BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044628
         (665 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
 pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
          Length = 800

 Score = 33.5 bits (75), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 22/138 (15%)

Query: 86  HSHIMKLG-LCNKLSLQNQVLHVYVKCKAFDDMEKLFDE-MRVRNIVTWNTLISGIINCG 143
           HS   K+G L N+L   ++ +H+Y K      +  +FD+ +R +NI    T+I+G +   
Sbjct: 657 HSFFHKIGSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNI----TVINGFMRSL 712

Query: 144 GNVTPYFRRMLLD-NVRL--------DHITFN-----SLLRACVQADDIEVGRR-LHSFI 188
                + R+ L D +V L        DH +FN      LLR      D E   + L   I
Sbjct: 713 EFNEKFVRKALEDLDVELLDAVLMSGDH-SFNPLFVKPLLRNISGNIDREASSKVLSKVI 771

Query: 189 LKVGFGLNCFVSSALVDL 206
             +GF  N  +S  L+++
Sbjct: 772 PTLGFSTNTKISKDLLEM 789


>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
 pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
           PROTEIN From Francisella Tularensis
          Length = 246

 Score = 28.9 bits (63), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 287 GLVIKQSFDLDVLVATSL---VDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343
           G+ ++  +D+  L A SL   VD+   N +I    ++ D    + + S N ++ GF Q G
Sbjct: 84  GMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGG 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,368,596
Number of Sequences: 62578
Number of extensions: 708743
Number of successful extensions: 1657
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 5
length of query: 665
length of database: 14,973,337
effective HSP length: 105
effective length of query: 560
effective length of database: 8,402,647
effective search space: 4705482320
effective search space used: 4705482320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)