMD 93

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRML 154
            + +   V+  Y KC   +D   +FD M  R++V WN ++ G +   C        R M 
Sbjct: 94  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMG 153

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFV 213
            +N+R +  T  +LL AC  A ++ +GR +H + L+ G F  N  V++AL+  Y +    
Sbjct: 154 RENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF--- 210

Query: 214 EDAR---RVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSS 268
            D R    +FD ++ R++V WN M+S Y    +GD   A+ +F  M ++ +K D  T   
Sbjct: 211 -DMRVLPLLFDLMVVRNIVSWNAMISGYY--DVGDYFKALELFVQMLVDEVKFDCVTMLV 267

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            V +C  LGS KLG+QIH L IK  F  D+ +  +L++MY+ NG+++ + ++F+ +  ++
Sbjct: 268 AVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRD 327

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS-CETRQVH 387
              WN+M+  +   G   EA+ L   M       DE T+  +LS C  L+    + + +H
Sbjct: 328 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLH 387

Query: 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
           A+ IK+G++   S+ NAL++ Y++   +    + F  +K  D+++W ++I A A + L  
Sbjct: 388 AHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA 447

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507
           ++ E+FE+M    ++P+S   + +L+AC     +  G R  +  +  + I  +    T L
Sbjct: 448 QACELFERMRESEIKPNSYTIISILAACEDVTCLDFG-RSIHGYVMKHSIEINQPLRTAL 506

Query: 508 TDLLGRVGLLVEAYDLLASMP 528
            D+    G    A DL    P
Sbjct: 507 ADMYMNCGDEATARDLFEGCP 527



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 220/460 (47%), Gaps = 40/460 (8%)

Query: 123 EMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           ++++++   WN++I    N   +  +   + +M    V  ++ T   +L+AC   + +E 
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-A 239
           G+ +H  I       +  V +A+VD Y KCGFVEDAR VFD +  RD+VLWN MV  Y  
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDV 298
             C  +  + V  + R E ++ +  T  +L+ +C      +LGR +HG  ++   FD + 
Sbjct: 139 WGCYEEAMLLVREMGR-ENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP 197

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            VAT+L+  Y +  ++     +FD M  +N+VSWN M+ G+   GD  +A++L   ML  
Sbjct: 198 HVATALIGFYLR-FDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVD 256

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
               D VT+   + +C  L      +Q+H  AIK      L I NAL+N YS  GS+  +
Sbjct: 257 EVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESS 316

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-- 476
            Q F SV   D   W S+I AYA  G  +E++++F +M S  V+ D    + +LS C   
Sbjct: 317 HQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEEL 376

Query: 477 ----------HGGLVSEGLR----YFNLMISDYHILPDSEHYTCLTD------------- 509
                     H  ++  G+R      N ++S Y  L   E    + D             
Sbjct: 377 ASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTM 436

Query: 510 --LLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACK 544
              L R  L  +A +L   M    I+P S T+ + + AC+
Sbjct: 437 ILALARNTLRAQACELFERMRESEIKPNSYTIISILAACE 476


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/583 (31%), Positives = 313/583 (53%), Gaps = 40/583 (6%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL 160
           +++ V +    F+   +LFD +   +  T +TLIS +   G        +  +    ++ 
Sbjct: 103 RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 162

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   F +  +AC  + D    + +H    + G   + FV +AL+  YGKC  VE ARRVF
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D+++ RD+V W  + SCY         + VF  M   G+K +  T SS++ +C  L   K
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV--- 337
            G++IHG  ++    +++ V ++LV +YAK  ++ +A  VFD M  ++VVSWN ++    
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 338 -------GFG-------------------------QNGDGREAVKLLRDMLQGSFCPDEV 365
                  GF                          +NG   EAV++ R M +  F P+E+
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 402

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T++SIL +C         +++H Y  ++     L+   AL+  Y+KCG +  +   F  +
Sbjct: 403 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 462

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +  D+V W ++I A A HG  KE++ +F+KML   V+P+S+ F  VLS CSH  LV EG+
Sbjct: 463 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 522

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           + FN M  D+ + PD+ HY+C+ D+  R G L EAY  +  MP+EP +   GA + AC+V
Sbjct: 523 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 582

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           + ++ LAK +A+KL E+EP+ P NY  + N+  + + W + +++R +M++    K PGCS
Sbjct: 583 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 642

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           W+++  ++HTFV  D+S+ ++  +Y  L     L+E+  ++G+
Sbjct: 643 WLQVGNKVHTFVVGDKSNIESDKIYNFLDE---LVEKMKMAGY 682



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 208/421 (49%), Gaps = 61/421 (14%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A K  A  G   + K++H    + G+ + + + N ++H Y KCK  +   ++FD++ VR+
Sbjct: 170 AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 229

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+W +L S  + CG        FR M    V+ + +T +S+L AC +  D++ G+ +H 
Sbjct: 230 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 289

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN----- 241
           F ++ G  +N FV SALV LY KC  V +AR VFD +  RD+V WN +++ Y  N     
Sbjct: 290 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEK 349

Query: 242 --------------------------CLGDG----AIAVFNLMRLEGMKGDYFTFSSLVN 271
                                     C+ +G    A+ +F  M+  G K +  T SS++ 
Sbjct: 350 GFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILP 409

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C    + ++G++IH  V +     D+   T+L+ MYAK G+++ +  VFD M  K+VV+
Sbjct: 410 ACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVA 469

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WNTM++    +G+G+EA+ L   ML     P+ VT   +LS C            H+  +
Sbjct: 470 WNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCS-----------HSRLV 518

Query: 392 KNGVQAFLSI------------ENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIG 438
           + GVQ F S+             + +++ YS+ G +  A +   G   EP    W +++ 
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 439 A 439
           A
Sbjct: 579 A 579



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 152/316 (48%), Gaps = 49/316 (15%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A+   L+ GK++H   ++ G+   L + + ++ +Y KC +  +   +FD M  
Sbjct: 269 SSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPH 328

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQ----ADDIEV 180
           R++V+WN +++           +  F +M  D VR D  T+N+++  C++     + +E+
Sbjct: 329 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 388

Query: 181 GRRLH--------------------SFILKVGFGLNCFV-----------SSALVDLYGK 209
            R++                     S  L++G  ++C+V           ++AL+ +Y K
Sbjct: 389 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 448

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG +  +R VFD +  +D+V WN M+   A++  G  A+ +F+ M L  ++ +  TF+ +
Sbjct: 449 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 508

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA------TSLVDMYAKNGNIDDACRVFDG 323
           ++ C     S+L  +  G+ I  S   D LV       + +VD+Y++ G +++A +   G
Sbjct: 509 LSGC---SHSRLVEE--GVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQG 563

Query: 324 MTAKNVVS-WNTMVVG 338
           M  +   S W  ++  
Sbjct: 564 MPMEPTASAWGALLAA 579


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 291/482 (60%), Gaps = 1/482 (0%)

Query: 162 HITF-NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           H++F + +L+ C +   +  G+  H+ IL +G   +   S+ L+++Y KCG V+ AR+VF
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  R LV WN M+     N   + A+ +   M+ EG     FT SS++ +C    +  
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALS 182

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
             + +H   IK + DL+V VAT+L+D+YAK G + DA  VF+ M  ++VV+W++M  G+ 
Sbjct: 183 ECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYV 242

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           QN    +A+ L R   +     D+  ++S++ +C  L+   E +Q++A   K+G  + + 
Sbjct: 243 QNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIF 302

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + ++LI+ Y+KCG I  + + F  V++ ++V W ++I   + H  S E + +FEKM    
Sbjct: 303 VASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG 362

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + P+ + F+ VLSAC H GLV +G +YF+LM  ++H+ P+  HY+C+ D L R G + EA
Sbjct: 363 LSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEA 422

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           YDL++ +P    +   G+ + +C+ HG++ LA+ AA+KL ++EP    NY L+SN+YA+ 
Sbjct: 423 YDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAAN 482

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W +VA++RK+++++   K  G SWIEI  ++H F+  +R+HP+ V +Y+ L  V   +
Sbjct: 483 GKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDEL 542

Query: 641 EE 642
           ++
Sbjct: 543 QK 544



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 179/318 (56%), Gaps = 2/318 (0%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           SF  + LK+ AK   L QGK  H+ I+ +GL   L   N ++++Y KC + D   ++FDE
Sbjct: 65  SFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDE 124

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  R++V+WNT+I  +   G          +M  +       T +S+L AC     +   
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + LH+F +K    LN FV++AL+D+Y KCG ++DA  VF+ +  R +V W+ M + Y  N
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            + + A+A+F      G+K D F  SS++ +C  L +   G+Q++ L+ K  F  ++ VA
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVA 304

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           +SL+DMYAK G I+++ +VF  +  +NVV WN M+ G  ++    E + L   M Q    
Sbjct: 305 SSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 362 PDEVTLASILSSCGSLSI 379
           P++VT  S+LS+CG + +
Sbjct: 365 PNDVTFVSVLSACGHMGL 382



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 131/242 (54%), Gaps = 3/242 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L + + LH+  +K  +   + +   +L VY KC    D   +F+ M  R++VTW+++ +G
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAG 240

Query: 139 IIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +           FR+     ++ D    +S++ AC     +  G+++++ + K GF  N
Sbjct: 241 YVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSN 300

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV+S+L+D+Y KCG +E++ +VF +V  R++VLWN M+S  + +      + +F  M+ 
Sbjct: 301 IFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQ 360

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ-SFDLDVLVATSLVDMYAKNGNID 315
            G+  +  TF S++++CG +G  + G++   L+ K+     +V   + +VD  ++ G I 
Sbjct: 361 MGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIF 420

Query: 316 DA 317
           +A
Sbjct: 421 EA 422


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 303/585 (51%), Gaps = 40/585 (6%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD-- 122
            YS  LK     G ++ G+ +H    +  L   + L N +L +YVKC    D  K+FD  
Sbjct: 107 MYSVVLKACGLVGEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRI 166

Query: 123 ------------------------------EMRVRNIVTWNTLISGIINCGGNVTPYFR- 151
                                         +M  RN+V+WNT+I+G+   G +    F  
Sbjct: 167 FLRANSTSWNTMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVC 226

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           +M  + ++LD  TF   L+ C  A  +  G+++H ++LK G   +CF  SALVD+Y  C 
Sbjct: 227 KMHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCN 286

Query: 212 FVEDARRVFDEV------LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265
            ++DA R+FD+       +C  LVLWN M+S Y ++     A+ +   +   G   D +T
Sbjct: 287 GLDDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYT 346

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
            SS +  C  L + +LG Q+H L++    +LD +V + LVD+YAK GN+ DA ++F  + 
Sbjct: 347 LSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLP 406

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            K++V+W+ +++G  +      A+ L RDM+      D+  ++++L  C SL+     +Q
Sbjct: 407 KKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQ 466

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           VHA+ IK G +       ALI+ YSKCG +   L  FG V + D+V WT II   A +G 
Sbjct: 467 VHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCWTGIIVGCAQNGR 526

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
           + E++E+F +M+   ++P+ + +L VL+AC H GLV E    F  M  D+ + P  EHY 
Sbjct: 527 ANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYY 586

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
           C+ DLL + G   E   L+A MP +P      + +GAC  H + GL    AE LL   P+
Sbjct: 587 CMVDLLCQAGYFKEVEKLIAEMPFKPDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPN 646

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
            P  Y ++SN Y +   W  ++++R+  +     K  G SWIEI+
Sbjct: 647 DPSIYVMLSNAYGTLGMWDSLSQVREAAK-KLGVKAAGTSWIEIS 690



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 215/456 (47%), Gaps = 40/456 (8%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A++   +   L+QGK  HSH++K G  + + +   ++ +Y       D  KLFDEM V+N
Sbjct: 9   AIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKN 68

Query: 129 IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDH-ITFNSLLRACVQADDIEVGRRLH 185
           IVTW T++S   + G        + RML     + +   ++ +L+AC    +IE+GR +H
Sbjct: 69  IVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIH 128

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALNCLG 244
               +     +  + +AL+D+Y KCG + DAR+VFD +  R +   WN M+S Y    L 
Sbjct: 129 KRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLV 188

Query: 245 DGAIAVFNL------------------------------MRLEGMKGDYFTFSSLVNSCG 274
           + A+ +FN                               M  EG+K D FTF   + +C 
Sbjct: 189 EEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALKTCS 248

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD------GMTAKN 328
             G    G+QIH  V+K   +      ++LVDMY+    +DDA R+FD      G    +
Sbjct: 249 YAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDS 308

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           +V WN+M+ G+  +   R AV ++  +       D  TL+S L  C +L       QVHA
Sbjct: 309 LVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHA 368

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
             + +G +    + + L++ Y+K G++  A + F  + + D+V W+ ++   A   L+  
Sbjct: 369 LIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSL 428

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++ +F  M++  V  D      VL  CS    +  G
Sbjct: 429 ALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTG 464



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 202/429 (47%), Gaps = 49/429 (11%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L HI   + +R C +   ++ G+  HS ++K G+  N +++  LV +Y    F+ DA ++
Sbjct: 3   LKHIV--AAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKL 60

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM---RLEGMKGDYFTFSSLVNSCGTL 276
           FDE+  +++V W  MVS Y  N     AI ++  M   + E   G  F +S ++ +CG +
Sbjct: 61  FDEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNG--FMYSVVLKACGLV 118

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD-------------- 322
           G  +LGR IH    +++ D D+++  +L+DMY K G + DA +VFD              
Sbjct: 119 GEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTM 178

Query: 323 ------------------GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
                              M  +NVVSWNT++ G  +NG  R A++ +  M +     D+
Sbjct: 179 ISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSR-ALQFVCKMHREGIKLDK 237

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-- 422
            T    L +C         +Q+H Y +K+G+++     +AL++ YS C  +  A++ F  
Sbjct: 238 FTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQ 297

Query: 423 -----GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
                GS+ +  LV W S++  Y  H  ++ ++ +  ++       DS      L  C +
Sbjct: 298 YSGGTGSICDS-LVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCIN 356

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
              V  G++   L+++  H L D    + L DL  ++G + +A+ L   +P +      G
Sbjct: 357 LLNVRLGIQVHALIVTSGHEL-DYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSG 415

Query: 538 AFIGACKVH 546
             +G  K+ 
Sbjct: 416 LLMGCAKME 424


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/579 (33%), Positives = 313/579 (54%), Gaps = 13/579 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN------KLSLQNQVLHVYVKCKAF 114
           S H    + LKV+A    L+ G+ +H+H   L + N      K++  N ++++YVKC   
Sbjct: 17  SPHQDPIKLLKVAADAKNLKFGRTIHAH---LTITNHNYRDSKVNQLNSLINLYVKCDEV 73

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLL-DNVRLDHITFNSLLRA 171
               KLFD M  RN+V+W+ L++G +  G    V   F++M++ DN+  +     + + +
Sbjct: 74  SIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISS 133

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C     +E G++ H + LK G   + +V +AL+ LY KC  V  A ++   V   D+  +
Sbjct: 134 CDSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCY 192

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N++V+    +     A+ V  L+  EG++ +  T+ ++   C +L    LG+Q+H  ++K
Sbjct: 193 NLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLK 252

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
              D DV + +S++DMY K GN+      FD + ++NVVSW +++  + QN    EA+ L
Sbjct: 253 SDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNL 312

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              M      P+E T+A + +S   LS  C   Q+HA A K+G++  + + NALI  Y K
Sbjct: 313 FSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFK 372

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
            G I  A   F ++   +++TW +II  ++ HGL KE++ +F+ M++   RP+ + F+ V
Sbjct: 373 SGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGV 432

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           + AC+H  LV EG  YFN ++  + I+P  EHYTC+  LL R G L EA + + S  I  
Sbjct: 433 ILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINW 492

Query: 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591
              +    + AC VH      +  AE LL+LEP     Y L+SN++A  R W  V  +RK
Sbjct: 493 DVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRK 552

Query: 592 MMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
           +MR+    K PG SW+EI    H F S D  HP+A  +Y
Sbjct: 553 LMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIY 591



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 135/286 (47%), Gaps = 4/286 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E     ++ Y    ++ A    +  GKQ+H+ ++K  +   + + + ++ +Y KC   
Sbjct: 216 ISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNV 275

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
                 FD ++ RN+V+W ++I+              F +M +D +  +  T   L  + 
Sbjct: 276 LSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSA 335

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                + +G +LH+   K G   N  V +AL+ +Y K G +  A+ VF  + C +++ WN
Sbjct: 336 AGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWN 395

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            +++ ++ + LG  A+++F  M   G + +Y TF  ++ +C  L     G      ++KQ
Sbjct: 396 AIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQ 455

Query: 293 SFDLDVLV-ATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
              +  L   T +V + +++G +D+A           +VVSW T++
Sbjct: 456 FRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLL 501


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 299/521 (57%), Gaps = 12/521 (2%)

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLR 170
           A      +FDEM  R++V W  ++SG  +  C       FRRML   V  +  T +S+L 
Sbjct: 18  ALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVLT 77

Query: 171 ACV--QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG---FVEDARRVFDEVLC 225
           AC    AD       LH+  ++ G     +V +AL++ Y  C     VE++R++FD +  
Sbjct: 78  ACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGS 137

Query: 226 -RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R    W  MV+ Y+        + +F  M  +G++   FT S  +++C ++ +  +G+Q
Sbjct: 138 GRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQ 197

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H L ++++F+ ++ VA SL+DMY    N+ DA R+FD +  +N+V+WNTM+  + Q  +
Sbjct: 198 LHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQ-CN 256

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
              A++LLR+M   +  P+  TL SI S+C  L+     +QVH  A++      L + NA
Sbjct: 257 HLMALQLLREM---NLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNA 313

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ YSKCGSIA A + F  +   D ++WTS+I  Y  +G + ESI++F  M+   V PD
Sbjct: 314 LVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPD 373

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + FL ++ AC+HGGLV EG  +F  M S+Y++ P+ E Y C+T+LL R G L EA+DL+
Sbjct: 374 HVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLI 433

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP  P     GA +GACK+H ++ L + AA K++E+ P +   Y L++N+YA+   W 
Sbjct: 434 HRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYVLLANIYAAGNKWG 493

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           + A  R+++R     K  G SWI++  +I++F ++D S PQ
Sbjct: 494 EYADTRRLLRGIGSRKEAGTSWIDVTDKIYSFTTADSSSPQ 534



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 189/440 (42%), Gaps = 67/440 (15%)

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G +  AR VFDE+  RD+V W  M+S YA N     A+ +F  M   G+  + FT SS++
Sbjct: 17  GALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVL 76

Query: 271 NSC--GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA---KNGNIDDACRVFDGM- 324
            +C  G          +H + +++  D    V  +L++ YA   +   ++++ ++FD + 
Sbjct: 77  TACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALG 136

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
           + +   SW +MV G+ + G  +  ++L + M+Q        T +  L +C S++  C  +
Sbjct: 137 SGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQ 196

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q+H   ++    A L++ N+LI+ Y  C ++  A + F  + E +LVTW ++I  Y+   
Sbjct: 197 QLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYS--- 253

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HG--------------- 478
                +   + +    ++P+      + SAC+           HG               
Sbjct: 254 -QCNHLMALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCN 312

Query: 479 ---------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-- 527
                    G ++   + FN+M  DY    D   +T +    G  G   E+  L  SM  
Sbjct: 313 ALVDMYSKCGSIANAKKMFNMM--DY---KDKLSWTSMITGYGMNGYANESIQLFTSMIH 367

Query: 528 -PIEPRSDTLGAFIGACKVHGSIGLAKW----AAEKLLELEPSKPVNYALVSNVYASERC 582
             + P        I AC  HG +    W    +      L+P+K + Y  V+N+ A    
Sbjct: 368 AGVHPDHVVFLGLICACN-HGGLVDEGWNFFRSMTSEYNLQPNKEI-YGCVTNLLAR--- 422

Query: 583 WFDVARLRKMMRDNCDHKVP 602
                RLR+    +  H++P
Sbjct: 423 ---AGRLREAF--DLIHRMP 437



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 140/313 (44%), Gaps = 45/313 (14%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S AL   A    L  G+QLH   ++      L++ N ++ +Y  C    D  +LFDE+  
Sbjct: 180 SIALHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPE 239

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           RN+VTWNT+I+    C   +     R +  N++ +  T  S+  AC     +  G+++H 
Sbjct: 240 RNLVTWNTMIAWYSQCNHLMALQLLREM--NLQPNCFTLTSITSACAGLASLRFGQQVHG 297

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             L+  +G +  + +ALVD+Y KCG + +A+++F+ +  +D + W  M++ Y +N   + 
Sbjct: 298 AALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANE 357

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           +I +F  M   G+  D+  F  L+ +C            HG                   
Sbjct: 358 SIQLFTSMIHAGVHPDHVVFLGLICACN-----------HG------------------- 387

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG-----FGQNGDGREAVKLLRDMLQGSFC 361
                G +D+    F  MT++  +  N  + G       + G  REA  L+  M    F 
Sbjct: 388 -----GLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRM---PFA 439

Query: 362 PDEVTLASILSSC 374
           PDE    ++L +C
Sbjct: 440 PDETVWGALLGAC 452



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           AT+L+      G +  A  VFD M  ++VV+W  M+ G+  NG    A+ L R ML    
Sbjct: 6   ATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGV 65

Query: 361 CPDEVTLASILSSC--GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
            P+E TL+S+L++C  G+    CE   +HA A++ GV     + NALI AY+ C    G 
Sbjct: 66  GPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGV 125

Query: 419 ------LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
                     GS +     +WTS++  Y+  G  +  +++F+ M+   +          L
Sbjct: 126 EESRKLFDALGSGRTA--ASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIAL 183

Query: 473 SACS 476
            AC+
Sbjct: 184 HACA 187



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%)

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI +    G++  A   F  + + D+V WT+++  YA +G    ++++F +ML+  V P+
Sbjct: 9   LIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPN 68

Query: 465 SIAFLEVLSACSHGG 479
                 VL+AC  G 
Sbjct: 69  EFTLSSVLTACRGGA 83


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/547 (32%), Positives = 299/547 (54%), Gaps = 35/547 (6%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADD 177
           +F  ++  N + WNT++ G       V+     +++ ++ L  +  TF  LL++C ++  
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD---------------- 221
            E G+++H  +LK+G+  + +V ++L+ +Y + G +EDA +VFD                
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 222 ---------------EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
                          E+  +D+V WN M+S YA       A+ +F  M    ++ D  T 
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
            +++++C    S +LGRQ+H  +    F  ++ +  +L+D+Y+K G ++ AC +F+G++ 
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC 261

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           K+VVSWNT++ G+      +EA+ L ++ML+    P++VT+ SIL +C  L      R +
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWI 321

Query: 387 HAYAIKN--GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           H Y  K    V    S+  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG
Sbjct: 322 HVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 381

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            +    ++F +M  + + PD I F+ +LSACSH G +  G   F  M  DY I P  EHY
Sbjct: 382 RANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHY 441

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+ DLLG  GL  EA +++ +MP+EP      + + AC+ HG++ LA+  A  L+++EP
Sbjct: 442 GCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEP 501

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
             P +Y L+SN+YA+   W +VA++R ++      KVPGCS IEI  E+H F+  D+ HP
Sbjct: 502 ENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHP 561

Query: 625 QAVHMYA 631
           +   +Y 
Sbjct: 562 RNREIYG 568



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 217/444 (48%), Gaps = 45/444 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---------- 119
           LK  AK    ++G+Q+H H++KLG    L +   ++ +Y +    +D  K          
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 120 ---------------------LFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                                +FDE+ V+++V+WN +ISG    G        F+ M+  
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NVR D  T  ++L AC Q+  +E+GR++HS+I   GFG N  + +AL+DLY KCG VE A
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F+ + C+D+V WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 277 GSSKLGRQIHGLVIKQSFDLDVL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+  D+     + TSL+DMYAK G+I+ A +VF+ M  K++ SWN 
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSISCETRQVHAYAI 391
           M+ GF  +G       L   M +    PD++T   +LS+C   G L +    R +     
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLG---RHIFKSMT 429

Query: 392 KN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKES 449
           ++  +   L     +I+     G    A +   ++  EPD V W S++ A   HG + E 
Sbjct: 430 QDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG-NLEL 488

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLS 473
            E F + L   V P++     +LS
Sbjct: 489 AESFARNLM-KVEPENPGSYVLLS 511



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 160/321 (49%), Gaps = 18/321 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ G+Q+HS I   G  + L + N ++ +Y KC   +    LF+ +  +++V+WNTLI G
Sbjct: 214 VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGG 273

Query: 139 I--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
              +N        F+ ML      + +T  S+L AC     I++GR +H +I K    + 
Sbjct: 274 YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVT 333

Query: 197 CFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
              S  ++L+D+Y KCG +E A +VF+ +L + L  WN M+  +A++   +    +F+ M
Sbjct: 334 NAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRM 393

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNG 312
           R  G++ D  TF  L+++C   G   LGR I    + Q +D+   +     ++D+   +G
Sbjct: 394 RKNGIEPDDITFVGLLSACSHSGKLDLGRHIFK-SMTQDYDITPKLEHYGCMIDLLGHSG 452

Query: 313 NIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ------GSFCPDEV 365
              +A  +   M  + + V W +++    ++G+   A    R++++      GS+    V
Sbjct: 453 LFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSY----V 508

Query: 366 TLASILSSCGSLSISCETRQV 386
            L++I ++ G      + R +
Sbjct: 509 LLSNIYATAGEWDEVAKVRAL 529



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 32/242 (13%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  VF  +   N + WNTM+ G+  + D   A+KL   M+     P+  T   +L SC  
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIE-------------------------------NAL 405
                E +Q+H + +K G +  L +                                 AL
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I  Y+  G+I  A + F  +   D+V+W ++I  YA  G  KE++E+F++M+   VRPD 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
              + VLSAC+    V  G R  +  I D+    + +    L DL  + G +  A  L  
Sbjct: 199 GTMVTVLSACAQSRSVELG-RQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 526 SM 527
            +
Sbjct: 258 GL 259


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 308/572 (53%), Gaps = 2/572 (0%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S  S  LK   +   +  G+ LH++ +K  L + + + + +L +Y +    D   ++F E
Sbjct: 109 SVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSE 168

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN VTW  +I+G+++ G       YF  M       D  TF   L+AC     ++ G
Sbjct: 169 MPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYG 228

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           + +H+ ++  GF     V+++L  +Y +CG ++D   +F+ +  RD+V W  ++  Y   
Sbjct: 229 KAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRI 288

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                A+  F  MR   +  +  TF+S+ ++C +L     G Q+H  V+    +  + V+
Sbjct: 289 GQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVS 348

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            S++ MY+  GN+  A  +F GM  ++++SW+T++ G+ Q G G E  K    M Q    
Sbjct: 349 NSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTK 408

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P +  LAS+LS  G++++    RQVHA A+  G++   ++ ++LIN YSKCGSI  A   
Sbjct: 409 PTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMI 468

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           FG     D+V+ T++I  YA HG SKE+I++FEK L    RPDS+ F+ VL+AC+H G +
Sbjct: 469 FGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQL 528

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
             G  YFN+M   Y++ P  EHY C+ DLL R G L +A  ++  M  +         + 
Sbjct: 529 DLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLI 588

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           ACK  G I   + AAE++LEL+P+       ++N+Y+S     + A +RK M+     K 
Sbjct: 589 ACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKE 648

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           PG S I+I   +  FVS DR HPQ+  +Y +L
Sbjct: 649 PGWSSIKIKDCVSAFVSGDRFHPQSEDIYNIL 680



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 210/436 (48%), Gaps = 10/436 (2%)

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYF----RRMLLDNVRLDHITFNSLLRACV 173
            ++FD+M   +IV+W ++I   +    +          R++   V  D    + +L+AC 
Sbjct: 60  RQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACG 119

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           Q+ +I  G  LH++ +K     + +V S+L+D+Y + G ++ + RVF E+  R+ V W  
Sbjct: 120 QSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTA 179

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +++           +  F+ M       D +TF+  + +C  L   K G+ IH  VI + 
Sbjct: 180 IITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRG 239

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
           F   + VA SL  MY + G + D   +F+ M+ ++VVSW +++V + + G   +AV+   
Sbjct: 240 FVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFI 299

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M      P+E T AS+ S+C SLS      Q+H   +  G+   LS+ N+++  YS CG
Sbjct: 300 KMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCG 359

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           ++  A   F  ++  D+++W++IIG Y   G  +E  + F  M     +P   A   +LS
Sbjct: 360 NLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLS 419

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
              +  ++ EG R  + +   + +  +S   + L ++  + G + EA  +        R 
Sbjct: 420 VSGNMAVI-EGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGET---DRD 475

Query: 534 D--TLGAFIGACKVHG 547
           D  +L A I     HG
Sbjct: 476 DIVSLTAMINGYAEHG 491



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 133/268 (49%), Gaps = 2/268 (0%)

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL--EGMKGDYFTFSS 268
           G +  AR+VFD++   D+V W  ++  Y      D A+ +F+ MR+    +  D    S 
Sbjct: 54  GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSV 113

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++ +CG   +   G  +H   +K S    V V +SL+DMY + G ID +CRVF  M  +N
Sbjct: 114 VLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRN 173

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            V+W  ++ G    G  +E +    +M +     D  T A  L +C  L      + +H 
Sbjct: 174 AVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHT 233

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           + I  G    L + N+L   Y++CG +   L  F ++ E D+V+WTS+I AY   G   +
Sbjct: 234 HVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVK 293

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           ++E F KM +  V P+   F  + SAC+
Sbjct: 294 AVETFIKMRNSQVPPNEQTFASMFSACA 321



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 14/173 (8%)

Query: 367 LASILSSCGSLSISCET------RQVHAYAIKNGVQAFLSIE-NALINAYSKCGSIAGAL 419
           + S + +CG++   C T      + V    ++   Q  +  + N+ + +    G++  A 
Sbjct: 1   MISSVRNCGTIQRFCTTSISLLQKPVEENIVRISNQVMVKFDPNSHLRSLINAGNLRAAR 60

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM--LSHAVRPDSIAFLEVLSACSH 477
           Q F  +   D+V+WTSII  Y     S E++ +F  M  + HAV PD+     VL AC  
Sbjct: 61  QVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQ 120

Query: 478 GGLVS--EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
              ++  E L  + +  S   +L      + L D+  RVG + ++  + + MP
Sbjct: 121 SSNIAYGESLHAYAVKTS---LLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMP 170


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 306/520 (58%), Gaps = 36/520 (6%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF-VSSALVDLYG 208
           +  M +   R D+  F ++L+A     D++ G ++H+  +K G+G +   V++ LV++YG
Sbjct: 80  YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 209 KCG--------------------FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           KCG                     V+D++ +F+  + RD+V WN M+S ++ +     A+
Sbjct: 140 KCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL 199

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLVATSLVD 306
           A F LM LEG++ D  T +S++ +C  L    +G++IH  V++ + DL  +  V ++LVD
Sbjct: 200 AFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN-DLIENSFVGSALVD 258

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEV 365
           MY     ++   RVFD +  + +  WN M+ G+ +NG   +A+ L  +M++     P+  
Sbjct: 259 MYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 318

Query: 366 TLASILSSC-GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           T+AS++ +C  SL+   + +++HAYAI+N + + +++ +AL++ Y+KCG +  + + F  
Sbjct: 319 TMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE 378

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-----PDSIAFLEVLSACSHGG 479
           +   +++TW  +I A   HG  +E++E+F+ M++ A R     P+ + F+ V +ACSH G
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           L+SEGL  F  M  D+ + P S+HY C+ DLLGR G L EAY+L+ +MP E   D +GA+
Sbjct: 439 LISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAE--FDKVGAW 496

Query: 540 ---IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
              +GAC++H ++ L + AA+ LL LEP+   +Y L+SN+Y+S   W     +RK MR  
Sbjct: 497 SSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQM 556

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
              K PGCSWIE   E+H F++ D SHPQ+  ++  L T+
Sbjct: 557 GVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETL 596



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 231/429 (53%), Gaps = 37/429 (8%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKC-----KAF----- 114
           +   LK  +    L+ G+Q+H+  +K G   + +++ N ++++Y KC     K F     
Sbjct: 95  FPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNAL 154

Query: 115 ----------DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDH 162
                     DD + LF+    R++V+WNT+IS             +FR M+L+ V LD 
Sbjct: 155 MAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDG 214

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFD 221
           +T  S+L AC   + ++VG+ +H+++L+    + N FV SALVD+Y  C  VE  RRVFD
Sbjct: 215 VTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFD 274

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSC-GTLGSS 279
            +L R + LWN M+S YA N L + A+ +F  ++++ G+  +  T +S++ +C  +L + 
Sbjct: 275 HILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAI 334

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G++IH   I+     D+ V ++LVDMYAK G ++ + RVF+ M  KNV++WN +++  
Sbjct: 335 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 394

Query: 340 GQNGDGREAVKLLRDMLQ-----GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-- 392
           G +G G EA++L ++M+      G   P+EVT  ++ ++C    +  E   +  Y +K  
Sbjct: 395 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-YRMKHD 453

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLV-TWTSIIGAYAFHGLSKESI 450
           +GV+        +++   + G +  A +   ++  E D V  W+S++GA   H  + E  
Sbjct: 454 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ-NVELG 512

Query: 451 EVFEKMLSH 459
           EV  K L H
Sbjct: 513 EVAAKNLLH 521



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 33/340 (9%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLV 305
           AI+ +  M + G + D F F +++ +   L   K G QIH   +K  +    V VA +LV
Sbjct: 76  AISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLV 135

Query: 306 D--------------------MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           +                    MYAK G +DD+  +F+    +++VSWNTM+  F Q+   
Sbjct: 136 NMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRF 195

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS-IENA 404
            EA+   R M+      D VT+AS+L +C  L      +++HAY ++N      S + +A
Sbjct: 196 SEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSA 255

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRP 463
           L++ Y  C  +    + F  +    +  W ++I  YA +GL ++++ +F +M+  A + P
Sbjct: 256 LVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLP 315

Query: 464 DSIAFLEVLSACSHG-GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           ++     V+ AC H    +++G       I +  +  D    + L D+  + G L  +  
Sbjct: 316 NTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRR 374

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           +   MP      T    I AC +HG         E+ LEL
Sbjct: 375 VFNEMP-NKNVITWNVLIMACGMHGK-------GEEALEL 406



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 21/173 (12%)

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +++  SW   +    ++ D REA+    +M      PD     ++L +   L       Q
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 386 VHAYAIKNGV-QAFLSIENALINAYSKCGSIA------GALQC--------------FGS 424
           +HA A+K G   + +++ N L+N Y KCG I        AL                F S
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFES 173

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
             + D+V+W ++I +++      E++  F  M+   V  D +    VL ACSH
Sbjct: 174 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 226



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 104/209 (49%), Gaps = 14/209 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-- 136
           + +GK++H++ ++  L + +++ + ++ +Y KC   +   ++F+EM  +N++TWN LI  
Sbjct: 334 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 393

Query: 137 SGIINCGGNVTPYFRRMLLD-----NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            G+   G      F+ M+ +       + + +TF ++  AC  +  I  G  L  + +K 
Sbjct: 394 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-YRMKH 452

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMV-SCYALNCLGDG 246
             G+       + +VDL G+ G +E+A  + + +      +  W+ ++ +C     +  G
Sbjct: 453 DHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELG 512

Query: 247 AIAVFNLMRLE-GMKGDYFTFSSLVNSCG 274
            +A  NL+ LE  +   Y   S++ +S G
Sbjct: 513 EVAAKNLLHLEPNVASHYVLLSNIYSSAG 541


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 206/643 (32%), Positives = 331/643 (51%), Gaps = 16/643 (2%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHI 89
           T    +AQ+ D    ++  R    +    H  + F  +  LK++           +HS  
Sbjct: 132 TLVQAHAQRGDFEAAAALFRR---LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCA 188

Query: 90  MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVT 147
            KLG  +   + + ++  Y  C    D E +F+ +  ++ V W  ++S     +C  N  
Sbjct: 189 WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAF 248

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
             F +M +   + +     S+L+A V    + +G+ +H   +K        V  AL+D+Y
Sbjct: 249 RVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMY 308

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTF 266
            KCG ++DAR  F+ +   D++L + M+S YA +   + A  +F  LMR   +  +Y + 
Sbjct: 309 AKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEY-SL 367

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           SS++ +C  +     G+QIH   IK   + D+ V  +L+D YAK  ++D + ++F  +  
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
            N VSWNT+VVGF Q+G G EA+ +  +M        +VT +S+L +C S +      Q+
Sbjct: 428 ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQI 487

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H    K+       I N+LI+ Y+KCG I  AL+ F  + E D+++W +II  YA HG +
Sbjct: 488 HCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQA 547

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
            +++E+F++M    V  + I F+ +LS CS  GLV+ GL  F+ M  D+ I P  EHYTC
Sbjct: 548 ADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC 607

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           +  LLGR G L +A   +  +P  P +    A + +C +H ++ L +++AEK+LE+EP  
Sbjct: 608 IVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQD 667

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
              Y L+SN+YA+      VA LRK MR+    KVPG SW+EI GEIH F      HP  
Sbjct: 668 ETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDM 727

Query: 627 VHMYAML------CTVFGLMEENNVSGHCNVLDKEMDECTLWL 663
             + AML       +  G + + NV  H   +DKE     LW+
Sbjct: 728 RVINAMLEWLNLKTSREGYIPDINVVLH--DVDKEQKTRMLWV 768



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 220/404 (54%), Gaps = 4/404 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           G  + G+ +H H+++ G   +L L   N +L++Y K        +LFD M  RN+V++ T
Sbjct: 73  GDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVT 132

Query: 135 LISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           L+      G        FRR+  +   ++     ++L+  +  D   +   +HS   K+G
Sbjct: 133 LVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG 192

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV S L+D Y  C  V DA  VF+ ++ +D V+W  MVSCY+ N   + A  VF+
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR+ G K + F  +S++ +   L S  LG+ IHG  IK   D +  V  +L+DMYAK G
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +I DA   F+ +   +V+  + M+  + Q+    +A +L   +++ S  P+E +L+S+L 
Sbjct: 313 DIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQ 372

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C ++      +Q+H +AIK G ++ L + NAL++ Y+KC  +  +L+ F S+++ + V+
Sbjct: 373 ACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVS 432

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           W +I+  ++  GL +E++ VF +M +  +    + +  VL AC+
Sbjct: 433 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA 476



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 153/311 (49%), Gaps = 2/311 (0%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           L+ C+   D   GR +H  +++ G    L+ F ++ L+++YGK G +  ARR+FD +  R
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           ++V +  +V  +A     + A A+F  +R EG + + F  ++++     + ++ L   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
               K   D +  V + L+D Y+    + DA  VF+G+  K+ V W  MV  + +N    
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
            A ++   M      P+   L S+L +   L      + +H  AIK        +  AL+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y+KCG I  A   F  +   D++  + +I  YA    ++++ E+F +++  +V P+  
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEY 365

Query: 467 AFLEVLSACSH 477
           +   VL AC++
Sbjct: 366 SLSSVLQACTN 376


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 307/567 (54%), Gaps = 26/567 (4%)

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTP----YFRRMLLDNVRLDHITFN------ 166
           +E +F++   R  V WN+++S +  CG +++      FR   L   +      N      
Sbjct: 51  LEIVFNQQLTRLAVPWNSIVSPV-RCGTSISHNRSFAFRHTDLIPKQFKRFNTNKGCCIF 109

Query: 167 --------------SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
                         SL+ A      +     +H+ ++K     + F+   LV +Y K G+
Sbjct: 110 REASQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGY 169

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVN 271
            EDA+R+FDE+  +DLV WN ++S  +        +  F  MR E G + +  T  S+V+
Sbjct: 170 DEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVS 229

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C  +G+   G+ +HG+V+K        V  SL++MY K G +D A ++F+ M  +++VS
Sbjct: 230 ACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVS 289

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN+MVV    NG   + + L   M +    PD+ T+ ++L +C    +  +   +HAY  
Sbjct: 290 WNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIH 349

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           + G  A + I  AL+N Y+K G +  +   F  +K+ D + WT+++  YA H   +E+I+
Sbjct: 350 RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIK 409

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F+ M+   V  D + F  +LSACSH GLV EG +YF +M   Y + P  +HY+C+ DLL
Sbjct: 410 LFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLL 469

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
           GR G L +AY+L+ SMP+EP S   GA +GAC+V+G++ L K  AE+LL L+PS   NY 
Sbjct: 470 GRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYI 529

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           ++SN+Y++   W D +++R +M++    + PGCS+IE   +IH FV  D+ HP++  ++ 
Sbjct: 530 MLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHT 589

Query: 632 MLCTVFGLMEENNVSGHCNVLDKEMDE 658
            L  +   + E   +     +  ++DE
Sbjct: 590 KLEELIRKIREAGCAPKTEFVLHDIDE 616



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 206/379 (54%), Gaps = 5/379 (1%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG- 143
           +H+ ++K    +   + ++++ +Y K    +D ++LFDEM  +++V+WN+L+SG+   G 
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200

Query: 144 -GNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            G     F RM  ++ R  + +T  S++ AC     ++ G+ LH  ++K+G      V +
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 260

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +L+++YGK GF++ A ++F+E+  R LV WN MV  +  N   +  + +FNLM+  G+  
Sbjct: 261 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 320

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T  +L+ +C   G  +    IH  + +  F+ D+++AT+L+++YAK G ++ +  +F
Sbjct: 321 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 380

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           + +  ++ ++W  M+ G+  +  GREA+KL   M++     D VT   +LS+C    +  
Sbjct: 381 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 440

Query: 382 ETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
           E ++      +   V+  L   + +++   + G +  A +   S+  EP    W +++GA
Sbjct: 441 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 500

Query: 440 YAFHGLSKESIEVFEKMLS 458
              +G  +   EV E++LS
Sbjct: 501 CRVYGNVELGKEVAEQLLS 519



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 144/260 (55%), Gaps = 15/260 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L +GK LH  ++KLG+  K  + N ++++Y K    D   +LF+EM VR++V+WN
Sbjct: 232 ADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWN 291

Query: 134 TLISGIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR---LHSF 187
           +++  I N  G        F  M    +  D  T  +LLRAC    D  +GR+   +H++
Sbjct: 292 SMVV-IHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT---DTGLGRQAESIHAY 347

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I + GF  +  +++AL++LY K G +  +  +F+E+  RD + W  M++ YA++  G  A
Sbjct: 348 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 407

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR---QIHGLVIKQSFDLDVLVATSL 304
           I +F+LM  EG++ D+ TF+ L+++C   G  + G+   +I   V +    LD    + +
Sbjct: 408 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCM 465

Query: 305 VDMYAKNGNIDDACRVFDGM 324
           VD+  ++G ++DA  +   M
Sbjct: 466 VDLLGRSGRLEDAYELIKSM 485



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+     G  +Q + +H++I + G    + +   +L++Y K    +  E +F+E++ R+ 
Sbjct: 329 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 388

Query: 130 VTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR---L 184
           + W  +++G  +  CG      F  M+ + V +DH+TF  LL AC  +  +E G++   +
Sbjct: 389 IAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEI 448

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            S + +V   L+ +  S +VDL G+ G +EDA
Sbjct: 449 MSEVYRVEPRLDHY--SCMVDLLGRSGRLEDA 478


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/570 (34%), Positives = 306/570 (53%), Gaps = 30/570 (5%)

Query: 61  SAHSFYSQALKVSAKF-----GFLQQ---------GKQLHSHIMKLGLCNKLSLQNQVLH 106
           S  SF S++   S K       FLQ+         G  +H+  +K  L   L   N VL+
Sbjct: 199 SRKSFVSKSENSSVKLEDFYVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLN 258

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD-NVRLDHI 163
            YVKC       +LFDEM  RN+V+W+ +I+G +  G        F RM  D  +  +  
Sbjct: 259 FYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEF 318

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T  S L AC     +    ++++FI+++G+G N F+ +A +    +   + +A  VF+  
Sbjct: 319 TLVSALHACSLTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESC 378

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNL------MRLEGMKGDYFTFSSLVNSCGTLG 277
           L +D V WN M++ Y         +A F L      M LE +K D FTF+S++     L 
Sbjct: 379 LSKDTVSWNAMMAGYL-------QLAYFELPKFWRRMNLESVKPDNFTFASILTGLAALS 431

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             +LG Q+HG ++K  +  D+ V  SL DMY KN  + D  + FD M++ +V SW  M  
Sbjct: 432 EFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAA 491

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G  Q G+  +A++++ +M       ++ TLA+ L+SC +L+   E ++ H   IK G   
Sbjct: 492 GCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDV 551

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + ++NAL++ Y+KCG +  A   F S+ E  +V+WT++I  +A +G +KE++++F++M 
Sbjct: 552 DVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMR 611

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
                P+ I F+ VL+ACS GG + E  +YF+ M +D+ I P  +HY C+ +LLGR G +
Sbjct: 612 KGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCI 671

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA DL+  MP +P S      +GAC VHG I   K AAE  L L+ + P  Y L+SN++
Sbjct: 672 KEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMF 731

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           A    W  V  LR++M      KVPG SW+
Sbjct: 732 AGGDNWDSVGILRELMETRDVKKVPGSSWM 761



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 144/325 (44%), Gaps = 45/325 (13%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           ES    +  ++  L   A     + G Q+H  ++K G  N + + N +  +YVK +   D
Sbjct: 411 ESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLD 470

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDN--VRLDHITFNSLLRACVQ 174
             K FDEM   ++ +W  + +G + CG  +        + N  VRL+  T  + L +C  
Sbjct: 471 GFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCAN 530

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
              IE G++ H   +K+G  ++  V +AL+D+Y KCG +  A  VF  +  R +V W  M
Sbjct: 531 LASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTM 590

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           +  +A N     A+ +F+ MR    + ++ TF  ++N+C                     
Sbjct: 591 IMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNAC--------------------- 629

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-----WNTMVVGFGQNGDGREAV 349
                         ++ G ID+A + F  M+A + ++     +  MV   G+ G  +EA 
Sbjct: 630 --------------SQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAE 675

Query: 350 KLLRDMLQGSFCPDEVTLASILSSC 374
            L+   LQ  F P  +   ++L +C
Sbjct: 676 DLI---LQMPFQPGSLVWQTLLGAC 697


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/581 (31%), Positives = 317/581 (54%), Gaps = 10/581 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL    +   L  GK LH  ++  GL  ++ L N ++ +Y KC   D    LFD   
Sbjct: 152 YAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCN 211

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRAC---VQADDIEV 180
            R+ V+WN+LISG +  G    P     +M    ++L      S+L+AC   +    +E 
Sbjct: 212 ERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEK 271

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY-A 239
           G  +H +  K+G   +  V +AL+D+Y K G +++A ++F  +  +++V +N M+S +  
Sbjct: 272 GMAIHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQ 331

Query: 240 LNCLGDGA----IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           ++ + D A      +F  M+  G++    TFS ++ +C    + + GRQIH L+ K +F 
Sbjct: 332 MDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQ 391

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  + ++L+++YA  G+ +D  + F   + +++ SW +++    QN     A  L R +
Sbjct: 392 SDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQL 451

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
                 P+E T++ ++S+C   +      Q+  YAIK+G+ A+ S++ + I+ Y+K G++
Sbjct: 452 FSSPIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNM 511

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + F  V+ PD+ T++++I + A HG + +++ +FE M +  ++P+  AFL VL AC
Sbjct: 512 PLANKVFIEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIAC 571

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
            HGGLV+ G+ YF  M + Y I P+ +H+TCL DLLGR G L +A +L+ S   +     
Sbjct: 572 CHGGLVTHGVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVM 631

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             A + +C+V+    + K  AE+L+ELEP    +Y L+ N+Y           +R++MRD
Sbjct: 632 WRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRD 691

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
               K P  SWI +  + H+F  +D SHP +  +Y ML T+
Sbjct: 692 RGVKKEPALSWIVLGNQTHSFAVADWSHPSSQMIYTMLDTM 732



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 243/497 (48%), Gaps = 20/497 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y +  + +AK G L  GK  H H++K  L   L L N +L++Y KC+      +LFD M 
Sbjct: 51  YKKLFQTAAKSGSLVLGKLAHGHMVKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMP 110

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RNI+++N+LISG    G        F     DN++LD  T+   L  C +  D++ G+ 
Sbjct: 111 ERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKL 170

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  ++  G     F+ + L+D+Y KCG ++ A  +FD    RD V WN ++S Y     
Sbjct: 171 LHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGA 230

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG---TLGSSKLGRQIHGLVIKQSFDLDVLV 300
            +  + +   M   G+K   +   S++ +C      G  + G  IH    K   + D++V
Sbjct: 231 AEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVV 290

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----GREAVKLLRDM 355
            T+L+DMYAKNG++ +A ++F  M AKNVV++N M+ GF Q  D       EA KL  +M
Sbjct: 291 RTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEM 350

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            +    P   T + +L +C +       RQ+HA   KN  Q+   I +ALI  Y+  GS 
Sbjct: 351 QRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGST 410

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
              +QCF S  + D+ +WTSII  +  +   + + ++F ++ S  +RP+      ++SAC
Sbjct: 411 EDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSAC 470

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT----DLLGRVGLLVEAYDLLASMPIEP 531
           +    +S G +     I  Y I    + YT +      +  + G +  A  +   +   P
Sbjct: 471 ADFAALSSGEQ-----IQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQ-NP 524

Query: 532 RSDTLGAFIGACKVHGS 548
              T  A I +   HGS
Sbjct: 525 DVATYSAMISSLAQHGS 541



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 194/428 (45%), Gaps = 41/428 (9%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N  LD   +  L +   ++  + +G+  H  ++K       ++ + L+++Y KC  +  A
Sbjct: 43  NTALDSEAYKKLFQTAAKSGSLVLGKLAHGHMVKSSLNPCLYLLNNLLNMYCKCRELGFA 102

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R++FD +  R+++ +N ++S Y      + A+ +F   R + +K D FT++  +  CG  
Sbjct: 103 RQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGER 162

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                G+ +HGLV+       V +   L+DMY+K G +D A  +FD    ++ VSWN+++
Sbjct: 163 CDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLI 222

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG---SLSISCETRQVHAYAIKN 393
            G+ + G   E + LL  M +         L S+L +C    +  +  +   +H YA K 
Sbjct: 223 SGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKL 282

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY-----AFHGLSKE 448
           G++  + +  AL++ Y+K GS+  A++ F  +   ++VT+ ++I  +          S E
Sbjct: 283 GMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSE 342

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL---------------MIS 493
           + ++F +M    + P    F  VL ACS    +  G +   L               +I 
Sbjct: 343 AFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIE 402

Query: 494 DYHILPDSE---------------HYTCLTDLLGRVGLLVEAYDL---LASMPIEPRSDT 535
            Y ++  +E                +T + D   +   L  A+DL   L S PI P   T
Sbjct: 403 LYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYT 462

Query: 536 LGAFIGAC 543
           +   + AC
Sbjct: 463 VSLMMSAC 470



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +S  LK  +    L+ G+Q+H+ I K    +   + + ++ +Y    + +D  + F  
Sbjct: 360 STFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFAS 419

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
              ++I +W ++I   +      + +  FR++    +R +  T + ++ AC     +  G
Sbjct: 420 TSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFAALSSG 479

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            ++  + +K G      V ++ + +Y K G +  A +VF EV   D+  ++ M+S  A +
Sbjct: 480 EQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQNPDVATYSAMISSLAQH 539

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL----VIKQSFDLD 297
                A+ +F  M+  G+K +   F  ++ +C        G   HG+     +K S+ ++
Sbjct: 540 GSAHDALNIFESMKTRGIKPNQQAFLGVLIAC-----CHGGLVTHGVNYFQTMKNSYGIN 594

Query: 298 VLVA--TSLVDMYAKNGNIDDA 317
                 T L D+  + G + DA
Sbjct: 595 PNEKHFTCLADLLGRTGRLSDA 616


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/567 (33%), Positives = 303/567 (53%), Gaps = 11/567 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK +++   +    +LH +I+K    +   L + V   Y KC    D  K+FDE+ 
Sbjct: 138 FSILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTSLV-DAYSKCGKLRDARKVFDEIP 196

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W ++I   +   C       F RM    +  +  T  SL+ AC +   +  G+ 
Sbjct: 197 DRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKW 256

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR------DLVLWNVMVSC 237
           +H +++K G  +N +++++L+++Y KCG + DAR VFDE          DLV W  M+  
Sbjct: 257 VHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVG 316

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           Y        A+ +F   +   +  +  T +SL+++C  L +  +G+ +H LV+K   D D
Sbjct: 317 YTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-D 375

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
             +  SLVDMYAK G I DA  VF     K+VVSWN+++ G+ Q+G   EA+ L   M  
Sbjct: 376 TSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRM 435

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIA 416
            SF PD VT+  +LS+C S+        +H +A+K G V + + +  AL+N Y+KCG   
Sbjct: 436 ESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDAT 495

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  + E + VTW ++IG     G    S+ +F  ML   + P+ + F  +L+ACS
Sbjct: 496 SARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACS 555

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H G+V EGL  F+ M  + + +P  +HY C+ DLL R G L EA D +  MP++P     
Sbjct: 556 HSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVF 615

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GAF+  C +H +    + A  ++LEL P +   Y L+SN+YAS+  W  V  +R+M++  
Sbjct: 616 GAFLHGCGLHSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQR 675

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSH 623
             +KVPG S +E+     T V+  +SH
Sbjct: 676 GLNKVPGVSLVEMDVNNTTHVNVLQSH 702



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 135/394 (34%), Positives = 208/394 (52%), Gaps = 11/394 (2%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D + F+ LL+   Q  DI +  +LH  ILK     + FV ++LVD Y KCG + DAR+VF
Sbjct: 134 DLVVFSILLKTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARKVF 192

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           DE+  R +V W  M+  Y  N   +  + +FN MR   + G+ FT  SLV +C  LG   
Sbjct: 193 DEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLH 252

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK------NVVSWNT 334
            G+ +HG VIK   +++  +ATSL++MY K G+I DA  VFD  +        ++V W  
Sbjct: 253 QGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTA 312

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+VG+ Q G  + A++L  D       P+ VTLAS+LS+C  L      + +H   +K G
Sbjct: 313 MIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYG 372

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +    S+ N+L++ Y+KCG I  A   F +  + D+V+W S+I  YA  G + E++++F 
Sbjct: 373 LDD-TSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFN 431

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY-TCLTDLLGR 513
           +M   +  PD++  + VLSAC+  G    GL      +  Y ++  S +  T L +   +
Sbjct: 432 RMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALK-YGLVSSSIYVGTALLNFYAK 490

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            G    A  +   M  E  + T  A IG C + G
Sbjct: 491 CGDATSARMVFDGMG-EKNAVTWAAMIGGCGMQG 523



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 166/333 (49%), Gaps = 10/333 (3%)

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GM 259
           + L+ LY   GF+  AR +F  +       + +++  + LN +    ++ +NL R   G 
Sbjct: 72  TTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGS 131

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D   FS L+ +   L    L  ++H  ++K +   D  V TSLVD Y+K G + DA +
Sbjct: 132 FNDLVVFSILLKTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARK 190

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VFD +  ++VVSW +M+V + QN    E + L   M +G    +  T+ S++++C  L  
Sbjct: 191 VFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGC 250

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP------DLVTW 433
             + + VH Y IKNG++    +  +L+N Y KCG I  A   F            DLV W
Sbjct: 251 LHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFW 310

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T++I  Y   G  + ++E+F     + + P+S+    +LSAC+    +  G +  ++++ 
Sbjct: 311 TAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMG-KLLHVLVV 369

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            Y  L D+     L D+  + GL+ +A+ + A+
Sbjct: 370 KYG-LDDTSLRNSLVDMYAKCGLIPDAHYVFAT 401


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/535 (34%), Positives = 294/535 (54%), Gaps = 7/535 (1%)

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRR 183
           R+  ++N LI   +  G   +    F  ML D  V  D  T  + +++C +  D+ VGR 
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           + ++  K GF ++ FV ++L+ +Y  CG V  A  +F  V  + ++ WN M++ Y  N  
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               + +F  M       D  T  S+  +CG LG + LG+ I     ++       +AT+
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATA 312

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMYAK G +D A R+FD M +++VV+W+ M+ G+ Q+   REA+ +  +M      P+
Sbjct: 313 LVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPN 372

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           +VT+ S+LS+C  L      + VH+Y  +  +   + +  AL++ Y+KCG I  A++ F 
Sbjct: 373 DVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFE 432

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
           S+   +  TWT++I   A +G S+E++E+F  ML   + P  + F+ VL ACSHG LV E
Sbjct: 433 SMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEE 492

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G R+F  M  DY I P  EHY C+ DLLGR GL+ EAY  + +MPIEP +    A + AC
Sbjct: 493 GRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSAC 552

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
            VH ++ + + A ++++ L+P    NY L+SN YAS   W + A +RK M++    K+PG
Sbjct: 553 TVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPG 612

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHC-NVLDKEMD 657
           CS IE+ G I  F + D  HPQ   +Y     V  ++E   + G+  N  D  +D
Sbjct: 613 CSLIELEGTIFEFFAEDSEHPQLTEIYE---KVHEMIENIKMVGYIPNTADARLD 664



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 205/402 (50%), Gaps = 8/402 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  +K  ++   L  G+ + ++  K G      + N ++H+Y  C        LF  ++V
Sbjct: 175 ANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQV 234

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           + ++ WN +I+G +  G    V   F+ ML      D +T  S+  AC +  D  +G+ +
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI 294

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
             +  + G   +  +++ALVD+Y KCG ++ ARR+FD +  RD+V W+ M+S Y  +   
Sbjct: 295 AEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRC 354

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+A+FN M+   +  +  T  S++++C  LG+ + G+ +H  + ++   L V++ T+L
Sbjct: 355 REALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTAL 414

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           VD YAK G I DA + F+ M  +N  +W  ++ G   NG  REA++L   ML+ +  P +
Sbjct: 415 VDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTD 474

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFG 423
           VT   +L +C    +  E R+      ++ G+   +     +++   + G I  A Q   
Sbjct: 475 VTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIR 534

Query: 424 SVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           ++  EP+ V W +++ A   H    +++E+ E+ L   V  D
Sbjct: 535 NMPIEPNAVVWRALLSACTVH----KNVEIGEEALKQIVPLD 572



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L+ GK +HS+I +  L   + L   ++  Y KC    D  K F+ M VRN 
Sbjct: 380 LSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNT 439

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            TW  LI G+ + G +      F  ML  N+    +TF  +L AC     +E GRR H  
Sbjct: 440 WTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRR-HFT 498

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCL 243
            +   +G+   +     +VDL G+ G +++A +    + +  + V+W  ++S C     +
Sbjct: 499 SMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNV 558

Query: 244 GDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQ 284
             G  A+  ++ L+    G+Y   S+   S G   ++ + R+
Sbjct: 559 EIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRK 600


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 178/571 (31%), Positives = 318/571 (55%), Gaps = 4/571 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKL-GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           Y+  L   A    L++GK +HS I    GL   + L+N +L +Y KC + +D ++LF+ M
Sbjct: 124 YTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM 183

Query: 125 R-VRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              R++ +WN +I+     G +     R     +V     TF S+L AC     ++ GR+
Sbjct: 184 SGRRSVSSWNAMIAAYAQSG-HFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRK 242

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ I   G  L+  + +AL+ +Y +C  ++DA ++F  +  RD+V W+ M++ +A   L
Sbjct: 243 IHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDL 302

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            D AI  ++ M+LEG++ +Y+TF+S++ +C ++G  + GR +H  ++   + + ++  T+
Sbjct: 303 FDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTA 362

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP- 362
           LVD+Y   G++D+A  +FD +  ++   W  ++ G+ + G     ++L R+M   +  P 
Sbjct: 363 LVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPA 422

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
            ++  + ++S+C SL    + RQ H+    +G+ +   +  +L+N YS+ G++  A Q F
Sbjct: 423 TKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVF 482

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +   D + WT++I  YA HG    ++ ++++M      P  + F+ VL ACSH GL  
Sbjct: 483 DKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQE 542

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +G + F  + SDY + P+  HY+C+ DLL R G L +A +L+ +MP+EP   T  + +GA
Sbjct: 543 QGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGA 602

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
            ++H  +  A  AA ++ +L+P  P +Y L+SNV+A       +A +R  M      K  
Sbjct: 603 SRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRR 662

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           G SWIE+A +IH F   D SHP+   ++A L
Sbjct: 663 GSSWIEVADQIHEFNVGDNSHPRFQEIFAEL 693



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 250/507 (49%), Gaps = 19/507 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+  +Q+H  I      N + L N+++  Y KC +       FD +  +N  +W ++++ 
Sbjct: 40  LESVRQIHDRISGAASAN-VFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTA 98

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV-GFGL 195
               G        ++RM   +++ + + + ++L AC   + +E G+ +HS I    G  L
Sbjct: 99  YAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKL 155

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVSCYALNCLGDGAIAVFNLM 254
           +  + ++L+ +Y KCG +EDA+R+F+ +  R  V  WN M++ YA +   + AI ++  M
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM 215

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
            +E       TF+S++++C  LG    GR+IH L+  +  +LD+ +  +L+ MYA+   +
Sbjct: 216 DVE---PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCL 272

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           DDA ++F  +  ++VVSW+ M+  F +     EA++    M      P+  T AS+L +C
Sbjct: 273 DDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLAC 332

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            S+      R VH   + NG +  L    AL++ Y+  GS+  A   F  ++  D   WT
Sbjct: 333 ASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWT 392

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +IG Y+  G     +E++ +M +    P + I +  V+SAC+  G  ++  +  + + +
Sbjct: 393 VLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEA 452

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFIGACKVHGSIGL 551
           D  ++ D    T L ++  R G L  A  +   M      DTL     I     HG  GL
Sbjct: 453 D-GMISDFVLATSLVNMYSRWGNLESARQVFDKM---SSRDTLAWTTLIAGYAKHGEHGL 508

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYA 578
           A     K +ELE ++P     +  +YA
Sbjct: 509 A-LGLYKEMELEGAEPSELTFMVVLYA 534



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 196/375 (52%), Gaps = 17/375 (4%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +   LR C    D+E  R++H  I       N F+ + +V  YGKCG V  AR  FD + 
Sbjct: 30  YRDALRQC---QDLESVRQIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARVAFDAIA 85

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            ++   W  M++ YA N     A+ ++  M L+    +   +++++ +C ++ + + G+ 
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIEALEEGKA 142

Query: 285 IHGLVI-KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQN 342
           IH  +   +   LDV++  SL+ MYAK G+++DA R+F+ M+  ++V SWN M+  + Q+
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQS 202

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   EA++L  DM      P   T  S+LS+C +L +  + R++HA     G +  LS++
Sbjct: 203 GHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQ 259

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           NAL+  Y++C  +  A + F  +   D+V+W+++I A+A   L  E+IE + KM    VR
Sbjct: 260 NALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVR 319

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISD-YHILPDSEHYTCLTDLLGRVGLLVEAY 521
           P+   F  VL AC+  G +  G    + ++ + Y I     + T L DL    G L EA 
Sbjct: 320 PNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL--VNGTALVDLYTSYGSLDEAR 377

Query: 522 DLLASMPIEPRSDTL 536
            L     IE R + L
Sbjct: 378 SLFDQ--IENRDEGL 390


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/568 (32%), Positives = 305/568 (53%), Gaps = 37/568 (6%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL 160
           +++ V +    F+   +LFD +   +  T +TLIS +   G        +  +    ++ 
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D   F +  +AC  + D    + +H    + G   + FV +AL+  YGKC  VE ARRVF
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D+++ RD+V W  + SCY         + VF  M   G+K +  T SS++ +C  L   K
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV--- 337
            G++IHG  ++    +++ V ++LV +YAK  ++ +A  VFD M  ++VVSWN ++    
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 338 -------GFG-------------------------QNGDGREAVKLLRDMLQGSFCPDEV 365
                  GF                          +NG   EAV++ R M +  F P+E+
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 316

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T++SIL +C         +++H Y  ++     L+   AL+  Y+KCG +  +   F  +
Sbjct: 317 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 376

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +  D+V W ++I A A HG  KE++ +F+KML   V+P+S+ F  VLS CSH  LV EG+
Sbjct: 377 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 436

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           + FN M  D+ + PD+ HY+C+ D+  R G L EAY  +  MP+EP +   GA + AC+V
Sbjct: 437 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 496

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           + ++ LAK +A+KL E+EP+ P NY  + N+  + + W + +++R +M++    K PGCS
Sbjct: 497 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 556

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           W+++  ++HTFV  D+S+ ++  +Y  L
Sbjct: 557 WLQVGNKVHTFVVGDKSNIESDKIYNFL 584



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 208/421 (49%), Gaps = 61/421 (14%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A K  A  G   + K++H    + G+ + + + N ++H Y KCK  +   ++FD++ VR+
Sbjct: 84  AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 143

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V+W +L S  + CG        FR M    V+ + +T +S+L AC +  D++ G+ +H 
Sbjct: 144 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 203

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN----- 241
           F ++ G  +N FV SALV LY KC  V +AR VFD +  RD+V WN +++ Y  N     
Sbjct: 204 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEK 263

Query: 242 --------------------------CLGDG----AIAVFNLMRLEGMKGDYFTFSSLVN 271
                                     C+ +G    A+ +F  M+  G K +  T SS++ 
Sbjct: 264 GFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILP 323

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C    + ++G++IH  V +     D+   T+L+ MYAK G+++ +  VFD M  K+VV+
Sbjct: 324 ACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVA 383

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WNTM++    +G+G+EA+ L   ML     P+ VT   +LS C            H+  +
Sbjct: 384 WNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCS-----------HSRLV 432

Query: 392 KNGVQAFLSI------------ENALINAYSKCGSIAGALQCF-GSVKEPDLVTWTSIIG 438
           + GVQ F S+             + +++ YS+ G +  A +   G   EP    W +++ 
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 492

Query: 439 A 439
           A
Sbjct: 493 A 493



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 152/316 (48%), Gaps = 49/316 (15%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A+   L+ GK++H   ++ G+   L + + ++ +Y KC +  +   +FD M  
Sbjct: 183 SSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPH 242

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQ----ADDIEV 180
           R++V+WN +++           +  F +M  D VR D  T+N+++  C++     + +E+
Sbjct: 243 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 302

Query: 181 GRRLH--------------------SFILKVGFGLNCFV-----------SSALVDLYGK 209
            R++                     S  L++G  ++C+V           ++AL+ +Y K
Sbjct: 303 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 362

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG +  +R VFD +  +D+V WN M+   A++  G  A+ +F+ M L  ++ +  TF+ +
Sbjct: 363 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 422

Query: 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA------TSLVDMYAKNGNIDDACRVFDG 323
           ++ C     S+L  +  G+ I  S   D LV       + +VD+Y++ G +++A +   G
Sbjct: 423 LSGC---SHSRLVEE--GVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQG 477

Query: 324 MTAKNVVS-WNTMVVG 338
           M  +   S W  ++  
Sbjct: 478 MPMEPTASAWGALLAA 493


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 310/572 (54%), Gaps = 42/572 (7%)

Query: 102 NQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNV 158
           +Q+L   +    FD +     +F+ +   N + WN +  G       V+     +++ ++
Sbjct: 10  SQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISL 69

Query: 159 RL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            L  +  TF  LL++C ++   + G+++H  +LK+GF L+ +V ++L+ +Y + G +EDA
Sbjct: 70  GLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDA 129

Query: 217 RRVFD-------------------------------EVLCRDLVLWNVMVSCYALNCLGD 245
           ++VFD                               E+  +D+V WN M+S YA      
Sbjct: 130 QKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYK 189

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +F  M    +K D  T +++V++C   GS +LGRQ+H  +    F  ++ +  +L+
Sbjct: 190 KALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALI 249

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y+K G ++ AC + +G++ K+V+SWNT++ G+      +EA+ L ++ML+    P++V
Sbjct: 250 DLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 309

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKN----GVQAFLSIENALINAYSKCGSIAGALQC 421
           T+ SIL +C  L      R +H Y  K      V    S+  +LI+ Y+KCG I  A Q 
Sbjct: 310 TMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQV 369

Query: 422 F-GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
              S     L TW ++I  +A HG +  + ++F +M  + + PD I F+ +LSACSH G+
Sbjct: 370 SDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGM 429

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           +  G   F  M  DY+I P  EHY C+ DLLG  GL  EA +++ +MP+EP      + +
Sbjct: 430 LDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLL 489

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN-CDH 599
            ACK+HG++ L +  A+KL+++EP  P +Y L+SN+YA+   W +V ++R ++ D     
Sbjct: 490 KACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKK 549

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           KVPGCS IEI   +H F+  D+ HPQ   +Y 
Sbjct: 550 KVPGCSSIEIDSVVHEFIIGDKLHPQNREIYG 581



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 207/428 (48%), Gaps = 41/428 (9%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK    ++G+Q+H H++KLG    L +   ++ +Y +        K FD       
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                              +K+FDE+ ++++V+WN +ISG    G        F+ M+  
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NV+ D  T  +++ AC Q+  IE+GR++HS+I   GFG N  + +AL+DLY KCG VE A
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETA 261

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             + + +  +D++ WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVA----TSLVDMYAKNGNIDDACRVFDGMT-AKNVVS 331
           G+  +GR IH  + K+   + V  A    TSL+DMYAK G+ID A +V D     +++ +
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN M+ GF  +G    A  +   M +    PD++T   +LS+C    +    R +     
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMR 441

Query: 392 KN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKES 449
           ++  +   L     +I+     G    A +   ++  EPD V W S++ A   HG + E 
Sbjct: 442 QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG-NLEL 500

Query: 450 IEVFEKML 457
            E F K L
Sbjct: 501 GESFAKKL 508


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 170/478 (35%), Positives = 283/478 (59%), Gaps = 2/478 (0%)

Query: 158 VRLDHIT-FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           V +D ++  + LL+ C +      GR  H+ I+++G  ++   S+ L+++Y KC  V+ A
Sbjct: 38  VHIDRVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSA 97

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R+ F+E+  + LV WN ++     N     A+ +   M+ EG   + FT SS++ +C   
Sbjct: 98  RKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFK 157

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            +     Q+H   IK + D +  V T+L+ +YAK  +I DA ++F+ M  KN V+W++M+
Sbjct: 158 CAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMM 217

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G+ QNG   EA+ + R+     F  D   ++S +S+C  L+   E +QVHA + K+G  
Sbjct: 218 AGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFG 277

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           + + + ++LI+ Y+KCG I  A   F  V E   +V W ++I  +A H  + E++ +FEK
Sbjct: 278 SNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEK 337

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M      PD + ++ VL+ACSH GL  EG +YF+LM+  +++ P   HY+C+ D+LGR G
Sbjct: 338 MQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAG 397

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
           L+ +AYDL+  MP    S   G+ + +CK++G+I  A+ AA+ L E+EP+   N+ L++N
Sbjct: 398 LVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLAN 457

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +YA+ + W +VAR RK++R+    K  G SWIEI  +IH+F   +R+HPQ   +YA L
Sbjct: 458 IYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKL 515



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 173/319 (54%), Gaps = 3/319 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L++ AK      G+  H+ I+++GL   +   N ++++Y KC   D   K F+EM V+++
Sbjct: 50  LQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSL 109

Query: 130 VTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WNT+I  +     +        +M  +    +  T +S+L  C     I    +LH+F
Sbjct: 110 VSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAF 169

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            +K     NCFV +AL+ +Y KC  ++DA ++F+ +  ++ V W+ M++ Y  N   + A
Sbjct: 170 SIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEA 229

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F   +L G   D F  SS V++C  L +   G+Q+H +  K  F  ++ V++SL+DM
Sbjct: 230 LLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDM 289

Query: 308 YAKNGNIDDACRVFDG-MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           YAK G I +A  VF G +  +++V WN M+ GF ++    EA+ L   M Q  F PD+VT
Sbjct: 290 YAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVT 349

Query: 367 LASILSSCGSLSISCETRQ 385
              +L++C  + +  E ++
Sbjct: 350 YVCVLNACSHMGLHEEGQK 368



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE-MR 125
           S A+   A    L +GKQ+H+   K G  + + + + ++ +Y KC    +   +F   + 
Sbjct: 249 SSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLE 308

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VR+IV WN +ISG             F +M       D +T+  +L AC      E G++
Sbjct: 309 VRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQK 368

Query: 184 LHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDA 216
               +++      +    S ++D+ G+ G V  A
Sbjct: 369 YFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKA 402


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/529 (34%), Positives = 296/529 (55%), Gaps = 7/529 (1%)

Query: 114 FDDMEKLFDEMRVRNIVTWNTLI---SGIINCGGNVTPY-FRRMLLDNVRLDHITFNSLL 169
           F    +L  +++  +I  W++LI   SG I     ++   +R M  + V     TF  LL
Sbjct: 52  FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLL 111

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
           +A  +  D     + H+ I+K G   + FV ++L+  Y   G  + A R+FD    +D+V
Sbjct: 112 KAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  M+  +  N     A+  F  M+  G+  +  T  S++ + G +   + GR +HGL 
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230

Query: 290 IKQS-FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           ++      DV + +SLVDMY K    DDA +VFD M ++NVV+W  ++ G+ Q+    + 
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKG 290

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + +  +ML+    P+E TL+S+LS+C  +      R+VH Y IKN ++   +    LI+ 
Sbjct: 291 MLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDL 350

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KCG +  A+  F  + E ++ TWT++I  +A HG ++++ ++F  MLS  V P+ + F
Sbjct: 351 YVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTF 410

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLSAC+HGGLV EG R F  M   +++ P ++HY C+ DL GR GLL EA  L+  MP
Sbjct: 411 MAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMP 470

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           +EP +   GA  G+C +H    L K+AA ++++L+PS    Y L++N+Y+  + W +VAR
Sbjct: 471 MEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVAR 530

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP-QAVHMYAMLCTV 636
           +RK M+D    K PG SWIE+ G++  F++ D   P ++  +Y  L TV
Sbjct: 531 VRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTV 579



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 200/413 (48%), Gaps = 35/413 (8%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
            +R +G I  S H+         K+     F     Q H+HI+K GL +   ++N ++  
Sbjct: 94  HMRRNGVI-PSRHTFPPLLKAVFKLRDSNPF-----QFHAHIVKFGLDSDPFVRNSLISG 147

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y     FD   +LFD    +++VTW  +I G +  G       YF  M    V  + +T 
Sbjct: 148 YSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTV 207

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            S+L+A  + +D+  GR +H   L+ G    + F+ S+LVD+YGKC   +DA++VFDE+ 
Sbjct: 208 VSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP 267

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R++V W  +++ Y  +   D  + VF  M    +  +  T SS++++C  +G+   GR+
Sbjct: 268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRR 327

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H  +IK S +++    T+L+D+Y K G +++A  VF+ +  KNV +W  M+ GF  +G 
Sbjct: 328 VHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGY 387

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            R+A  L   ML     P+EVT  ++LS+C            H   ++ G + FLS++  
Sbjct: 388 ARDAFDLFYTMLSSHVSPNEVTFMAVLSACA-----------HGGLVEEGRRLFLSMKGR 436

Query: 405 LINAYSKCGSIAGALQCFGS--------------VKEPDLVTWTSIIGAYAFH 443
             N   K    A  +  FG                 EP  V W ++ G+   H
Sbjct: 437 F-NMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLH 488


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 201/655 (30%), Positives = 333/655 (50%), Gaps = 70/655 (10%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H      LK   +    + G   H  I   G  + + + N ++ +Y +C + ++   +FD
Sbjct: 117 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 176

Query: 123 EMRVR---NIVTWNTLISGIINCGGNVTPY--FRRMLL------DNVRLDHITFNSLLRA 171
           E+  R   ++++WN+++S  +      T    F +M L       N R D I+  ++L A
Sbjct: 177 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 236

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C     +   + +H   ++ G  L+ FV +AL+D Y KCG +E+A +VF+ +  +D+V W
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 296

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS------------------------ 267
           N MV+ Y+ +     A  +F  MR E +  D  T++                        
Sbjct: 297 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF 356

Query: 268 -----------SLVNSCGTLGSSKLGRQIHGLVIKQSF----------DLDVLVATSLVD 306
                      S++++C +LG+   G +IH   +K             D D++V  +L+D
Sbjct: 357 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 416

Query: 307 MYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF--CP 362
           MY+K  +   A  +FD   +  +NVV+W  M+ G  Q GD  +A+KL  +M+   +   P
Sbjct: 417 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 476

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKN---GVQAFLSIENALINAYSKCGSIAGAL 419
           +  T++ IL +C  L+     +Q+HAY +++      A+  + N LIN YSKCG +  A 
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYF-VANCLINMYSKCGDVDTAR 535

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F S+ +   ++WTS++  Y  HG   E++++F+KM      PD I FL VL ACSH G
Sbjct: 536 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 595

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           +V +GL YF+ M +DY + P +EHY    DLL R G L +A+  +  MP+EP +    A 
Sbjct: 596 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 655

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC+VH ++ LA+ A  KL+E+      +Y L+SN+YA+   W DVAR+R +M+ +   
Sbjct: 656 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 715

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV------FGLMEENNVSGH 648
           K PGCSW++      +F   DRSHP +  +YA+L ++       G + E N + H
Sbjct: 716 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 770



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 241/494 (48%), Gaps = 69/494 (13%)

Query: 99  SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI-----SGIINCGGNVTPYFRRM 153
           SL   V+  Y+ C A D    + + +     V WN LI      G ++   NV+    RM
Sbjct: 52  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC---RM 108

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           L    RLDH T   +L+AC +      G   H  I   GF  N F+ +ALV +Y +CG +
Sbjct: 109 LRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 168

Query: 214 EDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRL------EGMKGDYF 264
           E+A  +FDE+  R   D++ WN +VS +  +     A+ +F+ M L         + D  
Sbjct: 169 EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 228

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           +  +++ +CG+L +    +++HG  I+    LDV V  +L+D YAK G +++A +VF+ M
Sbjct: 229 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 288

Query: 325 TAKNVVSWNTMVVGFGQNGDGR-----------------------------------EAV 349
             K+VVSWN MV G+ Q+G+ +                                   EA+
Sbjct: 289 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 348

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN----------GVQAFL 399
            + R M+     P+ VT+ S+LS+C SL    +  ++HAY++KN          G    L
Sbjct: 349 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 408

Query: 400 SIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            + NALI+ YSKC S   A   F  +  +E ++VTWT +IG +A +G S +++++F +M+
Sbjct: 409 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 468

Query: 458 S--HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLGR 513
           S  + V P++     +L AC+H   +  G +  +  +  +H    S ++   CL ++  +
Sbjct: 469 SEPYGVAPNAYTISCILMACAHLAAIRIG-KQIHAYVLRHHQYDSSAYFVANCLINMYSK 527

Query: 514 VGLLVEAYDLLASM 527
            G +  A  +  SM
Sbjct: 528 CGDVDTARHVFDSM 541


>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 315/574 (54%), Gaps = 10/574 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L+ S+       G  LH+   KLGL N + LQ  +L++Y  C      E +F +M 
Sbjct: 119 FTSLLQASSLLEHWWFGSSLHAKGFKLGL-NDICLQTSLLNMYSNCGDLSSAELVFWDMV 177

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R+ V WN+LI G +  N        F +M+         T+  +L +C +  D   GR 
Sbjct: 178 DRDHVAWNSLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRL 237

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++     L+  + +ALVD+Y   G ++ A R+F  +   DLV WN M++ Y+ N  
Sbjct: 238 IHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENED 297

Query: 244 GDGAIAVFNLMRLEGM---KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           G+ A+ +F  ++L+ M   K D +T++ ++++ G   SS  G+ +H  VIK  F+  V V
Sbjct: 298 GEKAMNLF--VQLQEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFV 355

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            ++LV MY KN   D A RVF  ++ K+VV W  M+ G+ +  DG  A++    M+    
Sbjct: 356 GSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGH 415

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
             D+  L+ ++++C +L++  +   +H YA+K G    +S+  +LI+ Y+K GS+  A  
Sbjct: 416 EVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYL 475

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  V EPDL  W S++G Y+ HG+ +E+++VFE++L   + PD + FL +LSACSH  L
Sbjct: 476 VFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSRL 535

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-IEPRSDTLGAF 539
           V +G   +N M S   ++P  +HY+C+  L  R  LL EA +++   P IE   +     
Sbjct: 536 VEQGKFLWNYMNS-IGLIPGLKHYSCMVTLFSRAALLEEAEEIINKSPYIEDNLELWRTL 594

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC ++ +  +   AAE++L L+        L+SN+YA+ R W  VA +R+ MR     
Sbjct: 595 LSACVINKNFKVGIHAAEEVLRLKAEDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLD 654

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K PG SWIE   +IH F S D+SHP+A  ++A L
Sbjct: 655 KYPGLSWIEAKNDIHVFSSGDQSHPKADEVHAEL 688



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 244/510 (47%), Gaps = 21/510 (4%)

Query: 79  LQQGKQLHSHIMKLGLC---NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           L++ +QLH+ I+            + N +L +Y +C +  D   +FD+M  R IV++N L
Sbjct: 26  LREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKMPRRTIVSYNAL 85

Query: 136 ISGIINCGGN----VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++       N        + +M+ + +R    TF SLL+A    +    G  LH+   K+
Sbjct: 86  LAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWFGSSLHAKGFKL 145

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G    C  +S L+++Y  CG +  A  VF +++ RD V WN ++  Y  N   +  I +F
Sbjct: 146 GLNDICLQTS-LLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLF 204

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M   G     FT+  ++NSC  L   + GR IH  VI ++  LD+ +  +LVDMY   
Sbjct: 205 IKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNA 264

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASI 370
           GN+  A R+F  M   ++VSWN+M+ G+ +N DG +A+ L   + +  F  PD+ T A I
Sbjct: 265 GNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGI 324

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           +S+ G    S   + +HA  IK G +  + + + L++ Y K      A + F S+   D+
Sbjct: 325 ISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDV 384

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V WT +I  Y+       +I  F +M+      D      V++AC++  ++ +G      
Sbjct: 385 VLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQG-----E 439

Query: 491 MISDYHIL--PDSEHYT--CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +I  Y +    D E      L D+  + G L  AY L+ S   EP      + +G    H
Sbjct: 440 IIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAY-LVFSQVSEPDLKCWNSMLGGYSHH 498

Query: 547 GSIGLAKWAAEKLLE--LEPSKPVNYALVS 574
           G +  A    E++L+  L P +    +L+S
Sbjct: 499 GMVEEALQVFEEILKQGLIPDQVTFLSLLS 528



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 161/314 (51%), Gaps = 7/314 (2%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNC---FVSSALVDLYGKCGFVEDARRVFDEV 223
           SLL+ C     +   R+LH+ IL           FV + ++ +Y +CG + D+  VFD++
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKM 74

Query: 224 LCRDLVLWNVMVSCYALNCLGDG--AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
             R +V +N +++ Y+         A+ ++  M   G++    TF+SL+ +   L     
Sbjct: 75  PRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWF 134

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G  +H    K   + D+ + TSL++MY+  G++  A  VF  M  ++ V+WN++++G+ +
Sbjct: 135 GSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYLK 193

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           N    E + L   M+   F P + T   +L+SC  L      R +HA+ I   V   L +
Sbjct: 194 NNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHL 253

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           +NAL++ Y   G++  A + F  ++ PDLV+W S+I  Y+ +   ++++ +F ++     
Sbjct: 254 QNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCF 313

Query: 462 -RPDSIAFLEVLSA 474
            +PD   +  ++SA
Sbjct: 314 PKPDDYTYAGIISA 327



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 9/214 (4%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +HE         S  +   A    L+QG+ +H + +KLG   ++S+   ++ +Y K  + 
Sbjct: 411 VHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSL 470

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           +    +F ++   ++  WN+++ G  + G        F  +L   +  D +TF SLL AC
Sbjct: 471 EAAYLVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSAC 530

Query: 173 VQADDIEVGRRLHSFILKVGF--GLNCFVSSALVDLYGKCGFVEDARRVFDE--VLCRDL 228
             +  +E G+ L +++  +G   GL  +  S +V L+ +   +E+A  + ++   +  +L
Sbjct: 531 SHSRLVEQGKFLWNYMNSIGLIPGLKHY--SCMVTLFSRAALLEEAEEIINKSPYIEDNL 588

Query: 229 VLWNVMVSCYALN-CLGDGAIAVFNLMRLEGMKG 261
            LW  ++S   +N     G  A   ++RL+   G
Sbjct: 589 ELWRTLLSACVINKNFKVGIHAAEEVLRLKAEDG 622



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 11/130 (8%)

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS----IENALINAYS 410
           M +  FC  E    S+L  C +++   E RQ+HA  I     AF S    + N +++ Y+
Sbjct: 1   MNKACFCVAEGHALSLLQKCSTVTSLREARQLHAL-ILTTTTAFTSQSPFVYNNILSMYA 59

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF----HGLSKESIEVFEKMLSHAVRPDSI 466
           +CGS+  +   F  +    +V++ +++ AY+     H +S  ++E++ +M+++ +RP S 
Sbjct: 60  RCGSLTDSHLVFDKMPRRTIVSYNALLAAYSRASPNHAIS--ALELYTQMVTNGLRPSST 117

Query: 467 AFLEVLSACS 476
            F  +L A S
Sbjct: 118 TFTSLLQASS 127


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/594 (32%), Positives = 322/594 (54%), Gaps = 40/594 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G QLH+ ++K+G  N   + N ++ +Y KC   D + +LFDEM  R+I +WNT+IS 
Sbjct: 187 LELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISS 246

Query: 139 IIN--CGGNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           ++           FR M  +D  R+DH T +++L A      + VGR +H+ ++K+GF  
Sbjct: 247 VVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFES 305

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM- 254
           N  V +AL+  Y KCG ++    +F+++  RD++ W  M++ Y    L D A+ VF+ M 
Sbjct: 306 NISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMP 365

Query: 255 ----------------------------RL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
                                       R+  EG++   FT + ++N+CG L  +K+ +Q
Sbjct: 366 ARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQ 425

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV--VSWNTMVVGFGQN 342
           IHG ++K  F  +  +  +L+DM  + G + DA ++F   +      + W +M+ G+ +N
Sbjct: 426 IHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARN 485

Query: 343 GDGREAVKLL-RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
               EA+ L  +  L+G+   D+V   ++L  CG+L+     +Q+H +A+K+G  + L +
Sbjct: 486 AQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGV 545

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            N++I  YSKC ++  A++ F  +   D+V+W  +I  +  H    E++ V+ KM    +
Sbjct: 546 GNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGI 605

Query: 462 RPDSIAFLEVLSACSH--GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
           +PD++ F+ ++SA  H    LV    R F  M + YHI P  EHYT L  +LG  GLL E
Sbjct: 606 KPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEE 665

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A +++  MPIEP +    A + AC++H +  + K AA+ LL ++P  P  Y LVSN+Y++
Sbjct: 666 AEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSA 725

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              W     +R+ MR     K PG SWI    ++H+F + D+SHPQA  +++ L
Sbjct: 726 YGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGL 779



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 245/471 (52%), Gaps = 46/471 (9%)

Query: 45  LSSQ---LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ 101
           LS+Q   L N  ++   T + H +    L +S ++  ++  K +H+ I KL     + L 
Sbjct: 54  LSNQPALLSNFPSVSNDTVNDHYYL---LDLSVRYDDVELIKAVHASIFKLA--EDIHLA 108

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVR 159
           N ++  Y+K     +  K+F  +   N+V++  +ISG    N        F RM    + 
Sbjct: 109 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 168

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L+  +F ++L  C++  D+E+G +LH+ ++K+GF    FVS+AL+ LYGKCG+++   ++
Sbjct: 169 LNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQL 228

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           FDE+  RD+  WN ++S      + + A  +F ++ R++G + D+FT S+++ +   L +
Sbjct: 229 FDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGL-A 287

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI------------------------ 314
           S +GR+IH  VIK  F+ ++ V  +L+  Y K G+I                        
Sbjct: 288 SMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITA 347

Query: 315 -------DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
                  D A  VFD M A+N +S+N ++ GF QNG+G +A+     M++      + TL
Sbjct: 348 YMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTL 407

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA--LQCFGSV 425
             +L++CG L  +  ++Q+H + +K G  +   IE AL++  ++CG +A A  +   GS 
Sbjct: 408 TGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSF 467

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVF-EKMLSHAVRPDSIAFLEVLSAC 475
            +   + WTS+I  YA +   +E+I +F +  L  A+  D +A   VL  C
Sbjct: 468 SQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVC 518



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 199/354 (56%), Gaps = 12/354 (3%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL   V+ DD+E+ + +H+ I K+   ++  +++AL+  Y K G V +A +VF  + C +
Sbjct: 78  LLDLSVRYDDVELIKAVHASIFKLAEDIH--LANALIVAYLKLGMVPNAYKVFVGLSCPN 135

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           +V +  M+S +A +     A+ +F  MR  G++ + F+F +++  C  L   +LG Q+H 
Sbjct: 136 VVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHA 195

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           +VIK  F     V+ +L+ +Y K G +D   ++FD M  +++ SWNT++    +      
Sbjct: 196 IVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYER 255

Query: 348 AVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           A +L RDM +   F  D  TL++IL +   L+ S   R++HA+ IK G ++ +S+ NALI
Sbjct: 256 AFELFRDMRRIDGFRIDHFTLSTILVAARGLA-SMVGREIHAHVIKIGFESNISVINALI 314

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
             Y+KCGSI   +  F  ++  D++TWT +I AY   GL+  ++EVF+KM +     +SI
Sbjct: 315 RFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPAR----NSI 370

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++  +LS     G  S+ L +F  M+ +   L D      LT +L   GLL+EA
Sbjct: 371 SYNAILSGFCQNGEGSKALAFFCRMVEEGVELTD----FTLTGVLNACGLLMEA 420



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 18/260 (6%)

Query: 36  NAQKHDRSVL--SSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           NAQ  +   L   SQL  +  + +   +A       L V     F + GKQ+H H +K G
Sbjct: 485 NAQPEEAISLFCQSQLEGAMVVDKVASTA------VLGVCGTLAFHEMGKQIHCHALKSG 538

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFR 151
             + L + N ++ +Y KC   DD  K+F+ M   +IV+WN LI+G  +   G      + 
Sbjct: 539 FLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWS 598

Query: 152 RMLLDNVRLDHITFNSLLRACVQADD--IEVGRRLHSFILKVGFGLNCFVS--SALVDLY 207
           +M    ++ D +TF  ++ A    +   ++  RRL    +K  + ++  V   ++LV + 
Sbjct: 599 KMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLF-LSMKTIYHIDPTVEHYTSLVGVL 657

Query: 208 GKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGM-KGDYF 264
           G  G +E+A  + +++ +  +  +W  ++ +C   +    G  A  +L+ ++ +    Y 
Sbjct: 658 GYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYI 717

Query: 265 TFSSLVNSCGTLGSSKLGRQ 284
             S+L ++ G    S + R+
Sbjct: 718 LVSNLYSAYGRWHCSDMVRE 737


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 290/548 (52%), Gaps = 35/548 (6%)

Query: 128 NIVTWNTLISGIINCG--GNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           N+  WNT+I   +  G      P  Y+ + L   +R +  TF  LL+A V   +++ G  
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ +++ GF  + FVS AL+  Y  CG V   R+VFDE+    LVLW +++  Y     
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F  MR  G+  D    S++V++CG LG   + + +H  + K   ++D  V+++
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 304 LVDMYAKNGNIDDACR-------------------------------VFDGMTAKNVVSW 332
           L+  Y + G++D A R                               +F  M  ++VVSW
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N+M+ GF + G  +EA+    +M      P+ +TL S LS+C S         +HAY  K
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDK 352

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           N +    S++++LI+ YSKCG I  A+Q F      DL TWTSI+   A HG  ++++  
Sbjct: 353 NDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           F KM    V+PD +  + VLSAC+H GL+ +G  YF  M   + ++P  EHY C+ DLLG
Sbjct: 413 FSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLG 472

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572
           R+G L EAYDL+  MP+E      GAF+ AC+VH ++ L + AA +LL L+P  P    +
Sbjct: 473 RMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVM 532

Query: 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           +SN+YA E  W     LRK ++     K PGCS IE+ G +H F+  D SHP    + +M
Sbjct: 533 LSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINSM 592

Query: 633 LCTVFGLM 640
           +  +  LM
Sbjct: 593 VEKIEKLM 600



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 178/389 (45%), Gaps = 47/389 (12%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G+++H+ +++ G      +   +L  YV C       ++FDEMR   +V W  +I  
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166

Query: 139 I--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
              +         FR M    +  D +  ++++ AC    D+ V + +H FI K G  ++
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV--------------------- 235
            FVSS L+  YG+CG ++ A R F E   +++V+WN M+                     
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286

Query: 236 -SCYALNCLGDG---------AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
               + N +  G         A+  F+ M   G+  +  T  S +++C + G+   G  I
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H  V K   + D  + +SL+DMY+K G+ID A ++F+  T +++ +W ++V G   +G G
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRG 406

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN-- 403
            +A+     M +    PD+VT+  +LS+C            HA  +  G   F S+E   
Sbjct: 407 EKALHYFSKMKEAQVQPDDVTMVGVLSACA-----------HAGLLDQGWWYFQSMEKVF 455

Query: 404 ALINAYSKCGSIAGALQCFGSVKEP-DLV 431
            L+      G +   L   G +KE  DL+
Sbjct: 456 GLVPKVEHYGCMVDLLGRMGCLKEAYDLI 484



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 16/245 (6%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N ++H  V+    +  ++LF  M  R++V+WN++I G    G       +F  M    V 
Sbjct: 262 NTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVS 321

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            + +T  S L AC     ++ G  +H+++ K     +  + S+L+D+Y KCG ++ A ++
Sbjct: 322 PNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQI 381

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+E   RDL  W  +V   A++  G+ A+  F+ M+   ++ D  T   ++++C   G  
Sbjct: 382 FEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLL 441

Query: 280 KLG-------RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVS 331
             G        ++ GLV K      V     +VD+  + G + +A  +  GM  + N + 
Sbjct: 442 DQGWWYFQSMEKVFGLVPK------VEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEII 495

Query: 332 WNTMV 336
           W   +
Sbjct: 496 WGAFL 500



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 13/197 (6%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L  G  +H+++ K  +    SL + ++ +Y KC   D   ++F+E   R++
Sbjct: 331 LSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDL 390

Query: 130 VTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
            TW +++ G+     G     YF +M    V+ D +T   +L AC  A  ++ G      
Sbjct: 391 FTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQS 450

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDL----VLWNVMVS-CYAL 240
           + KV FGL   V     +VDL G+ G +++A   +D ++   +    ++W   +S C   
Sbjct: 451 MEKV-FGLVPKVEHYGCMVDLLGRMGCLKEA---YDLIMGMPMEANEIIWGAFLSACRVH 506

Query: 241 NCLGDGAIAVFNLMRLE 257
           N +  G +A   L+ L+
Sbjct: 507 NNVELGEVAARRLLGLD 523


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 311/576 (53%), Gaps = 5/576 (0%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L  G+Q+H   +K G+   L + N +L +Y K  A D  + LF  + V++ V+WN LI G
Sbjct: 441  LDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVG 500

Query: 139  IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            + +    G      +RM    + LD ++F + + AC     IE G+++HS  +K     N
Sbjct: 501  LAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSN 560

Query: 197  CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
              V S+L+DLY K G VE +R+V   V    +V  N +++    N   D AI +F  +  
Sbjct: 561  HAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLK 620

Query: 257  EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGNID 315
            +G K   FTF+S+++ C    SS +G+Q+H   +K +  + D  +  SLV +Y K   ++
Sbjct: 621  DGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLE 680

Query: 316  DACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DA ++ + +   KN+V W   + G+ QNG   +++ +   M       DE T  S+L +C
Sbjct: 681  DANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKAC 740

Query: 375  GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTW 433
              ++   + +++H   +K+G  ++ +  +AL++ YSKCG +  + + F  +K   +++ W
Sbjct: 741  SEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPW 800

Query: 434  TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
             S+I  +A +G + E++ +F+KM    ++PD +  L VL ACSH GL+SEGL +F+ M  
Sbjct: 801  NSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQ 860

Query: 494  DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
             Y I+P  +HY CL DLLGR G L +A +++  +P          ++ AC++H      K
Sbjct: 861  VYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGK 920

Query: 554  WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
             AA+KL+E+EP     Y  +S+++A+   W +    R+ MR+    K PGCSWI +  + 
Sbjct: 921  VAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKQ 980

Query: 614  HTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHC 649
              FV  D  HP A+ +Y ML  + G+M ++     C
Sbjct: 981  SVFVVQDTHHPDALSIYKMLDDLTGMMNKDGRIKEC 1016



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 246/468 (52%), Gaps = 5/468 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S ++  L  +A      +G+Q+H+  +K GL   + + + ++++YVK     D +K+FD 
Sbjct: 325 STFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 384

Query: 124 MRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
              +NIV WN ++ G +           F+ M   ++  D  TF S+L AC+    +++G
Sbjct: 385 STEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLG 444

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R++H   +K G   + FV++A++D+Y K G ++ A+ +F  +  +D V WN ++   A N
Sbjct: 445 RQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHN 504

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                AI +   M+  G+  D  +F++ +N+C  + + + G+QIH   IK +   +  V 
Sbjct: 505 EEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVG 564

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           +SL+D+Y+K G+++ + +V   + A ++V  N ++ G  QN    EA++L + +L+  F 
Sbjct: 565 SSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFK 624

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGV-QAFLSIENALINAYSKCGSIAGALQ 420
           P   T  SILS C     S   +QVH Y +K+ +     S+  +L+  Y KC  +  A +
Sbjct: 625 PSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANK 684

Query: 421 CFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
               V +  +LV WT+ I  YA +G S +S+ +F +M S+ VR D   F  VL ACS   
Sbjct: 685 LLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMA 744

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            +++G     L++    +  ++   + L D+  + G ++ ++++   +
Sbjct: 745 ALTDGKEIHGLIVKSGFVSYETA-TSALMDMYSKCGDVISSFEIFKEL 791



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 207/404 (51%), Gaps = 2/404 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G  QQ   L S + K+G          ++          D   L   +R+ + V WN 
Sbjct: 235 RVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNA 294

Query: 135 LISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +I+     G    V   ++ M    +     TF S+L A       + GR++H+  +K G
Sbjct: 295 VIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHG 354

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV S+L++LY K G + DA++VFD    +++V+WN ++  +  N L +  I +F 
Sbjct: 355 LDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQ 414

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR   ++ D FTF S++ +C  L S  LGRQ+H + IK   D D+ VA +++DMY+K G
Sbjct: 415 YMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLG 474

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            ID A  +F  +  K+ VSWN ++VG   N +  EA+ +L+ M       DEV+ A+ ++
Sbjct: 475 AIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAIN 534

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C ++      +Q+H+ +IK  V +  ++ ++LI+ YSK G +  + +    V    +V 
Sbjct: 535 ACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVP 594

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             ++I     +    E+IE+F+++L    +P +  F  +LS C+
Sbjct: 595 INALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 217/458 (47%), Gaps = 38/458 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G L+ G+Q+H  ++K G C+ +  Q  ++ +Y KC   DD  ++FD +   + 
Sbjct: 164 LSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDT 223

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + W ++I+G    G        F RM       D +T       CV              
Sbjct: 224 ICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVT-------CV-------------- 262

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
                          ++      G + DAR +   +     V WN +++ Y+ + L    
Sbjct: 263 --------------TIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEV 308

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             ++  M+ +G+     TF+S++++   + +   GRQIH   +K   D +V V +SL+++
Sbjct: 309 FGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINL 368

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K+G I DA +VFD  T KN+V WN ++ GF QN    E +++ + M +     D+ T 
Sbjct: 369 YVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTF 428

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S+L +C +L      RQVH   IKNG+ A L + NA+++ YSK G+I  A   F  +  
Sbjct: 429 VSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPV 488

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D V+W ++I   A +    E+I + ++M  + +  D ++F   ++ACS+   +  G + 
Sbjct: 489 KDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQI 548

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
            +  I  Y++  +    + L DL  + G +  +  +LA
Sbjct: 549 HSASIK-YNVCSNHAVGSSLIDLYSKFGDVESSRKVLA 585



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 150/346 (43%), Gaps = 48/346 (13%)

Query: 147 TPYFRRMLLD---NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
           T Y+  +L       R  H  F++ L    QA    V   LH+ IL++G  L   +  AL
Sbjct: 38  TTYYTTLLASLSRECRHAHHPFDAGLHRTHQARACGV---LHARILRLGLPLRGRLGDAL 94

Query: 204 VDLYGKCGFVEDARRVFDEVLCRD----LVLWNVMVSCYALNCLGDGAIAVFNLMRLE-G 258
           VDLYG+ G V  A R      C          + ++SC+A +      +  F  +R   G
Sbjct: 95  VDLYGRSGRVGYAWRAL--ACCTGAPASSAAASSVLSCHARSGSPRDVLDAFQRIRCSIG 152

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
              D F  + ++++C  LG+ + GRQ+H  V+K  F   V     LVDMYAK G +DDA 
Sbjct: 153 STPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDAR 212

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           R+FDG+   + + W +M+ G+ + G  ++A+ L   M +    PD+VT  +I+S+  S+ 
Sbjct: 213 RMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASM- 271

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
                                             G +  A      ++    V W ++I 
Sbjct: 272 ----------------------------------GRLGDARTLLKRIRMTSTVAWNAVIA 297

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +Y+  GL  E   +++ M    + P    F  +LSA ++     EG
Sbjct: 298 SYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEG 343



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 9/232 (3%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S  + ++  LK  ++   L  GK++H  I+K G  +  +  + ++ +Y KC       ++
Sbjct: 728 SDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEI 787

Query: 121 FDEMRVR-NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           F E++ R NI+ WN++I G    G        F++M    ++ D +T   +L AC  A  
Sbjct: 788 FKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGL 847

Query: 178 IEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLW-NV 233
           I  G      + +V +G+   V   + L+DL G+ G ++ A+ V D++  R D V+W   
Sbjct: 848 ISEGLHFFDSMSQV-YGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATY 906

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF-SSLVNSCGTLGSSKLGRQ 284
           + +C        G +A   L+ +E      + F SSL  + G    +K+ R+
Sbjct: 907 LAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVARE 958


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 311/599 (51%), Gaps = 47/599 (7%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            ++Q L + AKFG L+  + L   ++K  + +     N +L  Y K  +  +++  FD M
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFS----WNALLSAYAKSGSIQNLKATFDRM 115

Query: 125 RVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             R+ V++NT I+G     GN  P      F+RM  +       T  S+L A  Q  D+ 
Sbjct: 116 PFRDSVSYNTTIAGF---SGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLR 172

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G+++H  I+   F  N F+ +AL D+Y KCG +E AR +FD +  ++LV WN+M+S YA
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   +  I + + MRL G   D  T S+++ +                           
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA--------------------------- 265

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
                   Y + G +D+A RVF     K++V W  M+VG+ +NG   +A+ L  +ML   
Sbjct: 266 --------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEH 317

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  TL+S++SSC  L+     + VH  +I  G+   L + +ALI+ YSKCG I  A 
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDAR 377

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   ++V+W ++I   A +G  K+++E+FE ML    +PD++ F+ +LSAC H  
Sbjct: 378 SVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCN 437

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            + +G  YF+ + + + + P  +HY C+ +LLGR G + +A  L+ +M  +P        
Sbjct: 438 WIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTL 497

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  C   G I  A+ AA  L EL+P+  V Y ++SN+YAS   W DVA +R +M+     
Sbjct: 498 LSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVK 557

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           K  G SWIEI  E+H F S DR+HP++  +Y  L  + G ++E   + + N++  ++ E
Sbjct: 558 KFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGE 616


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 316/577 (54%), Gaps = 4/577 (0%)

Query: 85  LHSHIMKLGLC-NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           LH   +KLGL  + + + N +L  Y K        ++F EM  R+ VT+N ++ G    G
Sbjct: 161 LHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEG 220

Query: 144 GNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            +      F  M    +     TF+++L       D+ +GR++H  + +     N FV++
Sbjct: 221 SHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSS-NVFVNN 279

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +L+D Y KC  +++ +++F E++ RD V +NVM++ YA N      + +F  M+      
Sbjct: 280 SLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDR 339

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
               ++SL++  G++    +G+QIH  ++      + LV  +L+DMY+K G +D A   F
Sbjct: 340 QALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNF 399

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
                K  VSW  M+ G  QNG   EA++L   M +    PD  T +S + +  +L++  
Sbjct: 400 INKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIG 459

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
             RQ+H+Y I++G  + +   +AL++ Y+KCG +  ALQ F  + E + ++W ++I AYA
Sbjct: 460 LGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYA 519

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501
            +G +K +I++FE ML +  +PDS+ FL VLSACSH GL  E ++YF LM  +Y I P  
Sbjct: 520 HYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWK 579

Query: 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
           EHY+C+ D LGRVG   +  ++L  MP E       + + +C+ HG+  LA+ AAEKL  
Sbjct: 580 EHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFS 639

Query: 562 LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDR 621
           +  +    Y ++SN++A    W D A ++K+MRD    K  G SW+E+  ++++F S+D+
Sbjct: 640 MGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQ 699

Query: 622 SHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           ++P    +   L  ++  M++       +   +++D+
Sbjct: 700 TNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDD 736



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 2/214 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L V+     +  GKQ+H+ ++ LGL ++  + N ++ +Y KC   D  +  F    
Sbjct: 344 YASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKN 403

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +  V+W  +I+G +  G        F  M    +  D  TF+S ++A      I +GR+
Sbjct: 404 DKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQ 463

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LHS++++ G   + F  SAL+D+Y KCG +++A + FDE+  R+ + WN ++S YA    
Sbjct: 464 LHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQ 523

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
              AI +F  M   G K D  TF S++++C   G
Sbjct: 524 AKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNG 557



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 152/335 (45%), Gaps = 12/335 (3%)

Query: 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
           TP   RM+           N LL + + +  +   R L     ++    N F  + ++  
Sbjct: 19  TPLDARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFD---QMPHRNNAFSLNRMLSG 75

Query: 207 YGKCGFVEDARRVF--DEVLCRDLVLWNVMVSCY--ALNCLGDGAIAVFNLMRLEGMKGD 262
           Y + G +  A  +F       RD V W VM+  +  A       A+++F  M  EG+  D
Sbjct: 76  YSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPD 135

Query: 263 YFTFSSLVN---SCGTLGSSKLGRQIHGLVIKQS-FDLDVLVATSLVDMYAKNGNIDDAC 318
             T ++++N   + G   ++ +   +H   +K      +V+V  +L+D Y K+G +  A 
Sbjct: 136 RVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAAR 195

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           RVF  M  ++ V++N M++G  + G   EA+ L   M +        T +++L+    + 
Sbjct: 196 RVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVG 255

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
             C  RQVH   +     + + + N+L++ YSKC  +    + F  + E D V++  +I 
Sbjct: 256 DLCLGRQVHGL-VARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIA 314

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            YA++  +   + +F +M S +    ++ +  +LS
Sbjct: 315 GYAWNRCASIVLRLFREMQSLSFDRQALPYASLLS 349



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 141/342 (41%), Gaps = 59/342 (17%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T  + N Q+ +   L   +R +G   +      + +S  +K S+    +  G+QLHS+++
Sbjct: 415 TGCVQNGQQEEALQLFCGMRRAGLSPD-----RATFSSTIKASSNLAMIGLGRQLHSYLI 469

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + G  + +   + +L +Y KC   D+  + FDEM  RN ++WN +IS   + G   N   
Sbjct: 470 RSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIK 529

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDL 206
            F  ML    + D +TF S+L AC      E   +    +++  +G++ +    S ++D 
Sbjct: 530 MFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFE-LMEYEYGISPWKEHYSCVIDT 588

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
            G+ G  +  + +  E+   D                                  D   +
Sbjct: 589 LGRVGRFDKVQEMLGEMPFED----------------------------------DPIIW 614

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV---DMYAKNGNIDDACRVFD- 322
           SS+++SC T G+  L R    +  ++ F +    AT  V   +++AK G  +DA  V   
Sbjct: 615 SSILHSCRTHGNQDLAR----VAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKI 670

Query: 323 ----GMTAKNVVSW---NTMVVGFGQNGDGREAVKLLRDMLQ 357
               G+  +   SW      V  F  N      +  ++D L+
Sbjct: 671 MRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELE 712



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 8/180 (4%)

Query: 308 YAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGR--EAVKLLRDMLQGSFCPD 363
           Y+++G +  A  +F       ++ V+W  M+  F      R  +AV L RDML+    PD
Sbjct: 76  YSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPD 135

Query: 364 EVTLASILS---SCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGAL 419
            VT+A++L+   + G  + +     +H +A+K G + + + + N L++AY K G +A A 
Sbjct: 136 RVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAAR 195

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F  +   D VT+ +++   +  G   E++++F  M    +      F  VL+  +  G
Sbjct: 196 RVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVG 255


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 301/521 (57%), Gaps = 4/521 (0%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL-DHITFNSLLRACVQAD 176
           +F   R  +++TWN+++   +N          +  ML  +  + D  TF SLL+ C    
Sbjct: 34  VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           + +VG+ LH  ++K     + ++ + L+++Y  CG ++ AR +F+ +  R+ V+W  M+S
Sbjct: 94  EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y  N   + A+ ++  M  +G   D  T ++LV++C  L    +G ++H  + +    +
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
             ++ ++LV+MYAK G++  A +VFD ++ K+V +W+ ++ G+ +N    EA++L R++ 
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVA 273

Query: 357 QGS-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
            GS   P+EVT+ +++S+C  L      R VH Y  +      +S+ N+LI+ +SKCG I
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDI 333

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + F S+   DL++W S++  +A HGL +E++  F  M +  ++PD I F+ VL+AC
Sbjct: 334 DAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTAC 393

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SH GLV EG + F  + + Y +   SEHY C+ DLL R GLL EA + +  MP++P    
Sbjct: 394 SHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI 453

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
            G+ +GAC+V+ ++ L + AA  LL+LEP+    Y L+SN+YA  + W +V ++R++M +
Sbjct: 454 WGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNE 513

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
               K PGCS + I    H+F++ D SHP+   +  ML  V
Sbjct: 514 KGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQV 554



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 194/374 (51%), Gaps = 27/374 (7%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           GK LH  ++K  L + L ++  +L++Y  C        LF+ M  RN V W ++ISG + 
Sbjct: 98  GKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMK 157

Query: 141 -NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            +C       +++M  D    D +T  +L+ AC +  D+ VG +LHS I ++   +   +
Sbjct: 158 NHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVL 217

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEG 258
            SALV++Y KCG ++ AR+VFD++  +D+  W+ ++  Y  N     A+ +F  +     
Sbjct: 218 GSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSN 277

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           M+ +  T  +++++C  LG  + GR +H  + +      V +  SL+DM++K G+ID A 
Sbjct: 278 MRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAK 337

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           R+FD M+ K+++SWN+MV GF  +G GREA+   R M      PDE+T   +L++C    
Sbjct: 338 RIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACS--- 394

Query: 379 ISCETRQVHAYAIKNGVQAFLSIE------------NALINAYSKCGSIAGALQCFGSVK 426
                   HA  ++ G + F  IE              +++   + G +A A +    + 
Sbjct: 395 --------HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446

Query: 427 -EPDLVTWTSIIGA 439
            +PD   W S++GA
Sbjct: 447 LQPDGAIWGSMLGA 460



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G L+ G+ +H +I +    + +SL N ++ ++ KC   D  +++FD M  +++++WN
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWN 352

Query: 134 TLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++++G      G      FR M   +++ D ITF  +L AC  A  ++ G++L   I  +
Sbjct: 353 SMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEAL 412

Query: 192 -GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLGDGAI 248
            G  L       +VDL  + G + +AR     + L  D  +W  M+ +C   N L  G  
Sbjct: 413 YGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEE 472

Query: 249 AVFNLMRLEGMK-GDYFTFSSL 269
           A   L++LE    G Y   S++
Sbjct: 473 AARFLLKLEPTNDGVYILLSNI 494



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF-CPDEVTLASILSSCG 375
           A  VF      +V++WN+M+  F  +   R A++   +ML+ S   PD  T  S+L  C 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L      + +H   +K  + + L IE  L+N Y+ CG +  A   F  +   + V WTS
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +I  Y  +    E++ +++KM      PD +    ++SAC+
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 301/559 (53%), Gaps = 46/559 (8%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---LFDEMRVRNIVTWNTL 135
            Q  KQ+HS I+K GL N     ++++  +     F ++     LF+ +   N   WNT+
Sbjct: 45  FQNLKQIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESIEQPNQFIWNTM 103

Query: 136 ISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G  + +       ++ RMLL  V  +  TF  LL++C +    + G+++H  +LK+G 
Sbjct: 104 IRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGL 163

Query: 194 GLNCFVSSALVDLY---GKCGFVE----------------------------DARRVFDE 222
             + FV ++L+++Y   G+ G+ E                            DARR+F+E
Sbjct: 164 ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEE 223

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  RD V WN M++ YA +   + A+A F  M+   +  +  T  +++++C   GS +LG
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
             +   +       ++ +  +L+DMY+K G++D A  +F+G+  K+++SWN M+ G+   
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
              +EA+ L R M Q +  P++VT  SIL +C  L      + +HAY  K     FL + 
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK----FLGLT 399

Query: 403 N-----ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           N     +LI+ Y+KCG+I  A Q F  +K   L +W ++I   A HG +  ++E+F +M 
Sbjct: 400 NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMR 459

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
                PD I F+ VLSACSH GLV  G + F+ M+ DY I P  +HY C+ DLLGR GL 
Sbjct: 460 DEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLF 519

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA  L+ +M ++P     G+ +GAC+VHG++ L ++AA+ L ELEP  P  Y L+SN+Y
Sbjct: 520 DEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIY 579

Query: 578 ASERCWFDVARLRKMMRDN 596
           A+   W DVAR+R  + D 
Sbjct: 580 ATAGRWDDVARIRTKLNDK 598



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 210/415 (50%), Gaps = 44/415 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF--------------- 114
           LK  AK G  Q+GKQ+H H++KLGL +   +   ++++Y +                   
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 115 ----------------DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
                           DD  +LF+E+ VR+ V+WN +I+G    G       +F+ M   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NV  +  T  ++L AC Q+  +E+G  + S+I   G G N  + +AL+D+Y KCG ++ A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R +F+ +  +D++ WNVM+  Y+       A+A+F  M+   ++ +  TF S++ +C  L
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 277 GSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           G+  LG+ IH  + K+   L +  + TSL+DMYAK GNI+ A +VF GM  K++ SWN M
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG-----SLSISCETRQVHAYA 390
           + G   +G    A++L R M    F PD++T   +LS+C       L   C +  V  Y 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           I   +Q +      +I+   + G    A     +++ +PD   W S++GA   HG
Sbjct: 499 ISPKLQHY----GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 212/423 (50%), Gaps = 45/423 (10%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL--YGKCGFVEDARRVFDEVL 224
           +LL  C    ++   +++HS I+K G     F  S L++       G +  A  +F+ + 
Sbjct: 37  TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
             +  +WN M+   +L+    GAI  +  M L G++ + +TF  L+ SC  +G+++ G+Q
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGN------------------------------- 313
           IHG V+K   + D  V TSL++MYA+NG                                
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +DDA R+F+ +  ++ VSWN M+ G+ Q+G   EA+   ++M + +  P+E T+ ++LS+
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 374 C---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           C   GSL +      V ++   +G+ + L + NALI+ YSKCG +  A   F  + E D+
Sbjct: 274 CAQSGSLELG---NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDI 330

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           ++W  +IG Y+     KE++ +F KM    V P+ + F+ +L AC++ G +  G      
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGSI 549
           +   +  L ++  +T L D+  + G +  A  + A M  +P+S  +  A I    +HG  
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM--KPKSLGSWNAMISGLAMHGHA 448

Query: 550 GLA 552
            +A
Sbjct: 449 NMA 451


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 191/594 (32%), Positives = 322/594 (54%), Gaps = 40/594 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G QLH+ ++K+G  N   + N ++ +Y KC   D + +LFDEM  R+I +WNT+IS 
Sbjct: 205 LELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISS 264

Query: 139 IIN--CGGNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           ++           FR M  +D  R+DH T +++L A      + VGR +H+ ++K+GF  
Sbjct: 265 VVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFES 323

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM- 254
           N  V +AL+  Y KCG ++    +F+++  RD++ W  M++ Y    L D A+ VF+ M 
Sbjct: 324 NISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMP 383

Query: 255 ----------------------------RL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
                                       R+  EG++   FT + ++N+CG L  +K+ +Q
Sbjct: 384 ARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQ 443

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV--VSWNTMVVGFGQN 342
           IHG ++K  F  +  +  +L+DM  + G + DA ++F   +      + W +M+ G+ +N
Sbjct: 444 IHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARN 503

Query: 343 GDGREAVKLL-RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
               EA+ L  +  L+G+   D+V   ++L  CG+L+     +Q+H +A+K+G  + L +
Sbjct: 504 AQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGV 563

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            N++I  YSKC ++  A++ F  +   D+V+W  +I  +  H    E++ V+ KM    +
Sbjct: 564 GNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGI 623

Query: 462 RPDSIAFLEVLSACSH--GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
           +PD++ F+ ++SA  H    LV    R F  M + YHI P  EHYT L  +LG  GLL E
Sbjct: 624 KPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEE 683

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A +++  MPIEP +    A + AC++H +  + K AA+ LL ++P  P  Y LVSN+Y++
Sbjct: 684 AEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSA 743

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
              W     +R+ MR     K PG SWI    ++H+F + D+SHPQA  +++ L
Sbjct: 744 YGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGL 797



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 245/471 (52%), Gaps = 46/471 (9%)

Query: 45  LSSQ---LRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ 101
           LS+Q   L N  ++   T + H +    L +S ++  ++  K +H+ I KL     + L 
Sbjct: 72  LSNQPALLSNFPSVSNDTVNDHYYL---LDLSVRYDDVELIKAVHASIFKLA--EDIHLA 126

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVR 159
           N ++  Y+K     +  K+F  +   N+V++  +ISG    N        F RM    + 
Sbjct: 127 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 186

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L+  +F ++L  C++  D+E+G +LH+ ++K+GF    FVS+AL+ LYGKCG+++   ++
Sbjct: 187 LNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQL 246

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           FDE+  RD+  WN ++S      + + A  +F ++ R++G + D+FT S+++ +   L +
Sbjct: 247 FDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGL-A 305

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI------------------------ 314
           S +GR+IH  VIK  F+ ++ V  +L+  Y K G+I                        
Sbjct: 306 SMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITA 365

Query: 315 -------DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
                  D A  VFD M A+N +S+N ++ GF QNG+G +A+     M++      + TL
Sbjct: 366 YMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTL 425

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA--LQCFGSV 425
             +L++CG L  +  ++Q+H + +K G  +   IE AL++  ++CG +A A  +   GS 
Sbjct: 426 TGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSF 485

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVF-EKMLSHAVRPDSIAFLEVLSAC 475
            +   + WTS+I  YA +   +E+I +F +  L  A+  D +A   VL  C
Sbjct: 486 SQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVC 536



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 199/354 (56%), Gaps = 12/354 (3%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL   V+ DD+E+ + +H+ I K+   ++  +++AL+  Y K G V +A +VF  + C +
Sbjct: 96  LLDLSVRYDDVELIKAVHASIFKLAEDIH--LANALIVAYLKLGMVPNAYKVFVGLSCPN 153

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           +V +  M+S +A +     A+ +F  MR  G++ + F+F +++  C  L   +LG Q+H 
Sbjct: 154 VVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHA 213

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           +VIK  F     V+ +L+ +Y K G +D   ++FD M  +++ SWNT++    +      
Sbjct: 214 IVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYER 273

Query: 348 AVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           A +L RDM +   F  D  TL++IL +   L+ S   R++HA+ IK G ++ +S+ NALI
Sbjct: 274 AFELFRDMRRIDGFRIDHFTLSTILVAARGLA-SMVGREIHAHVIKIGFESNISVINALI 332

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
             Y+KCGSI   +  F  ++  D++TWT +I AY   GL+  ++EVF+KM +     +SI
Sbjct: 333 RFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPAR----NSI 388

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++  +LS     G  S+ L +F  M+ +   L D      LT +L   GLL+EA
Sbjct: 389 SYNAILSGFCQNGEGSKALAFFCRMVEEGVELTD----FTLTGVLNACGLLMEA 438



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 18/260 (6%)

Query: 36  NAQKHDRSVL--SSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           NAQ  +   L   SQL  +  + +   +A       L V     F + GKQ+H H +K G
Sbjct: 503 NAQPEEAISLFCQSQLEGAMVVDKVASTA------VLGVCGTLAFHEMGKQIHCHALKSG 556

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--IINCGGNVTPYFR 151
             + L + N ++ +Y KC   DD  K+F+ M   +IV+WN LI+G  +   G      + 
Sbjct: 557 FLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWS 616

Query: 152 RMLLDNVRLDHITFNSLLRACVQADD--IEVGRRLHSFILKVGFGLNCFVS--SALVDLY 207
           +M    ++ D +TF  ++ A    +   ++  RRL    +K  + ++  V   ++LV + 
Sbjct: 617 KMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLF-LSMKTIYHIDPTVEHYTSLVGVL 675

Query: 208 GKCGFVEDARRVFDEVLCR-DLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGM-KGDYF 264
           G  G +E+A  + +++    +  +W  ++ +C   +    G  A  +L+ ++ +    Y 
Sbjct: 676 GYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYI 735

Query: 265 TFSSLVNSCGTLGSSKLGRQ 284
             S+L ++ G    S + R+
Sbjct: 736 LVSNLYSAYGRWHCSDMVRE 755


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 293/544 (53%), Gaps = 6/544 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + A    +  GF++ G+Q+H +  +    +  S+ N ++ +Y KC       +LFD M  
Sbjct: 242 ASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMEN 301

Query: 127 RNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN+V+W T+I+G +  +        F ++     + D     S+L +C     I  GR++
Sbjct: 302 RNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQV 361

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+ ++K     + +V +AL+D+Y KC  + +AR VF+ +   D + +N M+  YA   LG
Sbjct: 362 HAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYAR--LG 419

Query: 245 D--GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           D  GA+ +F  MR   +K    TF SL+    +    +L +QIHGL++K    LD+   +
Sbjct: 420 DLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGS 479

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+D+Y+K   +DDA  VF  M  +++V WN M+ G  QN  G EAVKL   +      P
Sbjct: 480 ALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTP 539

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E T  ++++   +L+     +Q HA  IK G  +   I NALI+ Y+KCG I      F
Sbjct: 540 NEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLF 599

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            S    D++ W S+I  YA HG ++E++ VF  M    V P+ + F+ VLSAC+H GLV 
Sbjct: 600 ESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVD 659

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EGL +FN M + Y + P +EHY  + +L GR G L  A + +  MPIEP +    + + A
Sbjct: 660 EGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSA 719

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C + G++ + ++A E  L  +P+      L+SN+YAS+  W D  +LR+ M      K P
Sbjct: 720 CHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEP 779

Query: 603 GCSW 606
           G SW
Sbjct: 780 GYSW 783



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 206/399 (51%), Gaps = 8/399 (2%)

Query: 86  HSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN 145
           H+  +  GL   L L N +L  Y K     D  +LFD M  RN+V+W + IS     G  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 146 --------VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
                     P       D    +     S LRAC Q+     G ++H    K+G   N 
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           FV +ALV+LY K G ++ A  VFD +  R+ V W  +++ Y+       A+ +F  M L+
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLD 232

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G++ D F  +S  ++C  LG  + GRQIHG   + + + D  V  +L+D+Y K   +  A
Sbjct: 233 GVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLA 292

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            R+FD M  +N+VSW TM+ G+ QN    EA+ +   + Q  + PD     SIL+SCGSL
Sbjct: 293 RRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSL 352

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           +   + RQVHA+ IK  +++   ++NALI+ Y+KC  +  A   F ++ E D +++ ++I
Sbjct: 353 AAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 412

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
             YA  G    ++E+F KM   +++P  + F+ +L   S
Sbjct: 413 EGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSS 451



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 245/499 (49%), Gaps = 14/499 (2%)

Query: 36  NAQKHDRSVLSSQLRNSGTIHESTHSAHSFY-SQALKVSAKFGFLQQGKQLHSHIMKLGL 94
           + ++ D  +L +   ++G         + F  + AL+  A+    + G+Q+H    KLGL
Sbjct: 109 HGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGL 168

Query: 95  CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRR 152
              + +   ++++Y K    D    +FD +  RN VTW  +I+G    G  G     F R
Sbjct: 169 DANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGR 228

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M LD VR D     S   AC     +E GR++H +  +     +  V +AL+DLY KC  
Sbjct: 229 MGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSR 288

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +  ARR+FD +  R+LV W  M++ Y  N L   A+++F  +   G + D F  +S++NS
Sbjct: 289 LLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNS 348

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           CG+L +   GRQ+H  VIK   + D  V  +L+DMYAK  ++ +A  VF+ +   + +S+
Sbjct: 349 CGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISY 408

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N M+ G+ + GD   AV++   M   S  P  +T  S+L    S S    ++Q+H   +K
Sbjct: 409 NAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVK 468

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           +G    L   +ALI+ YSK   +  A   F  ++  D+V W ++I   A +   +E++++
Sbjct: 469 SGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKL 528

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-----SDYHILPDSEHYTCL 507
           F ++    + P+   F+ +++  S    +  G ++   +I     SD HI         L
Sbjct: 529 FARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHI------SNAL 582

Query: 508 TDLLGRVGLLVEAYDLLAS 526
            D+  + G + E   L  S
Sbjct: 583 IDMYAKCGFIEEGRLLFES 601


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 191/618 (30%), Positives = 334/618 (54%), Gaps = 38/618 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTWNTL 135
           LQ  + +H+ ++K+GL N     ++++   +    F+ +     +F  ++  N++ WNT+
Sbjct: 46  LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
             G       V+     + + ++ L  +  TF  +L++C ++   + G+++H  +LK+G 
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165

Query: 194 GLNCFVSSALVDLY-------------------------------GKCGFVEDARRVFDE 222
            L+ +V ++L+ +Y                                  G++E+A+++FDE
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +D+V WN M+S YA       A+ +F  M    ++ D  T  ++V++C   GS +LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQ+H  +    F  ++ +  +L+D+Y+K G ++ AC +F+ +  K+V+SWNT++ G+   
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK--NGVQAFLS 400
              +EA+ L ++ML+    P++VT+ SIL +C  L      R +H Y  K   GV    S
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  +LI+ Y+KCG I  A Q F S+    L +W ++I  +A HG +  S ++F +M    
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 465

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           ++PD I F+ +LSACSH G++  G   F  M  DY + P  EHY C+ DLLG  GL  EA
Sbjct: 466 IQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 525

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
            +++  M +EP      + + ACK+HG++ L +  AE L+++EP  P +Y L+SN+YAS 
Sbjct: 526 EEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASA 585

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W +VA+ R ++ D    KVPGCS IEI   +H F+  D+ HP+   +Y ML  +  L+
Sbjct: 586 GRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLL 645

Query: 641 EENNVSGHCNVLDKEMDE 658
           E+       + + +EM+E
Sbjct: 646 EKAGFVPDTSEVLQEMEE 663



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 216/431 (50%), Gaps = 49/431 (11%)

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
           D++R +H +  SLL  C     +   R +H+ ++K+G     +  S L++        E 
Sbjct: 29  DSIR-NHPSL-SLLHNCKTLQSL---RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEG 83

Query: 216 ---ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
              A  VF  +   +L++WN M   +AL+     A+ ++  M   G+  + +TF  ++ S
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG--------- 323
           C    + K G+QIHG V+K   DLD+ V TSL+ MY +NG ++DA +VFD          
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 324 ----------------------MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
                                 +  K+VVSWN M+ G+ + G+ +EA++L +DM++ +  
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 362 PDEVTLASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           PDE T+ +++S+C   GS+ +    RQVH +   +G  + L I NALI+ YSKCG +  A
Sbjct: 264 PDESTMVTVVSACAQSGSIELG---RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
              F  +   D+++W ++IG Y    L KE++ +F++ML     P+ +  L +L AC+H 
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380

Query: 479 GLVSEGLRYFNLMISDY--HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           G +  G R+ ++ I      +   S   T L D+  + G +  A+ +  S+ +     + 
Sbjct: 381 GAIDIG-RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSW 438

Query: 537 GAFIGACKVHG 547
            A I    +HG
Sbjct: 439 NAMIFGFAMHG 449



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 178/340 (52%), Gaps = 35/340 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFD------- 115
           LK  AK    ++G+Q+H H++KLG    L +   ++ +YV+        K FD       
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200

Query: 116 -----------------DMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLD 156
                            + +KLFDE+ V+++V+WN +ISG    G        F+ M+  
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           NVR D  T  +++ AC Q+  IE+GR++H +I   GFG N  + +AL+DLY KCG +E A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F+ +  +D++ WN ++  Y    L   A+ +F  M   G   +  T  S++ +C  L
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380

Query: 277 GSSKLGRQIHGLVIKQSFDLDVL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
           G+  +GR IH  + K+   +     + TSL+DMYAK G+I+ A +VF+ +  K++ SWN 
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           M+ GF  +G    +  L   M +    PD++T   +LS+C
Sbjct: 441 MIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 4/216 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G ++ G+Q+H  I   G  + L + N ++ +Y KC   +    LF+ +  +++++WN
Sbjct: 277 AQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWN 336

Query: 134 TLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           TLI G   +N        F+ ML      + +T  S+L AC     I++GR +H +I K 
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 396

Query: 192 GFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             G+    S  ++L+D+Y KCG +E A +VF+ +L + L  WN M+  +A++   D +  
Sbjct: 397 LKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFD 456

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +F+ MR  G++ D  TF  L+++C   G   LGR I
Sbjct: 457 LFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 314/616 (50%), Gaps = 40/616 (6%)

Query: 83   KQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            K +H+ ++KL    N  +    ++  Y+    F     +F     RN + WN+ +    +
Sbjct: 440  KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKS 499

Query: 142  CGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
              G+   V   F+ +    V  D   ++  L+ C +  DI +G  +H  ++K GF L+ +
Sbjct: 500  SAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVY 559

Query: 199  VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            +  AL++ YG+C  +E A +VF E+   + +LWN  +     +      + +F  M+   
Sbjct: 560  LRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSF 619

Query: 259  MKGDYFTFSSLVN-SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +K +  T   ++  S   LG   +G++ HG V++  FD DV V TSL+DMY KN ++  A
Sbjct: 620  LKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSA 679

Query: 318  CRVFDGMTAKNV-----------------------------------VSWNTMVVGFGQN 342
              VFD M  +N+                                   V+WN M+ G+   
Sbjct: 680  QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 739

Query: 343  GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
            G G+EA+     M Q    P+  ++  +L +C SLS+  + +++H  +I+NG    + + 
Sbjct: 740  GCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVA 799

Query: 403  NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
             ALI+ YSK  S+  A + F  ++   L +W  +I  +A  GL KE+I VF +M    V 
Sbjct: 800  TALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG 859

Query: 463  PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
            PD+I F  +LSAC + GL+ EG +YF+ MI+DY I+P  EHY C+ DLLGR G L EA+D
Sbjct: 860  PDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWD 919

Query: 523  LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
            L+ +MP++P +   GA +G+C++H ++  A+ AA+ L +LEP+   NY L+ N+Y+    
Sbjct: 920  LIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNR 979

Query: 583  WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            W D+  LR++M           SWI+I   +H F S ++ HP A  +Y  L  +   M++
Sbjct: 980  WEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKK 1039

Query: 643  NNVSGHCNVLDKEMDE 658
                   N + + MDE
Sbjct: 1040 LGYVPDVNCVYQNMDE 1055



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 207/439 (47%), Gaps = 49/439 (11%)

Query: 47  SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLH 106
            +L   G + +S       YS ALK   +   +  G ++H  ++K G    + L+  +++
Sbjct: 512 KELHGKGVVFDS-----EVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMN 566

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV----TPYFRRMLLDNVRLDH 162
            Y +C   +   ++F EM     + WN  I  I+N            FR+M    ++ + 
Sbjct: 567 FYGRCWGLEKANQVFHEMPNPEALLWNEAI--ILNLQSEKLQKGVELFRKMQFSFLKAET 624

Query: 163 ITFNSLLRACV-QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
            T   +L+A + +   + +G+  H ++L+ GF  + +V ++L+D+Y K   +  A+ VFD
Sbjct: 625 ATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFD 684

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN---------- 271
            +  R++  WN +VS Y+   + + A+ + N M  EG+K D  T++ +++          
Sbjct: 685 NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 744

Query: 272 -------------------------SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
                                    +C +L   + G++IH L I+  F  DV VAT+L+D
Sbjct: 745 ALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALID 804

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY+K+ ++ +A +VF  +  K + SWN M++GF   G G+EA+ +  +M +    PD +T
Sbjct: 805 MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAIT 864

Query: 367 LASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
             ++LS+C +  +  E  +     I +  +   L     +++   + G +  A     ++
Sbjct: 865 FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 924

Query: 426 K-EPDLVTWTSIIGAYAFH 443
             +PD   W +++G+   H
Sbjct: 925 PLKPDATIWGALLGSCRIH 943



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 5/193 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  A    LQ+GK++H   ++ G    + +   ++ +Y K  +  +  K+F  ++ + +
Sbjct: 768 LRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 827

Query: 130 VTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-RRLHS 186
            +WN +I G  I   G      F  M    V  D ITF +LL AC  +  I  G +   S
Sbjct: 828 ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 887

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLG 244
            I              +VDL G+ G++++A  +   + L  D  +W  ++ SC     L 
Sbjct: 888 MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLK 947

Query: 245 DGAIAVFNLMRLE 257
               A  NL +LE
Sbjct: 948 FAETAAKNLFKLE 960


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 177/484 (36%), Positives = 276/484 (57%), Gaps = 27/484 (5%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK--CGFV-------- 213
           +  + L++C       +G  LH+  ++ G   + F ++AL++LY K  C ++        
Sbjct: 53  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSV 112

Query: 214 ---------EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AIAVFNLMRLEGMK 260
                    E  R+VFDE++ RD+V WN +V    L C  +G    A+ +   M  EG +
Sbjct: 113 GGTGSSTALESVRKVFDEMIERDVVSWNTLV----LGCAEEGRHHEALVLVRKMWREGFR 168

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D FT SS++         K G ++HG  ++  FD DV V +SL+DMYA     D + +V
Sbjct: 169 PDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKV 228

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD +  ++ + WN+++ G  QNG   EA+ + R MLQ    P  VT +S++  CG+L+  
Sbjct: 229 FDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASL 288

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              +Q+HAY I+ G +  + I ++LI+ Y KCG I+ A   F  +  PD+V+WT++I  Y
Sbjct: 289 RFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGY 348

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG ++E++ +FE+M     +P+ I FL VL+ACSH GLV +G +YF  M   Y I+P 
Sbjct: 349 ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPT 408

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EH   L D+LGR G L EAY+ ++ M I+P +      + AC+VH +  LA+  A+K++
Sbjct: 409 LEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIM 468

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           ELEP    ++ ++SN+Y++   W + A LRK MR     K P CSWIE+  ++H FV+ D
Sbjct: 469 ELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLHVFVAHD 528

Query: 621 RSHP 624
           RSHP
Sbjct: 529 RSHP 532



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 229/484 (47%), Gaps = 48/484 (9%)

Query: 24  PALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGK 83
           P L       +  AQ H R  +S  LR        + S  +    ALK  A  G    G 
Sbjct: 13  PPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRS-SVPASLPAALKSCAALGLSALGA 71

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVK-------------------CKAFDDMEKLFDEM 124
            LH+  ++ G        N +L++Y K                     A + + K+FDEM
Sbjct: 72  SLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEM 131

Query: 125 RVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             R++V+WNTL+ G    G +       R+M  +  R D  T +S+L    +  D++ G 
Sbjct: 132 IERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGS 191

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H F ++ GF  + FV S+L+D+Y  C   + + +VFD +  RD +LWN +++  A N 
Sbjct: 192 EVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNG 251

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ +F  M   G++    TFSSL+  CG L S + G+Q+H  VI+  F+ +V +++
Sbjct: 252 SVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISS 311

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+DMY K G I  A  +FD M + +VVSW  M++G+  +G  REA+ L   M  G+  P
Sbjct: 312 SLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKP 371

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQ 420
           + +T  ++L++C            HA  +  G + F S+ +   ++     C ++A  L 
Sbjct: 372 NHITFLAVLTACS-----------HAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILG 420

Query: 421 CFGSVKE-----------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
             G + E           P    W++++ A   H  +  + EV +K++   + P SI   
Sbjct: 421 RAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSIGSH 478

Query: 470 EVLS 473
            VLS
Sbjct: 479 VVLS 482


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 201/655 (30%), Positives = 333/655 (50%), Gaps = 70/655 (10%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H      LK   +    + G   H  I   G  + + + N ++ +Y +C + ++   +FD
Sbjct: 10  HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 69

Query: 123 EMRVR---NIVTWNTLISGIINCGGNVTPY--FRRMLL------DNVRLDHITFNSLLRA 171
           E+  R   ++++WN+++S  +      T    F +M L       N R D I+  ++L A
Sbjct: 70  EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 129

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C     +   + +H   ++ G  L+ FV +AL+D Y KCG +E+A +VF+ +  +D+V W
Sbjct: 130 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 189

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS------------------------ 267
           N MV+ Y+ +     A  +F  MR E +  D  T++                        
Sbjct: 190 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF 249

Query: 268 -----------SLVNSCGTLGSSKLGRQIHGLVIKQSF----------DLDVLVATSLVD 306
                      S++++C +LG+   G +IH   +K             D D++V  +L+D
Sbjct: 250 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 309

Query: 307 MYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF--CP 362
           MY+K  +   A  +FD   +  +NVV+W  M+ G  Q GD  +A+KL  +M+   +   P
Sbjct: 310 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 369

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKN---GVQAFLSIENALINAYSKCGSIAGAL 419
           +  T++ IL +C  L+     +Q+HAY +++      A+  + N LIN YSKCG +  A 
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYF-VANCLINMYSKCGDVDTAR 428

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F S+ +   ++WTS++  Y  HG   E++++F+KM      PD I FL VL ACSH G
Sbjct: 429 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 488

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           +V +GL YF+ M +DY + P +EHY    DLL R G L +A+  +  MP+EP +    A 
Sbjct: 489 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 548

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC+VH ++ LA+ A  KL+E+      +Y L+SN+YA+   W DVAR+R +M+ +   
Sbjct: 549 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 608

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV------FGLMEENNVSGH 648
           K PGCSW++      +F   DRSHP +  +YA+L ++       G + E N + H
Sbjct: 609 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 663



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 216/435 (49%), Gaps = 61/435 (14%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML    RLDH T   +L+AC +      G   H  I   GF  N F+ +ALV +Y +CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 213 VEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRL------EGMKGDY 263
           +E+A  +FDE+  R   D++ WN +VS +  +     A+ +F+ M L         + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
            +  +++ +CG+L +    +++HG  I+    LDV V  +L+D YAK G +++A +VF+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 324 MTAKNVVSWNTMVVGFGQNGD-----------------------------------GREA 348
           M  K+VVSWN MV G+ Q+G+                                     EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN----------GVQAF 398
           + + R M+     P+ VT+ S+LS+C SL    +  ++HAY++KN          G    
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 399 LSIENALINAYSKCGSIAGALQCFGSV--KEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           L + NALI+ YSKC S   A   F  +  +E ++VTWT +IG +A +G S +++++F +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 457 LS--HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTDLLG 512
           +S  + V P++     +L AC+H   +  G +  +  +  +H    S ++   CL ++  
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIG-KQIHAYVLRHHQYDSSAYFVANCLINMYS 419

Query: 513 RVGLLVEAYDLLASM 527
           + G +  A  +  SM
Sbjct: 420 KCGDVDTARHVFDSM 434


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 174/587 (29%), Positives = 326/587 (55%), Gaps = 10/587 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL   ++ G L+ G+ +H+  +  GL + + + N ++ +Y KC    +  ++FD   
Sbjct: 112 YAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAE 171

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--IEVG 181
            R+ V+WN+L+SG +  G    +   F  M    + L+     S+++ C    D  +++ 
Sbjct: 172 ERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIA 231

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS--CYA 239
             +H  ++K G   + F+ SA++D+Y K G + +A  +F  V   ++V++N M++  C  
Sbjct: 232 EAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRT 291

Query: 240 LNCLG----DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
              +G      A+ +++ ++  GM+   FTFSS++ +C   G  + G+QIHG VIK +F 
Sbjct: 292 ETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQ 351

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
            D  + ++L+D+Y  +G ++D  R F      ++V+W  MV G  QN    +A+ L  + 
Sbjct: 352 EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHES 411

Query: 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
           L     PD  T++S++++C SL+++    Q+  +A K+G   F  + N+ ++ Y++ G +
Sbjct: 412 LGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDV 471

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + F  ++  D+V+W+++I  +A HG +++++  F++M+   V P+ I FL VL+AC
Sbjct: 472 DAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTAC 531

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           SHGGLV EGLRY+  M  DY + P  +H TC+ DLLGR G L +A   +++         
Sbjct: 532 SHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVI 591

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
             + + +C++H  +   +  A +++ELEP+   +Y ++ N+Y         ++ R +M+ 
Sbjct: 592 WRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQ 651

Query: 596 NCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
               K PG SWIE+   +H+FV+ D+SHP++  +Y  L  +   +E+
Sbjct: 652 RGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEK 698



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 194/399 (48%), Gaps = 14/399 (3%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY----FRRM 153
           L L+N +L  Y +        +L DEM  RN V++N LI      G  + P       R 
Sbjct: 43  LFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREG--LAPLSLETLARA 100

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
               V +D  ++ + L AC +A  +  GR +H+  +  G     FVS++LV +Y KCG +
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
            +ARRVFD    RD V WN +VS Y      +  + VF +MR  GM  + F   S++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 274 GTLGSSKL--GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
              G   +     +HG VIK   D DV + ++++DMYAK G + +A  +F  +   NVV 
Sbjct: 221 SGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVM 280

Query: 332 WNTMVVGFGQNGD------GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +NTM+ GF +           EA+ L  ++      P E T +S+L +C         +Q
Sbjct: 281 FNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQ 340

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           +H   IK   Q    I +ALI+ Y   G +    +CF S  + D+VTWT+++     + L
Sbjct: 341 IHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNEL 400

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            ++++ +F + L   ++PD      V++AC+   +   G
Sbjct: 401 HEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAG 439



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 15/342 (4%)

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           F+ + L+  Y + G    ARR+ DE+  R+ V +N+++  Y+   L   ++      R  
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D F++++ + +C   G  + GR +H L I       V V+ SLV MY+K G + +A
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC--- 374
            RVFD    ++ VSWN++V G+ + G   E V++   M +G    +   L S++  C   
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 375 --GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
             G++ I+     VH   IK G+ + + + +A+I+ Y+K G++  A   F SV+EP++V 
Sbjct: 224 GDGTMDIA---EAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVM 280

Query: 433 WTSIIGAYAF------HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           + ++I  +          ++ E++ ++ ++ S  ++P    F  VL AC+  G +  G +
Sbjct: 281 FNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQ 340

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               +I  Y    D    + L DL    G + + +    S P
Sbjct: 341 IHGQVIK-YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP 381


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 299/555 (53%), Gaps = 3/555 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G ++    ++ G    L + + +++  VK     D +K+FD M  +++V WN++I G + 
Sbjct: 164 GMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQ 223

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F  M+   +R   +T  +LL+AC Q+   +VG   HS++L +G G + FV
Sbjct: 224 KGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFV 283

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++LVD+Y   G    A  VFD +  R L+ WN M+S Y  N +   + A+F  +   G 
Sbjct: 284 LTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T  SL+  C      + GR +H  +I++  +  ++++T++VDMY+K G I  A  
Sbjct: 344 GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATI 403

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF  M  KNV++W  M+VG  QNG   +A+KL   M +     + VTL S++  C  L  
Sbjct: 404 VFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGS 463

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS-VKEPDLVTWTSIIG 438
             + R VHA+ I++G      I +ALI+ Y+KCG I  A + F +     D++   S+I 
Sbjct: 464 LTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIM 523

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            Y  HG  + ++ V+ +M+   ++P+   F+ +L+ACSH GLV EG   F+ M  D+ + 
Sbjct: 524 GYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVR 583

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  +HY CL DL  R G L EA +L+  MP +P +D L A +  C+ H +  +    A++
Sbjct: 584 PQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADR 643

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L+ L+      Y ++SN+YA  R W  V  +R +MR     K+PG S IE+  +++TF +
Sbjct: 644 LISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFA 703

Query: 619 SDRSHPQAVHMYAML 633
           SD SHP    +Y +L
Sbjct: 704 SDDSHPSWADIYQLL 718



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 226/434 (52%), Gaps = 8/434 (1%)

Query: 58  STHSAHSFYSQALKVSAKF-----GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           S H A  F++QA  V +         L   K +H+ I+K  +  +  L  +++ VY    
Sbjct: 35  SVHHA-PFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLG 93

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLR 170
                  +FD+  +      N +I+G +    +  V   FR M   ++ ++  T    L+
Sbjct: 94  FLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALK 153

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           AC    D EVG  +    ++ GF L+ +V S++V+   K G++ DA++VFD +  +D+V 
Sbjct: 154 ACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVC 213

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN ++  Y    L   +I +F  M   G++    T ++L+ +CG  G  K+G   H  V+
Sbjct: 214 WNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVL 273

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
                 DV V TSLVDMY+  G+   A  VFD M +++++SWN M+ G+ QNG   E+  
Sbjct: 274 ALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYA 333

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L R ++Q     D  TL S++  C   S     R +H+  I+  +++ L +  A+++ YS
Sbjct: 334 LFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYS 393

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG+I  A   FG + + +++TWT+++   + +G +++++++F +M    V  +S+  + 
Sbjct: 394 KCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVS 453

Query: 471 VLSACSHGGLVSEG 484
           ++  C+H G +++G
Sbjct: 454 LVHCCAHLGSLTKG 467



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF-DEMRVRNIVTW 132
           A  G L +G+ +H+H ++ G      + + ++ +Y KC      EKLF +E  +++++  
Sbjct: 459 AHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILC 518

Query: 133 NTLI--SGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL-HSFIL 189
           N++I   G+   G      + RM+ + ++ +  TF SLL AC  +  +E G+ L HS   
Sbjct: 519 NSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMER 578

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
                      + LVDL+ + G +E+A  +  ++
Sbjct: 579 DHDVRPQHKHYACLVDLHSRAGRLEEADELVKQM 612


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 263/474 (55%), Gaps = 1/474 (0%)

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           R L    R D  TF   L AC +  D+  G  +       G+  + FV S+L+ LY + G
Sbjct: 98  RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWG 157

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            + DA +VF  +  RD V W+ MV+ +        AI ++  MR +G+KGD      ++ 
Sbjct: 158 AMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQ 217

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C    + ++G  +HG +++    +DV+ ATSLVDMYAKNG +D ACRVF  M  +N VS
Sbjct: 218 ACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS 277

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           W+ M+ GF QNG   EA++L R+M      PD   L S L +C ++      R VH + +
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIV 337

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           +        +  A I+ YSKCGS+A A   F  + + DL+ W ++I     HG  ++++ 
Sbjct: 338 RR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALT 396

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F++M    +RPD   F  +LSA SH GLV EG  +F  M++ + I P  +HY CL DLL
Sbjct: 397 LFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLL 456

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
            R GL+ EA DLL SM  EP      A +  C  +  + L +  A+ +LEL+P      A
Sbjct: 457 ARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLA 516

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           LVSN+YA+ + W  V ++RK+M+D+   K+PGCS IEI G  H FV  D+SHPQ
Sbjct: 517 LVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQ 570



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 234/442 (52%), Gaps = 19/442 (4%)

Query: 42  RSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ 101
           R   +S LR    +  +     + ++ AL   A+ G L+ G+ +       G  + + + 
Sbjct: 87  RGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVR 159
           + +LH+Y +  A  D  K+F  M  R+ VTW+T+++G ++ G   +    +RRM  D V+
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D +    +++AC  A ++ +G  +H  +L+ G  ++   +++LVD+Y K G ++ A RV
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  ++ R+ V W+ M+S +A N   D A+ +F  M+  G++ D     S + +C  +G  
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           KLGR +HG ++++ FD + ++ T+ +DMY+K G++  A  +F+ ++ ++++ WN M+   
Sbjct: 327 KLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACC 385

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNG 394
           G +G G++A+ L ++M +    PD  T AS+LS+     +  E      R V+ + I   
Sbjct: 386 GAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPA 445

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVF 453
            + ++     L++  ++ G +  A     S+K EP +  W +++       L+ + +E+ 
Sbjct: 446 EKHYV----CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGC----LNNKKLELG 497

Query: 454 EKMLSH--AVRPDSIAFLEVLS 473
           E +  +   ++PD +  L ++S
Sbjct: 498 ESIADNILELQPDDVGVLALVS 519


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 263/474 (55%), Gaps = 1/474 (0%)

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           R L    R D  TF   L AC +  D+  G  +       G+  + FV S+L+ LY + G
Sbjct: 98  RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWG 157

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            + DA +VF  +  RD V W+ MV+ +        AI ++  MR +G+KGD      ++ 
Sbjct: 158 AMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQ 217

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C    + ++G  +HG +++    +DV+ ATSLVDMYAKNG +D ACRVF  M  +N VS
Sbjct: 218 ACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS 277

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           W+ M+ GF QNG   EA++L R+M      PD   L S L +C ++      R VH + +
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIV 337

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
           +        +  A I+ YSKCGS+A A   F  + + DL+ W ++I     HG  ++++ 
Sbjct: 338 RR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALT 396

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511
           +F++M    +RPD   F  +LSA SH GLV EG  +F  M++ + I P  +HY CL DLL
Sbjct: 397 LFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLL 456

Query: 512 GRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571
            R GL+ EA DLL SM  EP      A +  C  +  + L +  A+ +LEL+P      A
Sbjct: 457 ARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLA 516

Query: 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           LVSN+YA+ + W  V ++RK+M+D+   K+PGCS IEI G  H FV  D+SHPQ
Sbjct: 517 LVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQ 570



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 234/442 (52%), Gaps = 19/442 (4%)

Query: 42  RSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ 101
           R   +S LR    +  +     + ++ AL   A+ G L+ G+ +       G  + + + 
Sbjct: 87  RGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVR 159
           + +LH+Y +  A  D  K+F  M  R+ VTW+T+++G ++ G   +    +RRM  D V+
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D +    +++AC  A ++ +G  +H  +L+ G  ++   +++LVD+Y K G ++ A RV
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F  ++ R+ V W+ M+S +A N   D A+ +F  M+  G++ D     S + +C  +G  
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           KLGR +HG ++++ FD + ++ T+ +DMY+K G++  A  +F+ ++ ++++ WN M+   
Sbjct: 327 KLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACC 385

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNG 394
           G +G G++A+ L ++M +    PD  T AS+LS+     +  E      R V+ + I   
Sbjct: 386 GAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPA 445

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVF 453
            + ++     L++  ++ G +  A     S+K EP +  W +++       L+ + +E+ 
Sbjct: 446 EKHYV----CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGC----LNNKKLELG 497

Query: 454 EKMLSH--AVRPDSIAFLEVLS 473
           E +  +   ++PD +  L ++S
Sbjct: 498 ESIADNILELQPDDVGVLALVS 519


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 323/594 (54%), Gaps = 29/594 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD--MEKL-FDEMRV 126
           L++S     L+  +Q HS I+         L  +++  Y     F D  M KL FD +  
Sbjct: 33  LQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYA---TFGDSIMSKLVFDSVHT 89

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRM---LLDNVRLDHITFNSLLRACVQADDIEVG 181
           +N+  WN+LI+G +      N    FR+M   LL     D  T  ++ +   +  D+ +G
Sbjct: 90  KNVYLWNSLINGYVKNHQFDNAIVLFRQMGRCLLP----DDYTLATISKVSGEIQDLVLG 145

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYAL 240
           + +H   L++GF  +  V ++++ +Y +C    DA +VFDE+  R++  +NV++S C AL
Sbjct: 146 KLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAAL 205

Query: 241 NCLGDGAIA----VFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGRQIHGLVIKQSFD 295
             L     A     F  M+ +G   D FT +SL+  C  + G    GR++H  ++K   D
Sbjct: 206 GNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLD 265

Query: 296 L----DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
           L    DV + +SL+DMY+++  +  + RVFD M ++N+  W  M+ G+ QNG    A+ L
Sbjct: 266 LKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALIL 325

Query: 352 LRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
            R+M  +    P+ V+L S+L +CG L      +QVHA++IK     ++S+ NALI+ Y+
Sbjct: 326 FREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYA 385

Query: 411 KCGSIAGALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           KCGS+  A + F  GS  + D +TW+SII AY  HG  +E++  + +ML   ++PD I  
Sbjct: 386 KCGSLDYARRVFDNGSYSK-DAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITV 444

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLSAC   GLV EG+  +N + ++Y + P  E   C+ DLLGR G L +A D +  MP
Sbjct: 445 VGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMP 504

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           I P     G+ + A  +HG+      A   LLELEP  P NY  +SN YAS R W ++  
Sbjct: 505 IIPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITE 564

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           +R MM++    KVPG SWI I+ + H F  +D+ HP +  +Y ML  +  +M +
Sbjct: 565 VRSMMKERGLRKVPGISWITISDKNHFFTVADKVHPSSSSIYEMLDDLVSIMTD 618



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 194/401 (48%), Gaps = 33/401 (8%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL+  +    +++ ++ HS IL   F  N F+++ L+  Y   G    ++ VFD V  ++
Sbjct: 32  LLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKN 91

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           + LWN +++ Y  N   D AI +F  M    +  DY T +++    G +    LG+ IHG
Sbjct: 92  VYLWNSLINGYVKNHQFDNAIVLFRQMGRCLLPDDY-TLATISKVSGEIQDLVLGKLIHG 150

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
             ++  F  D++V  S++ MY +     DA +VFD M  +NV S+N ++ G    G+   
Sbjct: 151 KSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDY 210

Query: 348 AV-----KLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-------RQVHAYAIKNGV 395
           ++        R M    +  D  T+AS+L  C      C++       R++H Y +KNG+
Sbjct: 211 SLYADLWNFFRRMQCQGYNADAFTVASLLPMC------CDSDGKFDHGRELHCYLVKNGL 264

Query: 396 Q----AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
                + + + ++LI+ YS+   +  + + F  +K  ++  WT++I  Y  +G  + ++ 
Sbjct: 265 DLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALI 324

Query: 452 VFEKM-LSHAVRPDSIAFLEVLSACSH--GGLVSEGLRYFNLMI--SDYHILPDSEHYTC 506
           +F +M     +RP+ ++ + VL AC    G +  + +  F++ +  +DY  L ++     
Sbjct: 325 LFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNA----- 379

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           L D+  + G L  A  +  +      + T  + I A  +HG
Sbjct: 380 LIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHG 420


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 310/556 (55%), Gaps = 18/556 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G QLHS I+K G   ++ + N ++ +Y +     +  ++F+EM+ R++V+WN +ISG   
Sbjct: 183 GLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQ 242

Query: 142 ---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
               G      F +M    + LD I+F S + AC    ++E+ R++H   +K     +  
Sbjct: 243 EGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVA 302

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           VS+ L+  Y KC  +EDAR VF  +  R++V W  M+S          A++ FN MRL+G
Sbjct: 303 VSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMISIDEAE-----AVSFFNEMRLDG 357

Query: 259 MKGDYFTFSSLVNSCGTLGSSKL-GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           +  +  TF  L+++  T+G   + G+ +HG   K  F     V  S++ MYAK  ++ D+
Sbjct: 358 VYPNDVTFVGLIHAI-TIGELVVQGKMVHGFCTKTGFSSKSNVCNSIITMYAKFKSMQDS 416

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +VF  +  +++++WN ++ GF  NG  +EA++     L  S  P++ +  SIL++ G+ 
Sbjct: 417 VKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIES-KPNQYSFGSILNAIGAA 475

Query: 378 S-ISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
             +S +  Q  H+  IK G+     + +AL++ Y+K GSI  + + F    +     WT+
Sbjct: 476 EDVSLKYGQRCHSQIIKLGLNTDPIVSSALLDMYAKRGSICESQKVFVETPQQSQFAWTT 535

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           II AYA HG  +  +  FE+M    VRPDSI FL +L+AC   G+V  G   F  M+ DY
Sbjct: 536 IISAYARHGDYESVMNWFEEMRRLEVRPDSITFLSILTACGRRGMVDMGCHLFGSMVKDY 595

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            I P +EHY+CL D+LGR G L EA  L++ +P  P    L + +GAC+VHG++ + +  
Sbjct: 596 QIEPSAEHYSCLVDMLGRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERV 655

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG---- 611
           A+ L+E+EP++  +Y L+SN+YA    W  VA++RK MR     K  G SW+++ G    
Sbjct: 656 ADALMEMEPTESGSYVLMSNLYAEIGKWEMVAKVRKRMRVKGVKKEVGFSWVDVGGIDSS 715

Query: 612 -EIHTFVSSDRSHPQA 626
             +H F S D SHPQ+
Sbjct: 716 LSLHGFSSGDTSHPQS 731



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 252/507 (49%), Gaps = 22/507 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + ALK    +  L  G Q+H   +     N   + N ++++Y K   F     +F+ +  
Sbjct: 70  ANALKACRGYPLL--GSQIHGFSIIHEFVNVTIVSNSLMNMYCKSGQFCKALCIFENLTH 127

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRAC---VQADDIEVGRR 183
            +IV+WNT++SG      +   +  +M    V  D +T+ ++L  C   V+A  + +G +
Sbjct: 128 PDIVSWNTVLSGC-QTSEDAFSFACKMNSSGVVFDAVTYTTVLSFCWRHVEAYFL-IGLQ 185

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LHS I+K GF    FV +AL+ +Y + G + +ARRVF+E+  RDLV WN M+S Y+   +
Sbjct: 186 LHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGI 245

Query: 244 -GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G  AI++F  M   GM+ D  +F+S V++CG   + +L RQIHGL IK   +  V V+ 
Sbjct: 246 YGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVAVSN 305

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
            L+  Y K   I+DA  VF  M  +NVVSW TM+     + D  EAV    +M      P
Sbjct: 306 VLISTYFKCQVIEDARLVFQNMNERNVVSWTTMI-----SIDEAEAVSFFNEMRLDGVYP 360

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++VT   ++ +     +  + + VH +  K G  +  ++ N++I  Y+K  S+  +++ F
Sbjct: 361 NDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNVCNSIITMYAKFKSMQDSVKVF 420

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +K  D++ W ++I  +  +GL +E+I  F   L  + +P+  +F  +L+A      VS
Sbjct: 421 QELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIES-KPNQYSFGSILNAIGAAEDVS 479

Query: 483 EGLRYFNL---MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
             L+Y       I    +  D    + L D+  + G + E+  +    P + +       
Sbjct: 480 --LKYGQRCHSQIIKLGLNTDPIVSSALLDMYAKRGSICESQKVFVETPQQSQF-AWTTI 536

Query: 540 IGACKVHGSI-GLAKWAAE-KLLELEP 564
           I A   HG    +  W  E + LE+ P
Sbjct: 537 ISAYARHGDYESVMNWFEEMRRLEVRP 563


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 175/481 (36%), Positives = 275/481 (57%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T    L++C +   ++VGR + ++ +K G   + FV S+L+ +Y  CG V  AR VF
Sbjct: 119 DQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVF 178

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D      +V+WN +V+ Y  N      + +F  M   G+  D  T  S+V +CG +G +K
Sbjct: 179 DAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAK 238

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG+ + G V ++    +  + T+L+DMYAK G I  A R+FDGM +++VV+W+ M+ G+ 
Sbjct: 239 LGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYT 298

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q    REA+ L  +M      P++VT+ S+LS+C  L      + VH+Y  +  +     
Sbjct: 299 QADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTI 358

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  AL++ Y+KCG I  A++ F S+   +  TWT++I   A +G  +E++E+F  M    
Sbjct: 359 LGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAG 418

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + P  + F+ VL ACSH  LV EG R+F+ M  DY I P  EHY C+ DLLGR GL+ EA
Sbjct: 419 IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEA 478

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           Y  + +MPIEP +    A + +C VH ++G+ + A ++++ L PS   +Y L+SN+YAS 
Sbjct: 479 YQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASA 538

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
             W D A +RK M+D    K PGCS IE+ G +  F + D  HP+   +Y  +  + G +
Sbjct: 539 GQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRI 598

Query: 641 E 641
           +
Sbjct: 599 K 599



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 201/394 (51%), Gaps = 15/394 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  ++   L  G+ + ++ +K GL     + + ++H+Y  C        +FD      
Sbjct: 126 ALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESG 185

Query: 129 IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V WN +++  +  G    V   F+ ML   V  D +T  S++ AC +  D ++G+ +  
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
            + + G   N  + +AL+D+Y KCG +  ARR+FD +  RD+V W+ M+S Y        
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 305

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F+ M+L  ++ +  T  S++++C  LG+ + G+ +H  V ++   L  ++ T+LVD
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVD 365

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            YAK G IDDA   F+ M  KN  +W  ++ G   NG GREA++L   M +    P +VT
Sbjct: 366 FYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVT 425

Query: 367 LASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
              +L +C    +  E R+        Y IK  V+ +      +++   + G +  A Q 
Sbjct: 426 FIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHY----GCMVDLLGRAGLVDEAYQF 481

Query: 422 FGSVK-EPDLVTWTSIIGAYAFH---GLSKESIE 451
             ++  EP+ V W +++ + A H   G+ +E+++
Sbjct: 482 IRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALK 515



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 10/319 (3%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G  + GK +  H+ + GL     L   ++ +Y KC       +LFD M+ R++V W+ 
Sbjct: 233 RIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSA 292

Query: 135 LISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG             F  M L  V  + +T  S+L AC     +E G+ +HS++ +  
Sbjct: 293 MISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKR 352

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
             L   + +ALVD Y KCG ++DA   F+ +  ++   W  ++   A N  G  A+ +F+
Sbjct: 353 LSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 412

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAK 310
            MR  G++    TF  ++ +C      + GR+ H   + + + +   V     +VD+  +
Sbjct: 413 SMREAGIEPTDVTFIGVLMACSHSCLVEEGRR-HFDSMARDYGIKPRVEHYGCMVDLLGR 471

Query: 311 NGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQN---GDGREAVKLLRDMLQGSFCPDEVT 366
            G +D+A +    M  + N V W  ++     +   G G EA+K +   L  S   D V 
Sbjct: 472 AGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIIS-LNPSHSGDYVL 530

Query: 367 LASILSSCGSLSISCETRQ 385
           L++I +S G    +   R+
Sbjct: 531 LSNIYASAGQWKDAAMVRK 549


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/473 (36%), Positives = 273/473 (57%), Gaps = 5/473 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           + + +LR CV    I   ++ H+ IL  GF  N  + + L+ +Y KCG ++DAR+VFD++
Sbjct: 8   SLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKM 67

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
           + R++  WN++++ YA NC    A+ VF+     G + D+FT   +  +C  +G S LG+
Sbjct: 68  VERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGK 127

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            +H  VI+  F+  V+V +S++D YAK G + DA R F  M+ ++ V WN M+VG G+  
Sbjct: 128 MLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKAC 187

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF---LS 400
             R+A++  RDML      D  T+ SILS CG      + +++H   +KN  Q F   ++
Sbjct: 188 FFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKN--QIFGCEVA 245

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I N+LI+ Y+KCG +  + + F ++ E +LVTWTS+I  Y  HG   E++ +F+KM    
Sbjct: 246 IGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCG 305

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            +P+ +    +L++CSH GL+ +G + F  +  DY   P +EHY C+ DLLGR G L EA
Sbjct: 306 FQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEA 365

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           ++L+ +M     +   GA +  C +H +I + + AA  L ELEP    NY  + ++Y S 
Sbjct: 366 FELIKNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIALCSMYDSL 425

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             W  V+R R  MR+    K PGCSWI +AG +H F   D SHP+   +Y  L
Sbjct: 426 GIWDGVSRTRAKMRELGLVKTPGCSWITVAGRVHKFYQEDLSHPETQMIYETL 478



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 5/281 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H       K  A  G    GK LHS ++++G    + + + VL  Y KC    D  + F 
Sbjct: 107 HFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFV 166

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            M  R+ V WN +I G+       +    FR ML + V++D  T  S+L  C    D+  
Sbjct: 167 NMSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMK 226

Query: 181 GRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           G+ +H  ++K   FG    + ++L+D+Y KCG + D+ +VF  +   +LV W  M+SCY 
Sbjct: 227 GKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYG 286

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDV 298
           ++  G  A+A+F  M+  G + +  T ++++ SC   G  + GR+I + + +   F+   
Sbjct: 287 VHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSA 346

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMVVG 338
                +VD+  + G +++A  +   M +    S W  ++ G
Sbjct: 347 EHYACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLAG 387


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 192/608 (31%), Positives = 316/608 (51%), Gaps = 68/608 (11%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK++H H++K+G  + + +QN ++++Y  C    D  KLFDE  V               
Sbjct: 160 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV--------------- 204

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                             LD +++NS+L   V+  D+E  +     I       N   S+
Sbjct: 205 ------------------LDSVSWNSILAGYVKKGDVEEAK----LIFDQMPQRNIVASN 242

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +++ L GK G V +A ++F+E+  +D+V W+ ++S Y  N + + A+ +F  M   GM+ 
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D     S++++C  L   K G+ IHGLVI+   +  V +  +L+ MY+ +G I DA ++F
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF 362

Query: 322 DG-------------------------------MTAKNVVSWNTMVVGFGQNGDGREAVK 350
           +G                               M  K++VSW+ ++ G+ Q+    E + 
Sbjct: 363 NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLA 422

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L  +M  G   PDE  L S++S+C  L+   + + VHAY  KNG++  + +   L++ Y 
Sbjct: 423 LFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYM 482

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  AL+ F  ++E  + +W ++I   A +GL + S+++F +M ++ V P+ I F+ 
Sbjct: 483 KCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMG 542

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL AC H GLV EG  +F  MI  + I P+ +HY C+ DLLGR GLL EA  L+ SMP+ 
Sbjct: 543 VLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMA 602

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P   T GA +GACK HG   + +    KL+EL+P     + L+SN++AS+  W DV  +R
Sbjct: 603 PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVR 662

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCN 650
            MM+     K PGCS IE  G +H F++ D++HP    +  ML  +   ++    +   N
Sbjct: 663 GMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTN 722

Query: 651 VLDKEMDE 658
            +  ++DE
Sbjct: 723 EVSLDIDE 730



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 195/420 (46%), Gaps = 58/420 (13%)

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFV--EDARRVFDEVLCRDLVLWNVMVSCYAL 240
           R+ S ++  GF  + F +S L+       F+  + + ++FD +   +  +WN M+  Y  
Sbjct: 59  RILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQ 118

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           +   + A+ ++ LM    +  D +T+  +V +C        G++IH  V+K  FD DV V
Sbjct: 119 SNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYV 178

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +L++MYA  GN+ DA ++FD     + VSWN+++ G+ + GD  EA KL+ D +    
Sbjct: 179 QNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEA-KLIFDQM---- 233

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P    +AS                                 N++I    K G +  A +
Sbjct: 234 -PQRNIVAS---------------------------------NSMIVLLGKMGQVMEAWK 259

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  + E D+V+W+++I  Y  +G+ +E++ +F +M ++ +R D +  + VLSAC+H  +
Sbjct: 260 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 319

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV----GLLVEAYDLL-ASMPIEPRSDT 535
           V  G      MI    I    E Y  L + L  +    G +++A  L   S  ++  S  
Sbjct: 320 VKTG-----KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQIS-- 372

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKP-VNYALVSNVYASERCWFDVARLRKMMR 594
             + I  C   GS+  A+     L ++ P K  V+++ V + YA   C+ +   L   M+
Sbjct: 373 WNSMISGCMKCGSVEKAR----ALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQ 428



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 41/354 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A    ++ GK +H  ++++G+ + ++LQN ++H+Y       D +KLF+     + 
Sbjct: 311 LSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQ 370

Query: 130 VTWNTLISGIINCGG--------NVTP-------------------------YFRRMLLD 156
           ++WN++ISG + CG         +V P                          F  M L 
Sbjct: 371 ISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLG 430

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            +R D     S++ AC     ++ G+ +H++I K G  +N  + + L+D+Y KCG VE+A
Sbjct: 431 QIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENA 490

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF+ +  + +  WN ++   A+N L + ++ +F+ M+  G+  +  TF  ++ +C  +
Sbjct: 491 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 550

Query: 277 GSSKLGR-QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNT 334
           G    GR     ++ K   + +V     +VD+  + G +++A ++ + M  A +V +W  
Sbjct: 551 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 610

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPD----EVTLASILSSCGSLSISCETR 384
           ++    ++GD     ++ R +++    PD     V L++I +S G      E R
Sbjct: 611 LLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLSNIFASKGDWEDVLEVR 662



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 38/255 (14%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QGK +H++I K GL   + L   +L +Y+KC   ++  ++F+ M  + + +WN LI G
Sbjct: 452 LDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG 511

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR-RLHSFILKVGFGL 195
           +   G        F  M  + V  + ITF  +L AC     ++ GR    S I K G   
Sbjct: 512 LAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP 571

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N      +VDL G+ G + +A ++ + +                                
Sbjct: 572 NVKHYGCMVDLLGRAGLLNEAEKLIESM-------------------------------- 599

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
              M  D  T+ +L+ +C   G +++G ++   +I+   D D      L +++A  G+ +
Sbjct: 600 --PMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGF-HVLLSNIFASKGDWE 656

Query: 316 DACRVFDGMTAKNVV 330
           D   V   M  + VV
Sbjct: 657 DVLEVRGMMKQQGVV 671


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 293/555 (52%), Gaps = 5/555 (0%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  ++ A K  A     + G+ +H   +  G      +QN ++ +Y++C+     E +F 
Sbjct: 108 HLTFTFAAKACADLRRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVFG 167

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            +R R  V+WNT+I+G +  G        F  M+   V +D  T  S+L AC QA D+ +
Sbjct: 168 ALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLHM 227

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE-VLCRDLVLWNVMVSCYA 239
           GR +H   +  G G    V +AL+D+YGKC  +EDA+RVFDE    +D+V W  M+  Y 
Sbjct: 228 GRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYV 287

Query: 240 LNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           LN     A A+ + M +    + +  T   L+++C +L S K  +  H L I+     D 
Sbjct: 288 LNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDT 347

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           +V T+LVD YAK G +     V +   ++   +WN  + G+     G++A+ L + ML  
Sbjct: 348 VVETALVDCYAKCGYMGMIDMVVE-KGSRRTETWNAAISGYTHREQGKKALALFKQMLAE 406

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
           S  PD  T+AS++ +    +   + + +H   +  G      I   LIN Y+K G +  A
Sbjct: 407 SVRPDSATMASVIPAYAESADLVQAKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVA 466

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  + E D+V WT++I  Y  HG ++ +I ++ +M+   V P+++    ++ +CSH 
Sbjct: 467 WELFQCLPEKDVVAWTTVIAGYGMHGHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHA 526

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           G+V EGLR FN M   + ++P++EHY CL D+LGR G + EAY L+  MP EP +    A
Sbjct: 527 GMVDEGLRLFNDMRGVHGLMPNAEHYLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSA 586

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +GAC +H ++   + AA+ L ELEP    NY L+  VYA+   W DV  L ++M     
Sbjct: 587 LLGACVLHENVEFGEVAAKHLFELEPDNVGNYVLLGKVYAAADRWSDVQDLWRVMEGRGL 646

Query: 599 HKVPGCSWIEIAGEI 613
           HK PG S ++   E+
Sbjct: 647 HKDPGSSVVDAKSEV 661



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 213/457 (46%), Gaps = 25/457 (5%)

Query: 84  QLHSHIMKLGL---CNKLSLQNQVLHVYVKC-KAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           QLH+ ++K G    C+ + L   +L  Y  C + FD    L    +   +   NTL+   
Sbjct: 31  QLHALLLKSGHLLHCDSIHL---LLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSY 87

Query: 140 INCGGNVTPYFRRMLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
              G N        L   +R  DH+TF    +AC        GR +H   L  GFG + +
Sbjct: 88  TGLGFNRQAL---ALYSQMRAFDHLTFTFAAKACADLRRRRHGRAVHGRALTAGFGGDGY 144

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AIAVFNLM 254
           V +ALV +Y +C  V  A  VF  +  R  V WN +++     C+ DG    A+ VF  M
Sbjct: 145 VQNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVIT----GCVKDGRAERALEVFETM 200

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  D  T  S++ +C       +GR +H L + +       V  +L+DMY K  ++
Sbjct: 201 VGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSL 260

Query: 315 DDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILS 372
           +DA RVFD  +  K+VVSW  M+  +  N    +A  L  +ML  S   P+ VT+  +LS
Sbjct: 261 EDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLS 320

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C SL      +  HA  I+ G+ +   +E AL++ Y+KCG + G +            T
Sbjct: 321 ACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYM-GMIDMVVEKGSRRTET 379

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG-LVSEGLRYFNLM 491
           W + I  Y      K+++ +F++ML+ +VRPDS     V+ A +    LV     +  L+
Sbjct: 380 WNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQAKNIHCCLL 439

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           I     L  ++  T L ++  + G L  A++L   +P
Sbjct: 440 IRG--CLGSTDIATGLINVYAKAGDLGVAWELFQCLP 474



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 3/170 (1%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           ES     +  +  +   A+   L Q K +H  ++  G      +   +++VY K      
Sbjct: 406 ESVRPDSATMASVIPAYAESADLVQAKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGV 465

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQ 174
             +LF  +  +++V W T+I+G    G   T    + RM+   V  + +T  SL+ +C  
Sbjct: 466 AWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSH 525

Query: 175 ADDIEVGRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           A  ++ G RL + +  V G   N      LVD+ G+ G +E+A R+  ++
Sbjct: 526 AGMVDEGLRLFNDMRGVHGLMPNAEHYLCLVDMLGRAGRIEEAYRLIQDM 575


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 280/486 (57%), Gaps = 6/486 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  L+  C     +  G R+H  IL  G   + F+++ L+ +Y   G V+ AR+VFD+ 
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG----TLGSS 279
             R + +WN +     L   G+  + ++  M   G++ D FT++ ++ +C     T    
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHL 198

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G++IH  + ++ ++  V + T+LVDMYA+ G +D A  VF+GM  +NVVSW+ M+  +
Sbjct: 199 TKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY 258

Query: 340 GQNGDGREAVKLLRDMLQGS--FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            +NG   EA++  R+M+  +    P+ VT+ S+L +C SL+   + R +H Y ++ G+ +
Sbjct: 259 AKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDS 318

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            L + +AL+  Y +CG +    + F  + + D+V+W S+I +Y  HG  +++I++FE+ML
Sbjct: 319 ILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEML 378

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
           ++   P  + F+ VL ACSH GLV EG R F  M  D+ I P  EHY C+ DLLGR   L
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRL 438

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA  ++  M  EP     G+ +G+C++HG++ LA+ A+ +L  LEP    NY L++++Y
Sbjct: 439 DEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIY 498

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A  + W +V R++K++      K+PG  W+E+  ++++FVS D  +P    ++A L  + 
Sbjct: 499 AEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLA 558

Query: 638 GLMEEN 643
             M+E 
Sbjct: 559 EDMKEK 564



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 192/376 (51%), Gaps = 10/376 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G ++H HI+  G      L  +++ +Y    + D   K+FD+ R R I  WN L   
Sbjct: 93  LSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152

Query: 139 II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV----QADDIEVGRRLHSFILKVG 192
           +     G  V   + +M    V  D  T+  +L+ACV     AD +  G+ +H+ + + G
Sbjct: 153 LTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRG 212

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +  + ++ + LVD+Y + G V+ A  VF+ +  R++V W+ M++CYA N     A+  F 
Sbjct: 213 YNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272

Query: 253 LMRLEGMKG--DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
            M  E      +  T  S++ +C +L + + GR IHG ++++  D  + V ++LV MY +
Sbjct: 273 EMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G +D   RVFD M  ++VVSWN+++  +G +G GR+A+++  +ML     P  VT  S+
Sbjct: 333 CGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSV 392

Query: 371 LSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EP 428
           L +C    +  E +++     ++ G++  +     +++   +   +  A +    ++ EP
Sbjct: 393 LGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 429 DLVTWTSIIGAYAFHG 444
               W S++G+   HG
Sbjct: 453 GPKVWGSLLGSCRIHG 468



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  A    L+QG+ +H +I++ GL + L + + ++ +Y +C   D  +++FD M  R++
Sbjct: 292 LQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDV 351

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL-HS 186
           V+WN+LIS  G+   G      F  ML +      +TF S+L AC     +E G+RL  S
Sbjct: 352 VSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFES 411

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
                G        + +VDL G+   +++A ++  ++
Sbjct: 412 MWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDM 448



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 15/208 (7%)

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           +S N ++    + G  ++A+++L         P + T   ++  CG  S   +  +VH +
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQ----ESSPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            + NG      +   LI  YS  GS+  A + F   ++  +  W ++  A    G  +E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-----YFNLMISDYHILPDSEHY 504
           + ++ KM    V  D   +  VL AC      ++ L      + +L    Y    +S  Y
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGY----NSHVY 218

Query: 505 --TCLTDLLGRVGLLVEAYDLLASMPIE 530
             T L D+  R G +  A  +   MP+ 
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFNGMPVR 246


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 289/497 (58%), Gaps = 6/497 (1%)

Query: 132 WNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           +N L+SG        T +  +RR++ D    D  TF ++L++C +   I  GR++H  I+
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
           K+GF  N +V ++LV  Y  C    DA RVFDE+L RD+V W  ++S Y    L D A+ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +F  M +E    +  TF S++ +CG  G   +G+ IHGL  K +F + + V+ +L+DMY 
Sbjct: 122 LFLRMDVEP---NAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYV 178

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G +  A +VFD +  K++VSW +++ G  Q    +EA++L +DM      PD + L S
Sbjct: 179 KCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTS 238

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +LS+C  L      R VH +  +  ++  + I  A+++ Y+KCG I  ++Q F  +   +
Sbjct: 239 VLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKN 298

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           ++TW +++   A HG + + +E+FE+M+   +RP+ + FL +L+AC H GLV+EG +YFN
Sbjct: 299 VLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFN 358

Query: 490 LMI-SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
            M    Y++ P  EHY C+ DLL R  LL EA +L  +MP+ P    +GA + ACK +G+
Sbjct: 359 WMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGN 418

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
             L +   ++ +EL+      Y L+SN++A  + W DV R+R++M++    K PG + IE
Sbjct: 419 TELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIE 478

Query: 609 IAGEIHTFVSSDRSHPQ 625
           + G+ H F+  D  HPQ
Sbjct: 479 LDGKAHEFIVGDTRHPQ 495



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 190/323 (58%), Gaps = 7/323 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  AKF  + +G+Q+H  I+K+G    + ++N ++H Y  CK F D  ++FDEM 
Sbjct: 37  FPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEML 96

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VR++V+W  +ISG +  G        F RM   +V  +  TF S+L AC +   + VG+ 
Sbjct: 97  VRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKG 153

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALNC 242
           +H    K  FG+   VS+AL+D+Y KCG +  A++VFDE+  +D+V W  ++S     NC
Sbjct: 154 IHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNC 213

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             + A+ +F  M+  G++ D    +S++++C  LG+   GR +H  + +++   D+ + T
Sbjct: 214 PKE-ALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGT 272

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           ++VDMYAK G I+ + ++F+GM  KNV++WN ++ G   +G   + ++L  +M++    P
Sbjct: 273 AMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRP 332

Query: 363 DEVTLASILSSCGSLSISCETRQ 385
           +EVT  +IL++C    +  E RQ
Sbjct: 333 NEVTFLAILTACCHCGLVNEGRQ 355


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 180/551 (32%), Positives = 301/551 (54%), Gaps = 2/551 (0%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINC 142
           +H+   KLG      + + ++  Y  C A      +FD +  ++ VTW  ++S     + 
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231

Query: 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
             +    F +M +   + +     S+L+A V      +G+ +H   +K        V  A
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGA 291

Query: 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262
           L+D+Y KCG++EDAR VF+ +   D++LW+ ++S YA +   + A  +F  M    +  +
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
            F+ S ++ +C  +    LG+QIH LVIK  ++ ++ V  +L+D+YAK  N++++  +F 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +   N VSWNT++VG+ Q+G   +A+ + ++M        +VT +S+L +C + +    
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
           T Q+H+   K+       + N+LI+ Y+KCG I  AL+ F S+ + D+V+W +II  YA 
Sbjct: 472 TVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYAL 531

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           HG + +++E+F +M     +P+ + F+ +LS C   GLV++GL  FN M  D+ I P  +
Sbjct: 532 HGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMD 591

Query: 503 HYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           HYTC+  LLGR G L +A   +  +P  P      A + +C VH ++ L K++AEK+LE+
Sbjct: 592 HYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEI 651

Query: 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRS 622
           EP     Y L+SN+YA+      VA LRK MR+    K  G SW+EI GE+H F      
Sbjct: 652 EPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSAD 711

Query: 623 HPQAVHMYAML 633
           HP    + AML
Sbjct: 712 HPDMRIINAML 722



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 253/475 (53%), Gaps = 6/475 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           G  + G+ +H+ +++ G   +L     N +L++Y K        +LFD M  RN+V++ T
Sbjct: 61  GDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVT 120

Query: 135 LISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           L+ G    GG       FRR+  +   ++H    ++L+  V  D   +   +H+   K+G
Sbjct: 121 LVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLG 180

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV S+L+D Y  CG V  AR VFD ++ +D V W  MVSCY+ N + + A+  F+
Sbjct: 181 HDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFS 240

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR+ G K + F  +S++ +   L S+ LG+ IHG  +K   D +  V  +L+DMYAK G
Sbjct: 241 KMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCG 300

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            I+DA  VF+ +   +V+ W+ ++  + Q+    +A ++   M++ S  P+E +L+ +L 
Sbjct: 301 YIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQ 360

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C +++     +Q+H   IK G ++ L + NAL++ Y+KC ++  +L+ F S+++ + V+
Sbjct: 361 ACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVS 420

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +II  Y   G +++++ VF++M +  V    + F  VL AC++   +   ++  +L I
Sbjct: 421 WNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSL-I 479

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
                  D+     L D   + G + +A  +  S+ I+    +  A I    +HG
Sbjct: 480 EKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHG 533



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 191/366 (52%), Gaps = 4/366 (1%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK +H   +K     +  +   +L +Y KC   +D   +F+ +   +++ W+ LIS    
Sbjct: 270 GKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQ 329

Query: 142 CGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
              N   +  F RM+  +V  +  + + +L+AC     +++G+++H+ ++K+G+    FV
Sbjct: 330 SYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFV 389

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+D+Y KC  +E++  +F  +   + V WN ++  Y  +   + A++VF  MR   +
Sbjct: 390 GNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHV 449

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
                TFSS++ +C    S K   QIH L+ K +F+ D +V  SL+D YAK G I DA +
Sbjct: 450 LSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK 509

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +   +VVSWN ++ G+  +G   +A++L   M +    P++VT  ++LS CGS  +
Sbjct: 510 VFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGL 569

Query: 380 SCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSII 437
             +   + ++  + + ++  +     ++    + G +  AL+  G +   P  + W +++
Sbjct: 570 VNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALL 629

Query: 438 GAYAFH 443
            +   H
Sbjct: 630 SSCVVH 635



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 169/336 (50%), Gaps = 2/336 (0%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDA 216
           +LD      LL+ C+   D   GR +H+ +++ G    L+ F ++ L++LY K G +  A
Sbjct: 44  KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAA 103

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           RR+FD +  R++V +  +V  YAL    + A  +F  ++ EG + ++F  ++++     +
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            +  L   IH    K   D +  V +SL+D Y+  G +  A  VFDG+  K+ V+W  MV
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
             + +N    +A+     M      P+   L S+L +   LS +   + +H  A+K    
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
               +  AL++ Y+KCG I  A   F  +   D++ W+ +I  YA    ++++ E+F +M
Sbjct: 284 TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +  +V P+  +   VL AC++   +  G +  NL+I
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 11/260 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L+  A   FL  G+Q+H+ ++KLG  ++L + N ++ VY KC+  ++  ++F  +R 
Sbjct: 356 SGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRD 415

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N V+WNT+I G    G   +    F+ M   +V    +TF+S+LRAC     I+   ++
Sbjct: 416 ANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQI 475

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS I K  F  +  V ++L+D Y KCG + DA +VF+ ++  D+V WN ++S YAL+   
Sbjct: 476 HSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRA 535

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV-----IKQSFDLDVL 299
             A+ +FN M     K +  TF +L++ CG+ G    G  +   +     IK S D    
Sbjct: 536 TDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDH--- 592

Query: 300 VATSLVDMYAKNGNIDDACR 319
             T +V +  + G ++DA +
Sbjct: 593 -YTCIVRLLGRAGRLNDALK 611



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 6/230 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S    +S  L+  A    ++   Q+HS I K    N   + N ++  Y KC    D  K+
Sbjct: 451 STQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKV 510

Query: 121 FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           F+ +   ++V+WN +ISG    G   +    F RM   + + + +TF +LL  C     +
Sbjct: 511 FESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLV 570

Query: 179 EVGRRL-HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV- 235
             G  L +S  +      +    + +V L G+ G + DA +   ++      ++W  ++ 
Sbjct: 571 NQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLS 630

Query: 236 SCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
           SC     +  G  +   ++ +E   +  Y   S++  + G L    L R+
Sbjct: 631 SCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRK 680


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/427 (38%), Positives = 255/427 (59%), Gaps = 1/427 (0%)

Query: 206 LYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265
           +Y KCG V DAR VFD++  RD+V W  +++ YA N +   AI +   M     + + FT
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           F+SL+ + G  G   +G Q+H L +K ++D DV V ++L+DMYA+   +D A  VFD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
           +KN VSWN ++ GF +  DG   +    +M +  F     T +S+ S+   +    + R 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           VHA+ IK+G +    + N ++  Y+K GS+  A + F  + + DLVTW +++ A A +GL
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            KE++  FE++    ++ + I FL VL+ACSHGGLV EG  YF++M  DY++ P+ +HY 
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYV 299

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
              DLLGR GLL EA   +  MP+EP +   GA +GAC++H +  + ++AA+ + EL+P 
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 359

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
                 L+ N+YAS   W D AR+RKMM+     K P CSW++I   +H FV+ D +HP+
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 419

Query: 626 AVHMYAM 632
           +  +Y M
Sbjct: 420 SGDIYRM 426



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 176/347 (50%), Gaps = 9/347 (2%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLD 161
           +Y KC A  D   +FD+M  R++V+W  LI+G      N  P         ML    R +
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQ---NYMPAEAIGLLPDMLRARFRPN 57

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
             TF SLL+A        +G ++H+  +K  +  + +V SAL+D+Y +C  ++ A  VFD
Sbjct: 58  GFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFD 117

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            ++ ++ V WN +++ +A    G+  +  F  M+  G    +FT+SS+ ++   +G+ + 
Sbjct: 118 RLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQ 177

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           GR +H  +IK    L   V  +++ MYAK+G++ DA +VFD M  +++V+WNTM+    Q
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 237

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
            G G+EAV    ++ +     +++T  S+L++C    +  E +          VQ  +  
Sbjct: 238 YGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDH 297

Query: 402 ENALINAYSKCGSIAGALQ-CFGSVKEPDLVTWTSIIGAYAFHGLSK 447
             + ++   + G +  AL   F    EP    W +++GA   H  +K
Sbjct: 298 YVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAK 344



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 2/254 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  LK +   G    G+Q+H+  +K      + + + +L +Y +C+  D    +FD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +N V+WN LI+G        T    F  M  +     H T++S+  A  +   +E GR 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++K G  L  FV + ++ +Y K G + DAR+VFD +  RDLV WN M++  A   L
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G  A+A F  +R  G++ +  TF S++ +C   G  K G+    ++   +   ++    S
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVS 300

Query: 304 LVDMYAKNGNIDDA 317
            VD+  + G + +A
Sbjct: 301 FVDLLGRAGLLKEA 314



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 119/273 (43%), Gaps = 41/273 (15%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           + H  YS      A+ G L+QG+ +H+H++K G      + N +L +Y K  +  D  K+
Sbjct: 157 ATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKV 216

Query: 121 FDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           FD M  R++VTWNT+++ +     G     +F  +    ++L+ ITF S+L AC     +
Sbjct: 217 FDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLV 276

Query: 179 EVGRRLHSFILKVGFGLNCFVSS--ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           + G+  H F +   + +   +    + VDL G+ G +++A                    
Sbjct: 277 KEGK--HYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEA-------------------- 314

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
                      I VF +     M+     + +L+ +C    ++K+G+     V +   D 
Sbjct: 315 ----------LIFVFKM----PMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD- 359

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           D      L ++YA  G  +DA RV   M A  V
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGV 392


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 299/553 (54%), Gaps = 6/553 (1%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           +H+   KLG      +   ++  Y  C A      +FD +  ++ VTW  ++S       
Sbjct: 170 IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSE--N 227

Query: 145 NVTPY----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           ++  Y    F +M +   + +     S L+A V      +G+ +H   +K  +     V 
Sbjct: 228 DIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVG 287

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
            AL+D+Y KCG +EDA  +F+ +   D++LW+ ++S YA +C  + A  +F  M    + 
Sbjct: 288 GALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVV 347

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + F+ S ++ +C  +   +LG QIH L IK  ++ ++ V  +L+DMYAK  N++++  +
Sbjct: 348 PNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEI 407

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F  +   N VSWNT++VG+ Q+G   +A+ +  +M        +VT +S+L +C + S  
Sbjct: 408 FSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSI 467

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
               Q+H+   K+       + N+LI+ Y+KCG I  AL+ F S+ E D+V+W SII AY
Sbjct: 468 KHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAY 527

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG +  ++E+F++M    ++ + + F+ +LS C   GLV++GL  FN M+ D+ I P 
Sbjct: 528 ALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPS 587

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHYTC+  LLGR G L +A   +  +P  P      A + +C VH ++ L ++AAEK+L
Sbjct: 588 MEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVL 647

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           ++EP     Y L+SN+YA+     +VA  RK MR+    K  G SW+EI GE+H F    
Sbjct: 648 DIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGS 707

Query: 621 RSHPQAVHMYAML 633
             HP    + AML
Sbjct: 708 ADHPDMRIINAML 720



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 250/475 (52%), Gaps = 6/475 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           G  + G+ +H+ +++ G   +L     N +L+ Y K        +LFD M  RN V++ T
Sbjct: 59  GDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVT 118

Query: 135 LISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           L+ G    G        FRR+  +   ++H    ++L+  V  D   +   +H+   K+G
Sbjct: 119 LMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLG 178

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV +AL+D Y  CG V  AR VFD ++ +D V W  MVSCY+ N + + A+  F+
Sbjct: 179 HDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFS 238

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR+ G K + F  +S + +   L S+ LG+ IHG  +K  +D +  V  +L+DMYAK G
Sbjct: 239 KMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCG 298

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +I+DA  +F+ +   +V+ W+ ++  + Q+    +A ++   M++    P+E +L+ +L 
Sbjct: 299 DIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQ 358

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C +++      Q+H  AIK G ++ L + NAL++ Y+KC ++  +L+ F S+++ + V+
Sbjct: 359 ACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVS 418

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +II  Y   G +++++ VF +M +  +    + F  VL AC++   +   ++  +L I
Sbjct: 419 WNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSL-I 477

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
                  D+     L D   + G + +A  +  S+ +E    +  + I A  +HG
Sbjct: 478 EKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHG 531



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 192/381 (50%), Gaps = 4/381 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + ALK +        GK +H   +K     +  +   +L +Y KC   +D   +F+ +  
Sbjct: 253 TSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPH 312

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +++ W+ LIS       N   +  F RM+   V  +  + + +L+AC     +E+G ++
Sbjct: 313 DDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQI 372

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  +K+G+    FV +AL+D+Y KC  +E++  +F  +   + V WN ++  Y  +   
Sbjct: 373 HNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFA 432

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
           + A++VF+ MR   M     TFSS++ +C    S K   QIH L+ K +F+ D +V  SL
Sbjct: 433 EDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSL 492

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D YAK G I DA +VF+ +   +VVSWN+++  +  +G    A++L   M +     ++
Sbjct: 493 IDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKAND 552

Query: 365 VTLASILSSCGSLSISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           VT  S+LS CGS  +  +   + ++  + + ++  +     ++    + G +  AL+  G
Sbjct: 553 VTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIG 612

Query: 424 SVKE-PDLVTWTSIIGAYAFH 443
            +   P  + W +++ +   H
Sbjct: 613 DIPSTPSPMVWRALLSSCVVH 633



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 165/336 (49%), Gaps = 2/336 (0%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDA 216
           +LD       L+ C+   D   GR +H+ +++ G    L+ F ++ L++ Y K G +  A
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           RR+FD +  R+ V +  ++  YAL    + A+ +F  ++ EG + ++F  ++++    T+
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            +  L   IH    K   D +  V T+L+D Y+  G +  A  VFDG+  K+ V+W  MV
Sbjct: 162 DAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
             + +N     A+     M    F P+   L S L +   LS +   + +H  ++K    
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYD 281

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
               +  AL++ Y+KCG I  A   F  +   D++ W+ +I  YA    ++++ E+F +M
Sbjct: 282 TEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRM 341

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +   V P+  +   VL AC++   +  G +  NL I
Sbjct: 342 MRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAI 377



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 6/230 (2%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           S    +S  L+  A    ++   Q+HS I K    N   + N ++  Y KC    D  K+
Sbjct: 449 STQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKV 508

Query: 121 FDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI 178
           F+ +   ++V+WN++IS     G   N    F RM   +++ + +TF SLL  C     +
Sbjct: 509 FESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLV 568

Query: 179 EVGRRL-HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV- 235
             G  L +S ++      +    + +V L G+ G + DA +   ++      ++W  ++ 
Sbjct: 569 NQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLS 628

Query: 236 SCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
           SC     +  G  A   ++ +E   +  Y   S++  + G L    L R+
Sbjct: 629 SCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRK 678


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 302/583 (51%), Gaps = 68/583 (11%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GK +  H++K+G  + + +QN ++++Y  C    D  K+FD   V ++V+WN        
Sbjct: 145 GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWN-------- 196

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                                    S+L   V   ++E  + ++  + +     N   S+
Sbjct: 197 -------------------------SMLAGYVLVGNVEEAKDVYDRMPE----RNVIASN 227

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           +++ L+GK G VE+A ++F+E+  +DLV W+ ++SCY  N + + A+ +F  M   G+  
Sbjct: 228 SMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMV 287

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD-------------------------- 295
           D     S++++C  L     G+ +HGLV+K   +                          
Sbjct: 288 DEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLF 347

Query: 296 -----LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
                LD +   S++  Y K G I+ A  +FD M  K+ VSW+ M+ G+ Q     E + 
Sbjct: 348 SESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLV 407

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L ++M      PDE  L S++S+C  L+   + + +HAY  KNG++  + +   LIN Y 
Sbjct: 408 LFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYM 467

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G +  AL+ F  ++E  + TW ++I   A +GL  +S++ F +M  H V P+ I F+ 
Sbjct: 468 KLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVA 527

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL AC H GLV EG R+FN MI ++ I P+ +HY C+ DLLGR G+L EA +L+ SMP+ 
Sbjct: 528 VLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMA 587

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P   T GA +GACK +G     +    KL+EL P       L+SN+YAS+  W DV  +R
Sbjct: 588 PDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVR 647

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            MMR +   K PGCS IE  G +H F++ D++HPQ  H+  ML
Sbjct: 648 GMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHML 690



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 95/406 (23%)

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE--DARRVFDEVLCRDLVLW 231
           +  +I+   ++ S ++  GF  + F +S L+    +  F+    + ++F  +   +  + 
Sbjct: 35  KCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFIC 94

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N M+  Y        AI V+  M    +  D +T+  L  SC    +   G+ I   V+K
Sbjct: 95  NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLK 154

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG------------- 338
             FD DV +  +L++MYA  GN+ DA +VFDG +  ++VSWN+M+ G             
Sbjct: 155 VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDV 214

Query: 339 ------------------FGQNGDGREAVKLLRDMLQGSFCP------------------ 362
                             FG+ G+  EA KL  +M Q                       
Sbjct: 215 YDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEAL 274

Query: 363 -------------DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
                        DEV + S+LS+C  L +    + VH   +K G++ +++++NALI+ Y
Sbjct: 275 ILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMY 334

Query: 410 S-------------------------------KCGSIAGALQCFGSVKEPDLVTWTSIIG 438
           S                               KCG I  A   F S+ + D V+W+++I 
Sbjct: 335 SSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMIS 394

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
            YA      E++ +F++M     +PD    + V+SAC+H   + +G
Sbjct: 395 GYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG 440



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNG--NIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           QI   +I   F  D   A+ L+    +    NI+ + ++F  +   N    NTM+ G+ Q
Sbjct: 44  QILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQ 103

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
                +A+ + + ML+ +   D  T   +  SC       + + +  + +K G  + + I
Sbjct: 104 RNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYI 163

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
           +N LIN Y+ CG+++ A + F      D+V+W S++  Y   G  +E+ +V+++M    V
Sbjct: 164 QNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNV 223

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
               IA   ++      G V E  + FN M
Sbjct: 224 ----IASNSMIVLFGKKGNVEEACKLFNEM 249



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 38/278 (13%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E T    +     +        L QGK +H++I K GL   + L   ++++Y+K    +D
Sbjct: 415 EGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVED 474

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
             ++F  +  + + TWN LI G+   G        F  M    V  + ITF ++L AC  
Sbjct: 475 ALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRH 534

Query: 175 ADDIEVG-RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
              ++ G R  +S I +   G N      +VDL G+ G +++A  + + +          
Sbjct: 535 MGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESM---------- 584

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
                                    M  D  T+ +L+ +C   G ++ G +I   +++  
Sbjct: 585 ------------------------PMAPDVSTWGALLGACKKYGDNETGERIGRKLVELH 620

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
            D D      L ++YA  GN  D   V   M    VV 
Sbjct: 621 PDHDGF-NVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 297/545 (54%), Gaps = 4/545 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           ++ + +  K   L  G Q+HS I+KLG      +   ++ +Y KC +  D  K+FDEM  
Sbjct: 72  TKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSC 131

Query: 127 RNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++VTWN+L++G +  G  +     F  ML   +     + +  L  C Q    ++G +L
Sbjct: 132 PSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQL 191

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  LK+ F  N  V + L+D+Y KC  ++D+RRVFD +L +++  W  M+S YA N L 
Sbjct: 192 HAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLP 251

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +   M    +K +  T++SL++S          +QIH  +I + ++ +  +A +L
Sbjct: 252 HEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTL 311

Query: 305 VDMYAKN-GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           V  Y++  G+++D  +V   +   + +SWN ++ GF   G G EA++    M +  F  D
Sbjct: 312 VTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVD 371

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  SI  + G  S   E +Q+H    K G    LS++N L++ Y++ G+I  +   F 
Sbjct: 372 FFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFS 431

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E DL++W S++   A+HG  +E+I++FEKM    ++PD+ +FL VL+ACSH GL+ +
Sbjct: 432 MMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDK 491

Query: 484 GLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           GL YF LM +   + P   EHY  L DL GR G L EA   + S+PIEP      A + A
Sbjct: 492 GLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSA 551

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C +HG+  +A   A+KLLEL P  P  Y ++SN    +  W D A +R++M +    K P
Sbjct: 552 CLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEP 611

Query: 603 GCSWI 607
           G SW+
Sbjct: 612 GFSWM 616



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%)

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++ L  +L+    P    L   +S C   ++     QVH+  IK G      I  AL++ 
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KC SI+ A + F  +  P +VTW S++  Y   G    ++ +F +ML   + P   + 
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 469 LEVLSACSH 477
              L  CS 
Sbjct: 173 SGGLVGCSQ 181


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 311/581 (53%), Gaps = 20/581 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMK----LGLCNK-------LSLQNQVLHVYVKC 111
           ++ +S  L    + G L+ G  LH+ ++K      LC         L   N ++ +Y +C
Sbjct: 11  YARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYARC 70

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL-DHITFNSLLR 170
              +D  ++FDEMRVR+ V+WN+LI+      G+    FRRML  + R  D  TF ++L 
Sbjct: 71  GRREDAARVFDEMRVRDAVSWNSLIAASRG-AGDALALFRRMLRSDARACDRATFTTVLS 129

Query: 171 ACVQAD--DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
            C +A    +     +H  ++  GF     V +ALV  Y +CG    A RVF  +  +++
Sbjct: 130 ECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNV 189

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           + W  M+S  A   L   + ++F  M +  +  +  T+S  + +C    +++ G+Q+HGL
Sbjct: 190 ITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCTLLACARSLAAREGQQVHGL 248

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V+K  F+ D+ V + L+D+Y+K G ++DA  VF      + V    ++VGF QNG   +A
Sbjct: 249 VVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKA 308

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENALI 406
            +L  +M+      DE T++++L + G+ +     +Q+HA  IK   GV  ++   N L+
Sbjct: 309 FELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYVC--NGLV 366

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           N YSKCG +  ++Q F  +   + V+W SII A+A HG   E  ++FE M +   +P  +
Sbjct: 367 NMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDV 426

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            FL +L ACSH G   +GL   N M S Y +LP  EHY C+ D+LGR GLL +A   +  
Sbjct: 427 TFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIED 486

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
            P    +    A +GAC  HG+  + K AAEKLL L+PS    Y L+SN+Y+SE  W D 
Sbjct: 487 GPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDR 546

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
           A++ K M +    K  G SWIE+  E+H+FV    SHP + 
Sbjct: 547 AKVMKRMSEMGLRKDTGKSWIELEKEVHSFVVRSTSHPNSA 587



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 143/285 (50%), Gaps = 31/285 (10%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDL--------DVLVA-TSLVDMYAK 310
           +Y  FS L+ SCG  G  +LG  +H  V+K    F L         VLVA  +LV MYA+
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYAR 69

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLAS 369
            G  +DA RVFD M  ++ VSWN+++      GD   A+ L R ML+  +   D  T  +
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRATFTT 126

Query: 370 ILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +LS C   G+ S+      VH   +  G +A + + NAL+ AY +CGS A A + F  + 
Sbjct: 127 VLSECARAGAASLPA-CAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMA 185

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E +++TWT++I   A   L KES  +F +M+   V  ++  +   L AC+      EG +
Sbjct: 186 EKNVITWTAMISGMARAELYKESFSLFGQMI-RTVDANNATYSCTLLACARSLAAREGQQ 244

Query: 487 YFNLMI-----SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
              L++     +D H+       + L D+  + GL+ +A  +  S
Sbjct: 245 VHGLVVKAGFEADLHV------ESGLMDVYSKCGLMEDALTVFRS 283



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 168/331 (50%), Gaps = 10/331 (3%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G +  +  + ++ YS  L   A+    ++G+Q+H  ++K G    L +++ ++ VY KC 
Sbjct: 213 GQMIRTVDANNATYSCTLLACARSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCG 272

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLR 170
             +D   +F   R  + V    ++ G    G     +  F  M+     +D  T +++L 
Sbjct: 273 LMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLG 332

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           A   +    +G+++H+ ++K  FG+N +V + LV++Y KCG + ++ +VFDE+  ++ V 
Sbjct: 333 AFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVS 392

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN +++ +A +  G     +F  M+ +G K    TF SL+++C  +GS+K G +I   + 
Sbjct: 393 WNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMS 452

Query: 291 KQSFDLDVLVATS-LVDMYAKNGNIDDACR-VFDGMTAKNVVSWNTMVVGFGQNGD---G 345
            Q   L  +   + +VDM  + G +DDA   + DG    + + W  ++     +G+   G
Sbjct: 453 SQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALMGACSFHGNSEVG 512

Query: 346 REAV-KLLRDMLQGSFCPDEVTLASILSSCG 375
           + A  KLL  +L  S     V L++I SS G
Sbjct: 513 KHAAEKLL--LLDPSCTAAYVLLSNIYSSEG 541


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 285/472 (60%), Gaps = 4/472 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +++LL AC+    +  G+R+H+ ++K  +    ++ + L+  YGKC  +EDAR+V DE+ 
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 114

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
            +++V W  M+S Y+       A+ VF  +MR +G K + FTF++++ SC       LG+
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG-KPNEFTFATVLTSCIRASGLGLGK 173

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIHGL++K ++D  + V +SL+DMYAK G I +A  +F+ +  ++VVS   ++ G+ Q G
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLG 233

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+++   +      P+ VT AS+L++   L++    +Q H + ++  +  +  ++N
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 293

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VR 462
           +LI+ YSKCG+++ A + F ++ E   ++W +++  Y+ HGL +E +E+F  M     V+
Sbjct: 294 SLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVK 353

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMIS-DYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           PD++  L VLS CSHG +   GL  F+ M++ +Y   P +EHY C+ D+LGR G + EA+
Sbjct: 354 PDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAF 413

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           + +  MP +P +  LG+ +GAC+VH S+ + +    +L+E+EP    NY ++SN+YAS  
Sbjct: 414 EFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAG 473

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            W DV  +R MM      K PG SWI+    +H F ++DR+HP+   + A +
Sbjct: 474 RWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKM 525



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 145/279 (51%), Gaps = 9/279 (3%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G +  +  + +L+N+C    + + G+++H  +IK  +     + T L+  Y K   
Sbjct: 43  MAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 102

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           ++DA +V D M  KNVVSW  M+  + Q G   EA+ +  +M++    P+E T A++L+S
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C   S     +Q+H   +K    + + + ++L++ Y+K G I  A + F  + E D+V+ 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR----YFN 489
           T+II  YA  GL +E++E+F ++ S  + P+ + +  +L+A S   L+  G +       
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
             +  Y +L +S     L D+  + G L  A  L  +MP
Sbjct: 283 RELPFYAVLQNS-----LIDMYSKCGNLSYARRLFDNMP 316



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 8/217 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   +    L  GKQ H H+++  L     LQN ++ +Y KC       +LFD M 
Sbjct: 257 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP 316

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGR 182
            R  ++WN ++ G      G  V   FR M  +  V+ D +T  ++L  C      + G 
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376

Query: 183 RLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDL--VLWNVMVSCY 238
            +   ++   +G          +VD+ G+ G +++A      +  +    VL +++ +C 
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 436

Query: 239 ALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
               +  G      L+ +E    G+Y   S+L  S G
Sbjct: 437 VHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAG 473


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 307/575 (53%), Gaps = 6/575 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G+++H+H+++ G   ++ + N ++ +Y KC       K+FD M V + ++WN +I+G 
Sbjct: 206 RMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGH 265

Query: 140 INCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G        F  ML D V+ + +T  S+  A     D+   + +H   +K GF  + 
Sbjct: 266 FENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDV 325

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
              ++L+ +Y   G +  AR VF  +  RD + W  M+S Y  N   D A+ V+ LM + 
Sbjct: 326 AFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVN 385

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
            +  D  T +S + +C  LGS  +G ++H L   + F   ++V  ++++MYAK+  ID A
Sbjct: 386 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKA 445

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             VF  M  K+VVSW++M+ GF  N    EA+   R ML     P+ VT  + L++C + 
Sbjct: 446 IEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAAT 504

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 +++HA+ ++ G++    + NALI+ Y KCG    A   F +    D+V+W  +I
Sbjct: 505 GALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 564

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             +  HG    ++  F +M+     PD + F+ +L ACS GG+VSEG   F+ M   Y I
Sbjct: 565 AGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSI 624

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
           +P+ +HY C+ DLL R G L EAY+ +  MPI P +   GA +  C++H  + L + AA+
Sbjct: 625 VPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAK 684

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            +L LEP+    + L+ ++YA    W  +AR+RK MR+       GCSW+E+ G +H F+
Sbjct: 685 YVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFL 744

Query: 618 SSDRSHPQAVHMYAMLCTVFGLMEENN---VSGHC 649
           + D SHPQ   +  +L  ++  M+ +    V  HC
Sbjct: 745 TDDESHPQIREINTVLEGIYERMKASGYAPVESHC 779



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           L L N +L + V+        ++F +M  R++ +WN ++ G    G        + RM+ 
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             VR D  TF  +LR+C    D  +GR +H+ +L+ GFG    V +AL+ +Y KCG V  
Sbjct: 183 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMA 242

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D + WN M++ +  N   +  + +F  M  + ++ +  T +S+  + G 
Sbjct: 243 ARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGL 302

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L      +++HGL +K+ F  DV    SL+ MYA  G +  A  VF  M  ++ ++W  M
Sbjct: 303 LSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAM 362

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL---ASILSSCGSLSISCETRQVHAYAIK 392
           + G+ +NG   +A+++   M   +  PD++T+    +  +  GSL +     ++H  A  
Sbjct: 363 ISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGV---KLHELAES 419

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G  +++ + NA++  Y+K   I  A++ F  + E D+V+W+S+I  + F+  + E++  
Sbjct: 420 KGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYY 479

Query: 453 FEKMLSHAVRPDSIAFL 469
           F  ML+  V+P+S+ F+
Sbjct: 480 FRHMLAD-VKPNSVTFI 495



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 171/322 (53%), Gaps = 13/322 (4%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           LRAC  ADD     R   F L++G        +A++ +  + G    A RVF ++  RD+
Sbjct: 108 LRACAHADD-----RHAWFGLRLG--------NAMLSMLVRFGETWHAWRVFAKMPERDV 154

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
             WNVMV  Y  + L D A+ +++ M   G++ D +TF  ++ SCG +   ++GR++H  
Sbjct: 155 FSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAH 214

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V++  F  +V V  +L+ MYAK G++  A +VFD MT  + +SWN M+ G  +NG+    
Sbjct: 215 VLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAG 274

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++L   ML     P+ +T+ S+  + G LS     +++H  A+K G    ++  N+LI  
Sbjct: 275 LELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQM 334

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y+  G +  A   F  +   D +TWT++I  Y  +G   +++EV+  M  + V PD I  
Sbjct: 335 YASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITI 394

Query: 469 LEVLSACSHGGLVSEGLRYFNL 490
              L+AC+  G +  G++   L
Sbjct: 395 ASALAACACLGSLDVGVKLHEL 416



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 5/266 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G +LH      G  + + + N +L +Y K K  D   ++F  M  +++V+W+++I
Sbjct: 405 GSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMI 464

Query: 137 SGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +G      N     YFR ML D V+ + +TF + L AC     +  G+ +H+ +L+ G  
Sbjct: 465 AGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIE 523

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
              ++ +AL+DLY KCG    A   F     +D+V WN+M++ +  +  GD A++ FN M
Sbjct: 524 YEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQM 583

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGN 313
              G   D  TF +L+ +C   G    G ++ H +  K S   ++     +VD+ ++ G 
Sbjct: 584 VKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQ 643

Query: 314 IDDACRVFDGMT-AKNVVSWNTMVVG 338
           + +A    + M    +   W  ++ G
Sbjct: 644 LTEAYNFINEMPITPDAAVWGALLNG 669


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 315/590 (53%), Gaps = 14/590 (2%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K G     KQ  S ++  GL +     + +L    K   +  +  LFD +    I  WNT
Sbjct: 17  KCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLL--LFDRLATPYIFLWNT 74

Query: 135 LISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +I G         V   + R+    V  D  TF  LL+A  +  + E   + ++ I+K G
Sbjct: 75  IIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIVKFG 133

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AI 248
              + FV ++LV  +  CG+V+ +RR+F E   +D+V W  +++     CL +G    A+
Sbjct: 134 LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN----GCLRNGRAVEAL 189

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDM 307
             F  MR  G++ D  T  S++ +   L     GR +HG  ++    + DV V ++LVDM
Sbjct: 190 ECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDM 249

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y+K G  DDA +VF+ M  +N+VSW  ++ G+ Q    +EA+K+ ++M+     P++ T+
Sbjct: 250 YSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTV 309

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            S L++C  L    + R +H Y  ++ +     +  AL++ YSKCG +  AL  F  +  
Sbjct: 310 TSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPA 369

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D+  WT++I   A  G +  S+ +F +M+   V+P+ + FL VLSAC+HGGLV EGL  
Sbjct: 370 KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLEL 429

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           F LMI DY + P+ +HY C+ DLLGR G L EA   + SMP+EP     GA    C +H 
Sbjct: 430 FRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHK 489

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +  L +     L++L+P     Y L++N+Y+  + W   A +R++M+     K PGCSWI
Sbjct: 490 AFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWI 549

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
           E+ G IH F++ D+SH +++++Y ML +V   ++    +   N+L   +D
Sbjct: 550 EVNGVIHEFIAFDKSHTESINVYMMLESVSAQLKLATYALDSNLLTFTID 599



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 7/174 (4%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHI--MKLGLCNKLSLQNQVLHVYVKCK 112
           I E      S  + AL   A+ G L QG+ LH ++   KLGL +KL     ++ +Y KC 
Sbjct: 298 IIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLG--TALVDMYSKCG 355

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLR 170
             D+   +F+++  +++  W  +I+G+   G  ++    F +M+   V+ + +TF  +L 
Sbjct: 356 CVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLS 415

Query: 171 ACVQADDIEVGRRLHSFIL-KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           AC     ++ G  L   ++       N      +VDL G+ G +E+A +  + +
Sbjct: 416 ACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM 469


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 302/570 (52%), Gaps = 11/570 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  +    L  G+ +H+H   +GL   L +   ++ +Y++C  F     +F +M +R++
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 130 VTWNTLISGIINCGGNVTPYFRRMLLD-----NVRLDHITFNSLLRACVQADDIEVGRRL 184
           V WN +++G  N G  +  +    LLD      +R +  T  SLL    Q   +  G  +
Sbjct: 166 VAWNAMLAGYANHG--MYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSV 223

Query: 185 HSFILKVGFGLN---CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           H++ L+     N     + +AL+D+Y KC  +  A RVF  +  R+ V W+ ++  + L 
Sbjct: 224 HAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLC 283

Query: 242 CLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                A  +F  M +EGM      + +S +  C +L   ++G Q+H L+ K     D+  
Sbjct: 284 DRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTA 343

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             SL+ MYAK G I++A  +FD +  K+ +S+  ++ G+ QNG   EA  + + M   + 
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNV 403

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD  T+ S++ +C  L+     R  H   I  G+    SI N+LI+ Y+KCG I  + Q
Sbjct: 404 QPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQ 463

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D+V+W ++I  Y  HGL KE+  +F  M +    PD + F+ +++ACSH GL
Sbjct: 464 VFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGL 523

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V+EG  +F+ M   Y ILP  EHY C+ DLL R G L EAY  + SMP++      GA +
Sbjct: 524 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALL 583

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
           GAC++H +I L K  +  + +L P    N+ L+SN++++   + + A +R + +     K
Sbjct: 584 GACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKK 643

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            PGCSWIEI G +H FV  D+SHP +  +Y
Sbjct: 644 SPGCSWIEINGSLHAFVGGDQSHPCSPDIY 673



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 193/374 (51%), Gaps = 7/374 (1%)

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            ++FD +   +   +N LI      G        +R ML   V  +  TF  +L+AC   
Sbjct: 53  RQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSAL 112

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
            D+  GR +H+    VG   + FVS+AL+DLY +C     A  VF ++  RD+V WN M+
Sbjct: 113 ADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAML 172

Query: 236 SCYALNCLGDGAIA-VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           + YA + +   AIA + ++    G++ +  T  SL+      G+   G  +H   ++   
Sbjct: 173 AGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYL 232

Query: 295 DLD---VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
           D +   VL+ T+L+DMYAK  ++  ACRVF GMT +N V+W+ ++ GF       EA  L
Sbjct: 233 DQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNL 292

Query: 352 LRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
            +DML    C     ++AS L  C SL+      Q+HA   K+G+ A L+  N+L++ Y+
Sbjct: 293 FKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYA 352

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G I  A   F  +   D +++ +++  Y  +G ++E+  VF+KM +  V+PD    + 
Sbjct: 353 KAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVS 412

Query: 471 VLSACSHGGLVSEG 484
           ++ ACSH   +  G
Sbjct: 413 LIPACSHLAALQHG 426



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           + AL+V A    L+ G QLH+ + K G+   L+  N +L +Y K    ++   LFDE+ +
Sbjct: 310 ASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAI 369

Query: 127 RNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ +++  L+SG +  G     +  F++M   NV+ D  T  SL+ AC     ++ GR  
Sbjct: 370 KDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCS 429

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H  ++  G  L   + ++L+D+Y KCG ++ +R+VFD++  RD+V WN M++ Y ++ LG
Sbjct: 430 HGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLG 489

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV-ATS 303
             A  +F  M+ +G + D  TF  L+ +C   G    G+     +  +   L  +     
Sbjct: 490 KEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 549

Query: 304 LVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVG--FGQNGDGREAVKLLRDMLQGSF 360
           +VD+ A+ G +D+A +    M  K +V  W  ++      +N D  + V  +   L    
Sbjct: 550 MVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEG 609

Query: 361 CPDEVTLASILSSCGSLSISCETRQVH 387
             + V L++I S+ G    + E R + 
Sbjct: 610 TGNFVLLSNIFSAAGRFDEAAEVRIIQ 636



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D   +N ++  Y+       AI ++  M    +  + +TF  ++ +C  
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSA 111

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L     GR IH          D+ V+T+L+D+Y +      A  VF  M  ++VV+WN M
Sbjct: 112 LADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAM 171

Query: 336 VVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-- 392
           + G+  +G    A+  L DM  +G   P+  TL S+L          +   VHAY ++  
Sbjct: 172 LAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAY 231

Query: 393 -NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
            +  +  + I  AL++ Y+KC  +  A + F  +   + VTW+++IG +       E+  
Sbjct: 232 LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFN 291

Query: 452 VFEKML 457
           +F+ ML
Sbjct: 292 LFKDML 297



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 8/242 (3%)

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           ++ +   G +  A +VFD + A +  ++N ++  +   G    A+ L R ML     P++
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T   +L +C +L+  C  R +HA+A   G+   L +  ALI+ Y +C     A   F  
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDSIAFLEVLSACSHGGLVSE 483
           +   D+V W +++  YA HG+   +I     M     +RP++   + +L   +  G + +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 484 GLRYFNLMISDYHILPDSEHY----TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           G       +  Y  L  +E      T L D+  +   LV A  +   M +     T  A 
Sbjct: 220 GTSVHAYCLRAY--LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSAL 276

Query: 540 IG 541
           IG
Sbjct: 277 IG 278


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/570 (33%), Positives = 305/570 (53%), Gaps = 13/570 (2%)

Query: 75  KFGFLQQGKQLHSHIMKL--------GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  FLQ   +L  HI ++         L N  S+   ++    +        K+FDE+  
Sbjct: 19  RIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQ 78

Query: 127 RNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           R +  +N++I  + + G N   V   + +M+ + ++ D  TF   ++AC+    +E G  
Sbjct: 79  RGVSVYNSMIV-VYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEA 137

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +    +  G+  + FV S++++LY KCG +++A  +F ++  RD++ W  MV+ +A    
Sbjct: 138 VWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGK 197

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+  +  M+ EG   D      L+ + G LG +K+GR +HG + +    ++V+V TS
Sbjct: 198 SLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETS 257

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LVDMYAK G I+ A RVF  M  K  VSW +++ GF QNG   +A + + +M    F PD
Sbjct: 258 LVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPD 317

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VTL  +L +C  +      R VH Y +K  V   ++   AL++ YSKCG+++ + + F 
Sbjct: 318 LVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVT-ATALMDMYSKCGALSSSREIFE 376

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            V   DLV W ++I  Y  HG  +E + +F KM    + PD   F  +LSA SH GLV +
Sbjct: 377 HVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQ 436

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G  +F++MI+ Y I P  +HY CL DLL R G + EA D++ S  ++       A +  C
Sbjct: 437 GQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGC 496

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
             H ++ +   AA K+L+L P       LVSN +A+   W +VA++RK+MR+    KVPG
Sbjct: 497 INHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPG 556

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            S IE+ GE+ TF+  D SH +  HM  +L
Sbjct: 557 YSAIEVNGELRTFLMEDLSHHEHYHMLQVL 586



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 218/428 (50%), Gaps = 17/428 (3%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I E      S ++  +K       L++G+ +    +  G  N + + + VL++Y+KC   
Sbjct: 108 IAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKM 167

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRAC 172
           D+ E LF +M  R+++ W T+++G    G ++    ++R M  +    D +    LL+A 
Sbjct: 168 DEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQAS 227

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
               D ++GR +H ++ + G  +N  V ++LVD+Y K GF+E A RVF  ++ +  V W 
Sbjct: 228 GDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWG 287

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            ++S +A N L + A      M+  G + D  T   ++ +C  +GS K GR +H  ++K+
Sbjct: 288 SLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKR 347

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
              LD + AT+L+DMY+K G +  +  +F+ +  K++V WNTM+  +G +G+G+E V L 
Sbjct: 348 HV-LDRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLF 406

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALIN 407
             M + +  PD  T AS+LS+     +  + +      ++ Y I+   + ++     LI+
Sbjct: 407 LKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYV----CLID 462

Query: 408 AYSKCGSIAGALQCFGSVK-EPDLVTWTSII-GAYAFHGLSKESIEVFEKMLSHAVRPDS 465
             ++ G +  AL    S K +  L  W +++ G      LS   I    K+L   + PDS
Sbjct: 463 LLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAA-NKILQ--LNPDS 519

Query: 466 IAFLEVLS 473
           I    ++S
Sbjct: 520 IGIQTLVS 527


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 316/568 (55%), Gaps = 38/568 (6%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
           FGF     QLHS I+K GL  ++ + N ++ +Y +C       +L +  R          
Sbjct: 194 FGF-----QLHSRILKCGLDCEVFVGNALITMYSRCC------RLVEARRG--------- 233

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                N G      F  ML + ++LDH++F   + AC    + E+GR++HS  +K+G+  
Sbjct: 234 -----NSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDT 288

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +  V + L+  Y KC  +EDA+ VF+ ++ R++V W  M+S        + A ++FN MR
Sbjct: 289 HVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISE-----EDATSLFNEMR 343

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            +G+  +  TF  L+++       + G+ IHG+ +K SF  ++ V+ SL+ MYAK  ++ 
Sbjct: 344 RDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMS 403

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           D+ +VF+ +  + ++SWN+++ G+ QNG  +EA++     L  S  P+E T  S+LSS  
Sbjct: 404 DSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESR-PNEFTFGSVLSSIA 462

Query: 376 SL-SISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           S  +IS    Q  H++ +K G+     + +AL++ Y+K GSI  +L  F      + V W
Sbjct: 463 SAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAW 522

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T+II A+A HG  +  + +F+ M    V+PDSI FL V++AC   G+V  G + FN M+ 
Sbjct: 523 TAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVK 582

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           D+ I P  EHY+ + D+LGR G L EA + +  +P       L + +GAC++HG++ +AK
Sbjct: 583 DHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAK 642

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE- 612
             A+ L+E+EP    +Y L+SN+YA +  W  VA++RK MR+    K  G SW+++    
Sbjct: 643 RVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDVGDAD 702

Query: 613 ----IHTFVSSDRSHPQAVHMYAMLCTV 636
               +H F S D+ HPQ+  +Y M  T+
Sbjct: 703 GSLYLHGFSSDDKFHPQSEEIYRMAETL 730



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 243/505 (48%), Gaps = 40/505 (7%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G Q+H+  +  G  + +++ N ++++Y K   FD    +F+ +   +IV+WNT++SG   
Sbjct: 97  GCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGF-Q 155

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
              +   +  RM    V  D +T  ++L  C   +    G +LHS ILK G     FV +
Sbjct: 156 RSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGN 215

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+ +Y +C  + +ARR                         G  AI VF  M  EGMK 
Sbjct: 216 ALITMYSRCCRLVEARR----------------------GNSGLEAILVFLEMLKEGMKL 253

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D+ +F+  +++CG     +LGRQIH L +K  +D  V V   L+  Y+K  +I+DA  VF
Sbjct: 254 DHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVF 313

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           + +  +NVVSW TM+     +    +A  L  +M +    P++VT   ++ +    ++  
Sbjct: 314 ESIIDRNVVSWTTMI-----SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVE 368

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
           E + +H   +K    + L++ N+LI  Y+K  S++ +++ F  +   ++++W S+I  YA
Sbjct: 369 EGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYA 428

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-- 499
            +GL +E+++ F   L  + RP+   F  VLS+ +    +S  +R+     S  HIL   
Sbjct: 429 QNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASAEAIS--MRHGQRCHS--HILKLG 483

Query: 500 ---DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
              +    + L D+  + G + E+  + +  P++       A I A   HG    A    
Sbjct: 484 LNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEV-AWTAIISAHARHGDYE-AVMNL 541

Query: 557 EKLLELEPSKPVNYALVSNVYASER 581
            K +E E  KP +   ++ + A  R
Sbjct: 542 FKDMEREGVKPDSITFLAVITACGR 566



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 198/386 (51%), Gaps = 8/386 (2%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  ++ A+         + G+Q+HS  +K+G    + + N ++  Y KC+  +D + +F+
Sbjct: 255 HVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFE 314

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            +  RN+V+W T+IS       + T  F  M  D V  + +TF  L+ A    + +E G+
Sbjct: 315 SIIDRNVVSWTTMIS---ISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQ 371

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            +H   +K  F     VS++L+ +Y K   + D+ +VF+E+  R+++ WN ++S YA N 
Sbjct: 372 MIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNG 431

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG--SSKLGRQIHGLVIKQSFDLDVLV 300
           L   A+  F L  L   + + FTF S+++S  +    S + G++ H  ++K   + + +V
Sbjct: 432 LWQEALQTF-LSALMESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIV 490

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
           +++L+DMYAK G+I ++  VF     KN V+W  ++    ++GD    + L +DM +   
Sbjct: 491 SSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGV 550

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGAL 419
            PD +T  +++++CG   +     Q+    +K+  ++      +++++   + G +  A 
Sbjct: 551 KPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAE 610

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFHG 444
           +  G +     L    S++GA   HG
Sbjct: 611 EFVGQIPGGAGLSVLQSLLGACRIHG 636



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 152/296 (51%), Gaps = 21/296 (7%)

Query: 32  TTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMK 91
           TT+ +  + D + L +++R  G            ++  +K       +++G+ +H   +K
Sbjct: 325 TTMISISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMK-----NLVEEGQMIHGVCVK 379

Query: 92  LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPY 149
               ++L++ N ++ +Y K ++  D  K+F+E+  R I++WN+LISG    G        
Sbjct: 380 TSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQT 439

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEV--GRRLHSFILKVGFGLNCFVSSALVDLY 207
           F   L+++ R +  TF S+L +   A+ I +  G+R HS ILK+G   N  VSSAL+D+Y
Sbjct: 440 FLSALMES-RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMY 498

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
            K G + ++  VF E   ++ V W  ++S +A +   +  + +F  M  EG+K D  TF 
Sbjct: 499 AKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFL 558

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA------TSLVDMYAKNGNIDDA 317
           +++ +CG  G    G Q+   ++K     D L+       +S+VDM  + G + +A
Sbjct: 559 AVITACGRKGMVDTGYQLFNSMVK-----DHLIEPSPEHYSSMVDMLGRAGRLKEA 609



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 30/239 (12%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T + ++ +C   G SKLG QIH   I   F   V V  SL++MY K G  D A  VF
Sbjct: 79  DQVTVAIVLKAC--CGDSKLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVF 136

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           + +   ++VSWNT++ GF ++ D   A+     M       D VT  ++L+ C       
Sbjct: 137 ENLNNPDIVSWNTVLSGFQRSDD---ALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFI 193

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+  +K G+   + + NALI  YS+C  +  A +                     
Sbjct: 194 FGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARR--------------------G 233

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS---DYHI 497
             GL  E+I VF +ML   ++ D ++F   +SAC HG     G +  +L +    D H+
Sbjct: 234 NSGL--EAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHV 290


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 206/669 (30%), Positives = 329/669 (49%), Gaps = 76/669 (11%)

Query: 17  RPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKF 76
           +P S L P  +Q     I        S  +   +N    H++ H  H  ++    +    
Sbjct: 8   KPTSLLLPLTFQKLKQPIPPP-----STFTKTPQNPSPQHQNKHQKHPSFTPNNHLC--- 59

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKL-FDEMRVRNIVTWNTL 135
             L Q +QLH+HI +                      F+  +++ F           NT 
Sbjct: 60  --LDQTQQLHAHITR--------------------THFNHAQQVSFSPFESHPRYALNTY 97

Query: 136 ISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                        Y R++   ++ +D     S+L+AC Q     +G+ +H F +K G   
Sbjct: 98  T------------YMRKL---DIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVS 142

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL--------------- 240
           + FV +AL+ +Y +CG +  AR +FD++  RD+V W+ M+  Y                 
Sbjct: 143 DVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTA 202

Query: 241 --------NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
                   N L +G   +F  M  E +  +  T  SL+ SCG +G+ +LG+++H  +++ 
Sbjct: 203 MIAGYIRCNDLEEGE-RLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN 261

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            F + + +AT+LVDMY K G I  A  +FD M  K+V++W  M+  + Q      A +L 
Sbjct: 262 GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321

Query: 353 RDMLQGSFCPDEVTLASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
             M      P+E+T+ S+LS C   G+L +    +  HAY  K GV+  + ++ ALI+ Y
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMG---KWFHAYIDKQGVEVDVILKTALIDMY 378

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           +KCG I+GA + F    + D+ TW  ++  Y  HG  ++++++F +M +  V+P+ I F+
Sbjct: 379 AKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFI 438

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
             L ACSH GLV EG   F  MI D+ ++P  EHY C+ DLLGR GLL EAY ++ SMP+
Sbjct: 439 GALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV 498

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
            P     GA + ACK+H +  + + AA +LL LEP       L+SN+YA+   W DVA +
Sbjct: 499 TPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGM 558

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHC 649
           RK ++D    K PG S IE+ G +H F   D +HP    +  ML  +   ++E       
Sbjct: 559 RKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDT 618

Query: 650 NVLDKEMDE 658
           +V+   +DE
Sbjct: 619 SVVLHNIDE 627


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 303/537 (56%), Gaps = 9/537 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +HE         S  L+       L+ GK +H+H+++ GL   L +   ++++Y KC   
Sbjct: 410 LHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDL-VGISLVNMYAKCGTV 468

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY-FRRMLLDNVRLDHITFNSLLRACV 173
            +  K+FD +  R+ + WN++I+       +   + FR M  + V  D ITF ++L ACV
Sbjct: 469 GEARKVFDRINNRSRILWNSMITAYQEKDPHEALHLFREMQPEGVSPDRITFMTVLNACV 528

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
            A D+E GR +H+ I+  GF  +  V++AL ++Y KCG + +AR VFD ++ RD+V WN 
Sbjct: 529 NAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNN 588

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           M++ Y     G+GAI++   M+LEGM+ D  TF+SL+N+C        GRQIH  + +  
Sbjct: 589 MIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESR 648

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA------KNVVSWNTMVVGFGQNGDGRE 347
            + D+++ T L+ MYA  G++++A  +FD + +      +++  W +M+  + Q+G+ R+
Sbjct: 649 LENDIVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRK 708

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A++L   M       D VT  S+L++C  LS   + + +HA  ++ G+   +++ N+++ 
Sbjct: 709 ALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVF 768

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y KCGS   A   F   K  D+  WT++I +YA HG  ++++ +F ++    +   ++ 
Sbjct: 769 MYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLT 828

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           F+ +LSACSH GL+ EG  +F  M ++  I P+ EH++CL DLL R G L  A + L+ M
Sbjct: 829 FVAMLSACSHVGLIEEGCEFFASM-AELGIEPNMEHHSCLVDLLARAGHLHTAEEFLSRM 887

Query: 528 PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
           P+   +  L A + AC+VHG +  A+  AEKL  L+P     Y  +SN+    R +F
Sbjct: 888 PVAANTIVLTALLAACRVHGDVERARRVAEKLEALDPESEAPYVTLSNIEMVLRFFF 944



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 269/500 (53%), Gaps = 19/500 (3%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME-KLFDEMRVRNIVTWNTLI 136
            L+QG+Q+H+ +++  L + + + N +L +Y +C++++D   + F  M+ R++V+W  +I
Sbjct: 126 LLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMI 185

Query: 137 SGIINCGGNVT---PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
            G  +  G  +     FR MLL+    + +TF S+L  C     +E GR++H+ +++   
Sbjct: 186 -GAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSL 244

Query: 194 G--LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
              L+  V +  +++Y KCG ++ A + F  +  RD+V W VM+  Y+ +     ++ +F
Sbjct: 245 ESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLF 304

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M LEG   +  TF S+++ C      + GRQIH LV++ S +  V+VA SL+ MY++ 
Sbjct: 305 REMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRC 364

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFG-QNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            + +D+  +FD M+ ++ VSW+T+++    ++   R+A+ L R ML     P  + L+ +
Sbjct: 365 RSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMV 424

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           L +CGSL+     + VHA+ I++G++  L +  +L+N Y+KCG++  A + F  +     
Sbjct: 425 LEACGSLAELKGGKLVHAHVIESGLEGDL-VGISLVNMYAKCGTVGEARKVFDRINNRSR 483

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           + W S+I AY       E++ +F +M    V PD I F+ VL+AC +   +  G R  + 
Sbjct: 484 ILWNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENG-RTIHT 541

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHG 547
            I D     D    T L ++  + G L EA  +  SM    +   ++ + A++      G
Sbjct: 542 RIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEG 601

Query: 548 SIGLAKWAAEKLLELEPSKP 567
           +I L  WA    ++LE  +P
Sbjct: 602 AISLC-WA----MQLEGMRP 616



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 222/413 (53%), Gaps = 8/413 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L    K G L++GK +   +    L   + ++N  +++YVKC   D   + F  M+ R++
Sbjct: 17  LTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQTFARMKRRDV 76

Query: 130 VTWNTLISGIINCGGNVT---PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           V+W  +I G  +  G  +     FR MLL+    + +TF S+L  C     +E GR++H+
Sbjct: 77  VSWTVMI-GAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHA 135

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDAR-RVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            +++     +  V+++L+ +Y +C   ED+R + F  +  RD+V W VM+  Y+ +    
Sbjct: 136 LVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGKFS 195

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD--LDVLVATS 303
            +I +F  M LEG   +  TF S+++ C      + GRQIH LV++ S +  LD+ V   
Sbjct: 196 LSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNL 255

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            ++MY K G +D A + F  M  ++VVSW  M+  + Q+G    +++L R+ML     P+
Sbjct: 256 TINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPN 315

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VT  SILS C + S+  + RQ+HA  +++ +++ + + N+L+  YS+C S   +   F 
Sbjct: 316 SVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFD 375

Query: 424 SVKEPDLVTWTSIIGAYAFHGLS-KESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            +   D V+W++II A +      ++++ ++  ML   V P ++A   VL AC
Sbjct: 376 RMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEAC 428



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 188/335 (56%), Gaps = 3/335 (0%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D +   +LL AC +   +E G+ +   +      L+  V +  +++Y KCG ++ A + F
Sbjct: 9   DRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQTF 68

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +  RD+V W VM+  Y+ +     ++ +F  M LEG   +  TF S+++ C      +
Sbjct: 69  ARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLE 128

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA-CRVFDGMTAKNVVSWNTMVVGF 339
            GRQIH LV++ S +  V+VA SL+ MY++  + +D+  + F  M  ++VVSW  M+  +
Sbjct: 129 QGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAY 188

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            Q+G    +++L R+ML     P+ VT  SILS C + S+  + RQ+HA  +++ +++ L
Sbjct: 189 SQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHL 248

Query: 400 SIE--NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            I   N  IN Y KCG + GA+Q F  +K  D+V+WT +IGAY+  G    S+++F +ML
Sbjct: 249 DIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREML 308

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
                P+S+ F+ +LS C    L+ +G +   L++
Sbjct: 309 LEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV 343



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 134/240 (55%), Gaps = 1/240 (0%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G+  D     +L+ +C  LG+ + G+ I   +     +LD+ V    ++MY K G 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +D A + F  M  ++VVSW  M+  + Q+G    +++L R+ML     P+ VT  SILS 
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA-LQCFGSVKEPDLVT 432
           C + S+  + RQ+HA  +++ +++ + + N+L+  YS+C S   + +Q F  +K  D+V+
Sbjct: 121 CEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVS 180

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           WT +IGAY+  G    SI++F +ML     P+S+ F+ +LS C    L+ +G +   L++
Sbjct: 181 WTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV 240


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 323/584 (55%), Gaps = 18/584 (3%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN---KLSLQNQVLHVYVKCKAFD 115
            HS H+ Y+   +  A+   L +G+ LH H M L   N    L L N V+++Y KC + D
Sbjct: 60  VHSHHT-YAALFQACARRSSLPEGQALHRH-MFLHNPNSDFNLFLTNHVVNMYAKCGSLD 117

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACV 173
              ++FDEM  +NIV+W  L+SG    G +   +  FR ML+ + +     F S++ AC 
Sbjct: 118 YAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIWH-QPTEFAFASVISAC- 175

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK-CGFVEDARRVFDEVLCRDLVLWN 232
              D   GR++H+  LK  F    +V +AL+ +Y K CG  ++A  V++ +  R+LV WN
Sbjct: 176 -GGDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNLVSWN 234

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS-CGTLGSSKLGRQIHGLVIK 291
            M++ + +   G+ A+ +F+ M + G++ D  T  S+ +  CG     +   Q+  L IK
Sbjct: 235 SMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQLQCLTIK 294

Query: 292 QSFDLDVLVATSLVDMYAK-NGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAV 349
             F L + VAT+LV  Y+   G + D  R+F  +  + +VVSW  ++  F +  D ++A+
Sbjct: 295 TGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFAER-DPKKAL 353

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
            + R  L+    PD    + +L +C  L+       V ++ +K G +  + + NALI+A 
Sbjct: 354 VIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHAC 413

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           ++CGS+A + Q F  +   D V+W S++ AYA HG  KE++ +F +M     +PD   F+
Sbjct: 414 ARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQM---DAQPDGATFV 470

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            +LSACSH G+  EG + F  M +++ I+P  +HY C+ D+LGR G + EA +L+  MP+
Sbjct: 471 ALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPM 530

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           EP S    A +G+C+ HG   LAK AA KL EL+P+  + Y L+SN++ ++  + +   +
Sbjct: 531 EPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLMSNIFCTDGRFNEARLI 590

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           R+ M      K PG SWIE+  ++H F S  + HP+   + A L
Sbjct: 591 RREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARL 634


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/470 (37%), Positives = 278/470 (59%), Gaps = 1/470 (0%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            + + L+ C+Q D+   G+ LH  ILK G  L+ F  + L+++Y K  F+ DA ++FDE+
Sbjct: 40  AYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM 99

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R+ + +  ++  YA +     AI +F  +  E +  + FTF+S++ +C T+    LG 
Sbjct: 100 PERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP-NQFTFASVLQACATMEGLNLGN 158

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIH  VIK     DV V+ +L+D+YAK G ++++  +F     +N V+WNT++VG  Q G
Sbjct: 159 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLG 218

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           DG +A++L  +ML+      EVT +S L +C SL+      Q+H+  +K      + + N
Sbjct: 219 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN 278

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ALI+ Y+KCGSI  A   F  + + D V+W ++I  Y+ HGL +E++ +F+KM    V+P
Sbjct: 279 ALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKP 338

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D + F+ VLSAC++ GL+ +G  YF  MI D+ I P  EHYTC+  LLGR G L +A  L
Sbjct: 339 DKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKL 398

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  +P +P      A +GAC +H  I L + +A+++LE+EP     + L+SN+YA+ + W
Sbjct: 399 IDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRW 458

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            +VA +RK M+     K PG SWIE  G +H+F   D SHP+   +  ML
Sbjct: 459 DNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGML 508



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 221/407 (54%), Gaps = 8/407 (1%)

Query: 43  SVLSSQLRNS--GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL 100
           SV S++L     G +  S  ++H+ Y+ AL+   +     +GK LH  I+K G C  L  
Sbjct: 17  SVQSAKLTQEFVGHVSPSEFNSHA-YANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFA 75

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNV 158
            N +L++YVK     D  KLFDEM  RN +++ TLI G             F R L   V
Sbjct: 76  WNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR-LHREV 134

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
             +  TF S+L+AC   + + +G ++H  ++K+G   + FVS+AL+D+Y KCG +E++  
Sbjct: 135 LPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSME 194

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +F E   R+ V WN ++  +     G+ A+ +F  M    ++    T+SS + +C +L +
Sbjct: 195 LFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAA 254

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
            + G QIH L +K +FD D++V  +L+DMYAK G+I DA  VFD M  ++ VSWN M+ G
Sbjct: 255 LEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISG 314

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQA 397
           +  +G GREA+++   M +    PD++T   +LS+C +  +  + +      I++ G++ 
Sbjct: 315 YSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEP 374

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
            +     ++    + G +  A++    +  +P ++ W +++GA   H
Sbjct: 375 CIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 421


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/590 (35%), Positives = 307/590 (52%), Gaps = 43/590 (7%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM------EKLFDEMRVRNIVTWNTLI 136
           K LH+ I+  GL N    +   L   +   A DD       +++FD++   N   +N+LI
Sbjct: 5   KLLHAQIILHGLTN----ETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60

Query: 137 SGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
            G  N    +     FRRM+   +  +  T   +L+AC           +H   +K+G G
Sbjct: 61  RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
              FV +AL+ +Y  CG +  AR++FD++  + LV WN M+  YA       A  +F  M
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN- 313
           R  GM+ D FTF +L++ C       LGR +H  +      +D++V  +LVDMYAK GN 
Sbjct: 181 REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNL 240

Query: 314 ------------------------------IDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
                                         I+ A ++FD M  KNVVSWN+M+  + + G
Sbjct: 241 HSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREG 300

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
             REA+ L   M      PDE TL SIL++C  L      +++H Y + N     +++ N
Sbjct: 301 QYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYN 360

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           +LI+ Y+KCG +  AL  F  +   +LV+W  IIGA A HG   E+I++FE+M +    P
Sbjct: 361 SLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLP 420

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D I    +LSACSH GLV  GL YF+ M   Y +  + EHY C+ DLLGR GLL EA +L
Sbjct: 421 DEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIEL 480

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  MP++P     GA +GAC++HG++ + K   ++LLELEP     Y L+SN+Y   + W
Sbjct: 481 IGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRW 540

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            DV ++RK+M D    K    S IEI G I+ F+  D+ H  +  +YAML
Sbjct: 541 EDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAML 590



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 37/239 (15%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS- 137
           L  G+ +H  I   G+   + ++N ++ +Y KC      + +FD  + +N+V+W ++IS 
Sbjct: 205 LDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 264

Query: 138 ----GIINC---------GGNVTPY-------------------FRRMLLDNVRLDHITF 165
               G I           G NV  +                   F +M    V  D  T 
Sbjct: 265 YAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATL 324

Query: 166 NSLLRACVQADDIEVGRRLHSFIL--KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
            S+L AC Q  D+ +G+++H++IL  K  +G+  +  ++L+D+Y KCG V  A  +F E+
Sbjct: 325 VSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLY--NSLIDMYAKCGPVVTALDIFLEM 382

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
             ++LV WNV++   AL+  G  AI +F  M+ +G   D  T + L+++C   G   +G
Sbjct: 383 PGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 441



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 44/255 (17%)

Query: 45  LSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQV 104
           L +++RNS  + +      +     L   ++ G L  GK++H++I+       ++L N +
Sbjct: 308 LFNKMRNSRVVPD-----EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 362

Query: 105 LHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDH 162
           + +Y KC        +F EM  +N+V+WN +I  +    CG      F  M  D    D 
Sbjct: 363 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 422

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           IT   LL AC  +  +++G  L+ F                     + G +    R  + 
Sbjct: 423 ITLTGLLSACSHSGLVDMG--LYYF--------------------DRMGVIYRVPREIEH 460

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
             C        MV       L   AI +   M    MK D   + +L+ +C   G+ ++G
Sbjct: 461 YAC--------MVDLLGRGGLLGEAIELIGRMP---MKPDVVVWGALLGACRIHGNVEIG 509

Query: 283 RQIHGLVIKQSFDLD 297
           +QI    +KQ  +L+
Sbjct: 510 KQI----LKQLLELE 520


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/581 (34%), Positives = 312/581 (53%), Gaps = 20/581 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMK----LGLCNK-------LSLQNQVLHVYVKC 111
           ++ +S  L    + G L+ G  LH+ ++K      LC         L   N ++ +Y +C
Sbjct: 11  YARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARC 70

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL-DHITFNSLLR 170
              +D  ++FDEMRVR+ V+WN+LI+      G+    FRRML  + R  D  TF ++L 
Sbjct: 71  GRREDAARVFDEMRVRDAVSWNSLIAASRG-AGDALALFRRMLRSDARACDRATFTTVLS 129

Query: 171 ACVQAD--DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
            C +A    +     +H  ++  GF     V +ALV  Y +CG    A RVF  +  +++
Sbjct: 130 ECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNV 189

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           + W  M+S  A   L   + ++F  M +  +  +  T+S  + +C    +++ G+Q+HGL
Sbjct: 190 ITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCALLACARSLAAREGQQVHGL 248

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V+K  F+ D+ V + L+D+Y+K G ++DA  VF      + V    ++VGF QNG   +A
Sbjct: 249 VVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKA 308

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN--GVQAFLSIENALI 406
            +L  +M+      DE T++++L + G+ +     +Q+HA  IK   GV  ++   N L+
Sbjct: 309 FELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVC--NGLV 366

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           N YSKCG +  +++ F  +   + V+W SII A+A HG   E  ++FE M +   +P  +
Sbjct: 367 NMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDV 426

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            FL +L ACSH G   +GL   N M S Y +LP  EHY C+ D+LGR GLL +A   +  
Sbjct: 427 TFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIED 486

Query: 527 MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586
            P    +    A +GAC  HG+  + K+AAEKLL L+PS    Y L+SN+Y+SE  W D 
Sbjct: 487 GPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDR 546

Query: 587 ARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAV 627
           A++ K M +    K  G SWIE+  E+H+FV    SHP + 
Sbjct: 547 AKVMKRMSEMGLRKDTGKSWIELEKEVHSFVVRSTSHPNSA 587



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 31/285 (10%)

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDL--------DVLVA-TSLVDMYAK 310
           +Y  FS L+ SCG  G  +LG  +H  V+K    F L         VLVA  SLV MYA+
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYAR 69

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLAS 369
            G  +DA RVFD M  ++ VSWN+++      GD   A+ L R ML+  +   D  T  +
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRATFTT 126

Query: 370 ILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           +LS C   G+ S+      VH   +  G +A + + NAL+ AY +CGS A A + F  + 
Sbjct: 127 VLSECARAGAASLPA-CAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMA 185

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
           E +++TWT++I   A   L KES  +F +M+   V  ++  +   L AC+      EG +
Sbjct: 186 EKNVITWTAMISGMARAELYKESFSLFGQMI-RTVDANNATYSCALLACARSLAAREGQQ 244

Query: 487 YFNLMIS-----DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
              L++      D H+       + L D+  + GL+ +A  +  S
Sbjct: 245 VHGLVVKAGFEDDLHV------ESGLMDVYSKCGLMEDALTVFRS 283



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 168/331 (50%), Gaps = 10/331 (3%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G +  +  + ++ YS AL   A+    ++G+Q+H  ++K G  + L +++ ++ VY KC 
Sbjct: 213 GQMIRTVDANNATYSCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCG 272

Query: 113 AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLR 170
             +D   +F   R  + V    ++ G    G     +  F  M+     +D  T +++L 
Sbjct: 273 LMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLG 332

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           A   +    +G+++H+ ++K  FG+N +V + LV++Y KCG + ++ RVFDE+  ++ V 
Sbjct: 333 AFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVS 392

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN +++ +A +  G     +F  M+ +G K    TF SL+++C  +GS+K G +I   + 
Sbjct: 393 WNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMS 452

Query: 291 KQSFDLDVLVATS-LVDMYAKNGNIDDACR-VFDGMTAKNVVSWNTMVVGFGQNGDGR-- 346
            Q   L  +   + +VDM  + G +DDA   + DG    N + W  ++     +G+    
Sbjct: 453 SQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEVG 512

Query: 347 --EAVKLLRDMLQGSFCPDEVTLASILSSCG 375
              A KLL  +L  S     V L++I SS G
Sbjct: 513 KYAAEKLL--LLDPSCTAAYVLLSNIYSSEG 541


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/568 (32%), Positives = 304/568 (53%), Gaps = 34/568 (5%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVY-VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           K+LH+H+++  L     L + V+  Y +          +F+++    +V WN +I G+  
Sbjct: 34  KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93

Query: 142 CGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
               V     + RM    +  +++T   L +AC +  DI  GR++H   LK+GF    FV
Sbjct: 94  SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           S+AL+ +Y  CG +  A+++FD +L RDLV WN ++  Y+        + +F+ M    +
Sbjct: 154 SNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANI 213

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY----------- 308
           K D  T   ++ +C  LG  +    +   + + + ++DV +  +L+DMY           
Sbjct: 214 KADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQG 273

Query: 309 --------------------AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
                               AK GN+  A ++FD M  ++V+SW +M+ G+ Q     +A
Sbjct: 274 VFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDA 333

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           VKL ++M+     PD+VT+AS+LS+C  L        VH Y  ++GVQA + + N+LI+ 
Sbjct: 334 VKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDM 393

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KCG +  AL+ F  +K+ D V+WTS+I   A +G +  ++++F +ML   V+P    F
Sbjct: 394 YCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTF 453

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + +L AC+H GLV++GL YF  M S + ++P  +HY C+ DLL R G + +AY+ +  MP
Sbjct: 454 VGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMP 513

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           I P        + ACK+HG++ LA+ A ++LLEL+P    NY L+SN YA    W D  +
Sbjct: 514 IVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMK 573

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           +R++M D+   K  G S IE+ G +  +
Sbjct: 574 MRELMEDSDVQKPSGSSSIEVDGMVSNY 601



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 187/421 (44%), Gaps = 57/421 (13%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
            K  A+   +  G+++H H +KLG  + L + N ++H+Y  C      +K+FD M  R++
Sbjct: 123 FKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDL 182

Query: 130 VTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WNTLI G    N    V   F  M   N++ D +T   ++ AC    D E    +  +
Sbjct: 183 VSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKY 242

Query: 188 ILKVGFGLNCFVSSALVDLYG-------------------------------KCGFVEDA 216
           I +    ++ ++ + L+D+YG                               K G +  A
Sbjct: 243 IKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAA 302

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R++FD +  RD++ W  M++ Y+       A+ +F  M    +K D  T +S++++C  L
Sbjct: 303 RKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHL 362

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G   +G  +H  + +     D+ V  SL+DMY K G ++ A  VF  M  K+ VSW +++
Sbjct: 363 GKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVI 422

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   NG    A+ L   ML+    P   T   IL +C            HA  +  G++
Sbjct: 423 SGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA-----------HAGLVNKGLE 471

Query: 397 AFLSIE--NALINAYSKCGSIAGALQCFGSVKE-----------PDLVTWTSIIGAYAFH 443
            F S+E  + L+ A    G +   L   G++ +           PD+V W  ++ A   H
Sbjct: 472 YFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLH 531

Query: 444 G 444
           G
Sbjct: 532 G 532



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 6/194 (3%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A  G L  G  +H +I + G+   + + N ++ +Y KC   +   ++F  M+ 
Sbjct: 353 ASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 412

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           ++ V+W ++ISG+   G   +    F +ML + V+  H TF  +L AC  A  +  G   
Sbjct: 413 KDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEY 472

Query: 185 HSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNC 242
              +  V G          +VDL  + G ++ A     ++ +  D+V+W +++S   L+ 
Sbjct: 473 FESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLH- 531

Query: 243 LGDGAIAVFNLMRL 256
            G+  +A     RL
Sbjct: 532 -GNVVLAEIATKRL 544


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 313/567 (55%), Gaps = 7/567 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G+++H+H+++ GL  ++ + N ++ +Y KC   +   K+FD M + + ++WN +I+G
Sbjct: 211 LTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAG 270

Query: 139 IIN---CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                 C   +   F  ML D V  + +T  S+  A     D++  + +H+  +K GF  
Sbjct: 271 HFENHECEAGLE-LFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFAT 329

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           +    ++L+ +Y   G + +A  VF  +  RD + W  M+S Y  N   D A+ V+ LM 
Sbjct: 330 DVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALME 389

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
           +  +  D  T +S + +C +LG   +G ++H L   + F   ++VA +LV+MYAK+  I+
Sbjct: 390 VNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIE 449

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT-LASILSSC 374
            A  VF  M  K+V+SW++M+ GF  N    EA+   R ML     P+ VT +A++ +  
Sbjct: 450 KAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNSVTFIAALAACA 508

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            + S+ C  +++HA+ ++ G+ +   + NAL++ Y KCG    A   FG+    D+V+W 
Sbjct: 509 ATGSLRC-GKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWN 567

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
            ++  +  HG    ++  F +ML     PD + F+ +L  CS  G+VS+G   F+ M   
Sbjct: 568 IMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEK 627

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           Y I+P+ +HY C+ DLL RVG L E Y+ +  MPI P +   GA +  C++H +I L + 
Sbjct: 628 YSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGEL 687

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIH 614
           AA+ +LELEP+    + L+S++YA    W +V+++RK MR        GCSW+E+ G IH
Sbjct: 688 AAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIH 747

Query: 615 TFVSSDRSHPQAVHMYAMLCTVFGLME 641
            F++ D SHPQ   +  +L  ++  M+
Sbjct: 748 AFLTDDESHPQIKEINDVLDGIYERMK 774



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 98  LSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLL 155
           L L N +L + V+        K+F +M  R++ +WN ++ G    G        + RML 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLW 188

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
              R D  TF  +LR+C    D+ +GR +H+ +L+ G G+   V +ALV +Y KCG VE 
Sbjct: 189 AGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEA 248

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VFD +   D + WN M++ +  N   +  + +F  M  + ++ +  T +S+  + G 
Sbjct: 249 ARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGL 308

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
           L      ++IH L +K+ F  DV    SL+ MY+  G + +AC VF  M  ++ +SW  M
Sbjct: 309 LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAM 368

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL---ASILSSCGSLSISCETRQVHAYAIK 392
           + G+ +NG   +A+++   M   +  PD+VT+    +  +S G L +     ++H  A  
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGI---KLHELATS 425

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            G   ++ + NAL+  Y+K   I  A++ F  + + D+++W+S+I  + F+  + E++  
Sbjct: 426 KGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYY 485

Query: 453 FEKMLSHAVRPDSIAFL 469
           F  ML+  V+P+S+ F+
Sbjct: 486 FRHMLAD-VKPNSVTFI 501



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 188/364 (51%), Gaps = 22/364 (6%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           LRAC  AD         +F L++G        +A++ +  + G    A +VF ++  RD+
Sbjct: 114 LRACGHADAAH-----GTFGLRLG--------NAMLSMLVRFGETWHAWKVFAKMPERDV 160

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
             WNVMV  Y      + A+ +++ M   G + D +TF  ++ SCG +    +GR++H  
Sbjct: 161 FSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAH 220

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V++    ++V V  +LV MYAK G+++ A +VFDGM+  + +SWN M+ G  +N +    
Sbjct: 221 VLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAG 280

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++L   ML+    P+ +T+ S+  + G LS     +++HA A+K G    ++  N+LI  
Sbjct: 281 LELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQM 340

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           YS  G +  A   F  ++  D ++WT++I  Y  +G   +++EV+  M  + V PD +  
Sbjct: 341 YSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTV 400

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISD----YHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
              L+AC+  G +  G++   L  S     Y ++ ++     L ++  +  ++ +A ++ 
Sbjct: 401 ASALAACASLGRLDVGIKLHELATSKGFIRYIVVANA-----LVEMYAKSKIIEKAIEVF 455

Query: 525 ASMP 528
             MP
Sbjct: 456 KYMP 459



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 128/266 (48%), Gaps = 5/266 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G +LH      G    + + N ++ +Y K K  +   ++F  M  +++++W+++I
Sbjct: 411 GRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMI 470

Query: 137 SGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +G      N     YFR ML D V+ + +TF + L AC     +  G+ +H+ +L+ G  
Sbjct: 471 AGFCFNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIA 529

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
              +V +AL+DLY KCG    A   F     +D+V WN+M++ +  +  GD A++ FN M
Sbjct: 530 SEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEM 589

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGN 313
              G   D  TF +L+  C   G    G ++ H +  K S   ++     +VD+ ++ G 
Sbjct: 590 LETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGR 649

Query: 314 IDDACRVFDGMT-AKNVVSWNTMVVG 338
           + +     + M    +   W  ++ G
Sbjct: 650 LTEGYNFINRMPITPDAAVWGALLNG 675


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 297/558 (53%), Gaps = 21/558 (3%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G ++H   +K G    + +   ++H+Y + KA  +   LFDEM VR++ +WN +ISG   
Sbjct: 102 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 161

Query: 142 CGGNVTPYFRRMLLDNVR-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
            G          L + +R +D +T  SLL AC +A D   G  +HS+ +K G        
Sbjct: 162 SGNAKEAL---TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL------- 211

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
                   +   + D ++VFD +  RDL+ WN ++  Y LN     AI++F  MRL  ++
Sbjct: 212 --------ESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ 263

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACR 319
            D  T  SL +    LG  +  R + G  +++ + L D+ +  ++V MYAK G +D A  
Sbjct: 264 PDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 323

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLS 378
           VF+ +   +V+SWNT++ G+ QNG   EA+++   M + G    ++ T  S+L +C    
Sbjct: 324 VFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAG 383

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
              +  ++H   +KNG+   + +  +L + Y KCG +  AL  F  +   + V W ++I 
Sbjct: 384 ALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIA 443

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            + FHG  ++++ +F++ML   V+PD I F+ +LSACSH GLV EG   F +M +DY I 
Sbjct: 444 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGIT 503

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  +HY C+ D+ GR G L  A   + SM ++P +   GA + AC+VHG++ L K A+E 
Sbjct: 504 PSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEH 563

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           L E+EP     + L+SN+YAS   W  V  +R +       K PG S +E+  ++  F +
Sbjct: 564 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYT 623

Query: 619 SDRSHPQAVHMYAMLCTV 636
            +++HP    MY  L  +
Sbjct: 624 GNQTHPMYEEMYRELTAL 641



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 205/417 (49%), Gaps = 36/417 (8%)

Query: 121 FDEMRVRNIVTWNTLISGIINCGGNVTPYFR----RMLLDNVRLDHITFNSLLRACVQAD 176
           FD ++ R++  WN +ISG     GN +   R     ML   +  D+ TF S+L+AC    
Sbjct: 42  FDHIQNRDVYAWNLMISG-YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI 100

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D   G ++H   LK GF  + +V+++L+ LY +   V +AR +FDE+  RD+  WN M+S
Sbjct: 101 D---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 157

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            Y  +     A+ + N +R      D  T  SL+++C   G    G  IH   IK   + 
Sbjct: 158 GYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLES 213

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           ++L                D  +VFD M  ++++SWN+++  +  N     A+ L ++M 
Sbjct: 214 ELL---------------RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR 258

Query: 357 QGSFCPD---EVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKC 412
                PD    ++LASILS  G +  +C  R V  + ++ G     ++I NA++  Y+K 
Sbjct: 259 LSRIQPDCLTLISLASILSQLGDIR-AC--RSVQGFTLRKGWFLEDITIGNAVVVMYAKL 315

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEV 471
           G +  A   F  +   D+++W +II  YA +G + E+IE++  M     +  +   ++ V
Sbjct: 316 GLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSV 375

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           L ACS  G + +G++    ++ +   L D    T L D+ G+ G L +A  L   +P
Sbjct: 376 LPACSQAGALRQGMKLHGRLLKNGLYL-DVFVVTSLADMYGKCGRLEDALSLFYQIP 431



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 9/232 (3%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G L+QG +LH  ++K GL   + +   +  +Y KC   +D   LF ++   N 
Sbjct: 376 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNS 435

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V WNTLI+  G    G      F+ ML + V+ DHITF +LL AC  +  ++ G+     
Sbjct: 436 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE- 494

Query: 188 ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS-CYALNCL 243
           +++  +G+   +     +VD+YG+ G +E A +    + L  D  +W  ++S C     +
Sbjct: 495 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNV 554

Query: 244 GDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTL-GSSKLGRQIHGLVIKQS 293
             G IA  +L  +E    G +   S++  S G   G  ++    HG  ++++
Sbjct: 555 DLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 606


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 319/578 (55%), Gaps = 11/578 (1%)

Query: 77  GFLQQGKQLHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           G  +    L+  ++KLG    N L + +  + +Y +    D   K+FD    ++   WNT
Sbjct: 114 GDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNT 173

Query: 135 LISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           +I G I        V  + + M  ++  LD +TF S L A  Q   + +G+++H+F +K 
Sbjct: 174 MIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKN 233

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
              L+  V +A++ +Y +C  V+ +  VF+++  +D+V WN M+S +  N L +  + + 
Sbjct: 234 HTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLV 293

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
             M+ +G   D  T +SL+++   L + ++G+Q H  +I+     D +  + L+DMYAK+
Sbjct: 294 YEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGM-DSYLIDMYAKS 352

Query: 312 GNIDDACRVFDGMTAKN--VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           G I  + RVF+    +N    +WN ++ G+ QNG   +A    R ML+ +  P+ VTLAS
Sbjct: 353 GLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLAS 412

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           IL +C SL      +Q+H  +I+  +   + +  AL++ YSK G+I  A   F    E +
Sbjct: 413 ILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERN 472

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            VT+T++I  Y  HG+ + ++ +F  M    ++PD+I F+ VLSACS+ GLV EGLR F 
Sbjct: 473 SVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFE 532

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGS 548
            M  D+ I P + HY C+ D+LGRVG ++EAY+ +  +  E    +  G+ +GAC++HG 
Sbjct: 533 SMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHGH 592

Query: 549 IGLAKWAAEKLLELEP-SKPVNY-ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
           I L +  + +LLE+    +   Y  L+SN+YA E  W  V +LRK MR+    K  GCSW
Sbjct: 593 IELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGCSW 652

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           I+  G +  FVS D+ H +   +Y ML  +   ME+N+
Sbjct: 653 IDTGGLLVRFVSKDKDHTRCEEIYEMLERLAMEMEDND 690



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 212/402 (52%), Gaps = 20/402 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   ++   L  G+Q+H+  MK      +++ N +L +Y +C +     ++F++M  ++
Sbjct: 210 ALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKD 269

Query: 129 IVTWNTLISGIINCG----GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +V+WNT+ISG I  G    G +  Y   M       D +T  SLL A     + E+G++ 
Sbjct: 270 VVSWNTMISGFIQNGLDEEGLMLVY--EMQKQGFIADSVTVTSLLSAASNLRNREIGKQT 327

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD--EVLCRDLVLWNVMVSCYALNC 242
           H+++++ G   +  + S L+D+Y K G +  ++RVF+   +  RD   WN +++ Y  N 
Sbjct: 328 HAYLIRHGIKFDG-MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNG 386

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L + A   F LM  + ++ +  T +S++ +C +LGS  LG+Q+HG+ I+ S D ++ V T
Sbjct: 387 LVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRT 446

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVDMY+K+G I+ A  VF   + +N V++ TM++G+GQ+G G  A+ L   M +    P
Sbjct: 447 ALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQP 506

Query: 363 DEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           D +T  ++LS+C    +  E  ++       + I+     +  + + L     + G +  
Sbjct: 507 DAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADML----GRVGRVIE 562

Query: 418 ALQCFGSVKEPDLV--TWTSIIGAYAFHGLSKESIEVFEKML 457
           A +    + E   V   W S++GA   HG  +   EV  ++L
Sbjct: 563 AYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLL 604



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 208/406 (51%), Gaps = 9/406 (2%)

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQ 174
           + K+F  M  R+++ WNT++S  +     V     FR M+   ++   ++F ++  A   
Sbjct: 53  LHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISS 112

Query: 175 ADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             D +    L+  +LK+G  +  + FV S+ + +Y + G ++  R+VFD  L +   +WN
Sbjct: 113 VGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWN 172

Query: 233 VMVSCYAL-NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
            M+  +   N   +G       M+ E    D  TF S + +   L    LG+Q+H   +K
Sbjct: 173 TMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMK 232

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
               L V V  +++ MY++  ++  +  VF+ M  K+VVSWNTM+ GF QNG   E + L
Sbjct: 233 NHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLML 292

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
           + +M +  F  D VT+ S+LS+  +L      +Q HAY I++G++ F  +++ LI+ Y+K
Sbjct: 293 VYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIK-FDGMDSYLIDMYAK 351

Query: 412 CGSIAGALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
            G I  + + F   +++  D  TW ++I  Y  +GL +++   F  ML   +RP+++   
Sbjct: 352 SGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLA 411

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
            +L ACS  G ++ G +   + I  Y +  +    T L D+  + G
Sbjct: 412 SILPACSSLGSINLGKQLHGVSIR-YSLDQNIFVRTALVDMYSKSG 456


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/498 (32%), Positives = 282/498 (56%), Gaps = 6/498 (1%)

Query: 152 RMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG 211
           R+L         T+  L+  C     +    R+H  IL  G   + F+++ L+ +Y   G
Sbjct: 67  RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLG 126

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
            V+ AR+VFD+   R + +WN +     L   G+  + ++  M   G++ D FT++ ++ 
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 272 SCG----TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           +C     T+     G++IH  + ++ +   V + T+LVDMYA+ G +D A  VF GM  +
Sbjct: 187 ACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS--FCPDEVTLASILSSCGSLSISCETRQ 385
           NVVSW+ M+  + +NG   EA++  R+M++ +    P+ VT+ S+L +C SL+   + + 
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKL 306

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           +H Y ++ G+ + L + +AL+  Y +CG +    + F  + + D+V+W S+I +Y  HG 
Sbjct: 307 IHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            K++I++FE+ML++   P  + F+ VL ACSH GLV EG R F  M  D+ I P  EHY 
Sbjct: 367 GKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYA 426

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
           C+ DLLGR   L EA  ++  M  EP     G+ +G+C++HG++ LA+ A+ +L  LEP 
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              NY L++++YA  + W +V R++K++      K+PG  W+E+  ++++FVS D  +P 
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPL 546

Query: 626 AVHMYAMLCTVFGLMEEN 643
              ++A L  +   M+E 
Sbjct: 547 MEQIHAFLVKLAEDMKEK 564



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 190/376 (50%), Gaps = 10/376 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L    ++H HI+  G      L  +++ +Y    + D   K+FD+ R R I  WN L   
Sbjct: 93  LSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152

Query: 139 II--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD----DIEVGRRLHSFILKVG 192
           +     G  V   + +M    V  D  T+  +L+ACV ++     +  G+ +H+ + + G
Sbjct: 153 LTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRG 212

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +  + ++ + LVD+Y + G V+ A  VF  +  R++V W+ M++CYA N     A+  F 
Sbjct: 213 YSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272

Query: 253 LMRLEGMKG--DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
            M  E      +  T  S++ +C +L + + G+ IHG ++++  D  + V ++LV MY +
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G ++   RVFD M  ++VVSWN+++  +G +G G++A+++  +ML     P  VT  S+
Sbjct: 333 CGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV 392

Query: 371 LSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EP 428
           L +C    +  E +++     ++ G++  +     +++   +   +  A +    ++ EP
Sbjct: 393 LGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 429 DLVTWTSIIGAYAFHG 444
               W S++G+   HG
Sbjct: 453 GPKVWGSLLGSCRIHG 468



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 15/207 (7%)

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           +S N ++    + G  ++A+++L         P + T   ++  CG  S   +  +VH +
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQ----ESSPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            + NG      +   LI  YS  GS+  A + F   ++  +  W ++  A    G  +E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY----- 504
           + ++ KM    V  D   +  VL AC    + SE      +   + H       Y     
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKAC----VASECTVNHLMKGKEIHAHLTRRGYSSHVY 218

Query: 505 --TCLTDLLGRVGLLVEAYDLLASMPI 529
             T L D+  R G +  A  +   MP+
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPV 245


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 277/476 (58%), Gaps = 1/476 (0%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++K     + F+   LV +Y K G+ EDA+R+FDE+  +DLV WN ++S  +    
Sbjct: 84  IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143

Query: 244 GDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               +  F  MR E G + +  T  S+V++C  +G+   G+ +HG+V+K        V  
Sbjct: 144 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 203

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL++MY K G +D A ++F+ M  +++VSWN+MVV    NG   + + L   M +    P
Sbjct: 204 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 263

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D+ T+ ++L +C    +  +   +HAY  + G  A + I  AL+N Y+K G +  +   F
Sbjct: 264 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 323

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +K+ D + WT+++  YA H   +E+I++F+ M+   V  D + F  +LSACSH GLV 
Sbjct: 324 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 383

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG +YF +M   Y + P  +HY+C+ DLLGR G L +AY+L+ SMP+EP S   GA +GA
Sbjct: 384 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 443

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+V+G++ L K  AE+LL L+PS   NY ++SN+Y++   W D +++R +M++    + P
Sbjct: 444 CRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNP 503

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           GCS+IE   +IH FV  D+ HP++  ++  L  +   + E   +     +  ++DE
Sbjct: 504 GCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDE 559



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 198/362 (54%), Gaps = 5/362 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           ++++ +Y K    +D ++LFDEM  +++V+WN+L+SG+   G  G     F RM  ++ R
Sbjct: 101 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 160

Query: 160 L-DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
             + +T  S++ AC     ++ G+ LH  ++K+G      V ++L+++YGK GF++ A +
Sbjct: 161 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 220

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +F+E+  R LV WN MV  +  N   +  + +FNLM+  G+  D  T  +L+ +C   G 
Sbjct: 221 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL 280

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
            +    IH  + +  F+ D+++AT+L+++YAK G ++ +  +F+ +  ++ ++W  M+ G
Sbjct: 281 GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAG 340

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQA 397
           +  +  GREA+KL   M++     D VT   +LS+C    +  E ++      +   V+ 
Sbjct: 341 YAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEP 400

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
            L   + +++   + G +  A +   S+  EP    W +++GA   +G  +   EV E++
Sbjct: 401 RLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQL 460

Query: 457 LS 458
           LS
Sbjct: 461 LS 462



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 144/260 (55%), Gaps = 15/260 (5%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L +GK LH  ++KLG+  K  + N ++++Y K    D   +LF+EM VR++V+WN
Sbjct: 175 ADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWN 234

Query: 134 TLISGIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR---LHSF 187
           +++  I N  G        F  M    +  D  T  +LLRAC    D  +GR+   +H++
Sbjct: 235 SMVV-IHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT---DTGLGRQAESIHAY 290

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I + GF  +  +++AL++LY K G +  +  +F+E+  RD + W  M++ YA++  G  A
Sbjct: 291 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 350

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR---QIHGLVIKQSFDLDVLVATSL 304
           I +F+LM  EG++ D+ TF+ L+++C   G  + G+   +I   V +    LD    + +
Sbjct: 351 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCM 408

Query: 305 VDMYAKNGNIDDACRVFDGM 324
           VD+  ++G ++DA  +   M
Sbjct: 409 VDLLGRSGRLEDAYELIKSM 428



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 1/230 (0%)

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           NL +L      Y    SLV +  +  S      IH  VIK     D  +   LV MY K 
Sbjct: 51  NLFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKL 110

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASI 370
           G  +DA R+FD M  K++VSWN+++ G    G  G       R   +    P+EVTL S+
Sbjct: 111 GYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSV 170

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           +S+C  +    E + +H   +K G+     + N+LIN Y K G +  A Q F  +    L
Sbjct: 171 VSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSL 230

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
           V+W S++  +  +G +++ +++F  M    + PD    + +L AC+  GL
Sbjct: 231 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL 280



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+     G  +Q + +H++I + G    + +   +L++Y K    +  E +F+E++ R+ 
Sbjct: 272 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 331

Query: 130 VTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR---L 184
           + W  +++G  +  CG      F  M+ + V +DH+TF  LL AC  +  +E G++   +
Sbjct: 332 IAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEI 391

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            S + +V   L+ +  S +VDL G+ G +EDA
Sbjct: 392 MSEVYRVEPRLDHY--SCMVDLLGRSGRLEDA 421


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/569 (31%), Positives = 306/569 (53%), Gaps = 7/569 (1%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            GKQ+H   +K  +   L + N  L +Y K  A  D + LF  +  ++ ++WN L  G+  
Sbjct: 455  GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 514

Query: 142  C--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                       +RM L  +  D ++F++ + AC      E G+++H   +K G   N  V
Sbjct: 515  NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAV 574

Query: 200  SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
             S+L+DLY K G VE +R++F +V    +V  N +++ +  N   D AI +F  +  +G+
Sbjct: 575  GSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGL 634

Query: 260  KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDA 317
            K    TFSS+++ C    +S +G+Q+H   +K    +D D L+  SL  +Y K+  ++DA
Sbjct: 635  KPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYD-DTLLGVSLAGIYLKSKMLEDA 693

Query: 318  CRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             ++   M   KN+  W  ++ G+ QNG G  ++     M   +   DE T AS+L +C  
Sbjct: 694  NKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSD 753

Query: 377  LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTS 435
            ++   + +++H    K+G  ++ +  +ALI+ YSKCG +  + + F  +K + D++ W S
Sbjct: 754  VTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNS 813

Query: 436  IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
            +I  +A +G + E++ +F+KM    ++PD + FL VL AC+H GL+SEG  +F  M   Y
Sbjct: 814  MIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVY 873

Query: 496  HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
             + P  +HY C  DLLGR G L EA + +  +P  P       ++ AC++H      K A
Sbjct: 874  GLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIA 933

Query: 556  AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            A KL+ELEP     Y L+S+++A+   W +    R+ MR+    K PGCSWI +  +   
Sbjct: 934  ARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSL 993

Query: 616  FVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
            F+  D+ HP  + +Y ML  + G+M+++N
Sbjct: 994  FLVQDKYHPDNLRIYEMLGDLTGMMKKDN 1022



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 232/465 (49%), Gaps = 2/465 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +    + G  Q+   L S + K+G          ++         D    L  +M 
Sbjct: 237 WSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMP 296

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V WN +ISG    G   NV   ++ M    +     TF S+L A         G++
Sbjct: 297 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ 356

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+  +  G   N FV S+L++LY KCG   DA+ VFD    +++V+WN M++ +  N L
Sbjct: 357 MHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNEL 416

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + AI +F  M    ++ D FTF S++ +C  L S  LG+Q+H + IK   D+ + VA +
Sbjct: 417 PEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA 476

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
            +DMY+K G I DA  +F  +  K+ +SWN + VG  QN +  EAV +L+ M      PD
Sbjct: 477 TLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPD 536

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           +V+ ++ +++C ++  +   +Q+H  AIK G+ +  ++ ++LI+ YSK G +  + + F 
Sbjct: 537 DVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFA 596

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            V    +V   ++I  +  +    E+I++F+++L   ++P S+ F  +LS CS     + 
Sbjct: 597 QVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAI 656

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           G +     +    +  D+     L  +  +  +L +A  LL  MP
Sbjct: 657 GKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMP 701



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 241/475 (50%), Gaps = 19/475 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S ++  L  +A      +G+Q+H+  +  GL   + + + ++++Y KC    D + +FD 
Sbjct: 336 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 395

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDI 178
              +NIV WN +++G +    N  P      F+ M+   ++ D  TF S+L AC      
Sbjct: 396 SCEKNIVMWNAMLTGFVQ---NELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 452

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+++H   +K    ++ FV++A +D+Y K G + DA+ +F  +  +D + WN +    
Sbjct: 453 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 512

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N   + A+ +   MRL G+  D  +FS+ +N+C  + +++ G+QIH L IK     + 
Sbjct: 513 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 572

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V +SL+D+Y+K+G+++ + ++F  + A ++V  N ++ GF QN +  EA++L + +L+ 
Sbjct: 573 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 632

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV---QAFLSIENALINAYSKCGSI 415
              P  VT +SILS C     S   +QVH Y +K+GV      L +  A I   SK    
Sbjct: 633 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 692

Query: 416 AGALQCFGSVKEPD---LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           A  L      + PD   L  WT+II  YA +G    S+  F +M    VR D   F  VL
Sbjct: 693 ANKLL----TEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVL 748

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            ACS     ++G +  + +I+           + L D+  + G ++ +++    +
Sbjct: 749 KACSDVTAFADG-KEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKEL 802



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 216/476 (45%), Gaps = 41/476 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G L  G+Q+H  ++K G  + +  +  ++ +Y KC    +  ++FD +   + 
Sbjct: 175 LSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDT 234

Query: 130 VTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + W+++I+    + C       F RM       D +T  +++     +            
Sbjct: 235 ICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASS------------ 282

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
                                  G ++ A  +  ++     V WN ++S +A + L    
Sbjct: 283 -----------------------GRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNV 319

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + ++  MR  G+     TF+S++++   + +   G+Q+H   +    D +V V +SL+++
Sbjct: 320 LGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINL 379

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G   DA  VFD    KN+V WN M+ GF QN    EA+++ + M++ +   DE T 
Sbjct: 380 YAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTF 439

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            SIL +C  LS     +QVH   IKN +   L + NA ++ YSK G+I  A   F  +  
Sbjct: 440 VSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPY 499

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D ++W ++    A +   +E++ + ++M  H + PD ++F   ++ACS+      G + 
Sbjct: 500 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 559

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFI 540
             L I  Y I  +    + L DL  + G +  +  + A +    I P +  +  F+
Sbjct: 560 HCLAIK-YGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 614



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 35/319 (10%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           R D      +L AC +   +  GR++H  ++K GF  + F  +ALVD+Y KCG V +ARR
Sbjct: 165 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 224

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VFD + C D + W+ M++CY        A+A+F+ M   G   D  T  ++++   TL S
Sbjct: 225 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIIS---TLAS 281

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           S                                G +D A  +   M   + V+WN ++ G
Sbjct: 282 S--------------------------------GRLDHATALLKKMPTPSTVAWNAVISG 309

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q+G     + L +DM      P   T AS+LS+  ++    E +Q+HA A+ +G+ A 
Sbjct: 310 HAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDAN 369

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + ++LIN Y+KCG  + A   F    E ++V W +++  +  + L +E+I +F+ M+ 
Sbjct: 370 VFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR 429

Query: 459 HAVRPDSIAFLEVLSACSH 477
           + ++ D   F+ +L AC++
Sbjct: 430 YTLQTDEFTFVSILGACTY 448



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 36/304 (11%)

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R LH  IL+ G  L   +  +LV+LY K G V  A         R     + ++SC+A +
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 242 CLGDGAIAVFNLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                 +  F  +R   G + D F  + ++++C  +G    GRQ+H  V+K  F   V  
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +LVDMYAK G++ +A RVFDG+   + + W++M+  + + G  +EA+ L   M +   
Sbjct: 206 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 265

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD+VTL +I+S+  S       R  HA A+                             
Sbjct: 266 APDQVTLVTIISTLAS-----SGRLDHATAL----------------------------- 291

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
               +  P  V W ++I  +A  GL    + +++ M S  + P    F  +LSA ++   
Sbjct: 292 -LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 350

Query: 481 VSEG 484
             EG
Sbjct: 351 FVEG 354



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV-- 336
           S+  R +HG +++    L   +  SLV++Y K+G +  A         +   + ++++  
Sbjct: 82  SQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSC 141

Query: 337 -VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
               G  GD   A + +R    G   PD+  LA +LS+C  + +    RQVH   +K+G 
Sbjct: 142 HARSGSPGDVLGAFRYIRCTAGGR--PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGF 199

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + +  E AL++ Y+KCG +  A + F  +  PD + W+S+I  Y   G  +E++ +F +
Sbjct: 200 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSR 259

Query: 456 MLSHAVRPDSIAFLEVLSACSHGG 479
           M      PD +  + ++S  +  G
Sbjct: 260 MDKMGSAPDQVTLVTIISTLASSG 283



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 9/237 (3%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H +  S  + ++  LK  +       GK++H  I K G  +  +  + ++ +Y KC    
Sbjct: 734 HCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVI 793

Query: 116 DMEKLFDEMRVR-NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
              + F E++ + +I+ WN++I G    G        F++M    ++ D +TF  +L AC
Sbjct: 794 SSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIAC 853

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLV 229
             +  I  GR     + KV +GL   +   +  +DL G+ G +++A+   D++  R D V
Sbjct: 854 THSGLISEGRHFFGSMRKV-YGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 912

Query: 230 LW-NVMVSCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
           +W   + +C        G IA   L+ LE      Y   SSL  + G    +K+ R+
Sbjct: 913 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRE 969


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 297/545 (54%), Gaps = 4/545 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           ++ + +  K   L  G Q+HS I+KLG      +   ++ +Y KC +  D  K+FDEM  
Sbjct: 72  TKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSC 131

Query: 127 RNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            ++VTWN+L++G +  G  +     F  ML   +     + +  L  C Q    ++G +L
Sbjct: 132 PSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQL 191

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+  LK+ F  N  V + L+D+Y KC  ++D+RRVFD +L +++  W  M+S YA N L 
Sbjct: 192 HAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLP 251

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +   M    ++ +  T++SL++S          +QIH  +I + ++ +  +A +L
Sbjct: 252 HEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTL 311

Query: 305 VDMYAKN-GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           V  Y++  G+++D  +V   +   + +SWN ++ GF   G G EA++    M +  F  D
Sbjct: 312 VTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVD 371

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T  SI  + G  S   E +Q+H    K G    LS++N L++ Y++ G+I  +   F 
Sbjct: 372 FFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFS 431

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            + E DL++W S++   A+HG  +E+I++FEKM    ++PD+ +FL VL+ACSH GL+ +
Sbjct: 432 MMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDK 491

Query: 484 GLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           GL YF LM +   + P   EHY  L DL GR G L EA   + S+PIEP      A + A
Sbjct: 492 GLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSA 551

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C +HG+  +A   A+KLLEL P  P  Y ++SN    +  W D A +R++M +    K P
Sbjct: 552 CLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEP 611

Query: 603 GCSWI 607
           G SW+
Sbjct: 612 GFSWM 616



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%)

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           ++ L  +L+    P    L   +S C   ++     QVH+  IK G      I  AL++ 
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KC SI+ A + F  +  P +VTW S++  Y   G    ++ +F +ML   + P   + 
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 469 LEVLSACSH 477
              L  CS 
Sbjct: 173 SGGLVGCSQ 181


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/569 (31%), Positives = 306/569 (53%), Gaps = 7/569 (1%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            GKQ+H   +K  +   L + N  L +Y K  A  D + LF  +  ++ ++WN L  G+  
Sbjct: 445  GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 504

Query: 142  C--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                       +RM L  +  D ++F++ + AC      E G+++H   +K G   N  V
Sbjct: 505  NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAV 564

Query: 200  SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
             S+L+DLY K G VE +R++F +V    +V  N +++ +  N   D AI +F  +  +G+
Sbjct: 565  GSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGL 624

Query: 260  KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDA 317
            K    TFSS+++ C    +S +G+Q+H   +K    +D D L+  SL  +Y K+  ++DA
Sbjct: 625  KPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYD-DTLLGVSLAGIYLKSKMLEDA 683

Query: 318  CRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             ++   M   KN+  W  ++ G+ QNG G  ++     M   +   DE T AS+L +C  
Sbjct: 684  NKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSD 743

Query: 377  LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTS 435
            ++   + +++H    K+G  ++ +  +ALI+ YSKCG +  + + F  +K + D++ W S
Sbjct: 744  VTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNS 803

Query: 436  IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
            +I  +A +G + E++ +F+KM    ++PD + FL VL AC+H GL+SEG  +F  M   Y
Sbjct: 804  MIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVY 863

Query: 496  HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
             + P  +HY C  DLLGR G L EA + +  +P  P       ++ AC++H      K A
Sbjct: 864  GLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIA 923

Query: 556  AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            A KL+ELEP     Y L+S+++A+   W +    R+ MR+    K PGCSWI +  +   
Sbjct: 924  ARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSL 983

Query: 616  FVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
            F+  D+ HP  + +Y ML  + G+M+++N
Sbjct: 984  FLVQDKYHPDNLRIYEMLGDLTGMMKKDN 1012



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 229/456 (50%), Gaps = 2/456 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G  Q+   L S + K+G          ++         D    L  +M   + V WN 
Sbjct: 236 RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 295

Query: 135 LISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG    G   NV   ++ M    +     TF S+L A         G+++H+  +  G
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV S+L++LY KCG   DA+ VFD    +++V+WN M++ +  N L + AI +F 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 415

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M    ++ D FTF S++ +C  L S  LG+Q+H + IK   D+ + VA + +DMY+K G
Sbjct: 416 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYG 475

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            I DA  +F  +  K+ +SWN + VG  QN +  EAV +L+ M      PD+V+ ++ ++
Sbjct: 476 AIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAIN 535

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C ++  +   +Q+H  AIK G+ +  ++ ++LI+ YSK G +  + + F  V    +V 
Sbjct: 536 ACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVP 595

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             ++I  +  +    E+I++F+++L   ++P S+ F  +LS CS     + G +     +
Sbjct: 596 INALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTL 655

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               +  D+     L  +  +  +L +A  LL  MP
Sbjct: 656 KSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMP 691



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 241/475 (50%), Gaps = 19/475 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S ++  L  +A      +G+Q+H+  +  GL   + + + ++++Y KC    D + +FD 
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDI 178
              +NIV WN +++G +    N  P      F+ M+   ++ D  TF S+L AC      
Sbjct: 386 SCEKNIVMWNAMLTGFVQ---NELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 442

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+++H   +K    ++ FV++A +D+Y K G + DA+ +F  +  +D + WN +    
Sbjct: 443 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 502

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N   + A+ +   MRL G+  D  +FS+ +N+C  + +++ G+QIH L IK     + 
Sbjct: 503 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 562

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V +SL+D+Y+K+G+++ + ++F  + A ++V  N ++ GF QN +  EA++L + +L+ 
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 622

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV---QAFLSIENALINAYSKCGSI 415
              P  VT +SILS C     S   +QVH Y +K+GV      L +  A I   SK    
Sbjct: 623 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 682

Query: 416 AGALQCFGSVKEPD---LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           A  L      + PD   L  WT+II  YA +G    S+  F +M    VR D   F  VL
Sbjct: 683 ANKLL----TEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVL 738

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            ACS     ++G +  + +I+           + L D+  + G ++ +++    +
Sbjct: 739 KACSDVTAFADG-KEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKEL 792



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 216/476 (45%), Gaps = 41/476 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G L  G+Q+H  ++K G  + +  +  ++ +Y KC    +  ++FD +   + 
Sbjct: 165 LSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDT 224

Query: 130 VTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + W+++I+    + C       F RM       D +T  +++     +            
Sbjct: 225 ICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASS------------ 272

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
                                  G ++ A  +  ++     V WN ++S +A + L    
Sbjct: 273 -----------------------GRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNV 309

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + ++  MR  G+     TF+S++++   + +   G+Q+H   +    D +V V +SL+++
Sbjct: 310 LGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINL 369

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G   DA  VFD    KN+V WN M+ GF QN    EA+++ + M++ +   DE T 
Sbjct: 370 YAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTF 429

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            SIL +C  LS     +QVH   IKN +   L + NA ++ YSK G+I  A   F  +  
Sbjct: 430 VSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPY 489

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D ++W ++    A +   +E++ + ++M  H + PD ++F   ++ACS+      G + 
Sbjct: 490 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 549

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFI 540
             L I  Y I  +    + L DL  + G +  +  + A +    I P +  +  F+
Sbjct: 550 HCLAIK-YGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 604



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 35/319 (10%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           R D      +L AC +   +  GR++H  ++K GF  + F  +ALVD+Y KCG V +ARR
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VFD + C D + W+ M++CY        A+A+F+ M   G   D  T  ++++   TL S
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIIS---TLAS 271

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           S                                G +D A  +   M   + V+WN ++ G
Sbjct: 272 S--------------------------------GRLDHATALLKKMPTPSTVAWNAVISG 299

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q+G     + L +DM      P   T AS+LS+  ++    E +Q+HA A+ +G+ A 
Sbjct: 300 HAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDAN 359

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + ++LIN Y+KCG  + A   F    E ++V W +++  +  + L +E+I +F+ M+ 
Sbjct: 360 VFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR 419

Query: 459 HAVRPDSIAFLEVLSACSH 477
           + ++ D   F+ +L AC++
Sbjct: 420 YTLQTDEFTFVSILGACTY 438



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 36/304 (11%)

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R LH  IL+ G  L   +  +LV+LY K G V  A         R     + ++SC+A +
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 242 CLGDGAIAVFNLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                 +  F  +R   G + D F  + ++++C  +G    GRQ+H  V+K  F   V  
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +LVDMYAK G++ +A RVFDG+   + + W++M+  + + G  +EA+ L   M +   
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD+VTL +I+S+  S       R  HA A+                             
Sbjct: 256 APDQVTLVTIISTLAS-----SGRLDHATAL----------------------------- 281

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
               +  P  V W ++I  +A  GL    + +++ M S  + P    F  +LSA ++   
Sbjct: 282 -LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 481 VSEG 484
             EG
Sbjct: 341 FVEG 344



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV-- 336
           S+  R +HG +++    L   +  SLV++Y K+G +  A         +   + ++++  
Sbjct: 72  SQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSC 131

Query: 337 -VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
               G  GD   A + +R    G   PD+  LA +LS+C  + +    RQVH   +K+G 
Sbjct: 132 HARSGSPGDVLGAFRYIRCTAGGR--PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGF 189

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + +  E AL++ Y+KCG +  A + F  +  PD + W+S+I  Y   G  +E++ +F +
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSR 249

Query: 456 MLSHAVRPDSIAFLEVLSACSHGG 479
           M      PD +  + ++S  +  G
Sbjct: 250 MDKMGSAPDQVTLVTIISTLASSG 273



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 9/237 (3%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H +  S  + ++  LK  +       GK++H  I K G  +  +  + ++ +Y KC    
Sbjct: 724 HCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVI 783

Query: 116 DMEKLFDEMRVR-NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
              + F E++ + +I+ WN++I G    G        F++M    ++ D +TF  +L AC
Sbjct: 784 SSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIAC 843

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLV 229
             +  I  GR     + KV +GL   +   +  +DL G+ G +++A+   D++  R D V
Sbjct: 844 THSGLISEGRHFFGPMRKV-YGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 902

Query: 230 LW-NVMVSCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
           +W   + +C        G IA   L+ LE      Y   SSL  + G    +K+ R+
Sbjct: 903 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRE 959


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 287/501 (57%), Gaps = 6/501 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF  L+ +C++ + +  G  +H  ++  G   + ++++ L+++Y   G V+ A +VFDE 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG----TLGSS 279
             + + +WN +    A+   G+  + ++  M   G+  + FT++ ++ +C     ++   
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           + G++IH  +++  ++  V V T+L+D+YA+ G +  A  VF  M  KN+VSW+ M+  +
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 340 GQNGDGREAVKLLRDMLQGS--FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            +N    +A++L + M+  +    P+ +T+ S+L +C SL+     + VHAY ++ G+ +
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDS 315

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            L + N LI  Y +CG I+   + F  +K+ D+++W S+I  Y  HGL K++I++FE M+
Sbjct: 316 TLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMI 375

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
           +  V P  I F+ VL ACSH GLV E    F  M++ Y I P  EHY C+ D+LGR   L
Sbjct: 376 NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRL 435

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA +L+ +M  +P     G+ +G+C++H ++ LA+ A+  L ELEP    NY L+S++Y
Sbjct: 436 DEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIY 495

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A  R W DV R+RK +      K+P CSWIE+  +I++ VS +  +PQ   + A L T+ 
Sbjct: 496 AKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLL 555

Query: 638 GLMEENNVSGHCNVLDKEMDE 658
             ++        NV+  ++DE
Sbjct: 556 TEIKNQGYVPQTNVVTYDLDE 576



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 190/375 (50%), Gaps = 10/375 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  G  +H  ++  GL     L  +++++Y    + D   K+FDE R + I  WN +   
Sbjct: 90  LSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRA 149

Query: 139 IINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD----DIEVGRRLHSFILKVG 192
           +     G ++   + +M    +  +  T+  +L+ACV ++     +  G+ +H+ IL+ G
Sbjct: 150 LAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHG 209

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +  +  V + L+D+Y + G+V  A  VF  +  +++V W+ M++CYA N +   A+ +F 
Sbjct: 210 YEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQ 269

Query: 253 LMRLEGMKG--DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           +M LE      +  T  S++ +C +L + + G+ +H  V+++  D  + V  +L+ MY +
Sbjct: 270 IMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGR 329

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G I    RVFD M  ++V+SWN+++  +G +G G++A+++  +M+     P  +T  ++
Sbjct: 330 CGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITV 389

Query: 371 LSSCGSLSISCETRQVHAYAI-KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EP 428
           L +C    +  E + +    + K  +   +     +++   +   +  A++   ++  +P
Sbjct: 390 LCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKP 449

Query: 429 DLVTWTSIIGAYAFH 443
               W S++G+   H
Sbjct: 450 GPTVWGSLLGSCRIH 464



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 79/150 (52%), Gaps = 3/150 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+  A    L+ GK +H+++++ GL + L + N ++ +Y +C      +++FD M+ R++
Sbjct: 289 LQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDV 348

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL-HS 186
           ++WN+LIS  G+   G      F  M+   V   +ITF ++L AC  A  +E  + L  S
Sbjct: 349 ISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFES 408

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            + K          + +VD+ G+   +++A
Sbjct: 409 MLNKYRIHPRMEHYACMVDILGRANRLDEA 438



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 21/217 (9%)

Query: 323 GMTAKNVVSWNT--MVVGFGQNGDGREAVKLLRDMLQGSFC----PDEVTLASILSSCGS 376
           G   K++ S N   ++    + G+ ++AV+LL        C    P + T   +++SC  
Sbjct: 35  GYPTKDIKSNNNDDLIQSLCRGGNLKQAVQLL--------CCEPNPTKKTFELLINSCIE 86

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            +   +   VH   + +G+     +   LIN Y   GS+  A + F   +E  +  W +I
Sbjct: 87  QNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAI 146

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
             A A     ++ + ++ +M    +  +   +  VL AC    L    LR    + +  H
Sbjct: 147 FRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHA--H 204

Query: 497 ILPDSEH-----YTCLTDLLGRVGLLVEAYDLLASMP 528
           IL           T L D+  R G +  A  +  +MP
Sbjct: 205 ILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMP 241


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/569 (31%), Positives = 306/569 (53%), Gaps = 7/569 (1%)

Query: 82   GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
            GKQ+H   +K  +   L + N  L +Y K  A  D + LF  +  ++ ++WN L  G+  
Sbjct: 445  GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 504

Query: 142  C--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
                       +RM L  +  D ++F++ + AC      E G+++H   +K G   N  V
Sbjct: 505  NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAV 564

Query: 200  SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
             S+L+DLY K G VE +R++F +V    +V  N +++ +  N   D AI +F  +  +G+
Sbjct: 565  GSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGL 624

Query: 260  KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDA 317
            K    TFSS+++ C    +S +G+Q+H   +K    +D D L+  SL  +Y K+  ++DA
Sbjct: 625  KPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYD-DTLLGVSLAGIYLKSKMLEDA 683

Query: 318  CRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             ++   M   KN+  W  ++ G+ QNG G  ++     M   +   DE T AS+L +C  
Sbjct: 684  NKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSD 743

Query: 377  LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTS 435
            ++   + +++H    K+G  ++ +  +ALI+ YSKCG +  + + F  +K + D++ W S
Sbjct: 744  VTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNS 803

Query: 436  IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
            +I  +A +G + E++ +F+KM    ++PD + FL VL AC+H GL+SEG  +F  M   Y
Sbjct: 804  MIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVY 863

Query: 496  HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
             + P  +HY C  DLLGR G L EA + +  +P  P       ++ AC++H      K A
Sbjct: 864  GLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIA 923

Query: 556  AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            A KL+ELEP     Y L+S+++A+   W +    R+ MR+    K PGCSWI +  +   
Sbjct: 924  ARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSL 983

Query: 616  FVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
            F+  D+ HP  + +Y ML  + G+M+++N
Sbjct: 984  FLVQDKYHPDNLRIYEMLGDLTGMMKKDN 1012



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 229/456 (50%), Gaps = 2/456 (0%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G  Q+   L S + K+G          ++         D    L  +M   + V WN 
Sbjct: 236 RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 295

Query: 135 LISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG    G   NV   ++ M    +     TF S+L A         G+++H+  +  G
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              N FV S+L++LY KCG   DA+ VFD    +++V+WN M++ +  N L + AI +F 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 415

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M    ++ D FTF S++ +C  L S  LG+Q+H + IK   D+ + VA + +DMY+K G
Sbjct: 416 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYG 475

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            I DA  +F  +  K+ +SWN + VG  QN +  EAV +L+ M      PD+V+ ++ ++
Sbjct: 476 AIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAIN 535

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C ++  +   +Q+H  AIK G+ +  ++ ++LI+ YSK G +  + + F  V    +V 
Sbjct: 536 ACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVP 595

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
             ++I  +  +    E+I++F+++L   ++P S+ F  +LS CS     + G +     +
Sbjct: 596 INALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTL 655

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
               +  D+     L  +  +  +L +A  LL  MP
Sbjct: 656 KSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMP 691



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 241/475 (50%), Gaps = 19/475 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S ++  L  +A      +G+Q+H+  +  GL   + + + ++++Y KC    D + +FD 
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 124 MRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADDI 178
              +NIV WN +++G +    N  P      F+ M+   ++ D  TF S+L AC      
Sbjct: 386 SCEKNIVMWNAMLTGFVQ---NELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 442

Query: 179 EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
            +G+++H   +K    ++ FV++A +D+Y K G + DA+ +F  +  +D + WN +    
Sbjct: 443 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 502

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N   + A+ +   MRL G+  D  +FS+ +N+C  + +++ G+QIH L IK     + 
Sbjct: 503 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 562

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V +SL+D+Y+K+G+++ + ++F  + A ++V  N ++ GF QN +  EA++L + +L+ 
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 622

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV---QAFLSIENALINAYSKCGSI 415
              P  VT +SILS C     S   +QVH Y +K+GV      L +  A I   SK    
Sbjct: 623 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 682

Query: 416 AGALQCFGSVKEPD---LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           A  L      + PD   L  WT+II  YA +G    S+  F +M    VR D   F  VL
Sbjct: 683 ANKLL----TEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVL 738

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            ACS     ++G +  + +I+           + L D+  + G ++ +++    +
Sbjct: 739 KACSDVTAFADG-KEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKEL 792



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 216/476 (45%), Gaps = 41/476 (8%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   ++ G L  G+Q+H  ++K G  + +  +  ++ +Y KC    +  ++FD +   + 
Sbjct: 165 LSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDT 224

Query: 130 VTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           + W+++I+    + C       F RM       D +T  +++     +            
Sbjct: 225 ICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASS------------ 272

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
                                  G ++ A  +  ++     V WN ++S +A + L    
Sbjct: 273 -----------------------GRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNV 309

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + ++  MR  G+     TF+S++++   + +   G+Q+H   +    D +V V +SL+++
Sbjct: 310 LGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINL 369

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G   DA  VFD    KN+V WN M+ GF QN    EA+++ + M++ +   DE T 
Sbjct: 370 YAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTF 429

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427
            SIL +C  LS     +QVH   IKN +   L + NA ++ YSK G+I  A   F  +  
Sbjct: 430 VSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPY 489

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487
            D ++W ++    A +   +E++ + ++M  H + PD ++F   ++ACS+      G + 
Sbjct: 490 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 549

Query: 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFI 540
             L I  Y I  +    + L DL  + G +  +  + A +    I P +  +  F+
Sbjct: 550 HCLAIK-YGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFV 604



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 35/319 (10%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           R D      +L AC +   +  GR++H  ++K GF  + F  +ALVD+Y KCG V +ARR
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VFD + C D + W+ M++CY        A+A+F+ M   G   D  T  ++++   TL S
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIIS---TLAS 271

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           S                                G +D A  +   M   + V+WN ++ G
Sbjct: 272 S--------------------------------GRLDHATALLKKMPTPSTVAWNAVISG 299

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q+G     + L +DM      P   T AS+LS+  ++    E +Q+HA A+ +G+ A 
Sbjct: 300 HAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDAN 359

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           + + ++LIN Y+KCG  + A   F    E ++V W +++  +  + L +E+I +F+ M+ 
Sbjct: 360 VFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR 419

Query: 459 HAVRPDSIAFLEVLSACSH 477
           + ++ D   F+ +L AC++
Sbjct: 420 YTLQTDEFTFVSILGACTY 438



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 36/304 (11%)

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R LH  IL+ G  L   +  +LV+LY K G V  A         R     + ++SC+A +
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 242 CLGDGAIAVFNLMR-LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                 +  F  +R   G + D F  + ++++C  +G    GRQ+H  V+K  F   V  
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
             +LVDMYAK G++ +A RVFDG+   + + W++M+  + + G  +EA+ L   M +   
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            PD+VTL +I+S+  S       R  HA A+                             
Sbjct: 256 APDQVTLVTIISTLAS-----SGRLDHATAL----------------------------- 281

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
               +  P  V W ++I  +A  GL    + +++ M S  + P    F  +LSA ++   
Sbjct: 282 -LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 481 VSEG 484
             EG
Sbjct: 341 FVEG 344



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV-- 336
           S+  R +HG +++    L   +  SLV++Y K+G +  A         +   + ++++  
Sbjct: 72  SQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSC 131

Query: 337 -VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
               G  GD   A + +R    G   PD+  LA +LS+C  + +    RQVH   +K+G 
Sbjct: 132 HARSGSPGDVLGAFRYIRCTAGGR--PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGF 189

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + +  E AL++ Y+KCG +  A + F  +  PD + W+S+I  Y   G  +E++ +F +
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSR 249

Query: 456 MLSHAVRPDSIAFLEVLSACSHGG 479
           M      PD +  + ++S  +  G
Sbjct: 250 MDKMGSAPDQVTLVTIISTLASSG 273



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 9/237 (3%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H +  S  + ++  LK  +       GK++H  I K G  +  +  + ++ +Y KC    
Sbjct: 724 HCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVI 783

Query: 116 DMEKLFDEMRVR-NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
              + F E++ + +I+ WN++I G    G        F++M    ++ D +TF  +L AC
Sbjct: 784 SSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIAC 843

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLV 229
             +  I  GR     + KV +GL   +   +  +DL G+ G +++A+   D++  R D V
Sbjct: 844 THSGLISEGRHFFGSMRKV-YGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 902

Query: 230 LW-NVMVSCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQ 284
           +W   + +C        G IA   L+ LE      Y   SSL  + G    +K+ R+
Sbjct: 903 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRE 959


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/496 (33%), Positives = 276/496 (55%), Gaps = 31/496 (6%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF-------- 212
           D   F+ LL++C++   +  G+++HS I+  G   + F+S+ L++ Y K G         
Sbjct: 61  DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120

Query: 213 -----------------------VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
                                  +E A+++FDE+  R++  WN M++          A++
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALS 180

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +F  M   G   D FT  S++  C  L S   G+++H  ++K  F+L  +V +SL  MY 
Sbjct: 181 LFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYI 240

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K+G++ D  ++   M  + VV+WNT++ G  QNG   E +     M    F PD++T  S
Sbjct: 241 KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVS 300

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +LS+C  L+   + +Q+HA  IK G  + L++ ++LI+ YS+ G +  +++ F   +  D
Sbjct: 301 VLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFD 360

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +V W+S+I AY FHG  +E++E+F +M    +  + + FL +L ACSH GL  +G  YF+
Sbjct: 361 VVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFD 420

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
           LM+  Y + P  EHYTC+ DLLGR G L EA  ++ SMP++P        + ACK+H   
Sbjct: 421 LMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEA 480

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            +A+  +E++++L+P    +Y L+SN++AS R W +V+++RK MRD    K PG SW+E+
Sbjct: 481 EMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLEL 540

Query: 610 AGEIHTFVSSDRSHPQ 625
              +H F   D+SHPQ
Sbjct: 541 KNLVHQFSMGDKSHPQ 556



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 207/442 (46%), Gaps = 47/442 (10%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF--------- 114
           S +S  L+   K G L  GKQ+HS I+  G      + N +L+ Y K   F         
Sbjct: 63  SLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSN 122

Query: 115 ----------------------DDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYF 150
                                 +  +KLFDEM  RNI TWN +I+G+     N      F
Sbjct: 123 MPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 182

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           + M       D  T  S+LR C     +  G+ +H+ +LK GF L+  V S+L  +Y K 
Sbjct: 183 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 242

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G + D  ++   +  R +V WN +++  A N   +  +  +N+M++ G + D  TF S++
Sbjct: 243 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 302

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
           ++C  L +   G+QIH  VIK      + V +SL+ MY+++G ++D+ + F      +VV
Sbjct: 303 SACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVV 362

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ----- 385
            W++M+  +G +G G EA++L   M       +EVT  S+L +C    +  +  +     
Sbjct: 363 LWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLM 422

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           V  Y +K  ++ +  +    ++   + G +  A     S+  +PD + W +++ A   H 
Sbjct: 423 VKKYKLKPRIEHYTCV----VDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLH- 477

Query: 445 LSKESIEVFEKMLSHAVRPDSI 466
             KE+ E+ E++    ++ D +
Sbjct: 478 --KEA-EMAERISEEIIKLDPL 496



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 83/232 (35%), Gaps = 64/232 (27%)

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
           DGR  +K   D        D    + +L SC  L      +QVH+  I +G      I N
Sbjct: 44  DGR--IKQAYDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISN 101

Query: 404 ALINAYSKCGS----------------------IAGALQ---------CFGSVKEPDLVT 432
            L+N YSK G                       I G LQ          F  + E ++ T
Sbjct: 102 HLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIAT 161

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W ++I        +K+++ +F++M      PD      VL  C+       GLR      
Sbjct: 162 WNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCA-------GLR------ 208

Query: 493 SDYHILPDSEHYTC-------LTDLLG--------RVGLLVEAYDLLASMPI 529
               +L   E + C       L+ ++G        + G L +   L+ SMPI
Sbjct: 209 ---SLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPI 257


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/568 (32%), Positives = 312/568 (54%), Gaps = 17/568 (2%)

Query: 89  IMKLGLC-NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GN 145
           + KLG     +S+   ++ ++ K      M ++FD +  R +V W  LI+     G    
Sbjct: 179 VFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDE 238

Query: 146 VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD 205
               F  ML +  + D  T +S+L AC +     +G++LHS  L++G   +  VS  LVD
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVD 298

Query: 206 LYGKC---GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV-FNLMRLEGMKG 261
           +Y K      + +AR VF+ +   +++ W  ++S Y      D  + + F  M  EG++ 
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP 358

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAKNGNIDDACRV 320
           ++ T+SS++ +C  LG    GRQIH   +K +  DL+V V  +LV MYA++G+I++A   
Sbjct: 359 NHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHA 417

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD +  KN+VS++  +     +GDGR        + +        T  S++S+  S+ + 
Sbjct: 418 FDQLYEKNMVSFSGNL-----DGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGML 472

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            + +++HA ++K G  +  +I N+L++ YS+CG +  A Q F  + + ++++WTS+I   
Sbjct: 473 TKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGL 532

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG +  ++E+F  M++  V+P+ + ++ VLSACSH GLV EG  +F +M   + ++P 
Sbjct: 533 AKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPR 592

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EHY C+ DLLGR GL+ +A D +  MP +  +      +GACK H ++ + + AA  ++
Sbjct: 593 MEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVI 652

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           +LEP  P  Y L+SN+YA    W  VAR+R +MRD    K  G SW+ +   IH F + D
Sbjct: 653 QLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGD 712

Query: 621 RSHPQAVHMYAMLCTVFGLMEENNVSGH 648
            SHPQA  +Y  L T   L+ E  V G+
Sbjct: 713 TSHPQAEEIYTKLET---LIREIKVMGY 737



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 224/438 (51%), Gaps = 24/438 (5%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC---KAFDDMEKLFDE 123
           S  L    + G  + G+QLHS  ++LGL +   +   ++ +Y K    ++  +  ++F+ 
Sbjct: 259 SSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNR 318

Query: 124 MRVRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           M   N++ W  L+SG +  G     V   F +ML + +R +HIT++S+L+AC    D + 
Sbjct: 319 MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDS 378

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           GR++H+  +K        V +ALV +Y + G +E+AR  FD++  +++V        ++ 
Sbjct: 379 GRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMV-------SFSG 431

Query: 241 NCLGDGAIAVFNLMRLEGMK--GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           N  GDG    +   ++E M+     FTF SL+++  ++G    G+++H L +K  F  D 
Sbjct: 432 NLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDR 491

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            +  SLV MY++ G + DAC+VFD M   NV+SW +M+ G  ++G    A++L  DM+  
Sbjct: 492 AIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAA 551

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAG 417
              P++VT  ++LS+C    +  E ++      K +G+   +     +++   + G +  
Sbjct: 552 GVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVED 611

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR---PDSIAFLEVLS 473
           AL     +  + D + W +++GA   H     ++++ E   +H ++    D   ++ + +
Sbjct: 612 ALDFINEMPCQVDALVWKTLLGACKTH----NNMDIGEIAANHVIQLEPQDPAPYVLLSN 667

Query: 474 ACSHGGLVSEGLRYFNLM 491
             +  GL  +  R  +LM
Sbjct: 668 LYAEAGLWDQVARIRSLM 685



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 229/459 (49%), Gaps = 20/459 (4%)

Query: 82  GKQLHSHIMKLG--LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV--RNIVTWNTLIS 137
           G+ L  H+++ G  L     + N +L +Y KC A      +FD M V  R++V+W  + S
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 138 GIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEV-GRRLHSFILKVGF- 193
            +   G        F   L + +  +  T  +  +AC  ++   + G  +   + K+GF 
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFW 185

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
           G +  V  AL+D++ K G +   RRVFD +  R +V+W ++++ YA +   D A+ +F  
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G + D +T SS++++C  LGS +LG+Q+H L ++   + D  V+  LVDMYAK+ N
Sbjct: 246 MLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHN 305

Query: 314 ---IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR-DMLQGSFCPDEVTLAS 369
              + +A  VF+ M   NV++W  ++ G+ Q G     V +L   ML     P+ +T +S
Sbjct: 306 GQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSS 365

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L +C +L      RQ+H + +K+ +     + NAL++ Y++ GSI  A   F  + E +
Sbjct: 366 MLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKN 425

Query: 430 LVTWT-SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           +V+++ ++ G    +      IE  E  +S      +  F  ++SA +  G++++G R  
Sbjct: 426 MVSFSGNLDGDGRSNTYQDYQIERMELGIS------TFTFGSLISAAASVGMLTKGQRLH 479

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            L +       D      L  +  R G LV+A  +   M
Sbjct: 480 ALSLK-AGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEM 517



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 173/316 (54%), Gaps = 16/316 (5%)

Query: 177 DIEVGRRLHSFILKVGFGL--NCFVSSALVDLYGKCGFVEDARRVFD--EVLCRDLVLWN 232
           DI +GR L   +L+ G  L  +  V+++L+ LY KC  V  AR VFD   V  RDLV W 
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL----GRQIHGL 288
            M SC + N     A+ +F     EG+  + FT  +   +C    +S+L    G  + GL
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQAC---FASELFHLAGGAVLGL 178

Query: 289 VIKQSF-DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           V K  F   DV V  +L+DM+AKNG++    RVFDG+  + VV W  ++  + Q+G   E
Sbjct: 179 VFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDE 238

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           AV+L  DML+  F PD+ TL+S+LS+C  L      +Q+H+ A++ G+++   +   L++
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVD 298

Query: 408 AYSKC---GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV-FEKMLSHAVRP 463
            Y+K     S+  A + F  + + +++ WT+++  Y   G     + + F KML+  +RP
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP 358

Query: 464 DSIAFLEVLSACSHGG 479
           + I +  +L AC++ G
Sbjct: 359 NHITYSSMLKACANLG 374



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 25/294 (8%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++E     H  YS  LK  A  G    G+Q+H+H +K  L +   + N ++ +Y +  + 
Sbjct: 352 LNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSI 411

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY----FRRMLLDNVRLDHITFNSLLR 170
           ++    FD++  +N+V++    SG ++  G    Y      RM L    +   TF SL+ 
Sbjct: 412 EEARHAFDQLYEKNMVSF----SGNLDGDGRSNTYQDYQIERMELG---ISTFTFGSLIS 464

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           A      +  G+RLH+  LK GFG +  + ++LV +Y +CG++ DA +VFDE+   +++ 
Sbjct: 465 AAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVIS 524

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ------ 284
           W  M+S  A +     A+ +F+ M   G+K +  T+ +++++C   G  K G++      
Sbjct: 525 WTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQ 584

Query: 285 -IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
             HGL+ +            +VD+  ++G ++DA    + M  + + + W T++
Sbjct: 585 KHHGLIPRMEH------YACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLL 632



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 6/218 (2%)

Query: 281 LGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMV 336
           LGR + G +++     + D +VA SL+ +Y+K   +  A  VFDGM    +++VSW  M 
Sbjct: 65  LGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMA 124

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC-GSLSISCETRQVHAYAIKNGV 395
               +NG   EA++L  + L+    P+  TL +   +C  S         V     K G 
Sbjct: 125 SCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGF 184

Query: 396 QAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
               +S+  ALI+ ++K G +    + F  + E  +V WT +I  YA  G S E++E+F 
Sbjct: 185 WGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFL 244

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            ML +  +PD      +LSAC+  G    G +  +L +
Sbjct: 245 DMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLAL 282



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 112/216 (51%), Gaps = 8/216 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   +  +A  G L +G++LH+  +K G  +  ++ N ++ +Y +C    D  ++FDEM 
Sbjct: 459 FGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMN 518

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N+++W ++ISG+   G        F  M+   V+ + +T+ ++L AC  A  ++ G+ 
Sbjct: 519 DHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKE 578

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV-SCYA 239
            H  +++   GL   +   + +VDL G+ G VEDA    +E+ C+ D ++W  ++ +C  
Sbjct: 579 -HFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKT 637

Query: 240 LNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
            N +  G IA  ++++LE      Y   S+L    G
Sbjct: 638 HNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAG 673


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 319/565 (56%), Gaps = 12/565 (2%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTW 132
            G    G  LH +++K G     S+QN +L +YV      DME   +LFDEM  ++++ W
Sbjct: 162 LGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDA----DMECARELFDEMHEKDVIAW 217

Query: 133 NTLISGIINCGGNVT--PYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           + +I G +           FR+M+L   +  D +   S+L+AC  + D+  GR +H  ++
Sbjct: 218 SVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVI 277

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             GF  + FV ++L+D+Y KC     A +VF+E+  R+ V WN M+S + LN     A +
Sbjct: 278 HRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQS 337

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           + + MR E ++ D  T  +++  C         + IH ++I++  + + LV ++L+D YA
Sbjct: 338 LISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYA 397

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K   I+ A  VF  M  ++VVSW+TM+ GF   G   EA+ + ++M +    P+ +T+ +
Sbjct: 398 KCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIIN 457

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L +C   +    ++  H  AI+ G  + +++  A+++ YSKCG I  + + F  +   +
Sbjct: 458 LLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKN 517

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +VTW+++I AY  +GL+ E++ +F +M  H ++P+ +  L VL+ACSHGGLV EGL  F 
Sbjct: 518 IVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFK 577

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP--IEPRSDTLGAFIGACKVHG 547
            M+ +  + P  EHY+C+ D+LGR G L  A +++ +MP  ++  +   G+ + AC+ +G
Sbjct: 578 SMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYG 637

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
              L K A  ++LELEPS    Y + S++YA++  W D AR+R + ++     V G S +
Sbjct: 638 LTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLV 697

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAM 632
            I  +   FV+ D SHP++  +++M
Sbjct: 698 HIDNKACRFVAGDGSHPRSDEIFSM 722



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 214/401 (53%), Gaps = 5/401 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISG 138
           + GK LH+ ++K G  +  S+ N ++  Y++C  FD    +F+ M R R+ V+WN LI G
Sbjct: 64  RHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHG 123

Query: 139 IINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G  V    +F    +     +  T   +++AC        G  LH +++K GF   
Sbjct: 124 HLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAI 183

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++L+ +Y     +E AR +FDE+  +D++ W+VM+  Y         + +F  M L
Sbjct: 184 SSVQNSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVL 242

Query: 257 -EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G++ D     S++ +C +      GR +HGLVI + FD D+ V  SL+DMY+K  +  
Sbjct: 243 VPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAG 302

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A +VF+ ++ +N VSWN+M+ GF  N +  EA  L+  M +     DEVTL +IL  C 
Sbjct: 303 SAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICK 362

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                   + +H   I+ G +A   + +ALI+AY+KC  I  A + F  ++  D+V+W++
Sbjct: 363 YFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWST 422

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +I  +A  G   E+I V+++M    V+P+ I  + +L ACS
Sbjct: 423 MISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS 463



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 3/217 (1%)

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMV 336
           S + G+ +H  +IKQ FD    +  S++  Y + G+ D A  VF+ M  +++ VSWN ++
Sbjct: 62  SHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILI 121

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   NG     +    +     F P+  T+  ++ +C  L    +   +H Y IK+G  
Sbjct: 122 HGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFW 181

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           A  S++N+L++ Y     +  A + F  + E D++ W+ +IG Y      +  +++F KM
Sbjct: 182 AISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKM 240

Query: 457 -LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            L   + PD +  + VL AC+    V  G     L+I
Sbjct: 241 VLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVI 277


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 279/526 (53%), Gaps = 49/526 (9%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N ++  Y K   FD+ ++LF  M  +N+V+WN++I+G I          YF+ M   N  
Sbjct: 10  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNT- 68

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
               ++N+++   V+ D +E   RL   + +     N    +A+VD Y K G +E AR +
Sbjct: 69  ---ASWNAMISGLVRYDRVEEASRLFEEMPR----RNVISYTAMVDGYAKIGEIEQARAL 121

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+ +  +++V W VM+S Y  N   D A  +F  M                         
Sbjct: 122 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------------------------- 156

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
                          D +++  T+++  Y K G  D A  +FD +  +++ SWN M+ G+
Sbjct: 157 --------------PDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGY 202

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QNG G EA+KL   ML+    PD  TL S+L++C SL+   E R+ H   +K+G ++ +
Sbjct: 203 AQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRI 262

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           SI NALI  Y KCGSI  +   F  +  PD+V+W ++I A+A HG    ++  F +M S+
Sbjct: 263 SICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSN 322

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V PD I FL +LSAC H G V E L +FN MI  Y I+P  EH+ CL D+L R G + +
Sbjct: 323 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEK 382

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           AY ++  MP E      GA + AC VH ++ L + AA+K++ELEP     Y ++SN+YA+
Sbjct: 383 AYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 442

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              W +V R+R +MR+    K P  SW+EI  ++H F+  D SHP+
Sbjct: 443 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPE 488



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 35/249 (14%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           HS     L   +    LQ+G++ H  ++K G  +++S+ N ++ +Y KC +  D E  F 
Sbjct: 227 HSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFR 286

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           ++   ++V+WN +I+     G        F  M  + V  D ITF SLL AC  A     
Sbjct: 287 QIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAG---- 342

Query: 181 GRRLHSFILKVGFGLNCFVS--------------SALVDLYGKCGFVEDARRVFDEV-LC 225
                    KV   LN F S              + LVD+  + G VE A ++  E+   
Sbjct: 343 ---------KVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFE 393

Query: 226 RDLVLWN-VMVSCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGR 283
            D  +W  ++ +C+    +  G +A   ++ LE    G Y   S++  + G  G      
Sbjct: 394 ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVT--- 450

Query: 284 QIHGLVIKQ 292
           ++ GL+ +Q
Sbjct: 451 RVRGLMREQ 459


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/579 (33%), Positives = 318/579 (54%), Gaps = 19/579 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLIS 137
           L+ G ++H  ++   L     + N +L++Y KC +    +++F +M R RN+++W ++++
Sbjct: 74  LRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW-SIMA 132

Query: 138 GIINCGGNVTP---YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G     GNV     +FR MLL  ++       ++L AC     ++ GR +HS I   GF 
Sbjct: 133 GAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFE 192

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
               V++A++ +YG+CG VE+AR+VFD +    RD+V WN+M+S Y  N  G  AI ++ 
Sbjct: 193 SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQ 252

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+L   + D  T+ SL+++C +     LGR +H  ++    + +V+V  +LV MYAK G
Sbjct: 253 RMQL---RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCG 309

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ----GS---FCPDEV 365
           +  +A  VFD M  ++++SW T++  + +     EA  L + ML+    GS     PD +
Sbjct: 310 SHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDAL 369

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
              +IL++C  +S   + + V   A   G+ +  ++  A++N Y KCG I  A + F +V
Sbjct: 370 AFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAV 429

Query: 426 -KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
              PD+  W ++I  YA  G S E++++F +M    VRPDS +F+ +L ACSH GL  +G
Sbjct: 430 CSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQG 489

Query: 485 LRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
             YF  M ++Y  +  + +H+ C+ DLLGR G L EA + L  +P++P +    + + AC
Sbjct: 490 KSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAAC 549

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           + H  +  AK  A KLL LEP     Y  +SN+YA  + W  VA++RK M +    K  G
Sbjct: 550 RNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERG 609

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            S IEI   +H F + D +HP+   +   L  +   M+E
Sbjct: 610 VSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKE 648



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 253/486 (52%), Gaps = 21/486 (4%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHIT 164
           +Y  C +  D +  FD +  RN+ +W  L++     G +        RM  D VR D +T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV- 223
           F + L +C   + +  G R+H  ++     ++  VS+AL+++Y KCG +  A+RVF ++ 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R+++ W++M   +AL+     A+  F  M L G+K       +++++C +    + GR
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQ 341
            IH  +    F+ ++LVA +++ MY + G +++A +VFD M    ++VVSWN M+  +  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           N  G++A++L + M      PD+VT  S+LS+C S       R +H   + + ++  + +
Sbjct: 241 NDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML---- 457
            NAL++ Y+KCGS   A   F  +++  +++WT+II AY    L  E+  +F++ML    
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 458 ---SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
              S  V+PD++AF+ +L+AC+    + +G +  +   +   +  D    T + +L G+ 
Sbjct: 358 NGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKC 416

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL--LELEPSKPVNYAL 572
           G + EA  +  ++   P      A I    V+   G +  A +    +E+E  +P +++ 
Sbjct: 417 GEIEEARRIFDAVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRPDSFSF 473

Query: 573 VSNVYA 578
           VS + A
Sbjct: 474 VSILLA 479



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 2/275 (0%)

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYA   +  DA   FD +  +N+ SW  +V  F  +G  +E ++ L  M Q    PD VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             + L SCG      +  ++H   + + ++    + NAL+N Y KCGS++ A + F  ++
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 427 EP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
              ++++W+ + GA+A HG   E++  F  ML   ++    A + +LSACS   LV +G 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG- 179

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           R  +  I+      +      +  + GR G + EA  +  +M    R       + +  V
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           H   G       + ++L P K    +L+S   ++E
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAE 274



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 8/217 (3%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           +L  +G+       A +F +  L   A    L+QGK +       GL +  ++   V+++
Sbjct: 354 ELEKNGSSQRVKPDALAFVT-ILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNL 412

Query: 108 YVKCKAFDDMEKLFDEMRVR-NIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHIT 164
           Y KC   ++  ++FD +  R ++  WN +I+     G +      F RM ++ VR D  +
Sbjct: 413 YGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFS 472

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDE 222
           F S+L AC      + G+   + +      +   +     + DL G+ G +++A    ++
Sbjct: 473 FVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEK 532

Query: 223 VLCR-DLVLW-NVMVSCYALNCLGDGAIAVFNLMRLE 257
           +  + D V W +++ +C     L         L+RLE
Sbjct: 533 LPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLE 569


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/569 (31%), Positives = 301/569 (52%), Gaps = 39/569 (6%)

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL 160
           ++L   +    F   ++LFD +   +  T +TLIS     G        +  +    ++ 
Sbjct: 71  RLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKP 130

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
            +  F ++ +AC  + D    + +H   ++ G   + F+ +AL+  YGKC  VE ARRVF
Sbjct: 131 HNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVF 190

Query: 221 DEVLCRDLVLWNVMVSCYALNC-LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           D+++ +D+V W  M SCY +NC L    +AVF  M   G+K +  T SS++ +C  L   
Sbjct: 191 DDLVVKDVVSWTSMSSCY-VNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDL 249

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           K GR IHG  ++     +V V ++LV +YA+  ++  A  VFD M  ++VVSWN ++  +
Sbjct: 250 KSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAY 309

Query: 340 -----------------------------------GQNGDGREAVKLLRDMLQGSFCPDE 364
                                               +NG   +AV++LR M    F P++
Sbjct: 310 FTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQ 369

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +T++S L +C  L      ++VH Y  ++ +   L+   AL+  Y+KCG +  +   F  
Sbjct: 370 ITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDM 429

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           +   D+V W ++I A A HG  +E + +FE ML   ++P+S+ F  VLS CSH  LV EG
Sbjct: 430 ICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEG 489

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L+ FN M  D+ + PD+ HY C+ D+  R G L EAY+ +  MP+EP +   GA +GAC+
Sbjct: 490 LQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACR 549

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           V+ ++ LAK +A KL E+EP+ P NY  + N+  + + W + +  R +M++    K PGC
Sbjct: 550 VYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGC 609

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SW+++   +HTFV  D+++ ++  +Y  L
Sbjct: 610 SWLQVGDRVHTFVVGDKNNMESDKIYNFL 638



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 209/430 (48%), Gaps = 67/430 (15%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           +S +    K     G   + K++H   ++ G+ +   L N ++H Y KCK  +   ++FD
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADD 177
           ++ V+++V+W ++ S  +NCG    P      F  M  + V+ + +T +S+L AC +  D
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCG---LPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKD 248

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           ++ GR +H F ++ G   N FV SALV LY +C  V+ AR VFD +  RD+V WN +++ 
Sbjct: 249 LKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTA 308

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGD----------------------------------- 262
           Y  N   D  +A+F+ M  +G++ D                                   
Sbjct: 309 YFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPN 368

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
             T SS + +C  L S ++G+++H  V +     D+   T+LV MYAK G+++ +  VFD
Sbjct: 369 QITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFD 428

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
            +  K+VV+WNTM++    +G+GRE + L   MLQ    P+ VT   +LS C        
Sbjct: 429 MICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCS------- 481

Query: 383 TRQVHAYAIKNGVQAFLSIEN------------ALINAYSKCGSIAGALQCFGSVK-EPD 429
               H+  ++ G+Q F S+               +++ +S+ G +  A +    +  EP 
Sbjct: 482 ----HSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPT 537

Query: 430 LVTWTSIIGA 439
              W +++GA
Sbjct: 538 ASAWGALLGA 547


>gi|225462555|ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Vitis vinifera]
          Length = 708

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 299/547 (54%), Gaps = 3/547 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  ALK     G L  G+Q+H  I++  +    ++ N ++ +Y K        K+FD ++
Sbjct: 162 FINALKGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQ 221

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            ++I++WNT+ +G+        +  +F +++L  ++ + +TF+ L R C +A D+  G +
Sbjct: 222 DKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQ 281

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H    + G      V+S+L++++ +CG +  A  VFD    + +   N M+S Y LNC 
Sbjct: 282 FHCLAFRFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCH 341

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A+ +F  +   G++ D  TFSS + +C    + KLGRQ+HG ++K  F     V +S
Sbjct: 342 NAEALNLFCNLNGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSS 401

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+  Y   G +DD+   F+G+   ++VSW  M+      G   EA+ LL  + +    PD
Sbjct: 402 LLKCYVGFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPD 461

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
           E    SI + C  ++   +T+ VH+  +K G +A + + +A+I+AY+KCG I  A + F 
Sbjct: 462 EFIFGSIFNCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFD 521

Query: 424 SVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
                 D++ + +++ AYA HGL +E++E FEKM    + P    F+ V+SACSH GLV 
Sbjct: 522 QTSRFRDVILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVE 581

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +G  +F  M  DY + P  ++Y CL DL  R G L +A  ++ +MP  P      + +  
Sbjct: 582 QGDIFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNG 641

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++HG+  L +WAA+KLL+L P     Y L+S VY+ E  W D A++RK M +    K P
Sbjct: 642 CRIHGNKELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDP 701

Query: 603 GCSWIEI 609
           GCSWIEI
Sbjct: 702 GCSWIEI 708



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 185/378 (48%), Gaps = 16/378 (4%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG------GNVTPYFRRMLLDNVRL 160
           +Y KC       K+F EM ++N+V+W  ++SG +  G      G      R  L+ N   
Sbjct: 1   MYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPN--- 57

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
                  + +AC      E+G  +H F LKVG   N FV S+++++Y K G +EDA RVF
Sbjct: 58  -EFALGCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVF 116

Query: 221 DEVLCRDLVL---WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           +   C D ++   WN M+  YA    G  ++ + ++M+ +G+  D FTF + +  C  +G
Sbjct: 117 E---CMDNLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVG 173

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
           +   GRQIHGL+I+        V  SL+DMY KNG    A +VFD +  K+++SWNT+  
Sbjct: 174 NLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFA 233

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
           G  Q  D RE  +    ++     P+ VT + +   CG         Q H  A + G+  
Sbjct: 234 GLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISD 293

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
             S+ ++LIN +S+CG++  A   F S     + T   +I  Y  +  + E++ +F  + 
Sbjct: 294 EASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLN 353

Query: 458 SHAVRPDSIAFLEVLSAC 475
              +  D   F   L AC
Sbjct: 354 GLGLEADECTFSSALEAC 371



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 196/411 (47%), Gaps = 8/411 (1%)

Query: 71  KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIV 130
           K  A  G  + G  +H   +K+G+     + + +L++Y K    +D E++F+ M    + 
Sbjct: 66  KACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMDNLVVG 125

Query: 131 TWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
            WN +I G   C  G         M    + +D  TF + L+ C+   ++  GR++H  I
Sbjct: 126 CWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQIHGLI 185

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           ++   G +  V ++L+D+Y K G    A +VFD +  +D++ WN +   +A    GD A 
Sbjct: 186 IQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTV---FAGLSQGDDAR 242

Query: 249 AV---FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            +   F+ + L G+K +  TFS L   CG       G Q H L  +     +  V +SL+
Sbjct: 243 EIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSSLI 302

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           +M+++ G +  AC VFD    K++ + N M+ G+  N    EA+ L  ++       DE 
Sbjct: 303 NMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADEC 362

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T +S L +C         RQ+H   +K+G  +   + ++L+  Y   G +  + + F  V
Sbjct: 363 TFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGV 422

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +  DLV+W ++I A    G S E+I +  ++     +PD   F  + + C+
Sbjct: 423 ERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCA 473



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%)

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K G +    +VF  M  KN+VSW  +V G  QNG+    + +  +M++    P+E  
Sbjct: 1   MYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFA 60

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L  +  +C +L        VH +A+K G++    + ++++N Y+K G I  A + F  + 
Sbjct: 61  LGCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMD 120

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
              +  W ++IG YA      ES+++   M    +  D+  F+  L  C   G ++ G +
Sbjct: 121 NLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQ 180

Query: 487 YFNLMI 492
              L+I
Sbjct: 181 IHGLII 186


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 180/552 (32%), Positives = 294/552 (53%), Gaps = 9/552 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +  A K  A     + G+ +H   +  G      +QN ++ +Y+ C      E +F 
Sbjct: 108 HLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFG 167

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            MR R +V+WN +I+G +  G        F  M  D V +D  T  S+L AC QA D+  
Sbjct: 168 AMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNT 227

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSC 237
           GR +H  +   G G    V +AL+D+YGKC  +EDARRVFD   C+   D+V W  M+  
Sbjct: 228 GRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDH--CKHDKDVVSWTAMIGA 285

Query: 238 YALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           Y LN     AI++   M + G    +  T   L+++C ++ S K  +  H L I+     
Sbjct: 286 YVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKS 345

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D+ V T+L+D YA+ G +    R+     +    +WN  + G+  +G  ++A++L + M+
Sbjct: 346 DIAVETALIDAYARCGKMK-LMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRMI 404

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
             S  PD  T+ASIL +    +   E + +H + +  G      I   LI+ YSK G + 
Sbjct: 405 AESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  + E D+V WT+II  Y+ HG ++ +I ++++M+    +P+++    +L ACS
Sbjct: 465 AAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACS 524

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H G++ EG++ F  M + + ++P+ EHY+CL D+LGR G + EA+ L+  MP EP +   
Sbjct: 525 HAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVW 584

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GAC +H ++   + AA++L +L+P    +Y L+ N+YA+   W DV  +R+MM + 
Sbjct: 585 GALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVER 644

Query: 597 CDHKVPGCSWIE 608
              K PG S +E
Sbjct: 645 GLLKEPGSSLVE 656



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 35/294 (11%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+AV++ MR      D+ TF     +C  L   + GR +H   +   F  D  V  +L+ 
Sbjct: 96  ALAVYSAMR----AFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALIS 151

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY   G++  A  VF  M  + VVSWN ++ G  +NG    A+++  +M       D  T
Sbjct: 152 MYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRAT 211

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + S+L +C         R VH      G+  +++++NALI+ Y KC S+  A + F   K
Sbjct: 212 VVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCK 271

Query: 427 -EPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVSEG 484
            + D+V+WT++IGAY  +  + E+I +  +ML S A  P+ +  + +LSAC+        
Sbjct: 272 HDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACAS------- 324

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGL---------LVEAYDLLASMPI 529
                        +P  +H  C   L  R+GL         L++AY     M +
Sbjct: 325 -------------MPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKL 365



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I ES     +  +  L   A+   L++GK +H  ++ LG      +   ++ VY K    
Sbjct: 404 IAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDL 463

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRAC 172
           D    LF  +  +++V W T+I+G    G   T    + RM+    + + +T  +LL AC
Sbjct: 464 DAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYAC 523

Query: 173 VQADDIEVGRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
             A  I+ G ++   +  V G   N    S LVD+ G+ G +E+A R+  ++
Sbjct: 524 SHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDM 575


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 319/565 (56%), Gaps = 12/565 (2%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME---KLFDEMRVRNIVTW 132
            G    G  LH +++K G     S+QN +L +YV      DME   +LFDEM  ++++ W
Sbjct: 162 LGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDA----DMECARELFDEMHEKDVIAW 217

Query: 133 NTLISGIINCGGNVT--PYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           + +I G +           FR+M+L   +  D +   S+L+AC  + D+  GR +H  ++
Sbjct: 218 SVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVI 277

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             GF  + FV ++L+D+Y KC     A +VF+E+  R+ V WN M+S + LN     A +
Sbjct: 278 HRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQS 337

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           + + MR E ++ D  T  +++  C         + IH ++I++  + + LV ++L+D YA
Sbjct: 338 LISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYA 397

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K   I+ A  VF  M  ++VVSW+TM+ GF   G   EA+ + ++M +    P+ +T+ +
Sbjct: 398 KCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIIN 457

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +L +C   +    ++  H  AI+ G  + +++  A+++ YSKCG I  + + F  +   +
Sbjct: 458 LLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKN 517

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +VTW+++I AY  +GL+ E++ +F +M  H ++P+ +  L VL+ACSHGGLV EGL  F 
Sbjct: 518 IVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFK 577

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP--IEPRSDTLGAFIGACKVHG 547
            M+ +  + P  EHY+C+ D+LGR G L  A +++ +MP  ++  +   G+ + AC+ +G
Sbjct: 578 SMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYG 637

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
              L K A  ++LELEPS    Y + S++YA++  W D AR+R + ++     V G S +
Sbjct: 638 LTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLV 697

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAM 632
            I  +   FV+ D SHP++  +++M
Sbjct: 698 HIDNKACRFVAGDGSHPRSDEIFSM 722



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 214/401 (53%), Gaps = 5/401 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLISG 138
           + GK LH+ ++K G  +  S+ N ++  Y++C  FD    +F+ M R R+ V+WN LI G
Sbjct: 64  RHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHG 123

Query: 139 IINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            ++ G  V    +F    +     +  T   +++AC        G  LH +++K GF   
Sbjct: 124 HLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAI 183

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V ++L+ +Y     +E AR +FDE+  +D++ W+VM+  Y         + +F  M L
Sbjct: 184 SSVQNSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVL 242

Query: 257 -EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
             G++ D     S++ +C +      GR +HGLVI + FD D+ V  SL+DMY+K  +  
Sbjct: 243 VPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAG 302

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A +VF+ ++ +N VSWN+M+ GF  N +  EA  L+  M +     DEVTL +IL  C 
Sbjct: 303 SAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICK 362

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
                   + +H   I+ G +A   + +ALI+AY+KC  I  A + F  ++  D+V+W++
Sbjct: 363 YFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWST 422

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +I  +A  G   E+I V+++M    V+P+ I  + +L ACS
Sbjct: 423 MISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS 463



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 3/217 (1%)

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-TAKNVVSWNTMV 336
           S + G+ +H  +IKQ FD    +  S++  Y + G+ D A  VF+ M  +++ VSWN ++
Sbjct: 62  SHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILI 121

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G   NG     +    +     F P+  T+  ++ +C  L    +   +H Y IK+G  
Sbjct: 122 HGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFW 181

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
           A  S++N+L++ Y     +  A + F  + E D++ W+ +IG Y      +  +++F KM
Sbjct: 182 AISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKM 240

Query: 457 -LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            L   + PD +  + VL AC+    V  G     L+I
Sbjct: 241 VLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVI 277


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 304/548 (55%), Gaps = 22/548 (4%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNV 158
            ++V +  +A  D  +LFD M  RN+VTW  L++G      N  P      F  ML    
Sbjct: 79  AMYVPLLHRAARDARRLFDGMPERNVVTWTALVTGYTL---NSQPALGLEVFVEMLEMGR 135

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
              H T  + L AC+ + D+++G+++H + +K G      + ++L  LY K G ++ A R
Sbjct: 136 YPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALR 195

Query: 219 VFDEVLCRDLVLWNVMVSCYALN--CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
            F  +  ++++ W  M+S  A +  C+  G +++F  M ++G+  + FT +S+++ CGT 
Sbjct: 196 AFWRIPEKNVITWTTMISACAEDEECVELG-MSLFIDMLMDGVMPNEFTLTSVMSLCGTR 254

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
               LG+Q+     K   + ++ V  S + +Y + G  D+A R+F+ M   ++++WN M+
Sbjct: 255 LDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMI 314

Query: 337 VGFGQNGD-----------GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            G+ Q  D           G +A+ + RD+ +    PD  T +SILS C ++    +  Q
Sbjct: 315 SGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ 374

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           +HA  IK+G  + + + +AL+N Y+KCG I  A + F  +     VTWTS+I  Y+ HG 
Sbjct: 375 IHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQ 434

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
            +E+I++FE+M    VRP+ I F+ +LSACS+ GLV E   YF++M  +Y I P  +HY 
Sbjct: 435 PQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYG 494

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
           C+ D+  R+G + +A+  +     EP      + +  C+ HG++ LA +AA+KLLEL+P 
Sbjct: 495 CMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPK 554

Query: 566 KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
               Y L+ N+Y S   W DVAR+RK+M+      +   SWI I  +++ F ++DR+HPQ
Sbjct: 555 GIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQ 614

Query: 626 AVHMYAML 633
           A  +Y +L
Sbjct: 615 ATELYQLL 622



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 200/404 (49%), Gaps = 24/404 (5%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII- 140
           GKQ+H + +K G  +  S+ N +  +Y K  + D   + F  +  +N++TW T+IS    
Sbjct: 158 GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE 217

Query: 141 --NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
              C       F  ML+D V  +  T  S++  C    D+ +G+++ +F  K+G   N  
Sbjct: 218 DEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLP 277

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-----------LNCLGDGA 247
           V ++ + LY + G  ++A R+F+++    ++ WN M+S YA               G  A
Sbjct: 278 VKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQA 337

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  ++   MK D FTFSS+++ C  + + + G QIH   IK  F  DV+V ++LV+M
Sbjct: 338 LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNM 397

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           Y K G I DA + F  M  +  V+W +M+ G+ Q+G  +EA++L  +M      P+E+T 
Sbjct: 398 YNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITF 457

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            S+LS+C    +  E         K   ++  +     +I+ + + G +  A   F  +K
Sbjct: 458 VSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA---FSFIK 514

Query: 427 ----EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
               EP+   W+S++     HG  + +    +K+L   ++P  I
Sbjct: 515 RTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE--LKPKGI 556



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 143/282 (50%), Gaps = 17/282 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GKQ+ +   K+G    L ++N  +++Y++    D+  +LF++M   +I+TWN +ISG
Sbjct: 257 LNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISG 316

Query: 139 IINC-------------GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
                            G      FR +    ++ D  TF+S+L  C     +E G ++H
Sbjct: 317 YAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIH 376

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           +  +K GF  +  V+SALV++Y KCG ++DA + F E+  R  V W  M+S Y+ +    
Sbjct: 377 AQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQ 436

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TS 303
            AI +F  MRL G++ +  TF SL+++C   G  +       + +K+ + ++ +V     
Sbjct: 437 EAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDM-MKKEYCIEPVVDHYGC 495

Query: 304 LVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGD 344
           ++DM+ + G ++DA           N   W+++V G   +G+
Sbjct: 496 MIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 537



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 7/156 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L V +    L+QG+Q+H+  +K G  + + + + ++++Y KC    D  K F EM 
Sbjct: 356 FSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP 415

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R  VTW ++ISG    G        F  M L  VR + ITF SLL AC  A  +E    
Sbjct: 416 TRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAE- 474

Query: 184 LHSF-ILKVGFGLNCFVS--SALVDLYGKCGFVEDA 216
            H F ++K  + +   V     ++D++ + G VEDA
Sbjct: 475 -HYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA 509


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 310/599 (51%), Gaps = 47/599 (7%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
            ++Q L + AKFG L+  + L   ++K    +     N +L  Y K  +  +++  FD M
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFS----WNALLSAYAKSGSIQNLKATFDRM 115

Query: 125 RVRNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIE 179
             R+ V++NT I+G     GN  P      F+RM  +       T  S+L A  Q  D+ 
Sbjct: 116 PFRDSVSYNTTIAGF---SGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLR 172

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G+++H  I+   F  N F+ +AL D+Y KCG +E AR +FD +  ++LV WN+M+S YA
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N   +  I + + MRL G   D  T S+++ +                           
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA--------------------------- 265

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
                   Y + G +D+A RVF     K++V W  M+VG+ +NG   +A+ L  +ML   
Sbjct: 266 --------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEH 317

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PD  TL+S++SSC  L+     + VH  +I  G+   L + +ALI+ YSKCG I  A 
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDAR 377

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   ++V+W ++I   A +G  K+++E+FE ML    +PD++ F+ +LSAC H  
Sbjct: 378 SVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCN 437

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            + +G  YF+ + + + + P  +HY C+ +LLGR G + +A  L+ +M  +P        
Sbjct: 438 WIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTL 497

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +  C   G I  A+ AA  L EL+P+  V Y ++SN+YAS   W DVA +R +M+     
Sbjct: 498 LSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVK 557

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           K  G SWIEI  E+H F S DR+HP++  +Y  L  + G ++E   + + N++  ++ E
Sbjct: 558 KFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGE 616


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/590 (29%), Positives = 330/590 (55%), Gaps = 16/590 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ AL   ++ G L++GK +H+  +  GL   + + N ++ +Y +C    +  ++FD   
Sbjct: 117 YAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTE 176

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-- 181
            R+ V+WN+L+SG +  G +  +   F  M    + L+     S+++ C   D    G  
Sbjct: 177 ERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIA 236

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +H  ++K G   + F++SA+VD+Y K G + +A  +F  VL  ++V++N M++     
Sbjct: 237 EAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGL--- 293

Query: 242 CLGDGAI---------AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           C  + A+         ++++ ++  GM+   FTFSS++ +C   G  + G+QIHG V+K 
Sbjct: 294 CRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKH 353

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            F  D  + ++L+D+Y  +  ++D  R F  +  ++VV+W  M+ G  QN     A+ L 
Sbjct: 354 CFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALF 413

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
            ++L     PD  T++S++++C SL++     Q+  +A K+G   F ++ N+ I+ Y++ 
Sbjct: 414 HELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARS 473

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G++  A+Q F  ++  D+V+W++II ++A HG ++++++ F +M+   V P+ I FL VL
Sbjct: 474 GNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVL 533

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +ACSHGGLV EGLRY+ +M  +Y + P  +H TC+ DLLGR G L +A   +        
Sbjct: 534 TACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDE 593

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
                + +G+C++H  +   +  A++++EL+P+    Y  + N+Y         +++R +
Sbjct: 594 PVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGELSLGSKIRDL 653

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           M++    K PG SWIE+   IH+FV+ D+SHP+   +Y  L  +   +++
Sbjct: 654 MKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSKIDK 703



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 217/437 (49%), Gaps = 16/437 (3%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME-- 118
           S  +FY   L+  A    L Q   +H HI +      L L+N +L  Y +  A D  +  
Sbjct: 11  SLDAFYLHHLRSCAS---LPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQAR 67

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           +L DEM  RN V++N LI      G    ++  +        V+ D  T+ + L AC +A
Sbjct: 68  RLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRA 127

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
             ++ G+ +H+  +  G     FVS++LV +Y +CG + +ARRVFD    RD V WN +V
Sbjct: 128 GRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLV 187

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSK-LGRQIHGLVIKQS 293
           S Y      +  + VF LMR   M  + F   S++  C G  GS + +   +HG V+K  
Sbjct: 188 SGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAG 247

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG------RE 347
            D D+ +A+++VDMYAK G + +A  +F  +   NVV +N M+ G  ++         RE
Sbjct: 248 LDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVRE 307

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407
           A+ L  ++      P E T +S++ +C         +Q+H   +K+  Q    I +ALI+
Sbjct: 308 ALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALID 367

Query: 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA 467
            Y     +    +CF SV + D+VTWT++I     + L + ++ +F ++L   ++PD   
Sbjct: 368 LYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFT 427

Query: 468 FLEVLSACSHGGLVSEG 484
              V++AC+   +V  G
Sbjct: 428 ISSVMNACASLAVVRTG 444


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 315/568 (55%), Gaps = 24/568 (4%)

Query: 79  LQQGKQLHSHIMKLGL------CNKL----SLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           + Q KQ+H+ +++ GL       +K+    SLQ      Y +         +F ++    
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARL--------VFSQIPNPT 52

Query: 129 IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
             T N++I G    N       +++ M++  +  D  TF SL ++C  + +   G+++H 
Sbjct: 53  SYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHC 109

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
              K+GF  + +  + L+++Y  CG +  AR+VFD++  + +V W  M+  +A     + 
Sbjct: 110 HSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNE 169

Query: 247 AIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
           A+ +F+ +M+ E +K +  T  +++ +C       + ++IH  + +  F   V++ T L+
Sbjct: 170 AVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLM 229

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D+Y K G +  A  +FD    KN+ SWN M+ G  ++ +  EA+ L R+M       D+V
Sbjct: 230 DVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKV 289

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+AS+L +C  L      + +HAY  K  +   +++  AL++ Y+KCGSI  A+Q F  +
Sbjct: 290 TMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEM 349

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            E D++TWT++I   A  G ++ +++ F++M    V+PD+I F+ VL+ACSH G V EG+
Sbjct: 350 PEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGI 409

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
            +FN M   Y I P  EHY  L D+LGR G + EA +L+ SMP+ P    LG  +GAC++
Sbjct: 410 SHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRI 469

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           HG++  A+ AA++LLE++P     Y L+SN+Y S + W +  R R++M +    K PGCS
Sbjct: 470 HGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCS 529

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            IE+ G +H FV  D SH Q+  +  ML
Sbjct: 530 QIEVHGVVHEFVKGDSSHRQSSEINEML 557



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 8/217 (3%)

Query: 76  FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTL 135
            G L+ GK LH++I K  +   ++L   ++ +Y KC + +   ++F EM  ++++TW  L
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTAL 360

Query: 136 ISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G+  CG   N   YF  M +  V+ D ITF  +L AC  A  ++ G   H   +   +
Sbjct: 361 ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGIS-HFNSMSDTY 419

Query: 194 GLNCFVS--SALVDLYGKCGFVEDARRVFDEV-LCRD-LVLWNVMVSCYALNCLGDGAIA 249
           G+   +     LVD+ G+ G + +A  +   + +  D  VL  ++ +C     L     A
Sbjct: 420 GIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERA 479

Query: 250 VFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQI 285
              L+ ++    G Y   S++  S      +K  R++
Sbjct: 480 AKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTREL 516


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 305/561 (54%), Gaps = 8/561 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMK-LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L VS +   L  G+  H+ I+K L       L N ++++Y K    +  + + +    R+
Sbjct: 15  LAVSVRSSLL--GRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRS 72

Query: 129 IVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +VTW  LI+G +  G  V+   +F  ML D VR +  TF  +L+A         G++LH+
Sbjct: 73  VVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHA 132

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG-D 245
             +K G   + FV  ++ D+Y K GF+ DA +VFDE+  R+L  WN  +S   L+    D
Sbjct: 133 LAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPED 192

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             IA   L+R+ G K D  TF + +N+C        G Q+HG +I+  +  +V V+  L+
Sbjct: 193 SVIAFIELLRVGG-KPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLI 251

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D Y K G ++ +  VFD M  +N VSW++++  + QN +  +A  L     +    P + 
Sbjct: 252 DFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDF 311

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            ++S+L +C  LS     R V A A+K  V+  + + +AL++ Y KCGSI  A Q F ++
Sbjct: 312 MVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAM 371

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEG 484
            E +LV+W +++G YA  G + +++ + E+M S A + P  ++ +  LSACS  G +  G
Sbjct: 372 PERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTG 431

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           ++ F  M   Y + P  EHY CL DLLGR G++  AYD +  MP  P     GA +GAC+
Sbjct: 432 MKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACR 491

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +HG   L K AAEKL EL+P    N+ ++SN++A+   W +V  +R  M++    K  G 
Sbjct: 492 MHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGF 551

Query: 605 SWIEIAGEIHTFVSSDRSHPQ 625
           SWI +   IH F + D+SH +
Sbjct: 552 SWITVDSRIHMFQAKDKSHEK 572



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 4/152 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A    ++ G+ + +  +K  +   + + + ++ +Y KC + D+ E+ F+ M  
Sbjct: 314 SSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPE 373

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRR 183
           RN+V+WN L+ G  + G           M     +   +++    L AC +A D++ G +
Sbjct: 374 RNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMK 433

Query: 184 L-HSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           +  S   + G        + LVDL G+ G VE
Sbjct: 434 IFESMKERYGVEPGPEHYACLVDLLGRAGMVE 465


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/566 (32%), Positives = 306/566 (54%), Gaps = 2/566 (0%)

Query: 62  AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLF 121
           AH+F       +   G     +Q+H   +K    + + + + +++ Y K     +  KLF
Sbjct: 111 AHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLF 170

Query: 122 DEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           D M  RN+V+W T+ISG  +          F  M L    L+   F S+L A V  + ++
Sbjct: 171 DRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVD 230

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G+++H  ++K G      V +ALV +Y KCG +  +  +F+    ++ + W+ +++ Y+
Sbjct: 231 SGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYS 290

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                  A+ +F+ M   G     FT   ++ +C  + + + G+Q HG ++K  ++  + 
Sbjct: 291 QAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIY 350

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
            AT+LVDMYAK G   DA + FD +   ++V W +++ G+ QNG   EA+ +   M    
Sbjct: 351 TATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRK 410

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P+E+T+AS+L +C +L+   + +Q+HA  IK G+   LSI +AL   Y+KCGS+   +
Sbjct: 411 ILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGV 470

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  + + D+V+W ++I   + +G  +E++E+FE+M     +PD I F+ VLSACSH G
Sbjct: 471 LIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMG 530

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           +V  G  YFN+M  ++ ++P  EHY C+ D+L R G L EA + + S  I+         
Sbjct: 531 IVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRIL 590

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC+ H +  L  +A EKL+EL   +   Y L+S++Y +     DV R+R+MM+     
Sbjct: 591 LPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVR 650

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           K  GCSWIE+   +H FV  D+ HPQ
Sbjct: 651 KETGCSWIELKSHVHVFVVGDQIHPQ 676



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 252/476 (52%), Gaps = 20/476 (4%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMK---LGLCNKLSLQNQVLHVYVKCKAFDDMEKL 120
           SFY+  ++ + +   L++G+ LH+HI+K   L  CN L+  N ++  Y KC      + +
Sbjct: 9   SFYNLLIQYADQKS-LKKGQILHAHIIKIPYLSSCNYLA--NNLIKFYAKCGHLHGAKLV 65

Query: 121 FDEMRVRNIVTWNTLISGIINCGGN----VTPYFRRMLLDNVRLDHITFNSLLRACVQAD 176
           F+ ++ +N+V++N LI G+ + G      V   FRRM+ +N+  D  TF  +  A     
Sbjct: 66  FENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAA--- 122

Query: 177 DIEVG-----RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
            + +G     R++H   +K     + FV S+LV+ Y K G V +AR++FD +  R+LV W
Sbjct: 123 -LNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSW 181

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
             M+S YA   +   A+ VF LMRL     + F F+S++++         G+Q+H +V+K
Sbjct: 182 TTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVK 241

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
                 V V  +LV MYAK GN++ +  +F+  + KN ++W+ ++ G+ Q GD  +A+KL
Sbjct: 242 NGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKL 301

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
              M    F P E TL  +L +C  ++   E +Q H Y +K+G +  +    AL++ Y+K
Sbjct: 302 FSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAK 361

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
            G    A + F  + EPDLV WTSII  Y  +G ++E++ ++ +M    + P+ +    V
Sbjct: 362 FGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASV 421

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           L ACS+   + +G +     I  Y + P+    + L+ +  + G L E   +   M
Sbjct: 422 LKACSNLAALEQGKQIHARTI-KYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM 476


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 272/465 (58%), Gaps = 5/465 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D IT++ L++ C+    +  G+R+H  I   G+    F+++ L+++Y K   +E+A+ +F
Sbjct: 284 DSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLF 343

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           D++  R++V W  M+S Y+   L D A+ +   M  +G+  + FTFSS++ +C  L   K
Sbjct: 344 DKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK 403

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
              Q+H  ++K   + DV V ++L+D+Y+K G + +A +VF  M   + V WN+++  F 
Sbjct: 404 ---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFA 460

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q+ DG EA+ L + M +  F  D+ TL S+L +C SLS+    RQ H + +K      L 
Sbjct: 461 QHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLI 518

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           + NAL++ Y KCGS+  A   F  + + D+++W+++I   A +G S E++ +FE M    
Sbjct: 519 LNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQG 578

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            +P+ I  L VL ACSH GLV+EG  YF  M + Y I P  EHY C+ DLLGR   L + 
Sbjct: 579 PKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDM 638

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
             L+  M  EP   T    + AC+   ++ LA +AA+++L+L+P     Y L+SN+YA  
Sbjct: 639 VKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAIS 698

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           + W DVA +R+ M+     K PGCSWIE+  +IH F+  D+SHPQ
Sbjct: 699 KRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQ 743



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 212/389 (54%), Gaps = 31/389 (7%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS+ +K     G +++GK++H HI   G   K  L N ++++YVK    ++ + LFD+M 
Sbjct: 288 YSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMP 347

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+W T+IS   N   N         M  D V  +  TF+S+LRAC +  D+   ++
Sbjct: 348 ERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQ 404

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LHS+I+KVG   + FV SAL+D+Y K G + +A +VF E++  D V+WN +++ +A +  
Sbjct: 405 LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSD 464

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           GD A+ ++  MR  G   D  T +S++ +C +L   +LGRQ H  V+K  FD D+++  +
Sbjct: 465 GDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNA 522

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY K G+++DA  +F+ M  K+V+SW+TM+ G  QNG   EA+ L   M      P+
Sbjct: 523 LLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPN 582

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYSK 411
            +T+  +L +C            HA  +  G   F S+ N             +++   +
Sbjct: 583 HITILGVLFACS-----------HAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGR 631

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
              +   ++    +  EPD+VTW +++ A
Sbjct: 632 AEKLDDMVKLIHEMNCEPDVVTWRTLLDA 660



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 3/238 (1%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ V + M   G+  D  T+S L+  C   G+ + G+++H  +    +     +   L++
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY K   +++A  +FD M  +NVVSW TM+  +        A++LL  M +    P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            +S+L +C  L    + +Q+H++ +K G+++ + + +ALI+ YSK G +  AL+ F  + 
Sbjct: 389 FSSVLRACERLY---DLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMM 445

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             D V W SII A+A H    E++ +++ M       D      VL AC+   L+  G
Sbjct: 446 TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG 503



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 103/215 (47%), Gaps = 12/215 (5%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
            S  +  L+       L+ G+Q H H++K      L L N +L +Y KC + +D + +F+
Sbjct: 484 QSTLTSVLRACTSLSLLELGRQAHVHVLKFD--QDLILNNALLDMYCKCGSLEDAKFIFN 541

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            M  +++++W+T+I+G+   G ++     F  M +   + +HIT   +L AC  A  +  
Sbjct: 542 RMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNE 601

Query: 181 GR---RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV- 235
           G    R  + +  +  G   +    ++DL G+   ++D  ++  E+ C  D+V W  ++ 
Sbjct: 602 GWYYFRSMNNLYGIDPGREHY--GCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLD 659

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSL 269
           +C A   +     A   +++L+    G Y   S++
Sbjct: 660 ACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNI 694


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 298/531 (56%), Gaps = 23/531 (4%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQAD 176
           K FD     ++ +WN+LI+ +   G +      F  M   +++ +  TF   +++C    
Sbjct: 40  KYFDRT---DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D+  G++ H   L  GF  + FVSSAL+D+Y KCG + +AR +FDE+  R++V W  +++
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKG---------DYFTFSSLVNSCGTLGSSKLGRQIHG 287
            Y  N     A+ VF     E  +G         D     S++++C  + +  +   +HG
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
           + IK   D  + V  +L+D YAK G +  + +VFD M  K+VVSWN+M+  + QNG   +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 348 AVKLLRDMLQ-GSFCPDEVTLASILSSC---GSLSIS-CETRQVHAYAIKNGVQAFLSIE 402
           A ++   ML+ G    +EVTL+++L +C   G+L +  C    +H   IK G    + + 
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMC----LHDQVIKMGYVNNVIMA 332

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            ++I+ Y KCG    A   F  +KE ++ +WT++I  Y  HG ++E+++VF +M+   V+
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+ I F+ VL+ACSH G + EG R+FN M  +Y++ P  EHY C+ DLLGR G + EAY+
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYN 452

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
           L+ SM +       G+ + AC++H  + LA+ +A +L +L+PS    Y L++N+YA    
Sbjct: 453 LIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGR 512

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           W DV R+R +++D    K PG S +E+ G +H F+  D+ HPQ   +Y  L
Sbjct: 513 WKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYL 563



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 198/398 (49%), Gaps = 22/398 (5%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S +  A+K  +    L  GKQ H   +  G  + L + + ++ +Y KC    +   LFDE
Sbjct: 83  STFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDE 142

Query: 124 MRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDN---------VRLDHITFNSLLRAC 172
           +  RNIVTW +LI+G +  +        F+  L +            +D +   S+L AC
Sbjct: 143 IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            +  +  V   +H   +KVG      V + L+D Y KCG V  +R+VFD++  +D+V WN
Sbjct: 203 SRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWN 262

Query: 233 VMVSCYALNCLGDGAIAVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
            M++ YA N L   A  VF+ +++  G K +  T S+L+ +C   G+ ++G  +H  VIK
Sbjct: 263 SMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIK 322

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
             +  +V++ATS++DMY K G  + A   FDGM  KNV SW  M+ G+G +G  REA+ +
Sbjct: 323 MGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDV 382

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGVQAFLSIENALI 406
              M+     P+ +T  S+L++C       E         H Y ++ GV+ +      ++
Sbjct: 383 FYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHY----GCMV 438

Query: 407 NAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           +   + G I  A     S+K   D V W S++ A   H
Sbjct: 439 DLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIH 476


>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 295/536 (55%), Gaps = 3/536 (0%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  G+Q+H  I++  +    ++ N ++ +Y K        K+FD ++ ++I++WNT+ 
Sbjct: 197 GNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVF 256

Query: 137 SGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +G+        +  +F +++L  ++ + +TF+ L R C +A D+  G + H    + G  
Sbjct: 257 AGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGIS 316

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
               V+S+L++++ +CG +  A  VFD    + +   N M+S Y LNC    A+ +F  +
Sbjct: 317 DEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNL 376

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G++ D  TFSS + +C    + KLGRQ+HG ++K  F     V +SL+  Y   G +
Sbjct: 377 NGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLL 436

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           DD+   F+G+   ++VSW  M+      G   EA+ LL  + +    PDE    SI + C
Sbjct: 437 DDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCC 496

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTW 433
             ++   +T+ VH+  +K G +A + + +A+I+AY+KCG I  A + F       D++ +
Sbjct: 497 AGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILF 556

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
            +++ AYA HGL +E++E FEKM    + P    F+ V+SACSH GLV +G  +F  M  
Sbjct: 557 NTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNL 616

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           DY + P  ++Y CL DL  R G L +A  ++ +MP  P      + +  C++HG+  L +
Sbjct: 617 DYGMDPSPDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNKELGE 676

Query: 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
           WAA+KLL+L P     Y L+S VY+ E  W D A++RK M +    K PGCSWIEI
Sbjct: 677 WAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCSWIEI 732



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 225/480 (46%), Gaps = 24/480 (5%)

Query: 18  PLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTH----SAHSF------YS 67
           PLS L     +  T    +   H     +  LRN   ++ S      S+ SF       S
Sbjct: 21  PLSILQTKYSKGSTVPFVSKLNHLSLFTNKMLRNQHHVYTSKSCNCSSSLSFRNDPTALS 80

Query: 68  QALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
            AL  SA    +  G Q+H+ I+KLG CN +  QN ++ +Y KC       K+F EM ++
Sbjct: 81  TALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMK 140

Query: 128 NIVTWNTLISGIINCG------GNVTPYFRRMLLDN-VRLDHITFN-SLLRACVQADDIE 179
           N+V+W  ++SG +  G      G      R  L+ N   L  +T   + L  C+   ++ 
Sbjct: 141 NLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVGNLN 200

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            GR++H  I++   G +  V ++L+D+Y K G    A +VFD +  +D++ WN +   +A
Sbjct: 201 FGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTV---FA 257

Query: 240 LNCLGDGAIAV---FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
               GD A  +   F+ + L G+K +  TFS L   CG       G Q H L  +     
Sbjct: 258 GLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISD 317

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           +  V +SL++M+++ G +  AC VFD    K++ + N M+ G+  N    EA+ L  ++ 
Sbjct: 318 EASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLN 377

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                 DE T +S L +C         RQ+H   +K+G  +   + ++L+  Y   G + 
Sbjct: 378 GLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLD 437

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            + + F  V+  DLV+W ++I A    G S E+I +  ++     +PD   F  + + C+
Sbjct: 438 DSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCA 497


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 279/526 (53%), Gaps = 49/526 (9%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N ++  Y K   FD+ ++LF  M  +N+V+WN++I+G I          YF+ M   N  
Sbjct: 82  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNT- 140

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
               ++N+++   V+ D +E   RL   + +     N    +A+VD Y K G +E AR +
Sbjct: 141 ---ASWNAMISGLVRYDRVEEASRLFEEMPR----RNVISYTAMVDGYAKIGEIEQARAL 193

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+ +  +++V W VM+S Y  N   D A  +F  M                         
Sbjct: 194 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP------------------------ 229

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
                          D +++  T+++  Y K G  D A  +FD +  +++ SWN M+ G+
Sbjct: 230 ---------------DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGY 274

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QNG G EA+KL   ML+    PD  TL S+L++C SL+   E R+ H   +K+G ++ +
Sbjct: 275 AQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRI 334

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           SI NALI  Y KCGSI  +   F  +  PD+V+W ++I A+A HG    ++  F +M S+
Sbjct: 335 SICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSN 394

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V PD I FL +LSAC H G V E L +FN MI  Y I+P  EH+ CL D+L R G + +
Sbjct: 395 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEK 454

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           AY ++  MP E      GA + AC VH ++ L + AA+K++ELEP     Y ++SN+YA+
Sbjct: 455 AYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 514

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              W +V R+R +MR+    K P  SW+EI  ++H F+  D SHP+
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPE 560



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 9/236 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           HS     L   +    LQ+G++ H  ++K G  +++S+ N ++ +Y KC +  D E  F 
Sbjct: 299 HSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFR 358

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-E 179
           ++   ++V+WN +I+     G        F  M  + V  D ITF SLL AC  A  + E
Sbjct: 359 QIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHE 418

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWN-VMVSC 237
                +S I            + LVD+  + G VE A ++  E+    D  +W  ++ +C
Sbjct: 419 SLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAAC 478

Query: 238 YALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +    +  G +A   ++ LE    G Y   S++  + G  G      ++ GL+ +Q
Sbjct: 479 HVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVT---RVRGLMREQ 531



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 31/203 (15%)

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
             RQ H L IK     DV      +   A+ GNI  A ++FD M  ++ VSWN+++ G+ 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYW 89

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---------GSLSISCETRQVHAY-A 390
           +NG   E+ +L   M   +     V+  S+++ C              +   R   ++ A
Sbjct: 90  KNGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNA 145

Query: 391 IKNGVQAFLSIE-----------------NALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           + +G+  +  +E                  A+++ Y+K G I  A   F  + + ++V+W
Sbjct: 146 MISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSW 205

Query: 434 TSIIGAYAFHGLSKESIEVFEKM 456
           T +I  Y  +G   E+  +FE+M
Sbjct: 206 TVMISGYVENGKFDEAENLFEQM 228


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 292/564 (51%), Gaps = 48/564 (8%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  YVK         LF++M  +++V+WN ++SG    G        F +ML+ N  
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKN-- 183

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL---NCFVSSALVDLYGKCGFVEDA 216
              I++N LL A VQ   IE  RRL  F  K+ + +   NC +       Y +   ++DA
Sbjct: 184 --EISWNGLLSAYVQNGRIEDARRL--FDSKMDWEIVSWNCLMGG-----YVRKKRLDDA 234

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R +FD +  RD + WN+M++ YA N L   A  +F  + +     D F ++++V+     
Sbjct: 235 RSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSGFVQN 290

Query: 277 GS-SKLGRQIHGLVIKQSFDLDVLVA--------------------------TSLVDMYA 309
           G   +  R    +  K     + ++A                           ++V  YA
Sbjct: 291 GMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYA 350

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           + GNID A  +FD M  ++ +SW  M+ G+ Q+G   EA+ L   M +     +   LA 
Sbjct: 351 QCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALAC 410

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
            LSSC  ++     +Q+H   +K G Q      NAL+  Y KCGSI  A   F  + E D
Sbjct: 411 ALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKD 470

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +V+W ++I  YA HG  KE++ +FE M    ++PD +  + VLSACSH GLV +G+ YFN
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFN 529

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            M  +Y I  +++HYTC+ DLLGR G L EA +L+ SMP  P + T GA +GA ++HG  
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT 589

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            L + AAEK+ E+EP     Y L+SN+YA+   W +V  +R  MRD    KVPG SW+EI
Sbjct: 590 ELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEI 649

Query: 610 AGEIHTFVSSDRSHPQAVHMYAML 633
             + H F   D SHP+A  +YA L
Sbjct: 650 QNKTHIFTVGDCSHPEAERIYAYL 673



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 60/304 (19%)

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQ 284
           D+V WN  +S Y      + A++VFN MR    +    T++++++  G L ++K    R+
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMIS--GYLSNNKFDCARK 112

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
               V ++  D D++    ++  Y KNGN+  A  +F+ M  K+VVSWN M+ GF QNG 
Sbjct: 113 ----VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA K+   ML                                  +KN +       N 
Sbjct: 169 VEEARKIFDQML----------------------------------VKNEISW-----NG 189

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++AY + G I  A + F S  + ++V+W  ++G Y       ++  +F++M    VR D
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM---PVR-D 245

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I++  +++  +  GL+SE  R F  +      + D   +T +     + G+L EA  + 
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTAMVSGFVQNGMLDEATRIF 300

Query: 525 ASMP 528
             MP
Sbjct: 301 EEMP 304



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 177/443 (39%), Gaps = 93/443 (20%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VF+++  RDL+ WNVM+S Y  N     A A+FN M     + D  +++++++    
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQ 165

Query: 276 LGSSKLGRQI------------HGL---------------VIKQSFDLDVLVATSLVDMY 308
            G  +  R+I            +GL               +     D +++    L+  Y
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM------------- 355
            +   +DDA  +FD M  ++ +SWN M+ G+ QNG   EA +L  ++             
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 356 --LQGSFCPDEVTLASILSSCGSLSISCETR-QVHAYAIKNGVQAF-------LSIENAL 405
             +Q     +   +   +     +S +      V +  I+   + F        S  N +
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTM 345

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +  Y++CG+I  A   F  + + D ++W ++I  YA  G S+E++ +F KM       + 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 466 IAFLEVLSACS-----------HGGLVSEGLR--YF--NLMISDYHILPD-SEHYTCLTD 509
            A    LS+C+           HG LV  G +  Y   N +++ Y       E +    D
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED 465

Query: 510 L--------------LGRVGLLVEAYDLLASMP--IEPRSDTLGAFIGACKVHGSIGLAK 553
           +                R G   EA  L  SM   I+P   TL   + AC   G +    
Sbjct: 466 ITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLV---- 521

Query: 554 WAAEKLLELEPSKPVNYALVSNV 576
              +K +E   S   NY + +N 
Sbjct: 522 ---DKGMEYFNSMYQNYGITANA 541



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 48/238 (20%)

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D D++     +  Y + G  + A  VF+GM  ++ V++N M+ G+  N     A K+   
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M      PD                    R + ++             N +++ Y K G+
Sbjct: 117 M------PD--------------------RDLISW-------------NVMLSGYVKNGN 137

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           ++ A   F  + E D+V+W +++  +A +G  +E+ ++F++ML      + I++  +LSA
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSA 193

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
               G + +  R F+  + D+ I+     + CL     R   L +A  L   MP+  +
Sbjct: 194 YVQNGRIEDARRLFDSKM-DWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVRDK 246



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A+   L+ GKQLH  ++K G        N +L +Y KC + ++   +F+++  ++
Sbjct: 411 ALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKD 470

Query: 129 IVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR-LH 185
           IV+WNT+I+G      G      F  M +  ++ D +T   +L AC     ++ G    +
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGLVDKGMEYFN 529

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           S     G   N    + ++DL G+ G +++A
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 317/597 (53%), Gaps = 72/597 (12%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL    + G ++ G++ H  ++K+GL +   +   ++ +Y KC   D   +++D+M   +
Sbjct: 119 ALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLD 178

Query: 129 IVTWNTLISGIINCGGNVTPYFRRMLLDNV--RLDHITFNSLLRACVQADDIEVGRRLHS 186
             T N LIS     G  V  +   M + N+  R +H T++++L  C     I+ G++LH+
Sbjct: 179 AATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHA 238

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN-------------- 232
            ++K+ +     V +AL+ LY KCG +E+A  VF+ +  R+++ W               
Sbjct: 239 HVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKK 298

Query: 233 ----------------------VMVSC------------YALNCLGDGAIAVFNLMRL-- 256
                                 V+ SC             +    G   +++F L ++  
Sbjct: 299 ALKQFSMMRESGIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIE 358

Query: 257 EG-----MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
           EG     ++ + F   S++ +CG L   + G  +H +++K SF+ D  + ++L+ MY+K 
Sbjct: 359 EGNKPTSLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKC 418

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G+++ ACRVFD +   NVVSWNT++ GF Q             ML   FCP  VT++S+L
Sbjct: 419 GHVEKACRVFDWI--PNVVSWNTLIAGFSQ-------------MLDQGFCPSSVTISSLL 463

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +C +++     +++H YA+  GV+  + + +AL++ Y+KCG I+ A   F  + E + V
Sbjct: 464 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTV 523

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           TW S+I  YA HG   E+IE+F +M     + D + F  VL+ACSH G+V  G   F  M
Sbjct: 524 TWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKM 583

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
              Y I P  EHY C+ DLLGR G L EAYDL+ +MP+EP     GA +GAC+ HG+I L
Sbjct: 584 QEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIEL 643

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           A+ AAE L ELEP  P +  L+SN+YA    W + A+++KMM+     K PGCSWIE
Sbjct: 644 AEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 700



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 217/472 (45%), Gaps = 88/472 (18%)

Query: 59  THSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME 118
           T   H  YS  L V      +Q+GKQLH+H++K+   ++ ++ N +L +Y KC   ++ E
Sbjct: 210 TRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAE 269

Query: 119 KLFDEMRVRNIVTWNTLISG--------------------------------IINCGGNV 146
            +F+ +  RNI++W   I+G                                + +CG ++
Sbjct: 270 IVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCDL 329

Query: 147 TPY--------------------FRRMLLD-----NVRLDHITFNSLLRACVQADDIEVG 181
             +                     R+M+ +     ++R +     S+L+AC    D   G
Sbjct: 330 GKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRRTG 389

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
             +H+ ILK  F  + ++ SAL+ +Y KCG VE A RVFD +   ++V WN +       
Sbjct: 390 ENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWI--PNVVSWNTL------- 440

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
                 IA F+ M  +G      T SSL+ +C  + + + G++IHG  +    + DV V 
Sbjct: 441 ------IAGFSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR 494

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           ++LVDMYAK G I +A  +F  M  +N V+WN+++ G+  +G   EA++L   M +    
Sbjct: 495 SALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTK 554

Query: 362 PDEVTLASILSSCG-----SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
            D +T  ++L++C       L  S   +    Y I+  ++ +      +++   + G ++
Sbjct: 555 LDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYA----CMVDLLGRAGKLS 610

Query: 417 GALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH--AVRPDS 465
            A     ++  EPD   W +++GA   HG    +IE+ E    H   + P+S
Sbjct: 611 EAYDLIKAMPVEPDKFVWGALLGACRNHG----NIELAEVAAEHLFELEPES 658



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 205/438 (46%), Gaps = 76/438 (17%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           S L  C +   +E+GRR H F++K+G G + FV ++L+D+Y KCG V+ A RV+D++   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D    N ++S YA N     A  VF  +   G + +++T+S+++  CGT+ + + G+Q+H
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
             V+K  +  +  V  +L+ +Y+K G +++A  VF+ +  +N++SW   + GF Q+GD +
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFK 297

Query: 347 EAVK--------------------------------------------------LLRDML 356
           +A+K                                                  LLR M+
Sbjct: 298 KALKQFSMMRESGIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMI 357

Query: 357 Q-----GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
           +      S  P++  L SIL +CG LS       +H   +KN  ++   I +ALI  YSK
Sbjct: 358 EEGNKPTSLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSK 417

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CG +  A + F  +  P++V+W ++I               F +ML     P S+    +
Sbjct: 418 CGHVEKACRVFDWI--PNVVSWNTLIAG-------------FSQMLDQGFCPSSVTISSL 462

Query: 472 LSACSHGGLVSEG--LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
           L AC++   +  G  +  + ++I    +  D    + L D+  + G + EA  L   MP 
Sbjct: 463 LPACTNVANLRHGKEIHGYAMVIG---VEKDVYVRSALVDMYAKCGYISEAKILFYMMP- 518

Query: 530 EPRSDTLGAFIGACKVHG 547
           E  + T  + I     HG
Sbjct: 519 ERNTVTWNSLIFGYANHG 536



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G     + FS+L + CG  G  +LGR+ H  V+K     D  V TSL+DMYAK G +D A
Sbjct: 109 GFPHRQYVFSAL-SFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            RV+D MT+ +  + N ++  + +NG   +A ++   +      P+  T +++L+ CG++
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S   E +Q+HA+ +K    +  ++ NAL+  YSKCG +  A   F ++ + ++++WT+ I
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASI 287

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             +  HG  K++++ F  M    + P+   F  VL++C
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 1/159 (0%)

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P    + S LS CG        R+ H + +K G+ +   +  +LI+ Y+KCG +  A++ 
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           +  +   D  T   +I AYA +G   ++ +VF ++ +   RP+   +  +L+ C     +
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
            EG +  +  +     L ++     L  L  + G++ EA
Sbjct: 231 QEG-KQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEA 268


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/549 (34%), Positives = 303/549 (55%), Gaps = 9/549 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM 124
           Y+  L+   K      G  LH+H++K G L ++    + +         F     LFD +
Sbjct: 56  YASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDAL 115

Query: 125 RVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
             ++++ W ++ISG +      T    F +ML   +  +  T +S+L+AC Q +++ +G+
Sbjct: 116 PFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGK 175

Query: 183 RLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
            LH+ +   GF   N  V+ AL+D+YG+   V+DAR+VFDE+   D V W  ++S  A N
Sbjct: 176 TLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARN 235

Query: 242 CLGDGAIAVFNLMRLEGM--KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                A+ VF  M   G+  + D FTF +L+N+CG LG  ++GR++HG V+      +V 
Sbjct: 236 DRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVF 295

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V +SL+DMY K G +  A  VFDG+  KN V+   M+  +  NG+    + L+R+     
Sbjct: 296 VESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWRS-- 353

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D  +  +I+ +C  L+   +  +VH   ++ G    + +E+AL++ Y+KCGS+  A 
Sbjct: 354 -MVDVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAY 412

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + F  ++  +L+TW ++IG +A +G  +E +E+FE+M+   VRPD I+F+ VL ACSH G
Sbjct: 413 RLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLFACSHNG 472

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV +G RYF+LM  +Y I P   HYTC+ D+LGR  L+ EA  LL S             
Sbjct: 473 LVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLLESADCRYDHSRWAVL 532

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           +GAC        A+  A+K+++LEP   ++Y L+ N+Y +   W +   +RK+M +    
Sbjct: 533 LGACTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIRKLMEERGVK 592

Query: 600 KVPGCSWIE 608
           KVPG SWIE
Sbjct: 593 KVPGKSWIE 601



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 219/453 (48%), Gaps = 20/453 (4%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG-FVEDARR 218
           L  + + SLL+AC +A    +G  LH+ +LK GF  + FV+++L+ LY K       AR 
Sbjct: 51  LKPVVYASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARA 110

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           +FD +  +D++ W  ++S +        A+ +F  M  + ++ + FT SS++ +C  L +
Sbjct: 111 LFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLEN 170

Query: 279 SKLGRQIHGLVIKQSFDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
             LG+ +H +V  + F   + +VA +L+DMY ++  +DDA +VFD +   + V W  ++ 
Sbjct: 171 LHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVIS 230

Query: 338 GFGQNGDGREAVKLLRDMLQGSFC--PDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
              +N   REAV++   M  G      D  T  ++L++CG+L      R+VH   +  G+
Sbjct: 231 TLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGM 290

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +  + +E++L++ Y KCG +  A   F  ++E + V  T+++G Y  +G     + +  +
Sbjct: 291 KGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVRE 350

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
             S     D  +F  ++ ACS    V +G    +          D    + L DL  + G
Sbjct: 351 WRSMV---DVYSFGTIIRACSGLAAVRQG-NEVHCQYVRRGGWRDVVVESALVDLYAKCG 406

Query: 516 LLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
            +  AY L + M  E R+  T  A IG    +G         E++++ E  +P   + V+
Sbjct: 407 SVDFAYRLFSRM--EARNLITWNAMIGGFAQNGRGQEGVELFEEMVK-EGVRPDWISFVN 463

Query: 575 NVYA--------SERCWFDVARLRKMMRDNCDH 599
            ++A          R +FD+ R    +R    H
Sbjct: 464 VLFACSHNGLVDQGRRYFDLMRREYGIRPGVVH 496


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/600 (31%), Positives = 318/600 (53%), Gaps = 28/600 (4%)

Query: 53  GTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK 112
           G +    +  H+ +   LK  A    L  G+ LH +I+++GL   L   N ++++Y K +
Sbjct: 98  GMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLR 157

Query: 113 AFDD-------MEKLFDEM--RVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHI 163
                        ++ DEM  R R++ T + L+    N G  V+            ++  
Sbjct: 158 FLKKSGRQRLGASQVLDEMTERTRSVRTASVLVG---NQGRKVSD-----------IEAF 203

Query: 164 TFNSLLRAC-VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
            ++   R+   +A  +E+  +  S   ++     C +   + D+      V+  R++F+ 
Sbjct: 204 NYDVSCRSREFEAQVLEIDYKPRSEYREME---ACNLGQQIKDISHSMS-VDSVRKIFEM 259

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282
           +  +DLV WN +++  A N L    + +   M    +K D FT SS++           G
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           ++IHG  I+Q  D +V VA+SL+DMYAK   + D+ RVF  +T ++ +SWN+++ G  QN
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   E +K  R ML     P   + +SI+ +C  L+     +Q+H Y  +NG    + I 
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 439

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           ++L++ Y+KCG+I  A Q F  ++  D+V+WT++I   A HG + ++IE+FE+M +  + 
Sbjct: 440 SSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIE 499

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+ +AF+ VL+ACSH GLV E  +YFN M  D+ I P  EHY  ++DLLGR G L EAYD
Sbjct: 500 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYD 559

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
            +  MPI P        + AC+VH ++ +A+  A ++LE++P     Y L++N+Y++ R 
Sbjct: 560 FICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARR 619

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           W + A+ R  +R     K P CSWIE+  +++ F++ D SHP    +   +  +  LME+
Sbjct: 620 WKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEK 679



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 220/478 (46%), Gaps = 33/478 (6%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           Q +QLH+ ++K    + L   + +L +Y       D  +LF+ +     + W ++I    
Sbjct: 26  QAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYT 84

Query: 141 NCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
           + G    P+     F  ML   +  DH  F S+L+AC    D+ +G  LH +I++VG   
Sbjct: 85  SHG---LPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDF 141

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + +  +AL+++Y K  F++ + R               + +   L+ + +   +V     
Sbjct: 142 DLYTGNALMNMYSKLRFLKKSGR-------------QRLGASQVLDEMTERTRSVRTASV 188

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL---VDMYAKNG 312
           L G +G   +     N   +  S +   Q+  +  K   +   + A +L   +   + + 
Sbjct: 189 LVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSM 248

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           ++D   ++F+ M  K++VSWNT++ G  +NG   E + ++R+M   +  PD  TL+S+L 
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
                    + +++H  +I+ G+ A + + ++LI+ Y+KC  +  + + F  + E D ++
Sbjct: 309 LIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR---YFN 489
           W SII     +GL  E ++ F +ML   ++P S +F  ++ AC+H   +  G +   Y  
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 428

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
               D +I   S     L D+  + G +  A  +   M +     +  A I  C +HG
Sbjct: 429 RNGFDENIFIASS----LVDMYAKCGNIRTARQIFDRMRLRDMV-SWTAMIMGCALHG 481



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 162/398 (40%), Gaps = 45/398 (11%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           NSLLR  +        ++LH+ +LK     +    S L+ +Y     + D+ R+F+ +  
Sbjct: 12  NSLLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTLHF 70

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
              + W  ++ CY  + L   ++  F  M   G+  D+  F S++ +C  L    LG  +
Sbjct: 71  PPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESL 130

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR-------VFDGMTAKNVVSWNTMVVG 338
           HG +I+   D D+    +L++MY+K   +  + R       V D MT +   S  T  V 
Sbjct: 131 HGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTER-TRSVRTASVL 189

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA- 397
            G  G     ++                         +  +SC +R+  A  ++   +  
Sbjct: 190 VGNQGRKVSDIEAF-----------------------NYDVSCRSREFEAQVLEIDYKPR 226

Query: 398 --FLSIE----NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
             +  +E       I   S   S+    + F  + E DLV+W +II   A +GL  E++ 
Sbjct: 227 SEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLT 286

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY--TCLTD 509
           +  +M    ++PDS     VL   +    +S+G       I       D+E Y  + L D
Sbjct: 287 MVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQG---LDAEVYVASSLID 343

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           +  +   +V++Y +  ++  E    +  + I  C  +G
Sbjct: 344 MYAKCTRVVDSYRVF-TLLTERDGISWNSIIAGCVQNG 380



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA-YSKCGSIAGALQCF 422
           E  + S+L +  S+    + +Q+HA  +K   QA      +L+ + YS    +  +L+ F
Sbjct: 8   EALVNSLLRNPLSIKSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINLLHDSLRLF 65

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS------ 476
            ++  P  + W S+I  Y  HGL  +S+  F  ML+  + PD   F  VL AC+      
Sbjct: 66  NTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLN 125

Query: 477 -----HGGLVSEGLRY 487
                HG ++  GL +
Sbjct: 126 LGESLHGYIIRVGLDF 141


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 314/578 (54%), Gaps = 6/578 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           ++  A++G L+ G QLH   +K  L N L + N +L++Y    + +    LF+ +   + 
Sbjct: 269 IQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDA 328

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV-GRRLHS 186
             WN++IS  I  G        F +M L+ ++ D  T   +L  C   +D  + GR LH+
Sbjct: 329 ALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHA 388

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             +K G  L+ ++ +AL+ +Y K   +  A+ VF+++   D++ WN M+S +A +     
Sbjct: 389 HAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAK 448

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A  +F +M    +K + +T  SL+  C        GR IHG  IK   +++  + TSL +
Sbjct: 449 AFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTE 508

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY   G+   A  +F     +++VSWN+++  + +N +  +A+ L   M+     P+ VT
Sbjct: 509 MYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMIS-ELEPNSVT 567

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFL--SIENALINAYSKCGSIAGALQCFGS 424
           + +IL+SC  L+     + +HAY  +  V   +  S+ NA I  Y++CG +  A + F +
Sbjct: 568 IINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCT 627

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++   +V+W ++I  Y  HG  +++   F +ML    +P++++F  VLSACSH GL   G
Sbjct: 628 LQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTG 687

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L+ F+ M+ D+ I P   HY C+ DLLGR G   EA   + SMPIEP +    A + +C+
Sbjct: 688 LQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQ 747

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +  +  L +    KL+ELEPS P N+ L+SN+YA+   W +V ++RK +R+    K PG 
Sbjct: 748 IKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGT 807

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           SWI I  ++H F ++D  HPQ+  +Y  L ++  L+ +
Sbjct: 808 SWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRD 845



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 233/448 (52%), Gaps = 16/448 (3%)

Query: 39  KHDRSVLSS--QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN 96
           K+D ++LS+  Q+ + G   +S     +     LK   +   +  G ++HS I  L L N
Sbjct: 39  KNDHAILSTYTQMESLGITPDS-----ATMPLVLKACGRLNAIGNGVRIHSCIRGLDLIN 93

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYFRRML 154
            + +   ++  Y KC    +  K+F EM  R++V+WN LISG + C         F  M 
Sbjct: 94  DVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMK 153

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFV 213
              +  +  T  +LL AC +  ++ +G+ +H + L+ G F ++ +V +ALV  Y +   V
Sbjct: 154 KAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV 213

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVN 271
             + RVF  +L R++V WN +++ + LN +GD   A+ +++ M +EG+K D  T   ++ 
Sbjct: 214 L-SHRVFSLMLVRNIVSWNAIITGF-LN-VGDCAKALKLYSSMLIEGIKFDAVTMLVVIQ 270

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C   G  +LG Q+H L IK +   D+ +  +L++MY+ NG+++ +  +F+ +   +   
Sbjct: 271 ACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAAL 330

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI-SCETRQVHAYA 390
           WN+M+  +   G   EA+ L   M       D  T+A +LS C  L+  S   R +HA+A
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHA 390

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +K+G++    + NAL++ Y K   I  A   F  ++  D+++W ++I A+A      ++ 
Sbjct: 391 MKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAF 450

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           E+F  M    ++ +S   + +L+ C  G
Sbjct: 451 ELFLMMCESEIKFNSYTIVSLLAFCKDG 478


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 314/578 (54%), Gaps = 6/578 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           ++  A++G L+ G QLH   +K  L N L + N +L++Y    + +    LF+ +   + 
Sbjct: 269 IQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDA 328

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV-GRRLHS 186
             WN++IS  I  G        F +M L+ ++ D  T   +L  C   +D  + GR LH+
Sbjct: 329 ALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHA 388

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
             +K G  L+ ++ +AL+ +Y K   +  A+ VF+++   D++ WN M+S +A +     
Sbjct: 389 HAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAK 448

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A  +F +M    +K + +T  SL+  C        GR IHG  IK   +++  + TSL +
Sbjct: 449 AFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTE 508

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY   G+   A  +F     +++VSWN+++  + +N +  +A+ L   M+     P+ VT
Sbjct: 509 MYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMIS-ELEPNSVT 567

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFL--SIENALINAYSKCGSIAGALQCFGS 424
           + +IL+SC  L+     + +HAY  +  V   +  S+ NA I  Y++CG +  A + F +
Sbjct: 568 IINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCT 627

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++   +V+W ++I  Y  HG  +++   F +ML    +P++++F  VLSACSH GL   G
Sbjct: 628 LQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTG 687

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L+ F+ M+ D+ I P   HY C+ DLLGR G   EA   + SMPIEP +    A + +C+
Sbjct: 688 LQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQ 747

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +  +  L +    KL+ELEPS P N+ L+SN+YA+   W +V ++RK +R+    K PG 
Sbjct: 748 IKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGT 807

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           SWI I  ++H F ++D  HPQ+  +Y  L ++  L+ +
Sbjct: 808 SWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRD 845



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 233/448 (52%), Gaps = 16/448 (3%)

Query: 39  KHDRSVLSS--QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN 96
           K+D ++LS+  Q+ + G   +S     +     LK   +   +  G ++HS I  L L N
Sbjct: 39  KNDHAILSTYTQMESLGITPDS-----ATMPLVLKACGRLNAIGNGVRIHSFIRGLDLIN 93

Query: 97  KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYFRRML 154
            + +   ++  Y KC    +  K+F EM  R++V+WN LISG + C         F  M 
Sbjct: 94  DVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMK 153

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFV 213
              +  +  T  +LL AC +  ++ +G+ +H + L+ G F ++ +V +ALV  Y +   V
Sbjct: 154 KAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV 213

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGD--GAIAVFNLMRLEGMKGDYFTFSSLVN 271
             + RVF  +L R++V WN +++ + LN +GD   A+ +++ M +EG+K D  T   ++ 
Sbjct: 214 L-SHRVFSLMLVRNIVSWNAIITGF-LN-VGDCAKALKLYSSMLIEGIKFDAVTMLVVIQ 270

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +C   G  +LG Q+H L IK +   D+ +  +L++MY+ NG+++ +  +F+ +   +   
Sbjct: 271 ACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAAL 330

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI-SCETRQVHAYA 390
           WN+M+  +   G   EA+ L   M       D  T+A +LS C  L+  S   R +HA+A
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHA 390

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +K+G++    + NAL++ Y K   I  A   F  ++  D+++W ++I A+A      ++ 
Sbjct: 391 MKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAF 450

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHG 478
           E+F  M    ++ +S   + +L+ C  G
Sbjct: 451 ELFLMMCESEIKFNSYTIVSLLAFCKDG 478


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 304/587 (51%), Gaps = 25/587 (4%)

Query: 61  SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEK 119
           S H FY   L+       L   K +HS +   G L +      +++ +Y K         
Sbjct: 23  SLHHFYDHLLQCCTSLTTL---KLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSART 79

Query: 120 LFDEM--------RVRNIVTWNTLISGIINCGGNVTP-----YFRRMLLDNVRLDHITFN 166
           LFD          +  N    NT++    N G +        Y +RM    V +++ T+ 
Sbjct: 80  LFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRM---GVGVNNFTYP 136

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
            +L+ C        G  +H  +++ GFG + FV +ALVD+Y KCG + DA  VFD +L R
Sbjct: 137 FVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIR 196

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
           D+V W  M++ Y        A+ +F  M+ EG  GD  T  S+ ++ G LG  ++   +H
Sbjct: 197 DVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVH 256

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           G  +   F  DV V  S+V MYAK GN++ A  VFD M  +N +SWN+M+ G+ QNG   
Sbjct: 257 GYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPT 316

Query: 347 EAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           +A+ L   M Q S C P+ VT   ++S+C  L      R++H + I + +    ++ NA+
Sbjct: 317 DALSLFNQM-QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAI 375

Query: 406 INAYSKCGSIAGALQCFGSVK--EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
           ++ Y KCG +  A++ F + +  E D+ +W  +I  Y  HG  KE++E+F +M    V P
Sbjct: 376 MDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 435

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           + I F  +LSACSH GL+ EG + F  M +   + P+ +HY C+ D+LGR G L EA+ L
Sbjct: 436 NDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRL 494

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  +P  P  +  GA + AC++HG+  L + AA  L +LEP     Y L+SN+YA+   W
Sbjct: 495 IKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKW 554

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            +V  +R+ M+     K    S IE   E+H F ++D+S P    +Y
Sbjct: 555 KEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVY 601


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 180/536 (33%), Positives = 296/536 (55%), Gaps = 36/536 (6%)

Query: 159 RLDHI----TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           R DH      +++L+ ACV+   +E+GRR+H+      F    F+S+ L+D+Y KCG + 
Sbjct: 80  RTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLV 139

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYA----------------------LNCLGDG------ 246
           DA+ +FDE+  RDL  WN M+  YA                       N    G      
Sbjct: 140 DAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQ 199

Query: 247 ---AIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
              A+ +F +M R E    + FT SS + +   +   +LG++IHG +I+   +LD +V +
Sbjct: 200 PREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWS 259

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+D+Y K G++D+A  +FD M  ++VVSW TM+    ++G   E   L RD++Q    P
Sbjct: 260 ALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRP 319

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E T A +L++C   +     ++VH Y +  G        +AL++ YSKCG+   A + F
Sbjct: 320 NEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVF 379

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + +PDLV+WTS+I  YA +G   E++  FE +L    +PD + ++ VLSAC+H GLV 
Sbjct: 380 NEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVD 439

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +GL YF+ +   + ++  ++HY C+ DLL R G   EA +++ +MP++P      + +G 
Sbjct: 440 KGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGG 499

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C++HG++ LAK AA+ L E+EP  P  Y  ++N+YA+   W +VA +RK M +    K P
Sbjct: 500 CRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKP 559

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           G SWIEI  ++H F+  D SHP+   ++  L  +   ++E       N +  +++E
Sbjct: 560 GKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEE 615



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 229/482 (47%), Gaps = 70/482 (14%)

Query: 55  IHESTHSAHS-FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           +H + H   +  YS  +    +   L+ G+++H+H         + + N++L +Y KC +
Sbjct: 78  LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGS 137

Query: 114 -------FDDM------------------------EKLFDEMRVRNIVTWNTLISGII-- 140
                  FD+M                         KLFDEM  R+  +WN  ISG +  
Sbjct: 138 LVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTH 197

Query: 141 NCGGNVTPYFRRMLL-DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           N        FR M   +    +  T +S L A      + +G+ +H ++++    L+  V
Sbjct: 198 NQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVV 257

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEG 258
            SAL+DLYGKCG +++AR +FD++  RD+V W  M+  C+      +G +   +LM+  G
Sbjct: 258 WSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQ-SG 316

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++ + +TF+ ++N+C    +  LG+++HG ++   +D      ++LV MY+K GN   A 
Sbjct: 317 VRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVAR 376

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
           RVF+ M   ++VSW +++VG+ QNG   EA+     +LQ    PD+VT   +LS+C    
Sbjct: 377 RVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSAC---- 432

Query: 379 ISCETRQVHAYAIKNGVQAFLSI--ENALINAYSKCGSIAGALQCFGSVKE--------- 427
                   HA  +  G++ F SI  ++ L++       +   L   G  KE         
Sbjct: 433 -------THAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMP 485

Query: 428 --PDLVTWTSIIGAYAFHG---LSKESIEVFEKMLSHAVRPDSIA-FLEVLSACSHGGLV 481
             PD   W S++G    HG   L+K + +       + + P++ A ++ + +  ++ GL 
Sbjct: 486 VKPDKFLWASLLGGCRIHGNLELAKRAAKAL-----YEIEPENPATYITLANIYANAGLW 540

Query: 482 SE 483
           SE
Sbjct: 541 SE 542



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 154/314 (49%), Gaps = 8/314 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ GK++H ++++  L     + + +L +Y KC + D+   +FD+M+ R++V+W T+I  
Sbjct: 236 LRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHR 295

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G     +  FR ++   VR +  TF  +L AC       +G+ +H +++  G+   
Sbjct: 296 CFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPG 355

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            F  SALV +Y KCG    ARRVF+E+   DLV W  ++  YA N   D A+  F L+  
Sbjct: 356 SFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQ 415

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            G K D  T+  ++++C   G    G +  H +  K            ++D+ A++G   
Sbjct: 416 SGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFK 475

Query: 316 DACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLRDMLQGSFCPDEVTLASIL 371
           +A  + D M  K +   W +++ G   +G+    + A K L + ++       +TLA+I 
Sbjct: 476 EAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYE-IEPENPATYITLANIY 534

Query: 372 SSCGSLSISCETRQ 385
           ++ G  S     R+
Sbjct: 535 ANAGLWSEVANVRK 548



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 7/151 (4%)

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q    +EAV+LL    +    P     ++++++C         R+VHA+   +     + 
Sbjct: 67  QQKRVKEAVELLH---RTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVF 123

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I N L++ Y+KCGS+  A   F  +   DL +W ++I  YA  G  +++ ++F++M    
Sbjct: 124 ISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM---- 179

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            + D+ ++   +S         E L  F +M
Sbjct: 180 PQRDNFSWNAAISGYVTHNQPREALELFRVM 210


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 306/572 (53%), Gaps = 2/572 (0%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S  S  LK   +   +  G+ LH++ +K  L + + + + +L +Y +    +   ++F E
Sbjct: 103 SVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSE 162

Query: 124 MRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M  RN VTW  +I+G+++ G       YF  M       D  TF   L+AC     ++ G
Sbjct: 163 MPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYG 222

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           +++H+ ++  GF    +V+++L  +Y +CG + D   +F+ +  RD+V W  ++  Y   
Sbjct: 223 KQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRI 282

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              + A+  F  MR   +  +  TF+++ ++C +L     G Q+H  V     +  + V+
Sbjct: 283 GHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVS 342

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            S++ MY+  G +D A  +F GM  ++++SW+T++ G+ Q G G EA K    M Q    
Sbjct: 343 NSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPK 402

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P +  LAS+LS  G++++    RQVHA A   G++   ++ + LIN YSKCG+I  A + 
Sbjct: 403 PTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKI 462

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F      D+V+ T++I  YA HG SKE+I++FEK L     PDS+ F+ VL+AC+H G +
Sbjct: 463 FEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQL 522

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
             G  YFNLM   Y++ P  EHY C+ DLL R G L EA  ++  M  +         + 
Sbjct: 523 DLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLI 582

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           ACK  G I   + AAE++LEL+P+       ++N+Y+S     + A +RK M+     K 
Sbjct: 583 ACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKE 642

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           PG S I+I   +  FVS DR HP +  +Y +L
Sbjct: 643 PGWSSIKIKDCVSAFVSGDRFHPLSEDIYNIL 674



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 213/436 (48%), Gaps = 10/436 (2%)

Query: 118 EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYF----RRMLLDNVRLDHITFNSLLRACV 173
            ++FD+M  R+IV+W  +I G +    +          R++   V  D    + +L+AC 
Sbjct: 54  RQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACG 113

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           Q+ +I  G  LH++ +K     + FV S+L+D+Y + G +E + RVF E+  R+ V W  
Sbjct: 114 QSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTA 173

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +++           +  F+ M       D FTF+  + +C  L   K G+QIH  VI + 
Sbjct: 174 IITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRG 233

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
           FD  V VA SL  MY + G + D   +F+ M+ ++VVSW +++V + + G   +AV+   
Sbjct: 234 FDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFI 293

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M      P+E T A++ S+C SLS      Q+H      G+   LS+ N+++  YS CG
Sbjct: 294 KMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCG 353

Query: 414 SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
            +  A   F  ++  D+++W++IIG Y+  G  +E+ + F  M     +P   A   +LS
Sbjct: 354 KLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLS 413

Query: 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
              +  ++ EG R  + +   + +  +S   + L ++  + G + EA  +        R 
Sbjct: 414 VSGNMAVL-EGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEET---DRD 469

Query: 534 D--TLGAFIGACKVHG 547
           D  +L A I     HG
Sbjct: 470 DIVSLTAMINGYAEHG 485



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 136/268 (50%), Gaps = 2/268 (0%)

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL--EGMKGDYFTFSS 268
           G +  AR+VFD++  RD+V W  ++  Y      D A+ +F+ MR+    +  D    S 
Sbjct: 48  GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSV 107

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           ++ +CG   +   G  +H   +K S    V V +SL+DMY + G I+ +CRVF  M  +N
Sbjct: 108 VLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRN 167

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            V+W  ++ G    G  +E +    +M       D  T A  L +C  L      +Q+H 
Sbjct: 168 AVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHT 227

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           + I  G  A + + N+L   Y++CG +   L  F ++ E D+V+WTS+I AY   G  ++
Sbjct: 228 HVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEK 287

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           ++E F KM +  V P+   F  + SAC+
Sbjct: 288 AVETFIKMRNSQVPPNEQTFATMFSACA 315



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM--LSHAV 461
           +LINA    G++  A Q F  +   D+V+WT+II  Y     S E++ +F  M  +  AV
Sbjct: 43  SLINA----GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAV 98

Query: 462 RPDSIAFLEVLSACSHGGLVS--EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            PD+     VL AC     ++  E L  + +  S   +L      + L D+  RVG + +
Sbjct: 99  SPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTS---LLSSVFVGSSLLDMYKRVGKIEK 155

Query: 520 AYDLLASMP 528
           +  + + MP
Sbjct: 156 SCRVFSEMP 164


>gi|357508205|ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 180/544 (33%), Positives = 301/544 (55%), Gaps = 4/544 (0%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
              Y   L+  A+     +G  +H++ +K  +   L LQN +L++Y+KCK      +LFD
Sbjct: 5   EELYINLLRSYAQDSNFLKGTAIHAYFIKGHIPFTLFLQNHLLNMYIKCKDLTSALQLFD 64

Query: 123 EMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDN-VRLDHITFNSLLRACVQADDIE 179
           EM  RN+V+W+++++G ++ GG  +    F  M  +  V+ +  TF S L+AC  ++++ 
Sbjct: 65  EMPERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSLSENVT 124

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
              +++S +++ G   N F+ +A +    + G + +A ++F+    RD V WN M+  Y 
Sbjct: 125 QAYQIYSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGY- 183

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           L    +     +  M  EG+K D FTF+S +    T+ S K+G Q+H  +++  +  D+ 
Sbjct: 184 LEFSSEQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGMQVHAQLVRSGYGDDIC 243

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V  SLVDMY KN  +++  + FD +  K+V SW  M  G  Q G+ R A+ ++  M +  
Sbjct: 244 VGNSLVDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALAVIAKMKKMG 303

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             P++ TLA+ L++C  L+   E +Q H   IK G    + ++NAL++ Y+KCG +  A 
Sbjct: 304 VKPNKFTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCGCMDSAW 363

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F S     +V+WT++I A A +G   E++++F++M   +V P+ I F+ VL ACS GG
Sbjct: 364 TVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFICVLYACSQGG 423

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            V EG +Y + M  DY I+P  +HY C+  +LGR GL+ EA +L+  MP  P        
Sbjct: 424 FVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRMPFHPGVRVWQTL 483

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC++HG +   K AAE  ++ + + P +Y L+SN+ A    W  V  LR++M      
Sbjct: 484 LSACQIHGDVETGKLAAEHAIKHDKNDPSSYVLLSNMLAETSNWDCVVSLRELMETRNVK 543

Query: 600 KVPG 603
           KVPG
Sbjct: 544 KVPG 547


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 276/476 (57%), Gaps = 1/476 (0%)

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ ++K     + F+   LV +Y K G+ EDA+R+FDE+  RDLV WN ++S  +    
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 244 GDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               +  F  MR E G + +  T  S+V++C  +G+   G+ +HG+V+K        V  
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVN 280

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL++MY K G +D A ++F+ M  +++VSWN+MVV    NG   + + L   M +    P
Sbjct: 281 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 340

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D+ T+ ++L +C    +  +   +HAY  + G  A + I  AL+N Y+K G +  +   F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             +K+ D + WT+++  YA H   +E+I++F+ M+   V  D + F  +LSACSH GLV 
Sbjct: 401 EEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG +YF +M   Y + P  +HY+C+ DLLGR G L +AY+L+ SMP+EP S   GA +GA
Sbjct: 461 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 520

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C+V+G++ L K  AE+LL L+PS   NY ++SN+Y++   W   +++R +M++    + P
Sbjct: 521 CRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNP 580

Query: 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           GCS+IE   +IH FV  D+ HP++  ++  L  +   + E   +     +  ++DE
Sbjct: 581 GCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDE 636



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 234/458 (51%), Gaps = 10/458 (2%)

Query: 6   PAPPIFTVHFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSF 65
           P+   F V    P   + P+ +   T+   ++    R+ ++  L   G +H S+  A S 
Sbjct: 87  PSSLPFDVGLAFPT--IAPSRFGTLTSFPNSSNDSTRTKVAVFL---GKLHNSSLLADSI 141

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
               +   +    +     +H+ ++K    +   + ++++ +Y K    +D ++LFDEM 
Sbjct: 142 VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMP 201

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL-DHITFNSLLRACVQADDIEVGR 182
            R++V+WN+L+SG+   G  G     F RM  ++ R  + +T  S++ AC     ++ G+
Sbjct: 202 NRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGK 261

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            LH  ++K+G      V ++L+++YGK GF++ A ++F+E+  R LV WN MV  +  N 
Sbjct: 262 SLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNG 321

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
             +  + +FNLM+  G+  D  T  +L+ +C   G  +    IH  + +  F+ D+++AT
Sbjct: 322 YAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 381

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+++YAK G ++ +  +F+ +  ++ ++W  M+ G+  +  GREA+KL   M++     
Sbjct: 382 ALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 441

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQC 421
           D VT   +LS+C    +  E ++      +   V+  L   + +++   + G +  A + 
Sbjct: 442 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 501

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             S+  EP    W +++GA   +G  +   EV E++LS
Sbjct: 502 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLS 539


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 312/569 (54%), Gaps = 14/569 (2%)

Query: 82  GKQLHSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           G+Q+H  +++ G L +       ++++Y KC        +F     R++  +N LISG +
Sbjct: 78  GQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFV 136

Query: 141 NCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG--RRLHSFILKVGFGLN 196
             G   +    +R M    +  D  TF SLL+    +D +EV   +++H+   K+GF  +
Sbjct: 137 VNGSPLDAMDMYREMRAKGILPDKYTFPSLLKG---SDAMEVSDVKKVHALAFKLGFVSD 193

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRD-LVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           C+V SALV  Y K   VEDA++VFDE+  RD  VLWN +V+ Y+     + A+ VF+ MR
Sbjct: 194 CYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMR 253

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG+     T +S+++S    G    GR IHGL +K  FD  ++V+ +L+D+Y K+  ++
Sbjct: 254 EEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLE 313

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A  +F+ M  +++ +WN+++      GD    + L   ML     PD VTL ++L +CG
Sbjct: 314 EANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCG 373

Query: 376 SLSISCETRQVHAYAIKNGVQAFLS----IENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            L+   + R++H Y I +G+    S    I N+L++ Y KCG +  A   F S++  D  
Sbjct: 374 RLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSA 433

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W  +I  Y      + ++++F  M    V+PD I F+ +L ACSH G V+EG  +   M
Sbjct: 434 SWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQM 493

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
            + Y+ILP S+HY C+ D+LGR   L EAYDL  SMPI        + + +C++HG+  L
Sbjct: 494 ETLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKDL 553

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
           A  A ++L ELEP     Y L+SNVY   + + +V  +R  M++    K PGCSWI +  
Sbjct: 554 AVVAGKRLYELEPEHCGVYVLMSNVYVEAKKYEEVLDVRDTMKEQNVKKTPGCSWIGLQN 613

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
            +HTF + D++HP+   ++  L  +   M
Sbjct: 614 GVHTFFTGDQTHPEFESIHGWLSLLISHM 642



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 180/367 (49%), Gaps = 7/367 (1%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           L+ C Q  D   G+++H F+++ GF   +    ++LV++Y KCG +  A  VF     RD
Sbjct: 66  LQRCAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFGGSE-RD 124

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           +  +N ++S + +N     A+ ++  MR +G+  D +TF SL+     +  S + +++H 
Sbjct: 125 VFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKGSDAMEVSDV-KKVHA 183

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGR 346
           L  K  F  D  V ++LV  Y+K  +++DA +VFD +  + + V WN +V G+       
Sbjct: 184 LAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFE 243

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406
           +A+ +   M +        T+ S+LSS          R +H  A+K G  + + + NALI
Sbjct: 244 DALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALI 303

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           + Y K   +  A   F ++ E DL TW S++  + + G    ++ +FE ML   +RPD +
Sbjct: 304 DLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIV 363

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH---YTCLTDLLGRVGLLVEAYDL 523
               VL  C     + +G      MI+   +   S +   +  L D+  + G L +A  +
Sbjct: 364 TLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMV 423

Query: 524 LASMPIE 530
             SM ++
Sbjct: 424 FDSMRVK 430



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 21/308 (6%)

Query: 41  DRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL 100
           D  ++ S++R  G +  S H+  S  S +  VS   G L  G+ +H   +K+G  + + +
Sbjct: 244 DALIVFSKMREEG-VAMSRHTITSVLS-SFTVS---GDLDNGRSIHGLAVKMGFDSGIVV 298

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNV 158
            N ++ +Y K K  ++   +F+ M  R++ TWN+++     CG +      F  ML   +
Sbjct: 299 SNALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGI 358

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF----GLNCFVSSALVDLYGKCGFVE 214
           R D +T  ++L  C +   ++ GR +H +++  G       N F+ ++L+D+Y KCG + 
Sbjct: 359 RPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLR 418

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           DAR VFD +  +D   WN+M++ Y +   G+ A+ +F+ M   G+K D  TF  L+ +C 
Sbjct: 419 DARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACS 478

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATS-----LVDMYAKNGNIDDACRVFDGMT-AKN 328
             G    GR      + Q   L  ++ TS     ++DM  +   +++A  +   M    N
Sbjct: 479 HSGFVNEGRNF----LAQMETLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPICDN 534

Query: 329 VVSWNTMV 336
            V W +++
Sbjct: 535 PVVWRSIL 542


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 304/561 (54%), Gaps = 8/561 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMK-LGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L VS +   L  G+  H+ I+K L       L N ++++Y K    +  + + +    R+
Sbjct: 15  LAVSVRSSLL--GRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRS 72

Query: 129 IVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +VTW  LI+G +  G  V+   +F  ML D VR +  TF  +L+A         G++LH+
Sbjct: 73  VVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHA 132

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG-D 245
             +K G   + FV  ++ D+Y K GF+ DA +VFDE+  R+L  WN  +S   L+    D
Sbjct: 133 LAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPED 192

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             IA   L+R+ G K D  TF   +N+C        G Q+HG +I+  +  +V V+  L+
Sbjct: 193 SVIAFIELLRVGG-KPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLI 251

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           D Y K G ++ +  VFD M  +N VSW++++  + QN +  +A  L     +    P + 
Sbjct: 252 DFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDF 311

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
            ++S+L +C  LS     R V A A+K  V+  + + +AL++ Y KCGSI  A Q F ++
Sbjct: 312 MVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAM 371

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEG 484
            E +LV+W +++G YA  G + +++ + E+M S A + P  ++ +  LSACS  G +  G
Sbjct: 372 PERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTG 431

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           ++ F  M   Y + P  EHY CL DLLGR G++  AYD +  MP  P     GA +GAC+
Sbjct: 432 MKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACR 491

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           +HG   L K AAEKL EL+P    N+ ++SN++A+   W +V  +R  M++    K  G 
Sbjct: 492 MHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGF 551

Query: 605 SWIEIAGEIHTFVSSDRSHPQ 625
           SWI +   IH F + D+SH +
Sbjct: 552 SWITVDSRIHMFQAKDKSHEK 572



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 4/152 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A    ++ G+ + +  +K  +   + + + ++ +Y KC + D+ E+ F+ M  
Sbjct: 314 SSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPE 373

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRR 183
           RN+V+WN L+ G  + G           M     +   +++    L AC +A D++ G +
Sbjct: 374 RNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMK 433

Query: 184 L-HSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           +  S   + G        + LVDL G+ G VE
Sbjct: 434 IFESMKERYGVEPGPEHYACLVDLLGRAGMVE 465


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 180/552 (32%), Positives = 293/552 (53%), Gaps = 9/552 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +  A K  A     + G+ +H   +  G      +QN ++ +Y+ C      E +F 
Sbjct: 108 HLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFG 167

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            MR R +V+WN +I+G +  G        F  M  D V +D  T  S+L AC QA D+  
Sbjct: 168 AMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNT 227

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSC 237
           GR +H  +   G G    V +AL+D+YGKC  +EDARRVFD   C+   D+V W  M+  
Sbjct: 228 GRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDH--CKHDKDVVSWTAMIGA 285

Query: 238 YALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
           Y LN     AI++   M + G    +  T   L+++C ++ S K  +  H L I+     
Sbjct: 286 YVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKS 345

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D+ V T+L+D YA+ G +    R+     +    +WN  + G+  +G  ++A++L + M+
Sbjct: 346 DIAVETALIDAYARCGKMK-LMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRMI 404

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
             S  PD  T+ASIL +    +   E + +H + +  G      I   LI+ YSK G + 
Sbjct: 405 AESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A   F  + E D+V WT+II  Y  HG ++ +I ++++M+    +P+++    +L ACS
Sbjct: 465 AAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACS 524

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H G++ EG++ F  M + + ++P+ EHY+CL D+LGR G + EA+ L+  MP EP +   
Sbjct: 525 HAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVW 584

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
           GA +GAC +H ++   + AA++L +L+P    +Y L+ N+YA+   W DV  +R+MM + 
Sbjct: 585 GALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVER 644

Query: 597 CDHKVPGCSWIE 608
              K PG S +E
Sbjct: 645 GLLKEPGSSLVE 656



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 35/294 (11%)

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+AV++ MR      D+ TF     +C  L   + GR +H   +   F  D  V  +L+ 
Sbjct: 96  ALAVYSAMR----AFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALIS 151

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MY   G++  A  VF  M  + VVSWN ++ G  +NG    A+++  +M       D  T
Sbjct: 152 MYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRAT 211

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           + S+L +C         R VH      G+  +++++NALI+ Y KC S+  A + F   K
Sbjct: 212 VVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCK 271

Query: 427 -EPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVSEG 484
            + D+V+WT++IGAY  +  + E+I +  +ML S A  P+ +  + +LSAC+        
Sbjct: 272 HDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACAS------- 324

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGL---------LVEAYDLLASMPI 529
                        +P  +H  C   L  R+GL         L++AY     M +
Sbjct: 325 -------------MPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKL 365



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           I ES     +  +  L   A+   L++GK +H  ++ LG      +   ++ VY K    
Sbjct: 404 IAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDL 463

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRAC 172
           D    LF  +  +++V W T+I+G    G   T    + RM+    + + +T  +LL AC
Sbjct: 464 DAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYAC 523

Query: 173 VQADDIEVGRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
             A  I+ G ++   +  V G   N    S LVD+ G+ G +E+A R+  ++
Sbjct: 524 SHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDM 575


>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 564

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 315/560 (56%), Gaps = 7/560 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           + ES   +H  Y +ALK+ +     +Q   +H + +  G  + L L + ++ +Y+K    
Sbjct: 4   VSESYLLSHPLYLKALKLCSYQNVKKQLLLIHGNSVTNGFGSNLQLNDMLIDLYLKQGDV 63

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
               KLFD +  R++V+W  +IS    CG   +    F++M   +VR +  T+ S+L++C
Sbjct: 64  KHARKLFDRIPKRDVVSWTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSC 123

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
                ++ G ++   + K     N  V SAL+ LY +CG +EDAR  FD +  RDLV WN
Sbjct: 124 KDLGCLKEGMQIQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWN 183

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M+  Y  N   D + ++F LM  EG K D FTF SL+ +   +   +   Q+HGL IK 
Sbjct: 184 SMIDGYTTNACVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAIKL 243

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ-NGDGREAVKL 351
            F     +  SLVD Y K G+I +A ++ +  T ++++S   ++ GF Q N    +A  +
Sbjct: 244 GFGRSSALIRSLVDAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSDAFDI 303

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF-LSIENALINAYS 410
             +M+      DEV ++S+L  C +++     RQ+H +A+K+    F +++ N+LI+ Y+
Sbjct: 304 FNEMILMKTKMDEVVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYA 363

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G I  A+  F  +KE D+ +WTS+I  Y  HG  +++I+++ +M    ++P+ + FL 
Sbjct: 364 KSGDIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDVTFLS 423

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-- 528
           +LSACSH G    G + FN MI+ + I    EH++C+ D+L R G L EAY+L+ S    
Sbjct: 424 LLSACSHTGQTELGWKIFNKMINKHGIKAREEHFSCIIDMLARSGYLEEAYELIRSKDGI 483

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           I   S T GAF+ AC+ HG++ L+K AA +LL +EP KPVNY  +++V+A+   W    +
Sbjct: 484 ISLSSSTWGAFLDACRRHGNVQLSKVAASQLLSVEPKKPVNYINLASVHAANGAWDSALK 543

Query: 589 LRKMMRDNCD-HKVPGCSWI 607
            R++M+++   +K PG S +
Sbjct: 544 TRQLMKESGSCNKTPGYSLV 563


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 297/555 (53%), Gaps = 7/555 (1%)

Query: 84  QLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           Q+H+ I+  GL    S     V+  Y +         LFD++  R +  WN +I      
Sbjct: 25  QIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRR 84

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                V   + +M+ +  + D  TF   ++A     D+E G R+    +  G+G + FV 
Sbjct: 85  YHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVG 144

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           S++++LY KCG +++A+ VFD+++ RD+V W  M++    N     A+ +F  MR EG++
Sbjct: 145 SSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIE 204

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD-VLVATSLVDMYAKNGNIDDACR 319
           GD      LV +C  LG  KLG  +HG  +++   +D V++ TSLVDMYAK G+++ A R
Sbjct: 205 GDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASR 264

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ M  KN VSW  ++ GF QNG    A+ LL +M    F PD   L S L +C  +  
Sbjct: 265 VFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGH 324

Query: 380 SCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
               + +H Y ++  G +  L +  ALI+ Y+KCGS++ A   F  V   D++ W ++I 
Sbjct: 325 LKLGKSIHGYIVRRLGFE--LVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIA 382

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
           +Y  HG  KE + +F KM    + PD   F  +LSA SH G V  G  +FN M+++  I 
Sbjct: 383 SYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIP 442

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           P  +HY C+ DL  R G + EAY L+ SM  EP      A +  C  + ++   + AA+K
Sbjct: 443 PSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKK 502

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
           +L+L P     YALVSN ++  R W  V+ LRK+M++    KVPG S +E+ G+   F+ 
Sbjct: 503 ILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLV 562

Query: 619 SDRSHPQAVHMYAML 633
            D++H Q   +  ML
Sbjct: 563 EDKNHHQYEEILQML 577



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 212/389 (54%), Gaps = 8/389 (2%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           ++E      S ++ A+K S+    L+ G+++    +  G    + + + VL++YVKC   
Sbjct: 98  VNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKI 157

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           D+ + +FD+M  R++V W T+I+G++  G        FRRM  + +  D +    L++AC
Sbjct: 158 DEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQAC 217

Query: 173 VQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
               ++++G  +H   ++    + +  + ++LVD+Y K G +E A RVF+++  ++ V W
Sbjct: 218 ANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSW 277

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
             ++S +A N   + A+ +   M+    K D     S + +C  +G  KLG+ IHG +++
Sbjct: 278 GALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVR 337

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
           +    ++++ T+L+DMYAK G++  A  +FD + +++V+ WNTM+  +G +GDG+E + L
Sbjct: 338 R-LGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSL 396

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAY 409
              M + +  PD  T AS+LS+  S S   +  Q    A+ N  +   S ++   +++ +
Sbjct: 397 FLKMKEANISPDHATFASLLSAL-SHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLF 455

Query: 410 SKCGSIAGALQCFGSVK-EPDLVTWTSII 437
           S+ G +  A Q   S+  EP L  W +++
Sbjct: 456 SRAGRVEEAYQLIESMNTEPGLAIWVALL 484


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 299/540 (55%), Gaps = 14/540 (2%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH   +K GL   + + N +L  Y K        ++F EM  ++ VT+N ++ G    G 
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG- 429

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
                   +    ++L    F ++ RA      + + +  HS        LN FV+++L+
Sbjct: 430 --------LHTQALQL----FAAMRRAGYSRHPLHLLQYSHSRSRSTSV-LNVFVNNSLL 476

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           D Y KC  ++D RR+FDE+  RD V +NV+++ YA N      + +F  M+  G      
Sbjct: 477 DFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVL 536

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
            ++++++  G+L    +G+QIH  ++      + L+  +L+DMY+K G +D A   F   
Sbjct: 537 PYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNR 596

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
           + K+ +SW  ++ G+ QNG   EA++L  DM +    PD  T +SI+ +  SL++    R
Sbjct: 597 SEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGR 656

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           Q+H+Y I++G ++ +   + L++ Y+KCG +  AL+ F  + E + ++W ++I AYA +G
Sbjct: 657 QLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYG 716

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
            +K +I++FE ML     PDS+ FL VL+ACSH GL  E ++YF+LM   Y I P  EHY
Sbjct: 717 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHY 776

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
            C+ D LGRVG   +   +L  MP +       + + +C++HG+  LA+ AA+KL  +EP
Sbjct: 777 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEP 836

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           +    Y ++SN+YA    W D A ++K+MRD    K  G SW+EI  +I++F S+D + P
Sbjct: 837 TDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSP 896



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 199/406 (49%), Gaps = 34/406 (8%)

Query: 61  SAHSFYSQALKVSA---KFGFLQQGKQL----HSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           S    ++QAL++ A   + G+ +    L    HS      + N + + N +L  Y KC  
Sbjct: 426 SKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLN-VFVNNSLLDFYSKCDC 484

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
            DDM +LFDEM  R+ V++N +I+      C   V   FR M         + + ++L  
Sbjct: 485 LDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 544

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
                D+ +G+++H+ ++ +G      + +AL+D+Y KCG ++ A+  F     +  + W
Sbjct: 545 AGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISW 604

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
             +++ Y  N   + A+ +F+ MR  G++ D  TFSS++ +  +L    LGRQ+H  +I+
Sbjct: 605 TALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIR 664

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
             +   V   + LVDMYAK G +D+A R FD M  +N +SWN ++  +   G+ + A+K+
Sbjct: 665 SGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKM 724

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV-----HAYAIKNGVQAFLSIENALI 406
              ML   F PD VT  S+L++C    ++ E  +      H Y+I    + +  + + L 
Sbjct: 725 FEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL- 783

Query: 407 NAYSKCGSIAGALQCFGSVK--------EPDLVTWTSIIGAYAFHG 444
                     G + CF  V+        + D + WTSI+ +   HG
Sbjct: 784 ----------GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG 819



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 199/451 (44%), Gaps = 31/451 (6%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  Y         + LF     RN  TW  ++      G   +    FR ML + V 
Sbjct: 292 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 351

Query: 160 LDHITFNSLLR--ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
            D +T  ++L    C           LH F +K G   + FV + L+D Y K G +  AR
Sbjct: 352 PDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAAR 404

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           RVF E+  +D V +N M+   +   L   A+ +F  MR  G            +S     
Sbjct: 405 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRS--- 461

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
                        + +  L+V V  SL+D Y+K   +DD  R+FD M  ++ VS+N ++ 
Sbjct: 462 -------------RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 508

Query: 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            +  N      ++L R+M +  F    +  A++LS  GSL      +Q+HA  +  G+ +
Sbjct: 509 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 568

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
              + NALI+ YSKCG +  A   F +  E   ++WT++I  Y  +G  +E++++F  M 
Sbjct: 569 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 628

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI-SDYHILPDSEHYTCLTDLLGRVGL 516
              +RPD   F  ++ A S   ++  G +  + +I S Y     S   + L D+  + G 
Sbjct: 629 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG--SVLVDMYAKCGC 686

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           L EA      MP E  S +  A I A   +G
Sbjct: 687 LDEALRTFDEMP-ERNSISWNAVISAYAHYG 716



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 57/309 (18%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIM 90
           T  + N Q  +   L S +R +G   +      + +S  +K S+    +  G+QLHS+++
Sbjct: 609 TGYVQNGQHEEALQLFSDMRRAGLRPD-----RATFSSIIKASSSLAMIGLGRQLHSYLI 663

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           + G  + +   + ++ +Y KC   D+  + FDEM  RN ++WN +IS   + G   N   
Sbjct: 664 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 723

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQ---ADDIEVGRRLHSFILKVGFGLNCFVS--SAL 203
            F  ML      D +TF S+L AC     AD  E  +  H  ++K  + ++ +    + +
Sbjct: 724 MFEGMLHCGFNPDSVTFLSVLAACSHNGLAD--ECMKYFH--LMKHQYSISPWKEHYACV 779

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +D  G+ G     +++  E+                                    K D 
Sbjct: 780 IDTLGRVGCFSQVQKMLVEM----------------------------------PFKADP 805

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV---DMYAKNGNIDDACRV 320
             ++S+++SC   G+ +L R    +   + F ++   AT  V   ++YA+ G  +DA  V
Sbjct: 806 IIWTSILHSCRIHGNQELAR----VAADKLFGMEPTDATPYVILSNIYARAGQWEDAACV 861

Query: 321 FDGMTAKNV 329
              M  + V
Sbjct: 862 KKIMRDRGV 870


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 164/501 (32%), Positives = 284/501 (56%), Gaps = 6/501 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           TF  L+ +C Q + +  G  +H  ++  GF  + F+++ L+++Y + G ++ A +VFDE 
Sbjct: 80  TFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDET 139

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS---- 279
             R + +WN +    A+   G   + ++  M   G   D FT++ ++ +C     S    
Sbjct: 140 RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPL 199

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           + G++IH  +++  ++ ++ V T+L+D+YAK G++  A  VF  M  KN VSW+ M+  F
Sbjct: 200 RKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACF 259

Query: 340 GQNGDGREAVKLLRDML--QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397
            +N    +A++L + M+    +  P+ VT+ ++L +C  L+   + + +H Y ++  + +
Sbjct: 260 AKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDS 319

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML 457
            L + NALI  Y +CG +    + F ++K+ D+V+W S+I  Y  HG  K++I++FE M+
Sbjct: 320 ILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMI 379

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              V P  I+F+ VL ACSH GLV EG   F  M+S Y I P  EHY C+ DLLGR   L
Sbjct: 380 HQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRL 439

Query: 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577
            EA  L+  M  EP     G+ +G+C++H ++ LA+ A+  L ELEP    NY L++++Y
Sbjct: 440 GEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIY 499

Query: 578 ASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           A  + W +   + K++      K+PGCSWIE+  ++++FVS D  +PQ   ++A+L  + 
Sbjct: 500 AEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLS 559

Query: 638 GLMEENNVSGHCNVLDKEMDE 658
             M+        NV+  ++DE
Sbjct: 560 NEMKAQGYVPQTNVVLYDLDE 580



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 193/395 (48%), Gaps = 23/395 (5%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  YS A K S  +G       +H  ++  G      L  +++++Y +  + D   K+FD
Sbjct: 83  HLIYSCAQKNSLSYGL-----DVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFD 137

Query: 123 EMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD---- 176
           E R R I  WN L   +  +  G  +   + +M       D  T+  +L+ACV ++    
Sbjct: 138 ETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVC 197

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
            +  G+ +H+ IL+ G+  N  V + L+D+Y K G V  A  VF  +  ++ V W+ M++
Sbjct: 198 PLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIA 257

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKG--DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           C+A N +   A+ +F LM  E      +  T  +++ +C  L + + G+ IHG ++++  
Sbjct: 258 CFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQL 317

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D  + V  +L+ MY + G +    RVFD M  ++VVSWN+++  +G +G G++A+++  +
Sbjct: 318 DSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFEN 377

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETR-----QVHAYAIKNGVQAFLSIENALINAY 409
           M+     P  ++  ++L +C    +  E +      +  Y I  G++ +      +++  
Sbjct: 378 MIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHY----ACMVDLL 433

Query: 410 SKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
            +   +  A++    +  EP    W S++G+   H
Sbjct: 434 GRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIH 468



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFC----PDEVTLASILSSCGSLSISCETRQVHA 388
           N ++    + G+ ++A+ LL        C    P + T   ++ SC   +       VH 
Sbjct: 51  NQLIQSLCKGGNLKQALHLL--------CCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHR 102

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
             + +G      +   LIN Y + GSI  AL+ F   +E  +  W ++  A A  G  KE
Sbjct: 103 CLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKE 162

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            ++++ +M       D   +  VL AC
Sbjct: 163 LLDLYIQMNWIGTPSDRFTYTYVLKAC 189


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 297/531 (55%), Gaps = 7/531 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV--R 127
           L + ++   L   +Q+H+ ++  G  +++ L + + + Y++    D     F+ +    R
Sbjct: 11  LTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKR 70

Query: 128 NIVTWNTLISGIIN----CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           N  +WNT++SG       C  +V   + RM      +D       ++ACV    +E G  
Sbjct: 71  NRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H   +K G   + +V+ +LV++Y + G +E A++VFDE+  R+ VLW V++  Y     
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSK 190

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVAT 302
                 +F LMR  G+  D  T   LV +CG + + K+G+ +HG+ I++SF D    +  
Sbjct: 191 DPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQA 250

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           S++DMY K   +D+A ++F+    +NVV W T++ GF +     EA  L R ML+ S  P
Sbjct: 251 SIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILP 310

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           ++ TLA+IL SC SL      + VH Y I+NG++       + I+ Y++CG+I  A   F
Sbjct: 311 NQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVF 370

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + E ++++W+S+I A+  +GL +E+++ F KM S  V P+S+ F+ +LSACSH G V 
Sbjct: 371 DMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 430

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           EG + F  M  DY ++P+ EHY C+ DLLGR G + EA   + +MP++P +   GA + A
Sbjct: 431 EGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSA 490

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
           C++H  + LA   AEKLL +EP K   Y L+SN+YA    W  V  +R+ M
Sbjct: 491 CRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKM 541



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 205/417 (49%), Gaps = 27/417 (6%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           A+K     G L+ G  +H   MK GL     +   ++ +Y +    +  +K+FDE+ VRN
Sbjct: 115 AIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRN 174

Query: 129 IVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            V W  L+ G +    +  V   F  M    + LD +T   L++AC      +VG+ +H 
Sbjct: 175 SVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHG 234

Query: 187 FILKVGF-GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
             ++  F   + ++ ++++D+Y KC  +++AR++F+  + R++V+W  ++S +A      
Sbjct: 235 VSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAV 294

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A  +F  M  E +  +  T ++++ SC +LGS + G+ +HG +I+   ++D +  TS +
Sbjct: 295 EAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFI 354

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMYA+ GNI  A  VFD M  +NV+SW++M+  FG NG   EA+     M   +  P+ V
Sbjct: 355 DMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSV 414

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN------------ALINAYSKCG 413
           T  S+LS+C            H+  +K G + F S+               +++   + G
Sbjct: 415 TFVSLLSACS-----------HSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAG 463

Query: 414 SIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
            I  A     ++  +P    W +++ A   H     + E+ EK+LS      S+  L
Sbjct: 464 EIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVL 520


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 192/579 (33%), Positives = 316/579 (54%), Gaps = 19/579 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-RVRNIVTWNTLIS 137
           L+ G ++H  ++   L     + N +L++Y KC +    +++F +M R RN+++W ++++
Sbjct: 161 LRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW-SIMA 219

Query: 138 GIINCGGNV---TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G     GNV     +FR MLL  ++       ++L AC     ++ GR +HS I   GF 
Sbjct: 220 GAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFE 279

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
               V++A++ +YG+CG VE+AR+VFD +    RD+V WN+M+S Y  N  G  AI ++ 
Sbjct: 280 SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQ 339

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M+L   + D  T+ SL+++C +     LGR +H  ++    + +V+V  +LV MYAK G
Sbjct: 340 RMQL---RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCG 396

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ----GS---FCPDEV 365
           +  +A  VFD M  ++++SW T++  + +     EA  L + ML+    GS     PD +
Sbjct: 397 SHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDAL 456

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF-GS 424
              +IL++C  +S   + + V   A   G+ +  ++  A++N Y KCG I    + F G 
Sbjct: 457 AFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGV 516

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
              PD+  W ++I  YA  G S E++++F +M    VRPDS +F+ +L ACSH GL  +G
Sbjct: 517 CSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQG 576

Query: 485 LRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
             YF  M ++Y  +  + +H+ C+ DLLGR G L EA + L  +P++P +    + + AC
Sbjct: 577 KSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAAC 636

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           + H  +  AK  A KLL LEP     Y  +SN+YA  + W  VA++RK M +    K  G
Sbjct: 637 RNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERG 696

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
            S IEI   +H F + D +HP+   +   L  +   M+E
Sbjct: 697 VSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKE 735



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/537 (27%), Positives = 278/537 (51%), Gaps = 22/537 (4%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLC-NKLSLQNQVLHVYVKCKAFD 115
           ++  + ++ Y++ L+  A+   L +G+++HS  +K  L    L L N ++ +Y  C +  
Sbjct: 37  QAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPG 96

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACV 173
           D +  FD +  RN+ +W  L++     G +        RM  D VR D +TF + L +C 
Sbjct: 97  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 156

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWN 232
             + +  G R+H  ++     ++  VS+AL+++Y KCG +  A+RVF ++   R+++ W+
Sbjct: 157 DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 216

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +M   +AL+     A+  F  M L G+K       +++++C +    + GR IH  +   
Sbjct: 217 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALS 276

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVK 350
            F+ ++LVA +++ MY + G +++A +VFD M    ++VVSWN M+  +  N  G++A++
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQ 336

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L + M       D+VT  S+LS+C S       R +H   + + ++  + + NAL++ Y+
Sbjct: 337 LYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYA 393

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-------SHAVRP 463
           KCGS   A   F  +++  +++WT+II AY    L  E+  +F++ML       S  V+P
Sbjct: 394 KCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKP 453

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           D++AF+ +L+AC+    + +G +  +   +   +  D    T + +L G+ G + E   +
Sbjct: 454 DALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRI 512

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL--LELEPSKPVNYALVSNVYA 578
              +   P      A I    V+   G +  A +    +E+E  +P +++ VS + A
Sbjct: 513 FDGVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLA 566



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 4/338 (1%)

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATS 303
           D A AV +L + + ++ +  T++ L+  C    +   GR+IH L +K +    ++++   
Sbjct: 26  DIASAVLDLEK-QAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNH 84

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           +V MYA   +  DA   FD +  +N+ SW  +V  F  +G  +E ++ L  M Q    PD
Sbjct: 85  IVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPD 144

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            VT  + L SCG      +  ++H   + + ++    + NAL+N Y KCGS++ A + F 
Sbjct: 145 AVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFA 204

Query: 424 SVKEP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            ++   ++++W+ + GA+A HG   E++  F  ML   ++    A + +LSACS   LV 
Sbjct: 205 KMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQ 264

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
           +G R  +  I+      +      +  + GR G + EA  +  +M    R       + +
Sbjct: 265 DG-RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLS 323

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
             VH   G       + ++L   K    +L+S   ++E
Sbjct: 324 AYVHNDRGKDAIQLYQRMQLRADKVTYVSLLSACSSAE 361


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 299/541 (55%), Gaps = 13/541 (2%)

Query: 104 VLHVYVKCKAFDDMEKLF-DEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL 160
           ++++Y +C   ++   +F D    RN+  +N +I+G +  G   +   +++RM    V  
Sbjct: 16  LINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMP 75

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  TF  ++RAC +  ++   R++H  + K+G  LN FV SALV+ Y K    EDA +VF
Sbjct: 76  DKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVF 132

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           +E+  RD+VLWN M++ Y      + A+ VF  M  EG+    FT +S+++   ++G   
Sbjct: 133 EELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDIN 192

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR IHG+V K  +   V V+ +L+DMY K  + +DA  +F+ +  K++ SWN+++    
Sbjct: 193 NGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHE 252

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF-- 398
           Q  D    ++L   ML     PD +T+ ++L +C  L+     R++H Y I NG+     
Sbjct: 253 QCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNEN 312

Query: 399 ---LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              + + NA+++ Y+KCG +  A   F  ++  D+ +W  +I  YA HG   E++++F +
Sbjct: 313 GDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHR 372

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M    ++PD + F+ VLSACSH G V +G  +   M  ++ ++P  EHYTC+ D+LGR G
Sbjct: 373 MCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAG 432

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK--PVNYALV 573
            L EAYDL   +P+E       A +GAC++HG+  L     EK+ +LEP      +Y L+
Sbjct: 433 HLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILM 492

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           S++Y     + +   +R+ M++    K PGCSWIE+   ++ F   DR+H +   +   L
Sbjct: 493 SSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELKDGLYVFSMGDRTHHELNALINCL 552

Query: 634 C 634
           C
Sbjct: 553 C 553



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 197/383 (51%), Gaps = 9/383 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +++H  + K+GL   + + + +++ Y+K    +D EK+F+E+  R++V WN +I+G    
Sbjct: 94  RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKI 153

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G        F+RM  + + L   T  S+L       DI  GR +H  + K+G+     VS
Sbjct: 154 GHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVS 213

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+D+YGKC   EDA  +F+ +  +DL  WN ++S +      DG + +F  M    + 
Sbjct: 214 NALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVL 273

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVI-----KQSFDLDVLVATSLVDMYAKNGNID 315
            D  T ++++ +C  L +   GR+IHG +I     K     DVL+  +++DMYAK G + 
Sbjct: 274 PDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMK 333

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           +A  +FD M  K+V SWN M++G+  +G G EA+ +   M +    PD VT   +LS+C 
Sbjct: 334 NADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACS 393

Query: 376 SLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTW 433
                 + R  +    ++ GV   +     +I+   + G +  A      +  E +L+ W
Sbjct: 394 HAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILW 453

Query: 434 TSIIGAYAFHGLSKESIEVFEKM 456
            +++GA   HG ++    V EK+
Sbjct: 454 MALLGACRLHGNAELGNVVGEKI 476



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 201 SALVDLYGKCGFVEDARRVF-DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           ++L+++Y +C  +E+A  VF D    R++  +N +++ +  N L       +  MR  G+
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D FTF  +V +C         R+IHG + K   +L+V V ++LV+ Y K    +DA +
Sbjct: 74  MPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF+ +  ++VV WN M+ G+ + G   +AV + + M +        T  SILS   S+  
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGD 190

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               R +H    K G  + +++ NALI+ Y KC     AL  F  + E DL +W SII A
Sbjct: 191 INNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISA 250

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           +        ++ +F KML   V PD I    VL ACSH   +  G      MI
Sbjct: 251 HEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMI 303



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 135/262 (51%), Gaps = 14/262 (5%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L +    G +  G+ +H  + K+G  + +++ N ++ +Y KCK  +D   +F+ +  
Sbjct: 179 TSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINE 238

Query: 127 RNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           +++ +WN++IS    C  +      F +ML   V  D IT  ++L AC     +  GR +
Sbjct: 239 KDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREI 298

Query: 185 HSFILKVGFGLN-----CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
           H +++  G G N       +++A++D+Y KCG +++A  +FD +  +D+  WN+M+  YA
Sbjct: 299 HGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYA 358

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           ++  G  A+ +F+ M    +K D  TF  ++++C   G    GR     + +   +  V+
Sbjct: 359 MHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRS---FLTRMELEFGVI 415

Query: 300 VA----TSLVDMYAKNGNIDDA 317
                 T ++DM  + G++ +A
Sbjct: 416 PTIEHYTCIIDMLGRAGHLGEA 437


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 301/556 (54%), Gaps = 10/556 (1%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           FL  G+ +H+ I    L +   L N ++++Y +CK      K F+++  +N+V+WN +I 
Sbjct: 144 FLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIG 203

Query: 138 GIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                G  G+    F+RM  + V  D +TF  +L AC   +     RR+H  +   G   
Sbjct: 204 AYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKLELSGLEW 263

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + FV+S+LV+ YGKCG + +A+RVFD +  ++ V    M++ YA + LG+ A+ ++  M 
Sbjct: 264 DVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTSMLAAYAQHGLGEEALEIYREME 323

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF--DLDVLVATSLVDMYAKNGN 313
            +G K D  TF S +++C ++G+   GR IH  ++        DV++ T+L++MY + G 
Sbjct: 324 SQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGV 383

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +D A  +FDGM  KN ++WN ++  + Q G G+EA+ L   M      P+ +T  ++L++
Sbjct: 384 LDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSM---DAQPNSLTFLAMLTA 440

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C ++    + R  HA     G +  + +  AL+N Y KCGS+  AL  F  ++   +VTW
Sbjct: 441 CSTVGALLQGRAAHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTW 500

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T  + A A HG  +E++ +F +M    V PDS+A L  L ACSH G + EG  YF  MI 
Sbjct: 501 TVAMLALAHHGEFRETLRLFTEMELDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQ 560

Query: 494 DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI-GLA 552
           DY + P   HY C+ DLL R GLL  A +L+ SMP EP + T    + AC+ H ++   A
Sbjct: 561 DYGVSPTLAHYDCVVDLLCRTGLLGRAEELIDSMPFEPSAVTWTTLLAACRTHSTLYDKA 620

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGE 612
           K AA+K LE EP     Y  +S +Y+  R  +   RL    + N   +  G  +IE   +
Sbjct: 621 KVAADKALETEPHNAGIYFALSYMYSGVRT-YRQERLNVSDKLNSIQRQVGRCFIETRNQ 679

Query: 613 IHTFVSSDR-SHPQAV 627
           IH  V+ +  +HP A 
Sbjct: 680 IHEIVAGETAAHPYAA 695



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 248/481 (51%), Gaps = 26/481 (5%)

Query: 69  ALKVSAKFG--FLQQGKQLHSHI---MKLGLCNKLSLQ----------NQVLHVYVKCKA 113
           ++   A+ G  FL QG++LH       + G   ++++             ++ +Y KC +
Sbjct: 16  SISACARLGSAFLSQGRELHERYCQWWRRGGGGEVAVAVAGEEDDLVATALVDMYSKCGS 75

Query: 114 FDDMEKLFDEMRV--RNIVTWNTLISGIINCGGN---VTPYFRRMLLDNVRLDHITFNSL 168
            DD  ++FD+  V  + +  W  ++SG    G +   +  Y R + + +   D +   S 
Sbjct: 76  LDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFLSVSSEPPDTVMLLSA 135

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           + AC  A+ ++ GR +H+ I       +  + + LV++YG+C  +  AR+ F+++  ++L
Sbjct: 136 ITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAKNL 195

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WNV++  YA       A+ +F  M  EG+  D  TF  ++++CG + ++   R+IH  
Sbjct: 196 VSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKK 255

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           +     + DV VA+SLV+ Y K G + +A RVFD M  KN V+  +M+  + Q+G G EA
Sbjct: 256 LELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTSMLAAYAQHGLGEEA 315

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV--QAFLSIENALI 406
           +++ R+M       D VT  S L +C S+    + R +H+  + +G+  Q  + +  AL+
Sbjct: 316 LEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALL 375

Query: 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466
           N Y +CG +  A   F  + + + +TW +++G+YA  G  KE++ ++  M     +P+S+
Sbjct: 376 NMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSM---DAQPNSL 432

Query: 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526
            FL +L+ACS  G + +G R  +  ++      + E    L ++ G+ G L +A    A 
Sbjct: 433 TFLAMLTACSTVGALLQG-RAAHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAK 491

Query: 527 M 527
           +
Sbjct: 492 L 492



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 25/329 (7%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQIH-------------GLVIKQSFDLDV 298
           M LEG+        S +++C  LGS+ L  GR++H              + +  + + D 
Sbjct: 1   MDLEGVPRSASNLVSSISACARLGSAFLSQGRELHERYCQWWRRGGGGEVAVAVAGEEDD 60

Query: 299 LVATSLVDMYAKNGNIDDACRVFD--GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           LVAT+LVDMY+K G++DDA RVFD   + +K +  W  MV G+  +G  R+A++L +  L
Sbjct: 61  LVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFL 120

Query: 357 Q-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415
              S  PD V L S +++C S     + R +HA      +     + N L+N Y +C  +
Sbjct: 121 SVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKEL 180

Query: 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
             A + F  +   +LV+W  IIGAYA  G    ++E+F++M    V  D++ FL VL AC
Sbjct: 181 HRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDAC 240

Query: 476 SHGGLVSEG-LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
             GG+ + G +R  +  +    +  D    + L +  G+ G L EA  +  +MP++  + 
Sbjct: 241 --GGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLK-NTV 297

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELE 563
           T+ + + A   H   GL + A E   E+E
Sbjct: 298 TMTSMLAAYAQH---GLGEEALEIYREME 323



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNK--LSLQNQVLHVYVKCKAFDDMEKLFDE 123
           +  AL   +  G L QG+ +HS ++  G+  +  + L   +L++Y +C   D  + LFD 
Sbjct: 334 FISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDG 393

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           M  +N +TWN L+      G           +D  + + +TF ++L AC     +  GR 
Sbjct: 394 MADKNTITWNALMGSYAQWGYGKEALNLYHSMD-AQPNSLTFLAMLTACSTVGALLQGRA 452

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
            H+ +   GF     V  ALV++YGKCG +EDA   F ++  + +V W V +   A +  
Sbjct: 453 AHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVAMLALAHHGE 512

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA-- 301
               + +F  M L+G+  D     + + +C   G  K GR     +I Q + +   +A  
Sbjct: 513 FRETLRLFTEMELDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMI-QDYGVSPTLAHY 571

Query: 302 TSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVG 338
             +VD+  + G +  A  + D M    + V+W T++  
Sbjct: 572 DCVVDLLCRTGLLGRAEELIDSMPFEPSAVTWTTLLAA 609


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 181/487 (37%), Positives = 277/487 (56%), Gaps = 5/487 (1%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           V LD+ + N    A  +   + VG +LHS  +K+G   + FV ++L+++Y  C +   AR
Sbjct: 89  VTLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATAR 148

Query: 218 RVFDEV---LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG 274
           +V D      C D V WN ++S Y    + + A+  F  M  E +  D  T  + + +  
Sbjct: 149 QVLDSAPQGAC-DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASA 207

Query: 275 TLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT 334
             G  K+GR  H LV+     ++  + +SL+ MYAK G ++DA +VF GM  +NVV W +
Sbjct: 208 KAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTS 267

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G+ Q G  +EAV L RDM       D+ T+A+++SSC  +      R VHAY   +G
Sbjct: 268 MISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHG 327

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           +   LS++N+LI+ YSKCG I  A + F  + + D+ +WT++I  +  +GL  E++++F 
Sbjct: 328 LGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFA 387

Query: 455 KMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           +M     V P+ + FL VL++CSHGGLV +G  YF  M   Y + P  EHY C+ DLLGR
Sbjct: 388 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGR 447

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
             LL EA   + +MPI P      + + AC+  G +GLA++ AE++LELEP K   + L+
Sbjct: 448 AKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLL 507

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           SNVYA+   W DV  LR  M ++   K PGCS+IE+ G +H F + D SH +   +Y +L
Sbjct: 508 SNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDGCVHEFFAGDESHLETEAIYNIL 567

Query: 634 CTVFGLM 640
             +  L+
Sbjct: 568 LGISELL 574



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 174/311 (55%), Gaps = 5/311 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--V 126
           A   +++   +  G QLHS  +KLGL +   + N ++++Y  C       ++ D      
Sbjct: 99  AFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGA 158

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + V+WNT+ISG +  G        F +M+ + V LD +T  + L A  +A  ++VGR  
Sbjct: 159 CDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLC 218

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS ++  G G+NC++ S+L+ +Y KCG VEDAR+VF  +  R++V W  M+S Y      
Sbjct: 219 HSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKF 278

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +F  M++ GMK D  T +++V+SC  +G+  LGR +H          ++ V  SL
Sbjct: 279 KEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSL 338

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPD 363
           +DMY+K G+I+ A  +F G+T ++V SW  M++GF  NG   EA+ L   M  +G   P+
Sbjct: 339 IDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPN 398

Query: 364 EVTLASILSSC 374
           EVT   +L+SC
Sbjct: 399 EVTFLGVLTSC 409


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 169/464 (36%), Positives = 285/464 (61%), Gaps = 4/464 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++S+L  CV    I  G+R+H+ ++K  +  + ++ + L+ LY KC  + DAR +FDE+ 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGR 283
            R++V W  M+S Y+       A+ +F  M     + ++FTF++++ SC G+LG  + GR
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF-ETGR 183

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIH + IK++++  + V +SL+DMYAK+G I DA  VF  +  ++VV+   ++ G+ Q G
Sbjct: 184 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 243

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+KL R +       + VT AS+L++   L+     +QVH++ +++G  +++ + N
Sbjct: 244 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLN 303

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVR 462
           +LI+ YSKCG++  A + F S+ E   ++W +++  Y+ HG+++E +E+F+ M   + V+
Sbjct: 304 SLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVK 363

Query: 463 PDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           PDSI +L VLS CSHG L   GL  ++N++     I PD  HY C+ DLLGR G + EA+
Sbjct: 364 PDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAF 423

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           D +  MP  P +   G+ +G+C+VH  + +     +KLLELEP    NY ++SN+YAS  
Sbjct: 424 DFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAG 483

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
            W D+  +R +M++    K PG SW+E+   +HTF +SD +HP+
Sbjct: 484 KWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPR 527



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 213/404 (52%), Gaps = 14/404 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G+++H+H++K      + L+ +++ +Y KC    D   +FDEM  RN+V+W  +IS 
Sbjct: 78  IREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISA 137

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        F  ML  +   +H TF ++L +C  +   E GR++HS  +K  +  +
Sbjct: 138 YSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESH 197

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+L+D+Y K G + DA  VF  +  RD+V    ++S YA   L + A+ +F  +++
Sbjct: 198 MFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI 257

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EGM  +  T++S++ +   L +   G+Q+H  V++      V++  SL+DMY+K GN+  
Sbjct: 258 EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCY 317

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCG 375
           A R+FD M  +  +SWN M+VG+ ++G  RE ++L + M  +    PD +T  ++LS C 
Sbjct: 318 ARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 377

Query: 376 SLSISCETRQVHAYAI--KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE----PD 429
              +     ++    +  K+G++  +     +++   + G +  A   F  +K+    P 
Sbjct: 378 HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKMPFVPT 434

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
              W S++G+   H   +  I V +K+L   + P++     +LS
Sbjct: 435 AAIWGSLLGSCRVHSDVEIGIIVGQKLLE--LEPENAGNYVILS 476



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 147/281 (52%), Gaps = 13/281 (4%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G +  +  + S++N C +  + + G+++H  +IK  +   V + T L+ +Y K   
Sbjct: 53  MAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC 112

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           + DA  +FD M  +NVVSW  M+  + Q G   EA+ L  +ML+    P+  T A+IL+S
Sbjct: 113 LGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 172

Query: 374 C-GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C GSL      RQ+H+ AIK   ++ + + ++L++ Y+K G I  A   F  + E D+V 
Sbjct: 173 CYGSLGFET-GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 231

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            T+II  YA  GL +E++++F ++    +  +S+ +  VL+A S    ++ G +  +   
Sbjct: 232 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHS--- 288

Query: 493 SDYHILPDSEH-----YTCLTDLLGRVGLLVEAYDLLASMP 528
              H+L   ++        L D+  + G +  A  +  SMP
Sbjct: 289 ---HVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP 326



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 14/229 (6%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E  +S    Y+  L   +    L  GKQ+HSH+++ G  + + L N ++ +Y KC     
Sbjct: 258 EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCY 317

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACV 173
             ++FD M  R  ++WN ++ G    G    V   F+ M  +N V+ D IT+ ++L  C 
Sbjct: 318 ARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 377

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV-- 229
                ++G  +   ++    G+   +     +VDL G+ G VE+A   FD +     V  
Sbjct: 378 HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKMPFVPT 434

Query: 230 --LWNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
             +W  ++ SC   + +  G I    L+ LE    G+Y   S+L  S G
Sbjct: 435 AAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAG 483


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 174/523 (33%), Positives = 296/523 (56%), Gaps = 20/523 (3%)

Query: 128 NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++ +WN++I+     G ++     F  M   ++  +  TF   +++C    D+  G+++H
Sbjct: 50  SVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIH 109

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
                 G+G + FV+SAL+D+Y KCG++ DAR++FDE+  R++V W  M+S Y  N    
Sbjct: 110 QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAR 169

Query: 246 GAIAVFNLMRL-----------EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
            A+ +F    L            G+  D      ++++C  +    +   +HGL +K+ F
Sbjct: 170 EAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGF 229

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           +  + V  +L+D YAK G I  + +VFDGM   +V SWN+++  + QNG   EA  L  D
Sbjct: 230 EGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSD 289

Query: 355 MLQ-GSFCPDEVTLASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           M++ G    + VTL+++L +C   G+L I    + +H   +K  ++  L +  ++++ Y 
Sbjct: 290 MVKRGEVRYNAVTLSAVLLACAHSGALQIG---KCIHDQVVKMELEDNLVVGTSIVDMYC 346

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  A + F  +K  ++ +WT ++  Y  HG  KE+++VF +M+   ++P+ I F+ 
Sbjct: 347 KCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVS 406

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           VL+ACSH GL+ EG  +FN M  ++ + P  EHY+C+ DLLGR G L EAY L+  M ++
Sbjct: 407 VLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVK 466

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P     G+ +GAC++H ++ L + +A KL +L+PS    Y L+SN+YA    W DV R+R
Sbjct: 467 PDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMR 526

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            +M+++   K PG S +E  G +H F+  D+ HPQ   +Y  L
Sbjct: 527 ILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYL 569



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 205/406 (50%), Gaps = 24/406 (5%)

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
           S H   S +   +K  +    L  GKQ+H      G  + + + + ++ +Y KC   +D 
Sbjct: 81  SLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDA 140

Query: 118 EKLFDEMRVRNIVTWNTLISGIIN---CGGNVTPYFRRMLLDNVRLDHIT---------- 164
            KLFDE+  RN+V+W ++ISG +        V  +   +L+D    D I           
Sbjct: 141 RKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVL 200

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
              ++ AC +     V   +H   +K GF     V + L+D Y KCG +  +R+VFD + 
Sbjct: 201 LGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME 260

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGR 283
             D+  WN +++ YA N L   A ++F+ M   G ++ +  T S+++ +C   G+ ++G+
Sbjct: 261 ETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGK 320

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
            IH  V+K   + +++V TS+VDMY K G ++ A + FD +  KNV SW  MV G+G +G
Sbjct: 321 CIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHG 380

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGVQAF 398
            G+EA+K+  +M++    P+ +T  S+L++C    +  E      +    + ++ G++ +
Sbjct: 381 HGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHY 440

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
               + +++   + G +  A      +K +PD + W S++GA   H
Sbjct: 441 ----SCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIH 482


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 193/588 (32%), Positives = 313/588 (53%), Gaps = 33/588 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++ K +H+ I+  GL  ++    ++L + V+         LFD++   N   +N LI G
Sbjct: 52  MKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRG 111

Query: 139 IINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             N    +     FR+M+      +  TF  +L+AC           +H+  +K+G G +
Sbjct: 112 YSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPH 171

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +A++  Y  C  +  AR+VFD++  R +V WN M++ Y+     D AI +F  M  
Sbjct: 172 ACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQ 231

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN--- 313
            G++ D FT  SL+++     +  LGR +H  ++    ++D +V  +L+DMYAK G+   
Sbjct: 232 LGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQF 291

Query: 314 ----------------------------IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
                                       +++A ++F+ M  KNVVSWN+++    Q G  
Sbjct: 292 AKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQY 351

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
            EAV+L   M      PD+ TL SILS C +       +Q H Y   N +   +++ N+L
Sbjct: 352 TEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSL 411

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y+KCG++  A+  F  + E ++V+W  IIGA A HG  +E+IE+F+ M +  + PD 
Sbjct: 412 IDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDE 471

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I F  +LSACSH GLV  G  YF++MIS + I P  EHY C+ DLLGR G L EA  L+ 
Sbjct: 472 ITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQ 531

Query: 526 SMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585
            MP++P     GA +GAC+++G++ +AK   ++LLEL       Y L+SN+Y+  + W D
Sbjct: 532 KMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDD 591

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           + ++RK+M D+   K    S+IEI G  + F+  D+ H  +  +Y++L
Sbjct: 592 MKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSIL 639



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 210/427 (49%), Gaps = 43/427 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A   F  +   +H+  +KLG+     +QN +L  YV C+      ++FD++  R I
Sbjct: 144 LKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTI 203

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN++I+G    G        F+ ML   V  D  T  SLL A  +  ++++GR +H +
Sbjct: 204 VSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLY 263

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I+  G  ++  V++AL+D+Y KCG ++ A+ VFD++L +D+V W  MV+ YA   L + A
Sbjct: 264 IVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENA 323

Query: 248 IAVFNLMRLE-------------------------------GMKGDYFTFSSLVNSCGTL 276
           + +FN M ++                               G+  D  T  S+++ C   
Sbjct: 324 VQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNT 383

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G   LG+Q H  +      + V +  SL+DMYAK G +  A  +F GM  KNVVSWN ++
Sbjct: 384 GDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVII 443

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR-----QVHAYAI 391
                +G G EA+++ + M      PDE+T   +LS+C    +    R      +  + I
Sbjct: 444 GALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRI 503

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESI 450
             GV+ +      +++   + G +  A+     +  +PD+V W +++GA   +G  + + 
Sbjct: 504 SPGVEHY----ACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAK 559

Query: 451 EVFEKML 457
           ++ +++L
Sbjct: 560 QIMKQLL 566



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 4/263 (1%)

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           T   L++ C ++   KL   +H  +I       V+    L+ +  + G++  A  +FD +
Sbjct: 41  TLHHLLDQCSSMKRLKL---VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQI 97

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
              N   +N ++ G+  + D  +++ L R M+     P++ T   +L +C +     E  
Sbjct: 98  PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAV 157

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            VHA AIK G+     ++NA++ AY  C  I  A Q F  + +  +V+W S+I  Y+  G
Sbjct: 158 IVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMG 217

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
              E+I +F++ML   V  D    + +LSA S    +  G R+ +L I    +  DS   
Sbjct: 218 FCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLG-RFVHLYIVITGVEIDSIVT 276

Query: 505 TCLTDLLGRVGLLVEAYDLLASM 527
             L D+  + G L  A  +   M
Sbjct: 277 NALIDMYAKCGHLQFAKHVFDQM 299


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 283/473 (59%), Gaps = 1/473 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +++ + ACV+   +  GR++H+ ++K  +    ++++ L+ LY +CG ++DAR V D + 
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R++V W  M+S Y+ +     A+ +F  M   G K + FT ++++ SC    S +   Q
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H LV+K +F+  + V +SL+DMY K+GNI +A +VFD +  ++ VS   ++ G+ Q G 
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA+ L R +       + VT  ++L+S   L+     +QVH   ++  +  F+ ++N+
Sbjct: 224 DDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNS 283

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ YSKCG +  + + F ++ +   ++W +++  Y  HG+ +E +++F  M +  V+PD
Sbjct: 284 LIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTM-TEEVKPD 342

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           S+  L VLS CSHGGLV EGL  F+L++ + + +    HY C+ DLLGR G L +A DL+
Sbjct: 343 SVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLI 402

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
             MP EP     G+ +GAC+VH ++ + +  A+KLL++EP    NY ++SN+YA+   W 
Sbjct: 403 EHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWK 462

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           DV R+RK+M +N   K P  SWI +   IHTF SS+R HP+   + A +  V+
Sbjct: 463 DVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVY 515



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 221/418 (52%), Gaps = 18/418 (4%)

Query: 42  RSVLSSQLRNSGTIHESTHSAHSF-----------YSQALKVSAKFGFLQQGKQLHSHIM 90
           R  +SS +R   ++  + H+A S            Y  A+    +   L +G+Q+H+H++
Sbjct: 9   RVAVSSLVRWDMSVVAARHAASSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMV 68

Query: 91  KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTP 148
           K      + L  +++ +YV+C A DD   + D M  RN+V+W  +ISG    G       
Sbjct: 69  KARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALE 128

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            F RML    + +  T  ++L +C     I+   ++HS ++K  F  + FV S+L+D+YG
Sbjct: 129 LFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYG 188

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           K G +++AR+VFD +  RD V    ++S YA   L D A+ +F  +   GM+ +Y TF++
Sbjct: 189 KSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTT 248

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           L+ S   L S   G+Q+HGL++++     +++  SL+DMY+K G +  + RVFD M  ++
Sbjct: 249 LLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRS 308

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
            +SWN M++G+G++G G+E V+L R M +    PD VTL ++LS C    +  E   +  
Sbjct: 309 AISWNAMLMGYGRHGIGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFD 367

Query: 389 YAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
             +K    A + I +   +I+   + G +  AL     +  EP    W S++GA   H
Sbjct: 368 LIVKEQ-NAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 149/279 (53%), Gaps = 9/279 (3%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           + + G    +  + + + +C    +   GRQ+H  ++K  +   V +AT L+ +Y + G 
Sbjct: 32  LAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGA 91

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +DDA  V DGM  +NVVSW  M+ G+ Q+G   EA++L   ML+     +E TLA++L+S
Sbjct: 92  LDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTS 151

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C       +  QVH+  +K   ++ + + ++L++ Y K G+I  A + F  + E D V+ 
Sbjct: 152 CPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSC 211

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493
           T+II  YA  GL  E++++F ++ S  ++ + + F  +L++ S    ++ G +   L++ 
Sbjct: 212 TAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILR 271

Query: 494 D----YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
                + +L +S     L D+  + G L+ +  +  +MP
Sbjct: 272 KELPFFIVLQNS-----LIDMYSKCGKLLYSRRVFDNMP 305


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 295/529 (55%), Gaps = 7/529 (1%)

Query: 114 FDDMEKLFDEMRVRNIVTWNTLI---SGIINCGGNVTPY-FRRMLLDNVRLDHITFNSLL 169
           F    +L  +++  +I  W++LI   SG I     ++   +R M  + V     TF  LL
Sbjct: 52  FRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLL 111

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
           +A  +  D     + H+ I+K G   + FV ++L+  Y   G  + A R+FD    +D+V
Sbjct: 112 KAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  M+  +  N     A+  F  M+  G+  +  T  S++ + G +   + GR +HGL 
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230

Query: 290 IKQS-FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           ++      DV + +SLVDMY K    DDA +VFD M ++NVV+W  ++ G+ Q+    + 
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKG 290

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + +  +ML+    P+E TL+S+LS+C  +      R+VH Y IKN ++   +    LI+ 
Sbjct: 291 MLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDL 350

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y KCG +  A+  F  + E ++ TWT++I  +A HG ++++ ++F  MLS  V P+ + F
Sbjct: 351 YVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTF 410

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VLSAC+HGGLV EG R F  M   +++   ++HY C+ DL GR GLL EA  L+  MP
Sbjct: 411 MAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMP 470

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
           +EP +   GA  G+C +H    L K+AA ++++L+PS    Y L++N+Y+  + W +VAR
Sbjct: 471 MEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVAR 530

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP-QAVHMYAMLCTV 636
           +RK M+D    K PG SWIE+ G++  F++ D   P ++  +Y  L TV
Sbjct: 531 VRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTV 579



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 200/413 (48%), Gaps = 35/413 (8%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
            +R +G I  S H+         K+     F     Q H+HI+K GL +   ++N ++  
Sbjct: 94  HMRRNGVI-PSRHTFPPLLKAVFKLRDSNPF-----QFHAHIVKFGLDSDPFVRNSLISG 147

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y     FD   +LFD    +++VTW  +I G +  G       YF  M    V  + +T 
Sbjct: 148 YSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTV 207

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
            S+L+A  + +D+  GR +H   L+ G    + F+ S+LVD+YGKC   +DA++VFDE+ 
Sbjct: 208 VSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP 267

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R++V W  +++ Y  +   D  + VF  M    +  +  T SS++++C  +G+   GR+
Sbjct: 268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRR 327

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H  +IK S +++    T+L+D+Y K G +++A  VF+ +  KNV +W  M+ GF  +G 
Sbjct: 328 VHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGY 387

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            R+A  L   ML     P+EVT  ++LS+C            H   ++ G + FLS++  
Sbjct: 388 ARDAFDLFYTMLSSHVSPNEVTFMAVLSACA-----------HGGLVEEGRRLFLSMKGR 436

Query: 405 LINAYSKCGSIAGALQCFGS--------------VKEPDLVTWTSIIGAYAFH 443
             N   K    A  +  FG                 EP  V W ++ G+   H
Sbjct: 437 F-NMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLH 488


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 303/559 (54%), Gaps = 4/559 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           + + L   + F  L  GK LH+H++  G    L L+  V+ +Y KC+   D  K+ +   
Sbjct: 221 FVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTP 280

Query: 126 VRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++  W TLISG             FR M L  +  ++ T++SLL A      +++G +
Sbjct: 281 EYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQ 340

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVE-DARRVFDEVLCRDLVLWNVMVSCYALNC 242
            HS ++ VG   + ++ +ALVD+Y KC  +  +A +VF E+   +++ W  +++ +A   
Sbjct: 341 FHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKR 400

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
           L D +  +F  M+  G++ + FT S+++ +C    S      +HG +IK   D+D+ VA 
Sbjct: 401 LED-SFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVAN 459

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVD YA  G ID+A  V   M  ++ +++  +     Q G    A+K+L  M       
Sbjct: 460 ALVDTYAGVGMIDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKM 519

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           DE +LAS LS+   L      +Q+H Y++K+G Q   S+ N+L++ YSKCGSI  A + F
Sbjct: 520 DEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAF 579

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
             + EPD  +W  +I  ++++GL   ++  F+ M    V+PDSI  L ++SACSHGGL+ 
Sbjct: 580 KDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLE 639

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
            GL YF+ M  +YHI P  +HY CL DLLGR G L EA  ++  M  +P S      + A
Sbjct: 640 LGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFKPDSLICKTLLNA 699

Query: 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602
           C +HG++ L +  A + LEL+PS P  Y L++N+Y +        + R++MR+    + P
Sbjct: 700 CNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSP 759

Query: 603 GCSWIEIAGEIHTFVSSDR 621
           G  W+EI   +H F + ++
Sbjct: 760 GQCWMEIRSRVHHFSAGEK 778



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 233/458 (50%), Gaps = 9/458 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++G  +HS I+KLGL + L L N +L +Y K         LFDEM  R++V+W T++S 
Sbjct: 30  LKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSS 89

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                   +    F  M+      +  T +S LR+C    + E G ++H   +K+G  +N
Sbjct: 90  HTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMN 149

Query: 197 CFVSSALVDLYGKCGFVE-DARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
            FV ++LV+ Y KCG    +A ++   V    D+V W  M+S    N     A  ++  M
Sbjct: 150 RFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKM 209

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
              G+  + FTF  L+ +  +      G+ +H  +I    +L++++ T++VDMY+K   +
Sbjct: 210 IESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRM 269

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
            DA +V +     +V  W T++ GF QN   REA+ + RDM      P+  T +S+L++ 
Sbjct: 270 VDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNAS 329

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI-AGALQCFGSVKEPDLVTW 433
            S+       Q H+  I  G++  L I NAL++ Y KC  I   A++ F  +  P+++ W
Sbjct: 330 SSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCW 389

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG-GLVSEGLRYFNLMI 492
           TS+I  +A   L ++S ++F +M +  VRP+S     +L ACS    LV   + + +++ 
Sbjct: 390 TSLIAGFAEKRL-EDSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIK 448

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +   I  D      L D    VG++ EA+ ++ +M + 
Sbjct: 449 TKVDI--DIAVANALVDTYAGVGMIDEAWSVIGTMNLR 484


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 291/564 (51%), Gaps = 48/564 (8%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N +L  YVK         LF++M  +++V+WN ++SG    G        F +ML+ N  
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKN-- 183

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL---NCFVSSALVDLYGKCGFVEDA 216
              I++N LL A VQ   IE  RRL  F  K+ + +   NC +       Y +   ++DA
Sbjct: 184 --EISWNGLLSAYVQNGRIEDARRL--FDSKMDWEIVSWNCLMGG-----YVRKKRLDDA 234

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R +FD +  RD + WN+M++ YA N L   A  +F  + +     D F ++++V+     
Sbjct: 235 RSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSGFVQN 290

Query: 277 GS-SKLGRQIHGLVIKQSFDLDVLVA--------------------------TSLVDMYA 309
           G   +  R    +  K     + ++A                           ++V  YA
Sbjct: 291 GMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYA 350

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           + GNID A  +FD M  ++ +SW  M+ G+ Q+G   EA+ L   M +     +   LA 
Sbjct: 351 QCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALAC 410

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
            LSSC  ++     +Q+H   +K G Q      NAL+  Y KCGSI  A   F  + E D
Sbjct: 411 ALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKD 470

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +V+W ++I  YA HG  KE++ +FE M    ++PD +  + VLSACSH G V +G+ YFN
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFN 529

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            M  +Y I  +++HYTC+ DLLGR G L EA +L+ SMP  P + T GA +GA ++HG  
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT 589

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            L + AAEK+ E+EP     Y L+SN+YA+   W +V  +R  MRD    KVPG SW+EI
Sbjct: 590 ELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEI 649

Query: 610 AGEIHTFVSSDRSHPQAVHMYAML 633
             + H F   D SHP+A  +YA L
Sbjct: 650 QNKTHIFTVGDCSHPEAERIYAYL 673



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 60/304 (19%)

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL--GRQ 284
           D+V WN  +S Y      + A++VFN MR    +    T++++++  G L ++K    R+
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMIS--GYLSNNKFDCARK 112

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
               V ++  D D++    ++  Y KNGN+  A  +F+ M  K+VVSWN M+ GF QNG 
Sbjct: 113 ----VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA K+   ML                                  +KN +       N 
Sbjct: 169 VEEARKIFDQML----------------------------------VKNEISW-----NG 189

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++AY + G I  A + F S  + ++V+W  ++G Y       ++  +F++M    VR D
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM---PVR-D 245

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I++  +++  +  GL+SE  R F  +      + D   +T +     + G+L EA  + 
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTAMVSGFVQNGMLDEATRIF 300

Query: 525 ASMP 528
             MP
Sbjct: 301 EEMP 304



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 177/443 (39%), Gaps = 93/443 (20%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           AR+VF+++  RDL+ WNVM+S Y  N     A A+FN M     + D  +++++++    
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQ 165

Query: 276 LGSSKLGRQI------------HGL---------------VIKQSFDLDVLVATSLVDMY 308
            G  +  R+I            +GL               +     D +++    L+  Y
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM------------- 355
            +   +DDA  +FD M  ++ +SWN M+ G+ QNG   EA +L  ++             
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 356 --LQGSFCPDEVTLASILSSCGSLSISCETR-QVHAYAIKNGVQAF-------LSIENAL 405
             +Q     +   +   +     +S +      V +  I+   + F        S  N +
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTM 345

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           +  Y++CG+I  A   F  + + D ++W ++I  YA  G S+E++ +F KM       + 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 466 IAFLEVLSACS-----------HGGLVSEGLR--YF--NLMISDYHILPD-SEHYTCLTD 509
            A    LS+C+           HG LV  G +  Y   N +++ Y       E +    D
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED 465

Query: 510 L--------------LGRVGLLVEAYDLLASMP--IEPRSDTLGAFIGACKVHGSIGLAK 553
           +                R G   EA  L  SM   I+P   TL   + AC   G +    
Sbjct: 466 ITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFV---- 521

Query: 554 WAAEKLLELEPSKPVNYALVSNV 576
              +K +E   S   NY + +N 
Sbjct: 522 ---DKGMEYFNSMYQNYGITANA 541



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 48/238 (20%)

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D D++     +  Y + G  + A  VF+GM  ++ V++N M+ G+  N     A K+   
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           M      PD                    R + ++             N +++ Y K G+
Sbjct: 117 M------PD--------------------RDLISW-------------NVMLSGYVKNGN 137

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           ++ A   F  + E D+V+W +++  +A +G  +E+ ++F++ML      + I++  +LSA
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSA 193

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
               G + +  R F+  + D+ I+     + CL     R   L +A  L   MP+  +
Sbjct: 194 YVQNGRIEDARRLFDSKM-DWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVRDK 246



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A+   L+ GKQLH  ++K G        N +L +Y KC + ++   +F+++  ++
Sbjct: 411 ALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKD 470

Query: 129 IVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR-LH 185
           IV+WNT+I+G      G      F  M +  ++ D +T   +L AC     ++ G    +
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGFVDKGMEYFN 529

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           S     G   N    + ++DL G+ G +++A
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/569 (32%), Positives = 305/569 (53%), Gaps = 15/569 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L V A  G +  G  +H   +KLGL  ++ + N ++++Y KC   ++ +  F +   +N+
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314

Query: 130 VTWNTLISGIINCGGNVTPYFR-----RMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           V+WNT+IS   +  G+V   F      ++  + ++ + +T  ++L AC+    +   + L
Sbjct: 315 VSWNTMISAF-SLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKEL 373

Query: 185 HSFILKVGFGLNCF----VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           H +  +     +CF    +S+A +  Y KCG +  A +VF  +  + +  WN ++  +A 
Sbjct: 374 HGYSFR-----HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQ 428

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
           N     A+ +   M   G + D+FT SSL+ +C  L S + G++IHG V++   + D  V
Sbjct: 429 NGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFV 488

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            TSL+  Y   G    A  +FD M  KN+VSWN M+ G+ QNG   E++ L R  L    
Sbjct: 489 GTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGI 548

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
              E+ + S+  +C  LS     ++ H Y +K        +  ++I+ Y+K G I  + +
Sbjct: 549 QSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRK 608

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +K+ ++ +W +II A+  HG  KE+IE++E+M      PD   ++ +L AC H GL
Sbjct: 609 VFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGL 668

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540
           V EGL+YF  M +   I P  EHY CL D+L R G L +A  L+  MP E  +    + +
Sbjct: 669 VEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLL 728

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            +C+  G++ + +  A+KLLELEP K  NY L+SN+YA    W  V R+R+MM++    K
Sbjct: 729 RSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQK 788

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
             GCSWIE+ G +++FV  D   P++  +
Sbjct: 789 DAGCSWIEVGGRVYSFVVGDSLQPKSAEI 817



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 222/406 (54%), Gaps = 8/406 (1%)

Query: 79  LQQGKQLHSHIM-KLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           ++ G++LH  +       N   L  +++ +Y  C +  D   +FD M  +N++ WN L+S
Sbjct: 59  IETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVS 118

Query: 138 GIINCG--GNVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           G    G  G+V   F  ++ D + + D+ TF S+++AC    D+ +G  +H  ++K+G  
Sbjct: 119 GYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLV 178

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG-DGAIAVFNL 253
           L+ FV +ALV +YGKCG V++A +VFD +   +LV WN M+  ++ N    D    +  +
Sbjct: 179 LDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEM 238

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           +  EG+  D  T  +++  C   G   +G  IHGL +K     +V+V  ++V MY+K G 
Sbjct: 239 LGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGY 298

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQG-SFCPDEVTLASIL 371
           +++A   F     KNVVSWNTM+  F   GD  EA  LL++M +QG     +EVT+ ++L
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVL 358

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +C         +++H Y+ ++  Q  + + NA I AY+KCG++  A + F  + +  + 
Sbjct: 359 PACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVS 417

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           +W ++IG +A +G  ++++ +  +M     +PD      +L AC+H
Sbjct: 418 SWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 5/313 (1%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFV-SSALVDLYGKCGFVEDARRVFDEVLCR 226
           LL+AC    DIE GRRLH F+       N +V ++ L+ +Y  CG   D+R VFD +  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           +L+ WN +VS Y  N L    + VF +L+     + D FTF S++ +CG +   +LG  I
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           HG+VIK    LDV V  +LV MY K G +D+A +VFD M   N+VSWN+M+  F +NG  
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFS 228

Query: 346 REAVKLLRDML-QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           R++  LL +ML +    PD VT+ +IL  C           +H  A+K G+   + + NA
Sbjct: 229 RDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNA 288

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM--LSHAVR 462
           ++  YSKCG +  A   F      ++V+W ++I A++  G   E+  + ++M      ++
Sbjct: 289 MVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348

Query: 463 PDSIAFLEVLSAC 475
            + +  L VL AC
Sbjct: 349 ANEVTILNVLPAC 361



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 165/333 (49%), Gaps = 20/333 (6%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A    LQ GK++H ++++ GL     +   +L  Y+ C        LFD M+ 
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKD 514

Query: 127 RNIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           +N+V+WN +ISG    G    PY     FR+ L + ++   I   S+  AC Q   + +G
Sbjct: 515 KNLVSWNAMISGYSQNG---LPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLG 571

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           +  H ++LK     + FV  +++D+Y K G ++++R+VFD +  +++  WN ++  + ++
Sbjct: 572 KEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIH 631

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL---DV 298
             G  AI ++  M+  G   D FT+  ++ +CG  G  + G +    +  Q+F+L    +
Sbjct: 632 GHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEM--QNFNLIEPKL 689

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVG---FGQNGDGREAVKLLR 353
                L+DM A+ G +DDA R+ + M   A N + W++++     FG    G +  K L 
Sbjct: 690 EHYACLIDMLARAGRLDDALRLVNEMPEEADNRI-WSSLLRSCRTFGALEIGEKVAKKLL 748

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           + L+     + V L+++ +  G        RQ+
Sbjct: 749 E-LEPDKAENYVLLSNLYAGLGKWDGVRRVRQM 780


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 201/664 (30%), Positives = 338/664 (50%), Gaps = 46/664 (6%)

Query: 22  LTPALYQNQTTTITNAQKHDRSVLSSQLR--NSGTIHEST--HSAHSFYSQALKVSAKFG 77
           L+ +L+++     ++   HD     S LR  +S  + +    HSA S  S  + V A   
Sbjct: 2   LSESLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRA--- 58

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           FL  G Q+H+H +  G+     L  +++  Y      ++ + + +   + + + WN LI+
Sbjct: 59  FLA-GVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIA 117

Query: 138 GIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
                     V   ++RM+   +R D  T+ S+L+AC +  D+  GR +H  I    +  
Sbjct: 118 SYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKS 177

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + +V +AL+ +Y +   +  ARR+FD +  RD V WN +++CYA   +   A  +F+ M 
Sbjct: 178 SLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMW 237

Query: 256 LEGMK----------------GDYFTFSSLVN-------------------SCGTLGSSK 280
             G++                G+Y     L++                   +C  +G+ +
Sbjct: 238 FSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIR 297

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
           LG++IHGL I  S+D    V  +L+ MY+K  ++  A  VF      ++ +WN+++ G+ 
Sbjct: 298 LGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYA 357

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFL 399
           Q     EA  LLR+ML   F P+ +TLASIL  C  ++     ++ H Y ++    + + 
Sbjct: 358 QLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYT 417

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            + N+L++ Y+K G I  A Q    + + D VT+TS+I  Y   G    ++ +F++M   
Sbjct: 418 MLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRS 477

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD +  + VLSACSH  LV EG R F  M  +Y I P  +H++C+ DL GR G L +
Sbjct: 478 GIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAK 537

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A D++ +MP +P   T    + AC +HG+  + KWAAEKLLE++P  P  Y L++N+YA+
Sbjct: 538 AKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAA 597

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGL 639
              W  +A +R +MRD    K PGC+WI+       F   D S P+A + Y +L  +  L
Sbjct: 598 AGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQL 657

Query: 640 MEEN 643
           M++N
Sbjct: 658 MKDN 661


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 333/610 (54%), Gaps = 18/610 (2%)

Query: 10  IFTVHFKRPLSY-LTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAH----- 63
           I    F R  S  LTP+   N ++  T   +        QL ++  I  STHS+      
Sbjct: 4   ILKRQFSRHASLCLTPS---NSSSAPTKQSRILELCKLGQLTDAIRILNSTHSSEISAKS 60

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA-FDDMEKLFD 122
           + Y+  L+   K      G Q H+H++K GL    ++ N +L +Y K      +  ++FD
Sbjct: 61  NLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFD 120

Query: 123 EMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            M V++ ++W +++SG +    +V     F  M+   ++ +  T +S ++AC +  ++ +
Sbjct: 121 GMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRL 180

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           GR  H  ++  GF  N  +SS L  +YG      DARRVFDE+   D++ W  ++S ++ 
Sbjct: 181 GRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSK 240

Query: 241 NCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
           N L + A+ +F  M R +G+  D  TF +++ +CG L   K G++IHG +I      +V+
Sbjct: 241 NDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVV 300

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V +SL+DMY K+G++ +A +VF+GM  KN+VSW+ ++ G+ QNG+  +A+++ R+M +  
Sbjct: 301 VESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREMEE-- 358

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              D     ++L +C  L+     +++H   ++ G    + +E+ALI+ Y K G I  A 
Sbjct: 359 --KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYAS 416

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + +  +   +++TW +++ A A +G  +E++  F  M+   ++PD I+F+ VL+AC H G
Sbjct: 417 RVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTG 476

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EG  YF LM   Y I P +EHY+C+ DLLGR GL  EA +LL        +   G  
Sbjct: 477 LVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVL 536

Query: 540 IGACKVH-GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
           +G C  +  +  +A+  A++++ELEP   ++Y L+SN+Y +     D  ++RK+M     
Sbjct: 537 LGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRKLMVRRGV 596

Query: 599 HKVPGCSWIE 608
            K  G SWI+
Sbjct: 597 AKTVGQSWID 606


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 317/642 (49%), Gaps = 75/642 (11%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           Q H+ I+K G  N   +  +++  Y     F+D + +   +    + ++++LI  +    
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 144 --GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
                   F RM    +  D     +L + C +    + G+++H      G  ++ FV  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVL------------------------------- 230
           +L  +Y +CG + DAR+VFD +  +D+V                                
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 231 ----WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
               WN ++S +  +     A+ +F  M   G   D  T SS++ S G   +  +GRQIH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD--------------------GMTA 326
           G VIKQ    D  V ++++DMY K+G++    ++FD                    G+  
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 327 K---------------NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           K               NVVSW +++ G  QNG   EA++L R+M      P+ VT+ S+L
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +CG+++     R  H +A++  +   + + +ALI+ Y+KCG I  +   F  +   +LV
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLV 455

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
            W S++  Y+ HG +KE + +FE ++   ++PD I+F  +LSAC   GL  EG +YFN+M
Sbjct: 456 CWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMM 515

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
             +Y I P  EHY+C+ +LLGR G L EAYDL+  +P EP S   GA + +C++  ++ L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
           A+ AA+KL  LEP  P  Y L+SN+YA++  W +V  +R  M      K PGCSWI++  
Sbjct: 576 AEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLD 653
           +++T ++ D+SHPQ   +   +  +    EE   SGH   LD
Sbjct: 636 KVYTLLACDKSHPQIDQITEKMDEI---SEEMRKSGHRPNLD 674



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 199/444 (44%), Gaps = 74/444 (16%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR-- 127
            KV A+    + GKQ+H      GL     +Q  + H+Y++C    D  K+FD M  +  
Sbjct: 123 FKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDV 182

Query: 128 ---------------------------------NIVTWNTLISGIINCG--GNVTPYFRR 152
                                            NIV+WN ++SG    G        F++
Sbjct: 183 VTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQK 242

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M       D +T +S+L +   ++++ +GR++H +++K G   +  V SA++D+YGK G 
Sbjct: 243 MHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGH 302

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL------------------- 253
           V    ++FDE    +  + N  ++  + N L D A+ +F L                   
Sbjct: 303 VYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAG 362

Query: 254 ----------------MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
                           M++ G+K +  T  S++ +CG + +   GR  HG  ++     D
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDD 422

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           V V ++L+DMYAK G I  +  VF+ M  KN+V WN+++ G+  +G  +E + +   +++
Sbjct: 423 VHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMR 482

Query: 358 GSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
               PD ++  S+LS+CG + ++ E  +  +  + + G++  L   + ++N   + G + 
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 417 GALQCFGSVK-EPDLVTWTSIIGA 439
            A      +  EPD   W +++ +
Sbjct: 543 EAYDLIKEIPFEPDSCVWGALLNS 566



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 172/405 (42%), Gaps = 86/405 (21%)

Query: 79  LQQGKQLHSHIMKLGLCNK-------LSLQNQVLHVYVKCKAFDDMEK------------ 119
           L  G+Q+H +++K GL          L +  +  HVY   K FD+ E             
Sbjct: 268 LNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITG 327

Query: 120 ---------------LFDEMRVR-NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLD 161
                          LF E ++  N+V+W ++I+G    G ++     FR M +  V+ +
Sbjct: 328 LSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
            +T  S+L AC     +  GR  H F ++V    +  V SAL+D+Y KCG ++ ++ VF+
Sbjct: 388 RVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFN 447

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  ++LV WN +++ Y+++      +++F  +    +K D+ +F+SL+++CG +G +  
Sbjct: 448 MMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLT-- 505

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-----WNTMV 336
                                            D+  + F+ M+ +  +      ++ MV
Sbjct: 506 ---------------------------------DEGWKYFNMMSEEYGIKPRLEHYSCMV 532

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG-----SLSISCETRQVHAYAI 391
              G+ G  +EA  L++++    F PD     ++L+SC       L+     +  H    
Sbjct: 533 NLLGRAGKLQEAYDLIKEI---PFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPE 589

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
             G    +S   A    +++  SI   ++  G  K P   +W  +
Sbjct: 590 NPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPG-CSWIQV 633


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/571 (32%), Positives = 303/571 (53%), Gaps = 9/571 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +Q+HS  ++ G      + + ++ +Y +C +    E++F  M   ++V + +L+S +   
Sbjct: 156 EQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRN 215

Query: 143 G--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G          +M    ++ +  T  S+L  C +     +G ++H ++LKV    + + S
Sbjct: 216 GELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRG----IGEQIHGYMLKVMGSQSVYAS 271

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           +AL+D Y + G    A+ VF+ +  +++V W  M+     +   D A+ VF+ M  EG++
Sbjct: 272 TALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQ 331

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            + F FS  +++CG++    LGRQIH   IK+    D+ V+ +L+ MY ++G + +   V
Sbjct: 332 PNEFAFSIALSACGSVC---LGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAV 388

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
              +   ++VSW   +    QNG   +AV LL  M    F P++   +S LSSC  L++ 
Sbjct: 389 LGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALL 448

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
            + RQ+H  A+K G    +   NALIN YSKCG I  A   F  +   D+++W S+I   
Sbjct: 449 HQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGL 508

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG +  ++E F +M S   RPD   FL VL  C+H GLV EG  +F  M   Y + P 
Sbjct: 509 AQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPT 568

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
             HY C+ D+LGR G   EA  ++ +MP EP        + +CK+H ++ + K AA+KL+
Sbjct: 569 PSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLM 628

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           EL      +Y L+SN+YA    W D  R+R+ M +    K  G SWIE+  E++TFV+ D
Sbjct: 629 ELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKNEVNTFVAGD 688

Query: 621 RSHPQAVHMYAMLCTVFGLMEENNVSGHCNV 651
            SHP +  +Y ML  +  +M++ ++  H  +
Sbjct: 689 MSHPDSTSIYQMLAELLVVMQDTDLDVHMQI 719



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 201/392 (51%), Gaps = 24/392 (6%)

Query: 107 VYVKCKAFDDMEK---------LFDEMRVRNIVTWNTLISGIINCGGNVTP-----YFRR 152
           V + CK  D + K         LFD M  +N+V W T ISG   C  N  P      F  
Sbjct: 70  VVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISG---CTRNGRPEAAATMFAD 126

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML   V  +    N+ L AC  A  + +G ++HS  ++ GF  + ++ S L++LY +CG 
Sbjct: 127 MLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGS 186

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +  A  VF  +   D+V +  +VS    N     A+ V   M  +G++ +  T +S++  
Sbjct: 187 LRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAE 246

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C       +G QIHG ++K      V  +T+L+D Y++ G+   A  VF+ + +KNVVSW
Sbjct: 247 C----PRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSW 302

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
            +M+    ++G   +A+++  +M+     P+E   +  LS+CGS+   C  RQ+H  AIK
Sbjct: 303 CSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSV---CLGRQIHCSAIK 359

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
             +   + + NAL++ Y + G ++      G ++ PDLV+WT+ I A   +G S++++ +
Sbjct: 360 RDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVAL 419

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             +M S    P+  AF   LS+C+   L+ +G
Sbjct: 420 LLQMHSEGFTPNDYAFSSGLSSCADLALLHQG 451



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 175/370 (47%), Gaps = 14/370 (3%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           K G + DA  +FD +  +++V W   +S    N   + A  +F  M   G+  + F  ++
Sbjct: 82  KSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNA 141

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            + +C   G+  LG Q+H L ++  F  D  + + L+++Y++ G++  A  VF  M A +
Sbjct: 142 ALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPD 201

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VV + ++V    +NG+   AV +L  M +    P+E T+ S+L+ C    I     Q+H 
Sbjct: 202 VVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR-GIG---EQIHG 257

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           Y +K      +    ALI+ YS+ G    A   F +++  ++V+W S++      G   +
Sbjct: 258 YMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDD 317

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508
           ++ VF +M+S  V+P+  AF   LSAC   G V  G R  +       ++ D      L 
Sbjct: 318 ALRVFSEMISEGVQPNEFAFSIALSAC---GSVCLG-RQIHCSAIKRDLMTDIRVSNALL 373

Query: 509 DLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL--EPSK 566
            + GR G + E   +L  +     +  L ++  A   +   G ++ A   LL++  E   
Sbjct: 374 SMYGRSGFVSELEAVLGKI----ENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFT 429

Query: 567 PVNYALVSNV 576
           P +YA  S +
Sbjct: 430 PNDYAFSSGL 439



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 95/182 (52%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           DV++    +D   K+G + DA  +FD M  KNVV+W T + G  +NG    A  +  DML
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +    P++    + L++C +        QVH+ A++ G  A   I + LI  YS+CGS+ 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  ++ PD+V +TS++ A   +G    +++V  +M    ++P+      +L+ C 
Sbjct: 189 AAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECP 248

Query: 477 HG 478
            G
Sbjct: 249 RG 250



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 12/213 (5%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  L   A    L QG+QLH   +KLG   K+   N ++++Y KC         FD M 
Sbjct: 435 FSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMD 494

Query: 126 VRNIVTWNTLISGIINCG-GNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             ++++WN+LI G+   G  N+    F  M   + R D  TF S+L  C  A  ++ G  
Sbjct: 495 THDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEG-- 552

Query: 184 LHSFILKVG--FGLNCFVS--SALVDLYGKCG-FVEDARRVFDEVLCRDLVLWNVMV-SC 237
             +F  ++   +GL    S  + ++D+ G+ G F E  R + +     D+++W  ++ SC
Sbjct: 553 -ETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASC 611

Query: 238 YALNCLGDGAIAVFNLMRL-EGMKGDYFTFSSL 269
                L  G +A   LM L E     Y   S+L
Sbjct: 612 KLHRNLDIGKLAADKLMELSERDSASYVLMSNL 644


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 289/520 (55%), Gaps = 17/520 (3%)

Query: 128  NIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            N+ +WN++I+ +   G +V         R++ L   R    +F   +++C    D+  GR
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTR---SSFPCTIKSCSALCDLVSGR 2035

Query: 183  RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
              H      GF  + FVSSAL+D+Y KCG ++DAR +FDE+  R++V W  M++ Y  N 
Sbjct: 2036 MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 2095

Query: 243  LGDGAIAVFNLMRLE--------GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
              D A+ +F     E         +  D     S++++C  +    +   +HG V+K+ F
Sbjct: 2096 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 2155

Query: 295  DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            D  + V  +L+D YAK G    + +VFD M  K+ +SWN+M+  + Q+G   EA+++   
Sbjct: 2156 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 2215

Query: 355  MLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M++      + VTL+++L +C         + +H   IK  ++  + +  ++I+ Y KCG
Sbjct: 2216 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG 2275

Query: 414  SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
             +  A + F  +KE ++ +WT+++  Y  HG +KE++++F KM+   V+P+ I F+ VL+
Sbjct: 2276 RVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLA 2335

Query: 474  ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
            ACSH GLV EG  +FN M   Y I P  EHY C+ DL GR G L EAY+L+  M ++P  
Sbjct: 2336 ACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDF 2395

Query: 534  DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
               G+ +GAC++H ++ L + AA+KL EL+P     Y L+SN+YA    W DV R+R +M
Sbjct: 2396 VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLM 2455

Query: 594  RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            ++    K PG S +E+ G +H F+  D+ HP    +Y  L
Sbjct: 2456 KNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYL 2495



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 202/396 (51%), Gaps = 36/396 (9%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N+R     F  LL+ C     +   R++H+ I++ G   +  ++  L+ LY   G +  A
Sbjct: 24  NIRAKKALF--LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYA 78

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F ++       WN+++    +N L + A+ ++  M  +G+  D FTF  ++ +C   
Sbjct: 79  ILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF 138

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG------------------------ 312
            S  LG+ +HG +IK  F  DV V  +L+D Y K G                        
Sbjct: 139 LSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVI 198

Query: 313 -------NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
                  ++ +A R+FD + +KNVVSW  M+ G+ +N    EA++L + M   +  P+E 
Sbjct: 199 SGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEY 258

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+ S++ +C  + I    R +H YAIKN ++  + +  ALI+ YSKCGSI  A++ F ++
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
               L TW S+I +   HGL +E++ +F +M    V+PD+I F+ VL AC H   V EG 
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            YF  M   Y I P  EHY C+T+L  R   L EA+
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 170/349 (48%), Gaps = 44/349 (12%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--II 140
           +Q+H+ I++ GL N   L  +++H+Y           LF +++     TWN +I    I 
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                    ++ M+   +  D  TF  +++AC     I++G+ +H  ++K GF  + FV 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 201 SALVDLYGKCGF-------------------------------VEDARRVFDEVLCRDLV 229
           + L+D Y KCG                                +++ARR+FDE+  +++V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  M++ Y  N   + A+ +F  M+ E +  + +T  SL+ +C  +G   LGR IH   
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           IK   ++ V + T+L+DMY+K G+I DA  VF+ M  K++ +WN+M+   G +G G+EA+
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            L  +M + +  PD +T   +L +C           VH   +K G   F
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCAC-----------VHIKNVKEGCAYF 381



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 145/291 (49%), Gaps = 48/291 (16%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           +K    F  +  GK +H  ++K G    + +QN ++  Y KC       K+F++MRVRN+
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191

Query: 130 VTWNTLISGIINCG--------------GNVTPY-------------------FRRMLLD 156
           V+W T+ISG+I+CG               NV  +                   F+RM  +
Sbjct: 192 VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N+  +  T  SL++AC +   + +GR +H + +K    +  ++ +AL+D+Y KCG ++DA
Sbjct: 252 NIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDA 311

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF+ +  + L  WN M++   ++ LG  A+ +F+ M    +K D  TF  ++ +C  +
Sbjct: 312 IEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHI 371

Query: 277 GSSKLG-------RQIHGLV-IKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
            + K G        Q +G+  I + ++        + ++YA++ N+D+A +
Sbjct: 372 KNVKEGCAYFTRMTQHYGIAPIPEHYE-------CMTELYARSNNLDEAFK 415


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 324/598 (54%), Gaps = 15/598 (2%)

Query: 42  RSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ 101
           + ++  Q+ +  +     H +   +   LK  AK   L+   +LHSHI+  G    + +Q
Sbjct: 7   KHLIFKQIPSLSSHTSGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQ 66

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG-NVTPYF---RRMLLDN 157
             ++ VY KC  F     +FD+M ++++V+WN++IS   +C   ++   F   ++M L  
Sbjct: 67  TALVDVYSKCCCFHSARLVFDQMPIKSLVSWNSIISA--HCRDFHIDQSFGILKQMQLLG 124

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           + L   TF   L +C     +  G  +H +I K+G  L+  ++++++ +Y +   ++ A 
Sbjct: 125 LELSSATFTGFLASC----SLPQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGAL 180

Query: 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGA--IAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
            VF  +  + +V W +++  Y     GD A   AVFN MR + +  D   F +L++ C  
Sbjct: 181 SVFYTLHQKSIVSWTIILGGYL--SAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKL 238

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
            G+  L   +H L++K  FD    +   LV MYAK  ++  A RVFD +  K+V  W +M
Sbjct: 239 SGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSM 298

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ Q G   EA+ L   +L+ +  P+E+TLA++LS+C  +       ++  Y + NG+
Sbjct: 299 ISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGL 358

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + L ++ +LI+ + KCGSI  A   F  +   DL  W+++I  YA HG+ KE++ +F K
Sbjct: 359 GSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHK 418

Query: 456 MLSH-AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           M +   ++PD+I +  VL ACSH GL+ +GL+YF  M  D+ I P  +HY+CL DLLGR 
Sbjct: 419 MQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRA 478

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G +  A   +  MP+  ++     F+ AC  H ++ L ++AA+ L +LEP    N+ L++
Sbjct: 479 GYVELALRTIQEMPVLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMT 538

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           N+Y S   W + A+ R ++      K PG S IEI G +H   +  +SH +++ ++ +
Sbjct: 539 NLYTSMGKWKEAAKARSIINARGLVKEPGWSQIEIDGAVHVLAAEGQSHLESIDIHEL 596


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/510 (33%), Positives = 286/510 (56%), Gaps = 2/510 (0%)

Query: 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
           R   +D   +D    +  L+ C +   + VG+  H   +  G   +    + L++LY KC
Sbjct: 46  RLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKC 105

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
           G  + AR VFD +  R +V WN M++ Y  +     A+ +F+ M  EG     FT SS +
Sbjct: 106 GRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTI 165

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
            +C    +    +Q+H + +K + D +  V T+++D+YAK   I DAC VF+ M  + +V
Sbjct: 166 CACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLV 225

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
           +W+++  G+ QNG   EA+ L R   +      E TL++ILS+C SL++  E  Q+HA  
Sbjct: 226 TWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVI 285

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           +K G      +  +L++ Y++CG I  A   F  ++  ++V W ++I +++ H  S E++
Sbjct: 286 LKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAM 345

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
            +FEKM    + P+ + +L VLS CSH GLV +G  YF+L++SD  + P+  HY+C+ D+
Sbjct: 346 ILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDV 405

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           LGR G   EA++LL  MP EP +   G+ +G+C+ + +I LA+ AAE+L +LEP    N+
Sbjct: 406 LGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNH 465

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
            L+SNVYA+   W +V   RK ++D+   K  G SWIE  G++H FV  +R HP+   +Y
Sbjct: 466 VLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIY 525

Query: 631 AMLCTVFGLMEE--NNVSGHCNVLDKEMDE 658
             L  ++  M +     S  C++ D   ++
Sbjct: 526 NKLEEIYHEMRKFARRTSIECDLHDVHAEQ 555



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 197/380 (51%), Gaps = 4/380 (1%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S  SQ L++ AK   L  GK  H   +  GL       N ++++Y KC   D    +FD 
Sbjct: 58  SAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDI 117

Query: 124 MRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG 181
           M VR+IV+WNT+I+G  + G +V     F RM  +   +   T +S + AC     I   
Sbjct: 118 MHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINEC 177

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           ++LH+  LK+    N FV +A++D+Y KC  ++DA  VF+++  R LV W+ + + Y  N
Sbjct: 178 KQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQN 237

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
            L + A+ +F   + EG++   FT S+++++C +L     G Q+H +++K  F  +  VA
Sbjct: 238 GLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVA 297

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            SLVD+YA+ G I+ A  +F  M  KNVV WN M+  F ++    EA+ L   M Q    
Sbjct: 298 ASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIF 357

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGALQ 420
           P+EVT  S+LS C    +  + R   +  + +  V+  +   + +++   + G    A +
Sbjct: 358 PNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWE 417

Query: 421 CFGSVK-EPDLVTWTSIIGA 439
               +  EP    W S++G+
Sbjct: 418 LLNKMPFEPTASMWGSLLGS 437



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 154/286 (53%), Gaps = 8/286 (2%)

Query: 57  ESTH-SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           E TH S  +  S     +AK+  + + KQLH+  +KL L +   +   +L VY KC    
Sbjct: 152 EGTHMSEFTLSSTICACAAKYA-INECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIK 210

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D   +F++M  R +VTW++L +G +  G        FR    + V L   T +++L AC 
Sbjct: 211 DACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACA 270

Query: 174 Q-ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             A  IE G +LH+ ILK GF  N FV+++LVD+Y +CG +E A  +F  +  +++V+WN
Sbjct: 271 SLALKIE-GIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWN 329

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK- 291
            M++ ++ +     A+ +F  M+  G+  +  T+ S+++ C   G  + GR    L++  
Sbjct: 330 AMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSD 389

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMV 336
           ++ + +VL  + +VD+  ++G  D+A  + + M  +   S W +++
Sbjct: 390 RTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLL 435


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/557 (33%), Positives = 304/557 (54%), Gaps = 7/557 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           + +H+H++K    + + +    + ++VKC + D   K+F+ M  R+  TWN ++SG    
Sbjct: 72  EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131

Query: 143 GGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G     +  FR M L+ +  D +T  +L+++      +++   +H+  +++G  +   V+
Sbjct: 132 GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 191

Query: 201 SALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           +  +  YGKCG ++ A+ VF+ +    R +V WN M   Y++      A  ++ LM  E 
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 251

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
            K D  TF +L  SC    +   GR IH   I    D D+    + + MY+K+ +   A 
Sbjct: 252 FKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSAR 311

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +FD MT++  VSW  M+ G+ + GD  EA+ L   M++    PD VTL S++S CG   
Sbjct: 312 LLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFG 371

Query: 379 ISCET-RQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
            S ET + + A A   G +   + I NALI+ YSKCGSI  A   F +  E  +VTWT++
Sbjct: 372 -SLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTM 430

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA +G+  E++++F KM+    +P+ I FL VL AC+H G + +G  YF++M   Y+
Sbjct: 431 IAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYN 490

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  +HY+C+ DLLGR G L EA +L+ +M  +P +   GA + ACK+H ++ +A+ AA
Sbjct: 491 ISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAA 550

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           E L  LEP     Y  ++N+YA+   W   AR+R +M+     K PG S I++ G+ H+F
Sbjct: 551 ESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSF 610

Query: 617 VSSDRSHPQAVHMYAML 633
              +  H +   +Y  L
Sbjct: 611 TVGEHGHVENEVIYFTL 627



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 194/415 (46%), Gaps = 6/415 (1%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQAD 176
           +L+    + ++  WN  I   +N    V     FR M       ++ TF  + +AC +  
Sbjct: 7   RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D+     +H+ ++K  F  + FV +A VD++ KC  V+ A +VF+ +  RD   WN M+S
Sbjct: 67  DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
            +  +   D A ++F  MRL  +  D  T  +L+ S     S KL   +H + I+   D+
Sbjct: 127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 186

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            V VA + +  Y K G++D A  VF+ +    + VVSWN+M   +   G+  +A  L   
Sbjct: 187 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCL 246

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           ML+  F PD  T  ++ +SC +     + R +H++AI  G    +   N  I+ YSK   
Sbjct: 247 MLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSED 306

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
              A   F  +     V+WT +I  YA  G   E++ +F  M+    +PD +  L ++S 
Sbjct: 307 TCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISG 366

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLLASMP 528
           C   G +  G ++ +     Y    D+      L D+  + G + EA D+  + P
Sbjct: 367 CGKFGSLETG-KWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP 420



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 6/254 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG+ +HSH + LG    +   N  + +Y K +       LFD M  R  V+W  +ISG
Sbjct: 272 LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 331

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL- 195
               G        F  M+    + D +T  SL+  C +   +E G+ + +     G    
Sbjct: 332 YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRD 391

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           N  + +AL+D+Y KCG + +AR +FD    + +V W  M++ YALN +   A+ +F+ M 
Sbjct: 392 NVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMI 451

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV--ATSLVDMYAKNGN 313
               K ++ TF +++ +C   GS + G + +  ++KQ +++   +   + +VD+  + G 
Sbjct: 452 DLDYKPNHITFLAVLQACAHSGSLEKGWE-YFHIMKQVYNISPGLDHYSCMVDLLGRKGK 510

Query: 314 IDDACRVFDGMTAK 327
           +++A  +   M+AK
Sbjct: 511 LEEALELIRNMSAK 524


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 290/540 (53%), Gaps = 52/540 (9%)

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITF 165
           Y++     D EKLF+EM  +N+V+WNT+I G    G   +    F +M   NV    +++
Sbjct: 125 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSW 180

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           N+++    Q   IE  RRL   + +     +    +A++    K G +++AR +FD +  
Sbjct: 181 NTVMSMLAQCGRIEEARRLFDRMPE----RDVISWTAMIAGLSKNGRIDEARLLFDRMPE 236

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
           R++V WN M++ YA N   D A+ +F  M     + D  +++++               I
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERMP----ERDLPSWNTM---------------I 277

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
            GL+                    +NG++  A ++F+ M  KNV+SW TM+ G  Q G+ 
Sbjct: 278 TGLI--------------------QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGES 317

Query: 346 REAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            EA+K+   ML  +   P++ T  S+L +C +L+   E +QVH    K   Q    + +A
Sbjct: 318 EEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSA 377

Query: 405 LINAYSKCGSIAGALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
           LIN YSKCG +  A + F  G   + DLV+W  II AYA HG  KE+I  F++M     +
Sbjct: 378 LINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFK 437

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD + ++ +LSACSH GLV EGL+YF+ ++ D  IL   +HY CL DL GR G L EA+ 
Sbjct: 438 PDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFG 497

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
            +  +  +P +   GA +  C VH ++ + K AA+KLLE+EP     Y L+SN+YAS   
Sbjct: 498 FIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGK 557

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           W + AR+R  M+D    K PGCSWIE+   +H FV  D+SH Q+  +Y++L  +   M++
Sbjct: 558 WREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKK 617



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 191/407 (46%), Gaps = 42/407 (10%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLD 161
           N ++  Y +    D    LF++M  RN+V+WNT++S +  CG       RR+       D
Sbjct: 150 NTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGR--IEEARRLFDRMPERD 207

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFI----------LKVGFGLNCFVSSALVDLYGK-- 209
            I++ +++    +   I+  R L   +          +  G+  N  +  AL DL+ +  
Sbjct: 208 VISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEAL-DLFERMP 266

Query: 210 -----------CGFVED-----ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN- 252
                       G +++     AR++F+E+  ++++ W  M++        + A+ +F+ 
Sbjct: 267 ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSR 326

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
           ++   G K +  TF S++ +C  L     G+Q+H ++ K  +     V ++L++MY+K G
Sbjct: 327 MLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG 386

Query: 313 NIDDACRVF-DGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            +  A ++F DGMT+ +++VSWN ++  +  +G G+EA+   ++M +  F PD+VT   +
Sbjct: 387 ELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGL 446

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---- 426
           LS+C    +  E  +     +K+  ++ L  E+        CG      + FG ++    
Sbjct: 447 LSACSHAGLVEEGLKYFDELVKD--RSILVREDHYACLVDLCGRAGRLKEAFGFIERLET 504

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           +P    W +++     H   K   +  +K+L   V P++     +LS
Sbjct: 505 KPSARVWGALLAGCNVHANVKIGKQAAKKLLE--VEPENAGTYLLLS 549



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 33/301 (10%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           K G + +ARR+FDE+   D++ W  ++S Y    + + A  +F+  R++  K +  T+++
Sbjct: 64  KDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD--RVDAKK-NVVTWTA 120

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
           +V   G + S+K+       +  +  + +V+   +++D YA+NG ID A  +F+ M  +N
Sbjct: 121 MVG--GYIRSNKISDAEK--LFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERN 176

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS-------C 381
           VVSWNT++    Q G   EA +L   M +         +A  LS  G +  +        
Sbjct: 177 VVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAG-LSKNGRIDEARLLFDRMP 235

Query: 382 ETRQVHAYAIKNGVQAFLSIE-----------------NALINAYSKCGSIAGALQCFGS 424
           E   V   A+  G    L ++                 N +I    + G +  A + F  
Sbjct: 236 ERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNE 295

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSE 483
           + + ++++WT++I      G S+E++++F +MLS +  +P+   F+ VL ACS+   + E
Sbjct: 296 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 355

Query: 484 G 484
           G
Sbjct: 356 G 356



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 20/243 (8%)

Query: 289 VIKQSFDLDVLVA--TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           + ++ F +D  VA    ++   +K+G I +A R+FD M   +V++W T++ G+ + G   
Sbjct: 41  IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 100

Query: 347 EAVKLLRDMLQGSFCPDEVTLASILSS-CGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
           EA +L  D +      + VT  +++     S  IS   +  +    KN V       N +
Sbjct: 101 EARRLF-DRVDAK--KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSW-----NTM 152

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           I+ Y++ G I  A+  F  + E ++V+W +++   A  G  +E+  +F++M       D 
Sbjct: 153 IDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPER----DV 208

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           I++  +++  S  G + E    F+ M  + +++  +   T     L     L EA DL  
Sbjct: 209 ISWTAMIAGLSKNGRIDEARLLFDRM-PERNVVSWNAMITGYAQNL----RLDEALDLFE 263

Query: 526 SMP 528
            MP
Sbjct: 264 RMP 266



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 14/207 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE--MRVRNIVTWNTLI 136
           L +G+Q+H  I K    +   + + ++++Y KC       K+FD+     R++V+WN +I
Sbjct: 353 LGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGII 412

Query: 137 SGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
           +   +   G     +F+ M     + D +T+  LL AC  A  +E G +    ++K    
Sbjct: 413 AAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVK---D 469

Query: 195 LNCFVS----SALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS-CYALNCLGDGAI 248
            +  V     + LVDL G+ G +++A    + +  +    +W  +++ C     +  G  
Sbjct: 470 RSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQ 529

Query: 249 AVFNLMRLEGMK-GDYFTFSSLVNSCG 274
           A   L+ +E    G Y   S++  S G
Sbjct: 530 AAKKLLEVEPENAGTYLLLSNIYASTG 556


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 247/408 (60%)

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
           R+VF+ +  RD+V WN ++S  A N + + A+ +   M    ++ D FT SS++      
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
            +   G++IHG  I+  +D DV + +SL+DMYAK   +DD+CRVF  +   + +SWN+++
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G  QNG   E +K  + ML     P+ V+ +SI+ +C  L+     +Q+H Y I++   
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
             + I +AL++ Y+KCG+I  A   F  ++  D+V+WT++I  YA HG + ++I +F++M
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
               V+P+ +AF+ VL+ACSH GLV E  +YFN M  DY I+P  EHY  + DLLGRVG 
Sbjct: 390 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 449

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           L EAY+ ++ M IEP        + AC+VH +I LA+  ++KL  ++P     Y L+SN+
Sbjct: 450 LEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 509

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
           Y++   W D  +LR  MRD    K P CSWIEI  ++H FV+ D+SHP
Sbjct: 510 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 557



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 194/367 (52%), Gaps = 18/367 (4%)

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQ 174
           + K+F+ M  R+IV+WNT+ISG    G   +     R M   ++R D  T +S+L    +
Sbjct: 149 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 208

Query: 175 ADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVM 234
             ++  G+ +H + ++ G+  + F+ S+L+D+Y KC  V+D+ RVF  +   D + WN +
Sbjct: 209 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 268

Query: 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
           ++    N + D  +  F  M +  +K ++ +FSS++ +C  L +  LG+Q+HG +I+  F
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
           D +V +A++LVDMYAK GNI  A  +FD M   ++VSW  M++G+  +G   +A+ L + 
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 355 MLQGSFCPDEVTLASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAY 409
           M      P+ V   ++L++C    +  E  +        Y I  G++ + ++ + L    
Sbjct: 389 MEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL---- 444

Query: 410 SKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH--AVRPDSI 466
            + G +  A +    +  EP    W++++ A   H    ++IE+ EK+      V P +I
Sbjct: 445 GRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH----KNIELAEKVSKKLFTVDPQNI 500

Query: 467 AFLEVLS 473
               +LS
Sbjct: 501 GAYVLLS 507



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 128/213 (60%), Gaps = 2/213 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L + A++  L +GK++H + ++ G    + + + ++ +Y KC   DD  ++F  +  
Sbjct: 200 SSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 259

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            + ++WN++I+G +  G       +F++ML+  ++ +H++F+S++ AC     + +G++L
Sbjct: 260 HDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQL 319

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H +I++  F  N F++SALVD+Y KCG +  AR +FD++   D+V W  M+  YAL+   
Sbjct: 320 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA 379

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
             AI++F  M +EG+K +Y  F +++ +C   G
Sbjct: 380 YDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 412



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 161/334 (48%), Gaps = 34/334 (10%)

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ML      DH  F S+L++C    D+  G  +H  I+++G G + +  +AL+++Y K   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 213 VEDA--RRVFDEVLCRDLVLWNVMVSC---YALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
           +E+   +R  D  +   +     +  C   + L C  D  +A  +        GD    S
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGID------QNGDLNQMS 114

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN----IDDACRVFDG 323
           +++    T               K+ FD          D+Y+K       +    +VF+ 
Sbjct: 115 NILYQVNTY--------------KKVFD-----EGKTSDVYSKKEKESYYLGSLRKVFEM 155

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
           M  +++VSWNT++ G  QNG   +A+ ++R+M      PD  TL+S+L          + 
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 215

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           +++H YAI+NG  A + I ++LI+ Y+KC  +  + + F  + + D ++W SII     +
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           G+  E ++ F++ML   ++P+ ++F  ++ AC+H
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAH 309



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  +S  +   A    L  GKQLH +I++      + + + ++ +Y KC        +FD
Sbjct: 297 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFD 356

Query: 123 EMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-E 179
           +M + ++V+W  +I G    G   +    F+RM ++ V+ +++ F ++L AC  A  + E
Sbjct: 357 KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDE 416

Query: 180 VGRRLHSFI--LKVGFGLNCFVSSALVDLYGKCGFVEDA 216
             +  +S     ++  GL  +  +A+ DL G+ G +E+A
Sbjct: 417 AWKYFNSMTQDYRIIPGLEHY--AAVADLLGRVGRLEEA 453


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/516 (32%), Positives = 291/516 (56%), Gaps = 33/516 (6%)

Query: 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
           F  M  +NVR+   T   + ++C     I+VG+++HS +++ GF  + F  +AL++ Y K
Sbjct: 84  FVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAK 143

Query: 210 -------------------------------CGFVEDARRVFDEVLCRDLVLWNVMVSCY 238
                                           G V  AR +FD++  R +V WN M+SCY
Sbjct: 144 INDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCY 203

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N        +F  M+ E  + +  T +++++ C  LG  ++G +I  L   ++   ++
Sbjct: 204 AQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNM 263

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
           +V+T++++MY K G +DD   VFD M  ++VV+W+ M+ G+ QNG   EA++L  +M   
Sbjct: 264 IVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSA 323

Query: 359 SFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P++VTL S+LS+C  L  S ET  ++ +Y    G+ + + + +AL+  YSKCG+I  
Sbjct: 324 QIKPNDVTLVSVLSACAQLG-SVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIK 382

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
           A Q F  + + D VTW S+I   A +G ++++I ++ +M    V+P++I F+ +++AC+H
Sbjct: 383 ARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTH 442

Query: 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537
            G V  GL +F  M SD++I P+ EH+ C+ DL  R G L++AY+ +  M +EP     G
Sbjct: 443 AGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWG 502

Query: 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597
             + A ++H ++ LA+ A +KLLELEP    NY ++SN+YAS   W +  ++RK+M+D  
Sbjct: 503 TLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKR 562

Query: 598 DHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
             K    SW+E+   +H F+  D SHP++  +Y+ +
Sbjct: 563 VQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTI 598



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 222/457 (48%), Gaps = 60/457 (13%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME----------------------- 118
           GKQ+HS +++ G  + +  QN +++ Y K       E                       
Sbjct: 115 GKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSR 174

Query: 119 --------KLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSL 168
                   +LFD+MR R+IV+WN +IS     G     +  F+RM  +    + IT  ++
Sbjct: 175 SGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATV 234

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L  C +  D+E+G R+         G N  VS+A++++Y KCG V+D R VFD +  RD+
Sbjct: 235 LSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDV 294

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V W+ M++ YA N   + A+ +F  M+   +K +  T  S++++C  LGS + G +I   
Sbjct: 295 VTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSY 354

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           V  +    +V VA++L+ MY+K GNI  A ++FD +  ++ V+WN+M++G   NG   +A
Sbjct: 355 VESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDA 414

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN----- 403
           + L   M +    P+ +T   ++++C            HA  ++ G++ F S+ +     
Sbjct: 415 IALYNRMKEIEVKPNNITFVGLMTAC-----------THAGHVELGLEFFRSMRSDHNIS 463

Query: 404 -------ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
                   +++ + + G +  A +    ++ EP++V W +++ A   H L+ E  E+  K
Sbjct: 464 PNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIH-LNVELAELAGK 522

Query: 456 MLSHAVRPDSIAFLEVLSAC-SHGGLVSEGLRYFNLM 491
            L   + PD+     +LS   +  G   E L+   LM
Sbjct: 523 KLLE-LEPDNSGNYVILSNIYASAGRWQEALKVRKLM 558



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 183/394 (46%), Gaps = 36/394 (9%)

Query: 212 FVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
           F++ AR+VFD++   D  +    ++ Y+   L + A+  F  M    ++   FT   +  
Sbjct: 45  FIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFK 104

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN--- 328
           SC +L +  +G+Q+H LVI+  F   V    +L++ YAK  ++  A  +FDG+  K+   
Sbjct: 105 SCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIA 164

Query: 329 ----------------------------VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
                                       +VSWN M+  + QNGD  +   + + M Q   
Sbjct: 165 YNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRM-QDEM 223

Query: 361 C-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
           C P+E+TLA++LS C  L       ++        + + + +  A++  Y KCG++    
Sbjct: 224 CEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGR 283

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  +   D+VTW+++I  YA +G S E++E+FE M S  ++P+ +  + VLSAC+  G
Sbjct: 284 LVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLG 343

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
            V  G R     +    ++ +    + L  +  + G +++A  +   +P +  + T  + 
Sbjct: 344 SVETGER-IGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNSM 401

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
           I    ++G    A     ++ E+E  KP N   V
Sbjct: 402 IMGLAINGFAEDAIALYNRMKEIE-VKPNNITFV 434



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 4/274 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L + AK G L+ G ++        L + + +   +L +YVKC A DD   +FD M  
Sbjct: 232 ATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMAR 291

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R++VTW+ +I+G    G        F  M    ++ + +T  S+L AC Q   +E G R+
Sbjct: 292 RDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERI 351

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
            S++   G   N +V+SAL+ +Y KCG +  AR++FD++  RD V WN M+   A+N   
Sbjct: 352 GSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFA 411

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATS 303
           + AIA++N M+   +K +  TF  L+ +C   G  +LG +    +    +   ++     
Sbjct: 412 EDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFAC 471

Query: 304 LVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           +VD++ ++G + DA      M  + NVV W T++
Sbjct: 472 IVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLL 505


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 286/529 (54%), Gaps = 4/529 (0%)

Query: 132 WNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFIL 189
           WN L+S     G  G     FR  L  + R +  TF   L AC +  D++    +     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFR-ALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIA 249
             G+G + FV SAL+ LY +CG +E+A RVFD +  +D V W+ MV+ +        A+A
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 250 VFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +++ MR  G+  D      ++ +C + G++++G  +HG +++    +DV+  TSLV MYA
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYA 254

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           KNG++D AC+VF  M  +N V+W+ ++ GF QNG   EA+ L R++      P    L S
Sbjct: 255 KNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVS 314

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
            L +C S+      + +H + ++  ++    +  A+++ YSKCGS+  A + F  +   D
Sbjct: 315 ALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRD 373

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           LV W +II     HG   +++ +F+++    ++PD   F  +LSA SH GLV EG  +F+
Sbjct: 374 LVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFD 433

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            MI ++ I P  +HY C+ DLL R GL+ EA D+LASM  EP        +  C  +  +
Sbjct: 434 RMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKL 493

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            L +  A+K+LEL P      ALVSN+YA+ + W  V  +RK+M+D+   KVPG S IE+
Sbjct: 494 ELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEV 553

Query: 610 AGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
            G  H FV  D+SHPQ   +  M+  +   M +         +  ++DE
Sbjct: 554 KGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDE 602



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 223/437 (51%), Gaps = 19/437 (4%)

Query: 47  SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLH 106
           + LR    +  S     + ++  L   A+ G L   + +       G  + + + + +LH
Sbjct: 91  AALRVFRALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLH 150

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVT--PYFRRMLLDNVRLDHIT 164
           +Y +C A ++  ++FD M  ++ V W+T+++G +  G  V     + RM    V  D + 
Sbjct: 151 LYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVV 210

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
              +++AC+   +  +G  +H  +L+    ++   +++LV +Y K G ++ A +VF  + 
Sbjct: 211 MVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMP 270

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R+ V W+ ++S +A N     A+ +F  ++ +G++   +   S + +C ++G  KLG+ 
Sbjct: 271 YRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKS 330

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHG ++++  +   ++ T+++DMY+K G+++ A ++F+ ++++++V WN ++   G +G 
Sbjct: 331 IHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGC 389

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGVQAFL 399
           G +A+ L +++ +    PD  T AS+LS+     +  E      R +  + I+   + ++
Sbjct: 390 GHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYV 449

Query: 400 SIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            I    ++  ++ G +  A     S++ EP +  W  ++       L+ + +E+ E +  
Sbjct: 450 CI----VDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGC----LNNKKLELGETIAK 501

Query: 459 H--AVRPDSIAFLEVLS 473
               +RP+ I  L ++S
Sbjct: 502 KILELRPEDIGVLALVS 518


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 310/587 (52%), Gaps = 12/587 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           ++ G L+ G+ +H ++++  + +  SL N ++ +Y K       E+LF+ +  R    W 
Sbjct: 212 SELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWT 271

Query: 134 TLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
            +IS      C       F +M    +  + +T   +L AC +   ++ GR +H F+++ 
Sbjct: 272 PMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRR 331

Query: 192 GFGLNC-FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
                  F+  AL++LY   G + D  +VF+ +  + ++ WN ++S +  N   + A+ +
Sbjct: 332 AMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLL 391

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F  M+ +G+  D ++ +S +++CGT+  S+LG QIHG +IK   + +  V  +L+DMYAK
Sbjct: 392 FVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAK 450

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G +  A ++F+ +  K++V+WN+M+ GF QNG   EA+ L   M       D++T  S+
Sbjct: 451 CGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 510

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           + +C  L    + + VH   I  G++    ++ AL + YSKCG +  A   F  + E  +
Sbjct: 511 IQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 570

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+W+ +I  Y  HG    +I +F +ML   ++P+ I F+ +LSACSH G V EG  YFN 
Sbjct: 571 VSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNS 630

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M S++ + P  +H+ C+ DLL R G L  AY ++ S+P    S   GA +  C++H  I 
Sbjct: 631 M-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRID 689

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIA 610
           + K   + LL+++ +    Y L+SN+YA E  W    ++R MM+     KVPG S IEI 
Sbjct: 690 IIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 749

Query: 611 GEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMD 657
            +I+ F   D SH Q   +Y  L     L+       H  V D E D
Sbjct: 750 KKIYRFGPGDTSHSQTKDIYRFLENFRSLV-------HAQVYDSEPD 789



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/498 (31%), Positives = 268/498 (53%), Gaps = 8/498 (1%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
            + T  ++  +   LK  + FG L  G ++H  ++K G  +   ++  +L +Y +    D
Sbjct: 93  QDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLD 152

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
           D  K FD M +R++V W++++   +  G        F +M+ + V  D +T  S+  AC 
Sbjct: 153 DACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACS 212

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           +   + +GR +H ++++     N  ++++L+ +YGK G +  A R+F+ V CR    W  
Sbjct: 213 ELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTP 272

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           M+SCY  +     A+ VF  M+   M+ +  T   ++ +C  LG  K GR +HG VI+++
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332

Query: 294 FDLDV-LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            D ++  +  +L+++YA  GN+ D  +VF+ +  K ++SWNT++  F +NG   EA+ L 
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG-VQAFLSIENALINAYSK 411
             M      PD  +LAS LS+CG++S S    Q+H Y IK G    F  ++NALI+ Y+K
Sbjct: 393 VQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF--VQNALIDMYAK 450

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
           CG +  A + F  +KE  LVTW S+I  ++ +G S E+I +F++M  + V+ D + FL V
Sbjct: 451 CGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 510

Query: 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531
           + ACSH G + +G ++ +  +  Y +  DS   T LTD+  + G L  A+ +   M  E 
Sbjct: 511 IQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ER 568

Query: 532 RSDTLGAFIGACKVHGSI 549
              +    I    +HG I
Sbjct: 569 SIVSWSVMIAGYGMHGQI 586



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 211/417 (50%), Gaps = 17/417 (4%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143
           QLH+H+   GL        +++  Y +   F+  +++FD     +   W  LI   +  G
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 144 ---GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                V+ Y   +  D  ++ +  F S+L+AC    D+ VG ++H  ++K GF  +  V 
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           ++L+ +YG+   ++DA + FD +  RD+V W+ +V  +  N      + +F+ M  E ++
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVE 198

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D  T  S+  +C  LGS +LGR +HG V+++  + +  +  SL+ MY K G++  A R+
Sbjct: 199 PDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL 258

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           F+ +  +    W  M+  + Q+G  +EA+ +   M +    P++VT+  +L +C  L   
Sbjct: 259 FENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRV 318

Query: 381 CETRQVHAYAIKNGVQAFLS-IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
            E R VH + I+  +   L  +  AL+  Y+  G++    + F ++KE  +++W ++I  
Sbjct: 319 KEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISI 378

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPD------------SIAFLEVLSACSHGGLVSEG 484
           +  +G  +E++ +F +M +  + PD            +I+F + L A  HG ++  G
Sbjct: 379 FTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQ-LGAQIHGYIIKTG 434



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 167/323 (51%), Gaps = 4/323 (1%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222
           I +  L R C  +  +    +LH+ +   G   +   S+ L++ Y + G  E ++RVFD 
Sbjct: 2   ILYMPLFRRCATSTTLT---QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT 58

Query: 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKL 281
               D  +W V++ CY      + A+++++ M  +       F F S++ +C   G   +
Sbjct: 59  FPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSV 118

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G ++HG VIK  F+ D +V TSL+ MY +   +DDAC+ FD M  ++VV+W+++V+ F Q
Sbjct: 119 GGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQ 178

Query: 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401
           NG   E + +   M+  +  PD VT+ S+  +C  L      R VH Y ++  +++  S+
Sbjct: 179 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASL 238

Query: 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
            N+LI  Y K G +  A + F +V       WT +I  Y   G  +E++ VF KM    +
Sbjct: 239 NNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKM 298

Query: 462 RPDSIAFLEVLSACSHGGLVSEG 484
            P+ +  + VL AC+  G V EG
Sbjct: 299 EPNQVTMVGVLCACARLGRVKEG 321


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 308/572 (53%), Gaps = 11/572 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L+   + G L++G+ LH+ ++  G     + L N ++ +Y  C       +LF  M  RN
Sbjct: 27  LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 86

Query: 129 IVTWNTLISGIIN-----CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            V+W TL+SG+                RR  +   R    +      A         G +
Sbjct: 87  AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP---LPGAQ 143

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH   +++GF    FV+S L D+Y KCG + +A RVFD++  +D V W  M+  YA N  
Sbjct: 144 LHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 203

Query: 244 GDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            + A+  F  M+ EG+ G D   F S++++ G L    L + IH  V K  F+L+V V  
Sbjct: 204 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRN 263

Query: 303 SLVDMYAKNGNIDDACRVFD-GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
           +L+DMYAK+ +++ A RV        NVVS  +M+ G+ +     EA+ +  ++ +    
Sbjct: 264 ALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE 323

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           P+E T +S++  C   ++  +  Q+HA  IK  +     + + L++ Y KCG I+ ++Q 
Sbjct: 324 PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQL 383

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  ++    + W ++I  +A HG  +E+I+ F++M+   +RP+ IAF+ +L+ACSH GLV
Sbjct: 384 FNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLV 443

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EGL+YF  M   + I P  EHY+C+ D  GR G L EAY  ++ MPI+P +    + +G
Sbjct: 444 DEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLG 503

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC++ GS  L + AA+ L++LEP     +  +S +YAS   W DV  +RK+MRD+   K+
Sbjct: 504 ACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKL 563

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           PG SW++   + H F S D SHPQ   +Y  L
Sbjct: 564 PGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKL 595



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 209/418 (50%), Gaps = 12/418 (2%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHS-FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           +   SLL++C +A D+  GR LH+  +L      + F+++ L+ +Y  C  +  A R+F 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  R+ V W  +VS  + N +   A+A F  MR  G+    F  SS   +   LG+   
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLP 140

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
           G Q+H + ++  FD ++ VA++L DMY+K G + +ACRVFD M  K+ V+W  M+ G+ +
Sbjct: 141 GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 200

Query: 342 NGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           NG    AV   RDM  +G    D+    S+LS+ G L     ++ +H    K G +  ++
Sbjct: 201 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 260

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEP---DLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           + NALI+ Y+K   +  A +      +P   ++V+ TS+I  Y      +E++ ++ ++ 
Sbjct: 261 VRNALIDMYAKSMDVESASRVLKI--DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELR 318

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              V P+   F  ++  C+   L+ +G +    +I    ++ DS   + L D+ G+ GL+
Sbjct: 319 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT-DLIRDSFVGSTLVDMYGKCGLI 377

Query: 518 VEAYDLLASMPIEPRSD-TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
             +  L     IE R+D    A I     HG    A  A ++++     +P + A VS
Sbjct: 378 SLSMQLFNE--IEYRTDIAWNAVINVFAQHGHGREAIQAFDRMI-YSGIRPNHIAFVS 432



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +K  A    L+QG QLH+ ++K  L     + + ++ +Y KC       +LF+E+ 
Sbjct: 329 FSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIE 388

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R  + WN +I+       G      F RM+   +R +HI F SLL AC  A  ++ G +
Sbjct: 389 YRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLK 448

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLW-NVMVSCYA 239
            + + +K   G+       S ++D YG+ G +++A +   E+  + +   W +++ +C  
Sbjct: 449 -YFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 507

Query: 240 LNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
                 G +A  NLM+LE G  G + + S +  S G     K  R++
Sbjct: 508 RGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKL 554



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 362 PDEVT---LASILSSCGSLSISCETRQVHAYAIKNGVQAFLS-IENALINAYSKCGSIAG 417
           PD  T   LAS+L SCG        R +HA  + +G  A  + + N LI  YS C  +A 
Sbjct: 15  PDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLAS 74

Query: 418 ALQCFGSVKEPDLVTWTSII 437
           AL+ F ++   + V+WT+++
Sbjct: 75  ALRLFAAMPRRNAVSWTTLV 94


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 323/574 (56%), Gaps = 17/574 (2%)

Query: 80  QQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++G ++H+ +++ GL N ++++ N ++++Y KC A +D   +F  M  ++ VTWN++I+G
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITG 464

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           +            F+ M    +   + T  S L +C     I VG +LH   LK+G  L+
Sbjct: 465 LDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLD 524

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG------AIAV 250
             VS+AL+ LYG+CG+V++ ++ F  +L  D V WN ++       L D       A+  
Sbjct: 525 VSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGA-----LADSEPSMLEAVES 579

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F +M   G   +  TF +++ +  +L   +LG+QIH LV+K++   D  +  +L+  Y K
Sbjct: 580 FLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGK 639

Query: 311 NGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
            G++     +F  M+ + + VSWN+M+ G+  N    +A+ ++  M+Q     D  T A+
Sbjct: 640 CGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFAT 699

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +LS+C +++      +VH  +++  +++ + I +AL++ Y+KCG I  A + F  +   +
Sbjct: 700 VLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARN 759

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           L +W S+I  YA HG   +S+++F +M      PD + F+ VLSACSH GLV+EG  +F+
Sbjct: 760 LYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFD 819

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA-CKVHG- 547
            M   Y + P  EH++C+ DLLGRVG L +  D L  MP++P        +GA C+ +G 
Sbjct: 820 SMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGR 879

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +  L + AAE LLE+EP+  VNY L+SN+YAS   W DVA+ R  MR     K  GCSW+
Sbjct: 880 NTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWV 939

Query: 608 EIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
            +   +H FV+ D+SHP+   +Y  L  + G M 
Sbjct: 940 TMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMR 973



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 223/424 (52%), Gaps = 23/424 (5%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           +  ++LH  + K G  N L L N ++++Y +        K+FDEM +RN+V+W+ LISG 
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 140 INCGGNVTP-----YFRRMLLDNVRLDHITFNSLLRACVQADD--IEVGRRLHSFILKVG 192
                N  P      FR+M+ D    +H  F S++RAC +  +  ++ G ++H  + K  
Sbjct: 150 TR---NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQ 206

Query: 193 FGLNCFVSSALVDLYGKC-GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           +  +   S+ L+ +YG   G V+ ARR FD +  R+LV  N M+S Y        A  +F
Sbjct: 207 YVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIF 266

Query: 252 NLMRLE----GMKGDYFTFSSLVNSCGTLGSSKLG--RQIHGLVIKQSFDLDVLVATSLV 305
           + M+ E    G+K + +TF SL+++  +L +S L    Q+   V K  F  D+ V ++LV
Sbjct: 267 STMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALV 326

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
             +AK G+I  A  +F  M+ +NVVS N +++G  +   G EAV+L  +M + S   +  
Sbjct: 327 SGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPN 385

Query: 366 TLASILSSCGSLSI----SCETRQVHAYAIKNG-VQAFLSIENALINAYSKCGSIAGALQ 420
           +   IL++     +      +  +VHA+ I++G + A ++I N LIN Y+KCG+I  A  
Sbjct: 386 SYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACV 445

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +   D VTW S+I     +    E+++ F++M    + P +   +  LS+C+  G 
Sbjct: 446 VFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGW 505

Query: 481 VSEG 484
           +S G
Sbjct: 506 ISVG 509



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 201/389 (51%), Gaps = 30/389 (7%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   A  G++  G+QLH   +KLGL   +S+ N +L +Y +C    + +K F  M   +
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYD 555

Query: 129 IVTWNTLISGIINCGGNV---TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            V+WN+LI  + +   ++      F  M+      + +TF ++L A       E+G+++H
Sbjct: 556 HVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIH 615

Query: 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALNCLG 244
           + +LK     +  + +AL+  YGKCG +     +F  +  R D V WN M+S Y  N L 
Sbjct: 616 ALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELL 675

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +   M  +G + D FTF++++++C T+ + + G ++HG  ++   + D+++ ++L
Sbjct: 676 PKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSAL 735

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPD 363
           VDMYAK G ID A R F+ M A+N+ SWN+M+ G+ ++G G +++ L   M LQG   PD
Sbjct: 736 VDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPL-PD 794

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE------------NALINAYSK 411
            VT   +LS+C            HA  +  G   F S+             + +++   +
Sbjct: 795 HVTFVGVLSACS-----------HAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGR 843

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGA 439
            G +         +  +P+++ W +++GA
Sbjct: 844 VGELNKMEDFLNQMPVKPNVLIWRTVLGA 872



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 161/315 (51%), Gaps = 10/315 (3%)

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
              LH  + K GF  + F+ + L+++Y + G +   R+VFDE+  R+LV W+ ++S Y  
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS--KLGRQIHGLVIKQSFDLDV 298
           N + + A  +F  M  +G   +++ F S++ +C   G    K G QIHGL+ K  +  DV
Sbjct: 152 NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 299 LVATSLVDMYAKN-GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL----R 353
             +  L+ MY    G +D A R FD +  +N+VS N+M+  + Q GD   A  +     +
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQK 271

Query: 354 DMLQGSFCPDEVTLASILSSCGSLSIS--CETRQVHAYAIKNGVQAFLSIENALINAYSK 411
           +++     P+E T  S++S+  SL+ S      Q+     K+G    L + +AL++ ++K
Sbjct: 272 EVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAK 331

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471
            GSI  A   F  +   ++V+   +I         +E++E+F +M   +V  +  +++ +
Sbjct: 332 AGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNSYMII 390

Query: 472 LSACSHGGLVSEGLR 486
           L+A     ++  G R
Sbjct: 391 LTAFPEFHVLENGKR 405



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 16/221 (7%)

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           SCG    SK   ++H  + K  F  D+ +  +L+++YA+ G++    +VFD M  +N+VS
Sbjct: 86  SCG----SKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVS 141

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS---CGSLSISCETRQVHA 388
           W+ ++ G+ +N    EA +L R M+   F P+     S++ +   CG   +     Q+H 
Sbjct: 142 WSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGM-QIHG 200

Query: 389 YAIKNGVQAFLSIENALINAYSKC-GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
              K      ++  N LI+ Y    G +  A + F S+   +LV+  S+I  Y   G + 
Sbjct: 201 LMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAV 260

Query: 448 ESIEVFEKM----LSHAVRPDSIAFLEVLSA-CS--HGGLV 481
            + ++F  M    +   ++P+   F  ++SA CS  + GLV
Sbjct: 261 SAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLV 301



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A    L++G ++H   ++  L + + + + ++ +Y KC   D   + F+ M 
Sbjct: 697 FATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMP 756

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
            RN+ +WN++ISG    G        F +M L     DH+TF  +L AC  A  +  G  
Sbjct: 757 ARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFS 816

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV 235
              S     G        S +VDL G+ G +       +++  + ++++W  ++
Sbjct: 817 HFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVL 870


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/591 (31%), Positives = 312/591 (52%), Gaps = 21/591 (3%)

Query: 33  TITNAQKHDRSVLSSQLRNSGTIHESTHSAHS-----------FYSQALKVSAKFGFLQQ 81
           T+ N Q     ++  Q   SG++ E+ H  +S           FY+  L+   K      
Sbjct: 21  TLENPQSKAYKII--QYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTH 78

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA-FDDMEKLFDEMRVRNIVTWNTLISGII 140
           G Q HSH +K GL     + N +L +Y K      +  ++FD +  +++++W ++I+G +
Sbjct: 79  GIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYV 138

Query: 141 NC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                      F  ML   +  +  T +++++AC    D+ +G+  H  ++  GF LN  
Sbjct: 139 KVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDV 198

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM-RLE 257
           +S+AL+D+YG+   V+DA  VF E+   D + W  ++S +  N + D A+  F  M R  
Sbjct: 199 ISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKH 258

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D FTF +++ +CG LG  K G+++H  VI      +V V +SLVDMY K   ++ +
Sbjct: 259 GLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQS 318

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             VFD M+ KN+VSW  ++ G+ QNGD    +++ R+  +     D  +  ++L +C  L
Sbjct: 319 QCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKK----VDTYSFGTVLRACAGL 374

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           +   + ++VH   +K      +  E+AL++ Y+KCG I  A + F  +   +L+TW S+I
Sbjct: 375 AAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMI 434

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             +A +G   E  ++F++M+   +RPD I+F+ VL ACSH GLV +G +YF  M   Y I
Sbjct: 435 YGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEI 494

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLLGR GLL EA +L+ +             +GAC        A+  A+
Sbjct: 495 KPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAERIAK 554

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           K +EL+P   ++Y  ++NVY +   W D  ++R +M      K+PG SWIE
Sbjct: 555 KAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWIE 605


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/570 (34%), Positives = 302/570 (52%), Gaps = 9/570 (1%)

Query: 96  NKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLL 155
           + +   N V+ +Y +C    D  K+FDE+   ++V+W   I G  + G      FR +L 
Sbjct: 7   SSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERI-GTASDGHEAVELFRIVLS 65

Query: 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
             + ++  T  ++L        +  G+++ +   K G+     VS+ALV +YGKCG + D
Sbjct: 66  LGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICD 125

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A RVF  ++ RD V WN ++S  + N   + A+ VF  MR   ++    T +S++ +   
Sbjct: 126 ACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSN 185

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
             ++K   QIH LV+K  F  DV + + L+  Y +  ++D++ RVF  +   N+V  NTM
Sbjct: 186 SNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTM 245

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +  F + G   +A+ L + +       D  T + IL +C +++     R VH+  +K G 
Sbjct: 246 ITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGF 305

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
                +E+++I+ Y KCGSI  A + F S     L  W +++  YA HG  +E  ++F K
Sbjct: 306 DQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNK 365

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M    + PD I +L VLS+C HGGLV E   Y + M   + I+P  EHY C+ DLLGRVG
Sbjct: 366 MSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVG 425

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
           LL +A   +  MPI+P        + AC +HG + L + AA KLLE+ P     Y L+SN
Sbjct: 426 LLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYILLSN 485

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCT 635
           +YAS   W  V RLRK M++    K PG SWI++  + HTF  +D SHPQ+  +YA L  
Sbjct: 486 LYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQVGRKSHTFFVNDTSHPQSKEIYAELIR 545

Query: 636 VFGLMEENNVSGHCNVLDKEMDECTLWLPG 665
           ++   ++  VS     L+ E D   LW+ G
Sbjct: 546 LY---KQVIVS-----LEPEQDGAFLWING 567



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 186/374 (49%), Gaps = 10/374 (2%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
           FL  GKQ+ +   K G    +S+ N ++ +Y KC    D  ++F  M +R+ V+WN+LIS
Sbjct: 87  FLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLIS 146

Query: 138 -----GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
                G +N    V    R + L        T  S+L A   +++ +   ++HS ++K G
Sbjct: 147 ACSENGFVNQALEVFYQMRELSLQPTIH---TLASILEAVSNSNNTKQVIQIHSLVVKCG 203

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  +  + S L+  YG+C  +++++RVF E+   +LV  N M++ +        A+A++ 
Sbjct: 204 FMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQ 263

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            +     K D  TFS ++ +C  +   +LGR +H LV+K  FD D  V +S++D+Y K G
Sbjct: 264 TIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCG 323

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +I  A + F   +  ++ +WN M++G+  +G  +E   L   M Q    PDE+T   +LS
Sbjct: 324 SIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLS 383

Query: 373 SCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDL 430
           SC    +  E R       + +G+   L     +I+   + G +  A +    +  +PD+
Sbjct: 384 SCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDV 443

Query: 431 VTWTSIIGAYAFHG 444
             W  ++ A   HG
Sbjct: 444 HIWQILLSACNIHG 457



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 153/288 (53%), Gaps = 5/288 (1%)

Query: 191 VGF--GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +GF  G +   S+A++ +Y +CG   DA +VFDE+   D+V W   +   +    G  A+
Sbjct: 1   MGFLRGSSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTAS---DGHEAV 57

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F ++   G+  + +T  ++++  G +     G+QI  L  K  +   V V+ +LV MY
Sbjct: 58  ELFRIVLSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMY 117

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
            K G I DACRVF  M  ++ VSWN+++    +NG   +A+++   M + S  P   TLA
Sbjct: 118 GKCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLA 177

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           SIL +  + + + +  Q+H+  +K G    +S+ + LI AY +C S+  + + F  + + 
Sbjct: 178 SILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKV 237

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           +LV   ++I  +   G   +++ +++ + S   + DS  F  +L ACS
Sbjct: 238 NLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACS 285



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 10/217 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  LK  +    +Q G+ +HS ++K G      +++ V+ +Y KC +    EK F    
Sbjct: 277 FSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSS 336

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           + ++  WN ++ G  +  C   V   F +M    +  D IT+  +L +C     ++  R 
Sbjct: 337 MNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARH 396

Query: 184 -LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCYALN 241
            L S     G   +    + ++DL G+ G +EDA++  D +  + D+ +W +++S  A N
Sbjct: 397 YLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLS--ACN 454

Query: 242 CLGD---GAIAVFNLMRLEGM-KGDYFTFSSLVNSCG 274
             G    G +A   L+ +    +  Y   S+L  S G
Sbjct: 455 IHGHVELGRVAARKLLEIHPENESAYILLSNLYASVG 491


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/474 (36%), Positives = 269/474 (56%), Gaps = 22/474 (4%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY--------------GKCGFVE 214
           L++C       +G  LH+  L+ G   + F ++AL++LY              G    +E
Sbjct: 65  LKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLE 124

Query: 215 DARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AIAVFNLMRLEGMKGDYFTFSSLV 270
             R+VFDE+  +D+V WN +V    L C   G    A+ +   M  +G K D FT SS++
Sbjct: 125 SVRKVFDEMPEKDVVSWNTLV----LGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVL 180

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330
                    + G ++HG   +  F  DV V +SL+DMYA     D + +VFD +  ++ +
Sbjct: 181 PIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI 240

Query: 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYA 390
            WN+M+ G  QNG   EA+ L R ML     P  VT +S++ +CG+L+     +Q+HAY 
Sbjct: 241 LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYV 300

Query: 391 IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI 450
           I+ G    + I ++LI+ Y KCG+++ A + F  ++ PD+V+WT++I  +A HG ++E++
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510
            +F++M    ++P+ I FL VL+ACSH GLV +G +YFN M   Y I+P  EH+  L D 
Sbjct: 361 VLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADT 420

Query: 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570
           LGR G L EAY+ ++ M I+P +      + ACKVH +  LA+  A+K+ +LEP    ++
Sbjct: 421 LGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSH 480

Query: 571 ALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
            ++SN Y+S   W + A LRK MR     K P CSWIE+  + H FV+ D+SHP
Sbjct: 481 IILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHP 534



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 213/423 (50%), Gaps = 20/423 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA--------------F 114
           ALK  A  G    G  LH+  ++ G        N +L++Y K  A               
Sbjct: 64  ALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVL 123

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC 172
           + + K+FDEM  +++V+WNTL+ G    G  G      R M  D  + D  T +S+L   
Sbjct: 124 ESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIF 183

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
            +  D+  G  LH F  + GF  + FV S+L+D+Y  C   + + +VFD +  RD +LWN
Sbjct: 184 AEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWN 243

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
            M++  A N   D A+ +F  M   G+K    TFSSL+ +CG L S  LG+Q+H  VI+ 
Sbjct: 244 SMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG 303

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
            FD +V +++SL+DMY K GN+  A R+FD + + ++VSW  M++G   +G  REA+ L 
Sbjct: 304 GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLF 363

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSK 411
             M  G+  P+ +T  ++L++C    +  +  +  ++ +   G+   L    AL +   +
Sbjct: 364 DRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGR 423

Query: 412 CGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
            G +  A      +K +P    W++++ A   H  +  + EV +K+    + P S+    
Sbjct: 424 PGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFD--LEPRSMGSHI 481

Query: 471 VLS 473
           +LS
Sbjct: 482 ILS 484



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 145/274 (52%), Gaps = 4/274 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L + A+   +++G +LH    + G  + + + + ++ +Y  C   D   K+FD + V
Sbjct: 177 SSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPV 236

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ + WN++++G    G        FRRML   ++   +TF+SL+ AC     + +G++L
Sbjct: 237 RDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQL 296

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H+++++ GF  N F+SS+L+D+Y KCG V  ARR+FD +   D+V W  M+  +AL+   
Sbjct: 297 HAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPA 356

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATS 303
             A+ +F+ M L  +K ++ TF +++ +C   G    G +  + +         +    +
Sbjct: 357 REALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAA 416

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMV 336
           L D   + G +++A     GM  K   S W+T++
Sbjct: 417 LADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 3/154 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +        L  GKQLH+++++ G    + + + ++ +Y KC       ++FD ++
Sbjct: 277 FSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ 336

Query: 126 VRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
             +IV+W  +I G  +          F RM L N++ +HITF ++L AC  A  ++ G +
Sbjct: 337 SPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWK 396

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
             +S     G   +    +AL D  G+ G +E+A
Sbjct: 397 YFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEA 430



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 331 SWNTMVVGFGQNGDGREAVKL---LRDMLQGSFCPDEVT-LASILSSCGSLSISCETRQV 386
           SW   +      GD   A+ L   +R     + C   +T L   L SC +L +      +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGS--------------IAGALQCFGSVKEPDLVT 432
           HA A+++G  A     NAL+N Y K  +              +    + F  + E D+V+
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           W +++   A  G   E++ +  +M     +PDS     VL   + G  V  G+
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGM 193


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 293/514 (57%), Gaps = 6/514 (1%)

Query: 155 LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214
           +D  R +  T+  LL+ C  +  +  G+R+HS ++K G+  +  +++ L+++YGKCG + 
Sbjct: 17  VDERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIA 76

Query: 215 DARRVFDEVLCR--DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           +AR VFD++  +  D++ WN ++  Y  N LG  A+ +F  M LEG+  +  T  + +++
Sbjct: 77  EARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDA 136

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C +L S + GR +H + + +  + D +V TSLV+M+ K  N+D A  VFD +  KN+V+W
Sbjct: 137 CASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTW 196

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N MV  + QN   ++A+++ R M      PD VT  +I+ +C +L+   E R VH     
Sbjct: 197 NNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITA 256

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           +G+   +++  A+++ Y KCG +  A   F S+ + + VTW++I+ AYA +G   E+IE+
Sbjct: 257 SGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIEL 316

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           + +M+   +  + I FL +L ACSH G   +G+ YF  MI D+ ++P  EHY  L DLLG
Sbjct: 317 YHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLG 376

Query: 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572
           R G L  + DL+ SMP EP S    A +GAC++HG +      AE + EL+P     Y L
Sbjct: 377 RSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYIL 436

Query: 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAM 632
           +SN+Y+S     +  R RK MR     K PG S IE+   +H F+++ + HPQ   ++A 
Sbjct: 437 LSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAE 496

Query: 633 LCTVFGLMEE----NNVSGHCNVLDKEMDECTLW 662
           +  +   ++E     +V      +++E  E  LW
Sbjct: 497 IERLKARVKEAGYVADVRAVLRDVEEEEKEQLLW 530



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/512 (27%), Positives = 242/512 (47%), Gaps = 52/512 (10%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y   LK  A    L +GK++HS ++K G  +   + N ++ +Y KC    +   +FD+
Sbjct: 25  STYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQ 84

Query: 124 MRVRN--IVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179
           ++ +N  +++WN +I        G      F+ M L+ V  + +T  + + AC      E
Sbjct: 85  IQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEE 144

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            GR +H+  +      +  V ++LV+++GKC  V+ AR VFD +  ++LV WN MV+ Y+
Sbjct: 145 EGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYS 204

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N     AI VF  M LEG++ D  TF +++++C  L +   GR +H  +      +DV 
Sbjct: 205 QNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVA 264

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           + T+++  Y K G +D+A  +FD +  KN V+W+ ++  + QNG   EA++L  +M+QG 
Sbjct: 265 LGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGG 324

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
              + +T   +L +C            HA    +GV  F+S+                 +
Sbjct: 325 LEVNGITFLGLLFACS-----------HAGRSMDGVDYFVSM-----------------I 356

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
           + FG V  P    + ++I      G  + S ++   M      PDS A+L +L AC   G
Sbjct: 357 RDFGVV--PVFEHYLNLIDLLGRSGQLQLSEDLINSM---PYEPDSSAWLALLGACRMHG 411

Query: 480 LVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASMPI-----EPR- 532
            V  G R   L+   Y + P DS  Y  L++L    G + EA     +M +     +P  
Sbjct: 412 DVDRGARIAELI---YELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGL 468

Query: 533 -----SDTLGAFIGACKVHGSIGLAKWAAEKL 559
                 D +  F+ A K+H  +G      E+L
Sbjct: 469 SSIEVKDRVHEFMAAQKLHPQLGRIHAEIERL 500


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 190/599 (31%), Positives = 307/599 (51%), Gaps = 11/599 (1%)

Query: 22  LTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQ 81
           L   + Q  + +++N      S L    +      +  H  H  ++ A K  A     + 
Sbjct: 68  LLAQMPQPASVSVSNTLLRSYSGLGFHRQALALYSQMRHFDHLTFTFAAKACAGLRLRRH 127

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G+ +H   +  G  +   +QN ++ +Y++C+     E +F  +  R  V+WNT+I+G + 
Sbjct: 128 GRAVHGRALAAGFGSDAYVQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVK 187

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G        F  M+   V +D  +  S+L AC QA D+  GR +H   +  G G    V
Sbjct: 188 DGRAERALEVFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAV 247

Query: 200 SSALVDLYGKCGFVEDARRVFDE-VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            +AL+D+YGKCG +EDARRVFDE    +D+V W VM+  Y LN     A A+ + M +  
Sbjct: 248 KNALIDMYGKCGSLEDARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSS 307

Query: 259 -MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
             + +  T + L+++C +L S K  +  H L I+     D++V T+LVD YAK G +   
Sbjct: 308 EAQPNAVTMAHLLSACASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMG-- 365

Query: 318 CRVFDGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
             V D +  K      +WN  + G+ Q   G++A+ L + ML  S  PD  T+AS++ + 
Sbjct: 366 --VIDMVVEKGSRRTETWNAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAY 423

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
              +   +   +H   +  G      I   LI+ Y+K G +  A + F  + E D+V WT
Sbjct: 424 AESADLVQANNIHCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWT 483

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++I  Y  HG ++ ++ ++ +M+   V P+++    +L +CSH G+V EGLR FN M   
Sbjct: 484 TVIAGYGMHGHAQTAMLLYSRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGV 543

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKW 554
           + ++P++EHY CL D+LGR G + EAY  +  MP EP      + +GAC +H ++   + 
Sbjct: 544 HGLMPNAEHYLCLVDMLGRAGRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEV 603

Query: 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613
           AA+ L ELEP    NY L+  VYA+   W DV  LR++M     HK PG   ++   E+
Sbjct: 604 AAKHLFELEPDNVGNYVLLGKVYAAAERWSDVQHLRRVMEGMDLHKDPGYCVVDAKSEV 662


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 179/531 (33%), Positives = 299/531 (56%), Gaps = 3/531 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           + G  +H+ I+  G  + + L  +++  Y K        K+FD M  R +V+W+  ISG 
Sbjct: 14  KPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGY 73

Query: 140 IN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
               C  +    F  ML    + +  T+ S+LRAC     ++ G ++   + K  F  N 
Sbjct: 74  SQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNL 133

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            V SAL+DL+ KCG +EDA  +F  +  RD+V WN ++  YA+      +  +F  M  E
Sbjct: 134 IVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQE 193

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           GM  D FTF S++ + G         QIH L+I+  +   + ++ SL+D YAK  ++  A
Sbjct: 194 GMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASA 253

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             ++  M  K+++S   ++ G+ ++ +   +A+ L +++ Q     D+V L S+ + C +
Sbjct: 254 HCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICAN 313

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           +S     RQ+HA A+K      +++ NALI+ Y+K G I  A + F  ++E ++++WTS+
Sbjct: 314 ISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSL 373

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  Y  HG   E+I +F+KM    ++P+ I FL +L AC+H GL  EG   FN MIS Y+
Sbjct: 374 ITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYN 433

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           ILP +EH++C+ DL  R GLL EAY+L+  M I+P +   GA +GAC ++G++ LA+ AA
Sbjct: 434 ILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAA 493

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
             L +++P   VNY +++++YA+   W +  ++RK+M +    K PG S+I
Sbjct: 494 IHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 196/388 (50%), Gaps = 13/388 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L+       LQ+G Q+   + K    + L +Q+ +L ++ KC   +D   LF  M 
Sbjct: 101 YGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMME 160

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WN +I      G  G+    FR M+ + +  D  TF S+L+A   A D+    +
Sbjct: 161 ERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQ 220

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC- 242
           +H  I+++G+G +  +S +L+D Y KC  +  A  ++  +  +D++    +++ YA +  
Sbjct: 221 IHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSN 280

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F  ++   MK D     S+ N C  + S  +GRQIH L +K     DV +  
Sbjct: 281 YSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGN 340

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+DMYAK+G I DA R F+ M  KNV+SW +++ G+G +G G EA+ L + M      P
Sbjct: 341 ALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKP 400

Query: 363 DEVTLASILSSCGSLSIS-----CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
           +++T  S+L +C    ++     C    +  Y I    + F    + +++ +++ G +  
Sbjct: 401 NDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHF----SCMVDLFARGGLLEE 456

Query: 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           A      +  +P+   W +I+GA   +G
Sbjct: 457 AYNLINKMNIKPNASLWGAILGACYIYG 484



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 206/415 (49%), Gaps = 4/415 (0%)

Query: 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
           L+ C++    + G  +H+ IL  GF  N  +S+ L+  Y K G    AR+VFD +  R +
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V W+  +S Y+ N     A+ VF  M   G K + FT+ S++ +C  L   + G QI G 
Sbjct: 64  VSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGC 123

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           + K  F  +++V ++L+D+++K G ++DA  +F  M  ++VVSWN ++  +   G   ++
Sbjct: 124 LEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDS 183

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
            ++ R M+Q    PD  T  S+L + G  S      Q+H   I+ G  + +S+  +LI+A
Sbjct: 184 FRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDA 243

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF-HGLSKESIEVFEKMLSHAVRPDSIA 467
           Y+KC S+A A   + S+   D+++ T+++  YA     S +++++F+++    ++ D + 
Sbjct: 244 YAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVI 303

Query: 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
              + + C++   +S G R  + +        D      L D+  + G + +A      M
Sbjct: 304 LCSMFNICANISSLSVG-RQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEM 362

Query: 528 PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
             E    +  + I     HG  G    A  K +E E  KP +   +S ++A   C
Sbjct: 363 E-EKNVISWTSLITGYGSHGH-GHEAIALFKKMEYEGLKPNDITFLSLLFACNHC 415


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/464 (35%), Positives = 285/464 (61%), Gaps = 4/464 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           ++++L  CV    I  G+R+H+ ++K  +  + ++ + L+ LY KC  + DAR +FDE+ 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC-GTLGSSKLGR 283
            +++V W  M+S Y+       A+ +F  M     + ++FTF++++ SC G+LG  + GR
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF-ETGR 211

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIH + IK++++  + V +SL+DMYAK+G I DA  VF  +  ++VV+   ++ G+ Q G
Sbjct: 212 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 271

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA+KL R +       + VT AS+L++   L+     +QVH++ +++G  +++ + N
Sbjct: 272 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLN 331

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAVR 462
           +LI+ YSKCG++  A + F S+ E   ++W +++  Y+ HG+++E +E+F+ M   + V+
Sbjct: 332 SLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVK 391

Query: 463 PDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
           PDSI +L VLS CSHG L   GL  ++N++     I PD  HY C+ DLLGR G + EA+
Sbjct: 392 PDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAF 451

Query: 522 DLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581
           D +  MP  P +   G+ +G+C+VH  + +     +KLLELEP    NY ++SN+YAS  
Sbjct: 452 DFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAG 511

Query: 582 CWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
            W D+  +R +M++    K PG SW+E+   +HTF +SD +HP+
Sbjct: 512 KWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPR 555



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 214/404 (52%), Gaps = 14/404 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           +++G+++H+H++K      + L+ +++ +Y KC    D  ++FDEM  +N+V+W  +IS 
Sbjct: 106 IREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISA 165

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        F  ML  +   +H TF ++L +C  +   E GR++HS  +K  +  +
Sbjct: 166 YSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESH 225

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV S+L+D+Y K G + DA  VF  +  RD+V    ++S YA   L + A+ +F  +++
Sbjct: 226 MFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI 285

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           EGM  +  T++S++ +   L +   G+Q+H  V++      V++  SL+DMY+K GN+  
Sbjct: 286 EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCY 345

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCPDEVTLASILSSCG 375
           A R+FD M  +  +SWN M+VG+ ++G  RE ++L + M  +    PD +T  ++LS C 
Sbjct: 346 ARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 405

Query: 376 SLSISCETRQVHAYAI--KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE----PD 429
              +     ++    +  K+G++  +     +++   + G +  A   F  +K+    P 
Sbjct: 406 HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKMPFVPT 462

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
              W S++G+   H   +  I V +K+L   + P++     +LS
Sbjct: 463 AAIWGSLLGSCRVHSDVEIGIIVGQKLLE--LEPENAGNYVILS 504



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 147/281 (52%), Gaps = 13/281 (4%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M + G +  +  + +++N C +  + + G+++H  +IK  +   V + T L+ +Y K   
Sbjct: 81  MAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC 140

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           + DA  +FD M  KNVVSW  M+  + Q G   EA+ L  +ML+    P+  T A+IL+S
Sbjct: 141 LGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 200

Query: 374 C-GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           C GSL      RQ+H+ AIK   ++ + + ++L++ Y+K G I  A   F  + E D+V 
Sbjct: 201 CYGSLGFET-GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 259

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            T+II  YA  GL +E++++F ++    +  +S+ +  VL+A S    ++ G +  +   
Sbjct: 260 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHS--- 316

Query: 493 SDYHILPDSEH-----YTCLTDLLGRVGLLVEAYDLLASMP 528
              H+L   ++        L D+  + G +  A  +  SMP
Sbjct: 317 ---HVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP 354



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 14/229 (6%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E  +S    Y+  L   +    L  GKQ+HSH+++ G  + + L N ++ +Y KC     
Sbjct: 286 EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCY 345

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDN-VRLDHITFNSLLRACV 173
             ++FD M  R  ++WN ++ G    G    V   F+ M  +N V+ D IT+ ++L  C 
Sbjct: 346 ARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 405

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV-- 229
                ++G  +   ++    G+   +     +VDL G+ G VE+A   FD +     V  
Sbjct: 406 HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKMPFVPT 462

Query: 230 --LWNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
             +W  ++ SC   + +  G I    L+ LE    G+Y   S+L  S G
Sbjct: 463 AAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAG 511


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/531 (32%), Positives = 295/531 (55%), Gaps = 4/531 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+ + ++G  + L + + +++ Y   K+ +D  K+F+EM  R++V+W  +IS    
Sbjct: 141 GDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQ 200

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           CG   NV      M  +  + + IT  SLL AC Q   ++ G  +++ + + G   +  +
Sbjct: 201 CGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDI 260

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            +AL+ +Y KCG + DA + F  +  R+   WN ++  +  N     A+ +F  M  +G+
Sbjct: 261 RNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGV 320

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T  S++++   LG  + GR +H  +       D+++  SL++MYAK G++  A  
Sbjct: 321 IPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEI 380

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F+ M  +++VSW  MV G+ +    R A  L  DM        E+ L S+LS+C  L  
Sbjct: 381 IFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGA 440

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
             + R++H+Y  +  V+  + +E+AL++ Y+KCG I  A + F  ++    + W ++IG 
Sbjct: 441 LDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGG 500

Query: 440 YAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
            A  G  KE++ +FE++L     +PD+I    VL AC+H G+V EGL YFNLM++   I+
Sbjct: 501 LASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLT-LGIV 559

Query: 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
           PD+EHY C+ DLLGR GLL EAY+ +  MPI+P     G+ + AC+VH  + L K   + 
Sbjct: 560 PDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQH 619

Query: 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
           +++L P+    + L+SN++A E  W DV ++R MM      K PG S I++
Sbjct: 620 IIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 244/492 (49%), Gaps = 10/492 (2%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM---EKLFDEMRVRNIVTWNTLISGII 140
           +LH  +++  L +   +  +++ +     +  DM    K+FD M     + WN +I G  
Sbjct: 36  ELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYN 95

Query: 141 NCGG--NVTPYFRRMLLDNVRLDHITFNSLLR---ACVQADDIEVGRRLHSFILKVGFGL 195
           +C    +    FR M    V  D+ T  ++ +   A         G  +H+ + ++GF  
Sbjct: 96  SCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFAS 155

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + FV S L++ YG    VEDAR+VF+E+  RD+V W +M+S +A     D  +   + M+
Sbjct: 156 DLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQ 215

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            EG K +  T  SL+++CG + +   G  ++  V +   + DV +  +L+ MY K G + 
Sbjct: 216 SEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMS 275

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
           DA + F GM  +N  SWNT++ GF QNG  +EA+ +  +ML     PD +TL S+LS+  
Sbjct: 276 DAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYA 335

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
            L    + R +H Y   + +   + ++N+LIN Y+KCG +A A   F ++   D+V+WT+
Sbjct: 336 QLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTA 395

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           ++  Y      + +  +F+ M    V    +A + +LSACS  G + +G R  +  I + 
Sbjct: 396 MVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKG-REIHSYIKEK 454

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            +  D    + L D+  + G +  A ++ + M    ++    A IG     G    A   
Sbjct: 455 SVRTDMWLESALVDMYAKCGCIDAAAEIFSRMR-HKQTLAWNAMIGGLASQGQGKEAVAL 513

Query: 556 AEKLLELEPSKP 567
            E+LL+L   KP
Sbjct: 514 FEQLLKLRDPKP 525



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 182/369 (49%), Gaps = 4/369 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           + +G  +++ + + G+   + ++N ++ +YVKC    D  K F  M +RN  +WNTLI G
Sbjct: 239 VDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDG 298

Query: 139 IINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
            +  G +      F  ML D V  D IT  S+L    Q  D++ GR LH++I       +
Sbjct: 299 FVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCD 358

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + ++L+++Y KCG +  A  +F+ +  RD+V W  MV  Y        A  +F+ M++
Sbjct: 359 IILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKV 418

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +        SL+++C  LG+   GR+IH  + ++S   D+ + ++LVDMYAK G ID 
Sbjct: 419 RDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDA 478

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCG 375
           A  +F  M  K  ++WN M+ G    G G+EAV L   +L+     PD +TL  +L +C 
Sbjct: 479 AAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACT 538

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWT 434
            + +  E        +  G+         +++   + G +  A      +  +P+ V W 
Sbjct: 539 HVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWG 598

Query: 435 SIIGAYAFH 443
           S++ A   H
Sbjct: 599 SLLAACRVH 607



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 4/273 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A+ G LQQG+ LH++I    +   + LQN ++++Y KC      E +F+ M  R+I
Sbjct: 331 LSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDI 390

Query: 130 VTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W  ++ G +      T +  F  M + +V    +   SLL AC Q   ++ GR +HS+
Sbjct: 391 VSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSY 450

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           I +     + ++ SALVD+Y KCG ++ A  +F  +  +  + WN M+   A    G  A
Sbjct: 451 IKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEA 510

Query: 248 IAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           +A+F  L++L   K D  T   ++ +C  +G    G     L++      D      +VD
Sbjct: 511 VALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVD 570

Query: 307 MYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVG 338
           +  + G +D+A      M  + N V W +++  
Sbjct: 571 LLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAA 603


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 208/658 (31%), Positives = 326/658 (49%), Gaps = 64/658 (9%)

Query: 14  HFKRPLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVS 73
           H +RP +Y  P      T   T A       +S+ +RN         +   F +  L+ S
Sbjct: 16  HVQRPTNYPKPHFEDPHTVKCTKA-------ISTHMRNG----HCDLALCVFDAMPLRNS 64

Query: 74  AKF-----GFLQQGK-QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR 127
             +     G+L+  K  L   +        L   N +L  Y + +   D   LFD M  +
Sbjct: 65  VSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK 124

Query: 128 NIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
           ++V+WN ++SG +  G        F RM   N     I++N LL A V++  +E  RRL 
Sbjct: 125 DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN----SISWNGLLAAYVRSGRLEEARRL- 179

Query: 186 SFILKVGFGL---NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
            F  K  + L   NC +       Y K   + DAR++FD++  RDL+ WN M+S YA   
Sbjct: 180 -FESKSDWELISCNCLMGG-----YVKRNMLGDARQLFDQIPVRDLISWNTMISGYA--- 230

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG-LVIKQSFDLDVLVA 301
             DG ++    +  E    D FT++++V +    G     R++   +  K+    +V++A
Sbjct: 231 -QDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIA 289

Query: 302 --------------------------TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
                                       ++  Y +NG++  A  +FD M  ++ VSW  +
Sbjct: 290 GYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAI 349

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           + G+ QNG   EA+ +L +M +     +  T    LS+C  ++     +QVH   ++ G 
Sbjct: 350 IAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGY 409

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
           +    + NAL+  Y KCG I  A   F  V+  D+V+W +++  YA HG  ++++ VFE 
Sbjct: 410 EKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFES 469

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M++  V+PD I  + VLSACSH GL   G  YF+ M  DY I P+S+HY C+ DLLGR G
Sbjct: 470 MITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAG 529

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            L EA +L+ +MP EP + T GA +GA ++HG++ L + AAE + ++EP     Y L+SN
Sbjct: 530 CLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSN 589

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           +YA+   W DV+++R  MR     K PG SW+E+  +IHTF   D  HP+   +YA L
Sbjct: 590 LYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFL 647


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 189/589 (32%), Positives = 312/589 (52%), Gaps = 40/589 (6%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L Q  Q+H+  +  GL     LQ  ++   +   + D    + D+       +WN+LI  
Sbjct: 12  LTQIHQIHAQTLIHGL----PLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRA 67

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G   N    + +ML  + +  + TF  +L+AC     +  G ++H+ +L++GFG +
Sbjct: 68  YTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSD 127

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV ++L+D+Y KC  ++ AR  +D++  RD V WN ++S Y      + A  +F  M +
Sbjct: 128 LFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPM 187

Query: 257 E-------------GMKGDYF---------------------TFSSLVNSCGTLGSSKLG 282
                         G +GD+                      T   L+++C TL + ++G
Sbjct: 188 RRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVG 247

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           R +   +      L+ ++ T+L+DMY+K G+++ A R+FDG++ KN+ SWN ++ G  Q 
Sbjct: 248 RFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQG 307

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   EA+ L R M   S  P+E+TL ++LS+C  L      R+VH Y  +NG+   + + 
Sbjct: 308 GLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILA 367

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            AL++ Y+KCG I  A   F    E D+  W ++I   A+HG  ++S+ VF +M+   V+
Sbjct: 368 TALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQ 427

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           P+ + F+ VLSAC+H GLV EG   F+ M   + + P  EHY C+ DLLGR G L EAY+
Sbjct: 428 PNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYE 487

Query: 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
           L+ +M I P S   GA + AC++H ++ LA   +E ++  +        L+SN+YAS   
Sbjct: 488 LVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGR 547

Query: 583 WFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA 631
           W DVAR+R+ +++    K  GCSW+E+ G +H FV  D +H ++  +Y 
Sbjct: 548 WKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYG 596



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 225/427 (52%), Gaps = 38/427 (8%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +  ST  ++  +   LK  +  G + +G+Q+H+H+++LG  + L + N ++ +Y KC   
Sbjct: 85  LRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRL 144

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGG---------------NVTPY---------- 149
           D     +D+M  R+ V+WN++ISG +  G                NV  +          
Sbjct: 145 DSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKE 204

Query: 150 ---------FRRMLL--DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
                    FR+ML+  D V+ +  T   LL AC    + EVGR L  FI      LN  
Sbjct: 205 GDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTI 264

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
           + +AL+D+Y KCG VE A R+FD V C++L  WN +++      L + AI ++  M+ + 
Sbjct: 265 LVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQS 324

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           +K +  T  +++++C  LG+ +LGR++H  + +   DL+V++AT+LVDMYAK G IDDAC
Sbjct: 325 VKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDAC 384

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
            +F   + K+V  WN M++G   +GDGR+++ +   M++    P++VT   +LS+C    
Sbjct: 385 LIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSG 444

Query: 379 ISCETR-QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS-VKEPDLVTWTSI 436
           +  E R Q  + A K+G+   L     +++   + G +  A +   + +  PD + W ++
Sbjct: 445 LVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGAL 504

Query: 437 IGAYAFH 443
           + A   H
Sbjct: 505 LSACRIH 511



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 173/388 (44%), Gaps = 42/388 (10%)

Query: 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226
           SLLR       I    ++H+  L  G  L   +   L+DL+     ++ AR V D+    
Sbjct: 4   SLLRTATSLTQIH---QIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSP 56

Query: 227 DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286
               WN ++  Y ++     ++ ++  M     K   FTF  ++ +C TLGS   G QIH
Sbjct: 57  TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116

Query: 287 GLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM---------------------- 324
             V++  F  D+ V  SL+DMY K   +D A   +D M                      
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176

Query: 325 ----------TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS--FCPDEVTLASILS 372
                       +NVV W  M+ G+G+ GD  E + L R ML  +    P+  T+  +LS
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVT 432
           +C +L      R +  +   N +     +  ALI+ YSKCG +  A + F  V   +L +
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS 296

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           W +II      GL +E+I+++  M + +V+P+ I  + VLSAC+  G +  G R  +L +
Sbjct: 297 WNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELG-REVHLYL 355

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEA 520
               +  +    T L D+  + G + +A
Sbjct: 356 GRNGLDLNVILATALVDMYAKCGKIDDA 383


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/567 (31%), Positives = 307/567 (54%), Gaps = 8/567 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           +K   L+ G  LH+ ++K G  + + + N VL++Y KC       ++FDEM  +N+V+W+
Sbjct: 14  SKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWS 73

Query: 134 TLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
            +ISG    G     +  Y +  L+ N       F S++ AC     + +G+++HS  LK
Sbjct: 74  AMISGYDQAGEPQMAIDLYSQMFLVPN----EYVFASVISACASLSAVTLGQKIHSRSLK 129

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G+    FVS++L+ +Y KC    DA  VF      + V +N +++ +  N   +  +  
Sbjct: 130 FGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEF 189

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F LMR +G+  D F F  ++  C T  + K G ++H   +K + D    +   ++ MY++
Sbjct: 190 FKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSE 249

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLAS 369
              I +A + F  +  K+V+SWNT++       D  + +++ + M + +   PD+ T  S
Sbjct: 250 LNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTS 309

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
            L++C  L+     +Q+HA+ ++  +   L + NAL+N Y+KCG I  A   F  +   +
Sbjct: 310 ALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHN 369

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           LV+W +II  +  HGL + ++E+FE+M +  +RPDS+ F+ +L+AC+H GLV +G  YFN
Sbjct: 370 LVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFN 429

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            M   Y I PD EH++CL D+LGR G L EA + +   P       L + + A ++HG +
Sbjct: 430 SMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDV 489

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            + +  A+ LL+L+P     Y L+SN+YAS+  W  VA  RK ++ +   K PG S IE+
Sbjct: 490 VIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEV 549

Query: 610 AGEIHTFVSSDRSHPQAVHMYAMLCTV 636
            G +  F   D +H +   +  +L T+
Sbjct: 550 NGSVEKFTIGDFTHLRIKEIKGILKTL 576



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 178/365 (48%), Gaps = 5/365 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T +SLL  C +   +  G  LH+ +LK G   + F+S+ ++++Y KCG    AR+VFDE+
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             ++LV W+ M+S Y        AI +++ M L     + + F+S++++C +L +  LG+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSAVTLGQ 121

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IH   +K  ++    V+ SL+ MY K     DA  VF      N VS+N ++ GF +N 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
                ++  + M Q    PD      +L  C +        ++H   +K  + +   I N
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VR 462
            +I  YS+   I  A + F  ++E D+++W ++I A +      + + VF+ M     VR
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVR 301

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD   F   L+AC+    +S G +  +  +    +  D      L ++  + G +  AYD
Sbjct: 302 PDDFTFTSALAACAGLASMSHG-KQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYD 360

Query: 523 LLASM 527
           + + M
Sbjct: 361 IFSKM 365



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 156/313 (49%), Gaps = 5/313 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  +   A    +  G+++HS  +K G  +   + N ++ +Y+KC    D   +F    
Sbjct: 104 FASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTP 163

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V++N LI+G +          +F+ M    +  D   F  +L  C   ++++ G  
Sbjct: 164 EPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAE 223

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV-SCYALNC 242
           LH   +K+      F+ + ++ +Y +   +++A + F  +  +D++ WN ++ +C   + 
Sbjct: 224 LHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDD 283

Query: 243 LGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              G + VF  M  E  ++ D FTF+S + +C  L S   G+QIH  +++     D+ V 
Sbjct: 284 HAKG-LRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVG 342

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +LV+MYAK G I  A  +F  M   N+VSWNT++ GFG +G G  AV+L   M      
Sbjct: 343 NALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIR 402

Query: 362 PDEVTLASILSSC 374
           PD VT   +L++C
Sbjct: 403 PDSVTFIGLLTAC 415



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL   A    +  GKQ+H+H+M+  L   L + N ++++Y KC        +F +M 
Sbjct: 307 FTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMV 366

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR- 182
             N+V+WNT+I+G  N   G      F +M    +R D +TF  LL AC  A  ++ G+ 
Sbjct: 367 HHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQL 426

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             +S     G   +    S L+D+ G+ G + +A     E   R    WN
Sbjct: 427 YFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEA-----EEYMRKFPFWN 471


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 293/537 (54%), Gaps = 3/537 (0%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRML-LDNVRLDHI 163
           +Y K     D  KLFDEM +R+ V+WN +ISG +  G     +  F++M  L   RLD  
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T  ++L AC + +   V + +H   +  GF     V +AL+  Y KCGF     +VFDE+
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
           L R+++ W  ++S    + L   ++ +F  M    ++ +  T+ S + +C  L + + G 
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGC 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           QIHG V K     D  V ++L+DMY+K G++ D  ++F+     + VS   ++ GF QNG
Sbjct: 181 QIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNG 240

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              EA++    ML+     D   ++++L   G+ +     +Q+H+  IK    +   + N
Sbjct: 241 FEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGN 300

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            LIN YSKCG +  + + F  +   + V+W S+I A+A HG    +++++++M    V P
Sbjct: 301 GLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEP 360

Query: 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
             + FL +L ACSH GLV +G+ +   M   + + P  EHY C+ D+LGR GLL EA   
Sbjct: 361 TDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTF 420

Query: 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583
           +  +PI+P      A +GAC +HG   + K+AAE L+   P KP  Y L++N+Y+S+  W
Sbjct: 421 IEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRW 480

Query: 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640
            + A+  K M++ C  K  G SWIEI   +H+FV  D+ HPQA  +Y +L  +FG M
Sbjct: 481 KERAKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHM 537



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 190/385 (49%), Gaps = 28/385 (7%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + GF+   K +H   +  G   ++S+ N ++  Y KC       ++FDEM  RN++TW  
Sbjct: 73  ELGFVN--KMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTA 130

Query: 135 LISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG++      +    F  M    V  + +T+ S L AC     +  G ++H  + K+G
Sbjct: 131 IISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLG 190

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  V SAL+D+Y KCG + D  ++F+     D V   ++++ +A N   + A+  F 
Sbjct: 191 LQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFV 250

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M   G + D    S+++   G   S  LG+QIH LVIK+SF  +  V   L++MY+K G
Sbjct: 251 KMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCG 310

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
           +++D+ +VF  M   N VSWN+M+  F ++GDG  A++L ++M      P +VT  S+L 
Sbjct: 311 DLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLH 370

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENA------------LINAYSKCGSIAGALQ 420
           +C            H   ++ G++   S+               +++   + G +  A  
Sbjct: 371 ACS-----------HVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKT 419

Query: 421 CF-GSVKEPDLVTWTSIIGAYAFHG 444
              G   +PD++ W +++GA   HG
Sbjct: 420 FIEGLPIKPDVLVWQALLGACGIHG 444



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 175/356 (49%), Gaps = 24/356 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y  +L   +    L++G Q+H  + KLGL +   +++ ++ +Y KC +  D  ++F+   
Sbjct: 163 YLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAG 222

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V+   +++G    G       +F +ML     +D    +++L        + +G++
Sbjct: 223 QLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQ 282

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS ++K  FG N FV + L+++Y KCG +ED+ +VF  + C + V WN M++ +A +  
Sbjct: 283 IHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGD 342

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-------RQIHGLVIKQSFDL 296
           G  A+ ++  MRL+G++    TF SL+++C  +G  + G        ++H L  +     
Sbjct: 343 GSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEH-- 400

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLL 352
                  +VDM  + G +++A    +G+  K +V+ W  ++   G +GD   G+ A + L
Sbjct: 401 ----YACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHL 456

Query: 353 RDMLQGSFCPDE-VTLASILSSCGSLSISCET--RQVHAYAIKNGVQAFLSIENAL 405
             +L     P   + LA+I SS G      +T  R       K    +++ IEN L
Sbjct: 457 --ILSAPEKPSPYILLANIYSSKGRWKERAKTIKRMKEMCVAKETGISWIEIENNL 510


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 289/520 (55%), Gaps = 17/520 (3%)

Query: 128  NIVTWNTLISGIINCGGNVTPY-----FRRMLLDNVRLDHITFNSLLRACVQADDIEVGR 182
            N+ +WN++I+ +   G +V         R++ L   R    +F   +++C    D+  GR
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS---SFPCTIKSCSALCDLVSGR 1162

Query: 183  RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
              H      GF  + FVSSAL+D+Y KCG ++DAR +FDE+  R++V W  M++ Y  N 
Sbjct: 1163 MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 1222

Query: 243  LGDGAIAVFNLMRLE--------GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294
              D A+ +F     E         +  D     S++++C  +    +   +HG V+K+ F
Sbjct: 1223 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 1282

Query: 295  DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRD 354
            D  + V  +L+D YAK G    + +VFD M  K+ +SWN+M+  + Q+G   EA+++   
Sbjct: 1283 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 1342

Query: 355  MLQG-SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413
            M++      + VTL+++L +C         + +H   IK  ++  + +  ++I+ Y KCG
Sbjct: 1343 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG 1402

Query: 414  SIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
             +  A + F  +KE ++ +WT+++  Y  HG +KE++++F KM+   V+P+ I F+ VL+
Sbjct: 1403 RVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLA 1462

Query: 474  ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS 533
            ACSH GLV EG  +FN M   Y I P  EHY C+ DL GR G L EAY+L+  M ++P  
Sbjct: 1463 ACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDF 1522

Query: 534  DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593
               G+ +GAC++H ++ L + AA+KL EL+P     Y L+SN+YA    W DV R+R +M
Sbjct: 1523 VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLM 1582

Query: 594  RDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            ++    K PG S +E+ G +H F+  D+ HP    +Y  L
Sbjct: 1583 KNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYL 1622



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 202/396 (51%), Gaps = 36/396 (9%)

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N+R     F  LL+ C     +   R++H+ I++ G   +  ++  L+ LY   G +  A
Sbjct: 24  NIRAKKALF--LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYA 78

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             +F ++       WN+++    +N L + A+ ++  M  +G+  D FTF  ++ +C   
Sbjct: 79  ILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF 138

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG------------------------ 312
            S  LG+ +HG +IK  F  DV V  +L+D Y K G                        
Sbjct: 139 LSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVI 198

Query: 313 -------NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
                  ++ +A R+FD + +KNVVSW  M+ G+ +N    EA++L + M   +  P+E 
Sbjct: 199 SGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEY 258

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+ S++ +C  + I    R +H YAIKN ++  + +  ALI+ YSKCGSI  A++ F ++
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
               L TW S+I +   HGL +E++ +F +M    V+PD+I F+ VL AC H   V EG 
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521
            YF  M   Y I P  EHY C+T+L  R   L EA+
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 197/382 (51%), Gaps = 21/382 (5%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L  G+  H      G    L + + ++ +Y KC    D   LFDE+ +RN+V+W ++I+G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 139  IINC--GGNVTPYFRRMLLD--------NVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
             +      N    F+  L +        NV LD +   S+L AC +     +   +H F+
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 189  LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
            +K GF  +  V + L+D Y KCG    +++VFD +  +D + WN M++ YA + L   A+
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 1337

Query: 249  AVFN-LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
             VF+ ++R  G++ +  T S+++ +C   G+ + G+ IH  VIK   + +V V TS++DM
Sbjct: 1338 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 1397

Query: 308  YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
            Y K G ++ A + FD M  KNV SW  MV G+G +G  +EA+ +   M++    P+ +T 
Sbjct: 1398 YCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITF 1457

Query: 368  ASILSSCGSLSISCE-----TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
             S+L++C    +  E         H Y I+ G++ +      +++ + + G +  A    
Sbjct: 1458 VSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY----GCMVDLFGRAGCLNEAYNLI 1513

Query: 423  GSVK-EPDLVTWTSIIGAYAFH 443
              +K +PD V W S++GA   H
Sbjct: 1514 KRMKMKPDFVVWGSLLGACRIH 1535



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 170/349 (48%), Gaps = 44/349 (12%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--II 140
           +Q+H+ I++ GL N   L  +++H+Y           LF +++     TWN +I    I 
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
                    ++ M+   +  D  TF  +++AC     I++G+ +H  ++K GF  + FV 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 201 SALVDLYGKCGF-------------------------------VEDARRVFDEVLCRDLV 229
           + L+D Y KCG                                +++ARR+FDE+  +++V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W  M++ Y  N   + A+ +F  M+ E +  + +T  SL+ +C  +G   LGR IH   
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           IK   ++ V + T+L+DMY+K G+I DA  VF+ M  K++ +WN+M+   G +G G+EA+
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
            L  +M + +  PD +T   +L +C           VH   +K G   F
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCAC-----------VHIKNVKEGCAYF 381



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 145/291 (49%), Gaps = 48/291 (16%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           +K    F  +  GK +H  ++K G    + +QN ++  Y KC       K+F++MRVRN+
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191

Query: 130 VTWNTLISGIINCG--------------GNVTPY-------------------FRRMLLD 156
           V+W T+ISG+I+CG               NV  +                   F+RM  +
Sbjct: 192 VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
           N+  +  T  SL++AC +   + +GR +H + +K    +  ++ +AL+D+Y KCG ++DA
Sbjct: 252 NIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDA 311

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF+ +  + L  WN M++   ++ LG  A+ +F+ M    +K D  TF  ++ +C  +
Sbjct: 312 IEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHI 371

Query: 277 GSSKLG-------RQIHGLV-IKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
            + K G        Q +G+  I + ++        + ++YA++ N+D+A +
Sbjct: 372 KNVKEGCAYFTRMTQHYGIAPIPEHYE-------CMTELYARSNNLDEAFK 415



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 67   SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
            S  L   A  G L+ GK +H  ++K+ L   + +   ++ +Y KC   +  +K FD M+ 
Sbjct: 1357 SAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE 1416

Query: 127  RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            +N+ +W  +++G    G        F +M+   V+ ++ITF S+L AC  A  +E G   
Sbjct: 1417 KNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG--W 1474

Query: 185  HSF-ILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMV-SCYA 239
            H F  +K  + +   +     +VDL+G+ G + +A  +   +  + D V+W  ++ +C  
Sbjct: 1475 HWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRI 1534

Query: 240  LNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
               +  G IA   L  L+    G Y   S+L    G
Sbjct: 1535 HKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAG 1570


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 312/566 (55%), Gaps = 18/566 (3%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           GFL   +QLH+   + GL   + + N ++  Y +  +  +   +FD+M  R++V+WN LI
Sbjct: 147 GFLV--RQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALI 204

Query: 137 SGII---NCGGNVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
            G+    +C   V   F RML D +V+ D I+  S++ AC     +E+GR++H F +K+G
Sbjct: 205 CGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLG 264

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                 + + LV +Y KCG    ARR+FD +  RD+V W       A++  G+ A+ +FN
Sbjct: 265 VEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTT-----AISMDGEDALTLFN 319

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR +G+  +  TF +L+++      ++  + +H   +K +   +   + SL+ MYAK  
Sbjct: 320 GMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMYAKAR 379

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            +DDA  VFD M  + +++WN ++ G+ QNG   +A++L   M +    P+E T AS+LS
Sbjct: 380 RMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMAR-CLTPNETTFASVLS 438

Query: 373 SCGSL-SISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           +  ++ ++S    Q+ H+ A+  G      +  ALI+ Y+K G++  + + F   ++  L
Sbjct: 439 AVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQRSL 498

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           + WT+II A A HG     + +F  M    V PD +  L VL+AC +GG+V  G   F+ 
Sbjct: 499 IAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGRDIFDS 558

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           M +D  +    EHY+C+ D+LGR G L EA +L+  MP  P    L + +GAC++HG   
Sbjct: 559 MAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLGACRIHGDAE 618

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI- 609
           + +  A  L E EP++   Y L+SN+YA    W  VA++R+ MRD    K  G SW++  
Sbjct: 619 IGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVAKVRRKMRDRGVKKEIGFSWVDAG 678

Query: 610 AGE---IHTFVSSDRSHPQAVHMYAM 632
           AGE   +H F S D +HP+   +YA+
Sbjct: 679 AGEALHLHKFSSDDTTHPRTEEIYAV 704



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 225/476 (47%), Gaps = 24/476 (5%)

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
           LH+  +  GL    ++ N +   Y K  +F     +F   R R++ ++NT++S   +   
Sbjct: 54  LHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVGVFAAARARDVSSYNTILSAFPDPAE 113

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
            +      +    VR D +T    L       +  + R+LH+   + G   + FV +ALV
Sbjct: 114 ALDFASWMLRSGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALV 173

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL--NCLGDGAIAVFNLMRLEG-MKG 261
             Y + G + +AR VFD++  RDLV WN ++   A   +C  +  I VF  M  +G ++ 
Sbjct: 174 TAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAE-VIGVFLRMLRDGDVQP 232

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  +  S++ +CG  G  +LGRQ+HG  +K   +  V +   LV MY K G    A R+F
Sbjct: 233 DRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLF 292

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           D M+ ++VVSW T +     + DG +A+ L   M +    P+EVT  +++S   +L   C
Sbjct: 293 DAMSERDVVSWTTAI-----SMDGEDALTLFNGMRRDGVPPNEVTFVALMS---ALPADC 344

Query: 382 ETR---QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
             R    VHA  +K  V    +  N+LI  Y+K   +  A   F  +   +++ W ++I 
Sbjct: 345 PARGAQMVHAACLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVIS 404

Query: 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS--EGLRYFNLMISDYH 496
            YA +G   +++E+F  M +  + P+   F  VLSA +    VS   G  Y +  +S   
Sbjct: 405 GYAQNGRCNDALELFSSM-ARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALS--M 461

Query: 497 ILPDSEHYT-CLTDLLGRVGLLVEAYDLLASMPIEPRS-DTLGAFIGACKVHGSIG 550
              DSE+    L D+  + G L E+    A    E RS     A I A   HGS G
Sbjct: 462 GFGDSEYVAGALIDMYAKRGNLEESRK--AFHETEQRSLIAWTAIISANARHGSYG 515



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 19/321 (5%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           R++ I F+    A V+A D      LH+  +  G      V+++L   Y K G    A  
Sbjct: 33  RVNPIAFS----AAVRASDPASLPALHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVG 88

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV-FN--LMRLEGMKGDYFTFSSLVNSCGT 275
           VF     RD+  +N ++S +      D A A+ F   ++R   ++ D  T +  ++    
Sbjct: 89  VFAAARARDVSSYNTILSAFP-----DPAEALDFASWMLRSGAVRPDAVTCTVALSLAAG 143

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
            G   L RQ+H L  +     DV V  +LV  Y++ G++ +A  VFD M A+++VSWN +
Sbjct: 144 RGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNAL 203

Query: 336 VVGFGQNGDGREAV--KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           + G  Q+GD    V    LR +  G   PD +++ S++ +CG        RQVH +A+K 
Sbjct: 204 ICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKL 263

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           GV+ ++SI N L+  Y KCG+   A + F ++ E D+V+WT+ I   +  G  ++++ +F
Sbjct: 264 GVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAI---SMDG--EDALTLF 318

Query: 454 EKMLSHAVRPDSIAFLEVLSA 474
             M    V P+ + F+ ++SA
Sbjct: 319 NGMRRDGVPPNEVTFVALMSA 339


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/469 (36%), Positives = 270/469 (57%), Gaps = 1/469 (0%)

Query: 166 NSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225
           ++L+ A      I   R LH  ++K     + F+   LV  Y + G  +DA  +FDE+  
Sbjct: 42  SALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPD 101

Query: 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
           +DLV WN ++S ++        + +   MR E G+K +  T   +V++C  +G   +G+ 
Sbjct: 102 KDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKC 161

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHG+ +K    L+V V  SL+++Y K G ++ AC +F+GM+ +++VSWN+MV      G 
Sbjct: 162 IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGL 221

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             + +     M +     D+ T+ S+L +C +L +      VH Y +  G+   L+I  A
Sbjct: 222 AEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATA 281

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           L++ Y+K G+++ + + FG +  PD V WT+++ +YA HG  +E+IE FE M+   V PD
Sbjct: 282 LLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPD 341

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            + F  +LSACSH GLV EG  YF +M   Y +    EHY+C+ DLLGR G L +AY L+
Sbjct: 342 HVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLI 401

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            SMP+EP S   GA IGAC+V G+I L K  AE+L  L+PS   NY  +SN+Y++   W 
Sbjct: 402 KSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWR 461

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           D +++R +M++    + PGCS+IE   +IH FV  D+SHP    +Y  L
Sbjct: 462 DASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKL 510



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 200/381 (52%), Gaps = 5/381 (1%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI--- 139
           + LH  ++K    N   + +Q++  YV+     D  +LFDE+  +++V+WN+LISG    
Sbjct: 58  RALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRR 117

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            + G  +   FR      ++ + +T   ++ AC    +++VG+ +H   +K G  L   V
Sbjct: 118 ADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKV 177

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
            ++L++LYGKCG +E A  +F+ +  + LV WN MV+ +    L +  I  F +MR  G+
Sbjct: 178 VNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGI 237

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             D  T  SL+ +C  LG  KL   +HG ++    D ++ +AT+L+D+YAK G + D+C+
Sbjct: 238 NSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCK 297

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           VF GM   + V+W  M+  +  +G GREA++    M++    PD VT   +LS+C    +
Sbjct: 298 VFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGL 357

Query: 380 SCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSII 437
             E +       +  GV+  +   + +++   + G +  A +   S+  EP+   W ++I
Sbjct: 358 VEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALI 417

Query: 438 GAYAFHGLSKESIEVFEKMLS 458
           GA    G  +   EV E++ S
Sbjct: 418 GACRVRGNIELGKEVAERLFS 438



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 164/320 (51%), Gaps = 8/320 (2%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G L  GK +H   +K G+  ++ + N ++++Y KC   +    LF+ M V+++V+WN
Sbjct: 151 AGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWN 210

Query: 134 TLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV 191
           ++++  ++ G       YF  M    +  D  T  SLL AC      ++   +H +IL  
Sbjct: 211 SMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNG 270

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
           G   N  +++AL+DLY K G + D+ +VF  ++  D V W  M+S YA++  G  AI  F
Sbjct: 271 GLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHF 330

Query: 252 NLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAK 310
            LM  EG+  D+ TF+ L+++C   G  + G+    ++ +    +L V   + +VD+  +
Sbjct: 331 ELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGR 390

Query: 311 NGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLRDMLQGSFCPDEVT 366
           +G+++DA ++   M  + N   W  ++      G+   G+E  + L   L  S   + +T
Sbjct: 391 SGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFS-LDPSDSRNYIT 449

Query: 367 LASILSSCGSLSISCETRQV 386
           L+++ S+ G    + + R +
Sbjct: 450 LSNMYSAAGQWRDASKVRAL 469


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 278/526 (52%), Gaps = 49/526 (9%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           N ++  Y K   FD+ ++LF  M  +N+V+WN++I+G I          YF+ M   N  
Sbjct: 82  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNT- 140

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
               ++N+++   V+ D +E   RL   + +     N    +A+VD Y K G +E AR +
Sbjct: 141 ---ASWNAMISGLVRYDRVEEASRLFEEMPR----RNVISYTAMVDGYAKIGEIEQARAL 193

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+ +  +++V W VM+S Y  N   D A  +F  M                         
Sbjct: 194 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP------------------------ 229

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
                          D +++  T+++  Y K G  D A  +FD +  +++ SWN M+ G+
Sbjct: 230 ---------------DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGY 274

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QNG G EA+KL   ML+    PD  TL S+L++C SL+   E R+ H   +K+G ++ +
Sbjct: 275 AQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRI 334

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
           SI NALI  Y KCGSI  +   F  +  PD+V+W ++I A+A HG    ++  F +M S+
Sbjct: 335 SICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSN 394

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V PD I FL +LSAC H G V E L +FN MI  Y I+   EH+ CL D+L R G + +
Sbjct: 395 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEK 454

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           AY ++  MP E      GA + AC VH ++ L + AA+K++ELEP     Y ++SN+YA+
Sbjct: 455 AYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 514

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
              W +V R+R +MR+    K P  SW+EI  ++H F+  D SHP+
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPE 560



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 9/236 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           HS     L   +    LQ+G++ H  ++K G  +++S+ N ++ +Y KC +  D E  F 
Sbjct: 299 HSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFR 358

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDI-E 179
           ++   ++V+WN +I+     G        F  M  + V  D ITF SLL AC  A  + E
Sbjct: 359 QIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHE 418

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWN-VMVSC 237
                +S I            + LVD+  + G VE A ++  E+    D  +W  ++ +C
Sbjct: 419 SLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAAC 478

Query: 238 YALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292
           +    +  G +A   ++ LE    G Y   S++  + G  G      ++ GL+ +Q
Sbjct: 479 HVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVT---RVRGLMREQ 531



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 31/203 (15%)

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
             RQ H L IK     DV      +   A+ GNI  A +VFD M  ++ VSWN+++ G+ 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYW 89

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-VHAYAIKN------ 393
           +NG   E+ +L   M   +     V+  S+++ C       E  Q   A   +N      
Sbjct: 90  KNGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNA 145

Query: 394 ---GVQAFLSIEN-----------------ALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
              G+  +  +E                  A+++ Y+K G I  A   F  + + ++V+W
Sbjct: 146 MISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSW 205

Query: 434 TSIIGAYAFHGLSKESIEVFEKM 456
           T +I  Y  +G   E+  +FE+M
Sbjct: 206 TVMISGYVENGKFDEAENLFEQM 228


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 201/629 (31%), Positives = 324/629 (51%), Gaps = 16/629 (2%)

Query: 37  AQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKL---G 93
           A  H RS++SS    +  +  + HS  + ++ A +V +       G   H+   KL    
Sbjct: 102 ALSHFRSMMSS----TDAVLPTPHSFAAVFTAAARVPSA----SAGAVAHAFACKLPSSS 153

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFR 151
             N + +   +L++Y K  A  D  ++FD+M  RN V+W  ++SG     C       FR
Sbjct: 154 GSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFR 213

Query: 152 RMLLD-NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210
            ML +  +  +     ++L A      + +G +LH  +LK G      V ++LV +Y K 
Sbjct: 214 LMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKA 273

Query: 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV 270
             ++ A  VF     R+ + W+ M++ YA N   D A  +F  M   G     FTF  ++
Sbjct: 274 ECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGIL 333

Query: 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM-TAKNV 329
           N+   +G+  +G+Q HGL++K  F+  V V ++LVDMYAK G   DA   F  +    +V
Sbjct: 334 NASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDV 393

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V W  M+ G  QNG+  EA+ L   M +    P  +T+ S+L +C  L+     +Q+HA 
Sbjct: 394 VIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQ 453

Query: 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449
            +K G     S+  AL   YSKCG++  ++  F  + + D+++W SII  ++ HG  +++
Sbjct: 454 ILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDA 513

Query: 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509
           +++FE+M    + PD I F+ VL ACSH GLV  G  YF  M  DY ++P  +HY C+ D
Sbjct: 514 LDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVD 573

Query: 510 LLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569
           +L R G L EA D + S+ I+  +      +GAC+      +  +A E+L+EL       
Sbjct: 574 ILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSA 633

Query: 570 YALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHM 629
           Y L+SN+YA++R W DV R+R +MR     K PGCSW+E+  +++ FV  ++ HP+A  +
Sbjct: 634 YILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELNNQVNVFVVGEQQHPEAEKI 693

Query: 630 YAMLCTVFGLMEENNVSGHCNVL-DKEMD 657
              L  +   M++         L D E+D
Sbjct: 694 NVELIRLAKHMKDEGYRQTYKFLFDDELD 722


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 207/664 (31%), Positives = 327/664 (49%), Gaps = 84/664 (12%)

Query: 35  TNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGL 94
           T    H R  ++S     GT+H S+ S     +  L   +K G +   ++L   +     
Sbjct: 22  TELNHHIRRFVNS----CGTVHSSSDS-----NWVLSNLSKCGRVDDARKLFDVMPDRDE 72

Query: 95  CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRR 152
           C+     N ++  Y      ++  KLF E  +R+ +TW++LISG    G +V     F  
Sbjct: 73  CS----WNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWE 128

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M  +  R +  T+ S+LR C     +E G+++H+  +K  F  N FV + LVD+Y KC  
Sbjct: 129 MQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKC 188

Query: 213 VEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
           + +A  +F+     R+ VLW  MV+ Y+ N  G  AI  F  MR EG++ + FTF S++ 
Sbjct: 189 ILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILT 248

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           +CG++ +   G Q+HG +++  F  +V V ++LVDMY+K G++ +A R+ + M   + VS
Sbjct: 249 ACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS 308

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           WN+M+VG  + G G EA+ L R M       DE T  S+                     
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSL--------------------- 347

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
                    + NAL++ Y+K G    A   F  + + D+++WTS++     +G  +E++ 
Sbjct: 348 ---------VNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALR 398

Query: 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVS----------------------------- 482
           +F +M    + PD I    VLSA  +  LVS                             
Sbjct: 399 LFCEMRIMGIHPDQIVIAAVLSALDNS-LVSMYAKCGCIEDANKVFDSMEIQDVITWTAL 457

Query: 483 --------EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
                    G  YF  M   Y I P  EHY C+ DLLGR G L+EA +LL  M ++P + 
Sbjct: 458 IVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDAT 517

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
              A + AC+VHG++ L + AA  L ELEP   V Y L+SN+Y++   W + A+ R++M+
Sbjct: 518 VWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMK 577

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDK 654
                K PGCSWIE++ ++H F+S DRSHP+   +Y+ +  +  L++E       N    
Sbjct: 578 LRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALH 637

Query: 655 EMDE 658
           +MDE
Sbjct: 638 DMDE 641



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 166/342 (48%), Gaps = 32/342 (9%)

Query: 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           RL+   +    + C Q +  E+   +  F+   G   +   S+ ++    KCG V+DAR+
Sbjct: 3   RLNLGIYTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARK 62

Query: 219 VFDEVLCRDLVLWNVMV----------------------SCYALNCLGDG---------A 247
           +FD +  RD   WN M+                      SC   + L  G         A
Sbjct: 63  LFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEA 122

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F  M+ EG + + FT+ S++  C      + G+QIH   IK  FD +  V T LVDM
Sbjct: 123 LELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDM 182

Query: 308 YAKNGNIDDACRVFD-GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           YAK   I +A  +F+     +N V W  MV G+ QNGDG +A++  RDM       ++ T
Sbjct: 183 YAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFT 242

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
             SIL++CGS+S      QVH   +++G  A + + +AL++ YSKCG ++ A +   +++
Sbjct: 243 FPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETME 302

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
             D V+W S+I      GL +E++ +F  M    ++ D   +
Sbjct: 303 VDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 274/484 (56%), Gaps = 27/484 (5%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK--CGFV-------- 213
           +  + L++C       +G  LH+  ++ G   + F ++AL++LY K  C ++        
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 214 ---------EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AIAVFNLMRLEGMK 260
                    E  R+VFDE++ RD+V WN +V    L C  +G    A+     M  EG +
Sbjct: 112 DVPGSSTAFESVRKVFDEMIERDVVSWNTLV----LGCAEEGRHHEALGFVRKMCREGFR 167

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D FT S+++         K G ++HG   +  FD DV V +SL+DMYA     D + +V
Sbjct: 168 PDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKV 227

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD +  ++ + WN+++ G  QNG   EA+ + R MLQ    P  VT +S++  CG+L+  
Sbjct: 228 FDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASL 287

Query: 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
              +Q+HAY I  G +  + I ++LI+ Y KCG I+ A   F  +  PD+V+WT++I  Y
Sbjct: 288 RFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGY 347

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG ++E++ +FE+M     +P+ I FL VL+ACSH GLV +G +YF  M + Y I+P 
Sbjct: 348 ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPT 407

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
            EH+  L D LGR G L EAY+ ++ M I+P +      + AC+VH +  LA+  A+K++
Sbjct: 408 LEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIM 467

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           ELEP    ++ ++SN+Y++   W + A LR+ MR     K P CSWIE+  ++H FV+ D
Sbjct: 468 ELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHD 527

Query: 621 RSHP 624
           RSHP
Sbjct: 528 RSHP 531



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 216/439 (49%), Gaps = 47/439 (10%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK---------------- 112
           ALK  A  G    G  LH+  ++ G        N +L++Y K                  
Sbjct: 56  ALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPG 115

Query: 113 ---AFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNS 167
              AF+ + K+FDEM  R++V+WNTL+ G    G +     + R+M  +  R D  T ++
Sbjct: 116 SSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLST 175

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           +L    +  D++ G  +H F  + GF  + FV S+L+D+Y  C   + + +VFD +  RD
Sbjct: 176 VLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 235

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
            +LWN +++  A N   + A+ +F  M   G++    TFSSL+  CG L S + G+Q+H 
Sbjct: 236 HILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHA 295

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            VI   F+ +V +++SL+DMY K G I  A  +FD M++ +VVSW  M++G+  +G  RE
Sbjct: 296 YVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPARE 355

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN---- 403
           A+ L   M  G+  P+ +T  ++L++C            HA  +  G + F S+ N    
Sbjct: 356 ALVLFERMELGNAKPNHITFLAVLTACS-----------HAGLVDKGWKYFKSMSNHYGI 404

Query: 404 --------ALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFE 454
                   AL +   + G +  A      ++ +P    W++++ A   H  +  + EV +
Sbjct: 405 VPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAK 464

Query: 455 KMLSHAVRPDSIAFLEVLS 473
           K++   + P SI    VLS
Sbjct: 465 KIME--LEPRSIGSHVVLS 481



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 4/274 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L + A+   +++G ++H    + G  + + + + ++ +Y  C   D   K+FD + V
Sbjct: 174 STVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPV 233

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ + WN+L++G    G        FRRML   VR   +TF+SL+  C     +  G++L
Sbjct: 234 RDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQL 293

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           H++++  GF  N F+SS+L+D+Y KCG +  A  +FD++   D+V W  M+  YAL+   
Sbjct: 294 HAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPA 353

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA-TS 303
             A+ +F  M L   K ++ TF +++ +C   G    G +    +      +  L    +
Sbjct: 354 REALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAA 413

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMV 336
           L D   + G +D+A      M  K   S W+T++
Sbjct: 414 LADTLGRAGELDEAYNFISKMQIKPTASVWSTLL 447



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  + V      L+ GKQLH++++  G  + + + + ++ +Y KC        +FD+M 
Sbjct: 274 FSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS 333

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVG-R 182
             ++V+W  +I G    G        F RM L N + +HITF ++L AC  A  ++ G +
Sbjct: 334 SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWK 393

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
              S     G        +AL D  G+ G +++A
Sbjct: 394 YFKSMSNHYGIVPTLEHFAALADTLGRAGELDEA 427



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI---LSSCGSLSISCETRQVHA 388
           W   +      G   +AV L   M + S  P     AS+   L SC +L +S     +HA
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRM-RASAAPRSSVPASLPAALKSCAALGLSALGASLHA 74

Query: 389 YAIKNGVQAFLSIENALINAYSKCG------------SIAGALQCFGSVK-------EPD 429
            AI++G  A     NAL+N Y K               + G+   F SV+       E D
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD 134

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +V+W +++   A  G   E++    KM     RPDS     VL   +    V  GL
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGL 190


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 292/572 (51%), Gaps = 26/572 (4%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L   A  G LQ+G QLHS++ K G+ +   ++  +L +YVKC   +    +F+    
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNR 307

Query: 127 RNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
            N+V WN ++   G IN        F +M    +R +  T+  +LR C    +I++G ++
Sbjct: 308 TNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQI 367

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLG 244
           HS  +K GF  + +VS  L+D+Y K G++E ARRV + +  +D+V W  M++ Y  +   
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYC 427

Query: 245 DGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+A F  M+  G+  D    +S ++ C  + + + G QIH  V    +  DV +  +L
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNAL 487

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           V++YA+ G I +A   F+ +  K+ ++WN +V GF Q+G   EA+K+   M Q     + 
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
            T  S LS+  +L+   + +Q+HA  IK G      + NALI+ Y KCGS   A   F  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           + E + V+W +II + + HG   E+++ F++M                          EG
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDFFDQM------------------------KKEG 643

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544
           L YF  M   Y I P  +HY C+ D+ GR G L  A   +  MPI   +      + ACK
Sbjct: 644 LSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACK 703

Query: 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604
           VH +I + + AA+ LLELEP    +Y L+SN YA    W +  ++RKMMRD    K PG 
Sbjct: 704 VHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEPGR 763

Query: 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTV 636
           SWIE+   +H F   DR HP A  +Y  L  +
Sbjct: 764 SWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVI 795



 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 256/484 (52%), Gaps = 6/484 (1%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    K     QG+ +H+   K G C++  + N ++ +Y++C +F   E++F +M  
Sbjct: 147 SSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPH 206

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           R+ VT+NTLISG   C  G +    F  M    +  D +T +SLL AC    D++ G +L
Sbjct: 207 RDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA-LNCL 243
           HS++ K G   +  +  +L+DLY KCG VE A  +F+     ++VLWN+++  +  +N L
Sbjct: 267 HSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDL 326

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              +  +F  M+  G++ + FT+  ++ +C   G   LG QIH L +K  F+ D+ V+  
Sbjct: 327 AK-SFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K G ++ A RV + +  K+VVSW +M+ G+ Q+   ++A+   ++M +    PD
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPD 445

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
            + LAS +S C  +    +  Q+HA    +G    +SI NAL+N Y++CG I  A   F 
Sbjct: 446 NIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            ++  D +TW  ++  +A  GL +E+++VF +M    V+ +   F+  LSA ++   + +
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G +    +I   H   ++E    L  L G+ G   +A    + M  E    +    I +C
Sbjct: 566 GKQIHARVIKTGHSF-ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623

Query: 544 KVHG 547
             HG
Sbjct: 624 SQHG 627



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 5/441 (1%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN-- 141
           ++H+  +  GL     + N ++ +Y K        ++F+E+  R+ V+W  ++SG     
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 142 CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201
            G      +R+M    V       +S+L +C +A+    GR +H+   K GF    FV +
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGN 182

Query: 202 ALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261
           AL+ LY +CG    A RVF ++  RD V +N ++S +A    G+ A+ +F  M+  G+  
Sbjct: 183 ALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSP 242

Query: 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321
           D  T SSL+ +C +LG  + G Q+H  + K     D ++  SL+D+Y K G+++ A  +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 322 DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
           +     NVV WN ++V FGQ  D  ++ +L   M      P++ T   IL +C       
Sbjct: 303 NLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEID 362

Query: 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYA 441
              Q+H+ ++K G ++ + +   LI+ YSK G +  A +    +KE D+V+WTS+I  Y 
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422

Query: 442 FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR-YFNLMISDYHILPD 500
            H   K+++  F++M    + PD+I     +S C+    + +GL+ +  + +S Y    D
Sbjct: 423 QHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYS--GD 480

Query: 501 SEHYTCLTDLLGRVGLLVEAY 521
              +  L +L  R G + EA+
Sbjct: 481 VSIWNALVNLYARCGRIREAF 501



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 186/368 (50%), Gaps = 6/368 (1%)

Query: 160 LDHITFNSLLRACV-QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARR 218
           L  + F   LRAC       +V   +H+  +  G G +  V + L+DLY K G V  ARR
Sbjct: 39  LGPLDFACALRACRGNGRRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARR 98

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+E+  RD V W  M+S YA N LG+ A+ ++  M   G+    +  SS+++SC     
Sbjct: 99  VFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAEL 158

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
              GR +H    KQ F  +  V  +L+ +Y + G+   A RVF  M  ++ V++NT++ G
Sbjct: 159 FAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISG 218

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
             Q   G  A+++  +M      PD VT++S+L++C SL    +  Q+H+Y  K G+ + 
Sbjct: 219 HAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSD 278

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
             +E +L++ Y KCG +  AL  F      ++V W  I+ A+       +S E+F +M +
Sbjct: 279 YIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQT 338

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT--CLTDLLGRVGL 516
             +RP+   +  +L  C+  G +  G +  +L +       +S+ Y    L D+  + G 
Sbjct: 339 AGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGF---ESDMYVSGVLIDMYSKYGW 395

Query: 517 LVEAYDLL 524
           L +A  +L
Sbjct: 396 LEKARRVL 403



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 28/202 (13%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK 119
           H+  +F S AL  SA    ++QGKQ+H+ ++K G   +  + N ++ +Y KC +F+D + 
Sbjct: 545 HNVFTFVS-ALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADD 177
            F EM  RN V+WNT+I+     G  +    +F +M  + +      F S+      +D 
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMKKEGLSY----FKSM------SDK 653

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS 236
             +  R   +             + ++D++G+ G ++ A++  +E+ +  D ++W  ++S
Sbjct: 654 YGIRPRPDHY-------------ACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLS 700

Query: 237 -CYALNCLGDGAIAVFNLMRLE 257
            C     +  G +A  +L+ LE
Sbjct: 701 ACKVHKNIEVGELAAKHLLELE 722


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/532 (34%), Positives = 285/532 (53%), Gaps = 4/532 (0%)

Query: 129 IVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           I  WN L++     G  G     FR  L  + R D  TF   L AC +  D++    +  
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVFR-ALPSSARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
                G+G + FV SAL+ +Y +CG + DA RVFD +  +D V W+ MV+ +        
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +++ MR  G+  D      ++ +C   G++++G  +HG  ++    +DV++ATSLVD
Sbjct: 196 ALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVD 255

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           MYAKNG+ D A +VF  M  +N VSWN ++ GF QNG   EA+ L R+M      PD   
Sbjct: 256 MYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGA 315

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S L +C  +      + +H + ++  ++    +  A+++ YSKCGS+  A + F  + 
Sbjct: 316 LVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLS 374

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             DLV W ++I     HG   +++ +F+++    ++PD   F  +LSA SH GLV EG  
Sbjct: 375 SRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKF 434

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           +F+ MI+++ I P  +H  C+ DLL R GL+ EA ++LASM  EP      A +  C  +
Sbjct: 435 WFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNN 494

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
             + L +  A+K+LE +P      ALVSN+YA+ + W  V  +RK+M+D+   KVPG S 
Sbjct: 495 KKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSL 554

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           IE+ G  H FV  D+SHPQ   +  M+  +   M +         +  ++DE
Sbjct: 555 IEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDE 606



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 222/437 (50%), Gaps = 19/437 (4%)

Query: 47  SQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLH 106
           + LR    +  S     + ++ AL   A+ G L   + +       G    + + + +LH
Sbjct: 95  AALRVFRALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLH 154

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHIT 164
           VY +C A  D  ++FD M  ++ V W+T+++G ++ G  V     + RM    V  D + 
Sbjct: 155 VYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVV 214

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
              +++AC    +  +G  +H   L+ G  ++  ++++LVD+Y K G  + AR+VF  + 
Sbjct: 215 MVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMP 274

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R+ V WN ++S +A N   D A+ +F  M   G++ D     S + +C  +G  KLG+ 
Sbjct: 275 YRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKS 334

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           IHG ++++  +   ++ T+++DMY+K G+++ A ++F+ ++++++V WN M+   G +G 
Sbjct: 335 IHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGC 393

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNGVQAFL 399
           G +A+ L +++ +    PD  T AS+LS+     +  E      R +  + I+   +  +
Sbjct: 394 GHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCV 453

Query: 400 SIENALINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
            +    ++  ++ G +  A +   S+  EP +  W +++       L+ + +E+ E +  
Sbjct: 454 CV----VDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGC----LNNKKLELGETIAK 505

Query: 459 HAV--RPDSIAFLEVLS 473
             +  +P+ I  L ++S
Sbjct: 506 KILESQPEDIGVLALVS 522


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 306/563 (54%), Gaps = 4/563 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           GKQLH+ ++KL   + L  QN ++ +YV+     D  ++F  + ++++++W+++I+G   
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246

Query: 142 CGGNVTP--YFRRMLLDNV-RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            G       + + ML   V   +   F S L+AC      + G ++H   +K     N  
Sbjct: 247 LGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAI 306

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
              +L D+Y +CGF+  ARRVFD++   D   WNV+++  A N   D A++VF+ MR  G
Sbjct: 307 AGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG 366

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
              D  +  SL+ +     +   G QIH  +IK  F  D+ V  SL+ MY    ++    
Sbjct: 367 FIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCF 426

Query: 319 RVF-DGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
            +F D     + VSWNT++    Q+    E ++L + ML     PD +T+ ++L  C  +
Sbjct: 427 NLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 486

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           S      QVH Y++K G+     I+N LI+ Y+KCGS+  A + F S+   D+V+W+++I
Sbjct: 487 SSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLI 546

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
             YA  G  +E++ +F++M S  + P+ + F+ VL+ACSH GLV EGL+ +  M +++ I
Sbjct: 547 VGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGI 606

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EH +C+ DLL R G L EA   +  M +EP        + ACK  G++ LA+ AAE
Sbjct: 607 SPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAE 666

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
            +L+++P     + L+ +++AS   W + A LR  M+ +   K+PG SWIEI  +IH F 
Sbjct: 667 NILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFF 726

Query: 618 SSDRSHPQAVHMYAMLCTVFGLM 640
           + D  HP+   +Y +L  ++  M
Sbjct: 727 AEDIFHPERDDIYTVLHNIWSQM 749



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 202/401 (50%), Gaps = 4/401 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L QG+++H HI+         L N +L +Y KC +  D  ++FD M  RN+V++ ++I+G
Sbjct: 83  LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITG 142

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
               G        + +ML +++  D   F S+++AC  + D+ +G++LH+ ++K+    +
Sbjct: 143 YSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSH 202

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
               +AL+ +Y +   + DA RVF  +  +DL+ W+ +++ ++       A++    M  
Sbjct: 203 LIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLS 262

Query: 257 EGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            G+   + + F S + +C +L     G QIHGL IK     + +   SL DMYA+ G ++
Sbjct: 263 FGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLN 322

Query: 316 DACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375
            A RVFD +   +  SWN ++ G   NG   EAV +   M    F PD ++L S+L +  
Sbjct: 323 SARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQT 382

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWT 434
                 +  Q+H+Y IK G  A L++ N+L+  Y+ C  +      F   +   D V+W 
Sbjct: 383 KPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWN 442

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
           +I+ A   H    E + +F+ ML     PD I    +L  C
Sbjct: 443 TILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGC 483



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 179/330 (54%), Gaps = 1/330 (0%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+ SL+ AC  +  +  GR++H  IL      +  +++ ++ +YGKCG + DAR VFD +
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R+LV +  +++ Y+ N  G  AI ++  M  E +  D F F S++ +C +     LG+
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+H  VIK      ++   +L+ MY +   + DA RVF G+  K+++SW++++ GF Q G
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248

Query: 344 DGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
              EA+  L++ML  G F P+E    S L +C SL       Q+H   IK+ +       
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            +L + Y++CG +  A + F  ++ PD  +W  II   A +G + E++ VF +M S    
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           PD+I+   +L A +    +S+G++  + +I
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYII 398



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 192/396 (48%), Gaps = 17/396 (4%)

Query: 60  HSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL------HVYVKCKA 113
           H     +  +LK  +       G Q+H      GLC K  L    +       +Y +C  
Sbjct: 267 HPNEYIFGSSLKACSSLLRPDYGSQIH------GLCIKSELAGNAIAGCSLCDMYARCGF 320

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRA 171
            +   ++FD++   +  +WN +I+G+ N G        F +M       D I+  SLL A
Sbjct: 321 LNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCA 380

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVL 230
             +   +  G ++HS+I+K GF  +  V ++L+ +Y  C  +     +F++     D V 
Sbjct: 381 QTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVS 440

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN +++    +      + +F LM +   + D+ T  +L+  C  + S KLG Q+H   +
Sbjct: 441 WNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSL 500

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
           K     +  +   L+DMYAK G++  A R+FD M  ++VVSW+T++VG+ Q+G G EA+ 
Sbjct: 501 KTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALI 560

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA-YAIKNGVQAFLSIENALINAY 409
           L ++M      P+ VT   +L++C  + +  E  +++A    ++G+       + +++  
Sbjct: 561 LFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLL 620

Query: 410 SKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHG 444
           ++ G +  A +    +K EPD+V W +++ A    G
Sbjct: 621 ARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQG 656



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G Q+H + +K GL  +  ++N ++ +Y KC +     ++FD M  R++V+W+TLI G
Sbjct: 489 LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVG 548

Query: 139 IINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
                 G      F+ M    +  +H+TF  +L AC     +E G +L++  ++   G++
Sbjct: 549 YAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYA-TMQTEHGIS 607

Query: 197 CFVS--SALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                 S +VDL  + G + +A R  DE+ L  D+V+W  ++S     C   G + +   
Sbjct: 608 PTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSA----CKTQGNVHLAQK 663

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSS 279
                +K D F  ++ V  C    SS
Sbjct: 664 AAENILKIDPFNSTAHVLLCSMHASS 689


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 205/720 (28%), Positives = 338/720 (46%), Gaps = 116/720 (16%)

Query: 48  QLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHV 107
           +L   G + +S       YS ALK   +   +  G ++H  ++K G    + L+  +++ 
Sbjct: 123 ELHGKGVVFDS-----EVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 177

Query: 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV----TPYFRRMLLDNVRLDHI 163
           Y +C   +   ++F EM     + WN  I  I+N            FR+M    ++ +  
Sbjct: 178 YGRCWGLEKANQVFHEMPNPEALLWNEAI--ILNLQSEKLQKGVELFRKMQFSFLKAETA 235

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T   +L+AC +   +   +++H ++ + G   +  + + L+ +Y K G +E ARRVFD +
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 224 LCRDLVLWNVMVSCYA--------------------------LNCLGDG---------AI 248
             R+   WN M+S YA                           NCL  G          +
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 355

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +   M+ EG K +  + +S++ +   LG   +G++ HG V++  FD DV V TSL+DMY
Sbjct: 356 NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 415

Query: 309 A---------------KNGNI----------------DDACRVFDGMTAK---------- 327
                           KN NI                +DA R+ + M  +          
Sbjct: 416 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 475

Query: 328 -----------------------------NVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
                                        NVVSW  ++ G  Q G+ R+++K    M Q 
Sbjct: 476 GMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQE 535

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418
              P+  ++  +L +C SLS+  + +++H  +I+NG    + +  ALI+ YSK  S+  A
Sbjct: 536 GVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNA 595

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478
            + F  ++   L +W  +I  +A  GL KE+I VF +M    V PD+I F  +LSAC + 
Sbjct: 596 HKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 655

Query: 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA 538
           GL+ EG +YF+ MI+DY I+P  EHY C+ DLLGR G L EA+DL+ +MP++P +   GA
Sbjct: 656 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 715

Query: 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598
            +G+C++H ++  A+ AA+ L +LEP+   NY L+ N+Y+    W D+  LR++M     
Sbjct: 716 LLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 775

Query: 599 HKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
                 SWI+I   +H F S ++ HP A  +Y  L  +   M++       N + + MDE
Sbjct: 776 RNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDE 835



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/567 (22%), Positives = 239/567 (42%), Gaps = 62/567 (10%)

Query: 18  PLSYLTPALYQNQTTTITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFG 77
           PL +L P L QN  T         +  L S   +   +  S  S    ++Q +K+  K+ 
Sbjct: 6   PLHHLHPPL-QNPLTHKPIKTPTSKLYLDSHSSDDSNVITSLTSVKMMHAQMIKLPQKWN 64

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137
                K L S  +  G        +  +  YV                 RN + WN+ + 
Sbjct: 65  PDAAAKNLISSYLGFG-----DFWSAAMVFYVGLP--------------RNYLKWNSFVE 105

Query: 138 GIINCGGN---VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFG 194
              +  G+   V   F+ +    V  D   ++  L+ C +  DI +G  +H  ++K GF 
Sbjct: 106 EFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFD 165

Query: 195 LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254
           L+ ++  AL++ YG+C  +E A +VF E+   + +LWN  +     +      + +F  M
Sbjct: 166 LDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM 225

Query: 255 RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           +   +K +  T   ++ +CG +G+    +QIHG V +   D DV +   L+ MY+KNG +
Sbjct: 226 QFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKL 285

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQ--------------------------------- 341
           + A RVFD M  +N  SWN+M+  +                                   
Sbjct: 286 ELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGH 345

Query: 342 --NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             +G   E + +L+ M    F P+  ++ S+L +   L      ++ H Y ++NG    +
Sbjct: 346 FLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDV 405

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +  +LI+ Y K  S+  A   F ++K  ++  W S++  Y+F G+ ++++ +  +M   
Sbjct: 406 YVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKE 465

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            ++PD + +  ++S  +  G   E L   +       + P+   +T L     + G   +
Sbjct: 466 GIKPDLVTWNGMISGYAMWGCGKEALAVLH-QTKSLGLTPNVVSWTALISGSSQAGNNRD 524

Query: 520 AYDLLASMPIE---PRSDTLGAFIGAC 543
           +    A M  E   P S ++   + AC
Sbjct: 525 SLKFFAQMQQEGVMPNSASITCLLRAC 551


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/542 (32%), Positives = 297/542 (54%), Gaps = 36/542 (6%)

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
           Y  R+   + RL    +++L+ AC++   +E+G+R+H+      F     +S+ L+ +Y 
Sbjct: 54  YLHRIPQPSPRL----YSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYA 109

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYA----------------------LNCLGDG 246
           KCG + DA+ +FDE+  +DL  WN M+S YA                       N +  G
Sbjct: 110 KCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISG 169

Query: 247 ---------AIAVFNLMRL-EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296
                    A+ +F +M+  E    + FT SS + +   + S + G++IHG +I+   +L
Sbjct: 170 YVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLEL 229

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D +V T+L+D+Y K G++++A  +FD M  K++VSW TM+    ++G  +E   L RD++
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM 289

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P+E T A +L++C  L+     ++VH Y  + G   F    +AL++ YSKCG+  
Sbjct: 290 GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTE 349

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A + F  +  PDLV+WTS+I  YA +G    +++ FE +L    +PD I F+ VLSAC+
Sbjct: 350 TARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV  GL YF+ +   + ++  ++HY C+ DLL R G   EA +++ +MP++P     
Sbjct: 410 HAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLW 469

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
            + +G C++HG+I LA+ AA+ L ELEP  P  Y  +SN+YA+   W +  ++R  M + 
Sbjct: 470 ASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNR 529

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEM 656
              K PG SWIEI  ++H F+  D SHP+   ++  L  +   M+E       N +  ++
Sbjct: 530 GIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDV 589

Query: 657 DE 658
           +E
Sbjct: 590 EE 591



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 237/482 (49%), Gaps = 55/482 (11%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA- 113
           +H     +   YS  +    +   L+ GK++H+H         + + N+++H+Y KC + 
Sbjct: 55  LHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSL 114

Query: 114 ------FDDM------------------------EKLFDEMRVRNIVTWNTLISGIINCG 143
                 FD++                         KLFDEM  R+  +WN +ISG ++ G
Sbjct: 115 VDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQG 174

Query: 144 GNVTPY-FRRMLLDN--VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
             +      RM+ +N     +  T +S L A      +  G+ +H ++++ G  L+  V 
Sbjct: 175 WYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVW 234

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG----AIAVFNLMRL 256
           +AL+DLYGKCG + +AR +FD++  +D+V W  M+      C  DG      ++F  +  
Sbjct: 235 TALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIH----RCFEDGRKKEGFSLFRDLMG 290

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G++ + +TF+ ++N+C  L + ++G+++HG + +  +D     A++LV +Y+K GN + 
Sbjct: 291 SGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTET 350

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC-- 374
           A RVF+ M   ++VSW +++VG+ QNG    A++    +L+    PDE+T   +LS+C  
Sbjct: 351 ARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTH 410

Query: 375 -GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVT 432
            G + I  E    H+   K+G+         +I+  ++ G    A     ++  +PD   
Sbjct: 411 AGLVDIGLEY--FHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFL 468

Query: 433 WTSIIGAYAFHGLSKESIEVFEKMLS--HAVRPDSIA-FLEVLSACSHGGLVSEGLRYFN 489
           W S++G    HG    +IE+ E+       + P++ A ++ + +  ++ GL +E  +  N
Sbjct: 469 WASLLGGCRIHG----NIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRN 524

Query: 490 LM 491
            M
Sbjct: 525 DM 526


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 297/509 (58%), Gaps = 8/509 (1%)

Query: 144 GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
           GN+T     + L+     H T+  L+ +C   + +   +R+H  +L+ GF  + F+++ L
Sbjct: 53  GNLTQALELLSLEPNPAQH-TYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKL 111

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +++Y     +++AR+VFD+   R + ++N +    +L   G+  + ++  M   G+  D 
Sbjct: 112 INMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDR 171

Query: 264 FTFSSLVNSCGT----LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
           FT++ ++ +C      +     GR+IH  +++  +D  V + T+LVDMYAK G + +A  
Sbjct: 172 FTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASC 231

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML--QGSFCPDEVTLASILSSCGSL 377
           VF+ M  KNVVSW+ M+  + +NG   EA++L R+++      CP+ VT+ S+L +C +L
Sbjct: 232 VFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAAL 291

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
           +   + R +H Y ++ G+ + L + +AL+  Y++CG +    + F  + + D+V+W S+I
Sbjct: 292 AALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLI 351

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
            +Y  HG  K++I +FE+M  + V P  I+F+ VL ACSH GLV EG   FN M   + I
Sbjct: 352 SSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGI 411

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557
            P  EHY C+ DLLGR   L EA  ++ +M IEP     G+ +G+C++H ++ LA+ A+ 
Sbjct: 412 CPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASI 471

Query: 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617
           +L +LEP+   NY L++++YA    W  V R++K++      KVPG SWIE+  +I++FV
Sbjct: 472 RLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFV 531

Query: 618 SSDRSHPQAVHMYAMLCTV-FGLMEENNV 645
           S D  +P+   ++A+L  +   L EE  V
Sbjct: 532 SVDEVNPRMEQLHALLVKLSMELKEEGYV 560



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 196/375 (52%), Gaps = 10/375 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L   +++H H+++ G      L  +++++Y    + D+  K+FD+ R R I  +N L   
Sbjct: 86  LLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRA 145

Query: 139 --IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQAD----DIEVGRRLHSFILKVG 192
             +   G  V   +RRM    +  D  T+  +L+ACV ++     +  GR +H+ IL+ G
Sbjct: 146 LSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHG 205

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           +     + + LVD+Y K G V +A  VF+++  +++V W+ M++CYA N     A+ +F 
Sbjct: 206 YDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFR 265

Query: 253 LMRLEGMK--GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
            + LE      +  T  S++ +C  L + + GR IHG ++++  D  + V ++LV MYA+
Sbjct: 266 ELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYAR 325

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G ++   RVFD M  ++VVSWN+++  +G +G G++A+ +  +M      P  ++  S+
Sbjct: 326 CGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSV 385

Query: 371 LSSCGSLSISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EP 428
           L +C    +  E + + ++  + +G+   +     +++   +   +  A +   +++ EP
Sbjct: 386 LGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEP 445

Query: 429 DLVTWTSIIGAYAFH 443
               W S++G+   H
Sbjct: 446 GPKVWGSLLGSCRIH 460



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 154/310 (49%), Gaps = 13/310 (4%)

Query: 28  QNQTTTITNA-------QKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKF-GFL 79
           +N+T  + NA         H   VL+   R +     S    +++  +A   S  F   L
Sbjct: 132 RNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLL 191

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
            +G+++H+HI++ G    + +   ++ +Y K     +   +F++M V+N+V+W+ +I+  
Sbjct: 192 NKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACY 251

Query: 140 INCGG--NVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL 195
              G        FR ++L+   L  + +T  S+L+AC     +E GR +H +IL+ G   
Sbjct: 252 AKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDS 311

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
              V SALV +Y +CG +E  +RVFD++  RD+V WN ++S Y ++  G  AI +F  M 
Sbjct: 312 ILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMT 371

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
             G++    +F S++ +C   G    G+ + + + +       V     +VD+  +   +
Sbjct: 372 YNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRL 431

Query: 315 DDACRVFDGM 324
           ++A ++ + M
Sbjct: 432 EEAAKIIENM 441


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 205/648 (31%), Positives = 333/648 (51%), Gaps = 64/648 (9%)

Query: 3   SRCPAPPIFTVHFKRPL--SYLTPALY--QNQTTTITNAQKHDRSVL-SSQLRNSGTIHE 57
           +R  APP    H+   L  S L P ++   +     ++ Q H + VL   Q++  G    
Sbjct: 44  TRLRAPP----HYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGV--- 96

Query: 58  STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDM 117
                 +F    L  SA  G    G   H+H++KLG  +   ++N V+ +Y +       
Sbjct: 97  ---RPDAFVYPILIKSAGTG----GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHA 149

Query: 118 EKLFDEM--RVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
            K+FDE+    R +  WN ++SG          Y++             + S  +A    
Sbjct: 150 RKVFDEIPDYERKVADWNAMVSG----------YWK-------------WESEGQA---- 182

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
                      ++  V    N    +A+V  Y K   +E ARR FD +  R +V WN M+
Sbjct: 183 ----------QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAML 232

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           S YA N L + A+ +F+ M   G++ D  T+ +++++C + G   L   +   + ++   
Sbjct: 233 SGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQ 292

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355
           L+  V T+L+DMYAK G++D A ++F+ M  +NVV+WN+M+ G+ QNG    A++L ++M
Sbjct: 293 LNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 352

Query: 356 LQGS-FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS 414
           +      PDEVT+ S++S+CG L        V  +  +N ++  +S  NA+I  YS+CGS
Sbjct: 353 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 412

Query: 415 IAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474
           +  A + F  +   D+V++ ++I  +A HG   E+I +   M    + PD + F+ VL+A
Sbjct: 413 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 472

Query: 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534
           CSH GL+ EG + F   I D    P  +HY C+ DLLGRVG L +A   +  MP+EP + 
Sbjct: 473 CSHAGLLEEGRKVFE-SIKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAG 527

Query: 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594
             G+ + A ++H  + L + AA KL ELEP    N+ L+SN+YAS   W DV R+R+ M+
Sbjct: 528 VYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMK 587

Query: 595 DNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
                K  G SW+E  G++H F+ +DRSH ++  +Y +L  +   M E
Sbjct: 588 KGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMRE 635


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/587 (32%), Positives = 300/587 (51%), Gaps = 68/587 (11%)

Query: 140 INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
           +N  G+V   F  ML   +  D     ++++ C     ++ G+++H F L  G GL+  V
Sbjct: 52  LNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVV 111

Query: 200 SSALVDLYGKCGFVEDARRVFDEV-----------------------------LCRDL-- 228
            S+L+ +Y +   ++DAR VFD++                               RDL  
Sbjct: 112 LSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGV 171

Query: 229 ----VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
               V WN M+S +  +     A+ +F  M LEG+K D  + SS++ + G L    +G Q
Sbjct: 172 ELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQ 231

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAK-------------------------------NGN 313
           IH  VIKQ    D  V ++L+DMY K                               NG 
Sbjct: 232 IHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGL 291

Query: 314 IDDACRVFDGMTAK--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           +D+A  VF        NVVSW +M+    QNG   EA++L R+M      P+ VT+  +L
Sbjct: 292 VDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLL 351

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
            +CG+++     +  H ++++NG+   + + +ALI+ Y+KCG +  +  CF  +   +LV
Sbjct: 352 PACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLV 411

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +W S++  YA HG + E+I +FE M     +PD ++F  VLSAC+ GGL  EG  YF+ M
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSM 471

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
             ++ +    EHY+C+  LLGR G L EAY ++  MP EP S   GA + +C+VH  + L
Sbjct: 472 SRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDL 531

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
            + AA+++ ELEP  P NY L+SN+YAS+  W +V  +R MMR     K PG SWIEI  
Sbjct: 532 GEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKN 591

Query: 612 EIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           ++H  ++ D SHPQ   +   L  +   M+++    H + + ++++E
Sbjct: 592 KVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEE 638



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 198/446 (44%), Gaps = 72/446 (16%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM----- 124
           +K  A    LQ GKQ+H   +  GL     + + +LH+YV+     D   +FD++     
Sbjct: 81  IKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGV 140

Query: 125 --------------RVR----------------NIVTWNTLISGIINCGG--NVTPYFRR 152
                         RV+                N+V+WN +ISG    G   +    F+ 
Sbjct: 141 VTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQN 200

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC-- 210
           M L+ ++ D  + +S+L A    D   +G ++H +++K G G + FV SAL+D+YGKC  
Sbjct: 201 MHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCAC 260

Query: 211 -----------------------------GFVEDARRVFDEVLCRDL--VLWNVMVSCYA 239
                                        G V++A  VF +    DL  V W  M++  +
Sbjct: 261 ASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCS 320

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N     A+ +F  M++EG+K +  T   L+ +CG + +   G+  H   ++     DV 
Sbjct: 321 QNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVY 380

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           V ++L+DMYAK G +  +   FD M  +N+VSWN+++ G+  +G   EA+ +   M +  
Sbjct: 381 VGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCG 440

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKN-GVQAFLSIENALINAYSKCGSIAGA 418
             PD V+   +LS+C    ++ E         +N GV+A +   + ++    + G +  A
Sbjct: 441 QKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEA 500

Query: 419 LQCFGSVK-EPDLVTWTSIIGAYAFH 443
                 +  EPD   W +++ +   H
Sbjct: 501 YAMIKQMPFEPDSCVWGALLSSCRVH 526



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 6/200 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L  GK  H   ++ G+ N + + + ++ +Y KC         FD M  RN+V+WN+L++G
Sbjct: 360 LLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAG 419

Query: 139 IINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR-RLHSFILKVGFGL 195
               G        F  M     + DH++F  +L AC Q    E G     S     G   
Sbjct: 420 YAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEA 479

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLGDGAIAVFNL 253
                S +V L G+ G +E+A  +  ++    D  +W  ++ SC   N +  G IA   +
Sbjct: 480 RMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRV 539

Query: 254 MRLEGMK-GDYFTFSSLVNS 272
             LE    G+Y   S++  S
Sbjct: 540 FELEPRNPGNYILLSNIYAS 559


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/528 (33%), Positives = 303/528 (57%), Gaps = 9/528 (1%)

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRL-DHITFNSLLR 170
            D    +FD    +N   WNT+I   +  NC       F + L     + D +T  S+L 
Sbjct: 274 MDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLT 333

Query: 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230
           A  Q   I++  + H+F++K   G    + +A++ +Y +C  V+ + +VFD++L RD V 
Sbjct: 334 AVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVS 393

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           WN ++S +  N   + A+ +   M+ +    D  T ++L+++   L +  +G+Q H  +I
Sbjct: 394 WNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLI 453

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVGFGQNGDGREA 348
           ++    + +  + L+DMYAK+G+I  A  +F+    + ++  +WN ++ G+ QNG   +A
Sbjct: 454 RRGIQFEGM-ESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKA 512

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + LL+ ML  +  P+ VTLASIL +C S+      RQ+H ++I+  ++  + +  +L + 
Sbjct: 513 ILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDT 572

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           YSKCG+I+ A   F    E + VT+T+++  Y  HG+ K ++ +++ ML   +RPD++ F
Sbjct: 573 YSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTF 632

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + +LSAC++ GLV EGL+ F  M   + I P  EHY C+ D+LGRVG +VEAY+ +  + 
Sbjct: 633 VAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLG 692

Query: 529 IEPRS-DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN--YALVSNVYASERCWFD 585
            +  + +  G+ +G+C+ HG   L K  A+KLL +   K +   + L+SN+YA E  W  
Sbjct: 693 EDANTMEIWGSLLGSCRNHGHFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWEK 752

Query: 586 VARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           V R+RK M++   HK  GCSW+EIAG ++ FVS D  HPQ+  +Y ML
Sbjct: 753 VDRVRKQMKEKGLHKETGCSWVEIAGFVNCFVSRDEKHPQSSEIYYML 800



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 222/483 (45%), Gaps = 54/483 (11%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR-------LDHITFNSLLRAC 172
           L D +   + V WN++I G I C  N  P+   +L   +R        D  TF+S L+AC
Sbjct: 71  LLDSLPRPSTVVWNSVIIGFI-C--NNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKAC 127

Query: 173 VQADDIEVGRRLHSFILK----VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL 228
               DI  G+ +HS  L+       G +  V ++L+++Y  C   E A  VFD +  R++
Sbjct: 128 ALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQH-EYALNVFDVMRRRNV 186

Query: 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
           V WN ++  +        A+  F  M  + +     TF +L  +   LG S+  +  +G 
Sbjct: 187 VAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGF 246

Query: 289 VIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346
           + K    +  DV V +S + M++  G +D A  VFD    KN   WNTM+V + QN    
Sbjct: 247 MRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPV 306

Query: 347 EAVKLLRDMLQGS--FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
           EA+ +    L+     C D+VTL S+L++   L       Q HA+ IK+   + + I NA
Sbjct: 307 EAIDVFIQALESEEGVC-DDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNA 365

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           ++  YS+C  +  +L+ F  + E D V+W +II A+  +G  +E++ +  +M       D
Sbjct: 366 VMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLID 425

Query: 465 SIAFLEVLSACS-----------HGGLVSEGLRYFNL------------------MISDY 495
           S+    +LSA S           H  L+  G+++  +                  ++ + 
Sbjct: 426 SVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESYLIDMYAKSGSIRTAELLFEQ 485

Query: 496 HILPDSEHYTCLTDLLGRV--GLLVEAYDLLASMPIE---PRSDTLGAFIGACKVHGSIG 550
           +   D +  T    + G    GL  +A  LL  M ++   P + TL + + AC   GS+G
Sbjct: 486 NCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMG 545

Query: 551 LAK 553
           LA+
Sbjct: 546 LAR 548



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 10/271 (3%)

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM--KGDYFTFSSLVNSC 273
           A  + D +     V+WN ++  +  N L   A+ ++  MR        D +TFSS + +C
Sbjct: 68  ALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKAC 127

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDV----LVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
                   G+ IH   ++   + +     +V  SL++MYA   + + A  VFD M  +NV
Sbjct: 128 ALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQH-EYALNVFDVMRRRNV 186

Query: 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389
           V+WNT+++ F +     +AV+   +M+  S  P  VT  ++  +   L  S   +  + +
Sbjct: 187 VAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGF 246

Query: 390 AIKNGVQAF--LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSK 447
             K G Q    + + ++ I  +S  G +  A   F      +   W ++I AY  +    
Sbjct: 247 MRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPV 306

Query: 448 ESIEVFEKML-SHAVRPDSIAFLEVLSACSH 477
           E+I+VF + L S     D +  L VL+A S 
Sbjct: 307 EAIDVFIQALESEEGVCDDVTLLSVLTAVSQ 337



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP--DEVTL 367
           + G    A  + D +   + V WN++++GF  N    +A+ L   M   S C   D  T 
Sbjct: 61  REGQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTF 120

Query: 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLS----IENALINAYSKCGSIAGALQCFG 423
           +S L +C         + +H++ +++           + N+L+N Y+ C     AL  F 
Sbjct: 121 SSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQH-EYALNVFD 179

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            ++  ++V W ++I ++       +++E F  M++ +V P  + F+ +  A S  G
Sbjct: 180 VMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLG 235



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 45/266 (16%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   +  G +   +QLH   ++  L   + +   +   Y KC A    E +F     +N 
Sbjct: 535 LPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNS 594

Query: 130 VTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           VT+ T++   G    G      +  ML   +R D +TF ++L AC  +  ++ G ++   
Sbjct: 595 VTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIFES 654

Query: 188 ILKV-----GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           + KV          C V+    D+ G+ G V +A                       +  
Sbjct: 655 MEKVHKIKPSIEHYCCVA----DMLGRVGRVVEAYEF--------------------VKG 690

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL-VA 301
           LG+ A    N M + G         SL+ SC   G  +LG+ +   ++    D  +    
Sbjct: 691 LGEDA----NTMEIWG---------SLLGSCRNHGHFELGKAVAKKLLNMGMDKRMAGYH 737

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAK 327
             L ++YA+ G  +   RV   M  K
Sbjct: 738 VLLSNIYAEEGEWEKVDRVRKQMKEK 763


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 180/567 (31%), Positives = 307/567 (54%), Gaps = 8/567 (1%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           +K   L+ G  LH+ ++K G  + + + N VL++Y KC       ++FDEM  +N+V+W+
Sbjct: 14  SKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWS 73

Query: 134 TLISGIINCGG---NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILK 190
            +ISG    G     +  Y +  L+ N       F S++ AC     + +G+++HS  LK
Sbjct: 74  AMISGYDQAGEPQMAIDLYSQMFLVPN----EYVFASVISACASLSAVTLGQKIHSRSLK 129

Query: 191 VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250
            G+    FVS++L+ +Y KC    DA  VF      + V +N +++ +  N   +  +  
Sbjct: 130 FGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEF 189

Query: 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           F LMR +G+  D F F  ++  C T  + K G ++H   +K + D    +   ++ MY++
Sbjct: 190 FKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSE 249

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLAS 369
              I +A + F  +  K+V+SWNT++       D  + +++ + M + +   PD+ T  S
Sbjct: 250 LNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTS 309

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
            L++C  L+     +Q+HA+ ++  +   L + NAL+N Y+KCG I  A   F  +   +
Sbjct: 310 ALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHN 369

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           LV+W +II  +  HGL + ++E+FE+M +  +RPDS+ F+ +L+AC+H GLV +G  YFN
Sbjct: 370 LVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFN 429

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            M   Y I PD EH++CL D+LGR G L EA + +   P       L + + A ++HG +
Sbjct: 430 SMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDV 489

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            + +  A+ LL+L+P     Y L+SN+YAS+  W  VA  RK ++ +   K PG S IE+
Sbjct: 490 VIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEV 549

Query: 610 AGEIHTFVSSDRSHPQAVHMYAMLCTV 636
            G +  F   D +H +   +  +L T+
Sbjct: 550 NGSVEKFTIGDFTHLRIKEIKGILKTL 576



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 178/365 (48%), Gaps = 5/365 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T +SLL  C +   +  G  LH+ +LK G   + F+S+ ++++Y KCG    AR+VFDE+
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             ++LV W+ M+S Y        AI +++ M L     + + F+S++++C +L +  LG+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSAVTLGQ 121

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           +IH   +K  ++    V+ SL+ MY K     DA  VF      N VS+N ++ GF +N 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
                ++  + M Q    PD      +L  C +        ++H   +K  + +   I N
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VR 462
            +I  YS+   I  A + F  ++E D+++W ++I A +      + + VF+ M     VR
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVR 301

Query: 463 PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522
           PD   F   L+AC+    +S G +  +  +    +  D      L ++  + G +  AYD
Sbjct: 302 PDDFTFTSALAACAGLASMSHG-KQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYD 360

Query: 523 LLASM 527
           + + M
Sbjct: 361 IFSKM 365



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 156/313 (49%), Gaps = 5/313 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  +   A    +  G+++HS  +K G  +   + N ++ +Y+KC    D   +F    
Sbjct: 104 FASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTP 163

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             N V++N LI+G +          +F+ M    +  D   F  +L  C   ++++ G  
Sbjct: 164 EPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAE 223

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV-SCYALNC 242
           LH   +K+      F+ + ++ +Y +   +++A + F  +  +D++ WN ++ +C   + 
Sbjct: 224 LHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDD 283

Query: 243 LGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
              G + VF  M  E  ++ D FTF+S + +C  L S   G+QIH  +++     D+ V 
Sbjct: 284 HAKG-LRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVG 342

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            +LV+MYAK G I  A  +F  M   N+VSWNT++ GFG +G G  AV+L   M      
Sbjct: 343 NALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIR 402

Query: 362 PDEVTLASILSSC 374
           PD VT   +L++C
Sbjct: 403 PDSVTFIGLLTAC 415



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL   A    +  GKQ+H+H+M+  L   L + N ++++Y KC        +F +M 
Sbjct: 307 FTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMV 366

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR- 182
             N+V+WNT+I+G  N   G      F +M    +R D +TF  LL AC  A  ++ G+ 
Sbjct: 367 HHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQL 426

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
             +S     G   +    S L+D+ G+ G + +A     E   R    WN
Sbjct: 427 YFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEA-----EEYMRKFPFWN 471


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 317/581 (54%), Gaps = 11/581 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNK---LSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           LK SA    L+ GK +H+ ++     +K   ++  N ++++Y KC       KLFD M  
Sbjct: 30  LKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQ 89

Query: 127 RNIVTWNTLISGIINCGG--NVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRR 183
           RN+V+W+ L+ G ++ G    V   FR ++ LD+   +   F  +L  C  +  ++ G++
Sbjct: 90  RNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQ 149

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN-C 242
            H ++LK G  L+ +V +AL+ +Y +C  V+ A ++ D V   D+  +N ++S    + C
Sbjct: 150 CHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGC 209

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
            G+ A  V   M  E +  D  T+ S++  C  +   +LG QIH  ++K     DV V++
Sbjct: 210 RGEAA-QVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSS 268

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+D Y K G + +A + FDG+  +NVV+W  ++  + QNG   E + L   M      P
Sbjct: 269 TLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRP 328

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           +E T A +L++C SL        +H   + +G +  L + NALIN YSK G+I  +   F
Sbjct: 329 NEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVF 388

Query: 423 GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482
            ++   D++TW ++I  Y+ HGL K+++ VF+ M+S    P+ + F+ VLSAC H  LV 
Sbjct: 389 SNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQ 448

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG--AFI 540
           EG  YF+ ++  + + P  EHYTC+  LLGR GLL EA + + +   + + D +     +
Sbjct: 449 EGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKT-TTQVKWDVVAWRTLL 507

Query: 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600
            AC +H +  L K   E +++++P     Y L+SN++A  R W  V ++RK+M++    K
Sbjct: 508 NACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKK 567

Query: 601 VPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
            PG SW++I    H FVS   +HP++  ++  +  +  +++
Sbjct: 568 EPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIK 608



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 140/277 (50%), Gaps = 7/277 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   L + A+   LQ G Q+H+ ++K GL   + + + ++  Y KC    +  K FD +R
Sbjct: 232 YVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLR 291

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V W  +++  +  G        F +M L++ R +  TF  LL AC     +  G  
Sbjct: 292 DRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDL 351

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  I+  GF  +  V +AL+++Y K G ++ +  VF  ++ RD++ WN M+  Y+ + L
Sbjct: 352 LHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGL 411

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA-- 301
           G  A+ VF  M   G   +Y TF  ++++C  L   + G      ++K+ FD++  +   
Sbjct: 412 GKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKK-FDVEPGLEHY 470

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAK--NVVSWNTMV 336
           T +V +  + G +D+A       T    +VV+W T++
Sbjct: 471 TCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLL 507


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/584 (32%), Positives = 300/584 (51%), Gaps = 30/584 (5%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L   +QLH+H +K    +   +   ++ VY K  +  D  + F  +    + T N ++ G
Sbjct: 261 LSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVG 320

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
           ++  G        F+ M    +    ++ + +  AC +                 GF ++
Sbjct: 321 LVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVK---------------GFDVD 365

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             V +A++DLYGKC  + +A  VF E+  RD V WN +++    N   +  I   N M  
Sbjct: 366 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLR 425

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            GM+ D FT+ S++ +C  L S + G  +HG  IK    LD  V++++VDMY K G I +
Sbjct: 426 SGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITE 485

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A ++ D +  + +VSWN+++ GF  N    EA K   +ML     PD  T A++L SC +
Sbjct: 486 ALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCAN 545

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+     +Q+H   IK  +     I + L++ Y+KCG++  +   F  V++ D V+W ++
Sbjct: 546 LATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAM 605

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG   E++E+FE+     V P+   F+ VL ACSH GL+ +G RYF+LM S Y 
Sbjct: 606 ICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYK 665

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           + P  EH+ C+           EA   + SMP+E  +      +  CK+   + +A+ AA
Sbjct: 666 LEPQLEHFACMGPQ--------EALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAA 717

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
             +L L+P     Y L+SNVYA    W DV+R R++MR     K PGCSWIE+  E+H F
Sbjct: 718 SNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGF 777

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH--CNVLDKEMDE 658
           +  ++ HP++  +Y ML     L+ E  +SG+   + L  E+DE
Sbjct: 778 LVGEKVHPRSREVYEMLNN---LICEMKLSGYEPASALFAEVDE 818



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 134/523 (25%), Positives = 225/523 (43%), Gaps = 70/523 (13%)

Query: 36  NAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGF--LQQGKQLHSHIMKLG 93
            A  H    LS       T  ++   A + +S   ++ A  G   L  G+  H+ ++  G
Sbjct: 2   TATGHITRSLSPGCPGRPTPAQAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSG 61

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN-------- 145
               + + N +L +Y +C        +FD M  R+ V+WNT+++   + G          
Sbjct: 62  FVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLC 121

Query: 146 VTP-------------YFRR-MLLDNVRL-----------DHITFNSLLRACVQADDIEV 180
           V P             Y +R M  D V L           D  T   LL+AC   DD+ +
Sbjct: 122 VMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLAL 181

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           G ++H+  +K G  ++    SALVD+YGKC  +EDA   F  +  R+ V W  ++     
Sbjct: 182 GVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVI----- 236

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLV 300
                 A  V N   + G++        L+  C  +      RQ+H   IK  F  D +V
Sbjct: 237 ------AGCVQNEQYMRGLE--------LLCRCKAITCLSTARQLHAHAIKNKFSSDRVV 282

Query: 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360
            T++VD+YAK  ++ DA R F G+    V + N M+VG  + G G EA++L + M +   
Sbjct: 283 GTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGI 342

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
               V+L+ + S+C  +                G    + + NA+++ Y KC ++  A  
Sbjct: 343 GFGVVSLSGVFSACAEV---------------KGFDVDVCVRNAILDLYGKCKALVEAYL 387

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            F  +++ D V+W +II A   +   +++I    +ML   +  D   +  VL AC+    
Sbjct: 388 VFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQS 447

Query: 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523
           +  GL      I     L D+   + + D+  + G++ EA  L
Sbjct: 448 LEYGLVVHGKAIKSGLGL-DAFVSSTVVDMYCKCGMITEALKL 489



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 177/422 (41%), Gaps = 78/422 (18%)

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA--DDIEVGRRLHSFILKVGFGLNCF 198
            C G  TP           L   TF+ + + C  A    +  G+  H+ +L  GF    F
Sbjct: 14  GCPGRPTP------AQAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMF 67

Query: 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL----- 253
           VS+ L+ +Y +CG    A  VFD +  RD V WN M++ YA   +GD  +A   L     
Sbjct: 68  VSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAH--MGDTGMATSLLCVMPD 125

Query: 254 ----------------------------MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
                                       M   G+  D  T + L+ +CG L    LG QI
Sbjct: 126 PDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQI 185

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG 345
           H L +K   ++DV   ++LVDMY K  +++DA   F GM  +N VSW  ++ G  QN   
Sbjct: 186 HALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQY 245

Query: 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENAL 405
              ++L                   L  C +++     RQ+HA+AIKN   +   +  A+
Sbjct: 246 MRGLEL-------------------LCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAI 286

Query: 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465
           ++ Y+K  S+  A + F  +    + T  +++      GL  E++++F+ M    +    
Sbjct: 287 VDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGV 346

Query: 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525
           ++   V SAC+        ++ F++         D      + DL G+   LVEAY +  
Sbjct: 347 VSLSGVFSACAE-------VKGFDV---------DVCVRNAILDLYGKCKALVEAYLVFQ 390

Query: 526 SM 527
            M
Sbjct: 391 EM 392



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 2/214 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   LK  A    L+ G  +H   +K GL     + + V+ +Y KC    +  KL D + 
Sbjct: 435 YGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIG 494

Query: 126 VRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            + +V+WN++I+G  +         +F  ML   V+ DH T+ ++L +C     IE+G++
Sbjct: 495 GQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQ 554

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  I+K     + F+SS LVD+Y KCG + D++ +F++V   D V WN M+  YAL+  
Sbjct: 555 IHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQ 614

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277
           G  A+ +F   +   +  ++ TF +++ +C  +G
Sbjct: 615 GFEALEMFERTQKANVAPNHATFVAVLRACSHVG 648



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  Y+  L   A    ++ GKQ+H  I+K  +     + + ++ +Y KC    D + +F+
Sbjct: 533 HFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFE 592

Query: 123 EMRVRNIVTWNTLISG--IINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +++  + V+WN +I G  +   G      F R    NV  +H TF ++LRAC     ++ 
Sbjct: 593 KVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDD 652

Query: 181 GRR 183
           G R
Sbjct: 653 GCR 655


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 305/576 (52%), Gaps = 8/576 (1%)

Query: 54  TIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA 113
           TI  + H+    ++ A  +S      + G+Q H+  +K    + +   + +L++Y K   
Sbjct: 111 TIVPNAHTLTGVFTAASTLSDS----RAGRQAHALAVKTACSHDVFAASSLLNMYCKTGL 166

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNV--RLDHITFNSLL 169
             +   LFDEM  RN V+W T+ISG  +          F+ M  +      +   F S+L
Sbjct: 167 VFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVL 226

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
            A      +  GR++HS  +K G      V++ALV +Y KCG +EDA + F+    ++ +
Sbjct: 227 SALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSI 286

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W+ MV+ +A     D A+ +F  M   G     FT   ++N+C    +   GRQ+HG  
Sbjct: 287 TWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYS 346

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           +K  ++L + V ++LVDMYAK G+I DA + F+ +   +VV W +++ G+ QNGD   A+
Sbjct: 347 LKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGAL 406

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
            L   M  G   P+++T+AS+L +C +L+   + +Q+HA  IK      + I +AL   Y
Sbjct: 407 NLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMY 466

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           +KCGS+    + F  +   D+++W ++I   + +G   E +E+FEKM     +PD++ F+
Sbjct: 467 AKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFV 526

Query: 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI 529
            +LSACSH GLV  G  YF +M  +++I P  EHY C+ D+L R G L EA + + S  +
Sbjct: 527 NLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATV 586

Query: 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589
           +         + A K H    L  +A EKL+EL   +   Y L+S++Y +   W DV R+
Sbjct: 587 DHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERV 646

Query: 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
           R MM+     K PGCSWIE+    H FV  D  HPQ
Sbjct: 647 RGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHPQ 682



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/505 (30%), Positives = 260/505 (51%), Gaps = 12/505 (2%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L++G+ LH+ I+  G  +   + N ++++Y KC  F     +FD +  +++V+WN LI+ 
Sbjct: 26  LRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINA 85

Query: 139 IINCGG-----NVTPYFRRMLLDNVRL--DHITFNSLLRACVQADDIEVGRRLHSFILKV 191
                      +V   FR++++ +  +  +  T   +  A     D   GR+ H+  +K 
Sbjct: 86  FSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKT 145

Query: 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVF 251
               + F +S+L+++Y K G V +AR +FDE+  R+ V W  M+S YA   L D A  +F
Sbjct: 146 ACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELF 205

Query: 252 NLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
            LMR E  G   + F F+S++++         GRQ+H L +K      V VA +LV MY 
Sbjct: 206 KLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYV 265

Query: 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLAS 369
           K G+++DA + F+    KN ++W+ MV GF Q GD  +A+KL  DM Q    P E TL  
Sbjct: 266 KCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVG 325

Query: 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           ++++C       E RQ+H Y++K G +  L + +AL++ Y+KCGSI  A + F  +++PD
Sbjct: 326 VINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPD 385

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           +V WTSII  Y  +G  + ++ ++ KM    V P+ +    VL ACS+   + +G +  +
Sbjct: 386 VVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQG-KQMH 444

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
             I  Y+   +    + L+ +  + G L + Y +   MP      +  A I     +G  
Sbjct: 445 AGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVI-SWNAMISGLSQNGRG 503

Query: 550 GLAKWAAEKLLELEPSKPVNYALVS 574
                  EK+  LE +KP N   V+
Sbjct: 504 NEGLELFEKMC-LEGTKPDNVTFVN 527



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 169/331 (51%), Gaps = 9/331 (2%)

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           H+     L  C +   +  GR LH+ IL  G   +  ++++L++LY KC     A  VFD
Sbjct: 10  HLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFD 69

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK-----GDYFTFSSLVNSCGTL 276
            +  +D+V WN +++ ++       ++ V +L R   M       +  T + +  +  TL
Sbjct: 70  SINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTL 129

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
             S+ GRQ H L +K +   DV  A+SL++MY K G + +A  +FD M  +N VSW TM+
Sbjct: 130 SDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMI 189

Query: 337 VGFGQNGDGREA---VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
            G+       EA    KL+R   +G    +E    S+LS+     +    RQVH+ A+KN
Sbjct: 190 SGYASQELADEAFELFKLMRHEEKGK-NENEFVFTSVLSALTCYMLVNTGRQVHSLAMKN 248

Query: 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVF 453
           G+   +S+ NAL+  Y KCGS+  AL+ F      + +TW++++  +A  G S +++++F
Sbjct: 249 GLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLF 308

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
             M      P     + V++ACS    + EG
Sbjct: 309 YDMHQSGELPSEFTLVGVINACSDACAIVEG 339


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 179/557 (32%), Positives = 314/557 (56%), Gaps = 11/557 (1%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD--DMEKLFDEMRVRNIVTWNTLIS 137
           Q+ +QLH+  +K  + N   + +++L +Y   K  D      +FD ++ R+++ WNT+I 
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86

Query: 138 GII-NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + N   +        L+     D+ T   +++ C +   ++ G+++H   LK+GFG +
Sbjct: 87  CYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSD 146

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            FV  +LV++Y KCG ++ AR+VFD ++ +D+VLWN ++  YA     D A+ +F  M  
Sbjct: 147 VFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP- 205

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
              + D F+++ LV+     G  +  R++      Q    +++   ++++ Y K+G+ D 
Sbjct: 206 ---ERDAFSWTVLVDGLSKCGKVESARKL----FDQMPCRNLVSWNAMINGYMKSGDFDS 258

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F  M   ++V+WN M+ G+  NG   +AVK+   ML+    P   TL S+LS+   
Sbjct: 259 ALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSG 318

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L++  + R +H+Y  KNG +    +  +LI  Y+KCG I  AL  F ++++  +  WT+I
Sbjct: 319 LAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAI 378

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I     HG++  ++ +F +M    ++P++I F+ VL+AC+H GLV +G +YF++M+++Y 
Sbjct: 379 IVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYK 438

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P  EHY CL D+L R G L EA + + +MPI P      + +G  + HG I + ++AA
Sbjct: 439 IEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAA 498

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           ++++E+ P     Y L+SN+YA+   W  V+ +R+MM      K PGCS +E  G +H F
Sbjct: 499 QRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEF 558

Query: 617 VSSDRSHPQAVHMYAML 633
           +  D SHPQ   +YA +
Sbjct: 559 IVGDISHPQTKEIYAKM 575



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 210/446 (47%), Gaps = 24/446 (5%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           + N   HD  VL  +L     +HE      +     +K  A+ G +Q+GKQ+H   +K+G
Sbjct: 89  VENQFSHDGIVLFHEL-----VHEYLPDNFTL-PCVIKGCARLGVVQEGKQIHGLALKIG 142

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRM 153
             + + +Q  ++++Y KC   D   K+FD M  +++V WN+LI G   CG        ++
Sbjct: 143 FGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGE--IDIALQL 200

Query: 154 LLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
             +    D  ++  L+    +   +E  R+L   +       N    +A+++ Y K G  
Sbjct: 201 FEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMP----CRNLVSWNAMINGYMKSGDF 256

Query: 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           + A  +F ++   DLV WN+M++ Y LN     A+ +F +M   G +  + T  S++++ 
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
             L     GR IH  + K  F+LD ++ TSL++MYAK G I+ A  VF  +  K V  W 
Sbjct: 317 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 376

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ-----VHA 388
            ++VG G +G    A+ L  +M +    P+ +    +L++C    +  + RQ     ++ 
Sbjct: 377 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 436

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSK 447
           Y I+  ++ +      L++   + G +  A     ++   P+ V W S++G    HG  K
Sbjct: 437 YKIEPTLEHY----GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG--K 490

Query: 448 ESIEVFEKMLSHAVRPDSIAFLEVLS 473
             I  +       V P++I    +LS
Sbjct: 491 IDIGEYAAQRVIEVAPETIGCYILLS 516


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 173/529 (32%), Positives = 301/529 (56%), Gaps = 4/529 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+  +K+GL   ++L N ++ +Y K    +   ++FD M  +N V+WN+ I   +N
Sbjct: 239 GLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLN 298

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G  G+V   FR+M   NV    IT +SLL A V+    ++GR +H + +K    L+ FV
Sbjct: 299 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 358

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++LVD+Y K G +E A  +F+++  R++V WN M++    N     A  +   M+  G 
Sbjct: 359 ANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGE 418

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             +  T  +++ +C  + S K+G+QIH   I++    D+ ++ +L+DMY+K G +  A  
Sbjct: 419 CPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARN 478

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F+  + K+ VS+NT+++G+ Q+    E++ L + M       D V+    LS+C +LS+
Sbjct: 479 IFE-RSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSV 537

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +++H   ++  +     + N+L++ Y+K G +  A + F  + + D+ +W ++I  
Sbjct: 538 FKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILG 597

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y  HG    + E+FE M    +  D ++++ VL+ACSHGGLV +G +YF+ M++  +I P
Sbjct: 598 YGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEP 656

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
              HY C+ DLLGR G L +  +++  MP    SD  GA +GAC++HG+I LA+WAAE L
Sbjct: 657 QQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHL 716

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
            EL+P     Y L+ N+YA    W +  ++RK+M+     K P  SW++
Sbjct: 717 FELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 270/510 (52%), Gaps = 21/510 (4%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +G +LH+  ++ G    +   N ++  Y  C    D  ++FDEM  R++V+WN+L+S  +
Sbjct: 137 KGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFL 196

Query: 141 NCGGNVTPYFRRMLLDNVR----LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             G  +    RR L+  +R    L+  +  S++ AC    + + G  +H+  +KVG    
Sbjct: 197 VNG--MFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTM 254

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             +++ALVD+YGK G VE + +VFD +L ++ V WN  + C+         + +F  M  
Sbjct: 255 VNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSE 314

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
             +     T SSL+ +   LGS  LGR++HG  IK++ DLD+ VA SLVDMYAK G+++ 
Sbjct: 315 HNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEK 374

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +F+ M  +NVVSWN M+    QNG   EA +L+ DM +   CP+ +TL ++L +C  
Sbjct: 375 ASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACAR 434

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           ++     +Q+HA++I+ G+   L I NALI+ YSKCG ++ A   F    E D V++ ++
Sbjct: 435 MASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTL 493

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR----YFNLMI 492
           I  Y+      ES+ +F++M S  +  D+++F+  LSAC++  +   G          ++
Sbjct: 494 ILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLL 553

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           S +  L +S     L DL  + G+LV A  +   +  +  + +    I    +HG I +A
Sbjct: 554 SGHPFLSNS-----LLDLYTKGGMLVTASKIFNKITKKDVA-SWNTMILGYGMHGQIDIA 607

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERC 582
                +L EL     ++Y  VS +     C
Sbjct: 608 F----ELFELMKGDGLDYDHVSYIAVLAAC 633



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 183/360 (50%), Gaps = 31/360 (8%)

Query: 164 TFNSLLRACVQADDI-----------------EVGRRLHSFILKVGFGLNCFVSSALVDL 206
            +N +LR+ V+ DD                  + G  LH+  L+ G   + F  + LV  
Sbjct: 104 VYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAF 163

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL-GDGAIAVFNLMRLEGMKGDYFT 265
           Y  CG   DARRVFDE+  RD+V WN +VS + +N +  D   A+ ++MR  G   +  +
Sbjct: 164 YAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMR-SGFPLNVAS 222

Query: 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
             S+V +CGT    K G  IH L +K   +  V +A +LVDMY K G+++ + +VFDGM 
Sbjct: 223 LVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGML 282

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +N VSWN+ +  F   G   + +++ R M + +  P  +TL+S+L +   L      R+
Sbjct: 283 EQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGRE 342

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           VH Y+IK  +   + + N+L++ Y+K GS+  A   F  +K+ ++V+W ++I     +G 
Sbjct: 343 VHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGA 402

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACS-----------HGGLVSEGLRYFNLMISD 494
             E+  +   M      P+SI  + VL AC+           H   +  GL  F+L IS+
Sbjct: 403 ETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGL-MFDLFISN 461



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 200/383 (52%), Gaps = 8/383 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    + G    G+++H + +K  +   + + N ++ +Y K  + +    +F++M+ 
Sbjct: 325 SSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKD 384

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR----LDHITFNSLLRACVQADDIEVGR 182
           RN+V+WN +I+ ++  G     +  R++ D  +     + IT  ++L AC +   +++G+
Sbjct: 385 RNVVSWNAMIANLVQNGAETEAF--RLVTDMQKSGECPNSITLVNVLPACARMASLKMGK 442

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H++ ++ G   + F+S+AL+D+Y KCG +  AR +F+    +D V +N ++  Y+ + 
Sbjct: 443 QIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERS-EKDDVSYNTLILGYSQSP 501

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               ++ +F  MR  G+  D  +F   +++C  L   K G++IH +++++       ++ 
Sbjct: 502 WCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN 561

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+D+Y K G +  A ++F+ +T K+V SWNTM++G+G +G    A +L   M       
Sbjct: 562 SLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDY 621

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D V+  ++L++C    +  + ++  +  +   ++        +++   + G ++   +  
Sbjct: 622 DHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEII 681

Query: 423 GSVKEP-DLVTWTSIIGAYAFHG 444
             +  P +   W +++GA   HG
Sbjct: 682 RDMPFPANSDVWGALLGACRIHG 704


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 173/529 (32%), Positives = 301/529 (56%), Gaps = 4/529 (0%)

Query: 82  GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIIN 141
           G  +H+  +K+GL   ++L N ++ +Y K    +   ++FD M  +N V+WN+ I   +N
Sbjct: 60  GLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLN 119

Query: 142 CG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV 199
            G  G+V   FR+M   NV    IT +SLL A V+    ++GR +H + +K    L+ FV
Sbjct: 120 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 179

Query: 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259
           +++LVD+Y K G +E A  +F+++  R++V WN M++    N     A  +   M+  G 
Sbjct: 180 ANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGE 239

Query: 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319
             +  T  +++ +C  + S K+G+QIH   I++    D+ ++ +L+DMY+K G +  A  
Sbjct: 240 CPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARN 299

Query: 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379
           +F+  + K+ VS+NT+++G+ Q+    E++ L + M       D V+    LS+C +LS+
Sbjct: 300 IFE-RSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSV 358

Query: 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA 439
               +++H   ++  +     + N+L++ Y+K G +  A + F  + + D+ +W ++I  
Sbjct: 359 FKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILG 418

Query: 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499
           Y  HG    + E+FE M    +  D ++++ VL+ACSHGGLV +G +YF+ M++  +I P
Sbjct: 419 YGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEP 477

Query: 500 DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559
              HY C+ DLLGR G L +  +++  MP    SD  GA +GAC++HG+I LA+WAAE L
Sbjct: 478 QQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHL 537

Query: 560 LELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
            EL+P     Y L+ N+YA    W +  ++RK+M+     K P  SW++
Sbjct: 538 FELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 586



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 249/467 (53%), Gaps = 21/467 (4%)

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR----LDHITFNSLLRACVQADDIE 179
           M  R++V+WN+L+S  +  G  +    RR L+  +R    L+  +  S++ AC    + +
Sbjct: 1   MPERDVVSWNSLVSAFLVNG--MFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEK 58

Query: 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239
            G  +H+  +KVG      +++ALVD+YGK G VE + +VFD +L ++ V WN  + C+ 
Sbjct: 59  FGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFL 118

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
                   + +F  M    +     T SSL+ +   LGS  LGR++HG  IK++ DLD+ 
Sbjct: 119 NAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIF 178

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           VA SLVDMYAK G+++ A  +F+ M  +NVVSWN M+    QNG   EA +L+ DM +  
Sbjct: 179 VANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSG 238

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
            CP+ +TL ++L +C  ++     +Q+HA++I+ G+   L I NALI+ YSKCG ++ A 
Sbjct: 239 ECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLAR 298

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F    E D V++ ++I  Y+      ES+ +F++M S  +  D+++F+  LSAC++  
Sbjct: 299 NIF-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLS 357

Query: 480 LVSEGLR----YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDT 535
           +   G          ++S +  L +S     L DL  + G+LV A  +   +  +  + +
Sbjct: 358 VFKHGKEIHCVLVRRLLSGHPFLSNS-----LLDLYTKGGMLVTASKIFNKITKKDVA-S 411

Query: 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582
               I    +HG I +A     +L EL     ++Y  VS +     C
Sbjct: 412 WNTMILGYGMHGQIDIAF----ELFELMKGDGLDYDHVSYIAVLAAC 454



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 200/383 (52%), Gaps = 8/383 (2%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           S  L    + G    G+++H + +K  +   + + N ++ +Y K  + +    +F++M+ 
Sbjct: 146 SSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKD 205

Query: 127 RNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR----LDHITFNSLLRACVQADDIEVGR 182
           RN+V+WN +I+ ++  G     +  R++ D  +     + IT  ++L AC +   +++G+
Sbjct: 206 RNVVSWNAMIANLVQNGAETEAF--RLVTDMQKSGECPNSITLVNVLPACARMASLKMGK 263

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H++ ++ G   + F+S+AL+D+Y KCG +  AR +F E   +D V +N ++  Y+ + 
Sbjct: 264 QIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQSP 322

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               ++ +F  MR  G+  D  +F   +++C  L   K G++IH +++++       ++ 
Sbjct: 323 WCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN 382

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+D+Y K G +  A ++F+ +T K+V SWNTM++G+G +G    A +L   M       
Sbjct: 383 SLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDY 442

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422
           D V+  ++L++C    +  + ++  +  +   ++        +++   + G ++   +  
Sbjct: 443 DHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEII 502

Query: 423 GSVKEP-DLVTWTSIIGAYAFHG 444
             +  P +   W +++GA   HG
Sbjct: 503 RDMPFPANSDVWGALLGACRIHG 525


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 199/616 (32%), Positives = 315/616 (51%), Gaps = 10/616 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAF 114
           +HE  +  ++  S  L +     +L+ GK +H   +K GL + + L N +L VY      
Sbjct: 255 VHEEIN--YTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRS 312

Query: 115 DDMEKLFDEMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRAC 172
            D E +F  M  R++++WN++++  +  G  +     F  ML     ++++TF S L AC
Sbjct: 313 KDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAAC 372

Query: 173 VQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN 232
           +  +    G+ LH F++ +G      + + L+  YGKC  + +A++VF  +   D V WN
Sbjct: 373 LDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWN 432

Query: 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGS-SKLGRQIHGLVI 290
            ++  +A N   + A+A F LMR     G DY T  +++ SC T     K G  IH   +
Sbjct: 433 ALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTV 492

Query: 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350
              FDLD  V +SL+ MYAK G++  +  +FD +  K    WN ++    + G G EA+K
Sbjct: 493 VTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALK 552

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L+  M       D+   ++ LS    L++  E +Q+H   IK G +    I NA ++ Y 
Sbjct: 553 LVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYG 612

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCG +  AL+      +   ++W ++I   A HG   ++ E F  ML   V+P+ ++F+ 
Sbjct: 613 KCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVC 672

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +LSACSHGGLV EGL Y+  M S Y I P  EH  C+ DLLGR G LVEA   +  MPI 
Sbjct: 673 LLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIP 732

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P      + + +C+++ ++ L + AA+ LLEL+PS    Y L SNV+A+   W DV  +R
Sbjct: 733 PNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVR 792

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN----NVS 646
             M  +   K P  SW++  G I  F   D++HPQ   +   L  +  ++ E     + S
Sbjct: 793 GQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTS 852

Query: 647 GHCNVLDKEMDECTLW 662
                 D+E  E  +W
Sbjct: 853 YSLQDTDEEQKEHNMW 868



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 210/410 (51%), Gaps = 4/410 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           ++G Q H   +K GL   + +    +H Y       + +K+F+EM  RN+V+W +L+   
Sbjct: 76  KEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSY 135

Query: 140 INCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
            + G    V   ++RM  + +  +      ++ +C    DI +G +L    LK G     
Sbjct: 136 SDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKV 195

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
             +++L+ ++G CG + +A  +F+E+  RD + WN ++S  A N L + +   F+ MRL 
Sbjct: 196 SAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLV 255

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
             + +Y T S L++ CG++   K G+ +HGL +K   + ++ +  +L+ +Y+  G   DA
Sbjct: 256 HEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDA 315

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377
             +F  M  ++++SWN+M+  + Q+G    A+K+  +ML      + VT  S L++C   
Sbjct: 316 ELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDP 375

Query: 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437
                 + +H + +  G+Q  L I N LI  Y KC  +A A + F  + + D VTW ++I
Sbjct: 376 EFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALI 435

Query: 438 GAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSAC-SHGGLVSEGL 485
           G +A +    E++  F+ M   +    D I  + +L +C +H  L+  G+
Sbjct: 436 GGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGI 485



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 229/480 (47%), Gaps = 14/480 (2%)

Query: 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHIT 164
           +Y K    +  + +FD M  RN  +WN ++SG +  G  V    +FR +    ++     
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 165 FNSLLRACVQADDI-EVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
             SL+ AC ++  + + G + H F +K G   + FV ++ V  Y   G V +A+++F+E+
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283
             R++V W  ++  Y+ N      I  +  MR EG+  +    + +++SCG L    LG 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           Q+ G  +K   +  V  A SL+ M+   G+I++AC +F+ M  ++ +SWN+++    QN 
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403
              E+ +    M       +  TL+ +LS CGS+      + VH  A+K G+++ + + N
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCN 300

Query: 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463
            L++ YS  G    A   F  + E DL++W S++  Y   G    +++VF +ML      
Sbjct: 301 TLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEI 360

Query: 464 DSIAFLEVLSACSHGGLVSEG--LRYFNLM--ISDYHILPDSEHYTCLTDLLGRVGLLVE 519
           + + F   L+AC      + G  L  F ++  + D  I+ ++     L    G+   + E
Sbjct: 361 NYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNT-----LITFYGKCHKMAE 415

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           A  +   MP   +  T  A IG    +  +  A  AA KL+    +  V+Y  + N+  S
Sbjct: 416 AKKVFQRMPKLDKV-TWNALIGGFANNAELNEAV-AAFKLMREGSTSGVDYITIVNILGS 473


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 320/572 (55%), Gaps = 8/572 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   A  G +  G+++H+  +K G  + + + N ++++Y KC   ++ + +F +M 
Sbjct: 204 FTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQME 263

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+WNTL++G++     +     F        +L   T++++++ C     + + R+
Sbjct: 264 TRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQ 323

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNC 242
           LHS +LK GF  +  V +A++D Y KCG ++DA  +F  +   +++V W  M+     N 
Sbjct: 324 LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNA 383

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A A+F+ MR + +K + FT+S+++ +   +    L  QIH  +IK ++     V T
Sbjct: 384 DIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI----LLPQIHAQIIKTNYQHAPSVGT 439

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +L+  Y+K GN ++A  +F  +  K+VV+W+ M+  + Q GD   A  +   M      P
Sbjct: 440 ALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKP 499

Query: 363 DEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           +E T++S + +C S +   +  RQ HA +IK   Q  + + +AL+  Y++ GSI  A   
Sbjct: 500 NEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIV 559

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F    + DLV+W S+I  YA HG SKE+++ F +M +  +  D   FL V+  C+H GLV
Sbjct: 560 FERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLV 619

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EG +YF+ M+ D++I P  EHY+C+ DL  R G L E  +L+  MP    +      +G
Sbjct: 620 KEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLG 679

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC+VH ++ L K AA+KLL LEP     Y L+SN+YA+   W +   +RK+M      K 
Sbjct: 680 ACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKE 739

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            GCSWI+I  ++H+F++ D+SHP +  +YA L
Sbjct: 740 AGCSWIQIKNKVHSFIACDKSHPLSEQIYAKL 771



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 220/426 (51%), Gaps = 8/426 (1%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCN-KLSLQNQVLHVYVKCKA 113
           +H       +  S+ LKV         G+QLH   +K G    ++ +   ++ +Y+KC  
Sbjct: 91  VHRCGRVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGG 150

Query: 114 FDDMEKLFDEMRVRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRA 171
            +D   +F+ M  RN+VTW +L++G +      +V   F RM  + V  +  TF S+L A
Sbjct: 151 VEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSA 210

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
                 +++GRR+H+  +K G     FV ++L+++Y KCG VE+A+ VF ++  RD+V W
Sbjct: 211 VASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSW 270

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
           N +++   LN     A+ +F+  R    K    T+S+++  C  L    L RQ+H  V+K
Sbjct: 271 NTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK 330

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT-AKNVVSWNTMVVGFGQNGDGREAVK 350
             F  D  V T+++D Y+K G +DDA  +F  M  ++NVVSW  M+ G  QN D   A  
Sbjct: 331 HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAA 390

Query: 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
           L   M + +  P+E T +++L++    SI     Q+HA  IK   Q   S+  AL+ +YS
Sbjct: 391 LFSRMREDNVKPNEFTYSTVLTA----SIPILLPQIHAQIIKTNYQHAPSVGTALLASYS 446

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           K G+   AL  F  +   D+V W++++  Y+  G    +  VF KM    ++P+      
Sbjct: 447 KLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISS 506

Query: 471 VLSACS 476
            + AC+
Sbjct: 507 AIDACA 512



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 3/314 (0%)

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFD-LDVLVATSLVDMYAKNGNIDDACRVFDGMT 325
           S ++  CG +     G Q+H L +K  FD  +V V T+LVDMY K G ++D   VF+GM 
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQ 385
            +NVV+W +++ G+ Q     + + L   M      P+  T  S+LS+  S       R+
Sbjct: 163 KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRR 222

Query: 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL 445
           VHA ++K G ++ + + N+LIN YSKCG +  A   F  ++  D+V+W +++     +  
Sbjct: 223 VHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEH 282

Query: 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505
             E++++F    +   +     +  V+  C++   ++   R  +  +  +    D    T
Sbjct: 283 QLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA-RQLHSCVLKHGFHSDGNVMT 341

Query: 506 CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565
            + D   + G L +A+++   MP      +  A IG C  +  I LA     ++ E +  
Sbjct: 342 AIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMRE-DNV 400

Query: 566 KPVNYALVSNVYAS 579
           KP  +   + + AS
Sbjct: 401 KPNEFTYSTVLTAS 414


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 300/576 (52%), Gaps = 37/576 (6%)

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD-NVRL 160
           VL  +V+ + F D   +FDE   R    W   ISG    G   +    F  ML +     
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATP 110

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           +     +++R C    D+E G+R+H ++L+ G  L+  + +A++D+Y KCG  E ARRVF
Sbjct: 111 NAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF 170

Query: 221 DEVLCRDLVLWNVMVSC----------------------YALNCL-------GDGAIAVF 251
             +  RD V WN+ +                         + N +       G  A A+ 
Sbjct: 171 GAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALS 230

Query: 252 NLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           +L R+   G+  +++T+S+     G L    LGRQ+HG V+  + + D  V +SL+DMY 
Sbjct: 231 HLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYC 290

Query: 310 KNGNIDDACRVFD---GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           K G ++ A  VFD    +T     +W+TMV G+ QNG   EA+ L R ML+     D  T
Sbjct: 291 KCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFT 350

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S+ ++C ++ +  + RQVH    K   +    + +A+++ Y+KCG++  A   F    
Sbjct: 351 LTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRAC 410

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++  WTS++ +YA HG  + +IE+FE+M +  + P+ I  + VLSACSH GLVSEG  
Sbjct: 411 TKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGEL 470

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YF  M  +Y I+P  EHY C+ DL GR GLL +A + +    I   +      + AC++H
Sbjct: 471 YFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLH 530

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
                AK A+EKL++LE     +Y ++SN+YA+   W D   LR  M++    K PG SW
Sbjct: 531 QHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSW 590

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           I +   +HTFV+ D SHPQ+  +YA L  +   ++E
Sbjct: 591 IHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKE 626



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 215/430 (50%), Gaps = 46/430 (10%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEK---------- 119
           ++  A  G ++ GK++H  +++ G+   + L N VL +Y KC  F+   +          
Sbjct: 119 VRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDA 178

Query: 120 ---------------------LFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLD 156
                                LFDE  +R+  +WNT+ISG++  G   +   + RRM   
Sbjct: 179 VSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQA 238

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            V  +H T+++           ++GR+LH  +L      + FV S+L+D+Y KCG +E A
Sbjct: 239 GVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAA 298

Query: 217 RRVFDE--VLCRDL-VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
             VFD    L RD+   W+ MV+ Y  N   + A+ +F  M  EG+  D FT +S+  +C
Sbjct: 299 ASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAAC 358

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
             +G  + GRQ+HG V K  + LD  +A+++VDMYAK GN++DA  +FD    KN+  W 
Sbjct: 359 ANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWT 418

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393
           +M+  +  +G GR A++L   M      P+E+TL  +LS+C  + +  E  +++   ++ 
Sbjct: 419 SMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEG-ELYFKQMQE 477

Query: 394 GVQAFLSIE--NALINAYSKCGSIAGALQCFGSVKEPDL----VTWTSIIGAYAFHGLSK 447
                 SIE  N +++ Y + G +  A      ++E ++    + W +++ A   H  ++
Sbjct: 478 EYGIVPSIEHYNCIVDLYGRSGLLDKAKNF---IEENNINHEAIVWKTLLSACRLHQHNE 534

Query: 448 ESIEVFEKML 457
            +    EK++
Sbjct: 535 YAKLASEKLV 544



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  YS A  ++        G+QLH  ++   L     +++ ++ +Y KC   +    +FD
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 123 EMR--VRNI-VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
                 R++   W+T+++G +  G        FRRML + V  D  T  S+  AC     
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
           +E GR++H  + K+ + L+  ++SA+VD+Y KCG +EDAR +FD    +++ +W  M+  
Sbjct: 364 VEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCS 423

Query: 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           YA +  G  AI +F  M  E M  +  T   ++++C  +G    G     L  KQ  +  
Sbjct: 424 YASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGE----LYFKQMQEEY 479

Query: 298 VLVAT-----SLVDMYAKNGNIDDA 317
            +V +      +VD+Y ++G +D A
Sbjct: 480 GIVPSIEHYNCIVDLYGRSGLLDKA 504



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 5/191 (2%)

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSF 360
            S++  + +     DA  VFD    +    W   + G  + G   + ++   +ML +G  
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 361 CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQ 420
            P+   LA+++  C  +      ++VH + ++NGV   + + NA+++ Y+KCG    A +
Sbjct: 109 TPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARR 168

Query: 421 CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480
            FG++ E D V+W   IGA    G    S+++F++    +   D+ ++  ++S     G 
Sbjct: 169 VFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDE----SPLRDTTSWNTIISGLMRSGH 224

Query: 481 VSEGLRYFNLM 491
            ++ L +   M
Sbjct: 225 AADALSHLRRM 235


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 190/592 (32%), Positives = 305/592 (51%), Gaps = 46/592 (7%)

Query: 109 VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLD--NVRLDHIT 164
           V  +   +  ++FD    R++  W ++ISG    G +      F  ML +      +   
Sbjct: 69  VIARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFV 128

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
              +LR C    D+E GRR+H +IL+ G   +  + +A++D+Y KCG    ARR F  + 
Sbjct: 129 LAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA 188

Query: 225 CRDLVLWNVMVSCYALNCLGD----GAIAVFN--------------------------LM 254
            +D   WN+++      CL D    GA  +F+                          L 
Sbjct: 189 QKDATSWNIVIRA----CLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALG 244

Query: 255 RLEGMKGDYFTFSSLVNS-----CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309
           RL+ M     TFS+   S      G L S  LGRQ+HG V+    + D  V  SL+DMY 
Sbjct: 245 RLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYC 304

Query: 310 KNGNIDDACRVFD---GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
           K G ++ A  +FD     T     +W+TMV G+ QNG   EA++  R ML+      +  
Sbjct: 305 KCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFI 364

Query: 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
           L S+ S+C +  +  + RQVH +  K G +    + +A+++ YSK GS+  A + F S +
Sbjct: 365 LTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQ 424

Query: 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486
             ++  WT+++ +YA HG  + ++E+F +M +  + P+ I  + VLSACSH GLVS+G  
Sbjct: 425 TKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYH 484

Query: 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546
           YFNLM  +Y I+P++EHY C+ DL GR GLL +A + +    I   +      + AC++H
Sbjct: 485 YFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLH 544

Query: 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606
             I  A+ A+EKL++LE     +Y L+SN+YA+   W D  +LR  M++    K PG SW
Sbjct: 545 KHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSW 604

Query: 607 IEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           I +   +H FV+ D SHP++  +YA L  +   ++E   +   +++  +++E
Sbjct: 605 IHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEE 656



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 196/416 (47%), Gaps = 46/416 (11%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC-------KAFDDM----- 117
           L+  A  G ++ G+++H  I++ G+C  + L N VL +Y KC       +AF  M     
Sbjct: 133 LRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDA 192

Query: 118 -------------------EKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFR--RMLLD 156
                               +LFDE  +R++ +WNT++SG++  G       R  +M+  
Sbjct: 193 TSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRA 252

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            V   + T++ +          ++GR+LH  ++      + FV  +L+D+Y KCG +E A
Sbjct: 253 GVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESA 312

Query: 217 RRVFDEV--LCRDLVL-WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
             +FD       D    W+ MV+ Y  N   + A+  F  M  EG+    F  +S+ ++C
Sbjct: 313 LSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASAC 372

Query: 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWN 333
              G  + GRQ+HG V K     D  +A+++VDMY+K+G+++DACR+F     KNV  W 
Sbjct: 373 ANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWT 432

Query: 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV-----HA 388
           TM+  +  +G GR A+++   M      P+E+TL ++LS+C    +  +           
Sbjct: 433 TMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEE 492

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
           Y I    + +    N +++ Y + G +  A       K   + V W +++ A   H
Sbjct: 493 YGIVPNTEHY----NCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLH 544



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 132/279 (47%), Gaps = 9/279 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD--- 122
           YS    ++        G+QLH  ++   L     +   ++ +Y KC   +    +FD   
Sbjct: 261 YSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWS 320

Query: 123 EMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           +        W+T+++G +  G       +FRRML + V        S+  AC  A  +E 
Sbjct: 321 DFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQ 380

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240
           GR++H F+ K+G   +  ++SA+VD+Y K G +EDA R+F     +++ LW  M+  YA 
Sbjct: 381 GRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYAS 440

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DV 298
           +  G  A+ +F+ M+ E +  +  T  +++++C   G    G     L +++ + +  + 
Sbjct: 441 HGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNL-MQEEYGIVPNT 499

Query: 299 LVATSLVDMYAKNGNIDDACR-VFDGMTAKNVVSWNTMV 336
                +VD+Y + G +D A   + +   +   V W T++
Sbjct: 500 EHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLL 538



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 10/204 (4%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A  G ++QG+Q+H  + KLG      L + ++ +Y K  + +D  ++F   + +N+  W 
Sbjct: 373 ANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWT 432

Query: 134 TLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF-ILK 190
           T++    + G        F RM  + +  + IT  ++L AC  +  +  G   H F +++
Sbjct: 433 TMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDG--YHYFNLMQ 490

Query: 191 VGFGL--NCFVSSALVDLYGKCGFVEDARRVFDE-VLCRDLVLWNVMVS-CYALNCLGDG 246
             +G+  N    + +VDLYG+ G ++ A+   +E  +  + V+W  ++S C     +   
Sbjct: 491 EEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYA 550

Query: 247 AIAVFNLMRLEGMK-GDYFTFSSL 269
            +A   L++LE    G Y   S++
Sbjct: 551 QLASEKLVQLEQYDAGSYVLMSNM 574


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 292/502 (58%), Gaps = 10/502 (1%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
           T+  L+ +C + + +  G  LH  ++  G   + F+++ L+++Y +   +++AR+VFD+ 
Sbjct: 80  TYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKT 139

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL-- 281
             R + +WN +     L   G   + ++  M   G+  D FT++ ++ +C  + S     
Sbjct: 140 RKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKAC--VASEAFVS 197

Query: 282 ----GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVV 337
               GR+IHG +++  F+  V + T+L+DMYA+ G + +A RVFD M  KNVVSW+ M+ 
Sbjct: 198 LLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIA 257

Query: 338 GFGQNGDGREAVKLLRDML--QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
            + +NG   EA++L R M+       P+ VT+ S+L +C +L+   + + +H Y ++ G+
Sbjct: 258 CYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGL 317

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            + L + +AL+  Y++CG++    + F  +++ D+V+W S+I +Y  HG  +++I++F++
Sbjct: 318 DSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKE 377

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M+   + P  I+F+ VL ACSH GLV EG   F  M+  + I P  EHY C+ DLLGR  
Sbjct: 378 MIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRAN 437

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
            L EA  ++  M IEP     G+ +G+C++H ++ LA+ A  +L ELEP+   NY L+++
Sbjct: 438 RLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLAD 497

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCT 635
           +YA  + W +V R++ ++      KVPG S IEI  +I++F+S D  +PQ   ++A+L  
Sbjct: 498 IYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLK 557

Query: 636 VFGLMEENNVSGHCNVLDKEMD 657
           +   M+E        V+  ++D
Sbjct: 558 LSMEMKEKGYVPDTKVVLYDLD 579



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 223/432 (51%), Gaps = 21/432 (4%)

Query: 31  TTTITNAQKHDRSVLSSQLRNSGTI--------HESTHSAHSFYSQALKVSAKFGFLQQG 82
           TTT +N   ++ + L   L   G +         E   + H++    L  + +   L QG
Sbjct: 39  TTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQ-NSLPQG 97

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140
             LH H++  G      L  +++++Y +  + D+  K+FD+ R R I  WN L   +   
Sbjct: 98  IDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLA 157

Query: 141 NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADD----IEVGRRLHSFILKVGFGLN 196
             G  V   +RRM    V  D  T+  +L+ACV ++     +  GR +H  IL+ GF  +
Sbjct: 158 GYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGH 217

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + + L+D+Y + G V +A RVFD++  +++V W+ M++CY+ N     A+ +F  M L
Sbjct: 218 VHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMML 277

Query: 257 EG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNI 314
           E   +  +  T  S++ +C  L + + G+ +HG ++++  D  + V ++LV +YA+ GN+
Sbjct: 278 ENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNL 337

Query: 315 DDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +   RVF+ M  ++VVSWN+++  +G +G GR+A+++ ++M+     P  ++  S+L +C
Sbjct: 338 ELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGAC 397

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQCFGSVK-EPDLV 431
               +  E + +    ++ G + F S+E+   +++   +   +  A +    ++ EP   
Sbjct: 398 SHAGLVEEGKVLFESMVR-GHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPK 456

Query: 432 TWTSIIGAYAFH 443
            W S++G+   H
Sbjct: 457 VWGSLLGSCRIH 468



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 31/213 (14%)

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
           N ++    + G+  +A+++L         P + T   ++ SC   +   +   +H + I 
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQEPN----PTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
           +G      +   LIN YS+  SI  A + F   ++  +  W ++  A    G  +E +++
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDL 166

Query: 453 FEKMLSHAVRPDSIAFLEVLSACS---------------HGGLVSEGLRYFNLMISDYHI 497
           + +M    V  D   +  VL AC                HG ++  G           HI
Sbjct: 167 YRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFE------GHVHI 220

Query: 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +      T L D+  R G ++ A  +   MP++
Sbjct: 221 M------TTLLDMYARFGCVLNASRVFDQMPVK 247


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 176/496 (35%), Positives = 295/496 (59%), Gaps = 1/496 (0%)

Query: 148 PYFRRMLLDNVRLDHIT-FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
           P  + ++   +R  H++    LL++  +      G   H+ I++VG   +   S+ L+++
Sbjct: 32  PSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNM 91

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           Y KCG VE AR++FDE+  R LV WN MV  +  N   + A+ +F  M+ EG     FT 
Sbjct: 92  YSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTV 151

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           SS+V +C         +Q+HG  +K + D +V V T+L+D+YAK G + DA  VF+ M  
Sbjct: 152 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 211

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           ++ V+W++MV G+ QN    EA+ L           ++ T++S LS+C + +   E +QV
Sbjct: 212 RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQV 271

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
            A + K G+ + + + ++LI+ Y+KCG I  A   F SV+E ++V W +I+  ++ H  S
Sbjct: 272 QAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRS 331

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
            E++  FEKM    + P+ I ++ VLSACSH GLV +G +YF+LMI  +++ P+  HY+C
Sbjct: 332 LEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSC 391

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + D+LGR GLL EA D +  MP +  +   G+ + +C+++ ++ LA+ AA+ L E+EP  
Sbjct: 392 MVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHN 451

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
             N+ L+SN+YA+   W +VAR R +++++   K  G SWIEI  ++H+F+  +R+HP+ 
Sbjct: 452 AGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRI 511

Query: 627 VHMYAMLCTVFGLMEE 642
           V +Y  L  + G M++
Sbjct: 512 VEIYLKLEDLVGEMKK 527



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 2/318 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+     +G   H+ I+++GL       N ++++Y KC   +   KLFDEM VR++
Sbjct: 54  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 113

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WNT++      G        F +M  +       T +S++ AC     +   ++LH F
Sbjct: 114 VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 173

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            LK     N FV +AL+D+Y KCG V+DA  VF+ +  R  V W+ MV+ Y  N L + A
Sbjct: 174 ALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEA 233

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F+  +  G++ + FT SS +++C    +   G+Q+  +  K     ++ V +SL+DM
Sbjct: 234 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDM 293

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G I++A  VF  +  KNVV WN ++ GF ++    EA+     M Q   CP+++T 
Sbjct: 294 YAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITY 353

Query: 368 ASILSSCGSLSISCETRQ 385
            S+LS+C  L +  + R+
Sbjct: 354 ISVLSACSHLGLVEKGRK 371



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +GKQ+ +   K G+ + + + + ++ +Y KC   ++   +F  +  +N+V WN ++SG  
Sbjct: 267 EGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFS 326

Query: 141 NCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV-GFGLNC 197
               ++    YF +M    +  + IT+ S+L AC     +E GR+    +++V     N 
Sbjct: 327 RHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNV 386

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSCYALNCLGDGAIAVFNLMR 255
              S +VD+ G+ G + +A+   D +       +W +++ SC     L    +A  +L  
Sbjct: 387 LHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFE 446

Query: 256 LE 257
           +E
Sbjct: 447 IE 448


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 303/555 (54%), Gaps = 7/555 (1%)

Query: 85   LHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144
            +H+H++K    + + +    + ++VKC + D   K+F+ M  R+  TWN ++SG    G 
Sbjct: 680  VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGH 739

Query: 145  NVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202
                +  FR M L+ +  D +T  +L+++      +++   +H+  +++G  +   V++ 
Sbjct: 740  TDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANT 799

Query: 203  LVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
             +  YGKCG ++ A+ VF+ +    R +V WN M   Y++      A  ++ LM  E  K
Sbjct: 800  WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 859

Query: 261  GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
             D  TF +L  SC    +   GR IH   I    D D+    + + MY+K+ +   A  +
Sbjct: 860  PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLL 919

Query: 321  FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
            FD MT++  VSW  M+ G+ + GD  EA+ L   M++    PD VTL S++S CG    S
Sbjct: 920  FDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFG-S 978

Query: 381  CET-RQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIG 438
             ET + + A A   G +   + I NALI+ YSKCGSI  A   F +  E  +VTWT++I 
Sbjct: 979  LETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIA 1038

Query: 439  AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498
             YA +G+  E++++F KM+    +P+ I FL VL AC+H G + +G  YF++M   Y+I 
Sbjct: 1039 GYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNIS 1098

Query: 499  PDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558
            P  +HY+C+ DLLGR G L EA +L+ +M  +P +   GA + ACK+H ++ +A+ AAE 
Sbjct: 1099 PGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAES 1158

Query: 559  LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVS 618
            L  LEP     Y  ++N+YA+   W   AR+R +M+     K PG S I++ G+ H+F  
Sbjct: 1159 LFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTV 1218

Query: 619  SDRSHPQAVHMYAML 633
             +  H +   +Y  L
Sbjct: 1219 GEHGHVENEVIYFTL 1233



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 190/406 (46%), Gaps = 6/406 (1%)

Query: 128  NIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185
            ++  WN  I   +N    V     FR M       ++ TF  + +AC +  D+     +H
Sbjct: 622  SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 681

Query: 186  SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
            + ++K  F  + FV +A VD++ KC  V+ A +VF+ +  RD   WN M+S +  +   D
Sbjct: 682  AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 741

Query: 246  GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
             A ++F  MRL  +  D  T  +L+ S     S KL   +H + I+   D+ V VA + +
Sbjct: 742  KAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWI 801

Query: 306  DMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
              Y K G++D A  VF+ +    + VVSWN+M   +   G+  +A  L   ML+  F PD
Sbjct: 802  STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 861

Query: 364  EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
              T  ++ +SC +     + R +H++AI  G    +   N  I+ YSK      A   F 
Sbjct: 862  LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 921

Query: 424  SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
             +     V+WT +I  YA  G   E++ +F  M+    +PD +  L ++S C   G +  
Sbjct: 922  IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLET 981

Query: 484  GLRYFNLMISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLLASMP 528
            G ++ +     Y    D+      L D+  + G + EA D+  + P
Sbjct: 982  G-KWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP 1026



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 6/254 (2%)

Query: 79   LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
            L QG+ +HSH + LG    +   N  + +Y K +       LFD M  R  V+W  +ISG
Sbjct: 878  LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 937

Query: 139  IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL- 195
                G        F  M+    + D +T  SL+  C +   +E G+ + +     G    
Sbjct: 938  YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRD 997

Query: 196  NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
            N  + +AL+D+Y KCG + +AR +FD    + +V W  M++ YALN +   A+ +F+ M 
Sbjct: 998  NVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMI 1057

Query: 256  LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGN 313
                K ++ TF +++ +C   GS + G + +  ++KQ +++   +   + +VD+  + G 
Sbjct: 1058 DLDYKPNHITFLAVLQACAHSGSLEKGWE-YFHIMKQVYNISPGLDHYSCMVDLLGRKGK 1116

Query: 314  IDDACRVFDGMTAK 327
            +++A  +   M+AK
Sbjct: 1117 LEEALELIRNMSAK 1130


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 296/548 (54%), Gaps = 3/548 (0%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           + Q + LH   +  G    +++ N +L++Y KC    D + LFD+M  R++V+WNT+ISG
Sbjct: 160 ITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISG 219

Query: 139 IINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             + G    +     RM  D +R D  TF + L       D+E+GR LH  I+K GF ++
Sbjct: 220 YASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVD 279

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
             + +AL+ +Y KCG  E + RV + +  +D+V W VM+S        + A+ VF+ M  
Sbjct: 280 MHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQ 339

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            G        +S+V SC  LGS  LG  +HG V++  + LD     SL+ MYAK G++D 
Sbjct: 340 SGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDK 399

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCG 375
           +  +F+ M  +++VSWN ++ G+ QN D  +A+ L  +M  +     D  T+ S+L +C 
Sbjct: 400 SLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACS 459

Query: 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS 435
           S       + +H   I++ ++    ++ AL++ YSKCG +  A +CF S+   D+V+W  
Sbjct: 460 SAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGI 519

Query: 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495
           +I  Y FHG    ++E++ + L   + P+ + FL VLS+CSH G+V +GL+ F+ M+ D+
Sbjct: 520 LIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDF 579

Query: 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWA 555
            + P+ EH  C+ DLL R   + +A+         P  D LG  + AC+ +G   +    
Sbjct: 580 GVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGIILDACRANGKTEVEDII 639

Query: 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHT 615
            E ++EL+P    +Y  + + +A+ + W DV+     MR     K+PG S IE+ G+  T
Sbjct: 640 CEDMIELKPGDAGHYVKLGHSFAAMKRWDDVSESWNQMRSLGLKKLPGWSKIEMNGKTTT 699

Query: 616 FVSSDRSH 623
           F  +  SH
Sbjct: 700 FFMNHTSH 707



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 248/515 (48%), Gaps = 10/515 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +   LK  A    L  G  +H  ++  G  +   + + ++++Y K        K+F+EMR
Sbjct: 49  FPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMR 108

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V W  +I      G  G        M    ++   +T   +L   ++   ++    
Sbjct: 109 ERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQC--- 165

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH F +  GF  +  V +++++LY KC  V DA+ +FD++  RD+V WN M+S YA    
Sbjct: 166 LHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGN 225

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
               + +   MR +G++ D  TF + ++  GT+   ++GR +H  ++K  FD+D+ + T+
Sbjct: 226 MSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTA 285

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ MY K G  + + RV + +  K+VV W  M+ G  + G   +A+ +  +MLQ      
Sbjct: 286 LITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLS 345

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
              +AS+++SC  L        VH Y +++G        N+LI  Y+KCG +  +L  F 
Sbjct: 346 SEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFE 405

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVS 482
            + E DLV+W +II  YA +    +++ +FE+M    V+  DS   + +L ACS  G + 
Sbjct: 406 RMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALP 465

Query: 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGA 542
            G     ++I  + I P S   T L D+  + G L  A     S+  +    + G  I  
Sbjct: 466 VGKLIHCIVIRSF-IRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVV-SWGILIAG 523

Query: 543 CKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVSN 575
              HG   +A     + L   +EP+  +  A++S+
Sbjct: 524 YGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSS 558



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 176/335 (52%), Gaps = 3/335 (0%)

Query: 145 NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALV 204
            V   F  ML + +  D  TF SLL+AC     +  G  +H  +L  GF  + ++SS+LV
Sbjct: 29  QVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLV 88

Query: 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF 264
           +LY K G +  AR+VF+E+  RD+V W  M+ CY+   +   A ++ N MR +G+K    
Sbjct: 89  NLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPV 148

Query: 265 TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324
           T   +++  G L  ++L + +H   +   FD D+ V  S++++Y K  ++ DA  +FD M
Sbjct: 149 TLLEMLS--GVLEITQL-QCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQM 205

Query: 325 TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
             +++VSWNTM+ G+   G+  E +KLL  M      PD+ T  + LS  G++      R
Sbjct: 206 EQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGR 265

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
            +H   +K G    + ++ ALI  Y KCG    + +   ++   D+V WT +I      G
Sbjct: 266 MLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLG 325

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
            +++++ VF +ML       S A   V+++C+  G
Sbjct: 326 RAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLG 360



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 171/312 (54%), Gaps = 3/312 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +  +L VS     L+ G+ LH  I+K G    + L+  ++ +Y+KC   +   ++ + + 
Sbjct: 248 FGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIP 307

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            +++V W  +ISG++  G        F  ML     L      S++ +C Q    ++G  
Sbjct: 308 NKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGAS 367

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H ++L+ G+ L+    ++L+ +Y KCG ++ +  +F+ +  RDLV WN ++S YA N  
Sbjct: 368 VHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVD 427

Query: 244 GDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
              A+ +F  M+ + ++  D FT  SL+ +C + G+  +G+ IH +VI+       LV T
Sbjct: 428 LCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDT 487

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           +LVDMY+K G ++ A R FD ++ K+VVSW  ++ G+G +G G  A+++  + L     P
Sbjct: 488 ALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEP 547

Query: 363 DEVTLASILSSC 374
           + V   ++LSSC
Sbjct: 548 NHVIFLAVLSSC 559



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 73/143 (51%)

Query: 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAI 391
           +N+ +     +GD ++ +     ML     PD  T  S+L +C SL        +H   +
Sbjct: 14  FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73

Query: 392 KNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE 451
            NG  +   I ++L+N Y+K G +A A + F  ++E D+V WT++IG Y+  G+  E+  
Sbjct: 74  VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACS 133

Query: 452 VFEKMLSHAVRPDSIAFLEVLSA 474
           +  +M    ++P  +  LE+LS 
Sbjct: 134 LVNEMRFQGIKPGPVTLLEMLSG 156


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 195/622 (31%), Positives = 332/622 (53%), Gaps = 41/622 (6%)

Query: 81   QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
            +G Q+H  ++K G+   + +   ++H Y       + +KLF+EM   N+V+W +L+ G  
Sbjct: 393  EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 452

Query: 141  NCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF 198
            + G  G V   ++RM  + V  +  TF ++  +C   +D  +G ++   I++ GF  +  
Sbjct: 453  DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 512

Query: 199  VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
            V+++L+ ++     VE+A  VFD +   D++ WN M+S YA + L   ++  F+ MR   
Sbjct: 513  VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 572

Query: 259  MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
             + +  T SSL++ C ++ + K GR IHGLV+K   D +V +  +L+ +Y++ G  +DA 
Sbjct: 573  NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 632

Query: 319  RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI-------- 370
             VF  MT ++++SWN+M+  + Q+G   + +K+L ++LQ    PD VT  ++        
Sbjct: 633  LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG-KPDRVTWNALIGGHAENE 691

Query: 371  --------------------------LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
                                      L++  +L++  E +Q+H   IK G ++ L + NA
Sbjct: 692  EPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNA 751

Query: 405  LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
             ++ Y KCG +   L+          ++W  +I A+A HG  +++ E F +ML    +PD
Sbjct: 752  AMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD 811

Query: 465  SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
             + F+ +LSAC+HGGLV EGL Y++ M  ++ + P  EH  C+ DLLGR G L  A   +
Sbjct: 812  HVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFI 871

Query: 525  ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
              MP+ P      + + AC++HG++ LA+  AE LLEL+PS    Y L SNV A+   W 
Sbjct: 872  KEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWE 931

Query: 585  DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN- 643
            DV  LRK M  N   K P CSW+++  ++H+F   ++ HPQA  + A L  +  + +E  
Sbjct: 932  DVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAG 991

Query: 644  ---NVSGHCNVLDKEMDECTLW 662
               + S   + +D+E  E  LW
Sbjct: 992  YVPDTSFALHDMDEEQKEYNLW 1013



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 208/493 (42%), Gaps = 118/493 (23%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE 123
           S Y + L++       +QG  +H+H++  G  + L L  +++  YVK         +FD 
Sbjct: 31  SLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDG 90

Query: 124 MRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           M  R++V+W  ++SG    G      F +          + F+ +    V+A+       
Sbjct: 91  MPERSVVSWTAMVSGYSQNG-----RFEKAF--------VLFSDMRHCGVKAN------- 130

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
                             ALVD + KCG +EDA  +F  ++ RD+V WN M+  YA+   
Sbjct: 131 -----------------HALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGF 173

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK---QSFDL---- 296
            D +  +F  M   G+  D +T  S++ +    G   +  QIHG++ +    S+D+    
Sbjct: 174 ADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGL 233

Query: 297 ------------------------DVLVAT----------------SLVDMYAKNGNIDD 316
                                   D+  +T                +L+DMYAK+G I+D
Sbjct: 234 LINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIED 293

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDG------------------------------- 345
           A R FD M  KNV+SW +++ G+ ++G G                               
Sbjct: 294 AKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVG 353

Query: 346 --REAVKLLRDMLQGSFCPDEVTLASILSSCG-SLSISCETRQVHAYAIKNGVQAFLSIE 402
              EAV L   M      P+   +AS++++C  S  ++ E  QVH + +K G+   + + 
Sbjct: 354 LYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVG 413

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462
            AL++ Y   G +  A + F  + + ++V+WTS++  Y+  G   E + V+++M    V 
Sbjct: 414 TALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVS 473

Query: 463 PDSIAFLEVLSAC 475
            +   F  V S+C
Sbjct: 474 GNQNTFATVTSSC 486



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 189/467 (40%), Gaps = 123/467 (26%)

Query: 144 GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL 203
           G +    + +  +  RLD   +  +L+ C+     + G  +H+ ++  GFG +  +++ L
Sbjct: 12  GRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKL 71

Query: 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
           +  Y K G V  AR VFD +  R +V W  MVS Y+ N   + A  +F+ MR  G+K ++
Sbjct: 72  IIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANH 131

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG 323
                                                  +LVD ++K G ++DA  +F  
Sbjct: 132 ---------------------------------------ALVDFHSKCGKMEDASYLFGT 152

Query: 324 MTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC---GSLSIS 380
           M  ++VVSWN M+ G+   G   ++  + R ML+G   PD  TL S+L +    G L I+
Sbjct: 153 MMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIA 212

Query: 381 CETRQ-----------------VHAYAIKNGV---------------------------- 395
            +                    ++AYA KNG                             
Sbjct: 213 NQIHGIITQLGYGSYDIVTGLLINAYA-KNGSLRSAKDLRKGMLKKDLFSSTALITGYAH 271

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH------------ 443
           +   ++ NALI+ Y+K G I  A + F  ++E ++++WTS+I  YA H            
Sbjct: 272 EGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVF 331

Query: 444 ---------------------GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG-LV 481
                                GL +E++ +F +M    V P+      +++ACS  G + 
Sbjct: 332 DEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMA 391

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
            EG +    ++    IL D    T L    G +GL+  A  L   MP
Sbjct: 392 DEGFQVHGFVVKT-GILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 437



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 114/230 (49%), Gaps = 35/230 (15%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           L+ G+ +H  ++KLGL + + + N +L +Y +    +D E +F  M  R++++WN++++ 
Sbjct: 593 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 652

Query: 139 IINCGGNVTPY-FRRMLLDNVRLDHITFNSLLRACVQADD-------------------- 177
            +  G  +        LL   + D +T+N+L+    + ++                    
Sbjct: 653 YVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANY 712

Query: 178 --------------IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV 223
                         +E G++LH  ++K+GF  +  V++A +D+YGKCG + D  ++  + 
Sbjct: 713 ITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 772

Query: 224 LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273
           + R  + WN+++S +A +     A   F+ M   G K D+ TF SL+++C
Sbjct: 773 INRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 822



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           +L  +A    L++G+QLH  ++KLG  + L + N  + +Y KC    D+ K+  +   R+
Sbjct: 717 SLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRS 776

Query: 129 IVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
            ++WN LIS      C       F  ML    + DH+TF SLL AC     ++ G   + 
Sbjct: 777 RLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYD 836

Query: 187 FILKVGFGLNCFVSS--ALVDLYGKCGFVEDARRVFDE--VLCRDLVLWNVMVSC 237
            + +  FG+   +     ++DL G+ G +  A     E  V   DL   +++ +C
Sbjct: 837 SMTRE-FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAAC 890


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 186/582 (31%), Positives = 298/582 (51%), Gaps = 42/582 (7%)

Query: 90  MKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVT 147
           +K G    + + + +L+ Y +  + D     F+ M  RN  +W T+I+    CG   +  
Sbjct: 388 IKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAI 447

Query: 148 PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY 207
             + R+    V     T  +++ A  Q   I+  R +   IL      N    +A++  Y
Sbjct: 448 QLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEILNP----NVVAWNAIIAGY 499

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
            + G +++A+ +F ++  ++   W  M++ +  N     A+ +   +   G      +F+
Sbjct: 500 TQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFT 559

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
           S +++C  +G  ++GR IH L IK     +  V   L+ MYAK GN++D   VF  +  K
Sbjct: 560 SALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK 619

Query: 328 NVVSWNTMVVGFGQN-------------------------------GDGREAVKLLRDML 356
           + VSWN+++ G  +N                               G G  A+ L  DML
Sbjct: 620 DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML 679

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P+++T+ S+LS+CG+L       Q HA   K G   FL + N+LI  Y KCG   
Sbjct: 680 ARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED 739

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
           G    F  + E DL+TW +++   A +GL KE+I++FE+M    + PD ++FL VL ACS
Sbjct: 740 G-FCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 798

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
           H GLV EG  +FN M   Y I+P   HYTC+ DLLGR G L EA  L+ +MP++P S   
Sbjct: 799 HAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIW 858

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596
            A +GAC++H ++ L +  AE+L ++   K   Y L+SN++AS+  W  VA +RK+M+D 
Sbjct: 859 EALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQ 918

Query: 597 CDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
              K PG SWI++  ++H FV+ DR+H Q   +Y+ L   +G
Sbjct: 919 GLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYG 960



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 204/433 (47%), Gaps = 45/433 (10%)

Query: 74  AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWN 133
           A+ G +Q+ + +   I+   +       N ++  Y +     + + LF +M V+N  +W 
Sbjct: 469 AQVGRIQKARLIFDEILNPNVV----AWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWA 524

Query: 134 TLISGIINCGGNVTPYFRRMLLDNVRLDHI----TFNSLLRACVQADDIEVGRRLHSFIL 189
            +I+G +      +     +L++  R   +    +F S L AC    D+E+GR +HS  +
Sbjct: 525 AMIAGFVQ--NEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAI 582

Query: 190 KVGFGLNCFVSSALVDLYGKCGFVED-------------------------------ARR 218
           K G   N +V + L+ +Y KCG VED                               AR 
Sbjct: 583 KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARV 642

Query: 219 VFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           VF+++  RD+V W  ++S Y     G+ A+ +F  M   G+K +  T +SL+++CG LG+
Sbjct: 643 VFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGA 702

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
            KLG Q H L+ K  FD  + V  SL+ MY K G  D  C VF+ M   ++++WN ++VG
Sbjct: 703 IKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPEHDLITWNAVLVG 761

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQA 397
             QNG G+EA+K+   M      PD+++   +L +C    +  E     ++   K G+  
Sbjct: 762 CAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMP 821

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
            +     +++   + G ++ A     ++  +PD V W +++GA   H   +    V E++
Sbjct: 822 LVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERL 881

Query: 457 LSHAVRPDSIAFL 469
                +P S  ++
Sbjct: 882 F-QMTKPKSATYV 893



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 201/423 (47%), Gaps = 41/423 (9%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVR 159
           N V+  Y  C    +  +LFD+M  RN V+W  +ISG ++       +  F +M     R
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            D   F  +L A    DD+E+   L    +K G+  +  V SA+++ Y + G ++ A   
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+ +  R+   W  M++ +A     D AI ++  +  + +     T ++++ +   +G  
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRI 474

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
           +  R    L+  +  + +V+   +++  Y +NG + +A  +F  M  KN  SW  M+ GF
Sbjct: 475 QKAR----LIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGF 530

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
            QN + REA++LL ++ +    P + +  S LS+C ++      R +H+ AIK G Q   
Sbjct: 531 VQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS 590

Query: 400 SIENALINAYSKCGSIAGALQCFGSVK-------------------------------EP 428
            + N LI+ Y+KCG++      F +++                               + 
Sbjct: 591 YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR 650

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           D+V+WT+II AY   G  + ++++F  ML+  ++P+ +    +LSAC + G +  G ++ 
Sbjct: 651 DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 489 NLM 491
            L+
Sbjct: 711 ALI 713



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 162/340 (47%), Gaps = 45/340 (13%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLG 93
           + N +  +   L  +L  SG++      + S ++ AL   A  G ++ G+ +HS  +K G
Sbjct: 531 VQNEESREALELLIELHRSGSV-----PSDSSFTSALSACANIGDVEIGRVIHSLAIKTG 585

Query: 94  LCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG--------------- 138
                 + N ++ +Y KC   +D   +F  +RV++ V+WN+LISG               
Sbjct: 586 CQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFE 645

Query: 139 ------IINCGGNVTPY------------FRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
                 +++    ++ Y            F  ML   ++ + +T  SLL AC     I++
Sbjct: 646 KMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKL 705

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWN-VMVSCYA 239
           G + H+ I K+GF    FV ++L+ +Y KCG+ ED   VF+E+   DL+ WN V+V C A
Sbjct: 706 GEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGC-A 763

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            N LG  AI +F  M +EG+  D  +F  ++ +C   G    G   H   + Q + +  L
Sbjct: 764 QNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEG-WAHFNSMTQKYGIMPL 822

Query: 300 V--ATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMV 336
           V   T +VD+  + G + +A  + + M  K + V W  ++
Sbjct: 823 VYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALL 862



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 183/392 (46%), Gaps = 52/392 (13%)

Query: 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
           G+ G VE+ARRVF+E++ RD+V WN M++ Y+ N   D A  +F+    + ++    T++
Sbjct: 182 GRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWT 237

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK 327
            L+      G  +  R+    V +   + +V+   +++  Y +NG++ +A ++FD M  K
Sbjct: 238 ILLTGYAKEGRIEEARE----VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK 293

Query: 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS--------------------------FC 361
           NV SWN++V G+       EA +L   M + +                           C
Sbjct: 294 NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMC 353

Query: 362 -----PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                PD+     +LS+   L        +   AIK G +  + + +A++NAY++ GS+ 
Sbjct: 354 RTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLD 413

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            A+  F ++ E +  +WT++I A+A  G   ++I+++E++    V   +     +++A +
Sbjct: 414 LAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKT----AMMTAYA 469

Query: 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL 536
             G + +    F+ +++     P+   +  +     + G+L EA DL   MP++  +   
Sbjct: 470 QVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWA 524

Query: 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568
               G  +   S    + A E L+EL  S  V
Sbjct: 525 AMIAGFVQNEES----REALELLIELHRSGSV 552



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 224/503 (44%), Gaps = 58/503 (11%)

Query: 34  ITNAQKHDRSVLSSQLRNSGTIHESTHSAHSFYS-QALKVSAKFG--------FLQQGKQ 84
           + + + H  +  S +L N+   +   +S +S  S + L   +K          +LQQ K 
Sbjct: 94  VLSQEGHPIAFFSEKLNNTRRRYSRVYSLYSHDSLKHLTSQSKLNTRHARWMDYLQQFKF 153

Query: 85  LHSHIMKLGLCNKLSLQNQVLHVYVKCKAF------DDMEKLFDEMRVRNIVTWNTLISG 138
           +  H  K G  NK + Q  +     + +        ++  ++F+EM  R++V+WN++I+G
Sbjct: 154 VIRH--KSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMING 211

Query: 139 IIN--------------CGGNV-------TPYFRRMLLDNVR--------LDHITFNSLL 169
                             G N+       T Y +   ++  R         + +++N+++
Sbjct: 212 YSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMI 271

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
              VQ  D++  R+L   + +     N    +++V  Y  C  + +AR +FD++  R+ V
Sbjct: 272 SGYVQNGDLKNARKLFDEMPEK----NVASWNSVVTGYCHCYRMSEARELFDQMPERNSV 327

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLV 289
            W VM+S Y        A  VF  M     + D   F  ++++   L   +L   +  + 
Sbjct: 328 SWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIA 387

Query: 290 IKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349
           IK  ++ DV+V +++++ Y +NG++D A   F+ M  +N  SW TM+  F Q G   +A+
Sbjct: 388 IKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAI 447

Query: 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409
           +L   + + +      T  +++++   +    + R +    +   V A+    NA+I  Y
Sbjct: 448 QLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEILNPNVVAW----NAIIAGY 499

Query: 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469
           ++ G +  A   F  +   +  +W ++I  +  +  S+E++E+  ++      P   +F 
Sbjct: 500 TQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFT 559

Query: 470 EVLSACSHGGLVSEGLRYFNLMI 492
             LSAC++ G V  G    +L I
Sbjct: 560 SALSACANIGDVEIGRVIHSLAI 582


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 311/557 (55%), Gaps = 7/557 (1%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           K   L++G++LH H++  G    + L+  +L +Y KC + DD +++F+ M ++++  W++
Sbjct: 22  KLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSS 81

Query: 135 LISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +IS     G        +RRM+ + V  + +TF   L  C     +  GR +H  IL   
Sbjct: 82  IISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASK 141

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              +  +  +L+++Y KC  + +AR+VF+ +  R++  +  M+S Y        A+ +F+
Sbjct: 142 VPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFS 201

Query: 253 LM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311
            M ++E ++ + +TF++++ +   LG+ + GR++H  +  + FD +V+V  +LV MY K 
Sbjct: 202 RMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKC 261

Query: 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
           G+  +A +VFD MTA+NV+SW +M+  + Q+G+ +EA+ L + M      P  V+ +S L
Sbjct: 262 GSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSAL 318

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV 431
           ++C  L    E R++H   ++  + A   +E +L++ Y++CGS+  A + F  +K  D  
Sbjct: 319 NACALLGALDEGREIHHRVVEAHL-ASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAF 377

Query: 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           +  ++I A+  HG  K+++ ++ +M    +  D I F+ VL ACSH  LV++   +F  +
Sbjct: 378 SCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSL 437

Query: 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
           + D+ ++P  EHY C+ D+LGR G L +A +L+ +MP +  +      +  CK HG +  
Sbjct: 438 VMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNR 497

Query: 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAG 611
            + AA K+ EL P++ + Y  +SN+YA+ + + D  R+RK M +         S+IEI  
Sbjct: 498 GERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDN 557

Query: 612 EIHTFVSSDRSHPQAVH 628
           E+H F S  R   Q  H
Sbjct: 558 ELHMFTSGGRDEQQEGH 574



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 206/388 (53%), Gaps = 7/388 (1%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D     SL+ AC +   +E GRRLH  ++  GF  +  + +AL+ +Y KCG ++DA+RVF
Sbjct: 9   DKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVF 68

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           + +  +DL  W+ ++S YA    G+ A+ ++  M  EG++ +  TF+  +  C ++    
Sbjct: 69  EGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLA 128

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR IH  ++      D ++  SL++MY K   + +A +VF+GM A+NV S+  M+  + 
Sbjct: 129 DGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYV 188

Query: 341 QNGDGREAVKLLRDMLQ-GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
           Q G+  EA++L   M +  +  P+  T A+IL +   L    + R+VH +    G    +
Sbjct: 189 QAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNV 248

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            ++NAL+  Y KCGS   A + F S+   ++++WTS+I AYA HG  +E++ +F++M   
Sbjct: 249 VVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM--- 305

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            V P  ++F   L+AC+  G + EG    + ++  +   P  E  T L  +  R G L +
Sbjct: 306 DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYARCGSLDD 363

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHG 547
           A  +   M     + +  A I A   HG
Sbjct: 364 ARRVFNRMKTRD-AFSCNAMIAAFTQHG 390



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 198/384 (51%), Gaps = 9/384 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++ AL   A    L  G+ +H  I+   +     LQ+ +L++Y+KC    +  K+F+ M+
Sbjct: 114 FACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 173

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRM-LLDNVRLDHITFNSLLRACVQADDIEVGR 182
            RN+ ++  +IS  +  G        F RM  ++ +  +  TF ++L A     ++E GR
Sbjct: 174 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 233

Query: 183 RLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242
           ++H  +   GF  N  V +ALV +YGKCG   +AR+VFD +  R+++ W  M++ YA + 
Sbjct: 234 KVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHG 293

Query: 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT 302
               A+ +F  M +E       +FSS +N+C  LG+   GR+IH  V++        + T
Sbjct: 294 NPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVEAHL-ASPQMET 349

Query: 303 SLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362
           SL+ MYA+ G++DDA RVF+ M  ++  S N M+  F Q+G  ++A+++ R M Q     
Sbjct: 350 SLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPA 409

Query: 363 DEVTLASILSSCGSLSISCETRQ-VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           D +T  S+L +C   S+  + R    +  + +GV   +     +++   + G +  A + 
Sbjct: 410 DGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEEL 469

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHG 444
             ++  + D V W +++     HG
Sbjct: 470 VETMPYQTDAVAWMTLLSGCKRHG 493



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 148/278 (53%), Gaps = 8/278 (2%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M   G+  D F  +SLV +C  L + + GR++H  +I   F  D+ + T+L+ MYAK G+
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           +DDA RVF+GM  K++ +W++++  + + G G  AV L R M+     P+ VT A  L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S++   + R +H   + + V     ++++L+N Y KC  +  A + F  +K  ++ ++
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
           T++I AY   G   E++E+F +M    A+ P++  F  +L A    G + +G +    + 
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 493 S---DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
           S   D +++  +     L  + G+ G  VEA  +  SM
Sbjct: 241 SRGFDTNVVVQN----ALVTMYGKCGSPVEARKVFDSM 274


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 293/546 (53%), Gaps = 34/546 (6%)

Query: 119 KLFDEMRVRNIVTWNTLISGII---NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
           K+ + ++  N+ +WN +I G +   N    +  Y R +     R D+ T++ L + C   
Sbjct: 108 KILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANL 167

Query: 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV 235
               +G  +   +LK+GF  + ++ + ++ +    G    A +VFDE   RDLV WN ++
Sbjct: 168 VLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLI 227

Query: 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295
           + Y        A+ ++  M  E +K D  T   +V++C  L S KLGR+IH  + +   +
Sbjct: 228 NGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLN 287

Query: 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG----DGR----- 346
           L + +  +L+DMY K G+++    +FD M  K VVSW TM+VG+ +NG     G+     
Sbjct: 288 LKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDM 347

Query: 347 ----------------------EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR 384
                                 EA++L R+M   +  PD+VT+   LS+C  L       
Sbjct: 348 PEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGM 407

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
             H Y  K+ +   +++  ALI+ Y+KCG++  ALQ F  +   + +TWT+IIG  A +G
Sbjct: 408 WTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYG 467

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504
              ++I  F KM+   + PD I FL VL+AC HGGLV EG +YF+ M S +++ P  +HY
Sbjct: 468 NVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHY 527

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564
           +C+ +LLGR GLL EA +L+ +MP+E  +   GA   AC +H ++ + + AA KLL+L+P
Sbjct: 528 SCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDP 587

Query: 565 SKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHP 624
                Y L++N+Y     W +   +RKMM +    K PG S IE+ G I+ F+  D+SHP
Sbjct: 588 HDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHP 647

Query: 625 QAVHMY 630
           Q+  +Y
Sbjct: 648 QSEQIY 653



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 197/416 (47%), Gaps = 41/416 (9%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS   KV A       G ++   ++K+G    + L N ++H+ V         K+FDE  
Sbjct: 157 YSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGC 216

Query: 126 VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           VR++V+WN+LI+G +           +++M+ ++V+ D +T   ++ AC Q + +++GR 
Sbjct: 217 VRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGRE 276

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H +I + G  L   + +AL+D+Y KCG +E  + +FD +  + +V W  M+  YA N L
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGL 336

Query: 244 GD-------------------------------GAIAVFNLMRLEGMKGDYFTFSSLVNS 272
            D                                A+ +F  M+   MK D  T    +++
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSA 396

Query: 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSW 332
           C  LG+   G   H  + K +  LDV + T+L+DMYAK GN+  A +VF+ M  +N ++W
Sbjct: 397 CSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTW 456

Query: 333 NTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK 392
             ++ G    G+  +A+     M+     PDE+T   +L++C    +  E R+   Y  +
Sbjct: 457 TAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRK---YFDQ 513

Query: 393 NGVQAFLSIE----NALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFH 443
              +  LS +    + ++N   + G +  A +   ++  E D + W ++  A   H
Sbjct: 514 MKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIH 569



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 104/213 (48%), Gaps = 6/213 (2%)

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYA--KNGNIDDACRVFDGMT 325
           SL+ +C +    K   QI   +I     LD   ++ L+   A  ++ N+D   ++ + + 
Sbjct: 58  SLLENCKSFSQLK---QIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQ 114

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETR 384
             NV SWN ++ G  ++ + ++ + L + ML  + C PD  T + +   C +L +S    
Sbjct: 115 NPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGF 174

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444
           ++    +K G    + + N +I+     G    A + F      DLV+W S+I  Y    
Sbjct: 175 EILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRR 234

Query: 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
             +E++ ++++M++  V+PD +  + V+SAC+ 
Sbjct: 235 QPREAMGIYQQMITEHVKPDEVTMIGVVSACAQ 267


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 296/532 (55%), Gaps = 3/532 (0%)

Query: 80  QQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGI 139
           +QG  +H+H++  G  + L L  +++  YVK         +FD M  R++V+W  ++SG 
Sbjct: 168 KQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGY 227

Query: 140 INCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
              G     +  F  M    V+ +  T+ S LRAC     +++G ++   I K  F  N 
Sbjct: 228 SQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENL 287

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
           FV SALVD + KCG +EDA  +F  ++ RD+V WN M+  YA+    D +  +F  M   
Sbjct: 288 FVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG 347

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           G+  D +T  S++ +    G   +  QIHG++ +  +    +V   L++ YAKNG++  A
Sbjct: 348 GLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 407

Query: 318 CRVFDGMTAKNVVSWNTMVVGFGQNG-DGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
             +  GM  K++ S   ++ G+   G    +A+ L ++M Q +   D+V L S+L+ C +
Sbjct: 408 KDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICAN 467

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L+      Q+HA+A+K      +++ NALI+ Y+K G I  A + F  ++E ++++WTS+
Sbjct: 468 LASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSL 527

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I  YA HG    ++ +++KM S   +P+ + FL +L ACSH GL +EG   FN M++ Y+
Sbjct: 528 ISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYN 587

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           I P +EHY+C+ DL  R GLL EAY+LL  + I+  +   GA +GA  ++G + L K AA
Sbjct: 588 IKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAA 647

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
             L  ++P   VNY +++++Y++   W D  ++RK+M +    K  G S+ +
Sbjct: 648 SNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQ 699



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 220/463 (47%), Gaps = 31/463 (6%)

Query: 44  VLSSQLRNSGTIHESTHSAHSF-YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQN 102
           VL S +R+ G        A+ F Y  AL+       L  G Q+   I K      L +++
Sbjct: 238 VLFSDMRHCGV------KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 291

Query: 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRL 160
            ++  + KC   +D   LF  M  R++V+WN +I G    G     +  FR ML   +  
Sbjct: 292 ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP 351

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T  S+LRA  +   + +  ++H  I ++G+G    V+  L++ Y K G +  A+ + 
Sbjct: 352 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 411

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGD-GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
             +L +DL     +++ YA   +    A+ +F  M    +  D     S++N C  L S 
Sbjct: 412 KGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASF 471

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
            LG QIH   +K     DV +  +L+DMYAK+G I+DA R FD M  KNV+SW +++ G+
Sbjct: 472 ALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGY 531

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE-----TRQVHAYAIKNG 394
            ++G G  AV L + M    F P++VT  S+L +C    ++ E        V+ Y IK  
Sbjct: 532 AKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPR 591

Query: 395 VQAFLSIENALINAYSKCGSIAGA--LQCFGSVKEPDLVTWTSIIGA---YAFHGLSKES 449
            + +    + +++ +++ G +  A  L C   +K  +   W +I+GA   Y +  L KE+
Sbjct: 592 AEHY----SCMVDLFARQGLLEEAYNLLCKIDIKH-NASLWGAILGASSIYGYMSLGKEA 646

Query: 450 IEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLM 491
                 M     +P+ S+ ++ + S  S  GL  +  +   LM
Sbjct: 647 ASNLFNM-----QPENSVNYVVLASIYSAAGLWDDAWKIRKLM 684



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 199/408 (48%), Gaps = 4/408 (0%)

Query: 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLW 231
           C+     + G  +H+ ++  GFG +  +++ L+  Y K G V  AR VFD +  R +V W
Sbjct: 161 CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSW 220

Query: 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
             MVS Y+ N   + A  +F+ MR  G+K + FT+ S + +C +L    +G Q+ G + K
Sbjct: 221 TAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQK 280

Query: 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL 351
             F  ++ V ++LVD ++K G ++DA  +F  M  ++VVSWN M+ G+   G   ++  +
Sbjct: 281 GRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCM 340

Query: 352 LRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411
            R ML+G   PD  TL S+L +           Q+H    + G  ++  +   LINAY+K
Sbjct: 341 FRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAK 400

Query: 412 CGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL-SKESIEVFEKMLSHAVRPDSIAFLE 470
            GS+  A      + + DL + T++I  YA  G+ S +++++F++M    +  D +    
Sbjct: 401 NGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCS 460

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +L+ C++    + G +     +  Y    D      L D+  + G + +A      M  E
Sbjct: 461 MLNICANLASFALGTQIHAFALK-YQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME-E 518

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578
               +  + I     HG  G    +  K +E +  KP +   +S ++A
Sbjct: 519 KNVISWTSLISGYAKHG-YGHMAVSLYKKMESKGFKPNDVTFLSLLFA 565


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 211/615 (34%), Positives = 327/615 (53%), Gaps = 56/615 (9%)

Query: 55  IHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK-- 112
           +H  +   HSF  Q LK       L+ GK LH+  +K  +     L N  L +Y KC+  
Sbjct: 1   MHHFSSLLHSF-RQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRL 59

Query: 113 -----AFDDME------------------------KLFDEMRVRNIVTWNTLISGIINCG 143
                 FD                           +LFDEM   + V++NTLI+      
Sbjct: 60  SAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYAR-R 118

Query: 144 GNVTPYF------RRMLLDNVRLDHITFNSLLRACVQADDIEVG--RRLHSFILKVGFGL 195
           G+  P F      R   LD   +D  T + ++ AC     I VG  R+LH+  L V  GL
Sbjct: 119 GDTQPAFQLFLEMREAFLD---MDGFTLSGIITAC----GINVGLIRQLHA--LSVVTGL 169

Query: 196 NCFVS--SALVDLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNCLGDGAIAVFN 252
           + +VS  +AL+  Y K GF+++ARR+F  +   RD V WN MV  Y  +  G  A+ ++ 
Sbjct: 170 DSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYL 229

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            M + G+  D FT +S++ +   +     G Q H  +IK  +  +  V + L+D+Y+K G
Sbjct: 230 EMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG 289

Query: 313 NIDDACR-VFDGMTAKNVVSWNTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASI 370
                CR VFD ++  ++V WNTM+ G+    D   EA++  R +      PD+ +L  +
Sbjct: 290 GCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCV 349

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPD 429
           +S+C ++S   + RQVH  A+K  + +  +S+ NALI  YSKCG++  A   F ++ E +
Sbjct: 350 ISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHN 409

Query: 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
            V++ S+I  YA HG+  +S+ +F++ML     P +I F+ VL+AC+H G V +G  YFN
Sbjct: 410 TVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFN 469

Query: 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
           +M   + I P++ H++C+ DLLGR G L EA  L+ ++P +P      A +GAC++HG++
Sbjct: 470 MMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNV 529

Query: 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609
            LA  AA +LL+L+P     Y +++N+Y+      D A +RK+MRD    K PGCSWIE+
Sbjct: 530 ELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEV 589

Query: 610 AGEIHTFVSSDRSHP 624
              IH FV+ D  HP
Sbjct: 590 NRRIHIFVAEDTFHP 604


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/496 (35%), Positives = 295/496 (59%), Gaps = 1/496 (0%)

Query: 148 PYFRRMLLDNVRLDHIT-FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
           P  + ++   +R  H++    LL++  +      G   H+ I++VG   +   S+ L+++
Sbjct: 5   PSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNM 64

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           Y KCG VE AR++FDE+  R LV WN MV  +  N   + A+ +F  M+ EG     FT 
Sbjct: 65  YSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTV 124

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           SS+V +C         +Q+HG  +K + D +V V T+L+D+YAK G + DA  VF+ M  
Sbjct: 125 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 184

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           ++ V+W++MV G+ QN    EA+ L           ++ T++S LS+C + +   E +QV
Sbjct: 185 RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQV 244

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
            A + K G+ + + + ++LI+ Y+KCG I  A   F SV+E ++V W +I+  ++ H  S
Sbjct: 245 QAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRS 304

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
            E++  FEKM    + P+ I ++ VLSACSH GLV +G +YF+LMI  +++ P+  HY+C
Sbjct: 305 LEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSC 364

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + D+LGR GLL EA D +  MP +  +   G+ + +C+++ ++ LA+ AA+ L E+EP  
Sbjct: 365 MVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHN 424

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
             N+ L+SN+YA+   W +VAR R +++++   K  G SWIEI  ++H+F+  +R+HP+ 
Sbjct: 425 AGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRI 484

Query: 627 VHMYAMLCTVFGLMEE 642
           V +Y  L  + G M++
Sbjct: 485 VEIYLKLEDLVGEMKK 500



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 2/318 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+     +G   H+ I+++GL       N ++++Y KC   +   KLFDEM VR++
Sbjct: 27  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 86

Query: 130 VTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WNT++      G        F +M  +       T +S++ AC     +   ++LH F
Sbjct: 87  VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 146

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            LK     N FV +AL+D+Y KCG V+DA  VF+ +  R  V W+ MV+ Y  N L + A
Sbjct: 147 ALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEA 206

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F+  +  G++ + FT SS +++C    +   G+Q+  +  K     ++ V +SL+DM
Sbjct: 207 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDM 266

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G I++A  VF  +  KNVV WN ++ GF ++    EA+     M Q   CP+++T 
Sbjct: 267 YAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITY 326

Query: 368 ASILSSCGSLSISCETRQ 385
            S+LS+C  L +  + R+
Sbjct: 327 ISVLSACSHLGLVEKGRK 344



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +GKQ+ +   K G+ + + + + ++ +Y KC   ++   +F  +  +N+V WN ++SG  
Sbjct: 240 EGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFS 299

Query: 141 NCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV-GFGLNC 197
               ++    YF +M    +  + IT+ S+L AC     +E GR+    +++V     N 
Sbjct: 300 RHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNV 359

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSCYALNCLGDGAIAVFNLMR 255
              S +VD+ G+ G + +A+   D +       +W +++ SC     L    +A  +L  
Sbjct: 360 LHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFE 419

Query: 256 LE 257
           +E
Sbjct: 420 IE 421


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 269/460 (58%), Gaps = 1/460 (0%)

Query: 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241
           R++H+ ++  G   +  +++ L+  Y +   ++DA  +FD +  RD   W+VMV  +A  
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA 301
               G  A F  +   G+  D +T   ++ +C      ++GR IH +V+K     D  V 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361
            SLVDMYAK   ++DA R+F+ M +K++V+W  M+  +  + +  E++ L   M +    
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVV 198

Query: 362 PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
           PD+V + +++++C  L      R  + Y ++NG    + +  A+I+ Y+KCGS+  A + 
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREV 258

Query: 422 FGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481
           F  +KE ++++W+++I AY +HG  K++I++F  MLS A+ P+ + F+ +L ACSH GL+
Sbjct: 259 FDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLI 318

Query: 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIG 541
            EGLR+FN M  ++ + PD +HYTC+ DLLGR G L EA  L+ +M +E       A +G
Sbjct: 319 EEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLG 378

Query: 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601
           AC++H  + LA+ AA  LLEL+P  P +Y L+SN+YA    W  VA+ R MM      K+
Sbjct: 379 ACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKI 438

Query: 602 PGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641
           PG +WIE+  + + F   DRSHPQ+  +Y ML ++   +E
Sbjct: 439 PGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLE 478



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 216/388 (55%), Gaps = 31/388 (7%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINC 142
           +Q+H+H++  G    L + N++L+ Y + KA DD   LFD + +R+  TW+ ++ G    
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 143 GGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVS 200
           G +   Y  FR +L   V  D+ T   ++R C    D+++GR +H  +LK G   + FV 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 201 SALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK 260
           ++LVD+Y KC  VEDA+R+F+ +L +DLV W VM+  YA +C    ++ +F+ MR EG+ 
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVV 198

Query: 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320
            D     ++VN+C  LG+    R  +  +++  F LDV++ T+++DMYAK G+++ A  V
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREV 258

Query: 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380
           FD M  KNV+SW+ M+  +G +G G++A+ L   ML  +  P+ VT  S+L +C      
Sbjct: 259 FDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACS----- 313

Query: 381 CETRQVHAYAIKNGVQAFLSI--ENA----------LINAYSKCGSIAGALQCFGSVK-E 427
                 HA  I+ G++ F S+  E+A          +++   + G +  AL+   ++  E
Sbjct: 314 ------HAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVE 367

Query: 428 PDLVTWTSIIGAYAFHGLSKESIEVFEK 455
            D   W++++GA   H      +E+ EK
Sbjct: 368 KDERLWSALLGACRIHS----KMELAEK 391



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 141/261 (54%), Gaps = 3/261 (1%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQ G+ +H  ++K GL +   +   ++ +Y KC   +D ++LF+ M  +++VTW  +I  
Sbjct: 117 LQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGA 176

Query: 139 IINCGGNVT-PYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNC 197
             +C    +   F RM  + V  D +   +++ AC +   +   R  + +I++ GF L+ 
Sbjct: 177 YADCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDV 236

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE 257
            + +A++D+Y KCG VE AR VFD +  ++++ W+ M++ Y  +  G  AI +F++M   
Sbjct: 237 ILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSC 296

Query: 258 GMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
            +  +  TF SL+ +C   G  + G R  + +  + +   DV   T +VD+  + G +D+
Sbjct: 297 AILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDE 356

Query: 317 ACRVFDGMTA-KNVVSWNTMV 336
           A R+ + MT  K+   W+ ++
Sbjct: 357 ALRLIEAMTVEKDERLWSALL 377



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           VL  ++R  G + +            +   AK G + + +  + +I++ G    + L   
Sbjct: 187 VLFDRMREEGVVPDKVAMV-----TVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTA 241

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLD 161
           ++ +Y KC + +   ++FD M+ +N+++W+ +I+  G    G +    F  ML   +  +
Sbjct: 242 MIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPN 301

Query: 162 HITFNSLLRACVQADDIEVGRR-LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
            +TF SLL AC  A  IE G R  +S   +     +    + +VDL G+ G +++A R+ 
Sbjct: 302 RVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLI 361

Query: 221 DEVLC-RDLVLWNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
           + +   +D  LW+ ++ +C   + +     A  +L+ L+    G Y   S++    G
Sbjct: 362 EAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAG 418


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/580 (29%), Positives = 319/580 (55%), Gaps = 8/580 (1%)

Query: 53  GTIHESTHSAHSFYSQALKVS-AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKC 111
           G + E    A  F   +L  +  K   L++G++LH H++  G    + L+  +L +Y KC
Sbjct: 19  GEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKC 78

Query: 112 KAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLL 169
            + DD +++F+ M ++++  W+++I+     G        +RRM+ + V  + +TF   L
Sbjct: 79  GSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACAL 138

Query: 170 RACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV 229
             C     +  GR +H  IL      +  +  +L+++Y KC  + +AR+VF+ +  R++ 
Sbjct: 139 GGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVR 198

Query: 230 LWNVMVSCYALNCLGDGAIAVFNLM-RLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288
            +  M+S Y        A+ +F+ M ++E ++ + +TF++++ +   LG+ + GR++H  
Sbjct: 199 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 258

Query: 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348
           +  + FD +V+V  +LV MY K G+  +A +VFD MTA+NV+SW +M+  + Q+G+ +EA
Sbjct: 259 LASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEA 318

Query: 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408
           + L + M      P  V+ +S L++C  L    E R++H   ++  + A   +E +L++ 
Sbjct: 319 LNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANL-ASPQMETSLLSM 374

Query: 409 YSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF 468
           Y++CGS+  A + F  +K  D  +  ++I A+  HG  K+++ ++ KM    +  D I F
Sbjct: 375 YARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITF 434

Query: 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528
           + VL ACSH  LV++   +   ++ D+ ++P  EHY C+ D+LGR G L +A +L+ +MP
Sbjct: 435 VSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMP 494

Query: 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588
            +  +      +  CK HG +   + AA K+ EL P++ + Y  +SN+YA+ + + D  R
Sbjct: 495 YQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARR 554

Query: 589 LRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVH 628
           +RK M +    +    S+IEI  E+H F S  R   Q  H
Sbjct: 555 VRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGH 594



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 156/294 (53%), Gaps = 12/294 (4%)

Query: 242 CLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297
           C+ +G    A+ ++  M   G+  D F  +SLV +C  L + + GR++H  +I   F  D
Sbjct: 5   CVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTD 64

Query: 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357
           + + T+L+ MYAK G++DDA RVF+GM  K++ +W++++  + + G G  AV L R M+ 
Sbjct: 65  IPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIA 124

Query: 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
               P+ VT A  L  C S++   + R +H   + + V     ++++L+N Y KC  +  
Sbjct: 125 EGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVE 184

Query: 418 ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACS 476
           A + F  +K  ++ ++T++I AY   G   E++E+F +M    A+ P++  F  +L A  
Sbjct: 185 ARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVE 244

Query: 477 HGGLVSEGLRYFNLMIS---DYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
             G + +G +    + S   D +++  +     L  + G+ G  VEA  +  SM
Sbjct: 245 GLGNLEKGRKVHRHLASRGFDTNVVVQN----ALVTMYGKCGSPVEARKVFDSM 294



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 34/249 (13%)

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+    + G   +A++L  +M +     D+  + S++++C  L    E R++H + I  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
            +  + +E AL+  Y+KCGS+  A + F  ++  DL  W+SII AYA  G  + ++ ++ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGL----RYFNLMISDYHILPDS--------- 501
           +M++  V P+ + F   L  C+    +++G     R     +    +L DS         
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 502 -----------------EHYTCLTDLLGRVGLLVEAYDLLASM----PIEPRSDTLGAFI 540
                              YT +     + G   EA +L + M     IEP + T    +
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 541 GACKVHGSI 549
           GA +  G++
Sbjct: 241 GAVEGLGNL 249


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 281/465 (60%), Gaps = 6/465 (1%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           +N++L  C++   I  G+R+H+ ++K  +    ++ + L+  Y KC  + DAR VFD + 
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK--LG 282
            R++V W  M+S Y+       A+++F  M   G + + FTF++++ SC  +GSS   LG
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSC--IGSSGFVLG 178

Query: 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN 342
           RQIH  +IK +++  V V +SL+DMYAK+G I +A  +F  +  ++VVS   ++ G+ Q 
Sbjct: 179 RQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQL 238

Query: 343 GDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402
           G   EA++L R + +     + VT  S+L++   L+     +QVH + +++ V +++ ++
Sbjct: 239 GLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQ 298

Query: 403 NALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKML-SHAV 461
           N+LI+ YSKCG++  A + F ++ E  +++W +++  Y+ HG  +E +E+F  M+  + V
Sbjct: 299 NSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKV 358

Query: 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS-DYHILPDSEHYTCLTDLLGRVGLLVEA 520
           +PDS+  L VLS CSHGGL  +G+  F  M S    + PDS+HY C+ D+LGR G +  A
Sbjct: 359 KPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAA 418

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
           ++ +  MP EP +   G  +GAC VH ++ + ++   +LL++EP    NY ++SN+YAS 
Sbjct: 419 FEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASA 478

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQ 625
             W DV  LR +M      K PG SWIE+   +HTF +SD SHP+
Sbjct: 479 GRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPR 523



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 209/385 (54%), Gaps = 8/385 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L    +   +++G+++H+H++K      + L+ +++  YVKC +  D   +FD M 
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            RN+V+W  +IS     G        F +ML      +  TF ++L +C+ +    +GR+
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS I+K+ +  + +V S+L+D+Y K G + +AR +F  +  RD+V    ++S YA   L
Sbjct: 181 IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGL 240

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F  ++ EGM+ +Y T++S++ +   L +   G+Q+H  +++      V++  S
Sbjct: 241 DEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNS 300

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML-QGSFCP 362
           L+DMY+K GN+  A R+FD +  + V+SWN M+VG+ ++G+GRE ++L   M+ +    P
Sbjct: 301 LIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKP 360

Query: 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNG---VQAFLSIENALINAYSKCGSIAGAL 419
           D VT+ ++LS C    +  +   +  Y + +G   VQ        +++   + G +  A 
Sbjct: 361 DSVTVLAVLSGCSHGGLEDKGMDIF-YDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAF 419

Query: 420 QCFGSVK-EPDLVTWTSIIGAYAFH 443
           +    +  EP    W  ++GA + H
Sbjct: 420 EFVKKMPFEPSAAIWGCLLGACSVH 444



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 147/278 (52%), Gaps = 9/278 (3%)

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M L G+  ++  +++++N C    + + G+++H  +IK  +   V + T L+  Y K  +
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           + DA  VFD M  +NVVSW  M+  + Q G   +A+ L   ML+    P+E T A++L+S
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C   S     RQ+H++ IK   +A + + ++L++ Y+K G I  A   F  + E D+V+ 
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM-- 491
           T+II  YA  GL +E++E+F ++    ++ + + +  VL+A S    +  G +  N +  
Sbjct: 229 TAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLR 288

Query: 492 --ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
             +  Y +L +S     L D+  + G L  A  +  ++
Sbjct: 289 SEVPSYVVLQNS-----LIDMYSKCGNLTYARRIFDTL 321



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 8/226 (3%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E   S +  Y+  L   +    L  GKQ+H+H+++  + + + LQN ++ +Y KC     
Sbjct: 254 EGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTY 313

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDN-VRLDHITFNSLLRACV 173
             ++FD +  R +++WN ++ G    G    V   F  M+ +N V+ D +T  ++L  C 
Sbjct: 314 ARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCS 373

Query: 174 QADDIEVGRRLHSFIL--KVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVL 230
                + G  +   +   K+    +      +VD+ G+ G VE A     ++       +
Sbjct: 374 HGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAI 433

Query: 231 WNVMV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
           W  ++ +C   + L  G      L+++E    G+Y   S+L  S G
Sbjct: 434 WGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAG 479


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 209/659 (31%), Positives = 318/659 (48%), Gaps = 106/659 (16%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR------------- 125
           LQ  + +H +I+  G      + N+++ VY K    D   +LFDE+              
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 126 --------------------VRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHI 163
                               +R+ V +N +I+G    N G +    F +M  +  + D  
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 164 TFNSLLRA-CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG----FVEDARR 218
           T+ S+L    +  DD +   + H+  LK G G    VS+ALV +Y +C      +  AR+
Sbjct: 150 TYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARK 209

Query: 219 VFDEVLCRD--------------------------------LVLWNVMVSCYALNC-LGD 245
           VFD++  +D                                LV +N M+S Y +NC L  
Sbjct: 210 VFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGY-VNCGLYQ 268

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+ +   M   G++ D FT+ S++ +C      +LG+Q+H  V+++  D       SLV
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLV 327

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNT------------------------------- 334
            +Y K G  ++A  +F+ M AK++VSWN                                
Sbjct: 328 TLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMI 387

Query: 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
           M+ G  +NG G E +KL   M +  F P +   +  + SC  L   C  +Q HA  +K G
Sbjct: 388 MISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIG 447

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFE 454
             + LS  NALI  Y+KCG +  A Q F ++   D V+W ++I A   HG   E+++V+E
Sbjct: 448 FDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYE 507

Query: 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514
           +ML   +RPD I FL VL+ACSH GLV +G +YFN M + Y I P ++HY  L DLL R 
Sbjct: 508 EMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRS 567

Query: 515 GLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574
           G   EA  ++ S+P +P ++   A +  C+VHG++ L   AA+KL  L P     Y L+S
Sbjct: 568 GKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLS 627

Query: 575 NVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           N+YA+   W +VAR+RK+MRD    K   CSWIE+  ++HTF+  D SHP+A  +Y  L
Sbjct: 628 NMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYL 686



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 77/408 (18%)

Query: 156 DNVRLDHITFNSLLRACV--QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213
           D VR     + + LR C+  +   +++ R +H  I+  GF  +  + + L+D+Y K   +
Sbjct: 6   DLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSEL 65

Query: 214 EDARRVFDE---------------------------------VLCRDLVLWNVMVSCYAL 240
           + AR++FDE                                 V  RD V++N M++ ++ 
Sbjct: 66  DYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSH 125

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG-TLGSSKLGRQIHGLVIKQSFDLDVL 299
           N  G  AI +F  M+ EG K D FT++S++      +   K   Q H   +K        
Sbjct: 126 NNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTS 185

Query: 300 VATSLVDMYAKNGN----IDDACRVFDGMTAKNVVSWNTMVVGFGQNG------------ 343
           V+ +LV +Y++  +    +  A +VFD +  K+  SW TM+ G+ +NG            
Sbjct: 186 VSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM 245

Query: 344 -------------DG-------REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
                         G       +EA++++R M+      DE T  S++ +C +  +    
Sbjct: 246 DENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG 305

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           +QVHAY ++    +F   +N+L+  Y KCG    A   F  +   DLV+W +++  Y   
Sbjct: 306 KQVHAYVLRREDFSF-HFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSS 364

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLM 491
           G   E+  +F++M    +    ++++ ++S  +  G   EGL+ F+ M
Sbjct: 365 GHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKLFSCM 408



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 145/314 (46%), Gaps = 36/314 (11%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y   ++  A    LQ GKQ+H+++++    +     N ++ +Y KC  F++   +F++M 
Sbjct: 289 YPSVIRACANARLLQLGKQVHAYVLRREDFS-FHFDNSLVTLYYKCGKFNEARAIFEKMP 347

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSL-----------LRAC 172
            +++V+WN L+SG ++ G  G     F+ M   N+    I  + L           L +C
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 173 VQADDIEV--------------------GRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           ++ +  E                     G++ H+ ++K+GF  +    +AL+ +Y KCG 
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGV 467

Query: 213 VEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272
           VE+A++VF  + C D V WN +++    +  G  A+ V+  M  +G++ D  TF +++ +
Sbjct: 468 VEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTA 527

Query: 273 CGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS 331
           C   G    GR+  + +               L+D+  ++G   +A  + + +  K    
Sbjct: 528 CSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAE 587

Query: 332 -WNTMVVGFGQNGD 344
            W  ++ G   +G+
Sbjct: 588 IWEALLSGCRVHGN 601



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 146/357 (40%), Gaps = 79/357 (22%)

Query: 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA----------- 326
           S +L R +HG +I   F     +   L+D+Y K+  +D A ++FD ++            
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 327 ----------------------KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
                                 ++ V +N M+ GF  N DG  A+ L   M    F PD+
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 365 VTLASILSSCGSLSISCETR--QVHAYAIKNGVQAFLSIENALINAYSKCGS----IAGA 418
            T AS+L+   +L +  E +  Q HA A+K+G     S+ NAL++ YS+C S    +  A
Sbjct: 149 FTYASVLAGL-ALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSA 207

Query: 419 LQCFGSVKEPDLVTWTSIIGAYAFH--------------------------------GLS 446
            + F  + E D  +WT+++  Y  +                                GL 
Sbjct: 208 RKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLY 267

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG--LRYFNLMISDYHILPDSEHY 504
           +E++E+  +M+S  +  D   +  V+ AC++  L+  G  +  + L   D+    D+   
Sbjct: 268 QEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNS-- 325

Query: 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561
             L  L  + G   EA  +   MP +    +  A +      G IG AK   +++ E
Sbjct: 326 --LVTLYYKCGKFNEARAIFEKMPAKDLV-SWNALLSGYVSSGHIGEAKLIFKEMKE 379



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S A+K  A  G    G+Q H+ ++K+G  + LS  N ++ +Y KC   ++ +++F  M 
Sbjct: 420 FSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMP 479

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V+WN LI+ +   G  V     +  ML   +R D ITF ++L AC  A  ++ GR+
Sbjct: 480 CLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRK 539

Query: 184 LHS---FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS-CY 238
             +    + ++  G + +  + L+DL  + G   +A  + + +  +    +W  ++S C 
Sbjct: 540 YFNSMETVYRIPPGADHY--ARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCR 597

Query: 239 ALNCLGDGAIAVFNLMRL-EGMKGDYFTFSSLVNSCG 274
               +  G IA   L  L     G Y   S++  + G
Sbjct: 598 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATG 634


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/581 (30%), Positives = 311/581 (53%), Gaps = 3/581 (0%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM-R 125
           S  L    K   +++G+ +     +LG    + +   ++H++ KC   ++ E +F  M  
Sbjct: 72  SSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGA 131

Query: 126 VRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +R+I++   +I   +  G N      + +M    +  D  T+ ++L AC   D +  G+ 
Sbjct: 132 MRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKH 191

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  IL+     N  V +AL+ +Y KCG ++D++ +F  +  +D+V WN M++ Y L   
Sbjct: 192 IHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGH 251

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
              A ++F+ M   G   D +TFSS++ +C +    + GR +H  +  + FD D  +  +
Sbjct: 252 DKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNN 311

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+ M+ + G+++ A R F  +  K + +WNTM+  + Q   G++A+ L ++ML   F PD
Sbjct: 312 LISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPD 371

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423
             T +S++ SC SL    E + +H  +   G +  + +  AL+N Y+KCGS+A A + F 
Sbjct: 372 RFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFD 431

Query: 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483
            +   D+V+W+++I A A HG ++E++E+   M    +  + +    VL ACSHGG + E
Sbjct: 432 GISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYE 491

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           G+ YF  +  D+ I  D E+     DLLGR G L EA  +L +MP +     L   +G C
Sbjct: 492 GIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGC 551

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           KVHG +   K   ++++ LEP  P +Y L++N+YA+   W DVA+LR+ MR     +  G
Sbjct: 552 KVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTG 611

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           CS IE   +I+ F   D S+P+ + + A L  ++  M+E  
Sbjct: 612 CSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEE 652



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 238/469 (50%), Gaps = 18/469 (3%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDN 157
           L N ++ +Y KCK+ +D  ++FD ++ RN  +W+ L+   +           ++ M+   
Sbjct: 4   LANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKE 63

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           + +D  T +S+L AC +  D+E GR +     ++GF  +  V+++L+ L+ KCG +E+A 
Sbjct: 64  ISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAE 123

Query: 218 RVFDEV-LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
            VF  +   RD++    M+  Y  +   D A+  +  MR +G++ D FT+++++ +C + 
Sbjct: 124 SVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSP 183

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
                G+ IH  +++     ++ V  +L+ MYAK G++ D+  +F  M  K+VVSWN M+
Sbjct: 184 DFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMI 243

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
             +   G  ++A  L   M      PD  T +SIL +C S     + R +H      G  
Sbjct: 244 AAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFD 303

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
              +++N LI+ +++CGS+  A + F S+++ +L  W +++ AYA     K+++ +++ M
Sbjct: 304 RDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNM 363

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
           L     PD   F  V+ +C+  G + EG ++ +   +      D    T L ++  + G 
Sbjct: 364 LLEGFTPDRFTFSSVVDSCASLGALREG-KFIHECSTSCGFEKDVILGTALVNMYAKCGS 422

Query: 517 LVEA---YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562
           L +A   +D +++  +   S    A I A   HG        AE+ LEL
Sbjct: 423 LADAKKSFDGISNKDVVSWS----AMIAASAQHGH-------AEEALEL 460



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 176/311 (56%), Gaps = 2/311 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   +   FL  GK +H HI++      +S++N ++ +Y KC +  D + LF  M 
Sbjct: 173 YAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMD 232

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           V+++V+WN +I+     G +   +  F RM       D  TF+S+L AC     +E GR 
Sbjct: 233 VKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRM 292

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           LH  I   GF  +  + + L+ ++ +CG +E ARR F  +  ++L  WN M++ YA    
Sbjct: 293 LHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDK 352

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
           G  A+ ++  M LEG   D FTFSS+V+SC +LG+ + G+ IH       F+ DV++ T+
Sbjct: 353 GKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTA 412

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           LV+MYAK G++ DA + FDG++ K+VVSW+ M+    Q+G   EA++L   M       +
Sbjct: 413 LVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQN 472

Query: 364 EVTLASILSSC 374
           EVT +S+L +C
Sbjct: 473 EVTASSVLHAC 483



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 171/326 (52%), Gaps = 2/326 (0%)

Query: 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMR 255
           + F+++ ++ +YGKC   EDAR+VFD +  R+   W+++V CY  N +   A+ V+  M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 256 LEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNID 315
            + +  D +T SS++ +C  L   + GR +     +  F+ DV+VATSL+ ++AK G ++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 316 DACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374
           +A  VF  M A ++++S   M+  + ++G    A+     M      PD  T A+IL +C
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
            S     + + +H + +++     +S+ NALI  Y+KCGS+  +   F ++   D+V+W 
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494
           ++I AY  +G  K++  +F +M +    PD   F  +L AC+    + +G R  ++ I+ 
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDG-RMLHVRITA 299

Query: 495 YHILPDSEHYTCLTDLLGRVGLLVEA 520
                D      L  +  R G L  A
Sbjct: 300 RGFDRDFAMQNNLISMFTRCGSLESA 325



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 14/241 (5%)

Query: 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356
           D  +A  ++ MY K  + +DA +VFD +  +N  SW+ +V  + QN   +EA+++ ++M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
           +     D  TL+S+L++C  L    E R V   A + G +  + +  +LI+ ++KCG + 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 417 GALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475
            A   F S+    D+++ T++IGAY  HG +  +++ + KM S  + PD+  +  +L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 476 SHGGLVSEGLRYFNLMISDYHILPDSEHY------TCLTDLLGRVGLLVEAYDLLASMPI 529
           S    + +G           HIL +S+H+        L  +  + G L ++  L  +M +
Sbjct: 181 SSPDFLLDGKHIHK------HIL-ESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDV 233

Query: 530 E 530
           +
Sbjct: 234 K 234


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 319/593 (53%), Gaps = 13/593 (2%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   ++ G L  GK +H  I+  GL +++ L N ++ +Y KC   D    LFD     +
Sbjct: 166 ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 225

Query: 129 IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--IEVGRRL 184
            V+WN+LI+G +  G    +    ++M  + +  +  T  S L+AC    +     G  L
Sbjct: 226 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 285

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALNCL 243
           H   +K+G  L+  V +AL+D+Y K G ++DA ++FD+++ +++V++N M++       +
Sbjct: 286 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETI 345

Query: 244 GDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            D     A+ +F  M+  G+K   FT+SSL+ +C  +   K  +Q+H L+ K     D  
Sbjct: 346 EDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEY 405

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           + + L+D+Y+  G++ DA   F+ +    +V    M+ G+ QNG+   A+ L  ++L   
Sbjct: 406 IGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYE 465

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PDE   ++I+SSC ++ +     Q+  +A K G+  F   +N+ I  Y+K G +  A 
Sbjct: 466 EKPDEFIXSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAAN 525

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  ++ PD+V+W+++I + A HG + E++  FE M S  + P+  AFL VL ACSH G
Sbjct: 526 LTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRG 585

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EGLRYF+ M  DY +    +H  C+ DLLGR G L +A  L+  +  E       A 
Sbjct: 586 LVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRAL 645

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC++H     A+  A+K++ELEP    +Y L+ N+Y         +++R +M +    
Sbjct: 646 LSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIK 705

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYA----MLCTVFGLMEENNVSGH 648
           K PG SWI+I  ++++FVS DRSH  +  +YA    ML T   L    ++ G+
Sbjct: 706 KEPGLSWIQIGDKVYSFVSGDRSHKNSGQIYAKLDEMLATTKRLDSAKDILGY 758



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 227/428 (53%), Gaps = 9/428 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y + ++ + K G L  GK +HSH++K      L LQN +L++Y KC      +KLFD+M 
Sbjct: 62  YVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMS 121

Query: 126 VRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             NIVT+N+LISG +       V   F +     ++LD  T    L AC Q+ ++  G+ 
Sbjct: 122 KSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKM 181

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H  IL  G G    ++++L+D+Y KCG V+ AR +FD     D V WN +++ Y  N  
Sbjct: 182 IHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGK 241

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT--LGSSKLGRQIHGLVIKQSFDLDVLVA 301
            +  + +   M   G+  + +T  S + +C +   G    G  +H   IK    LDV+V 
Sbjct: 242 YEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVG 301

Query: 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD-----GREAVKLLRDML 356
           T+L+DMYAK G++DDA ++FD M  KNVV +N M+ G  Q          +A+ L  +M 
Sbjct: 302 TALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMK 361

Query: 357 QGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416
                P   T +S+L +C  +      +QVHA   KNG+ +   I + LI+ YS  GS+ 
Sbjct: 362 SCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMM 421

Query: 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476
            AL CF S+    +V  T++I  Y  +G  + ++ +F ++L++  +PD      ++S+C+
Sbjct: 422 DALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCA 481

Query: 477 HGGLVSEG 484
           + G++  G
Sbjct: 482 NMGMLRSG 489



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 208/409 (50%), Gaps = 25/409 (6%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
           L+ + +  L+++  +   +  G+ +HS ++K  F    F+ + L+++Y KCG    A ++
Sbjct: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKL 116

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           FD++   ++V +N ++S Y      D  + +F+  R  G+K D +T +  + +C   G+ 
Sbjct: 117 FDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNL 176

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
             G+ IHGL++       V++  SL+DMY+K G +D A  +FD     + VSWN+++ G+
Sbjct: 177 SAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGY 236

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET--RQVHAYAIKNGVQA 397
            QNG   E + +L+ M Q     +  TL S L +C S    C+     +H +AIK G+  
Sbjct: 237 VQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHL 296

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIE------ 451
            + +  AL++ Y+K GS+  A+Q F  + + ++V + +++       L +E+IE      
Sbjct: 297 DVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGL----LQQETIEDKCAYK 352

Query: 452 ---VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY---FNLMISDYHILPDSEHYT 505
              +F +M S  ++P    +  +L AC    ++ E  ++    + ++    +L D    +
Sbjct: 353 ALNLFFEMKSCGIKPSMFTYSSLLKAC----IIVEDFKFAKQVHALMCKNGLLSDEYIGS 408

Query: 506 CLTDLLGRVGLLVEA---YDLLASMPIEPRSDTLGAFIGACKVHGSIGL 551
            L DL   +G +++A   ++ + ++ I P +  +  ++   +   ++ L
Sbjct: 409 ILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSL 457


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 278/473 (58%), Gaps = 1/473 (0%)

Query: 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224
           + + + AC++   +  GR++H+ ++   +    F+ + LV +Y +CG ++DAR V D + 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            R +V W  M+S Y+       A+ +F  M   G   + +T ++++ SC    S   G+Q
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD 344
           +H L++K +F+  + V +SL+DMYAK+ NI +A RVFD +  ++VVS   ++ G+ Q G 
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
             EA+ L R +       + VT  +++++   L+     +QVHA  ++  +  F++++N+
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ YSKCG +  + + F ++ E  +V+W +++  Y  HGL  E I +F K L   V+PD
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF-KDLHKEVKPD 311

Query: 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
           S+  L VLS CSHGGLV EGL  F+ ++ +   L  + HY C+ DLLGR G L +A +L+
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 525 ASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584
            +MP E      G+ +GAC+VH ++ + +  A+KLLE+EP    NY ++SN+YA+   W 
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 585 DVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVF 637
           DV ++RK+M +    K PG SWI +   IHTF SS+R HP    + A +  +F
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIF 484



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 204/384 (53%), Gaps = 7/384 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y  A+    +   L +G+Q+H+ ++       + L  +++ +YV+C A DD   + D M 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 126 VRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R++V+W T+ISG      +V     F +ML      +  T  ++L +C     I  G++
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +HS ++K  F  + FV S+L+D+Y K   +++ARRVFD +  RD+V    ++S YA   L
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS 303
            + A+ +F  +  EGM+ ++ TF++LV +   L S   G+Q+H L++++     V +  S
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363
           L+DMY+K G +  + RVFD M  ++VVSWN M++G+G++G G E + L +D L     PD
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPD 311

Query: 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN--ALINAYSKCGSIAGALQC 421
            VTL ++LS C    +  E   +    +K    A L   +   +I+   + G +  AL  
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQ-SALLHTGHYGCIIDLLGRSGRLEKALNL 370

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHG 444
             ++  E     W S++GA   H 
Sbjct: 371 IENMPFESTPSIWGSLLGACRVHA 394



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 57  ESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDD 116
           E     H  ++  +   +    L  GKQ+H+ I++  L   ++LQN ++ +Y KC     
Sbjct: 206 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY 265

Query: 117 MEKLFDEMRVRNIVTWNTLISGIINCG-GNVTPYFRRMLLDNVRLDHITFNSLLRACVQA 175
             ++FD M  R++V+WN ++ G    G G+      + L   V+ D +T  ++L  C   
Sbjct: 266 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHG 325

Query: 176 DDIEVGRRLHSFILKVGFG-LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL-VLWNV 233
             ++ G  +   ++K     L+      ++DL G+ G +E A  + + +       +W  
Sbjct: 326 GLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 385

Query: 234 MV-SCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSLVNSCG 274
           ++ +C     +  G +    L+ +E    G+Y   S++  + G
Sbjct: 386 LLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAG 428


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/545 (33%), Positives = 297/545 (54%), Gaps = 12/545 (2%)

Query: 120 LFDEMRVRNIVTWNTLISGIINCGGN--VTPYFRRMLLDNVRLDHITFNSLLRACVQADD 177
           LFD +    I  WNT++           V   + R+    V  D  TF  LL+A  +  +
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 178 IEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSC 237
            E   + ++ I+K G   + FV ++LV  +  CG+V+ +RR+F E   +D+V W  +++ 
Sbjct: 120 -ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN- 177

Query: 238 YALNCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
               CL +G    A+  F  MR  G++ D  T  S++ +   L     GR +HG  ++  
Sbjct: 178 ---GCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESG 234

Query: 294 FDL-DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
             + DV V ++LVDMY+K G  DDA +VF+ M  +N+VSW  ++ G+ Q    +EA+K+ 
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVF 294

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
           ++M+     P++ T+ S L++C  L    + R +H Y  ++ +     +  AL++ YSKC
Sbjct: 295 QEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKC 354

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G +  AL  F  +   D+  WT++I   A  G +  S+ +F +M+   V+P+ + FL VL
Sbjct: 355 GCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVL 414

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           SAC+HGGLV EGL  F LMI DY + P+ +HY C+ DLLGR G L EA   + SMP+EP 
Sbjct: 415 SACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPT 474

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
               GA    C +H +  L +     L++L+P     Y L++N+Y+  + W   A +R++
Sbjct: 475 PGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRL 534

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVL 652
           M+     K P CSWIE+ G IH F++ D+SH +++++Y ML +V   ++    +   N+L
Sbjct: 535 MKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYALDSNLL 594

Query: 653 DKEMD 657
              +D
Sbjct: 595 TFTID 599



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 213/428 (49%), Gaps = 23/428 (5%)

Query: 44  VLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ 103
           V  S+LRN G I +     H+F    LK  +K    +   Q ++HI+K GL     +QN 
Sbjct: 90  VAYSRLRNHGVIPDR----HTF-PLLLKAFSKLRN-ENPFQFYAHIVKFGLDFDAFVQNS 143

Query: 104 VLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPY--FRRMLLDNVRLD 161
           ++  +  C   D   +LF E   +++V+W  LI+G +  G  V     F  M    V +D
Sbjct: 144 LVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVD 203

Query: 162 HITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVF 220
            +T  S+L A     D+  GR +H F ++ G  + + +V SALVD+Y KCG+ +DA +VF
Sbjct: 204 EVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVF 263

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
           +E+  R+LV W  +++ Y        A+ VF  M +EG++ +  T +S + +C  LGS  
Sbjct: 264 NEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLD 323

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFG 340
            GR +H  V +    L+  + T+LVDMY+K G +D+A  VF+ + AK+V  W  M+ G  
Sbjct: 324 QGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLA 383

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA-----YAIKNGV 395
             GD   ++ L   M++    P+ VT   +LS+C    +  E  ++       Y ++  V
Sbjct: 384 MRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNV 443

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFE 454
             +      +++   + G +  A++   S+  EP    W ++      H    ++ E+ E
Sbjct: 444 DHY----GCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIH----KAFELGE 495

Query: 455 KMLSHAVR 462
            + +H ++
Sbjct: 496 HIGNHLIK 503



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 169/360 (46%), Gaps = 33/360 (9%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVR 159
           + ++ +Y KC   DD  K+F+EM  RN+V+W  LI+G + C         F+ M+++ + 
Sbjct: 244 SALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIE 303

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV 219
            +  T  S L AC Q   ++ GR LH ++ +   GLN  + +ALVD+Y KCG V++A  V
Sbjct: 304 PNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLV 363

Query: 220 FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           F+++  +D+  W  M++  A+      ++ +F+ M    ++ +  TF  ++++C   G  
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423

Query: 280 KLGRQIHGLVI-KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMVV 337
             G ++  L+I     + +V     +VD+  + G +++A +  + M  +     W  +  
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483

Query: 338 G--------FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH-- 387
           G         G++  G   +K     LQ       + LA++ S C     +   R++   
Sbjct: 484 GCMIHKAFELGEH-IGNHLIK-----LQPHHSGRYILLANLYSRCQKWEAAANVRRLMKG 537

Query: 388 ---------AYAIKNGV-QAFLSIENA---LINAYSKCGSIAGALQCFGSVKEPDLVTWT 434
                    ++   NGV   F++ + +    IN Y   GS+   L+      + +L+T+T
Sbjct: 538 KGVDKSPACSWIEVNGVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYALDSNLLTFT 597


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 299/535 (55%), Gaps = 11/535 (2%)

Query: 78  FLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--VRNIVTWNTL 135
            L  G+++H+ ++K G   + S+ N +L +Y       D  ++F+E    V + +T+N +
Sbjct: 199 LLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVM 258

Query: 136 ISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGF 193
           I G+ + G +      F+ M    +R   +TF S++ +C  A    V  ++H+  +K+GF
Sbjct: 259 IGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSA---RVSHQVHAQAIKMGF 315

Query: 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253
                VS+A + +Y  CG +     VFD +  +DL+ WN+++  YA       AI  F  
Sbjct: 316 EACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQ 375

Query: 254 MRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313
           M+  G++ D FT  SL+ S  +L   ++ +    LV K   +  + V+ +LV  ++K+G 
Sbjct: 376 MQRAGIEPDEFTIGSLLASSESL---EIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQ 432

Query: 314 IDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373
           I+ A +VF+ M++ N++SWNT++ GF  NG   + ++   ++L  +  P+  TL+ +LS 
Sbjct: 433 IEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSI 492

Query: 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTW 433
           C S+S     +Q+H Y +++GV +  S+ NALI  Y+KCG +  +L+ F  +   D+V+W
Sbjct: 493 CASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSW 552

Query: 434 TSIIGAYAFHGLSKESIEVFEKML-SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492
            ++I AYA HG  KE++  F+ M  S  V+PD   F  VLSACSH GLV +G R FN M+
Sbjct: 553 NAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMV 612

Query: 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLA 552
           +DY   P ++H +C+ DLLGR G L EA  L+ S  ++  S        AC  HG++ L 
Sbjct: 613 NDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLG 672

Query: 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607
           +  A  LLE+E + P  Y L+SN+YA+   W + A  R +M+     K PGCSWI
Sbjct: 673 RIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217
           ++ DH T +S L AC        G +LH++ ++ G      V + L+  Y K   +   +
Sbjct: 49  LKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQ 108

Query: 218 RVFDEVLCRDL-------------------------------VLWNVMVSCYALNCLGDG 246
           RVF+E+   D+                               V+WN +++  A N   + 
Sbjct: 109 RVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEI 168

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+ +F  M   G++ D +TF+S+++ C +L     GR++H LVIK  F +   V  +L+ 
Sbjct: 169 ALNLFREMHQLGVRHDKYTFASVLSLC-SLELLDFGREVHTLVIKTGFLVRASVINALLT 227

Query: 307 MYAKNGNIDDACRVFDGM--TAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           MY  +G + DA  VF+    T  + +++N M+ G    G   EA+ + ++M +    P E
Sbjct: 228 MYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTE 287

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
           +T  S++SSC S  +S    QVHA AIK G +A   + NA +  YS CG++      F  
Sbjct: 288 LTFVSVMSSCSSARVS---HQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDR 344

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484
           ++E DL++W  II  YA     + +I  F +M    + PD      +L++     +V   
Sbjct: 345 LEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIV--- 401

Query: 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527
            + F  ++S   +    E    L     + G + +AY +  +M
Sbjct: 402 -KMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNM 443



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 32/183 (17%)

Query: 326 AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETR 384
           A+ ++  N ++    ++     +V+L   +   ++  PD  TL+S L++C +L  +    
Sbjct: 14  AEQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGN 73

Query: 385 QVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGA----- 439
           Q+HAY+I+ G++A+  + N L++ Y+K   +    + F  ++ PD+ +WT+++ A     
Sbjct: 74  QLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLG 133

Query: 440 ---YAFHGLSKE-----------------------SIEVFEKMLSHAVRPDSIAFLEVLS 473
              YA H  ++                        ++ +F +M    VR D   F  VLS
Sbjct: 134 QIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLS 193

Query: 474 ACS 476
            CS
Sbjct: 194 LCS 196


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 198/583 (33%), Positives = 308/583 (52%), Gaps = 12/583 (2%)

Query: 56  HESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFD 115
           H+   ++ SFY+  +  S     L Q   +H+ ++  GL +   L  ++++         
Sbjct: 49  HDHCFNSDSFYASLIDNSTHKRHLDQ---IHNRLVISGLQHNGFLMTKLVNGSSNLGQIC 105

Query: 116 DMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
              KLFDE    ++  WN +I      N   +    +R M    V  D  TF  +L+AC 
Sbjct: 106 YARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACT 165

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           +  D  +   +H  I+K GFG + FV + LV LY KCG +  A+ VFD +  R +V W  
Sbjct: 166 ELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTS 225

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           ++S YA N     A+ +F+ MR  G+K D+    S++ +   +   + GR IHG VIK  
Sbjct: 226 IISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMG 285

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLR 353
            + +  +  SL   YAK G +  A   FD M   NV+ WN M+ G+ +NG   EAV L  
Sbjct: 286 LEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFH 345

Query: 354 DMLQGSFCPDEVTLAS-ILSSC--GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410
            M+  +  PD VT+ S +L+S   GSL ++   + +  Y  K+   + + +  +LI+ Y+
Sbjct: 346 YMISRNIKPDSVTVRSAVLASAQVGSLELA---QWMDDYVSKSNYGSDIFVNTSLIDMYA 402

Query: 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE 470
           KCGS+  A + F    + D+V W+++I  Y  HG   E+I ++  M    V P+ + F+ 
Sbjct: 403 KCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIG 462

Query: 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE 530
           +L+AC+H GLV EG   F+ M  D+ I+P +EHY+C+ DLLGR G L EA   +  +PIE
Sbjct: 463 LLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIE 521

Query: 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590
           P     GA + ACK++  + L ++AA KL  L+P    +Y  +SN+YAS   W  VA +R
Sbjct: 522 PGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVR 581

Query: 591 KMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
            +MR+   +K  G S IEI G++  F   D+SHP A  ++  L
Sbjct: 582 VLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDEL 624


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/479 (36%), Positives = 265/479 (55%), Gaps = 34/479 (7%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           DH T+   L++C  + D+ +G ++HS + K+    N +V+ + + +Y +CG  EDA RVF
Sbjct: 122 DHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVF 181

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVF-NLMRLEGMKGDYFTFSSLVNSCGTLGSS 279
           D +  RD+V WN M++ +A   L D AI VF   + L+G   D  T + ++ + G     
Sbjct: 182 DGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGN---- 237

Query: 280 KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGF 339
                                        AK  +I    RVFD M  K ++SWN M+  +
Sbjct: 238 -----------------------------AKPDDIRFVRRVFDNMQFKELISWNAMLAVY 268

Query: 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399
             N    +AV+L   M +    PD +TLA++L  CG LS     +++H    +  +   L
Sbjct: 269 ANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNL 328

Query: 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459
            +ENAL++ Y+ CG +  A + F  +   D+++WTSII AY  HG  +E++++FEKML  
Sbjct: 329 LLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQ 388

Query: 460 AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519
            + PDSIAF+ VL+ACSH GL+++G  YF+ M S YHI+P +EHYTC+ DLLGR G + E
Sbjct: 389 GLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINE 448

Query: 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579
           AYD + +M IEP     GA + AC++H ++ +   AA+ L  L P +   Y L+SN+YA 
Sbjct: 449 AYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYAR 508

Query: 580 ERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFG 638
              W DV  +R +M +    K PG S +E+  ++HTF   DR HPQ+  +Y  L  + G
Sbjct: 509 AGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLG 567



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 140/349 (40%), Gaps = 75/349 (21%)

Query: 41  DRSVLSSQLRNSGTIHESTHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL 100
           D  VL + +R  G    +    H  Y  ALK  +    L  G Q+HS + KL L   + +
Sbjct: 104 DALVLFASMRPRGP---ACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYV 160

Query: 101 QNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG----------------- 143
            +  + +Y +C   +D  ++FD M  R++V+WN +I+G    G                 
Sbjct: 161 AHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQG 220

Query: 144 ---------------GNVTP---YFRRMLLDNVRL------------------------- 160
                          GN  P    F R + DN++                          
Sbjct: 221 SMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVEL 280

Query: 161 -----------DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK 209
                      D IT  ++L  C +     VG+R+H  I +     N  + +AL+D+Y  
Sbjct: 281 FMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYAS 340

Query: 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269
           CG ++DAR +FD +  RD++ W  ++S Y  +  G  A+ +F  M  +G++ D   F ++
Sbjct: 341 CGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAV 400

Query: 270 VNSCGTLGSSKLGRQ-IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317
           + +C   G    G+     +  +          T +VD+  + G I++A
Sbjct: 401 LAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEA 449


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 312/574 (54%), Gaps = 9/574 (1%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           AL   ++ G L  GK +H  I+  GL +++ L N ++ +Y KC   D    LFD     +
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 129 IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADD--IEVGRRL 184
            V+WN+LI+G +  G    +    ++M  + +  +  T  S L+AC    +     G  L
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 192

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS-CYALNCL 243
           H   +K+G  L+  V +AL+D+Y K G ++DA ++FD+++ +++V++N M++       +
Sbjct: 193 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETI 252

Query: 244 GDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
            D     A+ +F  M+  G+K   FT+SSL+ +C  +   K  +Q+H L+ K     D  
Sbjct: 253 EDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEY 312

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS 359
           + + L+D+Y+  G++ DA   F+ +    +V    M+ G+ QNG+   A+ L  ++L   
Sbjct: 313 IGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYE 372

Query: 360 FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL 419
             PDE   ++I+SSC ++ +     Q+  +A K G+  F   +N+ I  Y+K G +  A 
Sbjct: 373 EKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAAN 432

Query: 420 QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479
             F  ++ PD+V+W+++I + A HG + E++  FE M S  + P+  AFL VL ACSH G
Sbjct: 433 LTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRG 492

Query: 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF 539
           LV EGLRYF+ M  DY +    +H  C+ DLLGR G L +A  L+  +  E       A 
Sbjct: 493 LVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRAL 552

Query: 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599
           + AC++H     A+  A+K++ELEP    +Y L+ N+Y         +++R +M +    
Sbjct: 553 LSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIK 612

Query: 600 KVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           K PG SWI+I  ++++FVS DRSH  +  +YA L
Sbjct: 613 KEPGLSWIQIGDKVYSFVSGDRSHKNSGQIYAKL 646



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 201/384 (52%), Gaps = 9/384 (2%)

Query: 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNS 167
           KC      +KLFD+M   NIVT+N+LISG +       V   F +     ++LD      
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
            L AC Q+ ++  G+ +H  IL  G G    ++++L+D+Y KCG V+ AR +FD     D
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT--LGSSKLGRQI 285
            V WN +++ Y  N   +  + +   M   G+  + +T  S + +C +   G    G  +
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 192

Query: 286 HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD- 344
           H   IK    LDV+V T+L+DMYAK G++DDA ++FD M  KNVV +N M+ G  Q    
Sbjct: 193 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETI 252

Query: 345 ----GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
                 +A+ L  +M      P   T +S+L +C  +      +QVHA   KNG+ +   
Sbjct: 253 EDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEY 312

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           I + LI+ YS  GS+  AL CF S+    +V  T++I  Y  +G  + ++ +F ++L++ 
Sbjct: 313 IGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYE 372

Query: 461 VRPDSIAFLEVLSACSHGGLVSEG 484
            +PD   F  ++S+C++ G++  G
Sbjct: 373 EKPDEFIFSTIMSSCANMGMLRSG 396



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 163/333 (48%), Gaps = 32/333 (9%)

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           KCG    A ++FD++   ++V +N ++S Y      D  + +F+  R  G+K D +  + 
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN 328
            + +C   G+   G+ IHGL++       V++  SL+DMY+K G +D A  +FD     +
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET--RQV 386
            VSWN+++ G+ QNG   E + +L+ M Q     +  TL S L +C S    C+     +
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 192

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
           H +AIK G+   + +  AL++ Y+K GS+  A+Q F  + + ++V + +++       L 
Sbjct: 193 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGL----LQ 248

Query: 447 KESIE---------VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497
           +E+IE         +F +M S  ++P    +  +L AC              +++ D+  
Sbjct: 249 QETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKAC--------------IIVEDFKF 294

Query: 498 LPDSEHYTCLTDLLG--RVG-LLVEAYDLLASM 527
                   C   LL    +G +L++ Y +L SM
Sbjct: 295 AKQVHALMCKNGLLSDEYIGSILIDLYSVLGSM 327



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 107/255 (41%), Gaps = 3/255 (1%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           YS  LK        +  KQ+H+ + K GL +   + + ++ +Y    +  D    F+ + 
Sbjct: 279 YSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIH 338

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
              IV    +I G +  G   +    F  +L    + D   F++++ +C     +  G +
Sbjct: 339 NLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQ 398

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +     KVG        ++ + +Y K G +  A   F ++   D+V W+ M+   A +  
Sbjct: 399 IQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGH 458

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG-RQIHGLVIKQSFDLDVLVAT 302
              A+  F LM+  G++ ++F F  ++ +C   G  + G R    +       L V    
Sbjct: 459 AMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCV 518

Query: 303 SLVDMYAKNGNIDDA 317
            +VD+  + G + DA
Sbjct: 519 CVVDLLGRAGRLADA 533



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 4/175 (2%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +   A  G L+ G+Q+  H  K+G+      QN  + +Y K          F +M 
Sbjct: 380 FSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQME 439

Query: 126 VRNIVTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             +IV+W+T+I      G  +    +F  M    +  +H  F  +L AC     +E G R
Sbjct: 440 NPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLR 499

Query: 184 LHSFILK-VGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMVS 236
               + K     L+      +VDL G+ G + DA  +   +    + V+W  ++S
Sbjct: 500 YFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLS 554


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/525 (33%), Positives = 289/525 (55%), Gaps = 9/525 (1%)

Query: 77  GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136
           G L  GK++H H++K G    + + N ++ +Y KC + +D +K+FD MR R+ ++W+ +I
Sbjct: 81  GELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMI 140

Query: 137 SGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRAC--VQADDIEVGRRLHSFILKVG 192
           +G +  G        ++ M +D    D  TF+++L AC  +    +EVG+ +H+ + ++ 
Sbjct: 141 AGYVRHGLAREAIKLYKAMAIDP---DGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIW 197

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
              + FV SALV ++ KCG ++++R VFD+   +D++ WN M+  Y+ +     AI +F 
Sbjct: 198 LKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFK 257

Query: 253 LMRLEG--MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
            M      ++ +  T+++++ +C  +   + G+++H  ++   F  D     SLV+MYAK
Sbjct: 258 SMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAK 317

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G+I +A  VFDGM  + VVSW  ++  + + G  REA+ L R M      P+ +T AS+
Sbjct: 318 CGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASV 377

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           LS+C SL    E + VHA     G +  L++ NAL++ Y KCGS+  A + F  +K  ++
Sbjct: 378 LSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNV 437

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
           V+WT++I AYA H  S+E+I++++ M    V+  S  +  VL+ACS  GL+     YF  
Sbjct: 438 VSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGC 497

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550
           +  D       E Y C+  +LGR G L EA +LLA MP E         + ACK H  + 
Sbjct: 498 LTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLAACKAHNDVE 557

Query: 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595
                AE L  LEP     Y L+SN+Y +     + AR+R+ M D
Sbjct: 558 RGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKMGD 602



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+  L   +    L+QGK++H  ++  G     + +N ++++Y KC +  +  ++FD M+
Sbjct: 273 YTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMK 332

Query: 126 VRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R +V+W  +IS  +  G        +R+M  + V  + ITF S+L AC     +E G+ 
Sbjct: 333 QRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKA 392

Query: 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243
           +H+ +   G+  +  V++ALV LYGKCG V+ AR+VFD +  R++V W  M+S YA +  
Sbjct: 393 VHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRH 452

Query: 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK 291
            + AI ++  M LEG++   F + +++ +C   G  +  R   G + +
Sbjct: 453 SEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTR 500



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 16/236 (6%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L   +  G L++GK +H+ +   G    L++ N ++ +Y KC + D   K+FD M+
Sbjct: 374 FASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMK 433

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
           +RN+V+W  +IS   +          ++ M L+ V+     + ++L AC QA  +E  R 
Sbjct: 434 IRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARH 493

Query: 184 LHSFILKVGFGLNCFVSSALVD------LYGKCGFVEDARRVFDEV-LCRDLVLW-NVMV 235
               + +     +C   + L D      + G+ G + +A  +   +    + V W  ++ 
Sbjct: 494 YFGCLTR-----DCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLA 548

Query: 236 SCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           +C A N +  GA     L RLE + +  Y   S++  + G    +   R+  G VI
Sbjct: 549 ACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKMGDVI 604


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/496 (35%), Positives = 295/496 (59%), Gaps = 1/496 (0%)

Query: 148 PYFRRMLLDNVRLDHIT-FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDL 206
           P  + ++   +R  H++    LL++  +      G   H+ I++VG   +   S+ L+++
Sbjct: 32  PSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNM 91

Query: 207 YGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266
           Y KCG VE AR++FDE+  R LV WN MV  +  N   + A+ +F  M+ EG+    FT 
Sbjct: 92  YSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTV 151

Query: 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326
           SS+V +C         +Q+HG  +K + D +V V T+L+D+YAK G + DA  VF+ M  
Sbjct: 152 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPE 211

Query: 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386
           ++ V+W++MV G+ QN    EA+ L           ++ T++S LS+C + +   E +QV
Sbjct: 212 RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQV 271

Query: 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLS 446
            A   K G+ + + + ++LI+ Y+KCG I  A   F SV+E ++V W +++  ++ H  S
Sbjct: 272 QAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRS 331

Query: 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506
            E++  FEKM    + P+ I ++ VL+ACSH GLV +G +YF+LMI  +++ P+  HY+C
Sbjct: 332 LEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSC 391

Query: 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566
           + D+LGR GLL EA DL+  MP +  +   G+ + +C+++ ++  A+ AA+ L E+EP  
Sbjct: 392 MVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHN 451

Query: 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
             N+ L+SN+YA+   W +VAR R +++++   K  G SWIEI  ++H+F+  +R+HP+ 
Sbjct: 452 AGNHVLLSNIYAANNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRI 511

Query: 627 VHMYAMLCTVFGLMEE 642
           V +Y  L  + G M++
Sbjct: 512 VEIYLKLEDLVGEMKK 527



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 175/318 (55%), Gaps = 2/318 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L+ SA+     +G   H+ I+++GL       N ++++Y KC   +   KLFDEM VR++
Sbjct: 54  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 113

Query: 130 VTWNTLISGIINCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WNT++      G +      F +M  + +     T +S++ AC     +   ++LH F
Sbjct: 114 VSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGF 173

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
            LK     N FV +AL+D+Y KCG V+DA  VF+ +  R  V W+ MV+ Y  N L + A
Sbjct: 174 ALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEA 233

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F+  +  G++ + FT SS +++C    +   G+Q+  ++ K     ++ V +SL+DM
Sbjct: 234 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDM 293

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G I++A  VF  +  KNVV WN M+ GF ++    EA+     M Q   CP+E+T 
Sbjct: 294 YAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITY 353

Query: 368 ASILSSCGSLSISCETRQ 385
            S+L++C  L +  + R+
Sbjct: 354 ISVLTACSHLGLVEKGRK 371



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 81  QGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII 140
           +GKQ+ + + K G+ + + + + ++ +Y KC   ++   +F  +  +N+V WN ++SG  
Sbjct: 267 EGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFS 326

Query: 141 NCGGNVTP--YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKV-GFGLNC 197
               ++    YF +M    +  + IT+ S+L AC     +E GR+    +++V     N 
Sbjct: 327 RHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNV 386

Query: 198 FVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLW-NVMVSCYALNCLGDGAIAVFNLMR 255
              S +VD+ G+ G + +A+ + D +       +W +++ SC     L    +A  +L  
Sbjct: 387 LHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFE 446

Query: 256 LE 257
           +E
Sbjct: 447 IE 448


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/568 (33%), Positives = 311/568 (54%), Gaps = 12/568 (2%)

Query: 83  KQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI--VTWNTLISGII 140
           +Q+H+ ++  GL     + ++V+  +     + D    + E     +    +N+LI+G +
Sbjct: 22  RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYV 81

Query: 141 NCGGN----VTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN 196
             GG         +RRM+ D    D  TF  LL+AC        GR++H  ++K+G   +
Sbjct: 82  --GGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLAD 139

Query: 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256
            +V ++L+  YG CG    A +VFDE+L RD+V WN ++S +      D AI+VF  M +
Sbjct: 140 HYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDV 199

Query: 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316
           E       T  S++ +C   G    G+ IHG VI++ F +++++  +++DMY KNG   +
Sbjct: 200 EP---SMTTLVSVLAACARNGDLCTGKGIHG-VIERRFKVNLVLGNAMLDMYVKNGCFYE 255

Query: 317 ACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376
           A  +FD +  +++VSW  M+ G  Q+   +++++L   M      PD + L S+LS+C S
Sbjct: 256 AKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACAS 315

Query: 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436
           L        VH Y  + G++  + I  A+++ Y+KCG I  AL+ F S+ + +  TW ++
Sbjct: 316 LGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNAL 375

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           +   A HGL  E++ +FE M+   V+P+ I FL +L+AC H GLV EG +YF+ M   Y+
Sbjct: 376 LCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYN 435

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           +LP  EHY C+ DL  R GLL EA +L  +MP++P     G  + AC   G+I L+    
Sbjct: 436 LLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQ 495

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
           + +LEL+      + L+SN+ A  + W +V RLR++M+D    K PG S IE+ G+ H F
Sbjct: 496 DYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEF 555

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENN 644
           V  D SH Q   +Y +L  +  +  E++
Sbjct: 556 VVGDISHLQTEEIYKVLNLINSVYHESH 583



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 202/374 (54%), Gaps = 8/374 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  + F   ++G+Q+H  ++KLGL     +QN ++  Y  C  F    K+FDEM VR++
Sbjct: 112 LKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDV 171

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+WN+LISG +  G        F RM   +V     T  S+L AC +  D+  G+ +H  
Sbjct: 172 VSWNSLISGFMKAGHFDEAISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHG- 227

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
           +++  F +N  + +A++D+Y K G   +A+ +FDE+  RD+V W +M++    +     +
Sbjct: 228 VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQS 287

Query: 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDM 307
           + +F++MR  G+  D    +S++++C +LG+   G  +H  + ++    D+ + T++VDM
Sbjct: 288 LELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDM 347

Query: 308 YAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367
           YAK G I+ A ++F  M+ +N  +WN ++ G   +G   EA+ L   M+     P+E+T 
Sbjct: 348 YAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITF 407

Query: 368 ASILSSCGSLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK 426
            +IL++C    +  E R+      K   +   L     +I+ + + G +  A++   ++ 
Sbjct: 408 LAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMP 467

Query: 427 -EPDLVTWTSIIGA 439
            +PD++ W  ++ A
Sbjct: 468 MKPDVLIWGLLLNA 481



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 184/391 (47%), Gaps = 22/391 (5%)

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD 227
           LL +     ++ + R++H+ ++  G   + FV+S +++ +    FVE     + +  C  
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFAN--FVE-----YGDYACDY 60

Query: 228 LVLWNVMVSCYALNCLGDG---------AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS 278
           L   N  +  +  N L +G         A++V+  M  +G   D FTF  L+ +C     
Sbjct: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120

Query: 279 SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVG 338
           S+ GRQ+HG+V+K     D  V  SL+  Y   G+   A +VFD M  ++VVSWN+++ G
Sbjct: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398
           F + G   EA+ +   M      P   TL S+L++C      C  + +H   I+   +  
Sbjct: 181 FMKAGHFDEAISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHG-VIERRFKVN 236

Query: 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458
           L + NA+++ Y K G    A   F  +   D+V+WT +I         K+S+E+F  M +
Sbjct: 237 LVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRT 296

Query: 459 HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518
             + PD+I    VLSAC+  G +  G  + +  I+   I  D    T + D+  + G + 
Sbjct: 297 LGISPDAIILTSVLSACASLGTLDFG-TWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIE 355

Query: 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSI 549
            A  +  SM  +  + T  A +    +HG +
Sbjct: 356 MALKIFYSMS-QRNTFTWNALLCGLAMHGLV 385



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 46/270 (17%)

Query: 67  SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV 126
           +  L   A  G L  G  +H +I + G+   + +   ++ +Y KC   +   K+F  M  
Sbjct: 307 TSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQ 366

Query: 127 RNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRL 184
           RN  TWN L+ G+   G        F  M++  V+ + ITF ++L AC            
Sbjct: 367 RNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCH---------- 416

Query: 185 HSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-----LCRDLVLWNVMVSCYA 239
                                    CG V++ R+ FD +     L   L  +  M+  + 
Sbjct: 417 -------------------------CGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFC 451

Query: 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL 299
              L + A+    L R   MK D   +  L+N+C T+G+ +L  +I   +++   D D  
Sbjct: 452 RAGLLEEAV---ELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHD-DSG 507

Query: 300 VATSLVDMYAKNGNIDDACRVFDGMTAKNV 329
           V   L ++ A N    +  R+   M  + V
Sbjct: 508 VFVLLSNISAINQRWSNVTRLRRLMKDRGV 537


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/530 (33%), Positives = 286/530 (53%), Gaps = 3/530 (0%)

Query: 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLD- 156
           +   +L++Y K     D + +FDEM  RN V+W  +++G     C       FR+ML + 
Sbjct: 155 VSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGEC 214

Query: 157 NVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216
            +  +     ++L A      + +G ++H  ++K G      V ++LV +Y K G ++ A
Sbjct: 215 PLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAA 274

Query: 217 RRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276
             VF+    R+ + W+ M++ Y+ N   + A+ +F+ M   G     FT   ++N+C  +
Sbjct: 275 FHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDV 334

Query: 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV 336
           G+   G+Q HGL++K  F++ V V ++LVDMYAK G I DA   F+  +  ++V W  MV
Sbjct: 335 GTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMV 394

Query: 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396
            G  QNG+  +A+ L   M +    P+ +T+ S+L +C  L+     +Q+H   +K G  
Sbjct: 395 TGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFG 454

Query: 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
              S+ +AL   YSKCG++   +  F  +   D++ W SII  ++ +G   ++I +FE+M
Sbjct: 455 LGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEM 514

Query: 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516
                 PD + F+ VL ACSH GLV  G  YF  MI DY + P  +HY C+ D+L R G+
Sbjct: 515 KLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGM 574

Query: 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576
           L EA D + S+ I+  +      +GAC+      +  +A EKL++L       Y L+SN+
Sbjct: 575 LSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNI 634

Query: 577 YASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQA 626
           YA++R W DV R+R +M+     K PGCSW+E+   +H FV  ++ HP A
Sbjct: 635 YAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRVHVFVVGEQQHPDA 684


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/539 (34%), Positives = 285/539 (52%), Gaps = 10/539 (1%)

Query: 102 NQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRL- 160
           N ++ +Y +C    +  ++FDEMR+R+ V+WN+LI    +   +    FRRML  +    
Sbjct: 59  NALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIGS--SGAEDALSQFRRMLRSSSSPG 116

Query: 161 -----DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215
                DH TF ++L AC +   +     +H  ++  GF     V +ALV  Y +C     
Sbjct: 117 GGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGS 176

Query: 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275
           A R F  +  R+++ W  M+S  A   L   +I +F  MR   +  +  T+SS + +C  
Sbjct: 177 AERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMR-RTVDANSATYSSSLLACAG 235

Query: 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTM 335
             + K G+QIHGLV+K   + D+ V + L+D+Y+K G ++D   VF      + +S   +
Sbjct: 236 SLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVI 295

Query: 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395
           +VGF QNG   +A +L  +M       D   ++++L + G+ +     +Q+HA  IK   
Sbjct: 296 LVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCF 355

Query: 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455
              + + N LIN YSKCG +  ++Q F      + ++W SII A+A HG   E  ++FE 
Sbjct: 356 GRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFES 415

Query: 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG 515
           M +    P  + FL +L  CSH G   +GL   N M S+Y ILP  EHY C+ D+LGR G
Sbjct: 416 MKADGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAG 475

Query: 516 LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575
           LL +A   +   P +  +    A +GAC   G+  + K+AAEKLL L+P  P  Y L+SN
Sbjct: 476 LLEDARSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSN 535

Query: 576 VYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF-VSSDRSHPQAVHMYAML 633
           +Y+SE  W D AR+ K MR+    K  G SWIE+  E+H+F V S  S P +  M  M+
Sbjct: 536 IYSSEGRWDDRARVMKSMREMGLRKDTGKSWIELEKEVHSFVVGSPASRPDSATMDDMM 594



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 214/418 (51%), Gaps = 13/418 (3%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H+ ++  L   A+   L     +H  ++  G   ++S+ N ++  Y +C++    E+ F 
Sbjct: 123 HATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFH 182

Query: 123 EMRVRNIVTWNTLISGII--NCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
            M  RN++TW  +ISG+       +    F++M    V  +  T++S L AC  +  ++ 
Sbjct: 183 GMAERNVITWTAMISGMAREELYKDSIVLFQQM-RRTVDANSATYSSSLLACAGSLALKE 241

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVSCY 238
           G+++H  ++K G   +  V S L+DLY KCG +ED   VF   LCR  D +   V++  +
Sbjct: 242 GQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFR--LCRQPDEISLTVILVGF 299

Query: 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298
           A N L + A  +F  M  EG+  D    S+++ + G      LG+QIH LVIK+ F  ++
Sbjct: 300 AQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNI 359

Query: 299 LVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358
            V   L++MY+K G ++++ +VF+   +KN +SWN+++  F ++G G E  KL   M   
Sbjct: 360 YVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKAD 419

Query: 359 SFCPDEVTLASILSSCGSLSISCETRQV-HAYAIKNGVQAFLSIENALINAYSKCGSIAG 417
              P +VT  S+L  C  +  + +  ++ ++ + + G+   +     +++   + G +  
Sbjct: 420 GANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLED 479

Query: 418 ALQCF--GSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473
           A      G  K+  L+ W +++GA +F G S+      EK+L   + PDS A   +LS
Sbjct: 480 ARSFIEDGPFKDSALL-WQALMGACSFRGNSEIGKYAAEKLLH--LDPDSPAAYVLLS 534



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 193/407 (47%), Gaps = 28/407 (6%)

Query: 160 LDHITFNSLLRACVQADDIEVGRRLHSFILK-VGFGLNCFVS----------SALVDLYG 208
           LD+   + LL  C +A D  +G  LH  I+K     L C +           +ALV +Y 
Sbjct: 7   LDYAYLSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYA 66

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM------RLEGMKGD 262
           +CG   +A RVFDE+  RD V WN ++         + A++ F  M         G+  D
Sbjct: 67  RCGRHAEAARVFDEMRIRDSVSWNSLIGSSG----AEDALSQFRRMLRSSSSPGGGVSCD 122

Query: 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322
           + TF++++++C    S      +HGLV+ + F+ +V V  +LV  Y +  +   A R F 
Sbjct: 123 HATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFH 182

Query: 323 GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCE 382
           GM  +NV++W  M+ G  +    ++++ L + M +          +S+L+  GSL++  E
Sbjct: 183 GMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDANSATYSSSLLACAGSLALK-E 241

Query: 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442
            +Q+H   +K G++  L +E+ L++ YSKCG +   L  F   ++PD ++ T I+  +A 
Sbjct: 242 GQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQ 301

Query: 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE 502
           +GL +++ E+F +M    +  D+     VL A       + G +   L+I          
Sbjct: 302 NGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCF---GRN 358

Query: 503 HYTC--LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
            Y C  L ++  + G L E+  +    P    S +  + I A   HG
Sbjct: 359 IYVCNGLINMYSKCGELEESIQVFNETP-SKNSISWNSIIAAFARHG 404


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 305/568 (53%), Gaps = 4/568 (0%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L+   + G L++G+ LH+ ++  G     + L N ++ +Y  C       +LF  M  RN
Sbjct: 177 LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 236

Query: 129 IVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGR-RLHSF 187
            V+W TL+SG+     +         +    +    F     A   A      R R  + 
Sbjct: 237 AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTA 296

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247
              VGF    FV+S L D+Y KCG + +A RVFD++  +D V W  M+  YA N   + A
Sbjct: 297 SASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAA 356

Query: 248 IAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           +  F  M+ EG+ G D   F S++++ G L    L + IH  V K  F+L+V V  +L+D
Sbjct: 357 VLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALID 416

Query: 307 MYAKNGNIDDACRVFD-GMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           MYAK+ +++ A RV        NVVS  +M+ G+ +     EA+ +  ++ +    P+E 
Sbjct: 417 MYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEF 476

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T +S++  C   ++  +  Q+HA  IK  +     + + L++ Y KCG I+ ++Q F  +
Sbjct: 477 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 536

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
           +    + W ++I  +A HG  +E+I+ F++M+   +RP+ IAF+ +L+ACSH GLV EGL
Sbjct: 537 EYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGL 596

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
           +YF  M   + I P  EHY+C+ D  GR G L EAY  ++ MPI+P +    + +GAC++
Sbjct: 597 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 656

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
            GS  L + AA+ L++LEP     +  +S +YAS   W DV  +RK+MRD+   K+PG S
Sbjct: 657 RGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFS 716

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           W++   + H F S D SHPQ   +Y  L
Sbjct: 717 WVDSNKKTHVFGSEDWSHPQQKDIYEKL 744



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 191/391 (48%), Gaps = 12/391 (3%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHS-FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           +   SLL++C +A D+  GR LH+  +L      + F+++ L+ +Y  C  +  A R+F 
Sbjct: 171 VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 230

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281
            +  R+ V W  +VS  + N +   A+A F  MR  G+    F  SS   +   LG+   
Sbjct: 231 AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLR 290

Query: 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341
            R          FD ++ VA++L DMY+K G + +ACRVFD M  K+ V+W  M+ G+ +
Sbjct: 291 ARSCTASA-SVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 349

Query: 342 NGDGREAVKLLRDM-LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           NG    AV   RDM  +G    D+    S+LS+ G L     ++ +H    K G +  ++
Sbjct: 350 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 409

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEP---DLVTWTSIIGAYAFHGLSKESIEVFEKML 457
           + NALI+ Y+K   +  A +      +P   ++V+ TS+I  Y      +E++ ++ ++ 
Sbjct: 410 VRNALIDMYAKSMDVESASRVLKI--DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELR 467

Query: 458 SHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517
              V P+   F  ++  C+   L+ +G +    +I    ++ DS   + L D+ G+ GL+
Sbjct: 468 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT-DLIRDSFVGSTLVDMYGKCGLI 526

Query: 518 VEAYDLLASMPIEPRSD-TLGAFIGACKVHG 547
             +  L     IE R+D    A I     HG
Sbjct: 527 SLSMQLFNE--IEYRTDIAWNAVINVFAQHG 555



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 154/369 (41%), Gaps = 54/369 (14%)

Query: 163 ITFNSLLRACVQADDIEVGRRLHS-FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221
           +   SLL++C +A D+  GR LH+  +L      + F+++ L+ +Y  C  +  A R+F 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 222 EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF--------------- 266
            +  R+ V W  +VS  + N +   A+A F  MR  G+      +               
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLA 140

Query: 267 ---------------------------------SSLVNSCGTLGSSKLGRQIHG-LVIKQ 292
                                            +SL+ SCG  G  + GR +H  LV+  
Sbjct: 141 ASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSG 200

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           +      +A  L+ MY+   ++  A R+F  M  +N VSW T+V G  QN    +A+   
Sbjct: 201 AAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAF 260

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M +    P    L+S   +  +L      R   A A   G    L + + L + YSKC
Sbjct: 261 AAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASA-SVGFDTELFVASNLADMYSKC 319

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEV 471
           G ++ A + F  + + D V WT++I  YA +G  + ++  F  M     V  D   F  V
Sbjct: 320 GLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSV 379

Query: 472 LSACSHGGL 480
           LSA   GGL
Sbjct: 380 LSAS--GGL 386



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           +S  +K  A    L+QG QLH+ ++K  L     + + ++ +Y KC       +LF+E+ 
Sbjct: 478 FSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIE 537

Query: 126 VRNIVTWNTLISGIIN--CGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
            R  + WN +I+       G      F RM+   +R +HI F SLL AC  A  ++ G +
Sbjct: 538 YRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLK 597

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCR-DLVLW-NVMVSCYA 239
            + + +K   G+       S ++D YG+ G +++A +   E+  + +   W +++ +C  
Sbjct: 598 -YFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 656

Query: 240 LNCLGDGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQI 285
                 G +A  NLM+LE G  G + + S +  S G     K  R++
Sbjct: 657 RGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKL 703



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLS-LQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           L+   + G L++G+ LH+ ++  G     + L N ++ +Y  C       +LF  M  RN
Sbjct: 27  LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 86

Query: 129 IVTWNTLISGI 139
            V+W TL+SG+
Sbjct: 87  AVSWTTLVSGL 97


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 307/544 (56%), Gaps = 25/544 (4%)

Query: 95  CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYF---- 150
           CN  S  N ++  Y K    +   +LFDEM   + V++NTLI+      G+  P F    
Sbjct: 72  CNVFSF-NTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYAR-RGDTQPAFQLFL 129

Query: 151 --RRMLLDNVRLDHITFNSLLRACVQADDIEVG--RRLHSFILKVGFGLNCFVS--SALV 204
             R   LD   +D  T + ++ AC     I VG  R+LH+  L V  GL+ +VS  +AL+
Sbjct: 130 EMREAFLD---MDGFTLSGIITAC----GINVGLIRQLHA--LSVVTGLDSYVSVGNALI 180

Query: 205 DLYGKCGFVEDARRVFDEVLC-RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263
             Y K GF+++ARR+F  +   RD V WN MV  Y  +  G  A+ ++  M + G+  D 
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDI 240

Query: 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR-VFD 322
           FT +S++ +   +     G Q H  +IK  +  +  V + L+D+Y+K G     CR VFD
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 323 GMTAKNVVSWNTMVVGFGQNGD-GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
            ++  ++V WNTM+ G+    D   EA++  R +      PD+ +L  ++S+C ++S   
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPS 360

Query: 382 ETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440
           + RQVH  A+K  + +  +S+ NALI  YSKCG++  A   F ++ E + V++ S+I  Y
Sbjct: 361 QGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGY 420

Query: 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500
           A HG+  +S+ +F++ML     P +I F+ VL+AC+H G V +G  YFN+M   + I P+
Sbjct: 421 AQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE 480

Query: 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560
           + H++C+ DLLGR G L EA  L+ ++P +P      A +GAC++HG++ LA  AA +LL
Sbjct: 481 AGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLL 540

Query: 561 ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSD 620
           +L+P     Y +++N+Y+      D A +RK+MRD    K PGCSWIE+   IH FV+ D
Sbjct: 541 QLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAED 600

Query: 621 RSHP 624
             HP
Sbjct: 601 TFHP 604



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 209/447 (46%), Gaps = 42/447 (9%)

Query: 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRV---- 219
            F   L+ C+   D+  G+ LH+  +K     + ++S+  + LY KC  +  ARRV    
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 220 ---------------------------FDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
                                      FDE+   D V +N +++ YA       A  +F 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR   +  D FT S ++ +CG   +  L RQ+H L +    D  V V  +L+  Y+KNG
Sbjct: 130 EMREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 313 NIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371
            + +A R+F  ++  ++ VSWN+MVV + Q+ +G +A++L  +M       D  TLAS+L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-IAGALQCFGSVKEPDL 430
           ++  ++       Q HA  IK+G      + + LI+ YSKCG  +    + F  +  PDL
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 431 VTWTSIIGAYA-FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489
           V W ++I  Y+ +  LS E++E F ++     RPD  + + V+SACS+    S+G +   
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 490 LMISDYHILPDSEHY--TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547
           L +     +P +       L  +  + G L +A  L  +MP E  + +  + I     HG
Sbjct: 368 LALK--LDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHG 424

Query: 548 SIGLAKWAAEKLLELEPSKPVNYALVS 574
               +    +++LE+  + P N   +S
Sbjct: 425 MGFQSLHLFQRMLEMGFT-PTNITFIS 450


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/596 (32%), Positives = 321/596 (53%), Gaps = 19/596 (3%)

Query: 59  THSAHSFYSQALKVSAKF-GFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYV--KCKAFD 115
           +HS   F    L    +  G  ++  QLH+  +K    N  S+ +++L +Y   +     
Sbjct: 7   SHSLQPFLPPNLHFPLQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQ 66

Query: 116 DMEKLFDEMRVRNIVTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACV 173
               LFD ++   +V+WN LI   I      +    F ++L D V  D  T   +L+ C 
Sbjct: 67  YAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVP-DSFTLPCVLKGCA 125

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
           +   ++ G+++H  +LK+GFG++ FV S+LV +Y KCG +E  R+VFD +  +D+V WN 
Sbjct: 126 RLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNS 185

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG-LVIKQ 292
           ++  YA  C   G I +   M  E  + D F+++ L++     G  +  R +   + I+ 
Sbjct: 186 LIDGYA-RC---GEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRN 241

Query: 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL 352
           S   +     ++++ Y K G+ + A  +FD M  +++V+WN+M+ G+ +N    +A+KL 
Sbjct: 242 SVSWN-----AMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLF 296

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             ML+    P+  T+   +S+   +      R VH+Y +K+G +    +   LI  YSKC
Sbjct: 297 EVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKC 356

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           GS+  AL+ F S+ +  L  WTS+I     HGL ++++E+F++M    ++P +I F+ VL
Sbjct: 357 GSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVL 416

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +ACSH G   +  RYF +M  DY I P  EHY CL D+L R G L EA D +  MPI+  
Sbjct: 417 NACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKAN 476

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
                + +   + HG+I + ++AA+ L++L P     Y ++SN+YA+   W  V ++R+M
Sbjct: 477 KVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREM 536

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEENNVSGH 648
           M+     K PGCS IE  G IH F+  D+SHPQ   +Y  LC    + ++ NV+GH
Sbjct: 537 MKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCE---MKKKLNVAGH 589


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/530 (33%), Positives = 287/530 (54%), Gaps = 18/530 (3%)

Query: 119 KLFDEMRVRNIVTWNTLISGIINCGG--NVTPYFRRMLLDNV---RLDHITFNSLLRACV 173
           K+   +   N  +WN  I G        +    +++ML       R DH T+  L + C 
Sbjct: 33  KILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCA 92

Query: 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNV 233
                 +G  +   + K+   L   V +A + ++  CG +E+AR+VFDE   RDLV WN 
Sbjct: 93  DLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNC 152

Query: 234 MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293
           +++ Y     G+ AI V+ +M  EG+K D  T   LV+SC  LG    G++ +  V    
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANG 212

Query: 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDG-------------MTAKNVVSWNTMVVGFG 340
             + + +A +L+DM++K G+I +A R+FD              M  K+VV WN M+ G  
Sbjct: 213 LRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSV 272

Query: 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400
           Q    ++A+ L ++M   +  PDE+T+   LS+C  L        +H Y  K+ +   ++
Sbjct: 273 QAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVA 332

Query: 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460
           +  +L++ Y+KCG+I+ AL  F  ++  + +T+T+IIG  A HG +  +I  F +M+   
Sbjct: 333 LGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAG 392

Query: 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520
           + PD I F+ +LSAC HGG++  G  YF+ M S +++ P  +HY+ + DLLGR GLL EA
Sbjct: 393 IAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEA 452

Query: 521 YDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580
             L+ SMP+E  +   GA +  C++HG++ L + AA+KLLEL+PS    Y L+  +Y   
Sbjct: 453 DKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEA 512

Query: 581 RCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMY 630
             W D  R R+MM +    K+PGCS IE+ G +  F+  D+S P++  +Y
Sbjct: 513 NMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKIY 562



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 195/423 (46%), Gaps = 39/423 (9%)

Query: 63  HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFD 122
           H  Y    KV A       G  +  H+ KL L     + N  +H++  C   ++  K+FD
Sbjct: 81  HFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFD 140

Query: 123 EMRVRNIVTWNTLISGI--INCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEV 180
           E  VR++V+WN LI+G   I  G      ++ M  + V+ D +T   L+ +C    D+  
Sbjct: 141 ESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNR 200

Query: 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-------------D 227
           G+  + ++   G  +   +++AL+D++ KCG + +ARR+FD +  R             D
Sbjct: 201 GKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKD 260

Query: 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287
           +V+WN M+           A+A+F  M+      D  T    +++C  LG+  +G  IH 
Sbjct: 261 VVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHR 320

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347
            + K S  L+V + TSLVDMYAK GNI +A  VF G+  +N +++  ++ G   +GD   
Sbjct: 321 YIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDAST 380

Query: 348 AVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE----- 402
           A+    +M+     PDE+T   +LS+C            H   I+ G   F  ++     
Sbjct: 381 AISYFNEMIDAGIAPDEITFIGLLSAC-----------CHGGMIQTGRDYFSQMKSRFNL 429

Query: 403 NALINAYS-------KCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFE 454
           N  +  YS       + G +  A +   S+  E D   W +++     HG  K   +  +
Sbjct: 430 NPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAK 489

Query: 455 KML 457
           K+L
Sbjct: 490 KLL 492


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 200/590 (33%), Positives = 294/590 (49%), Gaps = 74/590 (12%)

Query: 127 RNIVTWNTLISGIINC--GGNVTPYFRRMLLD-NVRLDHITFNSLLRACVQADDIEVGR- 182
           R+ V  N +IS              FR +L   ++R D  +F +LL A     +I V   
Sbjct: 119 RDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHC 178

Query: 183 -RLHSFILKVGFGLNCFVSSALVDLYGKCGFVE---DARRVFDEVLCRDL---------- 228
            +LH  +LK G G    V +ALV LY KC   E   DAR+V DE+  +D           
Sbjct: 179 AQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGY 238

Query: 229 ---------------------VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267
                                V+WN M+S Y  + +   A  +F  M LE +  D FTF+
Sbjct: 239 VRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFT 298

Query: 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDL----DVLVATSLVDMYAKNGNIDDACRVFDG 323
           S++++C  +G    G+ +HG +I+   +      + V  +LV  Y+K GNI  A R+FD 
Sbjct: 299 SVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDN 358

Query: 324 MTAKNVVSWNT-------------------------------MVVGFGQNGDGREAVKLL 352
           MT K+VVSWNT                               MV G+   G   +A+KL 
Sbjct: 359 MTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLF 418

Query: 353 RDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC 412
             M   +  P + T A  +++CG L      +Q+H + ++ G +   S  NALI  Y++C
Sbjct: 419 NKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARC 478

Query: 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472
           G++  A   F  +   D V+W ++I A   HG  +E++E+F++M++  + PD I+FL VL
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532
           +AC+H GLV EG RYF  M  D+ I+P  +HYT L DLLGR G + EA DL+ +MP EP 
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592
                A +  C+  G + L   AA++L ++ P     Y L+SN Y++  CW D AR+RK+
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKL 658

Query: 593 MRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642
           MRD    K PGCSWIE   ++H F+  D  HP+A  +Y  L  V   M +
Sbjct: 659 MRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRK 708



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 197/438 (44%), Gaps = 95/438 (21%)

Query: 84  QLHSHIMKLGLCNKLSLQNQVLHVYVKC---KAFDDMEKLFDEMRVRNIVT--------- 131
           QLH  ++K G    LS+ N ++ +Y+KC   +A  D  K+ DEM  ++ +T         
Sbjct: 180 QLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYV 239

Query: 132 ----------------------WNTLISGIINCGGNVTPY--FRRMLLDNVRLDHITFNS 167
                                 WN +ISG ++ G  V  +  FRRM+L+ V LD  TF S
Sbjct: 240 RRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 168 LLRACVQADDIEVGRRLHSFILKVGFGL----NCFVSSALVDLYGKCGFVEDARRVFDEV 223
           +L AC        G+ +H  I+++           V++ALV  Y KCG +  ARR+FD +
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 224 LCRDLVLWN-------------------------------VMVSCYALNCLGDGAIAVFN 252
             +D+V WN                               VMVS Y      + A+ +FN
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG 312
            MR E +K   +T++  + +CG LG+ K G+Q+HG +++  F+       +L+ MYA+ G
Sbjct: 420 KMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCG 479

Query: 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372
            + +A  +F  M   + VSWN M+   GQ+G GREA++L   M+     PD ++  ++L+
Sbjct: 480 AVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIE------------NALINAYSKCGSIAGALQ 420
           +C            H+  +  G + F S++              LI+   + G I  A  
Sbjct: 540 ACN-----------HSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARD 588

Query: 421 CFGSVK-EPDLVTWTSII 437
              ++  EP    W +I+
Sbjct: 589 LIKTMPFEPTPSIWEAIL 606



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 49/371 (13%)

Query: 197 CFVS-SALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCYALNCLGDGAIAVFNL 253
           C VS ++LV  Y     +  A   FD V    RD VL N ++S YA       A+AVF  
Sbjct: 87  CPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRS 146

Query: 254 MRLEG-MKGDYFTFSSLVNSCGTLG--SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310
           +   G ++ D ++F++L+++ G L   S +   Q+H  V+K      + V  +LV +Y K
Sbjct: 147 LLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMK 206

Query: 311 NGNID---DACRVFDGMTAKNVVSWNTMVVGFGQNGD----------------------- 344
             + +   DA +V D M  K+ ++W TMVVG+ + GD                       
Sbjct: 207 CESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMI 266

Query: 345 --------GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIK---N 393
                     EA +L R M+      DE T  S+LS+C ++ +    + VH   I+   N
Sbjct: 267 SGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPN 326

Query: 394 GV-QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452
            V +A L + NAL+  YSKCG+IA A + F ++   D+V+W +I+  Y       +++EV
Sbjct: 327 FVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512
           FE+M       + ++++ ++S   HGG   + L+ FN M S+ ++ P    Y       G
Sbjct: 387 FEEMPYK----NELSWMVMVSGYVHGGFAEDALKLFNKMRSE-NVKPCDYTYAGAIAACG 441

Query: 513 RVGLLVEAYDL 523
            +G L     L
Sbjct: 442 ELGALKHGKQL 452



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 141/321 (43%), Gaps = 45/321 (14%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLC----NKLSLQNQVLHVYVKCKAFDDMEKLF 121
           ++  L   A  G    GK +H  I++L         L + N ++  Y KC       ++F
Sbjct: 297 FTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIF 356

Query: 122 DEMRVRNIVTWNTLISGIINC------------------------------GG---NVTP 148
           D M ++++V+WNT++SG +                                GG   +   
Sbjct: 357 DNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALK 416

Query: 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208
            F +M  +NV+    T+   + AC +   ++ G++LH  I+++GF  +    +AL+ +Y 
Sbjct: 417 LFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYA 476

Query: 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268
           +CG V++A  +F  +   D V WN M+S    +  G  A+ +F+ M  EG+  D  +F +
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA----TSLVDMYAKNGNIDDACRVFDGM 324
           ++ +C   G    G +    + +   D  ++      T L+D+  + G I +A  +   M
Sbjct: 537 VLTACNHSGLVDEGFRYFESMKR---DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 325 TAKNVVS-WNTMVVGFGQNGD 344
             +   S W  ++ G   +GD
Sbjct: 594 PFEPTPSIWEAILSGCRTSGD 614



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 8/216 (3%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           Y+ A+    + G L+ GKQLH HI++LG     S  N ++ +Y +C A  +   +F  M 
Sbjct: 433 YAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP 492

Query: 126 VRNIVTWNTLIS--GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183
             + V+WN +IS  G    G      F RM+ + +  D I+F ++L AC  +  ++ G R
Sbjct: 493 NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFR 552

Query: 184 LHSFILKVGFGLNCFVS--SALVDLYGKCGFVEDARRVFDEVLCRDLV-LWNVMVS-CYA 239
                +K  FG+       + L+DL G+ G + +AR +   +       +W  ++S C  
Sbjct: 553 YFE-SMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 611

Query: 240 LNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCG 274
              +  GA A   L ++     G Y   S+  ++ G
Sbjct: 612 SGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAG 647


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/589 (29%), Positives = 331/589 (56%), Gaps = 20/589 (3%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           ++ GK +H+ ++  GL N L L N V  +Y +C    +  ++FD    R+ V+WN L+SG
Sbjct: 118 VRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSG 177

Query: 139 IINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQA------DDIEVGR---RLHSF 187
            +  G        F  M    +  +     S+++ C  +       D+  GR    +H  
Sbjct: 178 YVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGC 237

Query: 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD-- 245
           ++K G   + F++SA++D+Y K G + +A  +F  V   ++++ N M++ +      D  
Sbjct: 238 VVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVA 297

Query: 246 -GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL 304
             A+ +++ ++  GM+   F+FSS++ +C   G    G+QIHG V+K SF  DV + ++L
Sbjct: 298 REALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSAL 357

Query: 305 VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364
           +D+Y+ +G ++D  R F  +  ++VV W +++ G  QN    EA++L ++ ++    PD 
Sbjct: 358 IDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDV 417

Query: 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424
             ++S++++C SL+++    Q+   A+K+G   F ++ N+ I+  ++ G +  A + F  
Sbjct: 418 FAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQE 477

Query: 425 VKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-PDSIAFLEVLSACSHGGLVSE 483
           ++  D+V+W+++I ++A HG +++++ VF +ML   V  P+ I FL +L+ACSHGGLV E
Sbjct: 478 MESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDE 537

Query: 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543
           GLRY+ +M  +Y + P  +H TC+ DLLGR G L +A   +        +    + + +C
Sbjct: 538 GLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASC 597

Query: 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPG 603
           ++HG +   +  A+K+++LEP+   +Y ++ N+Y         ++ R +M++    K PG
Sbjct: 598 RIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPG 657

Query: 604 CSWIEIAGEIHTFVSSDRSHPQAVHMY----AMLCTVFGL-MEENNVSG 647
            SWIE++  +H+FV+ D+SHP++  +Y     M+  V G+   E +++G
Sbjct: 658 LSWIELSSGVHSFVAGDKSHPESKAIYRKVAEMVSKVAGISSREQDLAG 706



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 214/432 (49%), Gaps = 25/432 (5%)

Query: 64  SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDME--KLF 121
           +FY   L+  A    L     +H+H+ +      L L+N +L  Y +      +   +L 
Sbjct: 3   AFYLHLLRSCAA---LPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLL 59

Query: 122 DEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVR-----LDHITFNSLLRACVQAD 176
           DEM  RN V++N +I      G    P          R     +D  T+ + L AC +A 
Sbjct: 60  DEMPRRNAVSYNLVIVAYSRAG---LPALSLATFARARAWARVVDRFTYAAALAACSRAL 116

Query: 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVS 236
           D+  G+ +H+ ++  G G   F+S+++  +Y +CG + +ARRVFD    RD V WN ++S
Sbjct: 117 DVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLS 176

Query: 237 CYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC---------GTLGSSKLGRQIHG 287
            Y      +  + VF+LM   G+  + F   S++  C         G +G  ++   +HG
Sbjct: 177 GYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHG 236

Query: 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD--- 344
            V+K   D D+ +A++++DMYAK G + +A  +F  +   NV+  N M+ GF +      
Sbjct: 237 CVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADV 296

Query: 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA 404
            REA+ L  ++      P E + +SIL +C         +Q+H   +K+  Q  + I +A
Sbjct: 297 AREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSA 356

Query: 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464
           LI+ YS  G +    +CF S+ + D+V WTS+I     + L +E++ +F++ +   +RPD
Sbjct: 357 LIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPD 416

Query: 465 SIAFLEVLSACS 476
             A   V++AC+
Sbjct: 417 VFAMSSVMNACA 428


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 286/502 (56%), Gaps = 3/502 (0%)

Query: 132 WNTLISGIINCG--GNVTPYFRRML-LDNVRLDHITFNSLLRACVQADDIEVGRRLHSFI 188
           +N L+  +++ G   +    F  ML + +V  D  T    L++C +   ++VGR + ++ 
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 189 LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248
           +K G   + FV S+L+ +Y  C  V  A+ +FD V    +V+WN +++ Y  N      +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 249 AVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308
            +F  M   G+  D  T  S+V +CG +G +KLG+ +   V ++    +  + T+L+DMY
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368
           AK G +  A R+FDGM +++VV+W+ M+ G+ Q    REA+ L  +M      P++VT+ 
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325

Query: 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP 428
           S+LS+C  L      + VH+Y  +  +   + +  AL++ Y+KCG I  A++ F S+   
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385

Query: 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488
           +  TWT++I   A +G  +E++E+F  M   ++ P  + F+ VL ACSH  LV EG R+F
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445

Query: 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGS 548
           + M  DY I P +EHY C+ DLLGR GL+ EAY  + +MPIEP +    A + +C VH +
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505

Query: 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIE 608
           + + + A ++++ L PS   +Y L+SN+YAS   W + A +RK M+D    K PGCS IE
Sbjct: 506 VEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565

Query: 609 IAGEIHTFVSSDRSHPQAVHMY 630
           + G +  F + D  HPQ   +Y
Sbjct: 566 LDGVVVEFFAEDSDHPQLKEIY 587



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 209/401 (52%), Gaps = 16/401 (3%)

Query: 69  ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN 128
           ALK  ++   L  G+ + ++ +K GL     + + ++H+Y  C+     + LFD +    
Sbjct: 125 ALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENG 184

Query: 129 IVTWNTLISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186
           +V WN +I+  +  G    V   F+ ML   V  D IT  S++ AC +  D ++G+ +  
Sbjct: 185 VVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAE 244

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246
           ++ + G   N  + +AL+D+Y KCG +  ARR+FD +  RD+V W+ M+S Y        
Sbjct: 245 YVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 304

Query: 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVD 306
           A+A+F+ M+L  ++ +  T  S++++C  LG+ + G+ +H  + ++   L +++ T+LVD
Sbjct: 305 ALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVD 364

Query: 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366
            YAK G IDDA   F+ M  KN  +W  ++ G   NG GREA++L   M + S  P +VT
Sbjct: 365 FYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVT 424

Query: 367 LASILSSCGSLSISCETRQ-----VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421
              +L +C    +  E R+        Y IK   + +      +++   + G I  A Q 
Sbjct: 425 FIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHY----GCVVDLLGRAGLIDEAYQF 480

Query: 422 FGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461
             ++  EP+ V W +++ + A H    +++E+ E+ L   V
Sbjct: 481 IRTMPIEPNAVIWRALLSSCAVH----KNVEIGEEALKQIV 517



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 10/319 (3%)

Query: 75  KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT 134
           + G  + GK +  ++ + GL    +L   ++ +Y KC       +LFD M+ R++V W+ 
Sbjct: 232 RIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSA 291

Query: 135 LISGIINCGG--NVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
           +ISG             F  M L  V  + +T  S+L AC     +E G+ +HS+I +  
Sbjct: 292 MISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR 351

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
             L   + +ALVD Y KCG ++DA   F+ +  ++   W  ++   A N  G  A+ +F+
Sbjct: 352 LSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 411

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAK 310
            MR   ++    TF  ++ +C      + GR+ H   + Q + +         +VD+  +
Sbjct: 412 SMRKASIEPTDVTFIGVLMACSHSCLVEEGRR-HFDSMTQDYGIKPRAEHYGCVVDLLGR 470

Query: 311 NGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGD---GREAVKLLRDMLQGSFCPDEVT 366
            G ID+A +    M  + N V W  ++     + +   G EA+K +   L  S   D + 
Sbjct: 471 AGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVS-LNPSHSGDYIL 529

Query: 367 LASILSSCGSLSISCETRQ 385
           L++I +S G    +   R+
Sbjct: 530 LSNIYASVGQWKNAAMIRK 548



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           L   A  G L+ GK +HS+I +  L   + L   ++  Y KC   DD  + F+ M V+N 
Sbjct: 328 LSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNS 387

Query: 130 VTWNTLISGIINC--GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR-LHS 186
            TW  LI G+     G      F  M   ++    +TF  +L AC  +  +E GRR   S
Sbjct: 388 WTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDS 447

Query: 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV-LCRDLVLWNVMV-SCYALNCLG 244
                G          +VDL G+ G +++A +    + +  + V+W  ++ SC     + 
Sbjct: 448 MTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVE 507

Query: 245 DGAIAVFNLMRLE-GMKGDYFTFSSLVNSCGTLGSSKLGRQ 284
            G  A+  ++ L     GDY   S++  S G   ++ + R+
Sbjct: 508 IGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRK 548


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/522 (32%), Positives = 288/522 (55%), Gaps = 24/522 (4%)

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK----------- 209
           D   F SLLRA        + + LH+ ++++GF  + + ++AL+++Y K           
Sbjct: 75  DRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEF 134

Query: 210 -----------CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG 258
                         ++  R++FD +  RD+V WN +++  A N + + A+ +   M  E 
Sbjct: 135 PQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKEN 194

Query: 259 MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318
           ++ D FT SS++       +   G++IHG  I+  FD DV + +SL+DMYAK   ++ + 
Sbjct: 195 LRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSV 254

Query: 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378
             F  ++ ++ +SWN+++ G  QNG   + +   R ML+    P +V+ +S++ +C  L+
Sbjct: 255 CAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLT 314

Query: 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK--EPDLVTWTSI 436
                +Q+HAY I+ G      I ++L++ Y+KCG+I  A   F  ++  + D+V+WT+I
Sbjct: 315 ALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAI 374

Query: 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496
           I   A HG + +++ +FE+ML   V+P  +AF+ VL+ACSH GLV EG +YFN M  D+ 
Sbjct: 375 IMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFG 434

Query: 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556
           + P  EHY  + DLLGR G L EAYD +++M  EP        + AC+ H +I LA+   
Sbjct: 435 VAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVV 494

Query: 557 EKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616
            K+L ++P     + ++SN+Y++ + W D A+LR  MR     K P CSWIE+  ++HTF
Sbjct: 495 NKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTF 554

Query: 617 VSSDRSHPQAVHMYAMLCTVFGLMEENNVSGHCNVLDKEMDE 658
           ++ D+SHP    +   L  +   ME+       N +  ++DE
Sbjct: 555 LAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDE 596



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 205/422 (48%), Gaps = 32/422 (7%)

Query: 65  FYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKA----------- 113
            +   L+ S  F      + LH+ +++LG    L   N ++++Y K              
Sbjct: 78  LFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQA 137

Query: 114 -----------FDDMEKLFDEMRVRNIVTWNTLISGIINCG--GNVTPYFRRMLLDNVRL 160
                       D + KLFD M VR++V+WNT+I+G    G         + M  +N+R 
Sbjct: 138 RHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRP 197

Query: 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220
           D  T +S+L    +  ++  G+ +H + ++ GF  + F+ S+L+D+Y KC  VE +   F
Sbjct: 198 DSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAF 257

Query: 221 DEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSK 280
             +  RD + WN +++    N   D  +  F  M  E +K    +FSS++ +C  L +  
Sbjct: 258 HLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALN 317

Query: 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDG--MTAKNVVSWNTMVVG 338
           LG+Q+H  +I+  FD +  +A+SL+DMYAK GNI  A  +F+   M  +++VSW  +++G
Sbjct: 318 LGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMG 377

Query: 339 FGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQA 397
              +G   +AV L  +ML     P  V   ++L++C    +  E  +  ++     GV  
Sbjct: 378 CAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAP 437

Query: 398 FLSIENALINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456
            L    A+ +   + G +  A     ++ +EP    W++++ A   H    ++IE+ EK+
Sbjct: 438 GLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAH----KNIELAEKV 493

Query: 457 LS 458
           ++
Sbjct: 494 VN 495



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 139/269 (51%), Gaps = 22/269 (8%)

Query: 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290
           W  ++ CYA + L   ++A FNL+R  G+  D   F SL+ +        L + +H  VI
Sbjct: 44  WICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVI 103

Query: 291 KQSFDLDVLVATSLVDMYAK----------------NGN------IDDACRVFDGMTAKN 328
           +  F  D+  A +L++MY+K                N N      ID   ++FD M  ++
Sbjct: 104 RLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRD 163

Query: 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHA 388
           VVSWNT++ G  QNG   EA+ ++++M + +  PD  TL+SIL      +   + +++H 
Sbjct: 164 VVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHG 223

Query: 389 YAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448
           YAI++G    + I ++LI+ Y+KC  +  ++  F  +   D ++W SII     +G   +
Sbjct: 224 YAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQ 283

Query: 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSH 477
            +  F +ML   V+P  ++F  V+ AC+H
Sbjct: 284 GLGFFRRMLKEKVKPMQVSFSSVIPACAH 312


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 291/550 (52%), Gaps = 64/550 (11%)

Query: 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDA 216
           +RLD  T  SLL+ C  +  +  G+R+H  +   G      F+S+ L+++Y KCG   +A
Sbjct: 55  LRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 217 RRVFDEVLCRDLVLWNVMVSCYA------------------------------LNC-LGD 245
           R+VFD++  R+L  WN M+S YA                                C   D
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWD 174

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
            A+  ++  R  G++ + F+F+ ++  C  L    L RQ+HG ++   F  +V++++S++
Sbjct: 175 EALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVL 234

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGD--------------------- 344
           D Y K G + DA ++FD M+A++V++W TMV G+ + GD                     
Sbjct: 235 DAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTA 294

Query: 345 ----------GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394
                     G +A++L   M+     PD+ T +S L +C S++     +Q+HAY ++  
Sbjct: 295 LISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRIN 354

Query: 395 VQAFLSIENALINAYSKCGSIAGALQCFGSV-KEPDLVTWTSIIGAYAFHGLSKESIEVF 453
            Q    + +ALI+ YSKCGS+    + F  +  + D+V W +II A A HG  +E+I++ 
Sbjct: 355 FQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQML 414

Query: 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513
           + M+    +PD I F+ +L+ACSH GLV +GL +F  M  DY I+P  EHY CL DLLGR
Sbjct: 415 DDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGR 474

Query: 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573
            G   E  D L  MP +P      A +G C++HG I L + AAE+L+ELEP     Y L+
Sbjct: 475 AGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLL 534

Query: 574 SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           S++YA    W  V ++R++M +    K    SW+EI  ++H+F  SD SHP    +Y++L
Sbjct: 535 SSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVL 594

Query: 634 CTVFGLMEEN 643
             + G MEE+
Sbjct: 595 EQLAGQMEED 604



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 174/386 (45%), Gaps = 52/386 (13%)

Query: 66  YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR 125
           ++  L V  K   +   +Q+H  I+  G  + + L + VL  YVKC    D  KLFDEM 
Sbjct: 195 FAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMS 254

Query: 126 VRNIVTWNTLISGIINCGG---------------------------------NVTPYFRR 152
            R+++ W T++SG    G                                       F +
Sbjct: 255 ARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTK 314

Query: 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF 212
           M+L +VR D  TF+S L AC     ++ G+++H+++L++ F  N  V SAL+D+Y KCG 
Sbjct: 315 MMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGS 374

Query: 213 VEDARRVFDEVLCR-DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271
           +   R+VFD +  + D+VLWN ++S  A +  G+ AI + + M   G K D  TF  ++N
Sbjct: 375 LGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILN 434

Query: 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATS------LVDMYAKNGNIDDACRVFDGMT 325
           +C     S  G    GL   +S   D  +  S      L+D+  + G  ++     + M 
Sbjct: 435 AC-----SHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMP 489

Query: 326 AK-NVVSWNTMVVGFGQNGD---GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381
            K +   WN ++     +G    GR+A + L + L+       V L+SI +  G      
Sbjct: 490 YKPDDRVWNALLGVCRIHGHIELGRKAAERLIE-LEPQSSTAYVLLSSIYAVLGRWESVQ 548

Query: 382 ETRQV--HAYAIKNGVQAFLSIENAL 405
           + RQ+       K    ++L IEN +
Sbjct: 549 KVRQLMNERQVKKERAISWLEIENKV 574



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 161/355 (45%), Gaps = 55/355 (15%)

Query: 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH------GLVIKQSF 294
           N L +   ++ NL R  G++ D  T +SL+  C    + + G+++H      GL    +F
Sbjct: 38  NKLNEAVSSLENLAR-RGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTF 96

Query: 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV------------------------- 329
                ++  L++MYAK G   +A +VFD M+A+N+                         
Sbjct: 97  -----LSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDK 151

Query: 330 ------VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383
                 VSWNTMV+   Q G   EA++   +  Q     +  + A +L+ C  L     T
Sbjct: 152 MPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLT 211

Query: 384 RQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH 443
           RQVH   +  G  + + + +++++AY KCG +  A + F  +   D++ WT+++  YA  
Sbjct: 212 RQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKW 271

Query: 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503
           G  K + E+F +M       + +++  ++S  +  G+  + L  F  M+  +H+ PD   
Sbjct: 272 GDMKSANELFVEM----PEKNPVSWTALISGYARNGMGHKALELFTKMML-FHVRPDQFT 326

Query: 504 YT-----CLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553
           ++     C +    + G  + AY  L  +  +P +  + A I      GS+G+ +
Sbjct: 327 FSSCLCACASIASLKHGKQIHAY--LLRINFQPNTIVVSALIDMYSKCGSLGIGR 379


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/568 (31%), Positives = 299/568 (52%), Gaps = 24/568 (4%)

Query: 70  LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNI 129
           LK  A+      G++LH    K G  + + + N ++++Y KC        +FD+M  R++
Sbjct: 95  LKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDV 154

Query: 130 VTWNTLISGIINCG--GNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187
           V+W T++   +     G      R M    V+L  +   SL+       D++ GR +H +
Sbjct: 155 VSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGY 214

Query: 188 ILK-VG-FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245
           I++ VG   +   +++AL+D+Y K G +  A+R+FD +  R +V W VM++    +C  D
Sbjct: 215 IVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLD 274

Query: 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305
                FN M  E +  +  T  SL+  CG +G+  LG+  H  +++  F + + + T+L+
Sbjct: 275 EGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALI 334

Query: 306 DMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV 365
           DMY K G +  A  +F+G+  K+V  W+ ++  +       +   L  +ML     P+ V
Sbjct: 335 DMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNV 394

Query: 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425
           T+ S+LS C         +  HAY  ++G++  + +E ALIN Y+KCG +  A   F   
Sbjct: 395 TMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEA 454

Query: 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485
            + D+  W +++  ++ HG  KE++E+F +M SH V P+ I F+ +  ACSH GL+    
Sbjct: 455 MQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM---- 510

Query: 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKV 545
                           EHY CL DLLGR G L EA++++ +MP+ P +   GA + ACK+
Sbjct: 511 ----------------EHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKL 554

Query: 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCS 605
           H ++ L + AA K+LEL+P       L SN+YAS + W DV  +R+ M  +   K PG S
Sbjct: 555 HKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLS 614

Query: 606 WIEIAGEIHTFVSSDRSHPQAVHMYAML 633
           WIE++G +H F S D++  Q   +Y M+
Sbjct: 615 WIEVSGSVHHFKSGDKACTQTTKVYEMV 642



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 223/454 (49%), Gaps = 32/454 (7%)

Query: 79  LQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISG 138
           LQQ  QLH+H +K                      F +    F +        +N LIS 
Sbjct: 22  LQQTHQLHAHFIK--------------------TQFHNPHPFFSQSHFTPEANYNLLISS 61

Query: 139 IINCGGNVTP------YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192
             N   N  P      Y      D   LD+    SLL+AC QA   ++GR LH F  K G
Sbjct: 62  YTN---NHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNG 118

Query: 193 FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFN 252
           F  + FV +AL+++Y KCG +  AR VFD++  RD+V W  M+ CY  +     A+ +  
Sbjct: 119 FASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVR 178

Query: 253 LMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD--LDVLVATSLVDMYAK 310
            M+  G+K       SL+   G L   K GR +HG +++   D  ++V + T+L+DMY K
Sbjct: 179 EMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCK 238

Query: 311 NGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370
            G +  A R+FD ++ ++VVSW  M+ G  ++    E  K    ML+    P+E+TL S+
Sbjct: 239 GGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSL 298

Query: 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL 430
           ++ CG +      +  HAY ++NG    L++  ALI+ Y KCG +  A   F  VK+ D+
Sbjct: 299 ITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDV 358

Query: 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNL 490
             W+ +I AYA      +   +F +ML++ V+P+++  + +LS C+  G +  G ++ + 
Sbjct: 359 KIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLG-KWTHA 417

Query: 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLL 524
            I+ + +  D    T L ++  + G +  A  L 
Sbjct: 418 YINRHGLEVDVILETALINMYAKCGDVTIARSLF 451


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,087,366,198
Number of Sequences: 23463169
Number of extensions: 404387685
Number of successful extensions: 1320703
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8182
Number of HSP's successfully gapped in prelim test: 3067
Number of HSP's that attempted gapping in prelim test: 1128046
Number of HSP's gapped (non-prelim): 57832
length of query: 665
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 516
effective length of database: 8,863,183,186
effective search space: 4573402523976
effective search space used: 4573402523976
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 80 (35.4 bits)