Query 044628
Match_columns 665
No_of_seqs 817 out of 4442
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-107 1E-111 919.3 70.3 624 40-665 150-792 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.8E-93 3.8E-98 789.5 62.1 540 126-665 84-630 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.9E-83 6.2E-88 725.1 63.6 534 58-594 81-652 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4.7E-70 1E-74 602.9 51.6 439 58-499 118-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 5.3E-69 1.1E-73 596.1 58.8 500 95-602 367-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.5E-67 3.3E-72 584.4 57.0 503 58-563 365-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.7E-31 1.2E-35 305.0 60.1 522 62-593 328-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-30 8.2E-35 298.2 60.4 522 66-597 298-867 (899)
9 PRK11447 cellulose synthase su 99.9 5.4E-21 1.2E-25 222.6 58.6 411 171-595 278-739 (1157)
10 PRK11447 cellulose synthase su 99.9 4.9E-21 1.1E-25 222.9 56.4 526 62-596 61-700 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.5E-18 3.2E-23 193.1 56.7 517 63-597 78-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 3E-20 6.4E-25 183.3 36.1 379 196-585 115-508 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 1.9E-20 4.2E-25 184.5 28.9 419 168-599 54-488 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1.1E-17 2.4E-22 186.3 52.4 507 75-598 56-674 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 5.1E-18 1.1E-22 185.7 43.9 418 165-596 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 5.3E-19 1.2E-23 183.7 29.6 292 171-466 44-354 (389)
17 PRK11788 tetratricopeptide rep 99.8 6.8E-19 1.5E-23 182.9 28.6 288 273-603 45-354 (389)
18 PRK10049 pgaA outer membrane p 99.8 2.6E-16 5.6E-21 175.4 46.8 400 161-596 14-456 (765)
19 PRK15174 Vi polysaccharide exp 99.8 4.1E-17 9E-22 177.9 39.4 351 208-567 16-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.9E-21 177.7 44.2 374 194-599 12-425 (765)
21 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.7E-21 174.1 37.6 351 239-598 16-383 (656)
22 KOG2002 TPR-containing nuclear 99.8 1.2E-14 2.7E-19 151.7 41.8 522 67-597 166-746 (1018)
23 PRK14574 hmsH outer membrane p 99.8 1.5E-14 3.2E-19 158.2 44.4 186 408-593 301-510 (822)
24 TIGR00990 3a0801s09 mitochondr 99.8 7.5E-15 1.6E-19 160.8 39.6 388 199-597 129-538 (615)
25 PRK14574 hmsH outer membrane p 99.7 4.6E-14 9.9E-19 154.4 43.2 427 107-569 43-520 (822)
26 KOG4422 Uncharacterized conser 99.7 1.3E-13 2.8E-18 131.3 37.4 420 129-564 116-592 (625)
27 KOG4422 Uncharacterized conser 99.7 2.1E-13 4.5E-18 129.8 37.8 432 64-527 117-587 (625)
28 KOG2002 TPR-containing nuclear 99.7 2.8E-13 6.1E-18 141.8 42.2 519 72-599 208-801 (1018)
29 KOG2003 TPR repeat-containing 99.7 3.1E-14 6.7E-19 136.1 26.2 203 376-582 502-709 (840)
30 KOG0495 HAT repeat protein [RN 99.7 2.1E-11 4.6E-16 122.3 45.2 489 71-609 384-891 (913)
31 KOG0495 HAT repeat protein [RN 99.6 8.5E-11 1.8E-15 118.1 46.2 512 76-606 264-856 (913)
32 KOG2076 RNA polymerase III tra 99.6 3.3E-12 7.1E-17 133.1 33.1 326 277-606 153-522 (895)
33 PF13429 TPR_15: Tetratricopep 99.6 4E-15 8.6E-20 146.4 11.0 253 337-594 16-275 (280)
34 KOG4318 Bicoid mRNA stability 99.6 1.1E-11 2.3E-16 128.6 34.3 520 58-606 20-603 (1088)
35 PRK10747 putative protoheme IX 99.5 2.9E-11 6.3E-16 124.6 29.9 286 241-563 97-391 (398)
36 KOG1155 Anaphase-promoting com 99.5 1.7E-10 3.6E-15 111.7 32.6 352 194-594 161-534 (559)
37 KOG0547 Translocase of outer m 99.5 9.8E-11 2.1E-15 113.9 30.8 395 170-595 123-565 (606)
38 KOG2076 RNA polymerase III tra 99.5 2.6E-09 5.6E-14 112.0 43.1 341 75-419 151-546 (895)
39 KOG1915 Cell cycle control pro 99.5 3.3E-09 7.2E-14 103.0 40.6 479 74-595 84-624 (677)
40 KOG1126 DNA-binding cell divis 99.5 4.6E-12 1E-16 128.1 21.8 273 313-594 334-618 (638)
41 PRK10747 putative protoheme IX 99.5 3.9E-11 8.5E-16 123.6 29.0 275 311-595 97-389 (398)
42 KOG1126 DNA-binding cell divis 99.5 5E-12 1.1E-16 127.8 20.4 159 429-594 420-584 (638)
43 KOG2003 TPR repeat-containing 99.5 3.3E-10 7.2E-15 109.0 30.8 428 163-596 199-689 (840)
44 TIGR00540 hemY_coli hemY prote 99.5 2.2E-10 4.7E-15 118.8 32.3 289 239-559 95-396 (409)
45 KOG1155 Anaphase-promoting com 99.4 9.1E-10 2E-14 106.7 33.4 326 261-595 162-494 (559)
46 TIGR00540 hemY_coli hemY prote 99.4 9.2E-11 2E-15 121.5 27.3 282 208-527 95-396 (409)
47 KOG4318 Bicoid mRNA stability 99.4 1.4E-10 3E-15 120.5 26.7 431 147-595 10-556 (1088)
48 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.3E-17 129.1 10.9 251 303-561 13-276 (280)
49 KOG1915 Cell cycle control pro 99.4 6.1E-09 1.3E-13 101.2 35.4 389 209-606 85-510 (677)
50 TIGR02521 type_IV_pilW type IV 99.4 7.6E-11 1.7E-15 112.8 23.1 198 397-595 29-231 (234)
51 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.5E-14 102.7 29.7 284 241-559 97-387 (400)
52 KOG2047 mRNA splicing factor [ 99.4 1E-07 2.3E-12 96.3 42.6 268 66-357 141-453 (835)
53 COG2956 Predicted N-acetylgluc 99.4 2E-09 4.4E-14 99.7 27.8 311 240-616 47-367 (389)
54 KOG1173 Anaphase-promoting com 99.3 7.1E-09 1.5E-13 103.2 31.0 261 296-596 242-518 (611)
55 PF13041 PPR_2: PPR repeat fam 99.3 9.8E-12 2.1E-16 85.6 6.9 50 428-477 1-50 (50)
56 PF13041 PPR_2: PPR repeat fam 99.3 7.2E-12 1.6E-16 86.3 6.2 50 226-275 1-50 (50)
57 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.4E-14 111.2 24.3 231 365-595 200-478 (508)
58 KOG1174 Anaphase-promoting com 99.2 1.5E-07 3.2E-12 90.3 34.3 366 197-568 97-506 (564)
59 KOG4162 Predicted calmodulin-b 99.2 5.3E-08 1.2E-12 100.6 33.3 417 174-597 296-784 (799)
60 COG2956 Predicted N-acetylgluc 99.2 1.5E-08 3.2E-13 94.1 25.8 247 342-593 48-308 (389)
61 COG3071 HemY Uncharacterized e 99.2 1.1E-08 2.3E-13 98.0 25.5 274 311-594 97-388 (400)
62 KOG0547 Translocase of outer m 99.2 1.3E-07 2.9E-12 92.6 32.4 149 443-595 339-490 (606)
63 KOG2376 Signal recognition par 99.2 3.4E-07 7.4E-12 92.0 35.9 423 147-593 32-517 (652)
64 KOG1840 Kinesin light chain [C 99.2 6.9E-09 1.5E-13 106.5 23.6 232 299-561 200-478 (508)
65 PRK11189 lipoprotein NlpI; Pro 99.2 5.6E-09 1.2E-13 103.0 21.9 212 378-598 40-267 (296)
66 PRK12370 invasion protein regu 99.2 1.2E-08 2.5E-13 110.1 25.6 244 344-597 276-536 (553)
67 TIGR02521 type_IV_pilW type IV 99.1 6.7E-09 1.5E-13 99.2 20.4 164 429-596 30-198 (234)
68 KOG1129 TPR repeat-containing 99.1 2.7E-09 5.9E-14 98.7 16.3 188 407-597 264-459 (478)
69 KOG3785 Uncharacterized conser 99.1 8.2E-07 1.8E-11 83.6 32.3 468 72-602 31-520 (557)
70 COG3063 PilF Tfp pilus assembl 99.1 7.1E-09 1.5E-13 91.9 17.8 162 432-598 37-204 (250)
71 PRK12370 invasion protein regu 99.1 1.4E-08 3E-13 109.5 22.8 211 378-596 275-502 (553)
72 KOG2047 mRNA splicing factor [ 99.1 5E-06 1.1E-10 84.5 37.5 216 377-594 360-613 (835)
73 KOG1173 Anaphase-promoting com 99.0 2.4E-06 5.3E-11 85.6 34.2 264 269-541 250-530 (611)
74 KOG4162 Predicted calmodulin-b 99.0 2.2E-06 4.8E-11 89.0 33.5 438 93-568 318-789 (799)
75 KOG1174 Anaphase-promoting com 99.0 2.7E-06 5.8E-11 81.9 31.5 280 327-643 230-521 (564)
76 PF12569 NARP1: NMDA receptor- 99.0 4.9E-06 1.1E-10 86.9 36.1 411 171-592 13-516 (517)
77 PRK11189 lipoprotein NlpI; Pro 99.0 2E-07 4.3E-12 92.0 24.8 201 373-581 73-285 (296)
78 KOG1129 TPR repeat-containing 99.0 1.6E-08 3.4E-13 93.8 13.7 232 299-568 224-464 (478)
79 KOG0985 Vesicle coat protein c 99.0 2.5E-05 5.4E-10 83.3 38.6 461 101-593 609-1246(1666)
80 KOG1156 N-terminal acetyltrans 98.9 1E-05 2.2E-10 82.6 33.5 415 174-598 19-470 (700)
81 KOG0985 Vesicle coat protein c 98.9 3.5E-05 7.7E-10 82.2 37.7 475 69-595 844-1369(1666)
82 KOG3785 Uncharacterized conser 98.9 2.1E-06 4.6E-11 80.8 25.9 411 171-599 31-493 (557)
83 KOG2376 Signal recognition par 98.9 6.8E-05 1.5E-09 75.9 37.7 211 70-293 19-254 (652)
84 PF04733 Coatomer_E: Coatomer 98.9 3.1E-07 6.8E-12 89.2 20.6 156 405-567 108-270 (290)
85 PRK04841 transcriptional regul 98.9 0.00013 2.9E-09 84.8 46.2 150 207-356 351-518 (903)
86 KOG1156 N-terminal acetyltrans 98.9 8.9E-05 1.9E-09 75.9 37.8 446 66-559 11-508 (700)
87 KOG3616 Selective LIM binding 98.8 2.2E-05 4.9E-10 80.8 32.5 176 401-596 826-1024(1636)
88 COG3063 PilF Tfp pilus assembl 98.8 1.3E-06 2.8E-11 77.8 20.5 162 403-566 73-240 (250)
89 KOG3616 Selective LIM binding 98.8 3.7E-06 8E-11 86.3 26.4 234 337-606 714-947 (1636)
90 KOG0548 Molecular co-chaperone 98.8 4.5E-06 9.8E-11 83.4 26.4 215 369-597 229-456 (539)
91 PF12569 NARP1: NMDA receptor- 98.8 3.9E-06 8.4E-11 87.7 27.3 125 467-594 196-332 (517)
92 KOG0624 dsRNA-activated protei 98.8 1.6E-05 3.4E-10 74.9 27.5 287 304-596 44-370 (504)
93 cd05804 StaR_like StaR_like; a 98.8 1.3E-05 2.8E-10 82.2 29.7 295 300-597 8-337 (355)
94 KOG1125 TPR repeat-containing 98.7 3E-07 6.5E-12 92.3 15.7 197 398-596 318-527 (579)
95 PRK10370 formate-dependent nit 98.7 8.2E-07 1.8E-11 81.4 17.3 148 437-598 23-175 (198)
96 TIGR03302 OM_YfiO outer membra 98.7 1.3E-06 2.7E-11 83.6 19.4 60 538-597 171-233 (235)
97 PF04733 Coatomer_E: Coatomer 98.7 4E-07 8.7E-12 88.4 15.8 149 438-596 110-265 (290)
98 KOG1127 TPR repeat-containing 98.7 5.7E-05 1.2E-09 80.8 30.8 173 416-593 800-993 (1238)
99 KOG4340 Uncharacterized conser 98.7 3.7E-05 8E-10 71.0 25.3 417 156-596 4-443 (459)
100 PRK15359 type III secretion sy 98.6 6.5E-07 1.4E-11 77.6 13.4 93 504-596 27-121 (144)
101 KOG1127 TPR repeat-containing 98.6 2.1E-05 4.5E-10 84.0 26.6 382 193-592 487-909 (1238)
102 KOG0624 dsRNA-activated protei 98.6 0.00012 2.6E-09 69.1 28.6 329 231-598 41-396 (504)
103 KOG0548 Molecular co-chaperone 98.6 6.3E-05 1.4E-09 75.4 28.4 395 171-580 11-473 (539)
104 PF12854 PPR_1: PPR repeat 98.6 4.6E-08 9.9E-13 60.3 4.1 33 192-224 2-34 (34)
105 KOG3617 WD40 and TPR repeat-co 98.6 0.001 2.2E-08 70.1 37.1 49 548-597 1306-1360(1416)
106 PRK15359 type III secretion sy 98.6 1E-06 2.3E-11 76.3 13.8 123 451-579 14-138 (144)
107 KOG3617 WD40 and TPR repeat-co 98.6 6.2E-05 1.3E-09 78.7 28.0 358 195-593 724-1171(1416)
108 KOG1070 rRNA processing protei 98.6 4.5E-06 9.8E-11 91.8 20.3 198 396-598 1455-1665(1710)
109 PF12854 PPR_1: PPR repeat 98.6 8.7E-08 1.9E-12 59.1 4.3 34 292-325 1-34 (34)
110 cd05804 StaR_like StaR_like; a 98.6 0.00014 3.1E-09 74.4 30.4 21 542-562 316-336 (355)
111 KOG4340 Uncharacterized conser 98.5 3.6E-05 7.7E-10 71.1 21.7 304 264-591 11-334 (459)
112 PLN02789 farnesyltranstransfer 98.5 2.9E-05 6.3E-10 76.6 22.9 182 409-594 81-300 (320)
113 PRK15363 pathogenicity island 98.5 2.7E-06 5.8E-11 72.3 13.2 97 500-596 34-132 (157)
114 KOG1125 TPR repeat-containing 98.5 7.7E-06 1.7E-10 82.5 17.1 216 273-493 295-526 (579)
115 COG5010 TadD Flp pilus assembl 98.5 1.2E-05 2.5E-10 73.5 16.7 134 462-597 63-198 (257)
116 PRK04841 transcriptional regul 98.4 0.00083 1.8E-08 78.2 36.0 326 206-565 383-763 (903)
117 PRK10370 formate-dependent nit 98.4 2.3E-05 5.1E-10 71.8 18.4 155 406-571 23-182 (198)
118 KOG1128 Uncharacterized conser 98.4 9.1E-06 2E-10 84.1 16.7 187 394-595 393-581 (777)
119 PRK15179 Vi polysaccharide bio 98.4 2.4E-05 5.3E-10 85.0 20.5 133 429-565 85-220 (694)
120 KOG1914 mRNA cleavage and poly 98.4 0.0039 8.4E-08 63.0 34.3 430 159-593 17-536 (656)
121 TIGR03302 OM_YfiO outer membra 98.4 3E-05 6.5E-10 74.1 17.8 161 399-564 33-234 (235)
122 COG5010 TadD Flp pilus assembl 98.4 5.1E-05 1.1E-09 69.4 17.8 155 434-591 70-226 (257)
123 TIGR02552 LcrH_SycD type III s 98.3 9E-06 1.9E-10 70.0 12.1 98 500-597 16-115 (135)
124 COG4783 Putative Zn-dependent 98.3 7.5E-05 1.6E-09 74.3 19.2 113 477-591 318-432 (484)
125 KOG1128 Uncharacterized conser 98.3 0.00015 3.3E-09 75.4 22.1 216 294-527 394-613 (777)
126 PLN02789 farnesyltranstransfer 98.3 4.5E-05 9.7E-10 75.3 17.9 189 406-598 44-252 (320)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.7E-05 3.8E-10 79.6 14.6 123 467-594 171-295 (395)
128 PRK15179 Vi polysaccharide bio 98.3 0.00013 2.8E-09 79.5 21.8 142 395-540 82-229 (694)
129 KOG1070 rRNA processing protei 98.2 0.00027 5.8E-09 78.6 23.1 219 162-382 1458-1689(1710)
130 KOG3081 Vesicle coat complex C 98.2 0.0011 2.4E-08 60.8 23.4 225 331-566 43-275 (299)
131 COG4783 Putative Zn-dependent 98.2 0.00024 5.2E-09 70.8 19.5 144 432-597 308-455 (484)
132 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6.1E-11 53.2 4.2 35 229-263 1-35 (35)
133 TIGR00756 PPR pentatricopeptid 98.2 3.7E-06 7.9E-11 52.7 4.4 35 431-465 1-35 (35)
134 PRK14720 transcript cleavage f 98.1 0.00061 1.3E-08 75.1 23.2 43 536-578 226-268 (906)
135 KOG0550 Molecular chaperone (D 98.1 0.00014 2.9E-09 70.6 15.4 162 431-596 169-350 (486)
136 TIGR02552 LcrH_SycD type III s 98.1 0.0001 2.2E-09 63.4 13.5 113 452-568 5-120 (135)
137 KOG3060 Uncharacterized conser 98.1 0.00073 1.6E-08 61.5 18.4 166 402-570 55-228 (289)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.9E-09 73.4 15.5 125 402-531 172-298 (395)
139 PF09976 TPR_21: Tetratricopep 98.0 0.00015 3.1E-09 63.2 13.9 114 478-592 24-143 (145)
140 PF13812 PPR_3: Pentatricopept 98.0 8.5E-06 1.9E-10 50.6 4.2 34 228-261 1-34 (34)
141 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 50.0 4.5 33 431-463 2-34 (34)
142 cd00189 TPR Tetratricopeptide 98.0 7.8E-05 1.7E-09 59.1 10.4 94 503-596 2-97 (100)
143 KOG0553 TPR repeat-containing 98.0 2.8E-05 6.1E-10 72.5 7.9 119 448-581 76-197 (304)
144 PRK14720 transcript cleavage f 98.0 0.0055 1.2E-07 67.9 26.7 149 365-544 117-268 (906)
145 PF12895 Apc3: Anaphase-promot 97.9 1.1E-05 2.4E-10 62.6 4.5 78 514-592 2-83 (84)
146 KOG0553 TPR repeat-containing 97.9 0.00014 3E-09 68.0 12.1 100 437-541 88-190 (304)
147 PLN03088 SGT1, suppressor of 97.9 0.00012 2.5E-09 74.1 12.7 102 473-576 10-113 (356)
148 PF13414 TPR_11: TPR repeat; P 97.9 3E-05 6.5E-10 57.6 5.8 64 532-595 2-66 (69)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00017 3.6E-09 60.4 10.9 92 505-596 6-105 (119)
150 KOG3081 Vesicle coat complex C 97.8 0.005 1.1E-07 56.7 20.0 147 372-527 116-268 (299)
151 KOG3060 Uncharacterized conser 97.8 0.0015 3.2E-08 59.6 16.3 163 432-598 54-222 (289)
152 PF09976 TPR_21: Tetratricopep 97.8 0.00096 2.1E-08 58.0 15.2 125 432-560 14-145 (145)
153 COG4235 Cytochrome c biogenesi 97.8 0.00019 4.2E-09 67.5 11.3 106 498-603 153-263 (287)
154 KOG1914 mRNA cleavage and poly 97.8 0.052 1.1E-06 55.2 35.8 77 62-140 19-97 (656)
155 PF13432 TPR_16: Tetratricopep 97.8 5.3E-05 1.2E-09 55.4 5.8 59 539-597 3-61 (65)
156 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00034 7.3E-09 58.5 11.6 104 467-570 4-113 (119)
157 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.2E-10 47.3 3.2 31 229-259 1-31 (31)
158 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.8E-10 46.8 3.5 31 330-360 1-31 (31)
159 PRK02603 photosystem I assembl 97.8 0.0003 6.5E-09 63.3 11.2 82 501-582 35-121 (172)
160 PF14432 DYW_deaminase: DYW fa 97.7 1.8E-05 4E-10 64.8 2.6 51 603-665 2-64 (116)
161 CHL00033 ycf3 photosystem I as 97.7 0.0003 6.5E-09 63.1 10.5 94 500-593 34-139 (168)
162 PLN03088 SGT1, suppressor of 97.7 0.00049 1.1E-08 69.6 13.0 103 436-543 8-113 (356)
163 PF04840 Vps16_C: Vps16, C-ter 97.7 0.075 1.6E-06 52.5 28.0 106 405-527 183-288 (319)
164 COG3898 Uncharacterized membra 97.7 0.07 1.5E-06 52.0 26.2 241 341-595 132-391 (531)
165 PRK02603 photosystem I assembl 97.6 0.0013 2.9E-08 59.1 13.7 131 429-582 34-166 (172)
166 PRK10153 DNA-binding transcrip 97.6 0.0021 4.5E-08 68.1 17.0 65 532-597 419-483 (517)
167 PF05843 Suf: Suppressor of fo 97.6 0.0018 3.9E-08 63.1 15.0 133 431-566 2-140 (280)
168 KOG2053 Mitochondrial inherita 97.6 0.17 3.7E-06 54.9 39.1 123 75-232 21-149 (932)
169 PF07079 DUF1347: Protein of u 97.6 0.099 2.1E-06 52.2 32.5 269 260-538 220-530 (549)
170 cd00189 TPR Tetratricopeptide 97.6 0.00084 1.8E-08 53.0 10.2 88 475-564 10-99 (100)
171 PRK15331 chaperone protein Sic 97.6 0.0018 3.8E-08 55.7 12.1 89 507-595 43-133 (165)
172 KOG2053 Mitochondrial inherita 97.6 0.19 4.2E-06 54.5 39.3 62 537-598 440-504 (932)
173 PF13432 TPR_16: Tetratricopep 97.5 0.00034 7.4E-09 51.1 6.5 61 507-567 3-65 (65)
174 PF04840 Vps16_C: Vps16, C-ter 97.5 0.088 1.9E-06 52.0 25.2 111 467-594 179-289 (319)
175 PF14559 TPR_19: Tetratricopep 97.5 0.00014 3.1E-09 53.7 4.4 53 544-596 2-54 (68)
176 PF13371 TPR_9: Tetratricopept 97.5 0.00035 7.5E-09 52.5 6.6 57 541-597 3-59 (73)
177 PF13431 TPR_17: Tetratricopep 97.5 8.4E-05 1.8E-09 45.7 2.5 33 556-588 2-34 (34)
178 COG4700 Uncharacterized protei 97.5 0.018 3.9E-07 50.1 17.0 132 461-595 85-221 (251)
179 PRK10153 DNA-binding transcrip 97.5 0.004 8.8E-08 65.9 16.1 143 425-569 332-489 (517)
180 COG4700 Uncharacterized protei 97.4 0.0034 7.4E-08 54.3 12.3 105 493-597 81-190 (251)
181 PF12895 Apc3: Anaphase-promot 97.4 0.0005 1.1E-08 53.3 6.2 80 443-526 2-83 (84)
182 PF07079 DUF1347: Protein of u 97.4 0.19 4.2E-06 50.2 36.2 409 173-594 17-522 (549)
183 CHL00033 ycf3 photosystem I as 97.3 0.0039 8.5E-08 55.8 12.3 63 431-493 36-100 (168)
184 PF14559 TPR_19: Tetratricopep 97.3 0.00035 7.6E-09 51.6 4.3 48 478-527 4-51 (68)
185 PF13414 TPR_11: TPR repeat; P 97.3 0.00055 1.2E-08 50.7 5.4 65 500-564 2-69 (69)
186 PRK10866 outer membrane biogen 97.3 0.051 1.1E-06 51.7 19.6 171 407-594 40-239 (243)
187 PF14938 SNAP: Soluble NSF att 97.2 0.0083 1.8E-07 58.8 14.6 33 313-356 30-62 (282)
188 KOG2280 Vacuolar assembly/sort 97.2 0.18 4E-06 53.5 24.4 339 153-524 423-793 (829)
189 PF12688 TPR_5: Tetratrico pep 97.2 0.0052 1.1E-07 50.7 10.8 86 507-592 7-100 (120)
190 PF08579 RPM2: Mitochondrial r 97.2 0.0046 1E-07 49.0 9.6 81 230-310 27-116 (120)
191 KOG2041 WD40 repeat protein [G 97.2 0.42 9.1E-06 50.3 29.8 301 176-540 748-1064(1189)
192 PF08579 RPM2: Mitochondrial r 97.2 0.006 1.3E-07 48.4 9.8 79 434-513 29-116 (120)
193 PRK10866 outer membrane biogen 97.1 0.06 1.3E-06 51.2 18.8 56 304-359 38-99 (243)
194 PRK10803 tol-pal system protei 97.1 0.0035 7.6E-08 60.0 10.4 92 504-595 146-245 (263)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0014 3.1E-08 65.7 7.8 65 532-596 74-141 (453)
196 PF10037 MRP-S27: Mitochondria 97.1 0.0049 1.1E-07 62.6 11.7 118 194-311 63-186 (429)
197 PF06239 ECSIT: Evolutionarily 97.1 0.0052 1.1E-07 55.2 10.3 97 419-516 34-153 (228)
198 PF14938 SNAP: Soluble NSF att 97.1 0.014 3E-07 57.2 14.4 148 445-593 89-263 (282)
199 PF10037 MRP-S27: Mitochondria 97.1 0.0074 1.6E-07 61.3 12.4 120 258-377 61-186 (429)
200 PF05843 Suf: Suppressor of fo 97.0 0.0062 1.4E-07 59.4 11.2 128 466-595 2-135 (280)
201 KOG2280 Vacuolar assembly/sort 97.0 0.66 1.4E-05 49.5 26.9 113 465-593 684-796 (829)
202 KOG1130 Predicted G-alpha GTPa 97.0 0.0035 7.7E-08 61.0 8.5 128 467-594 197-342 (639)
203 KOG1538 Uncharacterized conser 96.9 0.092 2E-06 54.5 18.6 38 246-286 618-655 (1081)
204 PF13371 TPR_9: Tetratricopept 96.9 0.0028 6.1E-08 47.4 6.4 64 509-572 3-68 (73)
205 PRK15363 pathogenicity island 96.9 0.021 4.5E-07 49.0 12.1 92 404-496 40-134 (157)
206 KOG1538 Uncharacterized conser 96.9 0.15 3.3E-06 53.0 20.0 201 163-427 599-801 (1081)
207 PF13428 TPR_14: Tetratricopep 96.9 0.0016 3.4E-08 43.0 4.2 42 534-575 2-43 (44)
208 KOG2041 WD40 repeat protein [G 96.9 0.12 2.6E-06 54.1 19.1 130 406-556 767-901 (1189)
209 KOG0543 FKBP-type peptidyl-pro 96.9 0.0076 1.7E-07 59.2 10.2 63 534-596 258-320 (397)
210 PF06239 ECSIT: Evolutionarily 96.9 0.0087 1.9E-07 53.8 9.6 89 225-313 44-153 (228)
211 PF12688 TPR_5: Tetratrico pep 96.9 0.024 5.2E-07 46.8 11.6 92 436-527 7-101 (120)
212 KOG2796 Uncharacterized conser 96.8 0.1 2.2E-06 48.1 15.9 137 331-469 179-323 (366)
213 PF13281 DUF4071: Domain of un 96.8 0.17 3.7E-06 50.5 19.0 159 405-566 147-338 (374)
214 KOG0550 Molecular chaperone (D 96.8 0.29 6.3E-06 48.4 19.6 85 440-527 259-347 (486)
215 PRK10803 tol-pal system protei 96.6 0.031 6.7E-07 53.6 12.2 97 468-567 146-251 (263)
216 KOG2796 Uncharacterized conser 96.5 0.19 4.2E-06 46.4 15.4 165 403-567 140-320 (366)
217 KOG4555 TPR repeat-containing 96.5 0.026 5.7E-07 45.9 8.8 90 509-598 51-146 (175)
218 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.2 2.6E-05 44.7 28.4 132 431-566 398-535 (660)
219 COG0457 NrfG FOG: TPR repeat [ 96.4 0.87 1.9E-05 42.6 26.0 195 399-597 59-266 (291)
220 PF03704 BTAD: Bacterial trans 96.4 0.066 1.4E-06 46.5 11.9 61 535-595 64-124 (146)
221 PRK11906 transcriptional regul 96.4 0.057 1.2E-06 54.7 12.5 158 431-591 252-431 (458)
222 PF13424 TPR_12: Tetratricopep 96.2 0.0077 1.7E-07 45.7 4.5 61 534-594 6-73 (78)
223 PF13424 TPR_12: Tetratricopep 96.2 0.0079 1.7E-07 45.7 4.5 60 503-562 7-75 (78)
224 COG4235 Cytochrome c biogenesi 96.2 0.083 1.8E-06 50.2 11.9 110 428-540 154-267 (287)
225 KOG1130 Predicted G-alpha GTPa 96.2 0.028 6.1E-07 55.0 8.9 127 367-493 198-343 (639)
226 PF09205 DUF1955: Domain of un 96.1 0.61 1.3E-05 38.4 14.6 141 440-599 12-152 (161)
227 KOG0543 FKBP-type peptidyl-pro 96.1 0.2 4.3E-06 49.6 14.3 95 502-596 258-355 (397)
228 PF12921 ATP13: Mitochondrial 95.8 0.083 1.8E-06 44.1 9.2 50 496-545 47-100 (126)
229 PRK11906 transcriptional regul 95.8 0.41 8.9E-06 48.7 15.4 81 447-531 321-403 (458)
230 PF13525 YfiO: Outer membrane 95.8 0.42 9.1E-06 44.1 14.7 142 435-596 10-170 (203)
231 KOG1941 Acetylcholine receptor 95.7 0.19 4.1E-06 48.7 12.2 161 432-592 85-271 (518)
232 PF13512 TPR_18: Tetratricopep 95.7 0.25 5.4E-06 41.7 11.4 89 508-596 17-128 (142)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.06 1.3E-06 54.4 9.1 62 501-562 75-141 (453)
234 PF13525 YfiO: Outer membrane 95.7 0.91 2E-05 41.9 16.6 164 405-587 11-198 (203)
235 COG0457 NrfG FOG: TPR repeat [ 95.6 1.9 4.1E-05 40.2 25.1 163 399-565 95-268 (291)
236 PF12921 ATP13: Mitochondrial 95.5 0.17 3.6E-06 42.3 10.0 97 399-511 2-98 (126)
237 COG3898 Uncharacterized membra 95.4 3.1 6.6E-05 41.2 26.7 285 230-527 84-389 (531)
238 KOG4234 TPR repeat-containing 95.4 0.054 1.2E-06 47.8 6.7 89 510-598 104-199 (271)
239 PF04184 ST7: ST7 protein; In 95.4 1.8 3.9E-05 44.4 18.1 98 471-568 265-381 (539)
240 COG3118 Thioredoxin domain-con 95.2 0.72 1.6E-05 43.9 14.0 120 474-596 143-265 (304)
241 COG1729 Uncharacterized protei 95.2 0.13 2.9E-06 48.2 9.2 82 513-596 153-244 (262)
242 KOG3941 Intermediate in Toll s 95.2 0.2 4.3E-06 46.8 9.9 100 418-518 53-175 (406)
243 PF10300 DUF3808: Protein of u 95.1 1.1 2.4E-05 47.3 16.9 162 432-596 190-376 (468)
244 PF04184 ST7: ST7 protein; In 95.0 0.35 7.5E-06 49.3 12.0 151 444-606 182-334 (539)
245 PF03704 BTAD: Bacterial trans 94.9 0.25 5.4E-06 42.9 9.7 68 434-502 66-137 (146)
246 smart00299 CLH Clathrin heavy 94.8 1.7 3.8E-05 37.2 14.8 87 164-254 9-95 (140)
247 PRK15331 chaperone protein Sic 94.8 0.43 9.4E-06 41.3 10.4 91 472-565 44-136 (165)
248 PF00515 TPR_1: Tetratricopept 94.7 0.059 1.3E-06 32.9 3.8 32 534-565 2-33 (34)
249 KOG3941 Intermediate in Toll s 94.7 0.27 5.8E-06 46.0 9.4 98 216-313 53-173 (406)
250 KOG4648 Uncharacterized conser 94.6 0.074 1.6E-06 50.9 5.9 114 472-592 104-220 (536)
251 PF07719 TPR_2: Tetratricopept 94.6 0.088 1.9E-06 32.1 4.5 32 535-566 3-34 (34)
252 KOG4555 TPR repeat-containing 94.6 0.25 5.5E-06 40.4 7.9 90 474-565 52-147 (175)
253 smart00299 CLH Clathrin heavy 94.5 1.3 2.9E-05 37.9 13.3 63 468-543 72-135 (140)
254 KOG2610 Uncharacterized conser 94.4 1.2 2.5E-05 43.0 13.1 112 412-527 116-235 (491)
255 PF13512 TPR_18: Tetratricopep 94.3 1.4 3.1E-05 37.2 12.3 112 440-567 20-133 (142)
256 COG3118 Thioredoxin domain-con 94.3 3.4 7.5E-05 39.4 15.9 175 417-593 121-299 (304)
257 KOG1585 Protein required for f 94.3 4.4 9.6E-05 37.5 16.6 85 505-590 154-250 (308)
258 KOG2610 Uncharacterized conser 94.2 0.48 1E-05 45.5 10.2 160 441-603 114-283 (491)
259 COG4105 ComL DNA uptake lipopr 94.2 4.8 0.0001 37.7 16.4 58 539-596 173-233 (254)
260 COG1729 Uncharacterized protei 93.9 0.49 1.1E-05 44.5 9.6 92 433-527 145-241 (262)
261 PF08631 SPO22: Meiosis protei 93.5 7.9 0.00017 37.8 23.7 61 404-465 126-192 (278)
262 PF02259 FAT: FAT domain; Int 93.5 8.7 0.00019 38.9 19.4 151 427-580 143-305 (352)
263 KOG1258 mRNA processing protei 93.5 12 0.00025 39.6 26.0 120 466-587 298-420 (577)
264 PF13281 DUF4071: Domain of un 93.5 7.1 0.00015 39.3 17.4 68 304-371 147-224 (374)
265 COG4105 ComL DNA uptake lipopr 93.3 7.2 0.00016 36.6 19.7 170 397-567 33-238 (254)
266 KOG0890 Protein kinase of the 93.2 28 0.00061 43.2 29.8 63 533-597 1670-1732(2382)
267 PF10300 DUF3808: Protein of u 93.2 1.2 2.6E-05 47.0 12.5 143 450-596 177-334 (468)
268 KOG2066 Vacuolar assembly/sort 93.0 16 0.00035 39.8 24.1 101 170-275 364-467 (846)
269 PF04053 Coatomer_WDAD: Coatom 92.7 2.1 4.5E-05 44.6 13.1 102 204-322 325-426 (443)
270 PRK09687 putative lyase; Provi 92.7 10 0.00023 36.9 26.5 78 296-375 35-116 (280)
271 PF04053 Coatomer_WDAD: Coatom 92.7 2.9 6.4E-05 43.5 14.1 104 407-528 326-429 (443)
272 PF09613 HrpB1_HrpK: Bacterial 92.7 4.6 0.0001 35.0 12.9 91 472-565 17-109 (160)
273 PRK11619 lytic murein transgly 92.7 19 0.00041 39.8 30.6 73 304-378 105-177 (644)
274 PF13176 TPR_7: Tetratricopept 92.6 0.23 5E-06 30.8 3.8 26 569-594 1-26 (36)
275 PF09613 HrpB1_HrpK: Bacterial 92.4 1 2.2E-05 38.9 8.6 54 544-597 21-74 (160)
276 KOG2066 Vacuolar assembly/sort 92.4 19 0.00042 39.2 21.3 164 74-256 367-533 (846)
277 PF09205 DUF1955: Domain of un 92.4 5.5 0.00012 33.0 12.1 118 172-293 12-150 (161)
278 KOG1920 IkappaB kinase complex 92.0 27 0.00059 40.1 23.5 84 336-430 972-1057(1265)
279 KOG1258 mRNA processing protei 92.0 19 0.0004 38.2 30.3 181 398-581 296-489 (577)
280 TIGR02561 HrpB1_HrpK type III 92.0 1.2 2.5E-05 37.9 8.2 54 544-597 21-74 (153)
281 PF13428 TPR_14: Tetratricopep 91.6 0.34 7.4E-06 31.7 3.9 32 567-598 1-32 (44)
282 PF13181 TPR_8: Tetratricopept 91.5 0.33 7.1E-06 29.5 3.6 31 535-565 3-33 (34)
283 PF04097 Nic96: Nup93/Nic96; 91.5 25 0.00055 38.7 22.8 87 235-326 265-355 (613)
284 PF02259 FAT: FAT domain; Int 91.4 7.9 0.00017 39.3 15.9 64 532-595 145-212 (352)
285 PF13170 DUF4003: Protein of u 91.4 4.7 0.0001 39.5 13.2 93 415-510 119-226 (297)
286 KOG2114 Vacuolar assembly/sort 91.3 27 0.00059 38.5 25.1 53 507-560 711-763 (933)
287 KOG1920 IkappaB kinase complex 91.1 34 0.00073 39.4 23.9 126 312-457 894-1026(1265)
288 KOG2114 Vacuolar assembly/sort 91.1 28 0.0006 38.4 21.1 152 59-226 360-519 (933)
289 COG4785 NlpI Lipoprotein NlpI, 91.0 12 0.00026 34.1 14.2 180 410-597 76-267 (297)
290 PF07035 Mic1: Colon cancer-as 90.8 6.9 0.00015 34.4 12.1 134 147-292 14-149 (167)
291 COG3629 DnrI DNA-binding trans 90.5 1.7 3.8E-05 41.6 9.0 75 400-474 154-236 (280)
292 KOG1941 Acetylcholine receptor 90.5 4.7 0.0001 39.5 11.7 218 310-527 18-272 (518)
293 KOG4648 Uncharacterized conser 90.5 0.81 1.8E-05 44.1 6.6 87 437-534 104-199 (536)
294 PRK09687 putative lyase; Provi 90.5 18 0.00039 35.2 27.2 74 398-476 205-278 (280)
295 PRK15180 Vi polysaccharide bio 90.0 5.6 0.00012 40.4 12.1 88 476-565 334-423 (831)
296 KOG1586 Protein required for f 90.0 15 0.00032 34.0 13.6 95 503-597 115-225 (288)
297 COG4649 Uncharacterized protei 89.5 6.4 0.00014 34.4 10.5 23 303-325 172-194 (221)
298 PF07035 Mic1: Colon cancer-as 89.4 14 0.00031 32.5 13.7 133 84-256 15-148 (167)
299 PF13176 TPR_7: Tetratricopept 89.4 0.63 1.4E-05 28.8 3.5 28 535-562 1-28 (36)
300 PF07721 TPR_4: Tetratricopept 89.3 0.53 1.2E-05 26.6 2.9 24 568-591 2-25 (26)
301 COG2976 Uncharacterized protei 89.2 16 0.00035 32.7 13.9 110 448-565 70-191 (207)
302 PF13170 DUF4003: Protein of u 88.8 9.2 0.0002 37.5 12.8 61 346-406 160-224 (297)
303 PF04910 Tcf25: Transcriptiona 87.9 6.8 0.00015 39.7 11.6 64 532-595 99-167 (360)
304 PF07719 TPR_2: Tetratricopept 87.8 0.83 1.8E-05 27.5 3.3 29 568-596 2-30 (34)
305 COG5107 RNA14 Pre-mRNA 3'-end 87.6 36 0.00077 34.8 33.9 144 399-547 397-549 (660)
306 PF10602 RPN7: 26S proteasome 87.5 12 0.00027 33.4 11.9 60 433-492 39-100 (177)
307 COG3629 DnrI DNA-binding trans 87.4 2.6 5.7E-05 40.4 7.8 59 537-595 157-215 (280)
308 PF06552 TOM20_plant: Plant sp 87.3 2.1 4.5E-05 37.7 6.4 34 549-582 51-84 (186)
309 PF10602 RPN7: 26S proteasome 87.3 5.2 0.00011 35.8 9.4 94 400-493 37-141 (177)
310 KOG1586 Protein required for f 87.1 25 0.00054 32.6 15.1 90 479-568 128-230 (288)
311 PRK10941 hypothetical protein; 87.1 4.8 0.0001 38.7 9.5 62 536-597 184-245 (269)
312 KOG1308 Hsp70-interacting prot 86.6 0.45 9.8E-06 46.0 2.3 90 513-602 126-217 (377)
313 PF00515 TPR_1: Tetratricopept 86.5 0.97 2.1E-05 27.3 3.1 30 568-597 2-31 (34)
314 KOG4642 Chaperone-dependent E3 85.7 2.6 5.6E-05 38.8 6.4 83 475-560 20-105 (284)
315 KOG4279 Serine/threonine prote 85.3 29 0.00062 37.8 14.4 100 440-566 297-399 (1226)
316 KOG1585 Protein required for f 85.2 15 0.00034 34.1 11.0 20 438-457 39-58 (308)
317 PF10345 Cohesin_load: Cohesin 84.8 68 0.0015 35.5 29.9 185 410-594 372-604 (608)
318 PF13181 TPR_8: Tetratricopept 84.8 1.9 4.1E-05 26.0 3.8 28 568-595 2-29 (34)
319 KOG4570 Uncharacterized conser 84.7 7.1 0.00015 37.5 9.0 97 393-493 58-163 (418)
320 PF13374 TPR_10: Tetratricopep 84.4 1.9 4E-05 27.4 3.8 28 568-595 3-30 (42)
321 PF14853 Fis1_TPR_C: Fis1 C-te 84.3 2.4 5.1E-05 29.0 4.3 33 539-571 7-39 (53)
322 PF00637 Clathrin: Region in C 84.3 1.7 3.6E-05 37.4 4.6 50 236-285 15-64 (143)
323 KOG1464 COP9 signalosome, subu 84.2 38 0.00082 32.0 16.7 239 312-556 41-326 (440)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 6.6 0.00014 30.5 6.9 62 445-508 22-83 (103)
325 TIGR02508 type_III_yscG type I 84.1 17 0.00037 28.5 9.1 87 177-267 20-106 (115)
326 KOG4234 TPR repeat-containing 84.0 12 0.00027 33.5 9.5 97 476-574 106-209 (271)
327 COG2976 Uncharacterized protei 84.0 28 0.00061 31.3 11.7 89 508-597 96-189 (207)
328 KOG0276 Vesicle coat complex C 83.8 23 0.00051 37.4 12.8 150 410-593 597-747 (794)
329 PF00637 Clathrin: Region in C 83.8 0.66 1.4E-05 40.0 1.9 85 167-254 12-96 (143)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 6.8 0.00015 30.4 6.8 55 519-573 28-82 (103)
331 PF13174 TPR_6: Tetratricopept 83.3 1.4 3E-05 26.3 2.7 26 570-595 3-28 (33)
332 PF13431 TPR_17: Tetratricopep 83.2 2.2 4.8E-05 25.9 3.5 30 288-318 4-33 (34)
333 PF02284 COX5A: Cytochrome c o 82.6 8 0.00017 30.4 6.9 56 518-573 30-85 (108)
334 PF13174 TPR_6: Tetratricopept 82.2 2.6 5.5E-05 25.0 3.6 29 538-566 5-33 (33)
335 smart00028 TPR Tetratricopepti 82.1 3 6.5E-05 23.9 4.0 28 537-564 5-32 (34)
336 PF02284 COX5A: Cytochrome c o 82.0 6.5 0.00014 30.9 6.3 60 448-509 28-87 (108)
337 PRK12798 chemotaxis protein; R 81.5 66 0.0014 32.8 22.9 179 412-593 125-321 (421)
338 KOG1498 26S proteasome regulat 81.4 63 0.0014 32.5 14.8 109 505-617 135-262 (439)
339 KOG0545 Aryl-hydrocarbon recep 81.2 6.8 0.00015 36.3 7.2 89 509-597 186-294 (329)
340 TIGR02561 HrpB1_HrpK type III 81.2 14 0.00031 31.5 8.5 70 473-545 18-89 (153)
341 PRK13800 putative oxidoreducta 81.0 1.2E+02 0.0026 35.5 23.7 254 319-594 625-879 (897)
342 PF11207 DUF2989: Protein of u 80.9 9.5 0.00021 34.5 8.0 75 512-587 118-198 (203)
343 PRK15180 Vi polysaccharide bio 80.9 11 0.00025 38.3 9.2 134 407-545 297-437 (831)
344 COG4649 Uncharacterized protei 80.8 39 0.00085 29.8 15.9 122 440-561 68-195 (221)
345 TIGR02508 type_III_yscG type I 80.7 26 0.00055 27.6 9.6 62 407-471 47-108 (115)
346 KOG1550 Extracellular protein 80.4 52 0.0011 35.8 15.2 150 442-598 261-428 (552)
347 PHA02875 ankyrin repeat protei 79.2 85 0.0018 32.6 16.3 200 148-364 16-230 (413)
348 KOG4570 Uncharacterized conser 79.2 15 0.00031 35.6 8.9 101 192-293 59-165 (418)
349 COG1747 Uncharacterized N-term 79.0 88 0.0019 32.7 19.2 159 404-569 71-241 (711)
350 KOG0376 Serine-threonine phosp 78.8 2 4.4E-05 43.7 3.4 94 473-569 12-108 (476)
351 PF13929 mRNA_stabil: mRNA sta 78.5 66 0.0014 31.1 14.0 64 158-221 198-262 (292)
352 COG4455 ImpE Protein of avirul 78.3 8.9 0.00019 34.9 6.8 64 504-567 4-69 (273)
353 PF13374 TPR_10: Tetratricopep 77.9 5.4 0.00012 25.2 4.3 28 431-458 3-30 (42)
354 COG3947 Response regulator con 77.5 8 0.00017 36.8 6.6 60 536-595 282-341 (361)
355 COG4785 NlpI Lipoprotein NlpI, 76.5 4.9 0.00011 36.4 4.8 113 474-590 74-189 (297)
356 KOG0551 Hsp90 co-chaperone CNS 75.9 15 0.00032 35.8 8.1 90 504-593 84-179 (390)
357 PF14561 TPR_20: Tetratricopep 75.8 8.4 0.00018 29.9 5.5 43 554-596 9-51 (90)
358 PF08631 SPO22: Meiosis protei 75.4 83 0.0018 30.6 23.8 19 439-457 255-273 (278)
359 KOG2422 Uncharacterized conser 75.0 60 0.0013 34.4 12.5 54 541-594 350-405 (665)
360 PF07721 TPR_4: Tetratricopept 74.9 5.7 0.00012 22.3 3.3 21 505-525 5-25 (26)
361 PF13762 MNE1: Mitochondrial s 74.8 20 0.00044 30.6 7.8 76 101-176 42-129 (145)
362 PF09986 DUF2225: Uncharacteri 74.5 19 0.00041 33.4 8.4 63 535-597 120-195 (214)
363 PF04190 DUF410: Protein of un 74.4 85 0.0018 30.2 13.6 82 397-493 88-169 (260)
364 PHA02875 ankyrin repeat protei 72.3 1E+02 0.0022 32.1 14.5 196 86-297 18-229 (413)
365 PF04910 Tcf25: Transcriptiona 72.2 79 0.0017 32.2 12.9 53 472-527 110-165 (360)
366 COG4455 ImpE Protein of avirul 72.1 82 0.0018 29.0 11.6 125 432-568 3-140 (273)
367 PF11207 DUF2989: Protein of u 72.1 26 0.00057 31.7 8.3 73 447-520 123-197 (203)
368 smart00028 TPR Tetratricopepti 71.5 7.6 0.00017 22.0 3.6 29 568-596 2-30 (34)
369 smart00386 HAT HAT (Half-A-TPR 70.5 7.9 0.00017 22.6 3.5 30 547-576 1-30 (33)
370 PF06552 TOM20_plant: Plant sp 69.9 15 0.00033 32.5 6.2 43 549-598 96-138 (186)
371 PRK13342 recombination factor 69.7 1.4E+02 0.003 31.1 14.5 101 260-378 173-279 (413)
372 KOG3807 Predicted membrane pro 69.4 49 0.0011 32.3 9.8 21 551-571 380-400 (556)
373 KOG0890 Protein kinase of the 68.1 3.4E+02 0.0074 34.6 28.5 154 171-335 1392-1552(2382)
374 PRK10941 hypothetical protein; 67.7 35 0.00077 32.9 8.8 67 505-571 185-253 (269)
375 KOG1464 COP9 signalosome, subu 66.9 1.2E+02 0.0026 28.9 17.2 182 341-522 39-252 (440)
376 KOG0276 Vesicle coat complex C 66.7 51 0.0011 35.0 10.0 98 208-322 648-745 (794)
377 KOG4507 Uncharacterized conser 65.3 23 0.00051 37.3 7.3 97 477-576 619-719 (886)
378 TIGR03504 FimV_Cterm FimV C-te 65.2 11 0.00025 24.5 3.4 27 571-597 3-29 (44)
379 PF04097 Nic96: Nup93/Nic96; 65.1 2.3E+02 0.0049 31.4 21.1 210 303-527 116-353 (613)
380 COG1747 Uncharacterized N-term 64.0 2E+02 0.0043 30.3 18.8 159 328-493 65-233 (711)
381 KOG3364 Membrane protein invol 63.9 82 0.0018 26.5 8.8 70 498-567 29-105 (149)
382 PF13934 ELYS: Nuclear pore co 63.4 1.3E+02 0.0028 28.3 11.5 106 433-547 79-186 (226)
383 COG4976 Predicted methyltransf 61.8 13 0.00027 34.3 4.2 57 510-566 4-62 (287)
384 PF09477 Type_III_YscG: Bacter 61.8 82 0.0018 25.3 10.0 86 278-367 21-106 (116)
385 PF10579 Rapsyn_N: Rapsyn N-te 61.7 22 0.00047 26.6 4.7 19 504-522 46-64 (80)
386 PF10579 Rapsyn_N: Rapsyn N-te 61.5 21 0.00046 26.7 4.6 46 442-487 18-65 (80)
387 PF14853 Fis1_TPR_C: Fis1 C-te 61.2 38 0.00082 23.2 5.5 27 570-596 4-30 (53)
388 PF09477 Type_III_YscG: Bacter 61.2 85 0.0018 25.2 9.0 86 380-469 22-107 (116)
389 KOG4507 Uncharacterized conser 61.2 47 0.001 35.2 8.5 133 462-597 568-706 (886)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 60.2 58 0.0013 27.2 7.8 42 551-592 81-124 (126)
391 PF12862 Apc5: Anaphase-promot 59.5 31 0.00066 27.0 5.7 53 543-595 8-69 (94)
392 PF12968 DUF3856: Domain of Un 58.9 58 0.0013 26.7 6.9 58 536-593 58-126 (144)
393 PF07163 Pex26: Pex26 protein; 58.6 86 0.0019 30.1 9.1 86 234-321 89-181 (309)
394 COG5159 RPN6 26S proteasome re 58.3 1.2E+02 0.0025 29.2 9.9 125 335-459 9-154 (421)
395 COG2909 MalT ATP-dependent tra 58.0 3.3E+02 0.0071 31.0 23.4 318 236-561 355-725 (894)
396 COG3947 Response regulator con 57.8 1.9E+02 0.0041 28.1 13.4 66 301-366 282-355 (361)
397 KOG2300 Uncharacterized conser 57.7 2.5E+02 0.0053 29.4 24.6 356 234-595 13-473 (629)
398 PF11768 DUF3312: Protein of u 57.7 1.2E+02 0.0025 32.3 10.8 55 404-458 413-472 (545)
399 PF09670 Cas_Cas02710: CRISPR- 57.6 1.5E+02 0.0033 30.4 11.9 52 441-493 142-197 (379)
400 PF14863 Alkyl_sulf_dimr: Alky 57.1 42 0.00091 28.7 6.4 66 517-585 57-122 (141)
401 TIGR03504 FimV_Cterm FimV C-te 56.9 22 0.00047 23.2 3.6 25 168-192 5-29 (44)
402 COG4976 Predicted methyltransf 55.7 25 0.00055 32.4 5.0 57 544-600 6-62 (287)
403 cd08819 CARD_MDA5_2 Caspase ac 55.1 80 0.0017 24.2 6.8 65 181-247 21-85 (88)
404 KOG4077 Cytochrome c oxidase, 54.7 68 0.0015 26.5 6.8 59 448-508 67-125 (149)
405 PF11846 DUF3366: Domain of un 54.7 44 0.00096 30.4 6.9 34 531-564 142-175 (193)
406 KOG4077 Cytochrome c oxidase, 54.0 63 0.0014 26.7 6.5 55 518-572 69-123 (149)
407 PF07720 TPR_3: Tetratricopept 53.7 43 0.00094 20.7 4.4 30 536-565 4-35 (36)
408 KOG4279 Serine/threonine prote 53.6 37 0.0008 37.0 6.5 146 432-593 203-370 (1226)
409 PF13762 MNE1: Mitochondrial s 53.4 1.5E+02 0.0032 25.5 10.8 51 428-478 77-128 (145)
410 PF07163 Pex26: Pex26 protein; 52.8 1.6E+02 0.0036 28.3 9.9 88 437-527 90-184 (309)
411 KOG4642 Chaperone-dependent E3 52.5 1.6E+02 0.0034 27.7 9.5 81 409-491 20-104 (284)
412 KOG3824 Huntingtin interacting 52.1 28 0.0006 33.5 4.9 61 511-571 126-188 (472)
413 PF12862 Apc5: Anaphase-promot 52.0 50 0.0011 25.8 5.8 25 539-563 47-71 (94)
414 COG4941 Predicted RNA polymera 51.3 2.6E+02 0.0056 27.8 12.8 130 427-568 261-400 (415)
415 KOG0687 26S proteasome regulat 50.4 2.6E+02 0.0057 27.6 12.5 62 502-563 105-174 (393)
416 PF14561 TPR_20: Tetratricopep 50.1 1.2E+02 0.0026 23.5 8.1 62 532-593 21-85 (90)
417 PF11846 DUF3366: Domain of un 49.4 57 0.0012 29.6 6.7 51 477-527 120-170 (193)
418 KOG3364 Membrane protein invol 48.6 1.7E+02 0.0036 24.8 9.4 69 462-532 29-103 (149)
419 PF10366 Vps39_1: Vacuolar sor 48.3 79 0.0017 25.5 6.5 27 331-357 41-67 (108)
420 PF10366 Vps39_1: Vacuolar sor 47.7 84 0.0018 25.4 6.5 27 432-458 41-67 (108)
421 PRK13800 putative oxidoreducta 47.3 5.3E+02 0.012 30.2 28.1 254 218-493 625-880 (897)
422 PF14689 SPOB_a: Sensor_kinase 46.1 42 0.00092 23.8 4.1 44 448-493 8-51 (62)
423 cd08819 CARD_MDA5_2 Caspase ac 45.8 1.4E+02 0.003 23.0 6.9 39 310-349 48-86 (88)
424 KOG0403 Neoplastic transformat 45.7 3.7E+02 0.0079 27.9 18.3 58 403-460 513-573 (645)
425 PF11848 DUF3368: Domain of un 45.5 63 0.0014 21.5 4.6 34 172-205 12-45 (48)
426 PRK10564 maltose regulon perip 44.8 42 0.00091 32.5 5.0 42 431-472 258-299 (303)
427 PF06957 COPI_C: Coatomer (COP 44.1 1.6E+02 0.0034 30.5 9.3 43 524-566 289-333 (422)
428 PF04090 RNA_pol_I_TF: RNA pol 43.9 1.2E+02 0.0025 27.7 7.4 90 535-624 43-133 (199)
429 PF11838 ERAP1_C: ERAP1-like C 43.7 3.4E+02 0.0073 26.9 16.6 164 414-577 55-246 (324)
430 PF08424 NRDE-2: NRDE-2, neces 43.6 3.5E+02 0.0075 27.0 15.4 114 446-563 47-184 (321)
431 cd00280 TRFH Telomeric Repeat 43.3 1.6E+02 0.0034 26.4 7.7 29 540-569 118-146 (200)
432 KOG2034 Vacuolar sorting prote 43.1 5.5E+02 0.012 29.2 22.5 167 73-254 368-556 (911)
433 PRK10564 maltose regulon perip 42.4 41 0.00088 32.6 4.5 40 230-269 259-298 (303)
434 PF13934 ELYS: Nuclear pore co 42.4 2.9E+02 0.0064 25.8 12.2 115 411-534 90-205 (226)
435 KOG2297 Predicted translation 42.0 3.4E+02 0.0075 26.5 10.3 22 329-350 321-342 (412)
436 PF11848 DUF3368: Domain of un 41.2 95 0.0021 20.6 4.9 33 239-271 13-45 (48)
437 PHA03100 ankyrin repeat protei 41.0 4E+02 0.0087 28.2 12.7 237 73-324 42-306 (480)
438 smart00777 Mad3_BUB1_I Mad3/BU 40.4 1.9E+02 0.0041 24.1 7.6 41 552-592 82-124 (125)
439 PF09670 Cas_Cas02710: CRISPR- 40.4 3.3E+02 0.0071 28.0 11.1 52 474-527 140-195 (379)
440 PHA03100 ankyrin repeat protei 40.0 4.8E+02 0.01 27.6 15.7 242 103-363 37-310 (480)
441 COG2912 Uncharacterized conser 39.8 85 0.0018 30.0 6.1 57 540-596 188-244 (269)
442 PF11663 Toxin_YhaV: Toxin wit 39.8 39 0.00084 28.3 3.4 33 239-273 106-138 (140)
443 KOG1498 26S proteasome regulat 39.3 4.3E+02 0.0094 26.9 17.0 112 295-436 49-165 (439)
444 KOG1308 Hsp70-interacting prot 39.0 32 0.0007 33.8 3.3 111 477-590 126-238 (377)
445 KOG0686 COP9 signalosome, subu 38.8 4.5E+02 0.0098 26.9 13.3 91 401-493 152-257 (466)
446 KOG4814 Uncharacterized conser 38.5 2.6E+02 0.0056 30.4 9.8 84 512-595 365-456 (872)
447 TIGR02414 pepN_proteo aminopep 37.9 7.1E+02 0.015 29.0 14.3 58 532-589 772-836 (863)
448 PF15015 NYD-SP12_N: Spermatog 37.3 74 0.0016 32.3 5.5 43 590-642 310-352 (569)
449 COG5191 Uncharacterized conser 37.2 83 0.0018 30.6 5.6 78 497-574 103-183 (435)
450 KOG1550 Extracellular protein 36.8 5.9E+02 0.013 27.8 23.8 14 179-192 229-242 (552)
451 KOG0376 Serine-threonine phosp 36.7 71 0.0015 33.1 5.4 105 437-546 11-118 (476)
452 KOG3824 Huntingtin interacting 36.6 52 0.0011 31.8 4.2 55 475-532 126-182 (472)
453 PF15469 Sec5: Exocyst complex 36.0 3.2E+02 0.0069 24.4 11.3 24 470-493 91-114 (182)
454 COG5187 RPN7 26S proteasome re 35.7 3E+02 0.0064 26.7 8.8 17 279-295 171-187 (412)
455 COG2178 Predicted RNA-binding 35.7 3.4E+02 0.0073 24.6 8.7 19 577-595 131-149 (204)
456 KOG0991 Replication factor C, 35.6 3.8E+02 0.0083 25.2 11.7 47 419-466 228-274 (333)
457 COG2178 Predicted RNA-binding 35.5 2.5E+02 0.0053 25.5 7.8 51 409-459 39-98 (204)
458 PRK14015 pepN aminopeptidase N 35.1 7.9E+02 0.017 28.7 14.2 58 532-589 782-846 (875)
459 PF14689 SPOB_a: Sensor_kinase 34.4 62 0.0014 23.0 3.4 27 432-458 25-51 (62)
460 KOG0292 Vesicle coat complex C 33.8 40 0.00086 37.5 3.3 76 471-562 626-701 (1202)
461 PF10516 SHNi-TPR: SHNi-TPR; 33.7 97 0.0021 19.5 3.8 28 568-595 2-29 (38)
462 PF14669 Asp_Glu_race_2: Putat 33.4 3.7E+02 0.008 24.4 13.3 95 320-424 98-206 (233)
463 KOG0687 26S proteasome regulat 33.3 4.9E+02 0.011 25.8 11.7 21 202-222 109-129 (393)
464 KOG2422 Uncharacterized conser 32.4 6.7E+02 0.015 27.1 14.3 53 439-491 351-404 (665)
465 PRK13184 pknD serine/threonine 32.4 8.8E+02 0.019 28.4 20.6 143 448-595 674-832 (932)
466 PF10345 Cohesin_load: Cohesin 32.3 7.3E+02 0.016 27.5 32.4 49 477-525 373-428 (608)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 32.3 3E+02 0.0064 22.9 8.8 43 448-490 81-124 (126)
468 PHA02798 ankyrin-like protein; 32.2 5E+02 0.011 27.7 11.7 126 135-262 39-175 (489)
469 PF12968 DUF3856: Domain of Un 32.1 2.9E+02 0.0064 22.8 10.0 60 502-561 56-128 (144)
470 PHA02537 M terminase endonucle 31.6 4.4E+02 0.0096 24.7 9.9 21 545-565 190-210 (230)
471 PF11663 Toxin_YhaV: Toxin wit 31.5 50 0.0011 27.7 2.8 32 341-374 107-138 (140)
472 KOG0292 Vesicle coat complex C 30.5 8.8E+02 0.019 27.8 12.5 131 407-561 651-781 (1202)
473 PF02184 HAT: HAT (Half-A-TPR) 30.1 1.3E+02 0.0028 18.1 3.6 26 548-574 2-27 (32)
474 PF04090 RNA_pol_I_TF: RNA pol 30.1 4.3E+02 0.0094 24.1 9.7 63 429-492 40-103 (199)
475 KOG1114 Tripeptidyl peptidase 30.0 9.2E+02 0.02 27.9 13.9 45 472-516 1238-1282(1304)
476 PF04034 DUF367: Domain of unk 29.9 3.3E+02 0.0072 22.7 7.7 56 502-557 67-123 (127)
477 KOG2758 Translation initiation 29.7 5.6E+02 0.012 25.3 13.2 165 386-561 22-195 (432)
478 cd08332 CARD_CASP2 Caspase act 29.4 1.4E+02 0.0031 23.1 5.0 59 82-144 22-80 (90)
479 PF14669 Asp_Glu_race_2: Putat 29.3 4.4E+02 0.0095 23.9 13.6 22 332-353 184-205 (233)
480 PF05570 DUF765: Circovirus pr 29.3 34 0.00074 18.8 1.0 14 1-14 1-14 (29)
481 PF04190 DUF410: Protein of un 29.3 5.2E+02 0.011 24.8 16.3 110 209-329 2-121 (260)
482 cd08326 CARD_CASP9 Caspase act 29.3 1.9E+02 0.004 22.1 5.5 62 182-247 19-80 (84)
483 PF11768 DUF3312: Protein of u 29.2 2.5E+02 0.0054 30.0 8.0 57 201-257 412-473 (545)
484 PRK11639 zinc uptake transcrip 29.1 2E+02 0.0043 25.5 6.6 36 444-479 39-74 (169)
485 COG0735 Fur Fe2+/Zn2+ uptake r 29.0 2.6E+02 0.0055 24.1 7.0 47 434-480 24-70 (145)
486 KOG4334 Uncharacterized conser 28.8 26 0.00056 35.8 0.9 148 58-210 410-573 (650)
487 PF02847 MA3: MA3 domain; Int 28.7 1.6E+02 0.0034 23.7 5.6 22 304-325 8-29 (113)
488 COG5108 RPO41 Mitochondrial DN 28.6 2.6E+02 0.0057 30.5 8.0 88 202-292 33-132 (1117)
489 cd08326 CARD_CASP9 Caspase act 28.1 2.2E+02 0.0048 21.7 5.7 39 310-348 42-80 (84)
490 PRK11639 zinc uptake transcrip 27.8 2.7E+02 0.0058 24.7 7.1 45 233-277 30-74 (169)
491 COG0735 Fur Fe2+/Zn2+ uptake r 27.0 3.4E+02 0.0073 23.3 7.4 40 233-272 25-64 (145)
492 TIGR02710 CRISPR-associated pr 27.0 7E+02 0.015 25.6 11.4 27 439-465 139-165 (380)
493 PRK14700 recombination factor 26.9 5.7E+02 0.012 25.1 9.5 49 331-379 125-176 (300)
494 PF12069 DUF3549: Protein of u 26.8 6.6E+02 0.014 25.2 13.1 86 405-493 172-258 (340)
495 KOG2034 Vacuolar sorting prote 26.7 1E+03 0.022 27.3 29.2 170 170-355 366-556 (911)
496 COG0790 FOG: TPR repeat, SEL1 26.4 6E+02 0.013 24.6 18.3 183 413-600 55-270 (292)
497 PF11817 Foie-gras_1: Foie gra 25.6 1.9E+02 0.0041 27.6 6.2 19 438-456 186-204 (247)
498 KOG0686 COP9 signalosome, subu 25.6 7.5E+02 0.016 25.5 14.6 59 198-256 151-215 (466)
499 COG5191 Uncharacterized conser 25.1 1.9E+02 0.004 28.3 5.7 69 529-597 103-172 (435)
500 PF10255 Paf67: RNA polymerase 25.0 1.5E+02 0.0033 30.5 5.6 57 504-560 125-191 (404)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-107 Score=919.25 Aligned_cols=624 Identities=31% Similarity=0.590 Sum_probs=609.3
Q ss_pred CCchhhhhhHHhhc-----------cc-cc--ccCCChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044628 40 HDRSVLSSQLRNSG-----------TI-HE--STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVL 105 (665)
Q Consensus 40 ~~~~~~~~~~~~~~-----------~~-~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 105 (665)
.+...|++++.... +. |. |+.||.+||+.++++|+..+++..+.++|..+.+.|+.|++.++|+||
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 34456888887432 11 43 999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 044628 106 HVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRR 183 (665)
Q Consensus 106 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 183 (665)
.+|+++|++++|+++|++|+.||.++||+||.+|++.|+.. +++|.+|.+.|+.||..||+++|.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 044628 184 LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263 (665)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 263 (665)
+|..|.+.|+.||..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCC
Q 044628 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNG 343 (665)
Q Consensus 264 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 343 (665)
.||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g 469 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044628 344 DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFG 423 (665)
Q Consensus 344 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (665)
+.++|+.+|++|.. +++||..||+++|.+|++.|.++.+.++|..+.+.|+.++..++|+||++|+|+|++++|.++|+
T Consensus 470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999986 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhh
Q 044628 424 SVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503 (665)
Q Consensus 424 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 503 (665)
.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999977899999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 583 (665)
|++|+++|+|+|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh-ccCCc-ccc-cCccchhcc
Q 044628 584 FDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN-NVSGH-CNV-LDKEMDECT 660 (665)
Q Consensus 584 ~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~-~~~-~~~~~~~~~ 660 (665)
++|.++++.|+++|++|.||+||||+++++|.|++||.+||+.++||.+|+++..+|++. |+||+ .++ ++||+||..
T Consensus 708 ~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~ 787 (857)
T PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDI 787 (857)
T ss_pred HHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99999 888 888999999
Q ss_pred cCCCC
Q 044628 661 LWLPG 665 (665)
Q Consensus 661 ~~~hs 665 (665)
|++||
T Consensus 788 ~~~hs 792 (857)
T PLN03077 788 FCGHS 792 (857)
T ss_pred HHhcc
Confidence 99998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-93 Score=789.52 Aligned_cols=540 Identities=30% Similarity=0.539 Sum_probs=527.7
Q ss_pred CCCcccHHHHHHHHHhCCCCc--hHHHHHhhhCC-CCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHH
Q 044628 126 VRNIVTWNTLISGIINCGGNV--TPYFRRMLLDN-VRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA 202 (665)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~--~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 202 (665)
.++..+|+.+|.++++.|+.. +++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|++.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 456677888888888888776 78888887764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHH
Q 044628 203 LVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLG 282 (665)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 282 (665)
|+++|+++|++++|.++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCC
Q 044628 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362 (665)
Q Consensus 283 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 362 (665)
.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 044628 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAF 442 (665)
Q Consensus 363 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 442 (665)
|..||++++.+|++.|.++.|.++|..|.+.|+.++..++++||++|+|+|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 044628 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYD 522 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 522 (665)
+|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCC
Q 044628 523 LLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602 (665)
Q Consensus 523 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 602 (665)
++++|++.|+..+|++|+.+|..+|+++.|+.+++++++++|++...|..|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh-ccCCc-ccc--cCccchhcccCCCC
Q 044628 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN-NVSGH-CNV--LDKEMDECTLWLPG 665 (665)
Q Consensus 603 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~-~~~--~~~~~~~~~~~~hs 665 (665)
|+|||++++.+|.|++||..||+..+||.+++++..+|++. |+||+ +++ +++++||..|++||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hs 630 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHS 630 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999 99999 888 99999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-83 Score=725.13 Aligned_cols=534 Identities=29% Similarity=0.475 Sum_probs=496.6
Q ss_pred ccCCChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHH
Q 044628 58 STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137 (665)
Q Consensus 58 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 137 (665)
|+.|+..+|..++++|.+.+.+..|.++|+.+.+.|..+++.++|+||.+|+++|+++.|+++|++|++||+++||++|.
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHH
Q 044628 138 GIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215 (665)
Q Consensus 138 ~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 215 (665)
+|++.|+.+ +++|++|...|+.||.+||+++|++|+..++++.+.++|..+++.|+.||..++|+||++|+++|++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 044628 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295 (665)
Q Consensus 216 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 295 (665)
|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 375 (665)
||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 044628 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455 (665)
Q Consensus 376 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 455 (665)
+.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC------------------------------CChhhHH
Q 044628 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL------------------------------PDSEHYT 505 (665)
Q Consensus 456 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------------------------------p~~~~~~ 505 (665)
|.. ++.||..||+.++.+|++.|.++.+.+++..+.+ .|+. ||..+|+
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n 558 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN 558 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH
Confidence 986 5999999999999999999998888888888876 4664 4555666
Q ss_pred HHHHHHHhcCChHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHh
Q 044628 506 CLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE---LEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~y~~ 579 (665)
+|+.+|++.|+.++|+++|++| ++.||..||++++.+|.+.|++++|.++|+.+.+ +.|+ ..+|..++++|.+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r 637 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHh
Confidence 6666666667777777777776 5677777777777777777777777777777763 3343 5677777777777
Q ss_pred cCCHHHHHHHHHHHh
Q 044628 580 ERCWFDVARLRKMMR 594 (665)
Q Consensus 580 ~g~~~~A~~~~~~m~ 594 (665)
+|++++|.+++++|.
T Consensus 638 ~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 638 AGKLTEAYNFINKMP 652 (857)
T ss_pred CCCHHHHHHHHHHCC
Confidence 777777777777773
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-70 Score=602.93 Aligned_cols=439 Identities=28% Similarity=0.479 Sum_probs=427.5
Q ss_pred ccCCChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHH
Q 044628 58 STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137 (665)
Q Consensus 58 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 137 (665)
++.||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.++|.|+.+|+++|++++|+++|++|++||.++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHH
Q 044628 138 GIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVED 215 (665)
Q Consensus 138 ~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 215 (665)
+|++.|+.+ +++|++|.+.|+.||..||+.++.+|++.|+.+.+.++|..+.+.|+.+|..+||+||++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 044628 216 ARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD 295 (665)
Q Consensus 216 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 295 (665)
|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+.
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG 375 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 375 (665)
+|..++++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHH
Q 044628 376 SLSISCETRQVHAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVF 453 (665)
Q Consensus 376 ~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 453 (665)
+.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|. +|+..+|++|+.+|..+|+.+.|..++
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999976 6999999999999999999999999999999997 699999999999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 044628 454 EKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499 (665)
Q Consensus 454 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 499 (665)
+++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+..
T Consensus 518 ~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 518 EKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 99975 4665 56999999999999999999999999988 57653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-69 Score=596.09 Aligned_cols=500 Identities=18% Similarity=0.235 Sum_probs=435.8
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccH-----HHHHHHHHhCCCCc--hHHHHHhhhCCCCCCcchHHH
Q 044628 95 CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTW-----NTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNS 167 (665)
Q Consensus 95 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ 167 (665)
.++...|..++..++++|++++|+++|++|+.++...| +.++.+|.+.|... +.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35566777777777778888888888888876655443 44555677777655 677777764 88888888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC----CCCchhHHHHHHHHHhcCC
Q 044628 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL----CRDLVLWNVMVSCYALNCL 243 (665)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 243 (665)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888999999999999999999999999999999999999999999999999999996 5788999999999999999
Q ss_pred chHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIK--QSFDLDVLVATSLVDMYAKNGNIDDACRVF 321 (665)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 321 (665)
+++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred hccCC----CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCC
Q 044628 322 DGMTA----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397 (665)
Q Consensus 322 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 397 (665)
+.|.+ ++..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99975 56689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVK----EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 473 (665)
+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999985 58999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hcC-------------------ChHHHHHHHHhC---
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG----RVG-------------------LLVEAYDLLASM--- 527 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~--- 527 (665)
+|++.|++++|.++|+.|.+ .|+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999988 699999999999987643 222 346899999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCccCC
Q 044628 528 PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL-ELEPSKPVNYALVSNVYASERCW-FDVARLRKMMRDNCDHKVP 602 (665)
Q Consensus 528 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~~~~~~~~ 602 (665)
++.||..+|..++.++...+..+.+...++.+. .-.+.+..+|..|++.+ |++ ++|..+++.|...|+.+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 899999999999977778888888888887654 23344577899999877 433 6899999999999986553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-67 Score=584.43 Aligned_cols=503 Identities=17% Similarity=0.207 Sum_probs=475.0
Q ss_pred ccCCChHHHHHHHHHhhccCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHH
Q 044628 58 STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGL-CNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLI 136 (665)
Q Consensus 58 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 136 (665)
+-.++...|..++..|.+.|++..|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555677899999999999999999999999999985 577888899999999999999999999999999999999999
Q ss_pred HHHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChH
Q 044628 137 SGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE 214 (665)
Q Consensus 137 ~~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 214 (665)
.+|++.|+.+ .++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||++|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999988 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC----CCCchhHHHHHHHHHhcCCchHHHHHHHHHHH--CCCCCCHhhHHHHHHHHhccCCcHHHHHHHHH
Q 044628 215 DARRVFDEVL----CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL--EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288 (665)
Q Consensus 215 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 288 (665)
+|.++|++|. .||.++||+||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999994 57999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH
Q 044628 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364 (665)
Q Consensus 289 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 364 (665)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999974 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHH
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK----EPDLVTWTSIIGAY 440 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~ 440 (665)
.+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 49999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-----------------------CCcHHHHHHHHHHHHHhcCC
Q 044628 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH-----------------------GGLVSEGLRYFNLMISDYHI 497 (665)
Q Consensus 441 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-----------------------~g~~~~a~~~~~~~~~~~~~ 497 (665)
++.|+.++|.++|++|.+.|+.||..+|+.++..|.+ .+..++|..+|++|.+ .|+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi 843 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGT 843 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCC
Confidence 9999999999999999999999999999999876542 1234689999999998 699
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 498 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
.||..+|+.++.++.+.+..+.+..+++.| +..|+..+|++|+.+|... .++|..+++.+.+.+
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998 5667789999999998432 468999999998754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.7e-31 Score=305.04 Aligned_cols=522 Identities=10% Similarity=0.022 Sum_probs=251.4
Q ss_pred ChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHH
Q 044628 62 AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISG 138 (665)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 138 (665)
+...+..+...+...|+++.|.+.+..+.+.. +.+...++.+...|.+.|++++|.+.|+++.. .+...|..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34445555556666677777777666666543 34455666666666677777777777665532 233445555555
Q ss_pred HHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHH
Q 044628 139 IINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216 (665)
Q Consensus 139 ~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 216 (665)
+...|+.. ++.|.+..+.... +......++..+.+.|++++|..+++.+.+.. +.+..++..+...|...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHH
Confidence 55555554 5555554433211 11223333444445555555555555544431 23344445555555555555555
Q ss_pred HHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 044628 217 RRVFDEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293 (665)
Q Consensus 217 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 293 (665)
.+.|+++.. .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555544321 123344444444455555555555555544432 1233344444444444444444544444444432
Q ss_pred ---------------------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHH
Q 044628 294 ---------------------------------FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVV 337 (665)
Q Consensus 294 ---------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 337 (665)
.+.+..++..+..+|.+.|++++|...|+.+.+ .+...|..+..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 133344444444444444555555444444422 23334444444
Q ss_pred HHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044628 338 GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417 (665)
Q Consensus 338 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 417 (665)
.|.+.|++++|+..|+++.... +.+..++..+...+...|+++.|..++..+.+.+ +.+...+..+...|.+.|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 4444555555555554444321 1223344444444444455555555554444433 2233344444445555555555
Q ss_pred HHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 044628 418 ALQCFGSVK--EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY 495 (665)
Q Consensus 418 A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 495 (665)
|.+.|+++. .|+..++..++..+...|+.++|.+.++++.+.. +.+...+..+...|...|++++|.++|+.+.+
T Consensus 722 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-- 798 (899)
T TIGR02917 722 AIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK-- 798 (899)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--
Confidence 555555443 1333444444455555555555555555554431 22333444444455555555555555555544
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 496 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
..+++...+..+..++.+.|+ .+|++.++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..+
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 122344445555555555555 4455555544 2223 233444444455555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 044628 574 SNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 574 ~~~y~~~g~~~~A~~~~~~m 593 (665)
+.+|.+.|++++|.+++++|
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.8e-30 Score=298.21 Aligned_cols=522 Identities=12% Similarity=0.023 Sum_probs=373.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHHHHhC
Q 044628 66 YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGIINC 142 (665)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 142 (665)
+..+-..+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 3344455678899999999999998865 45667788899999999999999999988753 4566788999999999
Q ss_pred CCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 044628 143 GGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVF 220 (665)
Q Consensus 143 ~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 220 (665)
|+.. ..+|+++.+.. +.+...+..+...+...|+.++|...+..+.+.... .......++..|.+.|++++|.+++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 9988 88898887653 224556777778888999999999999999987532 3456677888999999999999999
Q ss_pred hccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc
Q 044628 221 DEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297 (665)
Q Consensus 221 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 297 (665)
+.+.. .+...|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 98853 367789999999999999999999999998753 2345667778888999999999999999999875 567
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 044628 298 VLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374 (665)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 374 (665)
..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+...+..+...+
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 78888899999999999999999988743 344566677777777788888888777776542 34556677777777
Q ss_pred CCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 044628 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 375 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.+
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777776554 33445566667777777777777777766542 334455555555555555555555
Q ss_pred HHHHHHHcC--------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 044628 452 VFEKMLSHA--------------------------------VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499 (665)
Q Consensus 452 ~~~~m~~~g--------------------------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 499 (665)
+++.+.+.+ ..|+..++..+..++.+.|++++|.+.++.+.+ ..+.
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~ 768 (899)
T TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPN 768 (899)
T ss_pred HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 555554432 123333444444445555555555555555544 2233
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
+...+..+...|.+.|+.++|.+.|+++ ...| +..++..+...+...|+ .+|+..+++++++.|+++..+..++.+|
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4555566666666666666666666665 2223 45556666666666666 5566666666666666666666777777
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 044628 578 ASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m~~~~ 597 (665)
...|++++|.+.++++.+.+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC
Confidence 77777777777777776554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5.4e-21 Score=222.58 Aligned_cols=411 Identities=12% Similarity=0.025 Sum_probs=311.2
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC--CCc---hhHHHH-----------
Q 044628 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDL---VLWNVM----------- 234 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----------- 234 (665)
.+...|++++|...++..++.. +.+..++..|...|.+.|+.++|+..|++... |+. ..|..+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4556788888888888888764 33677788888888888888888888887643 211 123222
Q ss_pred -HHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044628 235 -VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313 (665)
Q Consensus 235 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 313 (665)
...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 335667888888888888887753 2245566667777888888888888888888764 445566667777764 457
Q ss_pred HHHHHHHHhccCCCC------------chhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHhCCCCch
Q 044628 314 IDDACRVFDGMTAKN------------VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD-EVTLASILSSCGSLSIS 380 (665)
Q Consensus 314 ~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~ 380 (665)
.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|+.
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 788888887765321 123455667788899999999999999875 354 44566777788999999
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----Ch---------hHHHHHHHHHHhcCChH
Q 044628 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP----DL---------VTWTSIIGAYAFHGLSK 447 (665)
Q Consensus 381 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~ 447 (665)
++|...++.+.+... .+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 999999999887542 34444445555677889999999999988631 11 11234566788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
+|.++++. ..++...+..+...+.+.|+.++|++.|+.+.+. -+.+...+..++.+|...|++++|++.++..
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999872 2345556777888899999999999999999872 3346788999999999999999999999988
Q ss_pred -CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 528 -PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV------NYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 528 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
...|+ ...+..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++++|...+++...
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45554 556777778888999999999999999998776543 556679999999999999999988753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=4.9e-21 Score=222.94 Aligned_cols=526 Identities=11% Similarity=0.000 Sum_probs=308.7
Q ss_pred ChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHH----------------HHHHHHhhcCCChHHHHHHHcccC
Q 044628 62 AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQ----------------NQVLHVYVKCKAFDDMEKLFDEMR 125 (665)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----------------~~li~~~~~~g~~~~A~~~f~~~~ 125 (665)
++..+..+...+.+.|+.+.|.+.++.+.+.. +.+.... ..+...+.+.|++++|.+.|+...
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 44556666666677777777777777777655 1222211 223335666777777777777665
Q ss_pred CCCcccHH--H-HHHHH-HhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC----
Q 044628 126 VRNIVTWN--T-LISGI-INCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGL---- 195 (665)
Q Consensus 126 ~~~~~~~~--~-li~~~-~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---- 195 (665)
..+..... . ..... ...|+.. ++.|+++.+.. +-+......+...+...|+.++|.+.++++.+.....
T Consensus 140 ~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 140 NGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred cCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 32211111 1 11111 1123333 66666665542 1233445555566666777777777777765432100
Q ss_pred ------------c---hHHHHHHHHHHHhCCChHHHHHHHhccCCC--Cch-hHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 044628 196 ------------N---CFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLV-LWNVMVSCYALNCLGDGAIAVFNLMRLE 257 (665)
Q Consensus 196 ------------~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (665)
+ ...+...+..+-....++.|...+.+.... |.. ........+...|++++|+..|++..+.
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0 001111111122222233444444332111 111 1123345667788888888888888775
Q ss_pred CCCC-CHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC-chhHH------------HHHHHHHHhcCCHHHHHHHHhc
Q 044628 258 GMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL-DVLVA------------TSLVDMYAKNGNIDDACRVFDG 323 (665)
Q Consensus 258 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~ 323 (665)
.| +...+..+...+.+.|+.++|...++.+++..-.. ....+ ..+...+.+.|++++|...|++
T Consensus 299 --~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 299 --NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34 56677777888888888888888888888764221 11111 1234566788888888888888
Q ss_pred cCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCC---
Q 044628 324 MTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD-EVTLASILSSCGSLSISCETRQVHAYAIKNGVQ--- 396 (665)
Q Consensus 324 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--- 396 (665)
..+ .+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+. .++.++|..+++.+......
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 764 345567778888888888888888888887643 33 334444444443 45677887777654322100
Q ss_pred -----CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 044628 397 -----AFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIA 467 (665)
Q Consensus 397 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 467 (665)
.....+..+...+...|++++|.+.|++..+ .+...+..+...|.+.|++++|...++++.+. .|+ ...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 0122345567778889999999999998763 35567778888899999999999999998874 453 334
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhc--------------------------------------CCCCChhhHHHHHH
Q 044628 468 FLEVLSACSHGGLVSEGLRYFNLMISDY--------------------------------------HILPDSEHYTCLTD 509 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------------------------------------~~~p~~~~~~~l~~ 509 (665)
+..+...+...|+.++|+..++.+.... ..+++...+..+.+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 4444455677899999999988753210 01122333444555
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 587 (665)
.+.+.|++++|++.|++. ...| +...+..+...+...|+.++|++.++++++..|+++..+..++.++.+.|++++|.
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 555555555555555555 3333 24455555555555566666666666555555555555555566666666666666
Q ss_pred HHHHHHhhC
Q 044628 588 RLRKMMRDN 596 (665)
Q Consensus 588 ~~~~~m~~~ 596 (665)
++++++...
T Consensus 692 ~~~~~al~~ 700 (1157)
T PRK11447 692 RTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhhh
Confidence 666555543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.5e-18 Score=193.14 Aligned_cols=517 Identities=9% Similarity=-0.033 Sum_probs=339.0
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccC--CCCc-ccHHHHHHH-
Q 044628 63 HSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--VRNI-VTWNTLISG- 138 (665)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~-~~~~~li~~- 138 (665)
..++..+.+.+...|+++.|....+...+.. |+-..+..++..+ ++.++|..+++++. .|+- ..+..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHh
Confidence 3445555566666666666666666665543 3222222222222 55566666666654 2221 222222222
Q ss_pred -------HHhCCCCchHHHHHhhhCCCCCCcchHHHH-HHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-
Q 044628 139 -------IINCGGNVTPYFRRMLLDNVRLDHITFNSL-LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGK- 209 (665)
Q Consensus 139 -------~~~~~~~~~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 209 (665)
|.+.+.. .+.++ .......|+..+.... .+.|...+++++|..++..+.+.+.. +......|-.+|..
T Consensus 153 ~~~~~l~y~q~eqA-l~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 153 VGQNALRLAQLPVA-RAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAG 229 (987)
T ss_pred hccchhhhhhHHHH-HHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 3333211 33333 2222333445545555 88899999999999999999998743 45557777778888
Q ss_pred CCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CCHhhHHHH-------------------
Q 044628 210 CGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK-GDYFTFSSL------------------- 269 (665)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l------------------- 269 (665)
.++ +++..+++...+.|...+..+...|.+.|+.++|.++++++...-.. |+..++..+
T Consensus 230 l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 230 QLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred hCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 477 88888887765668889999999999999999999999998654222 333333322
Q ss_pred -----------HHHHhccCCcHHHHHHHH-----------------------------HHHHhCCCCchhHHHHHHHHHH
Q 044628 270 -----------VNSCGTLGSSKLGRQIHG-----------------------------LVIKQSFDLDVLVATSLVDMYA 309 (665)
Q Consensus 270 -----------l~~~~~~~~~~~a~~~~~-----------------------------~~~~~g~~~~~~~~~~li~~~~ 309 (665)
+..+.+.++++.++++.. .+.+. .+.+.....-+.-...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence 222333333333333321 11111 0112233333333445
Q ss_pred hcCCHHHHHHHHhccCC--C----CchhHHHHHHHHHcCCC---hHHHHHH------------H----------HHHhh-
Q 044628 310 KNGNIDDACRVFDGMTA--K----NVVSWNTMVVGFGQNGD---GREAVKL------------L----------RDMLQ- 357 (665)
Q Consensus 310 ~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~------------~----------~~m~~- 357 (665)
+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..+++.+ . .....
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 67888888888887754 1 12234456677777665 3333333 1 11111
Q ss_pred CCCCC---CHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhH
Q 044628 358 GSFCP---DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE--PDLVT 432 (665)
Q Consensus 358 ~g~~p---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~ 432 (665)
.+..| +...+..+-.++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a 544 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNED 544 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH
Confidence 11223 33444444444444 78888888777666554 4433333445555789999999999997763 55566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 044628 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511 (665)
Q Consensus 433 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 511 (665)
+..+...+.+.|+.++|...+++.++.. |+.. .+..+...+...|++++|...+++..+ +.|+...|..+..++
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l 619 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIY 619 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 7777888899999999999999998863 5443 344444556677999999999999987 567888999999999
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHH
Q 044628 512 GRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589 (665)
Q Consensus 512 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 589 (665)
.+.|++++|++.+++. ...|+ ...+..+..++...|+.++|+..++++++++|+++.++..++.+|...|++++|+..
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998 66775 556777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 044628 590 RKMMRDNC 597 (665)
Q Consensus 590 ~~~m~~~~ 597 (665)
+++..+..
T Consensus 700 l~~Al~l~ 707 (987)
T PRK09782 700 ARLVIDDI 707 (987)
T ss_pred HHHHHhcC
Confidence 99987654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3e-20 Score=183.27 Aligned_cols=379 Identities=15% Similarity=0.150 Sum_probs=317.5
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHH-HH
Q 044628 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL-VN 271 (665)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~ 271 (665)
-..+|+.+.+.+-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+- -.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 4567888888899999999999999887543 567899999999999999999999988876 45765544332 33
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---hhHHHHHHHHHcCCChHHH
Q 044628 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV---VSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 348 (665)
.....|++++|..-+.++++.. +.=..+|+.|...+-..|+...|+.-|++..+-|+ ..|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 3445788999999888888764 33456788888889999999999999998876333 5788888999999999999
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 044628 349 VKLLRDMLQGSFCPDE-VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE 427 (665)
Q Consensus 349 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 427 (665)
+..+.+... ..|+. +.+..+...|...|.+|.|...++..++.. +.-...|+.|..++-..|++.+|.+.+++...
T Consensus 272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 999988766 35664 456666667889999999999999888754 23356789999999999999999999998763
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hh
Q 044628 428 ---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SE 502 (665)
Q Consensus 428 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 502 (665)
....+.+.|...|...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|+..|++..+ |.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHH
Confidence 4567889999999999999999999999987 57776 4799999999999999999999999986 7887 67
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 580 (665)
.|+.|...|-..|+.++|++.+.++ .+.|. ....+.|.+.+...|++.+|+..++.++++.|+.+.+|..+..++---
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8999999999999999999999998 77886 678899999999999999999999999999999999999888877666
Q ss_pred CCHHH
Q 044628 581 RCWFD 585 (665)
Q Consensus 581 g~~~~ 585 (665)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 66666
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-20 Score=184.54 Aligned_cols=419 Identities=13% Similarity=0.139 Sum_probs=336.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCc
Q 044628 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLG 244 (665)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 244 (665)
+..-.-+.|++++|++.-..+-+.. +.+....-.+-..|.+..+.+....--...... -..+|..+...+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344556788888887655544432 112222222335566666666554433333222 345899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHh
Q 044628 245 DGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL-VATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 245 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 322 (665)
++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.+.+.++. .|+.. +.+.+.......|++.+|...|.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 55 4678999999999999999999999999886 45544 34445556667899999999988
Q ss_pred ccCC--C-CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCc
Q 044628 323 GMTA--K-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE-VTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398 (665)
Q Consensus 323 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 398 (665)
+..+ | =.+.|+.|...+-.+|+...|+..|++..+ +.|+- ..|..+-..+...+.++.|...+....... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7765 3 346899999999999999999999999987 45653 456667777777788888887777665533 233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKE--PD-LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSA 474 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 474 (665)
..++..|...|...|.++-|...+++..+ |+ ...|+.|..++-..|+..+|...|.+.+.. .|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 55666777889999999999999999874 43 468999999999999999999999999984 6766 578899999
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 551 (665)
+...|.+++|..+|..... +.|. ....+.|...|-.+|++++|+..+++. .++|. ...++.+...+...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999999986 4565 667899999999999999999999998 88997 6689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
|.+.+.+++..+|.-+.++..|+.+|..+|+..+|+.-++...+....
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999988765543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.1e-17 Score=186.30 Aligned_cols=507 Identities=13% Similarity=0.029 Sum_probs=355.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CCcccHHHHHHHHHhCCCCc--hHHH
Q 044628 75 KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV--RNIVTWNTLISGIINCGGNV--TPYF 150 (665)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~--~~~~ 150 (665)
..|+++.|...++..++.. +-+..++..|...|.+.|+.++|+..+++... |+-..|..++..+ ++.. ..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3499999999999999876 34588899999999999999999999998764 3333444444333 4333 8999
Q ss_pred HHhhhCCCCCCc-chHHHHHHHH-----hcCCChHHHHHHHHHHHHhCCCCchHHHHHH-HHHHHhCCChHHHHHHHhcc
Q 044628 151 RRMLLDNVRLDH-ITFNSLLRAC-----VQADDIEVGRRLHSFILKVGFGLNCFVSSAL-VDLYGKCGFVEDARRVFDEV 223 (665)
Q Consensus 151 ~~m~~~g~~p~~-~t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~ 223 (665)
+++.... |+. ..+..+.... .+..+.++|.+.++ .......|+..+.... ...|.+.|++++|++++.++
T Consensus 132 e~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9998753 443 3333333330 22334477777776 4444444455555555 89999999999999999998
Q ss_pred CCC---CchhHHHHHHHHHh-cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-Cch
Q 044628 224 LCR---DLVLWNVMVSCYAL-NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD-LDV 298 (665)
Q Consensus 224 ~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~ 298 (665)
.+. +...+..|-..|.+ .++ +++..+++. .++-|......+...+.+.|+.++|.+++..+...-.. |+.
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 654 33446667778888 377 788887553 33457788889999999999999999988876543111 111
Q ss_pred h------------------------------HHHHHHHHHHhcCCHHHHHHHHhccCCC---------------------
Q 044628 299 L------------------------------VATSLVDMYAKNGNIDDACRVFDGMTAK--------------------- 327 (665)
Q Consensus 299 ~------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------- 327 (665)
. ..-.+++.+.+.++++.+.++.+.-+..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 1 1223367778888888777774422210
Q ss_pred -----------CchhHHHHHHHHHcCCChHHHHHHHHHHhhC-C-CCCCHHHHHHHHHHhCCCCchH---hHHHH-----
Q 044628 328 -----------NVVSWNTMVVGFGQNGDGREAVKLLRDMLQG-S-FCPDEVTLASILSSCGSLSISC---ETRQV----- 386 (665)
Q Consensus 328 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~---~a~~i----- 386 (665)
+......+---..+.|+.++|..+|+..... + ..++......++..+.+.+.+. .+..+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 1111112222345788999999999988662 1 2344444546677766665522 22111
Q ss_pred -----------------HHHHHHh-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhc
Q 044628 387 -----------------HAYAIKN-GV-QA--FLSIENALINAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFH 443 (665)
Q Consensus 387 -----------------~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 443 (665)
....... +. ++ +...+..+..++.. |+.++|...|.+... |+......+...+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 1112111 12 23 56677788888877 899999998877653 5433322334444689
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 044628 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 444 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 523 (665)
|++++|...|+++... .|+...+..+..++.+.|+.++|.++++...+. -+++...+..+...+.+.|++++|+..
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998664 555556667778889999999999999999872 223333444444455567999999999
Q ss_pred HHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 524 LASM-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 524 ~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
+++. ...|+...|..+..++.+.|+.++|+..++++++++|+++.++..++.++...|++++|+..+++..+..+
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9998 67788889999999999999999999999999999999999999999999999999999999998876543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=5.1e-18 Score=185.74 Aligned_cols=418 Identities=11% Similarity=-0.008 Sum_probs=295.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhc
Q 044628 165 FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALN 241 (665)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 241 (665)
+...-..+.+.|++++|...|...++. .|+...|..+..+|.+.|++++|++.++..... +...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334456677889999999999999874 577888999999999999999999999887432 556888899999999
Q ss_pred CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 242 CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321 (665)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 321 (665)
|++++|+.-|......+- .+......++..+.. ..+........+.. +.+...+..+.. |........+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999998877654421 111111122211111 12222222232222 222222322222 22221111111112
Q ss_pred hccCCCCc---hhHHHHHHH---HHcCCChHHHHHHHHHHhhCC-CCCCH-HHHHHHHHHhCCCCchHhHHHHHHHHHHh
Q 044628 322 DGMTAKNV---VSWNTMVVG---FGQNGDGREAVKLLRDMLQGS-FCPDE-VTLASILSSCGSLSISCETRQVHAYAIKN 393 (665)
Q Consensus 322 ~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 393 (665)
+...+-+. ..+..+... ....+++++|++.|++....+ ..|+. ..+..+-..+...|+++.|...+...++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 21111111 111111111 123478999999999998764 33443 45555666677899999999999998876
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 044628 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFL 469 (665)
Q Consensus 394 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 469 (665)
. +.....+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++. .|+ ...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 4 23355777888899999999999999998753 56788999999999999999999999999985 554 45677
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-hH-------HHHHH
Q 044628 470 EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRS-DT-------LGAFI 540 (665)
Q Consensus 470 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~ll 540 (665)
.+..++.+.|++++|+..|+...+ ..+.+...|..+..++...|++++|++.|++. .+.|+. .. ++..+
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 788889999999999999999987 23445788999999999999999999999997 444431 11 11122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..+...|++++|+..++++++++|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23344699999999999999999999889999999999999999999999988654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.3e-19 Score=183.69 Aligned_cols=292 Identities=16% Similarity=0.087 Sum_probs=193.4
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCC-------chhHHHHHHHHHhcCC
Q 044628 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD-------LVLWNVMVSCYALNCL 243 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~ 243 (665)
.+...|++++|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456677888888888888764 2345677778888888888888888887764421 1356777788888888
Q ss_pred chHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHH
Q 044628 244 GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD----VLVATSLVDMYAKNGNIDDACR 319 (665)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~ 319 (665)
+++|..+|+++.+.. ..+..++..+...+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887642 24566777777888888888888888888777653221 1234566677778888888888
Q ss_pred HHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCC
Q 044628 320 VFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ 396 (665)
Q Consensus 320 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 396 (665)
.|+++.+ .+...+..+...|.+.|++++|+++|+++...+......++..+..++...|++++|...+..+.+..
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 8877653 23456677777888888888888888887764322223445556666666666666666666665543
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 044628 397 AFLSIENALINAYSKCGSIAGALQCFGSVK--EPDLVTWTSIIGAYAF---HGLSKESIEVFEKMLSHAVRPDSI 466 (665)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 466 (665)
|+...+..++..+.+.|++++|..+|+++. .|+...++.++..+.. +|+.++++.++++|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 333344566666666666666666666554 2566666666655543 346666666666666655555554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=6.8e-19 Score=182.86 Aligned_cols=288 Identities=13% Similarity=0.109 Sum_probs=196.1
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------chhHHHHHHHHHcCCCh
Q 044628 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN-------VVSWNTMVVGFGQNGDG 345 (665)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~ 345 (665)
+...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455666666666665543 3344455555555555666666655555544311 12345555555555555
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044628 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425 (665)
Q Consensus 346 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 425 (665)
++|+.+|+++.+.. +.+..+++.++..|.+.|++++|.+.|+.+
T Consensus 124 ~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 124 DRAEELFLQLVDEG------------------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHcCC------------------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 55555555554431 223344455666666666666666666665
Q ss_pred CC--CC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 044628 426 KE--PD------LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496 (665)
Q Consensus 426 ~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 496 (665)
.+ ++ ...|..+...+...|+.++|.+.|+++.+. .|+ ...+..+...+.+.|++++|.++|+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 42 11 123556777788889999999999988875 344 456777778888899999999999988762
Q ss_pred CCCC--hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 497 ILPD--SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 497 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
.|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|...++++++..|++. .+..+
T Consensus 244 -~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l 321 (389)
T PRK11788 244 -DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRL 321 (389)
T ss_pred -ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHH
Confidence 343 456788889999999999999999988 5667777777888889999999999999999999999865 44444
Q ss_pred HHHHHh---cCCHHHHHHHHHHHhhCCCccCCc
Q 044628 574 SNVYAS---ERCWFDVARLRKMMRDNCDHKVPG 603 (665)
Q Consensus 574 ~~~y~~---~g~~~~A~~~~~~m~~~~~~~~~~ 603 (665)
...+.. .|+.+++..++++|.+++++..|.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 444442 568999999999999888888876
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.6e-16 Score=175.43 Aligned_cols=400 Identities=10% Similarity=-0.024 Sum_probs=233.2
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhcc---CCCCchhHHHHHHH
Q 044628 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV---LCRDLVLWNVMVSC 237 (665)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~ 237 (665)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++. ...+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33344455566677788888888887777632 344556777777888888888888888774 23345567777777
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044628 238 YALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317 (665)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 317 (665)
+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++.+++.. +.+...+..+..++.+.|..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 88888888888888887765 3332226666666777788888888888877764 44555566677777777777777
Q ss_pred HHHHhccCCCCch--------hHHHHHHHHH-----cCCCh---HHHHHHHHHHhhC-CCCCCHH-HHHHHHHHhCCCCc
Q 044628 318 CRVFDGMTAKNVV--------SWNTMVVGFG-----QNGDG---REAVKLLRDMLQG-SFCPDEV-TLASILSSCGSLSI 379 (665)
Q Consensus 318 ~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~ 379 (665)
.+.++.... ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~---------- 238 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR---------- 238 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH----------
Confidence 777776654 211 1111111111 11122 4455555555432 1122211 0000
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHH
Q 044628 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD---LV-TWTSIIGAYAFHGLSKESIEVFEK 455 (665)
Q Consensus 380 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~ 455 (665)
.....+.++...|+.++|...|+++.+.+ +. .-..+...|...|++++|+..|++
T Consensus 239 ---------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 239 ---------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred ---------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 00000112234456666666666655311 11 111134456666666666666666
Q ss_pred HHHcCCCC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC----------CCCC---hhhHHHHHHHHHhcCChHH
Q 044628 456 MLSHAVRP---DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH----------ILPD---SEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 456 m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 519 (665)
+.+..... .......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 55432110 012344444455666666666666666654210 1123 2244556666777777777
Q ss_pred HHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 520 AYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 520 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
|++.++++ ...| +...+..+...+...|+.++|++.++++++++|+++..+..++..+.+.|+|++|..+++.+.+.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777776 3344 35566666677777777777777777777777777777777777777777777777777766543
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.1e-17 Score=177.88 Aligned_cols=351 Identities=13% Similarity=-0.009 Sum_probs=269.0
Q ss_pred HhCCChHHHHHHHhccCCC------CchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHH
Q 044628 208 GKCGFVEDARRVFDEVLCR------DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL 281 (665)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 281 (665)
.+..+++.-.-+|...+++ +..-...++..+.+.|++++|+.+++........+ ...+..++.++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 3455666655566555432 22334556778888899999999998888764333 3344445566667899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhC
Q 044628 282 GRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQG 358 (665)
Q Consensus 282 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 358 (665)
|...++.+++.. +.+...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 55677788888899999999999999988764 35567888889999999999999999888765
Q ss_pred CCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHH
Q 044628 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTS 435 (665)
Q Consensus 359 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 435 (665)
...+.. .+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 322222 2222 334677899999999988887765434444555667788899999999999998763 46678888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHH
Q 044628 436 IIGAYAFHGLSKE----SIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTD 509 (665)
Q Consensus 436 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 509 (665)
+...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|+..++.... ..| +...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 9999999999986 89999999985 5654 5788888999999999999999999987 344 4566778889
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCChhHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEPRSDTLG-AFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
+|.+.|++++|++.++++ ...|+...+. .+..++...|+.++|+..++++++..|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999988 5567654443 345678899999999999999999999864
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.3e-16 Score=177.72 Aligned_cols=374 Identities=12% Similarity=0.018 Sum_probs=267.2
Q ss_pred CCchHHHHHHHHHHHhCCChHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHhhHHHH
Q 044628 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSL 269 (665)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 269 (665)
..+.....-.+......|+.++|++++.+... .+...+..+...+...|++++|.++|++.... .| +......+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33555555666778888999999999988754 23445889999999999999999999998775 34 35556677
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHcCCChH
Q 044628 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--K-NVVSWNTMVVGFGQNGDGR 346 (665)
Q Consensus 270 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 346 (665)
...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 777889999999999999998874 55566 88888899999999999999988865 3 4456677788888889999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHh
Q 044628 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI---AGALQCFG 423 (665)
Q Consensus 347 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~ 423 (665)
+|+..++.... .|+.... +. ...+ ....+. .+.......+++ ++|.+.++
T Consensus 168 ~Al~~l~~~~~---~p~~~~~---l~-------~~~~----~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRD---LE-------ADAA----AELVRL----------SFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHHHHHH---HH-------HHHH----HHHHHh----------hcccccChhHHHHHHHHHHHHHH
Confidence 99998876654 3441100 00 0000 000000 001111122223 55666666
Q ss_pred cCCC-----CChh-HH----HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 424 SVKE-----PDLV-TW----TSIIGAYAFHGLSKESIEVFEKMLSHAVR-PDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 424 ~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
.+.+ |+.. .+ ...+..+...|++++|+..|+++.+.+.. |+.. -..+..++...|++++|+++|+.+.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 5541 2211 11 11134556779999999999999987532 4332 2224678999999999999999987
Q ss_pred HhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------C---hhHHHHHHHHHHhcCCHHHHH
Q 044628 493 SDYHILP--DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-------------R---SDTLGAFIGACKVHGSIGLAK 553 (665)
Q Consensus 493 ~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~ 553 (665)
+.....+ ....+..+..++...|++++|.+.++++ ...| + ...+..+...+...|+.++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 6311111 1345777788899999999999999988 3333 2 123445667788999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
..++++++..|+++..+..++.++...|++++|++.+++.....+.
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999998876543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-16 Score=174.10 Aligned_cols=351 Identities=10% Similarity=-0.036 Sum_probs=276.3
Q ss_pred HhcCCchHHHHHHHHHHHC--CCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044628 239 ALNCLGDGAIAVFNLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316 (665)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 316 (665)
.+..+|+.-.-+|..-.+. .-.-+..-...++..+.+.|+.+.|..+++..+... +-+......++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 3455555544444433221 011233345566778889999999999999999876 4445555566677778999999
Q ss_pred HHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHhCCCCchHhHHHHHHHHHH
Q 044628 317 ACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD-EVTLASILSSCGSLSISCETRQVHAYAIK 392 (665)
Q Consensus 317 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 392 (665)
|...|+++.+ .+...|..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|+.+.|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999865 35567888999999999999999999999874 454 45667778889999999999999998877
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 044628 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIA 467 (665)
Q Consensus 393 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 467 (665)
....+.. .+..+. .+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...
T Consensus 173 ~~P~~~~-a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 173 EVPPRGD-MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred hCCCCHH-HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 6544333 333333 478899999999999987642 3344455677889999999999999999986 454 467
Q ss_pred HHHHHHHHhcCCcHHH----HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHH
Q 044628 468 FLEVLSACSHGGLVSE----GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIG 541 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 541 (665)
+..+...+...|++++ |...|+.+.+. -+.+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788889999999986 89999999872 2335778899999999999999999999998 55665 556777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
++...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 899999999999999999999999877777789999999999999999999876544
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.2e-14 Score=151.70 Aligned_cols=522 Identities=12% Similarity=0.043 Sum_probs=374.0
Q ss_pred HHHHHHhh--ccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHH--
Q 044628 67 SQALKVSA--KFGFLQQGKQLHSHIMKL--GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGII-- 140 (665)
Q Consensus 67 ~~ll~~~~--~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-- 140 (665)
..+.++|. ..+++..+..+|...+.. ...+|+.+. +-..+.++|+.+.|+..|.+..+-|+..-++++....
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 34445554 457899999999997764 456676553 3366779999999999999888766655555543321
Q ss_pred -hCCCCc-----hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCC
Q 044628 141 -NCGGNV-----TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN--CFVSSALVDLYGKCGF 212 (665)
Q Consensus 141 -~~~~~~-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~ 212 (665)
...+.+ +.++...-.. -.-|+...+.|-..+.-.|+++.+..+...++....... ...|--+.++|-..|+
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 122222 2222222111 234677888888899999999999999999988752211 3346678899999999
Q ss_pred hHHHHHHHhccCCC--C--chhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC----CcHHHHH
Q 044628 213 VEDARRVFDEVLCR--D--LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG----SSKLGRQ 284 (665)
Q Consensus 213 ~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~ 284 (665)
+++|...|.+.... | +..+--+...|.+.|+.+.+...|+...+.. +-+..|...+...|+..+ ..+.|..
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 99999999877443 2 3456678889999999999999999998752 234566666666676664 4566777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc--------CCCCchhHHHHHHHHHcCCChHHHHHHHHHHh
Q 044628 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM--------TAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356 (665)
Q Consensus 285 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 356 (665)
+.....+.- +.|...|-.+..+|....-+.. +.+|... ....+...|.+...+...|++++|...|....
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 777766654 6677788888887766544332 4444333 23466778999999999999999999999886
Q ss_pred hC---CCCCCH-----HHHH-HHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 044628 357 QG---SFCPDE-----VTLA-SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK- 426 (665)
Q Consensus 357 ~~---g~~p~~-----~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 426 (665)
.. ...+|. .|.. .+....-..++.+.|.++|..+.+... .-+..|-.|..+.-..+...+|...++...
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 54 223333 2222 233344567799999999999988642 112222233323333467778888888776
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------CCcHHHHHHHHHHH
Q 044628 427 --EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSH------------GGLVSEGLRYFNLM 491 (665)
Q Consensus 427 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~ 491 (665)
+.|+..|.-+...|....++..|.+-|+...+.- ..+|.....+|.+.|.+ .+..++|+++|.++
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 3677888888889999999999998777766532 23677777777775543 24577899999988
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC
Q 044628 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE--PSKP 567 (665)
Q Consensus 492 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~ 567 (665)
.+ .-+.|...-+.+.-.++..|++.+|.++|.+. ...-...+|..+...|...|++..|++.|+..++.. .+++
T Consensus 639 L~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred Hh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 87 34557778888889999999999999999988 233356789999999999999999999999998643 4467
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+...|+.++.+.|+|.+|.+.........
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 888899999999999999999988776544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.5e-14 Score=158.19 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=88.8
Q ss_pred HHHhcCCHHHHHHHHhcCCCC--C--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhcC
Q 044628 408 AYSKCGSIAGALQCFGSVKEP--D--LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-----RPDSIAFLEVLSACSHG 478 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~ 478 (665)
++.+.|+..++.+.|+.+... . ...-..+..+|...+++++|+.+|+++....- .++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 344455555555555555421 1 11233345555555555555555555544210 11112234445555555
Q ss_pred CcHHHHHHHHHHHHHhcC----------CCCC---hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 044628 479 GLVSEGLRYFNLMISDYH----------ILPD---SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGAC 543 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 543 (665)
+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555544100 0011 112233344455555555555555555 2233 344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
...|...+|++.++.+..++|++..+...++..+...|+|++|..+.+.+
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555444
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=7.5e-15 Score=160.85 Aligned_cols=388 Identities=11% Similarity=-0.049 Sum_probs=273.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccC--CCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHHhc
Q 044628 199 VSSALVDLYGKCGFVEDARRVFDEVL--CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGT 275 (665)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 275 (665)
.+..+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+++..+. .| +...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 45566778888999999999998873 356778888889999999999999999998875 34 45577778888899
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHH
Q 044628 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355 (665)
Q Consensus 276 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 355 (665)
.|++++|...+..+...+-..+.. ...++..+.+......+...++.-+ .+..++..+.. |......+.+..-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 999999988887666553222222 2222222222222334444443322 23334443332 32222222222222211
Q ss_pred hhCCCCCCH-HHHHHHH---HHhCCCCchHhHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 044628 356 LQGSFCPDE-VTLASIL---SSCGSLSISCETRQVHAYAIKNG-V-QAFLSIENALINAYSKCGSIAGALQCFGSVKE-- 427 (665)
Q Consensus 356 ~~~g~~p~~-~t~~~ll---~~~~~~~~~~~a~~i~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 427 (665)
.. ..|+. ..+..+- .-....+.+++|...+....+.+ . +.....++.+...+...|++++|...|++..+
T Consensus 284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11 11111 0011100 11134567899999999988865 2 33456788888999999999999999998764
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH
Q 044628 428 P-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505 (665)
Q Consensus 428 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 505 (665)
| +...|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|+..|+...+ ..+.+...+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 3 3568888999999999999999999999885 45 456888888999999999999999999987 2333577788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-------HHHH
Q 044628 506 CLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL-------VSNV 576 (665)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~ 576 (665)
.+..++.+.|++++|+..|++. ...|+ ...|..+...+...|++++|+..++++++++|++...+.. ....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8999999999999999999988 55564 6788888899999999999999999999999975443321 1223
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 044628 577 YASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~~~ 597 (665)
|...|++++|.+++++.....
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC
Confidence 445799999999999887654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=4.6e-14 Score=154.41 Aligned_cols=427 Identities=9% Similarity=-0.007 Sum_probs=265.5
Q ss_pred HhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCchHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHH
Q 044628 107 VYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHS 186 (665)
Q Consensus 107 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 186 (665)
...+.|+++.|+..|++..+.+... ......++..+...|+.++|..+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~------------------------------~~av~dll~l~~~~G~~~~A~~~~e 92 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQ------------------------------SGQVDDWLQIAGWAGRDQEVIDVYE 92 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccc------------------------------hhhHHHHHHHHHHcCCcHHHHHHHH
Confidence 4568899999999988876433221 0011133344444455555555555
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 044628 187 FILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263 (665)
Q Consensus 187 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 263 (665)
..+.. -.........+...|...|++++|.++|+++... |...+..++..+.+.++.++|++.++++... .|+.
T Consensus 93 ka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~ 169 (822)
T PRK14574 93 RYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTV 169 (822)
T ss_pred HhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Ccch
Confidence 55410 0111222222234555555666666555555322 2334445555555556666666655555443 3343
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhH------HH
Q 044628 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSW------NT 334 (665)
Q Consensus 264 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~------~~ 334 (665)
..+..++..+...++..+|.+.++++++.. +.+...+..++....+.|-...|.++..+-++ +...-| ..
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 333222222222333434555566555553 44455555555666666666666655554432 000000 00
Q ss_pred HHH-HH----HcCCC---hHHHHHHHHHHhhC-CCCCCHH-----HHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchh
Q 044628 335 MVV-GF----GQNGD---GREAVKLLRDMLQG-SFCPDEV-----TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400 (665)
Q Consensus 335 li~-~~----~~~g~---~~~A~~~~~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 400 (665)
+|+ +. ...++ .+.|+.-++.+... +-.|... ...--+-++...++..++...++.+...+.+....
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 010 00 01112 34455555555441 2223221 22234556778888999999999999888777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----------
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKEP---------DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV---------- 461 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------- 461 (665)
+-.++.++|...+++++|..+|..+... +......|.-+|...+++++|..+++++.+.-.
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 8889999999999999999999987431 233356788899999999999999999988311
Q ss_pred -CCCH--H-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhH
Q 044628 462 -RPDS--I-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDT 535 (665)
Q Consensus 462 -~p~~--~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~ 535 (665)
.||. . .+..+...+...|++.+|++.++.+.. .-+-|......+.+++...|++.+|++.++.. ...|+ ..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 2332 2 344556778899999999999999987 34557889999999999999999999999887 66775 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
......+....+++.+|..+.+.+++..|+++.+
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 6667788888999999999999999999998754
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.3e-13 Score=131.26 Aligned_cols=420 Identities=17% Similarity=0.156 Sum_probs=288.5
Q ss_pred cccHHHHHHHHHhCCCCc-hHHHHHhhhCCCCCCcchHHHHHHHHh--cCCChHHH-HHHHHHHHHhCCCCchHHHHHHH
Q 044628 129 IVTWNTLISGIINCGGNV-TPYFRRMLLDNVRLDHITFNSLLRACV--QADDIEVG-RRLHSFILKVGFGLNCFVSSALV 204 (665)
Q Consensus 129 ~~~~~~li~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li 204 (665)
+++=|.|+....+..-.+ .-+++.|...|+..+...-..|++..+ ...++.-+ .+.|-.|.+.|-. +..+
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s----- 189 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS----- 189 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc-----
Confidence 345566665443333223 777888888887777666666655433 23333322 1233334333322 1222
Q ss_pred HHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHH
Q 044628 205 DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284 (665)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 284 (665)
.+.|++.+ ++-+...+...+|..||.|+|+--..+.|.++|++-.....+.+..+||.+|.+..- ..+++
T Consensus 190 ---WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 190 ---WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred ---cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 23455544 555556667789999999999999999999999999998889999999999987543 34489
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH----hccC----CCCchhHHHHHHHHHcCCChHH-HHHHHHHH
Q 044628 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF----DGMT----AKNVVSWNTMVVGFGQNGDGRE-AVKLLRDM 355 (665)
Q Consensus 285 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m 355 (665)
+..+|+...+.||..++|+++.+..+.|+++.|++.+ .+|+ +|...+|..+|..+++.++..+ |..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 9999999999999999999999999999988776554 4454 5888999999999999988754 55555555
Q ss_pred hhC--C--CC---C-CHHHHHHHHHHhCCCCchHhHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHH
Q 044628 356 LQG--S--FC---P-DEVTLASILSSCGSLSISCETRQVHAYAIKNG----VQAF---LSIENALINAYSKCGSIAGALQ 420 (665)
Q Consensus 356 ~~~--g--~~---p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~ 420 (665)
... | ++ | |..-|.+.++.|.+..+.+.|.+++..+.... +.++ ..-|..+..+.+....++.-..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2 22 3 45678899999999999999999998775321 2222 3446677788888889999999
Q ss_pred HHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-c---HH----------
Q 044628 421 CFGSVKE----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG-L---VS---------- 482 (665)
Q Consensus 421 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~---~~---------- 482 (665)
.|+.|.. |+..+...++++.-..|.++-.-+++.+|+..|..-+...-.-++.-+++.. . .+
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 9999874 7777888888888889999999999999888775555544444444444332 0 00
Q ss_pred HHHHHHHHHH----HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCChhHHHHHHHHHHhcCCHHH
Q 044628 483 EGLRYFNLMI----SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-------PIEPRSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 483 ~a~~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~ 551 (665)
-|..+++... +.....-.....++..-++.|.|+.++|.+++.-. +..|......-|+.+....++..+
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 0111111110 00112334556778888889999999998887544 344444444456677777788888
Q ss_pred HHHHHHHHHhcCC
Q 044628 552 AKWAAEKLLELEP 564 (665)
Q Consensus 552 a~~~~~~~~~~~p 564 (665)
|..+++.+.+.+-
T Consensus 580 A~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 580 AIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHcCc
Confidence 8888887766543
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.1e-13 Score=129.82 Aligned_cols=432 Identities=12% Similarity=0.077 Sum_probs=257.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhc--CCCh-HHHHHHHcccC---CCCcccHHHHHH
Q 044628 64 SFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVK--CKAF-DDMEKLFDEMR---VRNIVTWNTLIS 137 (665)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~-~~A~~~f~~~~---~~~~~~~~~li~ 137 (665)
.+=+.|++. ...|.+..+--++..|...|.+.++.+.-.|+..-+- ...+ -.-++.|-.|. +.+..+|.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK---- 191 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK---- 191 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc----
Confidence 455666654 4567888999999999999999888887776654332 2222 22234455554 33444442
Q ss_pred HHHhCCCCchHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHH
Q 044628 138 GIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDAR 217 (665)
Q Consensus 138 ~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 217 (665)
.|...--+|+. .+-+..||.++|.++|+--..+.|.+++.+......+.+..++|.+|.+-.-.-+ .
T Consensus 192 ----~G~vAdL~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 192 ----SGAVADLLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred ----cccHHHHHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 12111111221 2335667777777777777777777777777666666677777777754432222 4
Q ss_pred HHHhcc----CCCCchhHHHHHHHHHhcCCchH----HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHH-HHHHHHH
Q 044628 218 RVFDEV----LCRDLVLWNVMVSCYALNCLGDG----AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKL-GRQIHGL 288 (665)
Q Consensus 218 ~~~~~~----~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 288 (665)
++..+| ..||..++|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 444444 34677777777777777776654 56677788888888888888888887777776533 3333333
Q ss_pred HHH----hCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CchhHHHHHHHHHcCCChHHHH
Q 044628 289 VIK----QSF----DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-----------NVVSWNTMVVGFGQNGDGREAV 349 (665)
Q Consensus 289 ~~~----~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~ 349 (665)
+.. ..+ +.|...+...++.|.+..+.+-|..+-.-.... ...-|..+....|+....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222 224455666677777777777777765544321 1233566777888888899999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 044628 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPD 429 (665)
Q Consensus 350 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 429 (665)
.+|+.|.-.-+-|+..+...++++....+.++....++..++..|.........-+...+++.. ..|+
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~ 486 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPL 486 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCC
Confidence 9999999888889999999999999999999999999999988875544433333333333221 0122
Q ss_pred hhHHHHHHHHHHhc-CChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH--
Q 044628 430 LVTWTSIIGAYAFH-GLSKE-SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT-- 505 (665)
Q Consensus 430 ~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 505 (665)
...-..+-...++. -++.+ ....-.+|++..+.|.. .+.++-.+.+.|..++|.++|....+..+--|.....+
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~--l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm 564 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATS--LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAM 564 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhH--HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhH
Confidence 11111111111110 01111 11222344444333333 33334445677777777777777755433334333344
Q ss_pred -HHHHHHHhcCChHHHHHHHHhC
Q 044628 506 -CLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 506 -~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
-+++.-.+......|...++-|
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 4445555666777777776666
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.8e-13 Score=141.79 Aligned_cols=519 Identities=15% Similarity=0.094 Sum_probs=362.9
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC---ChHHHHHHHccc---CCCCcccHHHHHHHHHhCCCC
Q 044628 72 VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCK---AFDDMEKLFDEM---RVRNIVTWNTLISGIINCGGN 145 (665)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~~~~ 145 (665)
.+.+.++.+.|...|.+.++... .++..+-.|--+-.... .+..+..++... ...|++.-|.|-+-|.-.|+.
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy 286 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDY 286 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccH
Confidence 44677888889999988888541 12222222221112222 334444444433 245677788888888888887
Q ss_pred c--hHHHHHhhhCCC-C-CCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHh
Q 044628 146 V--TPYFRRMLLDNV-R-LDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFD 221 (665)
Q Consensus 146 ~--~~~~~~m~~~g~-~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (665)
. ..+...+...-. . .-..+|-.+-+++-..|++++|.+.|-+..+..-..-+..+-.|..+|.+.|+++.+...|+
T Consensus 287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 7 566655554321 1 11345778889999999999999999988876432224455678899999999999999999
Q ss_pred ccCCC---CchhHHHHHHHHHhcC----CchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHH----HH
Q 044628 222 EVLCR---DLVLWNVMVSCYALNC----LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL----VI 290 (665)
Q Consensus 222 ~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~ 290 (665)
.+... +..+...|...|+..+ ..+.|..++.+..+.- ..|...|..+-..+... +.......+.. +.
T Consensus 367 kv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 367 KVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILE 444 (1018)
T ss_pred HHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH
Confidence 98443 4455666666666665 4566777766665542 33566676666655544 33333555544 44
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CCc------hhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 044628 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA-------KNV------VSWNTMVVGFGQNGDGREAVKLLRDMLQ 357 (665)
Q Consensus 291 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 357 (665)
..+-.+.+.+.|.+...+...|+++.|...|++... +|. .+--.+...+-..++.+.|.+.|....+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 556678889999999999999999999999987653 222 1222355666677899999999999987
Q ss_pred CCCCCCHHH-HHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChh
Q 044628 358 GSFCPDEVT-LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PDLV 431 (665)
Q Consensus 358 ~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~ 431 (665)
. .|.-++ |..+.......+...++...+..+.... ..++.+++.+...|.+..++..|.+-|..+.+ +|..
T Consensus 525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 5 466554 3333323334567788888888776643 44556666777789998888888886655542 4555
Q ss_pred HHHHHHHHHH------------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 044628 432 TWTSIIGAYA------------FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499 (665)
Q Consensus 432 ~~~~li~~~~------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 499 (665)
+.-+|.+.|. ..+..++|+++|.+.++.. +-|...-+.+.-.++..|.+.+|..+|.++.+. ..-
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~ 678 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSD 678 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--Hhh
Confidence 5555555443 2345788999999998863 336677788888899999999999999999883 334
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
...+|-.+..+|..+|++..|+++|+.. .-..+..+...|..++...|.+.+|.+.+..+..+.|.++..-..++-
T Consensus 679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 5678899999999999999999999987 333467788899999999999999999999999999999877665554
Q ss_pred HHH-------------------hcCCHHHHHHHHHHHhhCCCc
Q 044628 576 VYA-------------------SERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 576 ~y~-------------------~~g~~~~A~~~~~~m~~~~~~ 599 (665)
+.. ..+..++|.++|..+...+-+
T Consensus 759 v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 759 VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 433 344578888888888876543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=3.1e-14 Score=136.13 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=170.0
Q ss_pred CCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHH
Q 044628 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEV 452 (665)
Q Consensus 376 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 452 (665)
..|++++|...+.+.....-......|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4578999999999988776554444554 3345778899999999998875 46777788888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 044628 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP 531 (665)
Q Consensus 453 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 531 (665)
+-+.... ++.|+..+.-|...|-+.|+-.+|.+++-.--+ -++.+.++..-|...|....-+++|+..|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9777653 444667888889999999999999998876544 46668888888999999999999999999999 7899
Q ss_pred ChhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 532 RSDTLGAFIGAC-KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 532 ~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
+.+-|..++.+| ++.|++..|...++.....-|.+......|..+....|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999766 678999999999999999999999999999998887774
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=2.1e-11 Score=122.31 Aligned_cols=489 Identities=12% Similarity=0.085 Sum_probs=331.1
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccC---CCCcccHHHHHHHHHhCCCCc-
Q 044628 71 KVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR---VRNIVTWNTLISGIINCGGNV- 146 (665)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~- 146 (665)
.+.......+.|+-++....+. ++.+...| -+|++...++.|.++++... ..+...|-+--..=-++|+.+
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 4445566677788888888774 23344444 45566677888988887664 456667765554445566554
Q ss_pred -hH----HHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCChHHHHHH
Q 044628 147 -TP----YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLN--CFVSSALVDLYGKCGFVEDARRV 219 (665)
Q Consensus 147 -~~----~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~ 219 (665)
.. -+..+...|+..|..-|-.=..+|-..|.+-.+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 22 244566778888888777777777777777777777777777776532 45666666677777777777777
Q ss_pred HhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC
Q 044628 220 FDEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL 296 (665)
Q Consensus 220 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 296 (665)
|....+ .+...|...+..=-..|..++-..+|++....- +-....|....+..-..|++..|..++..+.+.. +.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pn 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PN 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CC
Confidence 655432 244456555555555666666666666665541 1122222222333334455555555555555543 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 044628 297 DVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374 (665)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 374 (665)
+..+|-+-+..-..+.+++.|+.+|.+... +....|.--+.----.+..++|++++++..+. -|+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~----------- 683 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD----------- 683 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc-----------
Confidence 444555555555555555555555554432 33334433333333344455555555444432 222
Q ss_pred CCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 044628 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE--P-DLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 375 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+...|..
T Consensus 684 -----------------------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 684 -----------------------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred -----------------------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 234556677788888999999998887653 3 45678888888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 044628 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531 (665)
Q Consensus 452 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 531 (665)
++++.+-.+ +-|...|...++.=.+.|..++|..+..+..+ .++.+...|..-|.+..+.++-..+.+.+++.. .
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 999998863 33567888999999999999999999999988 466778889999999999999888888888874 4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEEEE
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEI 609 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~ 609 (665)
|+.+..++...+....+++.|+.-|+++++.+|++..+|..+-..+.+.|.-++-.+++++..... +.-|..|+-+
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 566677777888889999999999999999999999999999999999999999999998876543 3456777643
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=8.5e-11 Score=118.05 Aligned_cols=512 Identities=13% Similarity=0.060 Sum_probs=379.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcc-----------------cCCCCcccHHHHHHH
Q 044628 76 FGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDE-----------------MRVRNIVTWNTLISG 138 (665)
Q Consensus 76 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-----------------~~~~~~~~~~~li~~ 138 (665)
.++...|+-++....+.+ +.++.-|-+-...=-..|.+..|+.+..+ +..|++ --++|.-
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~--aK~vvA~ 340 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDV--AKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHH--HHHHHHH
Confidence 356777888888888765 23333443333333344555555554432 122332 3334433
Q ss_pred HHhCCCCc-----------------hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHH
Q 044628 139 IINCGGNV-----------------TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201 (665)
Q Consensus 139 ~~~~~~~~-----------------~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 201 (665)
-++.--.. .+++++-.+. -|+.+. |=++.....+.+.|.-++...++.- +.+...|.
T Consensus 341 Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLwl 414 (913)
T KOG0495|consen 341 AVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLWL 414 (913)
T ss_pred HHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH
Confidence 33332111 2334433332 243332 3344555667777888888888863 33344444
Q ss_pred HHHHHHHhCCChHHHHHHHhcc---CCCCchhHHHHHHHHHhcCCchHHHHHHHH----HHHCCCCCCHhhHHHHHHHHh
Q 044628 202 ALVDLYGKCGFVEDARRVFDEV---LCRDLVLWNVMVSCYALNCLGDGAIAVFNL----MRLEGMKGDYFTFSSLVNSCG 274 (665)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~ 274 (665)
+|++..-++.|.++++.. ...+...|-+-..-=-.+|+.+...+++++ +...|+..+...|..=..+|-
T Consensus 415 ----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 415 ----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 455666778888887655 445788888877777788998888887765 456799999999999899999
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHH
Q 044628 275 TLGSSKLGRQIHGLVIKQSFDLD--VLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAV 349 (665)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 349 (665)
..|..-.+..|...++..|+... ..+|+.-.+.|.+.+.++-|+.+|....+ .+...|...+..--..|..++-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999999988553 46788888999999999999999988765 45677888887777889999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--C
Q 044628 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK--E 427 (665)
Q Consensus 350 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 427 (665)
.+|++....- +-....+.......-..|++..|+.++..+.+... .+..++-+-+..-.....++.|+.+|.+.. .
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 9999998753 22334444444556667999999999999988764 378888889999999999999999999876 4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHH
Q 044628 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506 (665)
Q Consensus 428 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 506 (665)
++...|.--+...-..++.++|++++++.++. -|+.. .|..+.+.+-+.++++.|.+.|..-.+ .++-.+-.|-.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWll 724 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLL 724 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHH
Confidence 78888888888878889999999999999985 77775 677778889999999999999988776 34455778889
Q ss_pred HHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------------------
Q 044628 507 LTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK------------------ 566 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------------------ 566 (665)
|.++=.+.|.+-.|..++++. ..+.+...|...+..-.++|+.++|...+.++++--|.+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 999999999999999999998 333468899999999999999999999988887555543
Q ss_pred ------------CchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeE
Q 044628 567 ------------PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606 (665)
Q Consensus 567 ------------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 606 (665)
+.+....+.++....+++.|++.|.+..+.+..--..+.|
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 4456677888888999999999999888766543333333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=3.3e-12 Score=133.11 Aligned_cols=326 Identities=13% Similarity=0.085 Sum_probs=196.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCchhHHHHHHHHHcCCChHHHHHHHH
Q 044628 277 GSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM---TAKNVVSWNTMVVGFGQNGDGREAVKLLR 353 (665)
Q Consensus 277 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 353 (665)
|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+--. ...|...|-.+..-..+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555443 334444455555555555555544433221 22334445444444555555555555555
Q ss_pred HHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHhcCCC--
Q 044628 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA----LINAYSKCGSIAGALQCFGSVKE-- 427 (665)
Q Consensus 354 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~-- 427 (665)
+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 544432 12222222223334444555555444444444333222222222 23344455555666666655442
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHHHhc
Q 044628 428 ---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP---------------------------DSIAFLEVLSACSH 477 (665)
Q Consensus 428 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~t~~~ll~a~~~ 477 (665)
-+...++.++..|.+...++.|......+.....++ +... ..+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 334456777777777777777777777776622222 2222 112222333
Q ss_pred CCcHHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHH
Q 044628 478 GGLVSEGLRYFNLMISDYHILP--DSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a 552 (665)
....+....+...... ..+.| +...|.-+.++|...|++.+|++++..+ +...+..+|-.+...+...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333433 34333 5778899999999999999999999999 2223477999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeE
Q 044628 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606 (665)
Q Consensus 553 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 606 (665)
.+.+++++.+.|++..+-..|+.+|.+.|+.|+|.+++..+..-+.++.++++|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999988666666777777
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=4e-15 Score=146.38 Aligned_cols=253 Identities=21% Similarity=0.140 Sum_probs=113.4
Q ss_pred HHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHH-HhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 044628 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS-SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSI 415 (665)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 415 (665)
..+.+.|++++|++++++.......|+...|-.++. .+-..++.+.|.+.++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 344445555555555543332221233333333222 233345555555555555544322 34445566666 678888
Q ss_pred HHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 416 AGALQCFGSVK--EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 416 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
++|.+++...- .++...+..++..+...|+++++.++++++.... ..++...|..+...+.+.|+.++|++++++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988887664 3667778888889999999999999999987643 23455677788888999999999999999998
Q ss_pred HhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 493 SDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 493 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
+ ..| |......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+.+|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 7 356 4778889999999999999988888777 224567788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 570 YALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 570 ~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
...+++++...|+.++|.+++++.-
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999988764
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=1.1e-11 Score=128.57 Aligned_cols=520 Identities=10% Similarity=-0.022 Sum_probs=298.9
Q ss_pred ccCCChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHH
Q 044628 58 STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLIS 137 (665)
Q Consensus 58 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 137 (665)
|+.|+.+||.+++..|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|...+|+.|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 99999999999999999999999998 9999998888889999999999999999887765 778889999999
Q ss_pred HHHhCCCCc-hHHHHH-hh-------hCCCCCCcchHHHHHHHHhcCC-C------hHHHHHHHHHHHHhCC-CCchHHH
Q 044628 138 GIINCGGNV-TPYFRR-ML-------LDNVRLDHITFNSLLRACVQAD-D------IEVGRRLHSFILKVGF-GLNCFVS 200 (665)
Q Consensus 138 ~~~~~~~~~-~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~~g~-~~~~~~~ 200 (665)
+|.+.|+.. ++..++ |. ..|+.--..-|-..+++|-..- + ..--+.+++..++.+. .|...-+
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 999999987 555554 22 1232222222222222221110 0 0011223333333331 1111111
Q ss_pred HH---HHHHHHh-CCChHHHHHHHhccC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 044628 201 SA---LVDLYGK-CGFVEDARRVFDEVL-CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275 (665)
Q Consensus 201 ~~---li~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 275 (665)
+. .++-... ...+++-........ .++..+|.+.+.+-..+|+.+.|..++.+|++.|+..+..-|-.++-+
T Consensus 172 ~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g--- 248 (1088)
T KOG4318|consen 172 APFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG--- 248 (1088)
T ss_pred chHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---
Confidence 11 1111111 122333333333333 478889999999999999999999999999999998888877777765
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChH-----HHHH
Q 044628 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR-----EAVK 350 (665)
Q Consensus 276 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~ 350 (665)
.++...+..+..-|...|+.|+..|+.--+-.+.++|....+.+..+.-.--....+..+..+...+.+.+ -...
T Consensus 249 ~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~ 328 (1088)
T KOG4318|consen 249 INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIG 328 (1088)
T ss_pred CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHH
Confidence 78888888999999999999999998877777777665333222211100001112233333311111111 1222
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 044628 351 LLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ---AFLSIENALINAYSKCGSIAGALQCFGSVKE 427 (665)
Q Consensus 351 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 427 (665)
.+.+..-.|+.-....|..... ....|.-+...++-..+..--.. .++..+..+ +.+.|.+...
T Consensus 329 s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~ 395 (1088)
T KOG4318|consen 329 STKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIER 395 (1088)
T ss_pred HhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------HHHHHHHHHh
Confidence 2233222343333333322222 22256666666666555322111 122222222 3344444443
Q ss_pred CChhHHHHHHHHHHh---cCChHHHHHHHHHH------------HH----cCCCC-------CHHHHHHHHHHHhcCCcH
Q 044628 428 PDLVTWTSIIGAYAF---HGLSKESIEVFEKM------------LS----HAVRP-------DSIAFLEVLSACSHGGLV 481 (665)
Q Consensus 428 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------~~~t~~~ll~a~~~~g~~ 481 (665)
+....-.-.-.+... ..+..+..++.... .. +-+.| =...-..++..|+..-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222111111111111 11111111111111 10 00111 011233444555555555
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-----IEPRSDTLGAFIGACKVHGSIGLAKWAA 556 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 556 (665)
.+++..-+.... +-+ + ..|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+++....+..++
T Consensus 476 lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 555544444333 112 2 678999999999999999999999882 2334555677778888888888888888
Q ss_pred HHHHh---cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeE
Q 044628 557 EKLLE---LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606 (665)
Q Consensus 557 ~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 606 (665)
+...+ ..|........+.+--+..|+.+...++.+-+...|+.. .|.-|
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 77755 334334455566677788899999999999888888755 24444
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2.9e-11 Score=124.56 Aligned_cols=286 Identities=9% Similarity=-0.027 Sum_probs=199.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHH
Q 044628 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA--TSLVDMYAKNGNIDDAC 318 (665)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~ 318 (665)
.|++++|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 578888887776655432111 222333344456778888888888888764 3444322 23467788889999998
Q ss_pred HHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCC
Q 044628 319 RVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV 395 (665)
Q Consensus 319 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 395 (665)
..++.+.+ .+......+...|.+.|++++|++++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 88888765 35567778888889999999999999998887644322 1211100
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044628 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472 (665)
Q Consensus 396 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 472 (665)
..+..++....+..+.+...++++.+.+ .++.....+..++...|+.++|.+++++..+. .||.... ++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 0112223333334455666666666653 57778888888999999999999999888874 5555322 23
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHH
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 551 (665)
.+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|+.. ...|+...+..+...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444558889999999888873 3445667888889999999999999999988 778888888888889999999999
Q ss_pred HHHHHHHHHhcC
Q 044628 552 AKWAAEKLLELE 563 (665)
Q Consensus 552 a~~~~~~~~~~~ 563 (665)
|.+.+++.+.+-
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999999887754
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.7e-10 Score=111.66 Aligned_cols=352 Identities=15% Similarity=0.142 Sum_probs=231.2
Q ss_pred CCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHh--hHHHHHH
Q 044628 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF--TFSSLVN 271 (665)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 271 (665)
..|.+.+-..--.+-+.|....|+..|.+....-+..|.+.+.-.--..+.+.+..+. .|...|.. .=-.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHH
Confidence 4454444344445667788888888888776655555555444322222222222111 11111111 1112334
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------chhHHHHHHHHHcCCCh
Q 044628 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN------VVSWNTMVVGFGQNGDG 345 (665)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~ 345 (665)
++-.....+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+.| ..+|...+- +++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 455555667777777777777777666666666566666667777777777766532 234433331 121111
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044628 346 REAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425 (665)
Q Consensus 346 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 425 (665)
. +..+.+- ...+ . +--+.+...+.+-|+-.++.++|...|++.
T Consensus 314 k--Ls~LA~~-------------------------------v~~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRA 356 (559)
T KOG1155|consen 314 K--LSYLAQN-------------------------------VSNI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRA 356 (559)
T ss_pred H--HHHHHHH-------------------------------HHHh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence 1 0111000 0000 0 111233345566778888889999999887
Q ss_pred CC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-C
Q 044628 426 KE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-D 500 (665)
Q Consensus 426 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 500 (665)
.+ .....|+.|..-|....+...|++-++..++- .| |-..|-.|.++|.-.+...-|+-+|++... ++| |
T Consensus 357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnD 431 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPND 431 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCc
Confidence 64 45568999999999999999999999999874 45 667899999999999999999999999876 445 6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCchHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE-------LEPSKPVNYA 571 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~ 571 (665)
...|.+|.++|.+.++.++|++.|.+. ....+...+..|...+...++.++|.+.+++-++ .+|+...+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 889999999999999999999999988 2233557788889999999999999999998876 4454455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 044628 572 LVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 572 ~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
-|+.-+.+.++|++|...-....
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHh
Confidence 78888999999999988765544
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=9.8e-11 Score=113.94 Aligned_cols=395 Identities=13% Similarity=0.049 Sum_probs=256.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCChHHHHHHHhccCCCCch---hHHHHHHHHHhcCCch
Q 044628 170 RACVQADDIEVGRRLHSFILKVGFGLN-CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLV---LWNVMVSCYALNCLGD 245 (665)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 245 (665)
+-|-+.|.+++|.+.+.+.+.. .|| +.-|.....+|...|++++..+--....+-+.. .+..-.+++-+.|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 4577889999999999999985 566 788888999999999999888776655443332 4444455666677777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044628 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG--------LVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317 (665)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 317 (665)
+|+.=. |...++..+....-.-.+.+++. +-.+.+-+|.... ...|..|...
T Consensus 201 eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~s------ 260 (606)
T KOG0547|consen 201 EALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGS------ 260 (606)
T ss_pred HHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhh------
Confidence 765422 22223333222222222222222 2222111222221 2233333221
Q ss_pred HHHHhccC-----CCCchhHHHHHHHHH----c-CCChHHHHHHHHHHhhCC-CCC-----CHH----HHHHHHHH--hC
Q 044628 318 CRVFDGMT-----AKNVVSWNTMVVGFG----Q-NGDGREAVKLLRDMLQGS-FCP-----DEV----TLASILSS--CG 375 (665)
Q Consensus 318 ~~~~~~~~-----~~~~~~~~~li~~~~----~-~g~~~~A~~~~~~m~~~g-~~p-----~~~----t~~~ll~~--~~ 375 (665)
|..=+ .+...+.-.+..++. . ...+.+|...+.+-.... ..+ |.. .-..++.+ ..
T Consensus 261 ---F~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 261 ---FHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred ---ccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 11100 011111212221111 1 112334444333321100 011 110 11112222 22
Q ss_pred CCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 044628 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEV 452 (665)
Q Consensus 376 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 452 (665)
-.|+.-.+.+-++..++....++. .|--+..+|....+.++-.+.|++..+ .|..+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 347777788888888876544333 255566778999999999999998763 5677888888888888999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 044628 453 FEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIE 530 (665)
Q Consensus 453 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 530 (665)
|++.+.. .|+. ..|.-+..+..+.+.++++...|+..++ .++..+++|+-....+...++++.|.+.|+.. .++
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999984 6644 5788888888889999999999999998 57777999999999999999999999999987 444
Q ss_pred CC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 531 PR---------SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 531 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
|+ +.+-.+++-.-++ +++.+|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44 3333344433344 8999999999999999999999999999999999999999999987653
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=2.6e-09 Score=111.96 Aligned_cols=341 Identities=13% Similarity=0.132 Sum_probs=244.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHccc---CCCCcccHHHHHHHHHhCCCCc--hHH
Q 044628 75 KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM---RVRNIVTWNTLISGIINCGGNV--TPY 149 (665)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~~~~~--~~~ 149 (665)
..|+++.|..++..+++.. +.....|-.|-..|-..|+.+++...+--. ...|..-|-.+-.-..+.|... .-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 4499999999999999975 456778999999999999999988765433 3455666777777777777666 445
Q ss_pred HHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHH----HHHHHhCCChHHHHHHHhccCC
Q 044628 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSAL----VDLYGKCGFVEDARRVFDEVLC 225 (665)
Q Consensus 150 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~ 225 (665)
|.+..+.. +++-..+---...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55554432 233334444456677889999999999999887543333333333 4556667777888888887754
Q ss_pred --C---CchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----------------------HhhH----HHHHHHHh
Q 044628 226 --R---DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD----------------------YFTF----SSLVNSCG 274 (665)
Q Consensus 226 --~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------~~t~----~~ll~~~~ 274 (665)
. +...+|.++..|.+...++.|......+......+| ...| .-+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 445788999999999999999999888876222121 1111 12333345
Q ss_pred ccCCcHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCchhHHHHHHHHHcCCChHHH
Q 044628 275 TLGSSKLGRQIHGLVIKQSF--DLDVLVATSLVDMYAKNGNIDDACRVFDGMTA----KNVVSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 348 (665)
.....+....+.....+..+ .-+...|.-+.++|...|++.+|.++|..+.. .+...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 66667777777777777774 34567788999999999999999999999875 4667899999999999999999
Q ss_pred HHHHHHHhhCCCCCCHH-HHHHHHHHhCCCCchHhHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044628 349 VKLLRDMLQGSFCPDEV-TLASILSSCGSLSISCETRQVHAYAI--------KNGVQAFLSIENALINAYSKCGSIAGAL 419 (665)
Q Consensus 349 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~ 419 (665)
++.|+..... .|+.. .-.+|-..+.+.|+.++|.+.+..+. ..+..|...+.--..+.|.+.|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999998874 45433 33455556778999999999888743 2344556666666677788888877643
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.3e-09 Score=102.95 Aligned_cols=479 Identities=13% Similarity=0.061 Sum_probs=344.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccC----CCCcccHHHHHHHHHhCCCCchHH
Q 044628 74 AKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR----VRNIVTWNTLISGIINCGGNVTPY 149 (665)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~~~~~~~~ 149 (665)
-..+++..|+.+|...+.-. ..+...|-.-+.+=.++..+..|+.++++.. .-|..-|- - -.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y------------~y 149 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-Y------------IY 149 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-H------------HH
Confidence 45677888999999988755 4677788888888889999999999998753 11111110 0 01
Q ss_pred HHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhcc--CCCC
Q 044628 150 FRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEV--LCRD 227 (665)
Q Consensus 150 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~ 227 (665)
.+ -..|++..|.++|+.-.+ ..|+...|++.|+.=.+-..++.|+.++++. ..|+
T Consensus 150 mE---------------------E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 150 ME---------------------EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HH---------------------HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 11 235788999999998877 4799999999999999999999999999986 5689
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHH----hccCCcHHHHHHHHHHHHhCCCCc--hhHH
Q 044628 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC----GTLGSSKLGRQIHGLVIKQSFDLD--VLVA 301 (665)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~ 301 (665)
+.+|--....=-++|+...|..+|....+. -.|...-..+..++ .....++.|.-++..++..= +.+ ...|
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~ 283 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELY 283 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHH
Confidence 999988888888999999999999887653 12333323333333 45567888888888888762 333 4556
Q ss_pred HHHHHHHHhcCCHHHHHHHH--------hccCCC---CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH------
Q 044628 302 TSLVDMYAKNGNIDDACRVF--------DGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE------ 364 (665)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 364 (665)
..+...=-+-|+.....+.. +.+... |-.+|--.+..--..|+.+...++|++.+.. ++|-.
T Consensus 284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~ 362 (677)
T KOG1915|consen 284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHH
Confidence 66665555666644433332 222222 5567777888888889999999999999875 45532
Q ss_pred -HHHHHHHHHh---CCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhcCC--CCChhHHH
Q 044628 365 -VTLASILSSC---GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS----KCGSIAGALQCFGSVK--EPDLVTWT 434 (665)
Q Consensus 365 -~t~~~ll~~~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~ 434 (665)
..|..+=-+| ....+.+.++++++..++ -++....++.-+=-+|+ ++.++..|.+++.... .|-..++.
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 2222222222 346788999999998888 44555666665555554 6889999999998876 47788888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 044628 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514 (665)
Q Consensus 435 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 514 (665)
.-|..=.+.++++.+..+|++.++-+ +-|..++......=...|+.+.|..+|+-+++...+.--...|.+.|+.=...
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 88888899999999999999999863 33567888777777788999999999999988433333355677888888899
Q ss_pred CChHHHHHHHHhC-CCCCChhHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh----cCCCC--CchHH
Q 044628 515 GLLVEAYDLLASM-PIEPRSDTLGAFIGACK-----VHG-----------SIGLAKWAAEKLLE----LEPSK--PVNYA 571 (665)
Q Consensus 515 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~--~~~~~ 571 (665)
|.++.|..++++. ...+...+|-++...-. ..+ +...|+.+|+++.. .+|.. ....-
T Consensus 521 ~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLE 600 (677)
T KOG1915|consen 521 GEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLE 600 (677)
T ss_pred chHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999999998 55566778988874433 334 56788999998864 33432 12233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 572 LVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 572 ~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.+-++-...|...+...+-.+|.+
T Consensus 601 aw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 601 AWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHHHhcCchhhHHHHHHhccH
Confidence 445556677877777777777653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.6e-12 Score=128.06 Aligned_cols=273 Identities=14% Similarity=0.042 Sum_probs=162.8
Q ss_pred CHHHHHHHHhccCC--CCc-hhHHHHHHHHHcCCChHHHHHHHHHHhhCC-C-CCCHHHHHHHHHHhCCCCchHhHHHHH
Q 044628 313 NIDDACRVFDGMTA--KNV-VSWNTMVVGFGQNGDGREAVKLLRDMLQGS-F-CPDEVTLASILSSCGSLSISCETRQVH 387 (665)
Q Consensus 313 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~~~~~~~~~~~a~~i~ 387 (665)
+..+|...|..++. .|. .....+..+|...+++++|.++|+...+.. . .-+..+|.++|--+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677788877654 233 333456677888888888888888877642 1 1234566666544321 1111222
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044628 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP---DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464 (665)
Q Consensus 388 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 464 (665)
..-.-.--+..+.+|-++...|+-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 21111122345566677777777777777777777766542 334556565666666677777777766654 3444
Q ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHH
Q 044628 465 S-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFI 540 (665)
Q Consensus 465 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 540 (665)
. ..|..+...|.+.++++.|+-.|+.+.+ +.| +.....++...+.+.|+.|+|+++++++ ..+| |+..----.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4 2555666667777777777777776654 445 3444455566666777777777777766 3333 333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
..+...++.++|.+.+|++.++-|++..+|.+++.+|.+.|+.+.|..-|-.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 444556667777777777777777777777777777777777766666555443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=3.9e-11 Score=123.60 Aligned_cols=275 Identities=11% Similarity=0.016 Sum_probs=189.6
Q ss_pred cCCHHHHHHHHhccCCC--Cch-hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHhCCCCchHhHHH
Q 044628 311 NGNIDDACRVFDGMTAK--NVV-SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA--SILSSCGSLSISCETRQ 385 (665)
Q Consensus 311 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 385 (665)
.|+++.|++......+. ++. .|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 122 2222233335667777777777766553 34433222 22344556677777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Chh--------HHHHHHHHHHhcCChHHHHHHHH
Q 044628 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP---DLV--------TWTSIIGAYAFHGLSKESIEVFE 454 (665)
Q Consensus 386 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--------~~~~li~~~~~~g~~~~A~~~~~ 454 (665)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777666655 445566677888888888898888888877642 111 33334444444555666667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 044628 455 KMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR- 532 (665)
Q Consensus 455 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 532 (665)
.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++++.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66543 244667888899999999999999999998876 34554322 233334569999999999988 55665
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.....++...|...+++++|++.++++++.+|++ ..+..++.++.+.|+.++|.+.+++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567788899999999999999999999999984 6688999999999999999999987754
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5e-12 Score=127.82 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 507 (665)
.+.+|-++.++|..+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+. .|..+|+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHH
Confidence 3444444444444444444444444444442 33 223444444444444444444444444432 333333332
Q ss_pred ---HHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 508 ---TDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 508 ---~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
.-.|.+.++++.|+-.|+++ .+.|. .+....+...+.+.|+.++|++++++++-++|.++-.-...+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 22344444444444444444 44442 22333333344444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHh
Q 044628 583 WFDVARLRKMMR 594 (665)
Q Consensus 583 ~~~A~~~~~~m~ 594 (665)
+++|.+.+++++
T Consensus 573 ~~eal~~LEeLk 584 (638)
T KOG1126|consen 573 YVEALQELEELK 584 (638)
T ss_pred hHHHHHHHHHHH
Confidence 444444444444
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.3e-10 Score=108.95 Aligned_cols=428 Identities=13% Similarity=0.081 Sum_probs=289.4
Q ss_pred chHHHHHH---HHhcCCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCChHHHHHHHhccCC--C------Cchh
Q 044628 163 ITFNSLLR---ACVQADDIEVGRRLHSFILKVGFGLNCFVSS-ALVDLYGKCGFVEDARRVFDEVLC--R------DLVL 230 (665)
Q Consensus 163 ~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 230 (665)
.||+.|.. -|.......+|...++.+++...-|+.-..- .+-+.|.+...+.+|++.++.... | .+..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 35655544 4555667788999999999988777764432 344678888999999998865422 2 2235
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC------------Cch
Q 044628 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFD------------LDV 298 (665)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~ 298 (665)
.|.+.-.|.+.|+++.|+..|+...+. .||-.+-..|+-.+...|+-+..++.|..++..-.. |+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 666667889999999999999998875 588887767777777789999999999999875322 222
Q ss_pred hHHHHHH-----HHHHhcCC--HHHHH----HHHhccCCCCch---hHH------------------HHHHHHHcCCChH
Q 044628 299 LVATSLV-----DMYAKNGN--IDDAC----RVFDGMTAKNVV---SWN------------------TMVVGFGQNGDGR 346 (665)
Q Consensus 299 ~~~~~li-----~~~~~~g~--~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~ 346 (665)
...|--| .-.-+.+. .+++. ++..-+..|+-. -|. .-...|.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222222 11111111 11111 122222223221 121 1123578899999
Q ss_pred HHHHHHHHHhhCCCCCCHHHH--HHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044628 347 EAVKLLRDMLQGSFCPDEVTL--ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424 (665)
Q Consensus 347 ~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (665)
.|+++++-..+..-+.-...- .+.|.-...-.++..|.+.-+..+... .-+......-...-...|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 999999888765432222221 222222223345566666555444322 11111111112233457999999999999
Q ss_pred CCCCChhHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh
Q 044628 425 VKEPDLVTWTSIIG---AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501 (665)
Q Consensus 425 ~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 501 (665)
....|...-.+|.+ .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 99877766555544 467789999999999888753 244556777788889899999999999998876 566688
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
...+.|.++|-+.|+-..|.+..-.- ..-| +..+..-|...|....=.+.++..++++--+.|+.......++.++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 99999999999999999999875444 3333 555555555666666678999999999999999866666677889999
Q ss_pred cCCHHHHHHHHHHHhhC
Q 044628 580 ERCWFDVARLRKMMRDN 596 (665)
Q Consensus 580 ~g~~~~A~~~~~~m~~~ 596 (665)
.|++..|.++++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999988754
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=2.2e-10 Score=118.81 Aligned_cols=289 Identities=11% Similarity=0.035 Sum_probs=159.1
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044628 239 ALNCLGDGAIAVFNLMRLEGMKGDYF-TFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA 317 (665)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 317 (665)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578888888888776654 34432 33344455667788888888888876653222223444456777778888888
Q ss_pred HHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhC
Q 044628 318 CRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNG 394 (665)
Q Consensus 318 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 394 (665)
...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+ ...+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHH----------------------
Confidence 888777764 244567777777888888888888888877765332 222211100
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---
Q 044628 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAF--- 468 (665)
Q Consensus 395 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 468 (665)
..+..+++.-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111122233444455555543 47777888888888888888888888888875 4544321
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh--C-CCCCChhHHHHHHHHHHh
Q 044628 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS--M-PIEPRSDTLGAFIGACKV 545 (665)
Q Consensus 469 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~ 545 (665)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111112233555555555555554211111112333444555555555555555552 2 334444444444445555
Q ss_pred cCCHHHHHHHHHHH
Q 044628 546 HGSIGLAKWAAEKL 559 (665)
Q Consensus 546 ~g~~~~a~~~~~~~ 559 (665)
.|+.++|.+++++.
T Consensus 383 ~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 383 AGDKAEAAAMRQDS 396 (409)
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555544
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.1e-10 Score=106.68 Aligned_cols=326 Identities=10% Similarity=0.014 Sum_probs=234.0
Q ss_pred CCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchh-HHHHHHHH
Q 044628 261 GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVS-WNTMVVGF 339 (665)
Q Consensus 261 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~ 339 (665)
-|...+-...-...+.|....|...+...+..- +..-..|..|.+ -.-+.+.+..+....+..+... =-.+..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~---lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSE---LITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHH---hhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344433333334556677777777777766432 333333333332 2334444444443443322111 11234566
Q ss_pred HcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHH
Q 044628 340 GQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQ--AFLSIENALINAYSKCGSIAG 417 (665)
Q Consensus 340 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~ 417 (665)
....+.++++.-.......|..-+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++-.--.+.++.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 666678888888888888876555544444444556778999999999999887431 256667666533333223222
Q ss_pred -HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 044628 418 -ALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDY 495 (665)
Q Consensus 418 -A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 495 (665)
|..++ .+.+--+.|..++.+-|...++.++|...|++..+. .|.. ..|+.+..-|....+...|++-++.+++
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 33332 333445667777888899999999999999999985 5655 4677777889999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 496 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
-.+-|-..|-.|..+|.-.+...=|+-.|+++ ..+| |...|.+|...|.+.++.++|++.+++++..+-.+..+|+.|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 23347889999999999999999999999999 7777 688999999999999999999999999999988888999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 044628 574 SNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 574 ~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
+++|-+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=9.2e-11 Score=121.54 Aligned_cols=282 Identities=11% Similarity=0.001 Sum_probs=194.4
Q ss_pred HhCCChHHHHHHHhccCCC--C-chhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCCcHHH
Q 044628 208 GKCGFVEDARRVFDEVLCR--D-LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF--TFSSLVNSCGTLGSSKLG 282 (665)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 282 (665)
...|+++.|++.+....+. + ...+-.......+.|+.+.|.+.|.+..+.. |+.. .-......+...|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887543 2 2234444567788899999999999987643 5543 333346677889999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHH----HHHHHcCCChHHHHHHHHHH
Q 044628 283 RQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKN---VVSWNTM----VVGFGQNGDGREAVKLLRDM 355 (665)
Q Consensus 283 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l----i~~~~~~g~~~~A~~~~~~m 355 (665)
...++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+.. ...+..+ ..++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 6677889999999999999999999999887542 2222111 11112112222222222222
Q ss_pred hhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhH-
Q 044628 356 LQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE--PDLVT- 432 (665)
Q Consensus 356 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~- 432 (665)
.... |+ ..+.+...+..+...+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 2211 10 0113455666777788888888888888887764 33331
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 044628 433 --WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI---AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507 (665)
Q Consensus 433 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 507 (665)
+..........++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|.+.|+.... ....|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 122222334457788889998888875 56554 455778889999999999999995333 3457998888899
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 044628 508 TDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~ 527 (665)
..++.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=1.4e-10 Score=120.54 Aligned_cols=431 Identities=11% Similarity=0.040 Sum_probs=222.2
Q ss_pred hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC
Q 044628 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226 (665)
Q Consensus 147 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (665)
..++..|...|+.||.+||..+|.-||..|+++.|- +|..|.-...+.+..+++.++......|+.+.+. .|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 356667777778888888888888888888877777 7777777666667777777777777777766655 55
Q ss_pred CchhHHHHHHHHHhcCCchH---HHHHHHHH----HHCCCCCCHhhHHHHHHHHhccC-Cc------HHHHHHHHHHHHh
Q 044628 227 DLVLWNVMVSCYALNCLGDG---AIAVFNLM----RLEGMKGDYFTFSSLVNSCGTLG-SS------KLGRQIHGLVIKQ 292 (665)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~---A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~~ 292 (665)
...+|+.|..+|.++|+..- +.+.+... ...|+..-..-+-..+.+|-..- +. .--+.++...++.
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777543 22211111 11222211111211111111100 00 0011122222222
Q ss_pred C--CCCchhHHHH--HHHHH-HhcCCHHHHHHHHhccCC-CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHH
Q 044628 293 S--FDLDVLVATS--LVDMY-AKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366 (665)
Q Consensus 293 g--~~~~~~~~~~--li~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 366 (665)
+ ++........ .++-. .-...+++-........+ ++..+|.+.+..-..+|+.+.|..++.+|.+.|+..+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 2 1110000000 01111 111223333333333333 5666677777766667777777777777777776666665
Q ss_pred HHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH------------------------HHHH
Q 044628 367 LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA------------------------LQCF 422 (665)
Q Consensus 367 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A------------------------~~~~ 422 (665)
|-.+|-+ .++......+.+-|...|+.|+..++.-.+....+.|....+ .+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 5555544 556666666666666677766666665544444432221111 1111
Q ss_pred hc---------CC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH-HHHHHHHHHHhcCC----
Q 044628 423 GS---------VK-------EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH--AVRPDS-IAFLEVLSACSHGG---- 479 (665)
Q Consensus 423 ~~---------~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-~t~~~ll~a~~~~g---- 479 (665)
+. .+ +.....|...+. ...+|..++..++...|..- .+.++. ..|..++.-|.+.-
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 11 11 011233333322 23367777777777776542 223322 24444443332211
Q ss_pred ------------------cHHHHHHHHHHHHHhcCCCCCh----------------------------hhHHHHHHHHHh
Q 044628 480 ------------------LVSEGLRYFNLMISDYHILPDS----------------------------EHYTCLTDLLGR 513 (665)
Q Consensus 480 ------------------~~~~a~~~~~~~~~~~~~~p~~----------------------------~~~~~l~~~~~~ 513 (665)
...+..++... ..||. ..-+.++..+++
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~------lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLEN------LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHH------hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 00111111110 11111 112233344444
Q ss_pred cCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhcCCHHHHHHHH
Q 044628 514 VGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS---KPVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 514 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
.-+..+++...++..-.-=...|..|+.-|..+...+.|....++....+.. +..-+..+.+++.+-+...++..+.
T Consensus 472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 4444555544333310001145777888888888888888888877654422 3456788999999999999999999
Q ss_pred HHHhh
Q 044628 591 KMMRD 595 (665)
Q Consensus 591 ~~m~~ 595 (665)
+.+++
T Consensus 552 ~e~ks 556 (1088)
T KOG4318|consen 552 YEDKS 556 (1088)
T ss_pred hhhhH
Confidence 88876
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=1.1e-12 Score=129.12 Aligned_cols=251 Identities=15% Similarity=0.146 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc-CC----CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCC
Q 044628 303 SLVDMYAKNGNIDDACRVFDGM-TA----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377 (665)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 377 (665)
.+..++.+.|++++|.++++.. .. .|...|..+.......++.++|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455566667777777776432 11 24445555555556667777777777777654422 33334444444 566
Q ss_pred CchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhcCChHHHHHH
Q 044628 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-----EPDLVTWTSIIGAYAFHGLSKESIEV 452 (665)
Q Consensus 378 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 452 (665)
++++.|..+.....+.. ++...+..++..|.+.|+++++.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777776665544432 344555667778888899999888888754 35777888899999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 044628 453 FEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIE 530 (665)
Q Consensus 453 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 530 (665)
+++..+. .|+ ......++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|+..+++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999986 675 567888889999999999999999988873 3567778889999999999999999999998 445
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 531 P-RSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 531 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
| |+.+...+..++...|+.++|.++.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 677777888999999999999999888765
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=6.1e-09 Score=101.20 Aligned_cols=389 Identities=14% Similarity=0.111 Sum_probs=260.6
Q ss_pred hCCChHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCCcHHHHH
Q 044628 209 KCGFVEDARRVFDEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF-TFSSLVNSCGTLGSSKLGRQ 284 (665)
Q Consensus 209 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~ 284 (665)
..+++..|+.+|++... +++..|---+..=.++.....|..++++.... .|.+. .|.--+-.=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 34566677777776633 45566666666667777777777777776653 33322 12222233345678888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCC
Q 044628 285 IHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT--AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCP 362 (665)
Q Consensus 285 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 362 (665)
+|+...+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=.++|+...|..+|....+. -.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 88877764 6888888888888888888888888888754 577777777777777788888888888776652 12
Q ss_pred CHHHHHHHHHHh----CCCCchHhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH---hcC-----CC--
Q 044628 363 DEVTLASILSSC----GSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCF---GSV-----KE-- 427 (665)
Q Consensus 363 ~~~t~~~ll~~~----~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~---~~~-----~~-- 427 (665)
|...-..+..++ .+...++.|.-++...++.-... ....|..++..=-+-|+.....++. .++ .+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 222222333333 34566778888888777653222 2445555555444556544433322 222 22
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---hcCCcHHHHHHHHHHHHHhcC
Q 044628 428 -PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-------AFLEVLSAC---SHGGLVSEGLRYFNLMISDYH 496 (665)
Q Consensus 428 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~ 496 (665)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+--+| ....+++.+.++|+..++ -
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 45667777777777788999999999998875 555321 121111122 246788888899988876 3
Q ss_pred CCCChhhHHHHHHHH----HhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 044628 497 ILPDSEHYTCLTDLL----GRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 497 ~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
++-...++.-+--+| .|+.++..|.+++..+ |.-|...++...+..-.+.++++..+.++++.++..|.+..++.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 444555555444443 4788888999988877 88888888888888888888999999999999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeE
Q 044628 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSW 606 (665)
Q Consensus 572 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 606 (665)
-.+.+-...|++|-|+.+|.....+.....|-.-|
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888888888888888888887766544554444
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=7.6e-11 Score=112.76 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=166.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044628 397 AFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473 (665)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 473 (665)
.....+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3355667788899999999999999997753 456788888999999999999999999999863 334567777888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 551 (665)
.+...|++++|.+.++..............+..+...+.+.|++++|.+.+++. ...|+ ...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999873222334567778889999999999999999988 44454 5678888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999887764
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=2.1e-09 Score=102.75 Aligned_cols=284 Identities=11% Similarity=0.034 Sum_probs=171.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044628 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320 (665)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (665)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+.+++.++.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888876665433 3456666677778889999999988888875467777788888888889998888887
Q ss_pred HhccC---CCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCC
Q 044628 321 FDGMT---AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA 397 (665)
Q Consensus 321 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 397 (665)
.++.. .++.........+|.+.|++.+.+.++.+|.+.|+--|...-. -
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 77654 4577788889999999999999999999999988655432110 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|... .+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 11122333333333333333334444444 2445555566666667777777777777777666555522 2223
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLAK 553 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 553 (665)
+.+.++.+.-++..+...+.++..| ..+.+|..+|.+.+.+.+|.+.|+.. ...|+..+|.-+..++.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4555555555555555544322222 33444444444444444444444443 44444444444444444444444444
Q ss_pred HHHHHH
Q 044628 554 WAAEKL 559 (665)
Q Consensus 554 ~~~~~~ 559 (665)
+..++.
T Consensus 382 ~~r~e~ 387 (400)
T COG3071 382 QVRREA 387 (400)
T ss_pred HHHHHH
Confidence 444443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=1e-07 Score=96.25 Aligned_cols=268 Identities=15% Similarity=0.112 Sum_probs=151.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCC----------cccHHHH
Q 044628 66 YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRN----------IVTWNTL 135 (665)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----------~~~~~~l 135 (665)
|...++-....+-++.+..++++-++ .++..-+--|..+++.+++++|.+.+......| -..|+.+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 44444445556666677777777766 344557778888899999999998888775433 2346666
Q ss_pred HHHHHhCCCCc-----hHHHHHhhhCCCCCC--cchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 044628 136 ISGIINCGGNV-----TPYFRRMLLDNVRLD--HITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYG 208 (665)
Q Consensus 136 i~~~~~~~~~~-----~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 208 (665)
-...+++.+.. -.+++.+.. .-+| ...|.+|.+-|.+.|.++.|..++++.++. ..++.-++.+.+.|+
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 66555554433 222222221 1233 235666666667777777777777666654 224444555555555
Q ss_pred hCCChHHHHHHH-h---ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCC-----------CCCCHhhHHHHHHHH
Q 044628 209 KCGFVEDARRVF-D---EVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-----------MKGDYFTFSSLVNSC 273 (665)
Q Consensus 209 ~~g~~~~A~~~~-~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~t~~~ll~~~ 273 (665)
....-.-+.++= . ...+.+...+. -.+.-|+.+...+ -.-+..+|..-+.
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~-------------~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~-- 357 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLE-------------LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK-- 357 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHH-------------HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--
Confidence 433222221111 0 00001111111 2222333332221 0112333333222
Q ss_pred hccCCcHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc-------hhHHHHHHHHH
Q 044628 274 GTLGSSKLGRQIHGLVIKQSFDL------DVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV-------VSWNTMVVGFG 340 (665)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~ 340 (665)
...|+..+-...+.++++.- .| -...|..+.+.|-..|+++.|+.+|++..+-+- .+|..-...=.
T Consensus 358 l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 34456667777777777652 22 224688899999999999999999998876322 34666666666
Q ss_pred cCCChHHHHHHHHHHhh
Q 044628 341 QNGDGREAVKLLRDMLQ 357 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~ 357 (665)
++.+++.|+++.+....
T Consensus 437 rh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATH 453 (835)
T ss_pred hhhhHHHHHHHHHhhhc
Confidence 77888888888777643
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2e-09 Score=99.69 Aligned_cols=311 Identities=14% Similarity=0.096 Sum_probs=168.6
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHH
Q 044628 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL---DVLVATSLVDMYAKNGNIDD 316 (665)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~ 316 (665)
-+.+.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|.++.|.++|+.+.+.---+ -....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3478899999999998742 1233445667777888899999999998888652111 12344556777888888888
Q ss_pred HHHHHhccCCCCc---hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHh
Q 044628 317 ACRVFDGMTAKNV---VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKN 393 (665)
Q Consensus 317 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 393 (665)
|+.+|..+.+.+. .....|+..|.+..+|++|++.-+++.+.|-++..+-..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-------------------------
Confidence 8888888876333 345667888888888888888888777765444332211
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 044628 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA-FLEVL 472 (665)
Q Consensus 394 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 472 (665)
..|--|...+....+.+.|..++ .+..+. .|+.+- =..+.
T Consensus 181 ------qfyCELAq~~~~~~~~d~A~~~l-------------------------------~kAlqa--~~~cvRAsi~lG 221 (389)
T COG2956 181 ------QFYCELAQQALASSDVDRARELL-------------------------------KKALQA--DKKCVRASIILG 221 (389)
T ss_pred ------HHHHHHHHHHhhhhhHHHHHHHH-------------------------------HHHHhh--Cccceehhhhhh
Confidence 01111222233333444444444 444432 222221 11222
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHH
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 551 (665)
+.....|+++.|.+.++.+.+ .+..--.++...|..+|...|+.++...++.++ ...+....-..+...-....-.+.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred HHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHH
Confidence 334444444444444444443 121112333444445555555555555555444 233333333333333333334455
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCccCCceeEEEECCEEEEE
Q 044628 552 AKWAAEKLLELEPSKPVNYALVSNVYA--SERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTF 616 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 616 (665)
|...+.+-+...|.--..|..+..-.. .-|++.+...+++.|....++..|.+---..+=..|.|
T Consensus 301 Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 301 AQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 555555556666653333333322222 33567888888888887777766654433333333433
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.1e-09 Score=103.22 Aligned_cols=261 Identities=11% Similarity=0.019 Sum_probs=187.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV---VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILS 372 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 372 (665)
.+..+.....+-+..++++.+..++++.+.+.|+ ..+..-|..+...|+..+-+.+=.+|++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 3444444445555555666666666655544322 23333444555555554444444444432
Q ss_pred HhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHH
Q 044628 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKES 449 (665)
Q Consensus 373 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 449 (665)
.+....+|-++.--|.-.|+..+|++.|.+... .=...|-.....|+-.|..++|
T Consensus 308 ----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 308 ----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred ----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 233444556666677778999999999988764 3346899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-
Q 044628 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM- 527 (665)
Q Consensus 450 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 527 (665)
+..+...-+. ++-....+.-+.--|.+.+..+.|.++|.+... +-| |+...+-+.-.....+.+.+|..+|+..
T Consensus 366 maaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 366 MAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9999888774 122223344455568889999999999999875 455 5666777777777888999999988876
Q ss_pred -C---CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 528 -P---IEP----RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 528 -~---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+ +.+ -..+|+.|..+|++.+..++|+..+++++.+.|.++.+|..++-+|...|+++.|.+.|.+....
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 1 111 24467888899999999999999999999999999999999999999999999999999887643
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=9.8e-12 Score=85.64 Aligned_cols=50 Identities=26% Similarity=0.594 Sum_probs=47.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044628 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477 (665)
Q Consensus 428 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 477 (665)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=7.2e-12 Score=86.32 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=47.5
Q ss_pred CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 044628 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275 (665)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 275 (665)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=1.6e-09 Score=111.21 Aligned_cols=231 Identities=16% Similarity=0.143 Sum_probs=165.7
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHh-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C-
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKN-----GV-QAF-LSIENALINAYSKCGSIAGALQCFGSVKE--------P- 428 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~- 428 (665)
.|+..+...|...|+++.|..++...++. |. .+. ....+.+...|...+++.+|..+|+++.. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445556666677777776666655443 21 111 22334567788888999888888887752 1
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCH-H-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--C
Q 044628 429 --DLVTWTSIIGAYAFHGLSKESIEVFEKMLS-----HAVRPDS-I-AFLEVLSACSHGGLVSEGLRYFNLMISDYH--I 497 (665)
Q Consensus 429 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 497 (665)
-..+++.|..+|.+.|++++|...+++..+ .|..+.. . -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677777889999999988887777654 2222222 2 466777789999999999999998776443 2
Q ss_pred CCC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 044628 498 LPD----SEHYTCLTDLLGRVGLLVEAYDLLASM---------PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLE-- 561 (665)
Q Consensus 498 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 561 (665)
.++ ..+++.|..+|...|++++|.++++++ ...+. ...++.|..+|...++.+.|.+.|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999987 11222 45677788899999999999988887754
Q ss_pred --cCCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 562 --LEPSK---PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 562 --~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
..|++ ..+|..|+.+|.+.|++++|.++-+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444 45788999999999999999999887763
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-07 Score=90.27 Aligned_cols=366 Identities=11% Similarity=-0.012 Sum_probs=217.6
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHH-HHHHhcCC-chH--------------HHHHHHHHHHCCC-
Q 044628 197 CFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMV-SCYALNCL-GDG--------------AIAVFNLMRLEGM- 259 (665)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~g~-~~~--------------A~~~~~~m~~~g~- 259 (665)
...-...+..|...++-+.|.....+.+..-...-+.|+ .-+-+.|. -.+ |++.+.-..+.++
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 334445566777778888888888887665333333333 33333322 111 2222222222222
Q ss_pred --------------CCCHhhHHHHHHHH--hccCCcHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044628 260 --------------KGDYFTFSSLVNSC--GTLGSSKLGRQIHGLVIK-QSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 260 --------------~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (665)
.|+..+...-+.++ +-.++-..+.+.+-.+.+ .-++.|+.....+.++|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 22222222223332 222333333333333333 2356677788888888888888888888888
Q ss_pred ccCCCCchhHHH---HHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCch
Q 044628 323 GMTAKNVVSWNT---MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399 (665)
Q Consensus 323 ~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 399 (665)
+...-|+.+... ..-.+.+.|+.++...+...+.... +-....|..-+...-...+++.|..+-+..++.+. .++
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccc
Confidence 776544433222 2334556777777777766665431 11111122222223345566666666666555432 222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL-SAC 475 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~ 475 (665)
..+-.-..++...|+.++|.-.|+... .-+..+|..|+..|...|.+.+|.-+-+...+. +..+..+.+.+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 223223345666788888888887655 257788888888888888888888777766654 233444554442 222
Q ss_pred h-cCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHH
Q 044628 476 S-HGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 476 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a 552 (665)
. ....-++|..+++...+ +.|+ ....+.+..++.+.|+.++++.++++. ...||....+.|...+...+.+.+|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 22334778888877765 5565 445566777888888888888888887 6678888888888888888888888
Q ss_pred HHHHHHHHhcCCCCCc
Q 044628 553 KWAAEKLLELEPSKPV 568 (665)
Q Consensus 553 ~~~~~~~~~~~p~~~~ 568 (665)
...|..++.++|++-.
T Consensus 491 m~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHhcCccchH
Confidence 8888888888888643
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=5.3e-08 Score=100.61 Aligned_cols=417 Identities=14% Similarity=0.047 Sum_probs=269.0
Q ss_pred cCCChHHHHHHH----HHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCchH
Q 044628 174 QADDIEVGRRLH----SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDG 246 (665)
Q Consensus 174 ~~~~~~~a~~~~----~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 246 (665)
...+++++.... .++....+.-|..+|..|.-+..++|+++.+.+.|++...- ....|+.+-..|...|.-..
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~ 375 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSK 375 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchH
Confidence 334445544332 33333446678999999999999999999999999987543 45579999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHH-Hh-ccCCcHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc---------
Q 044628 247 AIAVFNLMRLEGMKGDYFTFSSLVNS-CG-TLGSSKLGRQIHGLVIKQ--SF--DLDVLVATSLVDMYAKN--------- 311 (665)
Q Consensus 247 A~~~~~~m~~~g~~p~~~t~~~ll~~-~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~--------- 311 (665)
|+.+++.-....-.|+..+...+... |. +.+.++++..+-..++.. +. ......+..+.-+|...
T Consensus 376 Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 376 AVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH
Confidence 99999887665434655544444433 43 557778887777777762 21 22334455555555432
Q ss_pred --CCHHHHHHHHhccCCC---CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHH
Q 044628 312 --GNIDDACRVFDGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386 (665)
Q Consensus 312 --g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 386 (665)
....++.+.+++..+. |..+---+.--|+..++.+.|++..++....+-.-+...+..+.-.++..+++..|..+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 1234556666665432 22222223344667788999999999998876667777888777788888999999988
Q ss_pred HHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHH--------------------------HhcCC----C-CCh-hHH
Q 044628 387 HAYAIK-NGVQAFLSIENALINAYSKCGSIAGALQC--------------------------FGSVK----E-PDL-VTW 433 (665)
Q Consensus 387 ~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~--------------------------~~~~~----~-~~~-~~~ 433 (665)
.+.... .|......... +..-..-++.++|... +..+. + .+. .++
T Consensus 536 vd~al~E~~~N~~l~~~~--~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGK--IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHhhhhhhhchhh--hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 886543 33211100000 0111113333333322 22221 0 111 122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS--------IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 505 (665)
..+.. .+. -+...+..-.. |...-+.|+. ..+......+...+..++|...+.+..+ ..+-....|.
T Consensus 614 r~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~ 688 (799)
T KOG4162|consen 614 RYLSS-LVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYY 688 (799)
T ss_pred HHHHH-HHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHH
Confidence 22211 111 11111100000 2222223322 1344555678888999999988888865 2333456677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 506 CLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKW--AAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
.....+...|..+||.+.|... .+.|+ +.+..++...+...|+...|.. ++..+++++|.++.+|..||.++.+.|
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 7778889999999999998887 77886 6688888899999998888888 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhCC
Q 044628 582 CWFDVARLRKMMRDNC 597 (665)
Q Consensus 582 ~~~~A~~~~~~m~~~~ 597 (665)
+.++|.+.|+......
T Consensus 769 d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLE 784 (799)
T ss_pred chHHHHHHHHHHHhhc
Confidence 9999999998876543
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.5e-08 Score=94.11 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=182.0
Q ss_pred CCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHhCCCCchHhHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHH
Q 044628 342 NGDGREAVKLLRDMLQGSFCPDE-VTLASILSSCGSLSISCETRQVHAYAIKNG-VQAF--LSIENALINAYSKCGSIAG 417 (665)
Q Consensus 342 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~ 417 (665)
+++.++|.++|-+|.+. .|.. .+-.++-+.+.+.|..|.|+.+|+.+.++- ...+ ....-.|..-|.+.|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45677777777777663 2222 233345555677777788888777766542 2111 2233456778999999999
Q ss_pred HHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCcHHHHHHHHHH
Q 044628 418 ALQCFGSVKEPDL---VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI----AFLEVLSACSHGGLVSEGLRYFNL 490 (665)
Q Consensus 418 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 490 (665)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++.+.+-++..+ -|.-+........+++.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999886333 456668999999999999999999999977666553 466677777778899999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 491 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
..+. -+..+..--.+.+.+...|+++.|.+.++.. ...|+ ..+...|..+|...|+.+++...+.++.+..+. +
T Consensus 206 Alqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~ 282 (389)
T COG2956 206 ALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-A 282 (389)
T ss_pred HHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-c
Confidence 9872 2234555556788999999999999999998 55565 456778889999999999999999999999887 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
..-..+.+.-....-.++|.....+-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 56666666665555556666554433
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=1.1e-08 Score=98.00 Aligned_cols=274 Identities=14% Similarity=0.065 Sum_probs=180.6
Q ss_pred cCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHH
Q 044628 311 NGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387 (665)
Q Consensus 311 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 387 (665)
.|++..|+++..+-.+ .....|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888776543 2334455555566677888888888888776432344444555555567777888887777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----C-------hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 044628 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP----D-------LVTWTSIIGAYAFHGLSKESIEVFEKM 456 (665)
Q Consensus 388 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 456 (665)
..+.+.+ +....+.....+.|.+.|++.....++.++.+. | ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777665 344556677778888888888888888777642 1 235666666555555555555556555
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 044628 457 LSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPR 532 (665)
Q Consensus 457 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 532 (665)
..+ .+-+...-.+++.-+.+.|+.++|.++.++..+ .+..|+. +..-...+-++.+.=++..++. |..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~-- 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED-- 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC--
Confidence 543 355555666667777778888888888777776 3555541 1111223444444444444333 333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
+..+.+|...|.+++.+.+|...++.+++..|+ ...|..++++|.+.|+.++|.++++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 467778888888888888888888888888886 6778888888888888888888887665
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.3e-07 Score=92.59 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=69.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHH
Q 044628 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAY 521 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 521 (665)
.|+...|.+-|+..+.....++.. |.-+..+|....+.++..+.|....+ +.| +..+|.-=..++.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 345555555555555442222221 33334445555555555555555543 222 2333433344444445555555
Q ss_pred HHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 522 DLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 522 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.-|++. .+.|. ...+..+.-+..+.+.++++...|+...+.-|+.+..|...+.++..+++++.|.+.++...+
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 555554 34442 223333333334444555555555555555555555555555555555555555555554443
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.4e-07 Score=91.97 Aligned_cols=423 Identities=14% Similarity=0.091 Sum_probs=247.6
Q ss_pred hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHH--hCCChHHHHHHHhc
Q 044628 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSA--LVDLYG--KCGFVEDARRVFDE 222 (665)
Q Consensus 147 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~~g~~~~A~~~~~~ 222 (665)
.....++...+ +-|...+.+=+-++...+.+++|..+.+ ..+. ..+++. +=.+|| +.+..++|...++.
T Consensus 32 ~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 32 VKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred HHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHcccHHHHHHHHhc
Confidence 44455555444 4456667777777888888888874433 2221 112222 234554 67888999998886
Q ss_pred cCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc--hh
Q 044628 223 VLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG-DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD--VL 299 (665)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~ 299 (665)
....+..+...-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-.. -.+. .+......|+ -.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVPEVPEDSYE 176 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhccCCCcchHH
Confidence 555565566666677888899999999999987765432 11112222221111 0111 1111122221 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC--------CCCc----------hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCC
Q 044628 300 VATSLVDMYAKNGNIDDACRVFDGMT--------AKNV----------VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC 361 (665)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 361 (665)
.+-.....+...|++.+|+++++... +.|. ..--.|.-.+...|+.++|..++...+... .
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~ 255 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-P 255 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-C
Confidence 22223455678899999999998771 1111 112345566778999999999999998875 3
Q ss_pred CCHHHHHHH---HHHhCCCCchHhH--HHHHHH-----------HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044628 362 PDEVTLASI---LSSCGSLSISCET--RQVHAY-----------AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV 425 (665)
Q Consensus 362 p~~~t~~~l---l~~~~~~~~~~~a--~~i~~~-----------~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 425 (665)
+|....... |-+.....++-.+ ...++. .....-...+..-++++.+|. +..+.++++-...
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~l 333 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASL 333 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhC
Confidence 454222221 2222222222221 111111 111111112222245555554 4556777777776
Q ss_pred CCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHH--------HHH
Q 044628 426 KEPD-LVTWTSIIGAYA--FHGLSKESIEVFEKMLSHAVRPDS--IAFLEVLSACSHGGLVSEGLRYFN--------LMI 492 (665)
Q Consensus 426 ~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~ 492 (665)
.... ...+.+++.... +.....+|.+++...-+. .|.. +.....+......|+++.|.+++. .+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 6422 334444444332 223577788888777765 4444 455556667788999999999999 554
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--------PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 493 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
+ .+..| .+...++.++.+.++-+.|.+++.+. ...+. ...|.-+...-.++|+.++|...++++++.+
T Consensus 412 ~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 412 E-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred h-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 4 23334 45566788888888877676666655 22222 2233334444567899999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 564 PSKPVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 564 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
|++..+...++-+|++.. .+.|..+-+.+
T Consensus 489 ~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 489 PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 999999999999998875 56666664433
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=6.9e-09 Score=106.55 Aligned_cols=232 Identities=20% Similarity=0.190 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC----------CCch-hHHHHHHHHHcCCChHHHHHHHHHHhhC---CCCCCH
Q 044628 299 LVATSLVDMYAKNGNIDDACRVFDGMTA----------KNVV-SWNTMVVGFGQNGDGREAVKLLRDMLQG---SFCPDE 364 (665)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 364 (665)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344455555556666655555544322 1111 1234566777778888888888777541 001111
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CChh-HH
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE----------PDLV-TW 433 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~ 433 (665)
. .-..+++.|..+|.+.|++++|...+++..+ +.+. ..
T Consensus 280 ~-------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 P-------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred H-------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 1 1123445566677777777776666554431 3333 35
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----C-CCC-C
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSH---AVRPDS----IAFLEVLSACSHGGLVSEGLRYFNLMISDY----H-ILP-D 500 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~ 500 (665)
+.++..++..+++++|..++++..+. -+.++. .+++.+...+.+.|++++|.++|++++... + ..+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 55677788889999999998876652 123333 378899999999999999999999987642 1 122 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM--------PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
..+++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456788889999999999999988876 34455 45789999999999999999999998873
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=5.6e-09 Score=102.95 Aligned_cols=212 Identities=15% Similarity=-0.012 Sum_probs=152.2
Q ss_pred CchHhHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 044628 378 SISCETRQVHAYAIKNG-VQA--FLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 378 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
+..+.+..-+..++... ..+ ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555666665432 222 235577778889999999999999988763 567899999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--C
Q 044628 452 VFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--P 528 (665)
Q Consensus 452 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 528 (665)
.|++..+. .|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999984 6654 6788888889999999999999999987 3454432222233455678899999999765 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL-------ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 529 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
..|+...| .+ .....|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|+..+++....++
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333222 22 22234544333 2333333 55667778999999999999999999999999886553
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.2e-08 Score=110.07 Aligned_cols=244 Identities=12% Similarity=0.003 Sum_probs=173.3
Q ss_pred ChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHh---------CCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044628 344 DGREAVKLLRDMLQGSFCPDEV-TLASILSSC---------GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413 (665)
Q Consensus 344 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~---------~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 413 (665)
..++|+.+|++..+. .|+.. .+..+..++ ...++.++|...++.+++.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356777778777663 45443 222222211 13345778888888877765 345667777888889999
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHH
Q 044628 414 SIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFN 489 (665)
Q Consensus 414 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 489 (665)
++++|...|++..+ .+...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|++.++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 34667888899999999999999999999986 55542 33334445666899999999999
Q ss_pred HHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 490 LMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDT-LGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 490 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
++.+. ..| +...+..+..+|...|+.++|.+.++++ +..|+... ++.+...+...| +.|...++.+++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 235 3555777888999999999999999998 55665444 444445556666 47888788777644333
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 567 PVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 567 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33334478888889988887777 7777654
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=6.7e-09 Score=99.19 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 507 (665)
....+..+...|...|++++|.+.+++..+. .|+ ...+..+...+...|++++|.+.++...+. .+.+...+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 3567788889999999999999999999875 454 567788888999999999999999999872 33456778888
Q ss_pred HHHHHhcCChHHHHHHHHhC-C--CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 044628 508 TDLLGRVGLLVEAYDLLASM-P--IEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~-~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 583 (665)
...+...|++++|.+.+++. . ..| ....+..+...+...|+.++|...++++++.+|+++..+..++.+|...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998 2 122 3556777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 044628 584 FDVARLRKMMRDN 596 (665)
Q Consensus 584 ~~A~~~~~~m~~~ 596 (665)
++|...+++....
T Consensus 186 ~~A~~~~~~~~~~ 198 (234)
T TIGR02521 186 KDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.7e-09 Score=98.74 Aligned_cols=188 Identities=12% Similarity=0.060 Sum_probs=120.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChhHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKE--PDLVTW-TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 483 (665)
..|.+..+++.|+.+|.+-.+ |-.+|| .-+...+-..++.++|.++|+...+.. ..|......+...|...++++-
T Consensus 264 kvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHH
Confidence 334444444444444444332 222222 223444455556666666666665541 2233344445555555666666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEK 558 (665)
Q Consensus 484 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 558 (665)
|+.+|+++.+ .|+ .+.+.|+.+.-++.-.+++|-++.-|++. .-+|+ ..+|-.|.......||+..|.+.|+.
T Consensus 343 AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 343 ALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 6666666655 343 34555555555555666666666666555 12233 55788888777888999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 559 ~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
++..+|++..+++.|+-+-.+.|+.++|+.++.......
T Consensus 421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999999999999887654
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=8.2e-07 Score=83.55 Aligned_cols=468 Identities=16% Similarity=0.098 Sum_probs=251.5
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHHHHhCCCCchH
Q 044628 72 VSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGIINCGGNVTP 148 (665)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~ 148 (665)
-+...+++..|..+++.-...+-+-...+---+...|.+.|++++|..++..+.+ ++...|--|.-.+.- +.
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-----Lg 105 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-----LG 105 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-----HH
Confidence 3344556666666666555433222222333345566778888888888776543 222223222211110 23
Q ss_pred HHHHhhhCC-CCCCcchHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC
Q 044628 149 YFRRMLLDN-VRLDHITFNS-LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR 226 (665)
Q Consensus 149 ~~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (665)
.+.+....+ -.|+.....- ++...-+.++-++-..+++.+... ..-.-+|..+.-..-.+++|++++.++...
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333332222 1233333333 334445667777777777766543 233334444444445678888888887543
Q ss_pred --CchhHHH-HHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHh--ccCCcHHHHHHHHHHHHhCCCCchhHH
Q 044628 227 --DLVLWNV-MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCG--TLGSSKLGRQIHGLVIKQSFDLDVLVA 301 (665)
Q Consensus 227 --~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~ 301 (665)
+....|. |.-+|.+...++-+.++++-.... -||+ |+..=+.+|. +.=+-..|++-...+.+.+-.. |
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 3444444 334667777777777777776654 3443 3333333332 2212222333333333322111 0
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC
Q 044628 302 TSLVDMYAKN-----GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376 (665)
Q Consensus 302 ~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 376 (665)
..+.-.++. ..-+.|++++-.+.+-=+..--.++--|.++++..+|..+.+++.- ..|-....-.+..+
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--- 327 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--- 327 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH---
Confidence 111222222 1223455554433322222333455567888888888888777542 23433333332222
Q ss_pred CCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHH
Q 044628 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PDLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 377 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
++.+-......+.-|...|+-.-+ .++.--.++.+.+.-..++++.+-
T Consensus 328 ---------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 328 ---------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred ---------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 111111112223334444443321 223344556666666667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHhCCCC
Q 044628 452 VFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLLASMPIE 530 (665)
Q Consensus 452 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (665)
.++....- +..|..--..+.+|.+..|.+.+|.++|-.+.. -.+ .|..+| ..|..+|.+.|+++-|.+++-++...
T Consensus 381 YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~ 457 (557)
T KOG3785|consen 381 YLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP 457 (557)
T ss_pred HHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc
Confidence 77776664 333433334567888889999999999988754 223 234455 45668899999999999999998654
Q ss_pred CChhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCC
Q 044628 531 PRSDTLGAFI-GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVP 602 (665)
Q Consensus 531 p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 602 (665)
.+..+...++ .-|.+.+.+=-|-++|..+-.++|. |..|. |+-..-.-+|+.+.....+..|
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCCCCCCc
Confidence 5566555555 6799999999999999999999986 55443 3333344555555544433334
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=7.1e-09 Score=91.90 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTD 509 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 509 (665)
....|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|.+.|..+.|.+-|+...+ +.| +..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 4555777899999999999999999986 6655 5888888999999999999999999987 445 5778899999
Q ss_pred HHHhcCChHHHHHHHHhC---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 044628 510 LLGRVGLLVEAYDLLASM---PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 585 (665)
-+|..|++++|...|+++ |.-| -..+|..+..+..+.|+.+.|+..+++.++++|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999998 3333 266888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 044628 586 VARLRKMMRDNCD 598 (665)
Q Consensus 586 A~~~~~~m~~~~~ 598 (665)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887664
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.4e-08 Score=109.51 Aligned_cols=211 Identities=11% Similarity=-0.037 Sum_probs=161.9
Q ss_pred CchHhHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCC
Q 044628 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYS---------KCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGL 445 (665)
Q Consensus 378 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 445 (665)
+.++.|...++..++... .+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 345788888888876542 23445555554443 23458899999998764 467788888888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHH
Q 044628 446 SKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 446 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 523 (665)
+++|...|++..+. .|+. ..+..+..++...|++++|+..++++.+ +.|+. ..+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999986 5654 5677888899999999999999999987 45653 2333445567778999999999
Q ss_pred HHhC--CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 524 LASM--PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 524 ~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+++. ...|+ ...+..+..++...|+.++|+..++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22454 4446666677889999999999999998888888888888888888888 4888877776653
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=5e-06 Score=84.50 Aligned_cols=216 Identities=11% Similarity=0.067 Sum_probs=143.7
Q ss_pred CCchHhHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHHhcC
Q 044628 377 LSISCETRQVHAYAIKNG-----VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL-------VTWTSIIGAYAFHG 444 (665)
Q Consensus 377 ~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g 444 (665)
.|+..+-...+.++++.- ...-...|..+.+.|-..|+++.|+.+|++..+-+- ..|-.-...=.++.
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 355566666677666531 112345678889999999999999999999876332 35555556666788
Q ss_pred ChHHHHHHHHHHHHcCCC----------CC-------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 044628 445 LSKESIEVFEKMLSHAVR----------PD-------SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~----------p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 507 (665)
+++.|+++.++...-.-. |- ...|...++.-...|-++....+|+.+..-.-..| ...-..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHH
Confidence 999999998887642111 11 11233344444456788888888888887322233 333334
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-CC-CC-hhHHHHHHHHHHh-c--CCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHH
Q 044628 508 TDLLGRVGLLVEAYDLLASM-P-IE-PR-SDTLGAFIGACKV-H--GSIGLAKWAAEKLLELEPSKP--VNYALVSNVYA 578 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~-~-~~-p~-~~~~~~ll~~~~~-~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~ 578 (665)
.-.+....-++++.+.+++- + ++ |+ ..+|++.+.-+.+ - ...+.|+.+|+++++.-|... ..|...+..--
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44566778899999999987 2 22 33 4579988865533 2 378999999999999887521 23445555555
Q ss_pred hcCCHHHHHHHHHHHh
Q 044628 579 SERCWFDVARLRKMMR 594 (665)
Q Consensus 579 ~~g~~~~A~~~~~~m~ 594 (665)
+-|.-..|..++++..
T Consensus 598 e~GLar~amsiyerat 613 (835)
T KOG2047|consen 598 EHGLARHAMSIYERAT 613 (835)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6688888888888754
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-06 Score=85.62 Aligned_cols=264 Identities=12% Similarity=0.044 Sum_probs=142.7
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCCh
Q 044628 269 LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDG 345 (665)
Q Consensus 269 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 345 (665)
-..-|-..+++.+..++.+.+.+.. ++....+..-|.++.+.|+..+-..+=.++.+ ...++|-++..-|...|+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 3333445555556666665555543 44444444445555555554443333333332 2345566666666666666
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHhCCCCchHhHHHHHHHHHHh--C-CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044628 346 REAVKLLRDMLQGSFCPD-EVTLASILSSCGSLSISCETRQVHAYAIKN--G-VQAFLSIENALINAYSKCGSIAGALQC 421 (665)
Q Consensus 346 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 421 (665)
.+|.+.|.+.... .|. ...|...-.+++..|..|+|...+..+.+. | ..|. .| +.--|.+.++++.|.+.
T Consensus 329 seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 329 SEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHHhccHHHHHHH
Confidence 6666666554332 111 123333444444455555555444433321 1 1111 11 22235566666666666
Q ss_pred HhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---CC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 422 FGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH--AV---RP-DSIAFLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 422 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
|.... ..|+...+-+.-.....+.+.+|..+|+..+.. .+ .+ -..+++.|..+|.+.+.+++|+..|+...
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 66544 245555666655555566677777777666521 00 11 22356666677777777777777777776
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHH
Q 044628 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIG 541 (665)
Q Consensus 493 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 541 (665)
. -.+.+..++.++.-.|...|+++.|.+.|.+. .++||..+-..+++
T Consensus 483 ~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 483 L--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred H--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 5 34456667777777777777777777777766 66676666555554
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=2.2e-06 Score=88.97 Aligned_cols=438 Identities=15% Similarity=0.090 Sum_probs=254.7
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHHHHhCCCCc--hHHHHHhhhCCCCCCc-chHH
Q 044628 93 GLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDH-ITFN 166 (665)
Q Consensus 93 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~--~~~~~~m~~~g~~p~~-~t~~ 166 (665)
.+..+..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|... +.+++.-....-.|+. ..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999987642 33456888888887777765 5555443322222433 3333
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhC--CC--CchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 044628 167 SLLRACV-QADDIEVGRRLHSFILKVG--FG--LNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALN 241 (665)
Q Consensus 167 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 241 (665)
..-+.|. +.+.++++..+-.++++.. .. ..+..|-.+--+|...- ...+. +. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a~~--~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQANL--KS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcCCC--hH------HHH
Confidence 3334444 4466677776666666521 00 11122222222221110 00000 00 011
Q ss_pred CCchHHHHHHHHHHHCC-CCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044628 242 CLGDGAIAVFNLMRLEG-MKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320 (665)
Q Consensus 242 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (665)
....++++.+++..+.+ -.|+...|.++ -++..++++.|.+...+..+.+-..+...|..|.-.+.-.+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 12345666777765542 23443333333 3556677888888888888776567777788777777888888888887
Q ss_pred HhccCCC---CchhHHHHHHHHHcCCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHH--Hh
Q 044628 321 FDGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQG--SFCPDEVTLASILSSCGSLSISCETRQVHAYAI--KN 393 (665)
Q Consensus 321 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~ 393 (665)
.+...+. |-.....-+..-..-++.++|+.....+..- ...+-..+.. .|. ..+....+. ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~---~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGK---LLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhh---hhhhhcccccCcc
Confidence 7665432 1111112222333356667776666555431 0000000000 000 000000000 00
Q ss_pred CCCCchhHHHHHHHHHH---hcCCHHHHHHHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044628 394 GVQAFLSIENALINAYS---KCGSIAGALQCFGSVKEPD------LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464 (665)
Q Consensus 394 g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 464 (665)
.....+.++..+..... +.-..+.....+.....|+ ...|......+.+.+..++|...+.+.... .|-
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPL 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chh
Confidence 00111122222221111 1111111112222222233 345667777888899999999888887764 443
Q ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-ChhHHHH
Q 044628 465 -SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYD--LLASM-PIEP-RSDTLGA 538 (665)
Q Consensus 465 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ 538 (665)
...|......+...|.+++|.+.|..... +.|+ +....++..++.+.|+..-|.+ ++..+ .+.| +...|..
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34565566677888999999999998875 5665 6678899999999998888877 88887 6777 5789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
|...+.+.|+.++|-..|..++++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999988764
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.7e-06 Score=81.90 Aligned_cols=280 Identities=13% Similarity=0.008 Sum_probs=179.9
Q ss_pred CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHH----HHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHH
Q 044628 327 KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT----LASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIE 402 (665)
Q Consensus 327 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 402 (665)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ |..+ +.+.|+.+....+...+....-. +...|
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~-ta~~w 303 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKY-TASHW 303 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhc-chhhh
Confidence 35666777778888888888888888876653 344332 2222 24556666666665555432211 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcC
Q 044628 403 NALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHG 478 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 478 (665)
-.-........+++.|+.+-++..+ .++..+-.-...+.+.|+.++|.-.|+..+.. .| +...|..|+.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhh
Confidence 1112223345667777777666553 34444444455677778888888888887764 55 456788888888888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 044628 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLT-DLLG-RVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKW 554 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 554 (665)
|.+.+|.-.-+...+ -+.-+..+...+. +.+. ..---++|.+++++. .++|+ ......+...|...|..+.++.
T Consensus 382 ~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 888888777666655 2334455444432 2222 122246777888777 67776 4456666677888888888888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHH
Q 044628 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLC 634 (665)
Q Consensus 555 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~ 634 (665)
++++.+...|+ ...++.|++++.....+.+|.+.|..... .+|+.+....-++
T Consensus 460 LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 460 LLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHH
Confidence 88888888886 47778888888888888888888876653 4556666677777
Q ss_pred HHHHHHHhh
Q 044628 635 TVFGLMEEN 643 (665)
Q Consensus 635 ~l~~~~~~~ 643 (665)
.+.+++++.
T Consensus 513 ~lEK~~~~~ 521 (564)
T KOG1174|consen 513 LLEKSDDES 521 (564)
T ss_pred HHHhccCCC
Confidence 888777644
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=4.9e-06 Score=86.90 Aligned_cols=411 Identities=13% Similarity=0.066 Sum_probs=245.4
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCc--h-hHHHHHHHHHhc-----C
Q 044628 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDL--V-LWNVMVSCYALN-----C 242 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~li~~~~~~-----g 242 (665)
.+...|++++|.+.+..-.+. +.............|.+.|+.++|..++..+..+|+ . -|..+..+.... .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 356778999999988765543 333466677778899999999999999999865433 3 444555554222 2
Q ss_pred CchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC-cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 243 LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGS-SKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVF 321 (665)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 321 (665)
..+...++|+++...- |.......+.-.+..... -..+...+...++.|+|+ +++.|-..|......+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 4566788888886643 444333333222222112 234556666777777543 4555666666555544444554
Q ss_pred hccC------------------CCCch--hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHhCCCCch
Q 044628 322 DGMT------------------AKNVV--SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE-VTLASILSSCGSLSIS 380 (665)
Q Consensus 322 ~~~~------------------~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 380 (665)
.... .|... +|..+...|-..|++++|++.+++.+.. .|+. ..|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 4431 12222 3456677888999999999999998885 4664 4566666778899999
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh----------hHHH--HHHHHHHhcCChHH
Q 044628 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDL----------VTWT--SIIGAYAFHGLSKE 448 (665)
Q Consensus 381 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~~~~ 448 (665)
.+|...++.....+ ..|..+-+-.+..+.++|++++|.+++....+++. ..|- ....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999888766 34566666777888999999999999888775441 1343 34677899999999
Q ss_pred HHHHHHHHHHc--CC---CCCHHH----------HHHHHHHHhcCC-------cHHHHHHHHHHHHHhcCCCCCh-----
Q 044628 449 SIEVFEKMLSH--AV---RPDSIA----------FLEVLSACSHGG-------LVSEGLRYFNLMISDYHILPDS----- 501 (665)
Q Consensus 449 A~~~~~~m~~~--g~---~p~~~t----------~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p~~----- 501 (665)
|++-|....+. .+ +-|-.+ |..+++..-+.. -...|++++-.+-.........
T Consensus 324 ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~ 403 (517)
T PF12569_consen 324 ALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEAD 403 (517)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 98887776652 11 223222 223332221111 1123444444443210000000
Q ss_pred ------hhHHHHHHHH---HhcCChHHHHHHHH-----------hC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 044628 502 ------EHYTCLTDLL---GRVGLLVEAYDLLA-----------SM----PIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557 (665)
Q Consensus 502 ------~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 557 (665)
.--..+..-. .+...-+++...-. .. +.+.|......-+. ....=+++|.+.++
T Consensus 404 ~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~ 481 (517)
T PF12569_consen 404 NENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLK 481 (517)
T ss_pred cccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHH
Confidence 0000000000 11111112221110 00 11222222222111 12334688999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 558 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
-+.+..|++..+|..-.++|.+.|++--|.+.+.+
T Consensus 482 pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 482 PLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999988877653
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2e-07 Score=91.98 Aligned_cols=201 Identities=11% Similarity=0.003 Sum_probs=131.7
Q ss_pred HhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHH
Q 044628 373 SCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKES 449 (665)
Q Consensus 373 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 449 (665)
.+...|+.+.|...+...++.. +.+...++.+...|...|++++|...|++..+ .+...|..+...+...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444455555555554444433 23456677888889999999999999988763 3567888888889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH--HHHHHHhC
Q 044628 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE--AYDLLASM 527 (665)
Q Consensus 450 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 527 (665)
++.|++..+. .|+..........+...++.++|.+.|+.... ...|+...+ .++.. ..|+..+ +.+.+.+.
T Consensus 152 ~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~ 224 (296)
T PRK11189 152 QDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAG 224 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhc
Confidence 9999999985 56543222222234556789999999977654 233433222 23333 3455433 33333322
Q ss_pred -C----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcC
Q 044628 528 -P----IEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP-SKPVNYALVSNVYASER 581 (665)
Q Consensus 528 -~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g 581 (665)
. ..| ....|..+...+...|+.++|+..|+++++.+| +...+-..++......+
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 1 112 245788899999999999999999999999997 44455455555544433
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.6e-08 Score=93.84 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC
Q 044628 299 LVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376 (665)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 376 (665)
.--+-+..+|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|..+||..
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~------- 294 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLL------- 294 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhh-------
Confidence 3346788888899999999888887653 6677888888889999999999988887766 3577777642
Q ss_pred CCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 044628 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVF 453 (665)
Q Consensus 377 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 453 (665)
.....+-..++.++|.++++...+ .++....++..+|...++++-|+..|
T Consensus 295 ---------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 295 ---------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ---------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 223344455667777777776653 56666667777888888889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 044628 454 EKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD--SEHYTCLTDLLGRVGLLVEAYDLLASM-PIE 530 (665)
Q Consensus 454 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 530 (665)
+++.+.|+. +...|..+.-+|...+.+|-++.-|++.... --.|+ ..+|-.+.......|++.-|.+.|+-. ...
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 988888854 5667777878888888888888888888762 22243 556777777778888888888888877 333
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 531 P-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 531 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
| ....++.|.-.-.+.|++++|+.+++.+..+.|+-.+
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 4 3667888777777888999999998888888887443
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.5e-05 Score=83.33 Aligned_cols=461 Identities=15% Similarity=0.151 Sum_probs=268.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHcccCC--CCc-----ccHHHHHHHHHhCCCCc-hHHHHHhhhCCCCCCcchHHHHHHHH
Q 044628 101 QNQVLHVYVKCKAFDDMEKLFDEMRV--RNI-----VTWNTLISGIINCGGNV-TPYFRRMLLDNVRLDHITFNSLLRAC 172 (665)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~-----~~~~~li~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (665)
+..+...+.++|-...|++.+..+.. +.+ ..=..++..+.+..-.+ ++.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677888899999999988887751 221 11223344444433333 88899998888888877777766666
Q ss_pred hcCCChHHHHHHHHHHHHh-----------CCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---------------
Q 044628 173 VQADDIEVGRRLHSFILKV-----------GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR--------------- 226 (665)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------- 226 (665)
...--.+.-.++|+..... ++.-|+.+.-..|.+-|+.|++.+.+++.++-..-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 6554455555555554432 24557777778899999999999998887654110
Q ss_pred ----------------CchhH------HHHHHHHHhcCCchHHHHHHHHHHHCCCCC-----------CHhhHHHHHHHH
Q 044628 227 ----------------DLVLW------NVMVSCYALNCLGDGAIAVFNLMRLEGMKG-----------DYFTFSSLVNSC 273 (665)
Q Consensus 227 ----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~t~~~ll~~~ 273 (665)
|.+.| -..|..|++.=++...-.+.-.+.+....- ..+....+..-+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 11111 123445555443333322222222211100 001112233334
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH------------------------------------
Q 044628 274 GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDA------------------------------------ 317 (665)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A------------------------------------ 317 (665)
.+.+++..-...++..+..| ..|..++|+|...|...++-.+-
T Consensus 849 EkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 45555666666666777777 56777788877766644322111
Q ss_pred ----------------HHHHhccC-----------------------------CCCchhHHHHHHHHHcCCChHHHHHHH
Q 044628 318 ----------------CRVFDGMT-----------------------------AKNVVSWNTMVVGFGQNGDGREAVKLL 352 (665)
Q Consensus 318 ----------------~~~~~~~~-----------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~ 352 (665)
+-+.+++. ..|+..-+.-+.++...+-+.+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 00000000 012223333445555566666666666
Q ss_pred HHHhhCCCC--CCHHHHHHHHHH---------------------------hCCCCchHhHHHHHHHHHHhCCCCchhHHH
Q 044628 353 RDMLQGSFC--PDEVTLASILSS---------------------------CGSLSISCETRQVHAYAIKNGVQAFLSIEN 403 (665)
Q Consensus 353 ~~m~~~g~~--p~~~t~~~ll~~---------------------------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 403 (665)
++..-..-. -+...-+.++-. +...+-+++|..+|... ..+....+
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~ 1082 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQ 1082 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHH
Confidence 665432100 000011111100 01111122222222111 11111111
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 044628 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483 (665)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 483 (665)
.||+ ..+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+ .-|+..|..+++.+.+.|.+++
T Consensus 1083 VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHH
Confidence 1211 2234444444444433 456799999999999999999887744 2366789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 484 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
-.+++....++ .-+|.++ +.|+-+|++.+++.|-++++. .|+..-...+..-|...|.++.|+-++..
T Consensus 1152 Lv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----- 1219 (1666)
T KOG0985|consen 1152 LVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN----- 1219 (1666)
T ss_pred HHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----
Confidence 99999888763 5556655 578999999999999888875 37777788888899999999998887763
Q ss_pred CCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 564 PSKPVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 564 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 ---vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ---VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456777777888888877776654444
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.92 E-value=1e-05 Score=82.60 Aligned_cols=415 Identities=13% Similarity=0.008 Sum_probs=211.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCchHHHHH
Q 044628 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAV 250 (665)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 250 (665)
..+++..+.+..+.+++ +.+....+....--.+...|+-++|......-... +.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44555666666555555 22222222222222244456666666666554432 445677666666666777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 044628 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---- 326 (665)
Q Consensus 251 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 326 (665)
|+.....+ +-|...+.-+--.-++.++++..........+.. +.....|..+.-++.-.|+...|..+.+...+
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77666543 1233334333333345555555555544444432 33344555566666666666666666554432
Q ss_pred -CCchhHHH------HHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHhCCCCchHhHHHHHHHHHHhCCCCc
Q 044628 327 -KNVVSWNT------MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA-SILSSCGSLSISCETRQVHAYAIKNGVQAF 398 (665)
Q Consensus 327 -~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 398 (665)
++...+.- ........|..++|++.+..-... ..|...+. +-...+.+.+++++|..++..++... +.+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chh
Confidence 22222211 123344556666666655543321 11222221 11222445566666666666665543 222
Q ss_pred hhHHHHHHHHHHhcCCHHHHH-HHHhcCCC--CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 399 LSIENALINAYSKCGSIAGAL-QCFGSVKE--PDLVTWTSIIGAYAF-HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
...|-.+..++++-.+.-++. .+|....+ |-...-..+--.... ....+..-+.+..+.+.|+.+-...+.++.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy-- 330 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY-- 330 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH--
Confidence 333333344443333333333 44444432 000000000000111 112233344556666677655333333332
Q ss_pred HhcCCcHHH----HHHHHHHHHHhcC----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHhC-CCCCChh-HH
Q 044628 475 CSHGGLVSE----GLRYFNLMISDYH----------ILPDSEHY--TCLTDLLGRVGLLVEAYDLLASM-PIEPRSD-TL 536 (665)
Q Consensus 475 ~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~ 536 (665)
-.-...+- +..+...+.. .| -+|....| -.++..+-+.|+++.|+..++.+ +..|..+ .|
T Consensus 331 -k~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 331 -KDPEKVAFLEKLVTSYQHSLSG-TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred -hchhHhHHHHHHHHHHHhhccc-ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 22111111 1111111111 11 13454444 45677788999999999999988 6666633 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 537 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
..=.+.+...|+++.|-..++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44457788889999999999999999876544444677777889999999999887776653
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.5e-05 Score=82.21 Aligned_cols=475 Identities=12% Similarity=0.123 Sum_probs=269.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCchH
Q 044628 69 ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTP 148 (665)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~ 148 (665)
|..-+-+.+++..-...++..+..|. .++.++|+|...|...++-.+ +.+.+- ..-=+..+.-||..+++.+.
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE--~fLkeN----~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPE--RFLKEN----PYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChH--HhcccC----CcchhhHHhhhhcccCCceE
Confidence 44445566777777777888888885 688999999999988765433 222222 22122334455555544210
Q ss_pred --HHHHhhh----CCCCCCcchHHHHHHHHhcCCChH-----------HHHHHHHHHHHhCCC--CchHHHHHHHHHHHh
Q 044628 149 --YFRRMLL----DNVRLDHITFNSLLRACVQADDIE-----------VGRRLHSFILKVGFG--LNCFVSSALVDLYGK 209 (665)
Q Consensus 149 --~~~~m~~----~g~~p~~~t~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~ 209 (665)
.+++=.. -.+.-....|....+-+.+..|.+ --+++.++.++.+++ .|+.-.+..+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 0000000 001111122222223233333322 224566667766653 356666777888888
Q ss_pred CCChHHHHHHHhccC-CCCch-----hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHH
Q 044628 210 CGFVEDARRVFDEVL-CRDLV-----LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283 (665)
Q Consensus 210 ~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 283 (665)
.+-..+-+++++.+. ++++. .-|.||-.-.+ .+.....+..+++-.-. .|+ +...+...+-+++|.
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAF 1068 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHH
Confidence 888888888888773 33222 23334433333 23445555555543321 122 233344555667777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC
Q 044628 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363 (665)
Q Consensus 284 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 363 (665)
.+|... ..+....+.||+ .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|
T Consensus 1069 ~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dD 1132 (1666)
T KOG0985|consen 1069 AIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DD 1132 (1666)
T ss_pred HHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CC
Confidence 777653 344455555553 346777787777777655 45888888888888888888887543 35
Q ss_pred HHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------------
Q 044628 364 EVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---------------- 427 (665)
Q Consensus 364 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------- 427 (665)
...|.-++..+++.|.+++-...+....+..-+|.+. +.||-+|+|.+++.+-+++...-..
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 6678888888888888888888888777776666554 5788888888888776655432110
Q ss_pred -------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Q 044628 428 -------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500 (665)
Q Consensus 428 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 500 (665)
.++.-|..|...+...|++..|...-++. .+..||..+-.+|...+.+.-|. |.. .++...
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivh 1278 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVH 1278 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEe
Confidence 23444555666666666666665544332 23456777777777665554442 221 122234
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLE-LEPSKPVNYALVSNVY 577 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y 577 (665)
.+-..-++..|...|.++|-+.+++.. +.+.- -..|.-|.-.|.+. +.++-.+.++-... ++ .--+..+.
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN------ipKviRA~ 1351 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN------IPKVIRAA 1351 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc------hHHHHHHH
Confidence 445666777777888888887777766 44332 22344444334333 33333333332221 11 11244555
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 044628 578 ASERCWFDVARLRKMMRD 595 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m~~ 595 (665)
.++.-|.|..=++.+-.+
T Consensus 1352 eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1352 EQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 566667776666655443
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.1e-06 Score=80.84 Aligned_cols=411 Identities=16% Similarity=0.097 Sum_probs=229.5
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCchHH
Q 044628 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGA 247 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 247 (665)
-+...+|+..|..+++.-...+-+-...+-.-+..+|...|++++|...+.-+... +...|-.|..++.-.|.+.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 34455666667666666554432222233333445666777777777777655332 344555566666666677777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 044628 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA- 326 (665)
Q Consensus 248 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 326 (665)
..+-.+..+ +.-.-..++...-+.++-++-...++.+... ..-.-+|..+.-..-.+++|++++.++..
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 665544321 2222333444444556666666665554432 12223344444444567777777777654
Q ss_pred -CCchhHHH-HHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC----CCchH--hHHH----------HHH
Q 044628 327 -KNVVSWNT-MVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS----LSISC--ETRQ----------VHA 388 (665)
Q Consensus 327 -~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~--~a~~----------i~~ 388 (665)
|+....|. |.-+|.+..-++-+.+++.--.+. -||.. +..=+.+|.. .|+.. +-.. ...
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 33333333 334555666666666665554442 23332 2222222211 11110 0011 111
Q ss_pred HHHHhCC------CC-----------chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC------
Q 044628 389 YAIKNGV------QA-----------FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL------ 445 (665)
Q Consensus 389 ~~~~~g~------~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------ 445 (665)
++.++++ +. -+..--.|+--|.+.+++++|..+.+++....+.-|-.-.-.++.+|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 2222111 00 011222355568899999999999998876554444333333444443
Q ss_pred -hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 044628 446 -SKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 446 -~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 523 (665)
..-|.+.|+-.-+++..-|.+ --.++.+++.-...+++.+-+++.+.. +-...|...+ .+..+++..|.+.+|+++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 334555665555555444433 234455555556778899999888877 4444444444 578999999999999999
Q ss_pred HHhC-CCC-CChhHHHHHHH-HHHhcCCHHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 524 LASM-PIE-PRSDTLGAFIG-ACKVHGSIGLAKWAAEKLLELE-PSK-PVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 524 ~~~~-~~~-p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
|-+. +.+ .|..+|.+++. ++.+.+..+.|..+ +++.+ |.+ ......+++.+.+++.+=-|.+.|+.+...++
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9888 222 46777877774 45667788777554 45544 322 23445678889999999999999999987654
Q ss_pred c
Q 044628 599 H 599 (665)
Q Consensus 599 ~ 599 (665)
.
T Consensus 493 ~ 493 (557)
T KOG3785|consen 493 T 493 (557)
T ss_pred C
Confidence 3
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.8e-05 Score=75.93 Aligned_cols=211 Identities=9% Similarity=0.005 Sum_probs=128.9
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHH--HHHHHHhCCCCc-
Q 044628 70 LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNT--LISGIINCGGNV- 146 (665)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~~~~~~~~- 146 (665)
+.-....+.+++|.+....++..+ +-+.....+-+-+....+++++|+.+...-..- .++|. +=.+||.-....
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 345567788999999999888866 566677777777888999999999776654321 12222 356666544333
Q ss_pred ---hHHHHHhhhCCCCCCcc-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCChHHHHHHHh
Q 044628 147 ---TPYFRRMLLDNVRLDHI-TFNSLLRACVQADDIEVGRRLHSFILKVGFGL-NCFVSSALVDLYGKCGFVEDARRVFD 221 (665)
Q Consensus 147 ---~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (665)
+..+. |..++.. +...-...|-+.+++++|..+|..+.+++.+. |...-..++..-. .-.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHH
Confidence 33333 5555443 55555566889999999999999999987442 2222222322211 11121 344
Q ss_pred ccCCCCchhHHHH---HHHHHhcCCchHHHHHHHHHHHCC-------CCCCH------hh-HHHHHHHHhccCCcHHHHH
Q 044628 222 EVLCRDLVLWNVM---VSCYALNCLGDGAIAVFNLMRLEG-------MKGDY------FT-FSSLVNSCGTLGSSKLGRQ 284 (665)
Q Consensus 222 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~t-~~~ll~~~~~~~~~~~a~~ 284 (665)
..+.....+|..+ ...++..|++.+|++++....+.+ -.-+. .+ -..+.-.+-..|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4443333344433 456778999999999998873221 11111 11 1122233456788889999
Q ss_pred HHHHHHHhC
Q 044628 285 IHGLVIKQS 293 (665)
Q Consensus 285 ~~~~~~~~g 293 (665)
++..+++..
T Consensus 246 iy~~~i~~~ 254 (652)
T KOG2376|consen 246 IYVDIIKRN 254 (652)
T ss_pred HHHHHHHhc
Confidence 888888876
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=3.1e-07 Score=89.19 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=116.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cCCc
Q 044628 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS----HGGL 480 (665)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 480 (665)
...+|...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 345677889999999888876 56677777889999999999999999999874 344 34444444432 3347
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH-HHHHHHHH
Q 044628 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSI-GLAKWAAE 557 (665)
Q Consensus 481 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~ 557 (665)
+.+|..+|+++.. ...+++...+.+..+....|++++|.+++++. ...| +..++..++-.+...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8999999999877 45678888899999999999999999998887 4444 466777777777788877 77888999
Q ss_pred HHHhcCCCCC
Q 044628 558 KLLELEPSKP 567 (665)
Q Consensus 558 ~~~~~~p~~~ 567 (665)
++....|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 9998999853
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=0.00013 Score=84.81 Aligned_cols=150 Identities=9% Similarity=-0.105 Sum_probs=66.3
Q ss_pred HHhCCChHHHHHHHhccCCCCchh--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHH
Q 044628 207 YGKCGFVEDARRVFDEVLCRDLVL--WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQ 284 (665)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 284 (665)
|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|+.+++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 455566665555554443332111 111122334456666665655554221111111122222333445566777766
Q ss_pred HHHHHHHhCCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCc----hhHHHHHHHHHcCCChHHH
Q 044628 285 IHGLVIKQSFD------LD--VLVATSLVDMYAKNGNIDDACRVFDGMTA----KNV----VSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 285 ~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A 348 (665)
.+..+...--. +. ......+...+...|++++|...+++..+ .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66655432100 01 11112223344556666666666655322 111 1234444455556666666
Q ss_pred HHHHHHHh
Q 044628 349 VKLLRDML 356 (665)
Q Consensus 349 ~~~~~~m~ 356 (665)
...+++..
T Consensus 511 ~~~~~~al 518 (903)
T PRK04841 511 LAMMQQTE 518 (903)
T ss_pred HHHHHHHH
Confidence 66665554
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=8.9e-05 Score=75.94 Aligned_cols=446 Identities=15% Similarity=0.104 Sum_probs=264.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHHHHhC
Q 044628 66 YSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGIINC 142 (665)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 142 (665)
|..++. |-..+.+..+....+.+++ +.+-...+....--.+...|+-++|......-.. ++.++|..+
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~------- 81 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL------- 81 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH-------
Confidence 344444 4466777888888887777 4444444444333344556888888776554432 233344332
Q ss_pred CCCchHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhc
Q 044628 143 GGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE 222 (665)
Q Consensus 143 ~~~~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (665)
--.+....++++|.+.+..+.+.+ +.|...+.-|--.-++.|+++.....-..
T Consensus 82 --------------------------gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 82 --------------------------GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred --------------------------HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 222334567888888888888765 33667777776667777787776665555
Q ss_pred cC---CCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHhhHHHHHH------HHhccCCcHHHHHHHHHHHHh
Q 044628 223 VL---CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG-MKGDYFTFSSLVN------SCGTLGSSKLGRQIHGLVIKQ 292 (665)
Q Consensus 223 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 292 (665)
.. ......|..+..++--.|+...|..++++..+.. -.|+...|..... .....|..+.|.+.+..-...
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 43 3356789999999999999999999999987764 2456555543322 245667777776665543322
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHHHH-HHHHcCCChHHHH-HHHHHHhhCC---CCCCHH
Q 044628 293 SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMV-VGFGQNGDGREAV-KLLRDMLQGS---FCPDEV 365 (665)
Q Consensus 293 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~ 365 (665)
+......-..-.+.+.+.+++++|..++..+.. ||..-|+... .++.+-.+.-+++ .+|....+.- -.|-..
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 122223334456778899999999999999876 4555555443 3443333334444 5555554321 111111
Q ss_pred HHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhcC--------------CC
Q 044628 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA---G-ALQCFGSV--------------KE 427 (665)
Q Consensus 366 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~-A~~~~~~~--------------~~ 427 (665)
.. +......-.+....++....+.|+++- +..+...|-.....+ + +..+...+ ..
T Consensus 294 pl----svl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 294 PL----SVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cH----HHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 11 111122223344455555666665542 233333332211111 0 11111111 12
Q ss_pred CChhHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH
Q 044628 428 PDLVTWTS--IIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504 (665)
Q Consensus 428 ~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 504 (665)
|....|.. ++..|-..|+++.|...++..+.+ .|..+ -|..=.+.+.+.|++++|..++++..+ --.||...-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHH
Confidence 55556655 566788889999999999998875 77765 455556778899999999999998876 233555444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC---CCC--CC----hhHHHHHH--HHHHhcCCHHHHHHHHHHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASM---PIE--PR----SDTLGAFI--GACKVHGSIGLAKWAAEKL 559 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~---~~~--p~----~~~~~~ll--~~~~~~g~~~~a~~~~~~~ 559 (665)
.--+.-..|+.+.++|.++.... +.. .+ .-.|-.+- .+|.++|++.+|.+-+..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 35566778899999998887665 210 01 22344443 4577777777776544433
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=2.2e-05 Score=80.81 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcC
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS--IAFLEVLSACSHG 478 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~ 478 (665)
.|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|..+..+++.++- .||. .|...+..-+...
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAE 895 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhc
Confidence 3333344455666677777776666666543 55666777777666665543 3333 3555555666666
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCC-C---ChhHHHHHH------HHHHhcCC
Q 044628 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIE-P---RSDTLGAFI------GACKVHGS 548 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p---~~~~~~~ll------~~~~~~g~ 548 (665)
|++..|.+.|-+... |.+-+++|-..+.+++|.++-+.-+-. . -...|..-+ ....++|-
T Consensus 896 g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gl 965 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGL 965 (1636)
T ss_pred cChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhh
Confidence 777777666655432 445566666666666666665544211 0 012232211 12234444
Q ss_pred HHHHHHHH------HHHH-----hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 549 IGLAKWAA------EKLL-----ELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 549 ~~~a~~~~------~~~~-----~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
++.|+... +-++ .....-+.++..++..+...|++++|.+-+-...+.
T Consensus 966 l~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 966 LEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 44443321 1111 112223456777777788888888887666555443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=1.3e-06 Score=77.84 Aligned_cols=162 Identities=15% Similarity=0.070 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcC
Q 044628 403 NALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHG 478 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 478 (665)
..+...|.+.|+.+.|.+.|++.. ..+-...|....-+|..|++++|...|++....-.-|. ..||..+.-+..+.
T Consensus 73 ~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 73 LVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA 152 (250)
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc
Confidence 344445555555555555555443 23444455555555666666666666666655322222 13555555555566
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAA 556 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 556 (665)
|+.+.|.++|++..+ -.+-.......+.+.....|++-.|..+++.. ...++..+....+..-...||.+.+-+.-
T Consensus 153 gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 153 GQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred CCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666666554 11222344555556666666666666666555 22345555545555555666666666665
Q ss_pred HHHHhcCCCC
Q 044628 557 EKLLELEPSK 566 (665)
Q Consensus 557 ~~~~~~~p~~ 566 (665)
.++...-|..
T Consensus 231 ~qL~r~fP~s 240 (250)
T COG3063 231 AQLQRLFPYS 240 (250)
T ss_pred HHHHHhCCCc
Confidence 5555555654
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=3.7e-06 Score=86.34 Aligned_cols=234 Identities=14% Similarity=0.146 Sum_probs=154.1
Q ss_pred HHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044628 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416 (665)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 416 (665)
..+.+.|+++.|+..|-+... ....+.+......+.+|..|.+.+...... ..-|..+.+-|+..|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHH
Confidence 345556677777766655421 223455556667788888888877665432 234556778888888888
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 044628 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496 (665)
Q Consensus 417 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 496 (665)
.|.++|-+.. .++-.|..|.+.|++++|.++-.+.. |.......|..-..-.-..|++.+|.++|-.+..
T Consensus 783 ~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~--- 852 (1636)
T KOG3616|consen 783 IAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--- 852 (1636)
T ss_pred HHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC---
Confidence 8888887653 45556778888888888888766553 2233334555555567778888888887765533
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 497 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
|+. -|.+|-+.|..++.+++.++-.-..-..+-..+..-+...|++..|+..|-++ .-+..-.++
T Consensus 853 --p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnm 917 (1636)
T KOG3616|consen 853 --PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNM 917 (1636)
T ss_pred --chH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHH
Confidence 543 36778888888888888887621222445556666677788888887766543 335667788
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCccCCceeE
Q 044628 577 YASERCWFDVARLRKMMRDNCDHKVPGCSW 606 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 606 (665)
|...+.|++|.++-+.--..+..|...+-|
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 888888888888765444444444444555
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.5e-06 Score=83.37 Aligned_cols=215 Identities=14% Similarity=0.046 Sum_probs=134.8
Q ss_pred HHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----------HHHHHHH
Q 044628 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLV----------TWTSIIG 438 (665)
Q Consensus 369 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~ 438 (665)
.+.++.-+..+++.+.+-+...++.. .++.-++.....|...|.+.++...-+...+..-. ....+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445555666666666555544 44445555666666666666555544443321111 1122334
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCh
Q 044628 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE-HYTCLTDLLGRVGLL 517 (665)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 517 (665)
+|.+.++++.|+..|.+....-..||..+ +....+++....+... -+.|... --..=...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 55666777777777777665433433221 1122333333333222 1333321 111124567788999
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 518 VEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 518 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.+|+..+.++ ...| |...|.....++.+.|++..|..-.+..++++|+....|..=+.++....+|++|.+.+++..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888 4456 5777888888888999999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 044628 596 NC 597 (665)
Q Consensus 596 ~~ 597 (665)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 54
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=3.9e-06 Score=87.70 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGAC 543 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~ 543 (665)
++..+...|.+.|++++|+++.+..+. ..|+ ++.|..-...|-+.|++++|.+.++.+ ...+. -.+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445566777777777777777776 3454 666777777777777777777777776 44443 33333344556
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CCC-------CchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 544 KVHGSIGLAKWAAEKLLELE--PSK-------PVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
.+.|++++|+..+......+ |.. .....-.+.+|.+.|++..|.+.+..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67777777777777665443 211 1122355677888888887777666554
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=1.6e-05 Score=74.85 Aligned_cols=287 Identities=12% Similarity=0.110 Sum_probs=164.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCchhHHHHH---HHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHHhCCCCc
Q 044628 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMV---VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI-LSSCGSLSI 379 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~ 379 (665)
|...+.-.|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.-|.+..+ ++||-..-..- -..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 344445556666666666666655555555443 345555666666665555554 34553321110 112345566
Q ss_pred hHhHHHHHHHHHHhCCCCc--hh------------HHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHh
Q 044628 380 SCETRQVHAYAIKNGVQAF--LS------------IENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAF 442 (665)
Q Consensus 380 ~~~a~~i~~~~~~~g~~~~--~~------------~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 442 (665)
++.|..=|+.+++...... .. .....+..+.-.|+...|......+.+ .|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 6666666666555432110 00 111122334456677777776666553 466666666777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh----hHHHH---HH------
Q 044628 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE----HYTCL---TD------ 509 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---~~------ 509 (665)
.|++..|+.-++..-+.. .-|..++.-+-..+...|+.+.++...++..+ +.||-. +|..| +.
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 777777776666655532 22334555555556667777777766666654 445422 12111 11
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCh--h---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEPRS--D---TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 583 (665)
...+.+++.++++-.+.. ..+|.. + .+..+-.+++..+++.+|++...++++++|+|..++.--+.+|.....+
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 123456666666665554 444441 1 2333345556778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhC
Q 044628 584 FDVARLRKMMRDN 596 (665)
Q Consensus 584 ~~A~~~~~~m~~~ 596 (665)
++|+.-+++..+.
T Consensus 358 D~AI~dye~A~e~ 370 (504)
T KOG0624|consen 358 DDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888777653
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=1.3e-05 Score=82.16 Aligned_cols=295 Identities=12% Similarity=-0.016 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CCchh---HHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHH-HHHH---
Q 044628 300 VATSLVDMYAKNGNIDDACRVFDGMTA---KNVVS---WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV-TLAS--- 369 (665)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~--- 369 (665)
.+..+...+...|+.+.+.+.+....+ ++... .......+...|++++|.+.+++.... .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 344444455555555554444443321 11111 222233455677777777777777654 23332 2221
Q ss_pred HHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCh
Q 044628 370 ILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLS 446 (665)
Q Consensus 370 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 446 (665)
........+..+.+.+.... .....+........+...+...|++++|...+++..+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 11111223444444444433 1111122233444556678888999999998888763 4566778888888899999
Q ss_pred HHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH-H--HHHHHHHhcCChHHH
Q 044628 447 KESIEVFEKMLSHAV-RPDS--IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY-T--CLTDLLGRVGLLVEA 520 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A 520 (665)
++|...+++...... .|+. ..+..+...+...|++++|..+++.........+..... + .++..+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999988877532 1232 235567777888999999999998875421111111111 1 223333344433333
Q ss_pred HHH--H-HhC-CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCCchHHHHHHHHHhcCCHH
Q 044628 521 YDL--L-ASM-PIEPR---SDTLGAFIGACKVHGSIGLAKWAAEKLLELEP---------SKPVNYALVSNVYASERCWF 584 (665)
Q Consensus 521 ~~~--~-~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~y~~~g~~~ 584 (665)
.++ + ... +..|. .........++...|+.+.|...++.+....- .........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 1 111 11111 12223455667788899999999888764221 13455678888899999999
Q ss_pred HHHHHHHHHhhCC
Q 044628 585 DVARLRKMMRDNC 597 (665)
Q Consensus 585 ~A~~~~~~m~~~~ 597 (665)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877543
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3e-07 Score=92.33 Aligned_cols=197 Identities=11% Similarity=0.028 Sum_probs=150.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----C---CHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-----P---DSI 466 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~~~ 466 (665)
+...|--|...-...++-..|+..+.+..+ .|....-.|.-.|...|.-.+|+..+++-+....+ + +..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 344455555556666666667777766653 56667777777888888888899888887654211 0 000
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
.-.. ..+.....+....++|-.+....+..+|.+.+.+|.-+|--.|.+++|++.|+.+ ..+| |...|+-|.....
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 1223334455667777777775666688999999999999999999999999999 7778 5778999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...+.++|+.+|.+++++.|....+...|+-.|...|.++||.+.+-.....
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9899999999999999999999999999999999999999999998766543
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=8.2e-07 Score=81.43 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=114.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 516 (665)
+..|...|+++......+.+. .|. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 345777788777644432222 111 122336777888888888776 345678899999999999999
Q ss_pred hHHHHHHHHhC-CCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 044628 517 LVEAYDLLASM-PIEP-RSDTLGAFIGAC-KVHGS--IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 517 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
+++|.+.|++. ...| +...+..+..+. ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998 6667 466777777664 66676 5999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 044628 592 MMRDNCD 598 (665)
Q Consensus 592 ~m~~~~~ 598 (665)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=1.3e-06 Score=83.65 Aligned_cols=60 Identities=13% Similarity=-0.040 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 538 AFIGACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 538 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|...++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556788899999999999999987765 4688999999999999999999998887543
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=4e-07 Score=88.43 Aligned_cols=149 Identities=14% Similarity=0.043 Sum_probs=114.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH----HHHh
Q 044628 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD----LLGR 513 (665)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~ 513 (665)
..+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+.. .+.-
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhC
Confidence 3456679999999988642 3456667778899999999999999999976 34443 3333333 3333
Q ss_pred cCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH-HHHHHHH
Q 044628 514 VGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW-FDVARLR 590 (665)
Q Consensus 514 ~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~ 590 (665)
.+.+.+|.-+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 35799999999999 44567888888888999999999999999999999999999999999999999998 6677888
Q ss_pred HHHhhC
Q 044628 591 KMMRDN 596 (665)
Q Consensus 591 ~~m~~~ 596 (665)
.+++..
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 888753
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=5.7e-05 Score=80.85 Aligned_cols=173 Identities=13% Similarity=0.030 Sum_probs=127.5
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 416 AGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 416 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
..|...+.+.. ..+..+||.|.-. ...|.+.-|.-.|-+-+... +.+..+|..+.-.|....+++.|.+.|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 45667776554 3788899988665 55577777777776666541 3355788888888999999999999999886
Q ss_pred HhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCChhHHHHHHHHHHhcCCHHHHHH----------
Q 044628 493 SDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-------PIEPRSDTLGAFIGACKVHGSIGLAKW---------- 554 (665)
Q Consensus 493 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~---------- 554 (665)
. +.| +...|..........|+.-++..+|.-- +-.|+...|.+...--...|+.++-+.
T Consensus 878 S---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 S---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred h---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 5 445 6777877777777889888888888762 445666667666655566666554443
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 555 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
+.++.++-.|++..+|...+...-..+.+.+|.++..+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999999999999999888876655
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3.7e-05 Score=71.04 Aligned_cols=417 Identities=12% Similarity=0.051 Sum_probs=239.0
Q ss_pred CCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC--CCchhHHH
Q 044628 156 DNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNV 233 (665)
Q Consensus 156 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 233 (665)
.|+..-.--|.+++..+.+..++..|.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444444557777777788888888888887776653 22555667777888888999999999988743 32222221
Q ss_pred -HHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHH--HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044628 234 -MVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS--CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK 310 (665)
Q Consensus 234 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 310 (665)
-...+-+.+.+.+|+++...|... |+...-..-+.+ .-+.+++..+..+.++....| +..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 235566788899999998888652 222211112222 235567777777776654322 34444445555678
Q ss_pred cCCHHHHHHHHhccCC----CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHhCCCCchHhHHH
Q 044628 311 NGNIDDACRVFDGMTA----KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT-LASILSSCGSLSISCETRQ 385 (665)
Q Consensus 311 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~ 385 (665)
.|++++|.+-|+...+ .....||.-+.. -+.|+++.|+++..++++.|++-.+.. ......+- ....+..-..
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHH
Confidence 8888888888887765 345667755544 456788888888888888776421110 00000000 0000000011
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044628 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460 (665)
Q Consensus 386 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 460 (665)
++... -+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-.= ..+++.+..+-+.-+...
T Consensus 235 lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~- 305 (459)
T KOG4340|consen 235 LHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ- 305 (459)
T ss_pred HHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc-
Confidence 11110 012223334456789999999999999983 5777766553322 234555555555555554
Q ss_pred CCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHH-hcCChHHHHHHHHhCCCCCC--hhH
Q 044628 461 VRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL-PDSEHYTCLTDLLG-RVGLLVEAYDLLASMPIEPR--SDT 535 (665)
Q Consensus 461 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~--~~~ 535 (665)
.| ...||..++-.||+..-++.|-.++-+-.. .-.+ .+...|+ |++++. ..-..++|++-++.....-. ...
T Consensus 306 -nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRk 382 (459)
T KOG4340|consen 306 -NPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRK 382 (459)
T ss_pred -CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44 457999999999999999988887754322 0010 1223333 344443 34567777766655410000 000
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 536 LGAFIGACKVHGS---IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 536 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...-+..-+..++ ...+.+-+++.+++- ..+....+++|.+..++..+++.|+.-.+-
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 0001111111221 122333444555442 234567788999999999999999876543
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=6.5e-07 Score=77.59 Aligned_cols=93 Identities=11% Similarity=-0.166 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|+++.++..++.+|...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334455555666666666666555 3334 34555555566666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhhC
Q 044628 582 CWFDVARLRKMMRDN 596 (665)
Q Consensus 582 ~~~~A~~~~~~m~~~ 596 (665)
++++|+..++.....
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666655543
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=2.1e-05 Score=84.02 Aligned_cols=382 Identities=12% Similarity=0.014 Sum_probs=229.9
Q ss_pred CCCc-hHHHHHHHHHHHhCCChHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHH
Q 044628 193 FGLN-CFVSSALVDLYGKCGFVEDARRVFDEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSS 268 (665)
Q Consensus 193 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 268 (665)
+.++ ...|..|-..|+...+...|.+.|+..-+ .|..++......|++..+++.|..+.-..-+.. +.-...++.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW 565 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENW 565 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhh
Confidence 4444 46788888999988899999999987744 366789999999999999999999833322211 111112222
Q ss_pred --HHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHH---HHHHHHcCC
Q 044628 269 --LVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNT---MVVGFGQNG 343 (665)
Q Consensus 269 --ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g 343 (665)
.--.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 2233566778888888888888765 6688899999999999999999999998877644443322 223456789
Q ss_pred ChHHHHHHHHHHhhC------CCCCCHHHHHHHHHHhCCCCchHhHHHHHH-------HHHHhCCCCchhHHHHHHHHHH
Q 044628 344 DGREAVKLLRDMLQG------SFCPDEVTLASILSSCGSLSISCETRQVHA-------YAIKNGVQAFLSIENALINAYS 410 (665)
Q Consensus 344 ~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~-------~~~~~g~~~~~~~~~~li~~~~ 410 (665)
++.+|+..+...... +..--..++......+...|-...+..+++ -........+...|-.+
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----- 719 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----- 719 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----
Confidence 999999988877542 111111222222222223333333333332 22222222222222222
Q ss_pred hcCCHHHHHHHHhcCCCCChh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----
Q 044628 411 KCGSIAGALQCFGSVKEPDLV--TWTSIIGA-YAFHGLS---K---ESIEVFEKMLSHAVRPDSIAFLEVLSACSH---- 477 (665)
Q Consensus 411 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---- 477 (665)
.+|..+|-... |+.+ .+..++.. .-..+.. + -+.+.+-.-++ ...+..++..++..+.+
T Consensus 720 -----sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 720 -----SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred -----hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 23344444444 3321 11111111 2122221 1 11111111111 11223333333332222
Q ss_pred ---CC-cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHH
Q 044628 478 ---GG-LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 478 ---~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 551 (665)
.+ +...|+..+...++ -...+...|+.|. .+...|.+.-|...|-+. -..| ...+|..+.-.|....|++.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVS--LCANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 22 23467888887776 2233455555554 446667777777766554 3344 57789998888889999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
|..++.++..++|.+...|...+.+-...|+.-++..+|..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999988888888888888988888888876
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.64 E-value=0.00012 Score=69.15 Aligned_cols=329 Identities=16% Similarity=0.074 Sum_probs=203.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHH---HHHhccCCcHHHHHHHHHHHHhCCCCchhHH-HHHHH
Q 044628 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLV---NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVA-TSLVD 306 (665)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~ 306 (665)
---+...+...|++.+|+.-|....+. |...|.++. ..|...|+...|..-+..+++. .||-..- -.-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334566677778888888888777652 334444443 3366667777777777777664 4543221 11233
Q ss_pred HHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHH
Q 044628 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386 (665)
Q Consensus 307 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 386 (665)
.+.|.|.++.|..-|+.+.+.++. +|...+|.+-+.... ........+..+...|+...++..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHH
Confidence 456777777777777766542220 001111111000000 001122233344455666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044628 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSV---KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463 (665)
Q Consensus 387 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 463 (665)
...+++.. +.|...+..-..+|...|++..|..-++.. ...+....--+-..+...|+.+.++...++-++ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 66666543 345666666777888888888887665544 346666666777777888888888888888776 477
Q ss_pred CHHH-H---HHH---------HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHH
Q 044628 464 DSIA-F---LEV---------LSACSHGGLVSEGLRYFNLMISDYHILPD-----SEHYTCLTDLLGRVGLLVEAYDLLA 525 (665)
Q Consensus 464 ~~~t-~---~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 525 (665)
|... | ..| .......+.|.++++-.+...+ ..|. ...+..+-.++...|++.+|++...
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 7632 2 111 1123445777778877777765 2344 2234445566778899999999988
Q ss_pred hC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 526 SM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 526 ~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+|++..+-.- .+.|.++.++..++.-
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccchH
Confidence 87 77786 6677777888998999999999999999999997554332 3556666555554443
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.3e-05 Score=75.44 Aligned_cols=395 Identities=14% Similarity=0.054 Sum_probs=227.3
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC--CCC-chhHHHHHHHHHhcCCchHH
Q 044628 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL--CRD-LVLWNVMVSCYALNCLGDGA 247 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A 247 (665)
+....|+++.|...|-..+... ++|.+.|+.-..+|++.|++++|.+=-.+-. .|+ ...|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4456677777777777777665 3367777777777777777777665443332 222 23677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhcc---CCcHHHHHHHHHHHH----hCCCCchhHHHHHHH----------HHHh
Q 044628 248 IAVFNLMRLEGMKGDYFTFSSLVNSCGTL---GSSKLGRQIHGLVIK----QSFDLDVLVATSLVD----------MYAK 310 (665)
Q Consensus 248 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~----------~~~~ 310 (665)
+.-|.+=++.. +-|...+..+..+.... ++.-..-.++..+.. .+. .....|..++. .|..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~-~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYS-LSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhh-hccHHHHHHHHHhhcCcHhhhcccc
Confidence 77777665532 12344444444444111 000000001110000 000 00001111111 1111
Q ss_pred cCCHHHHHHHHhccC----------------CC------------C----------chhHHHHHHHHHcCCChHHHHHHH
Q 044628 311 NGNIDDACRVFDGMT----------------AK------------N----------VVSWNTMVVGFGQNGDGREAVKLL 352 (665)
Q Consensus 311 ~g~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~ 352 (665)
..++..|.-.+.... +| | ..-.-.+..+.-+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111222222221110 01 0 012345666677777888888888
Q ss_pred HHHhhCCCCCCHHHHHHH-HHHhCCCCchHhHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044628 353 RDMLQGSFCPDEVTLASI-LSSCGSLSISCETRQVHAYAIKNGVQAF------LSIENALINAYSKCGSIAGALQCFGSV 425 (665)
Q Consensus 353 ~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~ 425 (665)
....... ...||... -.++...|........-...++.|...- ......+..+|.+.++++.|...|.+.
T Consensus 248 ~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877643 44444444 3446667766666555555444442210 011122344788889999999999885
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH
Q 044628 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY 504 (665)
Q Consensus 426 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 504 (665)
..+... -....+....++++...+...- +.|+.. -.-.-.+.+.+.|++..|+..|.++++. -+-|...|
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lY 395 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLY 395 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHH
Confidence 531111 1122233445666665555443 344442 2222366788899999999999999983 35578899
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 580 (665)
..-.-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..+.....+++.|.+.|++.++.+|++..+...+..++...
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999887776 45555 334544455666778999999999999999999877777777666653
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.6e-08 Score=60.32 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHHHhCCChHHHHHHHhccC
Q 044628 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL 224 (665)
Q Consensus 192 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 224 (665)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=0.001 Score=70.09 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 548 SIGLAKWAAEKLLELEPSK------PVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 548 ~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
|...++.-.+.+++ +|.. ...|..|+..|....+|..|-+.++.|..+.
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 44444444444443 2332 3567899999999999999999999998553
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=1e-06 Score=76.32 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=100.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 044628 451 EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI 529 (665)
Q Consensus 451 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 529 (665)
.+|++.++. .|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|+..|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455666553 5554 44567778889999999999999886 23346888899999999999999999999998 55
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 530 EP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 530 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
.| +...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 56 577888888899999999999999999999999999999888776543
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=6.2e-05 Score=78.75 Aligned_cols=358 Identities=13% Similarity=0.080 Sum_probs=221.8
Q ss_pred CchHHHHHHH--HHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCH
Q 044628 195 LNCFVSSALV--DLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE-G--------MKGDY 263 (665)
Q Consensus 195 ~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 263 (665)
-|..|..+++ +.|...|++|.|.+-.+-+. +...|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 4677777777 46788899999988877654 3467999999999998888887776666432 1 1122
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CchhHHHHHHHHHcC
Q 044628 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQN 342 (665)
Q Consensus 264 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 342 (665)
.+=.-+.-.....|.+++|+.++.+..+.+ .|=..|-..|.+++|.++-+.-..- =-.||..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222223333457889999999999988754 3556677889999999886543221 113565566666667
Q ss_pred CChHHHHHHHHHHhhC----------C---------CCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHH
Q 044628 343 GDGREAVKLLRDMLQG----------S---------FCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIEN 403 (665)
Q Consensus 343 g~~~~A~~~~~~m~~~----------g---------~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 403 (665)
++.+.|++.|++.... . -.-|...|..--......|+.+.|..+|....+. -
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------F 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------h
Confidence 8888888888764211 1 0123333444444455566777777666655442 3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----
Q 044628 404 ALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG----- 478 (665)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----- 478 (665)
+++...|-.|+.++|.++-++- .|......+.+-|-..|++.+|..+|.+.+. |...|+.|-..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 5556666677788877776653 4666777788888888888888888877653 33333333222
Q ss_pred ----------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-----------CCCC--ChhH
Q 044628 479 ----------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-----------PIEP--RSDT 535 (665)
Q Consensus 479 ----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~p--~~~~ 535 (665)
.+.-.|-++|++.-. -..--+-+|-++|.+.+|+++--+- .+.| |+..
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~---------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGG---------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcch---------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 233344455544321 1122345678888888887763221 1222 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH------H---------------h-cCCCC---------CchHHHHHHHHHhcCCHH
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKL------L---------------E-LEPSK---------PVNYALVSNVYASERCWF 584 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~------~---------------~-~~p~~---------~~~~~~l~~~y~~~g~~~ 584 (665)
.+.-...+..+.++++|..++-.+ + + +.|.. ......+++.+.++|.+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 555455555666777766553222 1 1 11221 235668899999999998
Q ss_pred HHHHHHHHH
Q 044628 585 DVARLRKMM 593 (665)
Q Consensus 585 ~A~~~~~~m 593 (665)
.|.+-|.+.
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 888766543
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=4.5e-06 Score=91.84 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=167.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-H
Q 044628 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKE--------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-I 466 (665)
Q Consensus 396 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 466 (665)
+.+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 34456677777788889999999999998763 23458999999888899889999999999873 344 4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hhHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR---SDTLGAFIGA 542 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 542 (665)
.|..|+.-|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-++|..++.++ ..-|. .....-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688899999999999999999999999655 67788999999999999999999999888 33333 4445555566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 543 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
-.++|+.++|+.+|+.++.-.|.....|..++++-.+.|..+.++.+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999999999999999999999999999999988765
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=8.7e-08 Score=59.05 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=26.8
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 044628 292 QSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325 (665)
Q Consensus 292 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 325 (665)
+|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=0.00014 Score=74.43 Aligned_cols=21 Identities=10% Similarity=-0.124 Sum_probs=13.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 044628 542 ACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~~ 562 (665)
++...|+.+.|.+.+..++++
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 345667777777777666643
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=3.6e-05 Score=71.13 Aligned_cols=304 Identities=14% Similarity=0.052 Sum_probs=157.7
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHH-HHHHHH
Q 044628 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNT-MVVGFG 340 (665)
Q Consensus 264 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 340 (665)
--+.+++..+.+..+++.+.+++..-.+.. +.+......|..+|-...++..|-+.++++.. |...-|.. -...+-
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555556666667777777776666553 34566677777888888888888888887754 32222221 134555
Q ss_pred cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044628 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSS--CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 418 (665)
+.+.+.+|+.+...|... |+...-..-+.+ ..+.+++..++.+.++.-.. .+..+.+.......+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 677888888888877653 222221111211 12334444444444433211 1222223333344566666666
Q ss_pred HHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 044628 419 LQCFGSVKE----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494 (665)
Q Consensus 419 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 494 (665)
.+-|+...+ .....||.-+ +..+.|+++.|++...+.+++|++--+. ++ -|...++..+ +.+
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hcc---
Confidence 666665543 2333444333 3344556666666666666666542111 00 0000000000 000
Q ss_pred cCCCCChhhHHHH-------HHHHHhcCChHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 495 YHILPDSEHYTCL-------TDLLGRVGLLVEAYDLLASMP----IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 495 ~~~~p~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
| .|-..+-+.+ ...+.+.|+++.|.+.+..|| -+.|++|...+.-. -..+++..+.+-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 0001112222 233456677777777777773 23356665554321 23345555666666667777
Q ss_pred CCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 044628 564 PSKPVNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 564 p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
|-.+.++..+.-+|++..-++-|..++-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 7666677777777777777776666654
No 112
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=2.9e-05 Score=76.57 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=128.2
Q ss_pred HHhcC-CHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcH
Q 044628 409 YSKCG-SIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLS--KESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLV 481 (665)
Q Consensus 409 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 481 (665)
+.+.| ++++++..++++.+ ++...|+.....+.+.|+. ++++++++++.+. .| |..+|.....++.+.|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhH
Confidence 33445 46777777776653 5556677665555566653 6778888888875 44 556788888888888889
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc----CC
Q 044628 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV---GLL----VEAYDLLASM-PIEP-RSDTLGAFIGACKVH----GS 548 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~ 548 (665)
+++++.++++++. -..+...|+....++.+. |.. +++++...++ ...| |...|+-+...+... ++
T Consensus 159 ~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999999998872 234556666666555544 323 4667776555 5566 577898888888773 34
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC------------------CHHHHHHHHHHHh
Q 044628 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASER------------------CWFDVARLRKMMR 594 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------------------~~~~A~~~~~~m~ 594 (665)
..+|...+.++++.+|+++.+...|+++|+... ..++|.++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 567889999999999999999999999998743 2356777777663
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.52 E-value=2.7e-06 Score=72.34 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=85.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
+.+..-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556677788999999999999988 5666 5778999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 044628 578 ASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m~~~ 596 (665)
...|+.++|++.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=7.7e-06 Score=82.50 Aligned_cols=216 Identities=17% Similarity=0.178 Sum_probs=159.6
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHH
Q 044628 273 CGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAV 349 (665)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 349 (665)
+.+.|++.+|.-.|+..++.. +.+...|-.|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888888876 66778888888888888888888888877765 35566777778888889888999
Q ss_pred HHHHHHhhCCCC--------CCHHHHHHHHHHhCCCCchHhHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044628 350 KLLRDMLQGSFC--------PDEVTLASILSSCGSLSISCETRQVHAYA-IKNGVQAFLSIENALINAYSKCGSIAGALQ 420 (665)
Q Consensus 350 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 420 (665)
..|+..+....+ ++..+-.. ........+....++|-.+ ...+..+|..++..|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 998887653210 00000000 1112222333444444444 455656888888999999999999999999
Q ss_pred HHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 421 CFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 421 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
.|+.... .|...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-.++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9998763 5778999999999999999999999999998 488875 444566679999999999998877654
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.2e-05 Score=73.48 Aligned_cols=134 Identities=16% Similarity=0.060 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHH
Q 044628 462 RPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAF 539 (665)
Q Consensus 462 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 539 (665)
.|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|+..+++. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45332224555666677777777777666543 23344555666788888888888888888888 445577888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 540 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.-+|.+.|+.+.|+..+.+++++.|+++.++..|+..|.-.|+.++|+.++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888887776544
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=0.00083 Score=78.24 Aligned_cols=326 Identities=10% Similarity=-0.031 Sum_probs=189.9
Q ss_pred HHHhCCChHHHHHHHhccCC----CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCC--C----CCCHh--hHHHHHHHH
Q 044628 206 LYGKCGFVEDARRVFDEVLC----RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG--M----KGDYF--TFSSLVNSC 273 (665)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~ 273 (665)
.....|+++.+...++.++. .+..........+...|++++|...+......- . .+... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456778888888777632 123333344455667899999999998775431 1 11111 112222335
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC--chhHHHHHHHHH
Q 044628 274 GTLGSSKLGRQIHGLVIKQSFDLD----VLVATSLVDMYAKNGNIDDACRVFDGMTA-------KN--VVSWNTMVVGFG 340 (665)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 340 (665)
...|+++.+...++.....--..+ ....+.+...+...|++++|...+++... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678999999999998876421222 13446667778889999999999877642 11 124455566777
Q ss_pred cCCChHHHHHHHHHHhhC----CCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044628 341 QNGDGREAVKLLRDMLQG----SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 416 (665)
..|++++|...+++.... |. ++.. .....+..+...+...|+++
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~-~~~~-------------------------------~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHL-EQLP-------------------------------MHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhcc-cccc-------------------------------HHHHHHHHHHHHHHHhcCHH
Confidence 888888888888776542 11 0000 00111223334445556666
Q ss_pred HHHHHHhcCCC------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhcCCcHH
Q 044628 417 GALQCFGSVKE------P--DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAF-----LEVLSACSHGGLVS 482 (665)
Q Consensus 417 ~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~-----~~ll~a~~~~g~~~ 482 (665)
+|...+.+... + ....+..+...+...|+.++|.+.+++.....-.. ....+ ...+..+...|..+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 66665554421 1 12233445556677788888888777765421111 11111 01123344577888
Q ss_pred HHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hhHHHHHHHHHHhcCCHH
Q 044628 483 EGLRYFNLMISDYHILPDSE----HYTCLTDLLGRVGLLVEAYDLLASM-------PIEPR-SDTLGAFIGACKVHGSIG 550 (665)
Q Consensus 483 ~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~ 550 (665)
.|.+++...... ...... .+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.+
T Consensus 671 ~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 671 AAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 888887665431 111111 1345666778888888888888776 22222 234455557788889999
Q ss_pred HHHHHHHHHHhcCCC
Q 044628 551 LAKWAAEKLLELEPS 565 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~ 565 (665)
+|...+.+++++...
T Consensus 749 ~A~~~L~~Al~la~~ 763 (903)
T PRK04841 749 EAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999887644
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=2.3e-05 Score=71.85 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=116.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 044628 406 INAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGL 485 (665)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 485 (665)
+-+|.+.|+++......+.+..+. ..+...++.++++..+++..+.. ..|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 457888888887765554433221 01223567788888888887752 345567888889999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044628 486 RYFNLMISDYHILPDSEHYTCLTDLL-GRVGL--LVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLL 560 (665)
Q Consensus 486 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 560 (665)
..|++..+ -.+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999987 2233677888888864 67787 59999999998 5666 46678888888999999999999999999
Q ss_pred hcCCCCCchHH
Q 044628 561 ELEPSKPVNYA 571 (665)
Q Consensus 561 ~~~p~~~~~~~ 571 (665)
+++|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988655443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=9.1e-06 Score=84.09 Aligned_cols=187 Identities=18% Similarity=0.134 Sum_probs=110.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044628 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473 (665)
Q Consensus 394 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 473 (665)
+++|--..-..+.+.+.++|-...|..+|++. ..|.-.|-+|+..|+..+|..+..+-.++ +||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555556667788888888888888888875 46777888888888888888888877773 778888888888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHH
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 551 (665)
.......+++|.++++....+ .-..+.....+.++++++.+.++.- .++| ...+|-.+.-+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777777777665442 0011111122234444444444433 3333 23344444444444444444
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
|.+.|...+.++|++...|+.++.+|.+.|+-.+|...+++..+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 44444444444444444444444444444444444444444443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=2.4e-05 Score=85.02 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 507 (665)
++..+-.|.....+.|..++|..+++...+. .||.. ....+...+.+.+.+++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3555555556666666666666666666653 55543 455555566666666666666666654 222234455555
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 508 TDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.+.|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 56666666666666666666 22332 455666666666666666666666666655443
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0039 Score=62.99 Aligned_cols=430 Identities=12% Similarity=0.096 Sum_probs=242.2
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC--CchhHHHHHH
Q 044628 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR--DLVLWNVMVS 236 (665)
Q Consensus 159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 236 (665)
+-|..+|..||+-+... -+++++..++++... ++.....|..-|..-.+..+++..+++|.+...+ ++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45778888888877666 888999999988865 4556778888888888889999999999887544 6777877776
Q ss_pred HHHh-cCCchH----HHHHHHHH-HHCCCCCCHh----hHHHHHHHHhccC------CcHHHHHHHHHHHHhCCCCchhH
Q 044628 237 CYAL-NCLGDG----AIAVFNLM-RLEGMKGDYF----TFSSLVNSCGTLG------SSKLGRQIHGLVIKQSFDLDVLV 300 (665)
Q Consensus 237 ~~~~-~g~~~~----A~~~~~~m-~~~g~~p~~~----t~~~ll~~~~~~~------~~~~a~~~~~~~~~~g~~~~~~~ 300 (665)
---+ +|+... ..+.|+-. .+.|+.+-+. -|...+..--..| +++...+++..++..-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4332 233332 22233332 3335443322 2333333322333 44455556666554432222233
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHhccCC------CCch---------------hHHHHHHHHHcCCCh-
Q 044628 301 ATSLVDMY-------------AKNGNIDDACRVFDGMTA------KNVV---------------SWNTMVVGFGQNGDG- 345 (665)
Q Consensus 301 ~~~li~~~-------------~~~g~~~~A~~~~~~~~~------~~~~---------------~~~~li~~~~~~g~~- 345 (665)
|+-....= -+...+..|+++++++.. ++.. .|-.+|.-=..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 33221100 011233444444444321 1111 133333221111100
Q ss_pred -------HHHHHHHHH-HhhCCCCCCHHH-HHHHHHH----hCCCCc-------hHhHHHHHHHHHHhCCCCchhHHHHH
Q 044628 346 -------REAVKLLRD-MLQGSFCPDEVT-LASILSS----CGSLSI-------SCETRQVHAYAIKNGVQAFLSIENAL 405 (665)
Q Consensus 346 -------~~A~~~~~~-m~~~g~~p~~~t-~~~ll~~----~~~~~~-------~~~a~~i~~~~~~~g~~~~~~~~~~l 405 (665)
....-.+++ |.-.+..|+..- +...+.. +...|+ -+++..+++..+..-...+..+|.++
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111 111122232211 1111111 122232 34444555544443333344444433
Q ss_pred HHHHHhcC---CHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 044628 406 INAYSKCG---SIAGALQCFGSVKE----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSH 477 (665)
Q Consensus 406 i~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 477 (665)
.+-=-..- ..+.....+++... .-..+|-..++.-.+..-...|..+|.+.++.+..+ +.....+++..+|.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 32211111 13333444444432 233467777777777777899999999999998888 55677777776654
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHH
Q 044628 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPR--SDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a 552 (665)
++.+-|.++|+.-.+.+| -+...-.+.++-+.+.++-..|..+|++. .+.|| ..+|..+|..-..-|+....
T Consensus 415 -kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 788999999999888543 34455578899999999999999999998 24454 56899999999999999999
Q ss_pred HHHHHHHHhcCCCC----CchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 553 KWAAEKLLELEPSK----PVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 553 ~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
.++-++....-|.+ ...-..+.+.|.=.+.+..-..-++.+
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 99988887665522 123346667777777665544444433
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=3e-05 Score=74.12 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKE--PD-L---VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI----AF 468 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 468 (665)
...+-.+...|.+.|++++|...|+++.+ |+ . ..|..+..+|...|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 33445566677777888888888876653 22 1 35666777778888888888888888774 33221 34
Q ss_pred HHHHHHHhcC--------CcHHHHHHHHHHHHHhcCCCCChh-h-----------------HHHHHHHHHhcCChHHHHH
Q 044628 469 LEVLSACSHG--------GLVSEGLRYFNLMISDYHILPDSE-H-----------------YTCLTDLLGRVGLLVEAYD 522 (665)
Q Consensus 469 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~-----------------~~~l~~~~~~~g~~~~A~~ 522 (665)
..+..++... |+.++|.+.|+.+.+. .|+.. . ...+.+.|.+.|++++|+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3444444433 6777888888887763 23321 1 1245677889999999999
Q ss_pred HHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044628 523 LLASM----PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564 (665)
Q Consensus 523 ~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 564 (665)
.+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99888 3233 256888999999999999999999888876655
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=5.1e-05 Score=69.43 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 513 (665)
..+-..+...|+.+....+..+.... ..-|.......+....+.|++.+|...|++... .-++|.+.|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666667777766666554432 122333444566667777777777777777765 456677777777777777
Q ss_pred cCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 044628 514 VGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 514 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
.|+.++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++.......+.+..+-..|+-+....|++++|+.+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777777666 4444 355667777777777777777777777777777677777777777777777777776643
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=9e-06 Score=70.05 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=80.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777788888888888888887 4445 4667777778888889999999999999999999889999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 044628 578 ASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m~~~~ 597 (665)
...|++++|.+.++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999988777643
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=7.5e-05 Score=74.26 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=54.6
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKW 554 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 554 (665)
..|..++|+..++.+.+ ..+-|...+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|++
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 33455555555555444 22223333344445555555555555555554 33443 3344444455555555555555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 044628 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 555 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
+++....-+|+++..|..|+.+|...|+-.+|...+.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 5555555555555555555555555544444444443
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00015 Score=75.40 Aligned_cols=216 Identities=13% Similarity=0.130 Sum_probs=175.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044628 294 FDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373 (665)
Q Consensus 294 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 373 (665)
++|--..-..+...+.++|-...|..+|+++ ..|...|..|+..|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556677888999999999999999987 5688999999999999999999888777 47899999888888
Q ss_pred hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHH
Q 044628 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESI 450 (665)
Q Consensus 374 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 450 (665)
..+..-+++|.++.++.... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888888888888765432 111122223347899999999986543 45678888888889999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 451 EVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 451 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
+.|..-... .||. ..|+.+-.++.+.|+-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998874 7877 4799999999999999999999999988 55 556677888888889999999999999888
No 126
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=4.5e-05 Score=75.27 Aligned_cols=189 Identities=8% Similarity=0.036 Sum_probs=139.8
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCc
Q 044628 406 INAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHG-LSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGL 480 (665)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 480 (665)
-..+.+.+..++|..+..++.+ .+...|+.....+...| +.++++..++++.+. .|+. .+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 3345566788888888887764 34557777666777777 579999999999986 4433 456655444555565
Q ss_pred --HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CC----H
Q 044628 481 --VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVH---GS----I 549 (665)
Q Consensus 481 --~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~ 549 (665)
.++++.+++.+.+ .-+-+...|+....++.+.|++++|++.++++ ...| +...|+......... |. .
T Consensus 122 ~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3678889988887 23346788888889999999999999999998 4445 577888776665544 22 3
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCHHHHHHHHHHHhhCCC
Q 044628 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASE----RCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~m~~~~~ 598 (665)
+.......++++++|+|..+|..++.+|... ++..+|.+........++
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 5677888899999999999999999999883 455678888777655443
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.7e-05 Score=79.63 Aligned_cols=123 Identities=18% Similarity=0.081 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
...+++..+...+++++|+++|+++.+. .|+ ....++..+...++-.+|++++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666777788889999999988772 244 4556788888888888999988887 3344 5556666667788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
..++.+.|..++++++++.|++...|..|+.+|.+.|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00013 Score=79.51 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=112.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 044628 395 VQAFLSIENALINAYSKCGSIAGALQCFGSVKE--P-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLE 470 (665)
Q Consensus 395 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 470 (665)
...+...+-.|.+.....|..++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 455677788888888999999999999998874 4 4567777888999999999999999999885 67665 4556
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHH
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFI 540 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 540 (665)
+..++.+.|.+++|.++|+++.. ..+-+...+..+..++-..|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66778889999999999999986 23334778888899999999999999999988 3344555555544
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.23 E-value=0.00027 Score=78.56 Aligned_cols=219 Identities=15% Similarity=0.159 Sum_probs=172.4
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHhC-CC---CchHHHHHHHHHHHhCCChHHHHHHHhccCCC-C-chhHHHHH
Q 044628 162 HITFNSLLRACVQADDIEVGRRLHSFILKVG-FG---LNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-D-LVLWNVMV 235 (665)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li 235 (665)
...|-.-|......+++++|+++.+++++.= +. --.-+|.+++++-...|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4567777888889999999999999998751 11 12457888888888889889999999998664 3 35788999
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCC
Q 044628 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDL--DVLVATSLVDMYAKNGN 313 (665)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~ 313 (665)
..|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.- +. .+....-.+.+-.++|+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999876 23466778888889999999999999999988763 33 45566667778899999
Q ss_pred HHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHhCCCCchHh
Q 044628 314 IDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEV--TLASILSSCGSLSISCE 382 (665)
Q Consensus 314 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~ 382 (665)
.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...|..=.+.|+-+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 9999999998864 356789999999999999999999999999988877643 34444443333344333
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0011 Score=60.85 Aligned_cols=225 Identities=12% Similarity=-0.008 Sum_probs=117.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhH-HHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET-RQVHAYAIKNGVQAFLSIENALINAY 409 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~~ 409 (665)
.-.-|-++|...|.+...+.- .. .|-.|....+..+-......++.+.- ..+.+.+.......+......-...|
T Consensus 43 ~d~y~~raylAlg~~~~~~~e---I~-~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVISE---IK-EGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHHHcccccccccc---cc-cccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 333455666666655433221 11 12233444443333333333333322 23334444443333333333334457
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cCCcHHHHH
Q 044628 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS----HGGLVSEGL 485 (665)
Q Consensus 410 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~ 485 (665)
.+.|++++|.+....... ....-.=...+.+..+.+-|.+.+++|.+- -+..|.+-|.+++. ..+.+.+|.
T Consensus 119 ~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 777888888777777432 222222233445566677777777777752 24456655555543 234566777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 044628 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHG-SIGLAKWAAEKLLEL 562 (665)
Q Consensus 486 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~ 562 (665)
-+|++|.. ...|+..+.+.+..+....|++++|..+++.. .-..++.+...++-.....| +.+.-.+...++...
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 77777765 35566666666666666666777776666666 22224445555554444444 334445556666666
Q ss_pred CCCC
Q 044628 563 EPSK 566 (665)
Q Consensus 563 ~p~~ 566 (665)
.|..
T Consensus 272 ~p~h 275 (299)
T KOG3081|consen 272 HPEH 275 (299)
T ss_pred CCcc
Confidence 6654
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00024 Score=70.79 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV-LSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTD 509 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 509 (665)
.+--..-.+...|+.++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3334444566778999999999999886 7777666555 5578899999999999999987 4566 556678889
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 044628 510 LLGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 587 (665)
+|.+.|++.+|+..+++. ..+-|+..|..|..+|...|+..++.. ..+..|+..|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 999999999999999988 444478899999999999999776654 4566788899999999
Q ss_pred HHHHHHhhCC
Q 044628 588 RLRKMMRDNC 597 (665)
Q Consensus 588 ~~~~~m~~~~ 597 (665)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887764
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=2.8e-06 Score=53.23 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 044628 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDY 263 (665)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 263 (665)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.7e-06 Score=52.71 Aligned_cols=35 Identities=31% Similarity=0.639 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS 465 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 465 (665)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00061 Score=75.11 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
+.-+-..|...++++.+..+++.+++.+|.|..+..-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334445555556666666666666666666555555555554
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00014 Score=70.63 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=112.9
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhh------
Q 044628 431 VTWTSI-IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH------ 503 (665)
Q Consensus 431 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------ 503 (665)
.+|..+ ..++...|++++|.+.--..++.. ..+......-..++...++.+.|...|++.++ +.|+-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASM 244 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhh
Confidence 444444 234566788888877766666542 11222222222234456777888888877764 3444221
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 044628 504 -------YTCLTDLLGRVGLLVEAYDLLASM-PIEPR-----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570 (665)
Q Consensus 504 -------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 570 (665)
+..=.+-..+.|++.+|.+.+.+. .+.|+ +..|........+.|+.++|+...+.+++++|....+|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 111223457889999999999988 55554 44455555667789999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 571 ALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 571 ~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..-+++|...++|++|.+-+++....
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999888654
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=0.0001 Score=63.44 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=87.7
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 044628 452 VFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI 529 (665)
Q Consensus 452 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 529 (665)
.+++.... .|+. .....+...+...|++++|.+.|+.+... .+.+...|..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 5544 34566667788889999999999988762 3446778888889999999999999988887 44
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 530 EP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 530 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 55 4667777788889999999999999999999998755
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00073 Score=61.50 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=120.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH--H-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTS--I-IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 478 (665)
|..++-+..-+|+.+.|..+++.+...=+.++.. | ..-+-..|++++|+++++...+.+ +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3444445566788888888888765311111111 1 123456789999999999999875 44667777666666677
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC---CHHHHH
Q 044628 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHG---SIGLAK 553 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~ 553 (665)
|..-+|++-+....+ .+..|.+.|.-+.+.|...|+++.|.-.++++ -+.| ++..+..+.......| +.+.++
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 887899888888887 57789999999999999999999999999998 4556 4555566665544443 788999
Q ss_pred HHHHHHHhcCCCCCchH
Q 044628 554 WAAEKLLELEPSKPVNY 570 (665)
Q Consensus 554 ~~~~~~~~~~p~~~~~~ 570 (665)
+.+.++++++|.+...+
T Consensus 212 kyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHhChHhHHHH
Confidence 99999999999654443
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00013 Score=73.35 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCc
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGL 480 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 480 (665)
..+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..+. .| |...+..-...|.+.++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3456667777889999999999998777777777888888889999999999999875 44 44455555566889999
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 044628 481 VSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP 531 (665)
Q Consensus 481 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 531 (665)
.+.|+++.+++.. ..| +-.+|..|+.+|.+.|++++|+-.++.+|..|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999987 455 46699999999999999999999999997554
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00015 Score=63.20 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHH
Q 044628 478 GGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRS----DTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 551 (665)
.++...+.+.++.+.++++-.| .....-.+...+...|++++|.+.|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666777777777766432221 1223334456667777777777777776 222332 234445566777788888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 552 AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
|...++.. .-.+-.+..+..+|++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 87777653 22333456677788888888888888887765
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=8.5e-06 Score=50.60 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 044628 228 LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKG 261 (665)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 261 (665)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999988887
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=50.01 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 463 (665)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=7.8e-05 Score=59.14 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 580 (665)
.+..+...+.+.|++++|.+.+++. ...|+ ...+..+...+...|+++.|...++++++..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556677788889999999988887 44443 466777778888889999999999999999999888889999999999
Q ss_pred CCHHHHHHHHHHHhhC
Q 044628 581 RCWFDVARLRKMMRDN 596 (665)
Q Consensus 581 g~~~~A~~~~~~m~~~ 596 (665)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999998877643
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=2.8e-05 Score=72.49 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHh
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLAS 526 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 526 (665)
+...+-++++..| .-..+.+++++|+..|..+++ +.| |...|..=..+|.+.|.++.|++-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555556666654 457788999999999999987 555 566677778899999999999998888
Q ss_pred C-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 527 M-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 527 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
. .+.|. ..+|..|..++...|++++|++.|+++++++|++......|..+--+.+
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 7 77775 6689999999999999999999999999999998765555544433333
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.0055 Score=67.86 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHG 444 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 444 (665)
..+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 355566666677777777777777777766 55677778888888888 888888777664 33467777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 044628 445 LSKESIEVFEKMLSHAVRPDSIA-FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 523 (665)
++.++.++|.++... .|+... |..+++ .+....+..--+.++-.+...|-...++++++++
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 888888888888875 444332 222222 2222222223344555566667777778888888
Q ss_pred HHhC-CCCC-ChhHHHHHHHHHH
Q 044628 524 LASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 524 ~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
++.+ ...| |.....-++..|+
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 8877 4444 3444445555544
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=1.1e-05 Score=62.65 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=53.8
Q ss_pred cCChHHHHHHHHhC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHH
Q 044628 514 VGLLVEAYDLLASM----PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589 (665)
Q Consensus 514 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 589 (665)
.|++++|+.+++++ +..|+...|..+..++...|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777666 2222445566677777788888888888877 667776666677778888888888888887
Q ss_pred HHH
Q 044628 590 RKM 592 (665)
Q Consensus 590 ~~~ 592 (665)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00014 Score=68.01 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=82.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhc
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRV 514 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 514 (665)
.+-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..++ +.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 34567889999999999999985 55 556777778899999999999998888876 5564 67899999999999
Q ss_pred CChHHHHHHHHhC-CCCCChhHHHHHHH
Q 044628 515 GLLVEAYDLLASM-PIEPRSDTLGAFIG 541 (665)
Q Consensus 515 g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 541 (665)
|++++|++.|++. .+.|+..+|..=|.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999998 88998777665443
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00012 Score=74.14 Aligned_cols=102 Identities=17% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHH
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIG 550 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 550 (665)
..+...|++++|++.|+++++. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556677777777666651 2224555666666666666666666666666 4444 3445555666666666666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 551 LAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
+|+..++++++++|+++.....+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666665555544333
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.89 E-value=3e-05 Score=57.57 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER-CWFDVARLRKMMRD 595 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 595 (665)
++.+|..+...+...|++++|+..++++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999988764
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00017 Score=60.39 Aligned_cols=92 Identities=11% Similarity=-0.033 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSNV 576 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 576 (665)
..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++.+++..|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444445555555555555444 21222 1233334445555555555555555555555443 2344555555
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 044628 577 YASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~~ 596 (665)
|.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 150
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.005 Score=56.67 Aligned_cols=147 Identities=13% Similarity=0.027 Sum_probs=98.1
Q ss_pred HHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCCh
Q 044628 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAF----HGLS 446 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~ 446 (665)
..|...++++.|........ +......=+..+.|..+++-|.+.+++|.+ .+..+.+.|..++.+ .+..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 34555566666555443311 111112224456677788888888888886 344566666666654 3567
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH-HHHH
Q 044628 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY-DLLA 525 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~ 525 (665)
.+|.-+|++|-++ ..|+..+.+....+|...|++++|..+++....+ -..+.++...++-+-.-.|...++. +.+.
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 8899999999875 5888889999999999999999999999988873 3445667777776666677665544 3344
Q ss_pred hC
Q 044628 526 SM 527 (665)
Q Consensus 526 ~~ 527 (665)
+.
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 44
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0015 Score=59.61 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV-LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 510 (665)
.|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.+++|+++++...++ -+.|...|---+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3445566677889999999999999887 2 655322222 11245578999999999999984 34466677766777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---CHHH
Q 044628 511 LGRVGLLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER---CWFD 585 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---~~~~ 585 (665)
+-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.+++++=++|.++..+..+++++.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888998887776 566799999999999999999999999999999999999999999999987666 5556
Q ss_pred HHHHHHHHhhCCC
Q 044628 586 VARLRKMMRDNCD 598 (665)
Q Consensus 586 A~~~~~~m~~~~~ 598 (665)
|++.+.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7777777766544
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00096 Score=58.02 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS----IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD--SEHYT 505 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 505 (665)
.|..++..+ ..++...+.+.++.+.+. .|+. .....+...+...|++++|...|+.+... .-.|. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344445554 467778888888888875 3333 23334456677788888888888888773 22222 22344
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044628 506 CLTDLLGRVGLLVEAYDLLASMPIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLL 560 (665)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 560 (665)
.|..++...|++++|+..++..+..+ ....+......+...|+.++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 56777888888888888887763222 34456666677888888888888887753
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00019 Score=67.49 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=89.8
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 044628 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVH---GSIGLAKWAAEKLLELEPSKPVNYAL 572 (665)
Q Consensus 498 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 572 (665)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| ++..+..+..++... ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999988 5555 466677776665443 25688999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccCCc
Q 044628 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPG 603 (665)
Q Consensus 573 l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 603 (665)
|+-.+...|++.+|...|+.|.+......|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999877654443
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.81 E-value=0.052 Score=55.21 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccC--CCCcccHHHHHHHH
Q 044628 62 AHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR--VRNIVTWNTLISGI 139 (665)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~ 139 (665)
|...|..|++-+... ..++++..++++... ++.++..|..-|..-.+..+++...++|.+-. .-++..|.+-|+-.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 566788888877665 788888888888763 46677788888888888899999999988643 34566777777644
Q ss_pred H
Q 044628 140 I 140 (665)
Q Consensus 140 ~ 140 (665)
-
T Consensus 97 R 97 (656)
T KOG1914|consen 97 R 97 (656)
T ss_pred H
Confidence 3
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=5.3e-05 Score=55.40 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788899999999999999999988999999999999999999999888886543
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00034 Score=58.48 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFI 540 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 540 (665)
++..+...+...|++++|.+.|+.+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777777765321111 1334555677777777777777777776 32333 34566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNY 570 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 570 (665)
.++...|+.+.|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777888888888888888888888865543
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.4e-05 Score=47.32 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 044628 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGM 259 (665)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 259 (665)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.1e-05 Score=46.79 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhCCC
Q 044628 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSF 360 (665)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 360 (665)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.0003 Score=63.29 Aligned_cols=82 Identities=18% Similarity=0.063 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556666667777777777777666 22222 3467777778888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 044628 576 VYASERC 582 (665)
Q Consensus 576 ~y~~~g~ 582 (665)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 160
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.74 E-value=1.8e-05 Score=64.78 Aligned_cols=51 Identities=45% Similarity=0.743 Sum_probs=39.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh-ccCCc-ccc--cCcc--------chhcccCCCC
Q 044628 603 GCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN-NVSGH-CNV--LDKE--------MDECTLWLPG 665 (665)
Q Consensus 603 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~-~~~--~~~~--------~~~~~~~~hs 665 (665)
|+||+++ |.|++||.+||+. ++..+++.. |.|++ .++ ++++ +++..+++||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HS 64 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHS 64 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccH
Confidence 7999876 9999999999998 455566666 88888 655 4444 4477999997
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0003 Score=63.05 Aligned_cols=94 Identities=14% Similarity=-0.105 Sum_probs=75.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 574 (665)
....|..++..+...|++++|+..|++. .+.|+ ..+|..+...+...|+.++|+..++++++++|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788889999999988887 33333 347888888999999999999999999999999988888889
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 044628 575 NVYA-------SERCWFDVARLRKMM 593 (665)
Q Consensus 575 ~~y~-------~~g~~~~A~~~~~~m 593 (665)
.+|. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666666544
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00049 Score=69.63 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=84.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHh
Q 044628 436 IIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGR 513 (665)
Q Consensus 436 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 513 (665)
....+...|++++|++.|++.++. .| +...+..+..++...|++++|+..++.++. +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999986 55 456788888899999999999999999987 344 57788889999999
Q ss_pred cCChHHHHHHHHhC-CCCCChhHHHHHHHHH
Q 044628 514 VGLLVEAYDLLASM-PIEPRSDTLGAFIGAC 543 (665)
Q Consensus 514 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 543 (665)
.|++++|+..|++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998 6677766555555444
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.075 Score=52.53 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=67.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHH
Q 044628 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484 (665)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 484 (665)
-|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|-..+.+|...|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455667777777777777667777777777777777777766654322 11235566667777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 485 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
..+...+. +..-+.+|.++|++.+|.+.-.+.
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 76665521 234466777777777776664443
No 164
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.65 E-value=0.07 Score=52.05 Aligned_cols=241 Identities=18% Similarity=0.179 Sum_probs=156.5
Q ss_pred cCCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044628 341 QNGDGREAVKLLRDMLQGSFCPDE--VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA 418 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 418 (665)
-.|+++.|.+-|+.|... |.. .-+..|.-..-+.|+.+.+++.-...-..- +.-.....+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 356777777777777642 221 223333334456666666666655544332 12234456778888888888888
Q ss_pred HHHHhcCC-----CCChhH--HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCcHHHHHHH
Q 044628 419 LQCFGSVK-----EPDLVT--WTSIIGAYA---FHGLSKESIEVFEKMLSHAVRPDSIA-FLEVLSACSHGGLVSEGLRY 487 (665)
Q Consensus 419 ~~~~~~~~-----~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 487 (665)
+++.+.-. ++|+.- --.|+.+-+ -.-+...|...-.+..+ +.||.+. -.....++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 88887544 344432 222333221 22356667666666655 5788753 34445688999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
++.+-+ ..|....+. +|.+..--+.+++-+++. .++|| ..+...+..+....|++..|+.-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999865 456665443 344443334455544444 45664 556667778888999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 044628 563 EPSKPVNYALVSNVYASE-RCWFDVARLRKMMRD 595 (665)
Q Consensus 563 ~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~ 595 (665)
.|. .+.|.+|+++-... |+-.+++..+-+..+
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 998 68899999997766 998888888776654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0013 Score=59.07 Aligned_cols=131 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD--SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTC 506 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 506 (665)
....+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+. .+-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566666677777788888887777776433322 245666666777777777777777777652 1223455555
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
+..++...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 112677888999999999986 5566666665554
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0021 Score=68.06 Aligned_cols=65 Identities=22% Similarity=0.088 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+...+.++.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455555555555567777777777777777773 6677777777777777777777777766554
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0018 Score=63.15 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA-CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344433333 33457777899999999984 5667888999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEPRS----DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-...|+.+....+.+++.+.-|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998 333333 489999999999999999999999999988874
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.17 Score=54.86 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=65.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh--hcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCchHHHHH
Q 044628 75 KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVY--VKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRR 152 (665)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 152 (665)
..+++..|.+....+.+.. |+. .|...+.++ .|.|+.++|..+++....+
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~------------------------- 72 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGL------------------------- 72 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccC-------------------------
Confidence 4456777777777766643 333 233333333 4677778887777665321
Q ss_pred hhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChH----HHHHHHhccCCCCc
Q 044628 153 MLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVE----DARRVFDEVLCRDL 228 (665)
Q Consensus 153 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~ 228 (665)
+.. |..|...+-.+|...+..++|..++++..+. .|+......+..+|.|.+.+. .|.+++...+++--
T Consensus 73 ----~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 73 ----KGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred ----CCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 111 4445555555555666666666666665553 344555555555555555443 34455554444333
Q ss_pred hhHH
Q 044628 229 VLWN 232 (665)
Q Consensus 229 ~~~~ 232 (665)
.-|+
T Consensus 146 yfWs 149 (932)
T KOG2053|consen 146 YFWS 149 (932)
T ss_pred hHHH
Confidence 3343
No 169
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.099 Score=52.15 Aligned_cols=269 Identities=12% Similarity=0.043 Sum_probs=139.9
Q ss_pred CCCHhhHHHHHHHHhcc--CCcHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhccC--------CCC
Q 044628 260 KGDYFTFSSLVNSCGTL--GSSKLGRQIHGLVIKQSFDLDVL-VATSLVDMYAKNGNIDDACRVFDGMT--------AKN 328 (665)
Q Consensus 260 ~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~ 328 (665)
.|....+..++....-. ..+.--.+++....+.-+.|+-. +...|+.-+.+ +.+++..+.+.+. +.=
T Consensus 220 ~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~l 297 (549)
T PF07079_consen 220 IPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEEL 297 (549)
T ss_pred CcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444443222 23334445555555555555433 34445555544 4444444443332 234
Q ss_pred chhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHhC-CCCc---hHhHHHHHHHHHHhCCCC
Q 044628 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI-------LSSCG-SLSI---SCETRQVHAYAIKNGVQA 397 (665)
Q Consensus 329 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------l~~~~-~~~~---~~~a~~i~~~~~~~g~~~ 397 (665)
+.++..++....+.++..+|-..+.-+.- +.|+...-..+ -+..+ .-.. +..-..+|..+...++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 45788888888899999988888776654 23433211111 11111 1111 222223333333333322
Q ss_pred chhHHHHHH---HHHHhcCC-HHHHHHHHhcCCC---CChhHHHHHHH----HHHhc---CChHHHHHHHHHHHHcCCCC
Q 044628 398 FLSIENALI---NAYSKCGS-IAGALQCFGSVKE---PDLVTWTSIIG----AYAFH---GLSKESIEVFEKMLSHAVRP 463 (665)
Q Consensus 398 ~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~p 463 (665)
..-+ .-|+ .-+-+.|. -++|.++++.+.+ -|...-|.... +|.+. ....+-+.+-+-..+.|+.|
T Consensus 376 qQLv-h~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLV-HYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1111 1122 22334444 7778888877653 45544443322 22211 22333444444455567776
Q ss_pred CHH----HHHHHHHH--HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHH
Q 044628 464 DSI----AFLEVLSA--CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLG 537 (665)
Q Consensus 464 ~~~----t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 537 (665)
-.+ .-+.|.+| +...|++.++.-+-.-+.+ +.|++.+|.-+.-.+....+++||.+++...| |+..+|.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 332 23333333 4556888887766555554 77888888888888888888888888888874 4665655
Q ss_pred H
Q 044628 538 A 538 (665)
Q Consensus 538 ~ 538 (665)
+
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 4
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00084 Score=52.97 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=40.6
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 552 (665)
+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+.+.|
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 10 YYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 33344444444444444331 1112233444444444455555555555443 2222 223455555555555666666
Q ss_pred HHHHHHHHhcCC
Q 044628 553 KWAAEKLLELEP 564 (665)
Q Consensus 553 ~~~~~~~~~~~p 564 (665)
...++++++..|
T Consensus 88 ~~~~~~~~~~~~ 99 (100)
T cd00189 88 LEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHccCC
Confidence 666666555554
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0018 Score=55.71 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=77.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHH
Q 044628 507 LTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 584 (665)
...-+...|++++|..+|+-. -..| +...|..|...|...++++.|+..+..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344566889999999999887 2333 45678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 044628 585 DVARLRKMMRD 595 (665)
Q Consensus 585 ~A~~~~~~m~~ 595 (665)
+|+..|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.19 Score=54.46 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 537 GAFIGACKVHGSI---GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 537 ~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
+.|+..|++.++. -+|+-+++..+...|.|...-..|+.+|.-.|-...|.++++.+.-+.+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 4455666665543 3455555666666666666666667777777777777777666654443
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.52 E-value=0.00034 Score=51.07 Aligned_cols=61 Identities=23% Similarity=0.204 Sum_probs=49.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 507 LTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999888 5566 466788888889999999999999999999999864
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.088 Score=52.02 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 546 (665)
+.+.-+.-|...|....|.++-... .+ |+...|...+.+|+..|++++-.++... +-.+.-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566677788888887775544 44 8999999999999999999998887664 23457789999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 547 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
|+..+|..+..+ ..+..-..+|.++|+|.+|.+.--+.+
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999888877 112567889999999999988754443
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00014 Score=53.70 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688888899999988888988888888899999999999998888877654
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00035 Score=52.45 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=50.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
..+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788999999999999999999999999999999999999999999998887654
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.50 E-value=8.4e-05 Score=45.70 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 044628 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588 (665)
Q Consensus 556 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 588 (665)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.018 Score=50.05 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChhH
Q 044628 461 VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL-PDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP---RSDT 535 (665)
Q Consensus 461 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 535 (665)
+.|....-..|..+....|+..+|...|++... |+- -|....-.+..+....++..+|...+++. ...| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 367776777788888899999999999998877 543 46667777888888889999999888887 2223 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
...+.+.+...|..+.|+..|+.++.--|. +..-...+.+++++|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455668889999999999999999999886 77788889999999999888766555543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.004 Score=65.90 Aligned_cols=143 Identities=15% Similarity=0.033 Sum_probs=105.4
Q ss_pred CCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcC--------CcHHHHHHHHHH
Q 044628 425 VKEPDLVTWTSIIGAYAFHG-----LSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHG--------GLVSEGLRYFNL 490 (665)
Q Consensus 425 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~ 490 (665)
....|...|...+.|..... +..+|..+|++..+. .||.. .+..+..++... +.+..+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33578899999998865432 367899999999985 78764 455544433221 123344444444
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 491 MISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 491 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
.........+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3331123345577888877777889999999999999 778888889999999999999999999999999999998753
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.0034 Score=54.33 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=92.4
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC
Q 044628 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM---PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS--KP 567 (665)
Q Consensus 493 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~ 567 (665)
++..+-|++..--.|...+.+.|+..||...|++. .+.-|......+..+....++...|...++++.+.+|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33456788888889999999999999999999998 45557888888889999999999999999999999887 67
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.....++..|...|++++|+..|+.....-
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 788899999999999999999999887654
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.0005 Score=53.27 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=40.2
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHH
Q 044628 443 HGLSKESIEVFEKMLSHAVR-PDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEA 520 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 520 (665)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|.++++. .+ ..| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666664221 1233344455666666666666666655 11 112 223333345556666666666
Q ss_pred HHHHHh
Q 044628 521 YDLLAS 526 (665)
Q Consensus 521 ~~~~~~ 526 (665)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.37 E-value=0.19 Score=50.19 Aligned_cols=409 Identities=11% Similarity=0.094 Sum_probs=223.1
Q ss_pred hcCCChHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhCCChHHHHHHHhccCCC-CchhHHHHHHHH--HhcCCc
Q 044628 173 VQADDIEVGRRLHSFILKVGFGL-----NCFVSSALVDLYGKCGFVEDARRVFDEVLCR-DLVLWNVMVSCY--ALNCLG 244 (665)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~g~~ 244 (665)
-+.+++.++..+|.++.+..-.. .....+.++++|.. .+++.....+.+..+. ....|-.+..++ -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 36678889998888887653221 13445667777764 3444444444443221 133455555543 467888
Q ss_pred hHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC----CCchhHHHHHHH
Q 044628 245 DGAIAVFNLMRLE--GMKG------------DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF----DLDVLVATSLVD 306 (665)
Q Consensus 245 ~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~ 306 (665)
.+|++.+..-.+. +-.| |-.-=+.....+...|.+.+|+.+++.++..=+ ..+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888776554 3222 111123455667888999999988888776544 478888888777
Q ss_pred HHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcC-------------------------------CChHHHHHHHHHH
Q 044628 307 MYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQN-------------------------------GDGREAVKLLRDM 355 (665)
Q Consensus 307 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------------------------------g~~~~A~~~~~~m 355 (665)
++++.=-++- -+.+...=..-|--||..|.+. .+..--+++++..
T Consensus 176 mlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 176 MLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7766421111 0111110011122222222221 1111122233333
Q ss_pred hhCCCCCCHHH-HHHHHHHhCCCCchHhHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC
Q 044628 356 LQGSFCPDEVT-LASILSSCGSLSISCETRQVHAYAIKNGVQA----FLSIENALINAYSKCGSIAGALQCFGSVK--EP 428 (665)
Q Consensus 356 ~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~ 428 (665)
...-+.|+... ...+...+.+ +.+.+..+-+.+....+.+ -+..+..++....+.++...|...+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 33445565432 2333333333 4444444444443332111 23345556666677788888877766544 23
Q ss_pred ChhH-------HHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH---HHHhcCCc-HHHHHHHHHHHH
Q 044628 429 DLVT-------WTSIIGAYA----FHGLSKESIEVFEKMLSHAVRPDSIA-FLEVL---SACSHGGL-VSEGLRYFNLMI 492 (665)
Q Consensus 429 ~~~~-------~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll---~a~~~~g~-~~~a~~~~~~~~ 492 (665)
+... -..+-+..+ .+-+...=+.+|+.....++ |..- ...++ .-+-+.|. -++|+++++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 2221 111222222 12233444556666665433 3321 11122 22444554 788999998887
Q ss_pred HhcCCCC-ChhhHHHHHH----HHHhc---C---ChHHHHHHHHhCCCCCC----hhHHHHHHHH--HHhcCCHHHHHHH
Q 044628 493 SDYHILP-DSEHYTCLTD----LLGRV---G---LLVEAYDLLASMPIEPR----SDTLGAFIGA--CKVHGSIGLAKWA 555 (665)
Q Consensus 493 ~~~~~~p-~~~~~~~l~~----~~~~~---g---~~~~A~~~~~~~~~~p~----~~~~~~ll~~--~~~~g~~~~a~~~ 555 (665)
+ +.| |.++-+.+.. .|..+ . ++-.-.+++++.++.|- ...-+.|..| ...+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6 333 3333332221 12111 1 12233445556666663 4455666655 5679999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 556 AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 556 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
..-+.++.| ++.+|..+|-++....+++||..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 69999999999999999999999998765
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0039 Score=55.81 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD--SIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|++.++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666666655322221 12455555566666666666666666554
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.29 E-value=0.00035 Score=51.55 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
.|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555441 1123444444445555555555555555544
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.29 E-value=0.00055 Score=50.68 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=53.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHG-SIGLAKWAAEKLLELEP 564 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 564 (665)
+...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777888888888888888888887 45564 667888888888888 79999999999999887
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.051 Score=51.66 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=99.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--C
Q 044628 407 NAYSKCGSIAGALQCFGSVKE--PDLV-T---WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH--G 478 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~ 478 (665)
..+.+.|++++|.+.|+++.. |+.. . .-.++.+|.+.+++++|...|++..+....-...-+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 344567788888888877763 3221 1 123456677778888888888888775222122333333333221 1
Q ss_pred ---------------Cc---HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHH
Q 044628 479 ---------------GL---VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI 540 (665)
Q Consensus 479 ---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 540 (665)
.+ ..+|++.|+.+++.+ |+. .-..+|...+..+...--.. -..+.
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~-e~~ia 182 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKY-ELSVA 182 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 11 234445555555432 332 22333433333321000000 01334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
.-|.+.|.+.-|..-++.+++--|+. ..+...++++|...|..++|..+.+...
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 55788899999999999999888874 4566788899999999999998877654
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.25 E-value=0.0083 Score=58.80 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=19.8
Q ss_pred CHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHh
Q 044628 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDML 356 (665)
Q Consensus 313 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 356 (665)
++++|..+|++ ....|-..|++++|.+.|.+..
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHH
Confidence 56666666443 3556666777777777776653
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.18 Score=53.46 Aligned_cols=339 Identities=14% Similarity=0.006 Sum_probs=169.1
Q ss_pred hhhCCCCCCcchHHH-----HHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---hHHHHHHHhccC
Q 044628 153 MLLDNVRLDHITFNS-----LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF---VEDARRVFDEVL 224 (665)
Q Consensus 153 m~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 224 (665)
+..-|++.+..-|.. +|.-+...+.+..|.++-..+...-..- ..++.....-+.+..+ -+.+..+-+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 344566666555543 5666677788888888877764322222 5666666666766632 333444444554
Q ss_pred C--CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCC----CCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCch
Q 044628 225 C--RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMK----GDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV 298 (665)
Q Consensus 225 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 298 (665)
. ...++|..+.+--.+.|+.+-|..+++.=...+-. .+-.-+...+.-+...|+.+...+++-++.+.- +.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 4 46678888888888899999888887643222110 122234445556666677766666665554431 11
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-CCchhHHHHHHHHHcCCChHHHHHHHHHH------hhCCCCCCHHHHHHHH
Q 044628 299 LVATSLVDMYAKNGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQNGDGREAVKLLRDM------LQGSFCPDEVTLASIL 371 (665)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll 371 (665)
..+. .-..+...|..+|.+..+ .|..+ +..+-+.++-.+++..|..= ...|..|+. ...-
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a 645 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAA 645 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHH
Confidence 1111 111223334444443322 11111 11122222323333222110 011223332 2333
Q ss_pred HHhCCCCchHhHHHHH----------HHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 044628 372 SSCGSLSISCETRQVH----------AYA-IKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAY 440 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~----------~~~-~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 440 (665)
.+|++........+.. +.+ .+.|....--+.+--+.-+...|+..+|.++-.+..-||-..|---+.++
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTAL 725 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 3444433321111111 111 11222121222233333455566677777777666666777666667777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 044628 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520 (665)
Q Consensus 441 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 520 (665)
+..+++++-.++-+.++. +.-|.-...+|.+.|+.++|.+++-+... . .-.+.+|.+.|++.+|
T Consensus 726 a~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEA 789 (829)
T ss_pred HhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC---h-------HHHHHHHHHhccHHHH
Confidence 777776666555444321 33444556667777777777766654421 1 1346666677776666
Q ss_pred HHHH
Q 044628 521 YDLL 524 (665)
Q Consensus 521 ~~~~ 524 (665)
.++-
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 6553
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.0052 Score=50.66 Aligned_cols=86 Identities=14% Similarity=-0.034 Sum_probs=56.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 044628 507 LTDLLGRVGLLVEAYDLLASM---PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS---KPVNYALVSNVYA 578 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 578 (665)
+..++-..|+.++|+.+|++. +.... ...+-.+.++++..|++++|..++++.++-.|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566667777777777766 22221 234555667777778888888888877777676 5556666777777
Q ss_pred hcCCHHHHHHHHHH
Q 044628 579 SERCWFDVARLRKM 592 (665)
Q Consensus 579 ~~g~~~~A~~~~~~ 592 (665)
..|+++||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776543
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.20 E-value=0.0046 Score=49.02 Aligned_cols=81 Identities=5% Similarity=-0.075 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCHhhHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCchhH
Q 044628 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGM-KGDYFTFSSLVNSCGTLG--------SSKLGRQIHGLVIKQSFDLDVLV 300 (665)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 300 (665)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556677777999999999999999999 999999999999977553 23456788899999999999999
Q ss_pred HHHHHHHHHh
Q 044628 301 ATSLVDMYAK 310 (665)
Q Consensus 301 ~~~li~~~~~ 310 (665)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.42 Score=50.33 Aligned_cols=301 Identities=15% Similarity=0.116 Sum_probs=145.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCC-----chhHHHHHHHHHhcCCchHHHHH
Q 044628 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRD-----LVLWNVMVSCYALNCLGDGAIAV 250 (665)
Q Consensus 176 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~ 250 (665)
|++++|++++-.+-+.. .-|.++.+.|++-...++++.-...+ ..+|+.+...++....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555442 23455666666666666665432221 23566666666666666666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCch
Q 044628 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330 (665)
Q Consensus 251 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 330 (665)
|..-... . ..+.++-...++++-+.+- ..++.+....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 819 Y~~~~~~------e---~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 819 YSYCGDT------E---NQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred HHhccch------H---hHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 6543211 0 1222222222222222211 1234455556666677777777777766665544332
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 410 (665)
+-+..|...++|.+|.++-+...- |...|+ |.- .+-+++. +... ---|.++.
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~~l----~qv~tl---iak--------~aaqll~---~~~~-------~eaIe~~R 934 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRFQL----PQVQTL---IAK--------QAAQLLA---DANH-------MEAIEKDR 934 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccc----hhHHHH---HHH--------HHHHHHh---hcch-------HHHHHHhh
Confidence 234445555666666665544321 222222 110 1111111 1110 12356778
Q ss_pred hcCCHHHHHHHHhcCCCCCh---hHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 044628 411 KCGSIAGALQCFGSVKEPDL---VTWTSIIGAY----AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483 (665)
Q Consensus 411 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 483 (665)
+.|..-+|.+++.+|.+... +.|..+-..| .-..+..++++-.++...+|...|... +...|...+
T Consensus 935 ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~ 1007 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAE 1007 (1189)
T ss_pred hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhh
Confidence 88888888888887763111 1111111111 112234455555555555554333221 223344444
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCChhHHHHHH
Q 044628 484 GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPRSDTLGAFI 540 (665)
Q Consensus 484 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll 540 (665)
+-++.+..-+ | ....|+-.|..--...|+.+.|++.--.+ .+-|...+|..|.
T Consensus 1008 ~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1008 QSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 4444443322 1 23445555556667789999888754333 3445555665554
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.006 Score=48.40 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHhcCCCCChhhH
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSHAV-RPDSIAFLEVLSACSHGG--------LVSEGLRYFNLMISDYHILPDSEHY 504 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 504 (665)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|.. .+++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 4456667777999999999999999999 899999999999876642 34567788888887 5899999999
Q ss_pred HHHHHHHHh
Q 044628 505 TCLTDLLGR 513 (665)
Q Consensus 505 ~~l~~~~~~ 513 (665)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887764
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.15 E-value=0.06 Score=51.18 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC--Cc-hh---HHHHHHHHHcCCChHHHHHHHHHHhhCC
Q 044628 304 LVDMYAKNGNIDDACRVFDGMTAK--NV-VS---WNTMVVGFGQNGDGREAVKLLRDMLQGS 359 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~~~--~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 359 (665)
....+.+.|++++|.+.|+.+... +. .. .-.++.+|.+.+++++|...|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344456678888888888877642 22 11 2345567778888888888888887753
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.0035 Score=59.99 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM-PIEPRS----DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSN 575 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 575 (665)
|..-+..+.+.|++++|+..|+.. ...|+. ..+.-+..++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333344444456666666655555 223332 244445555666666666666666666655553 334445566
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 044628 576 VYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 576 ~y~~~g~~~~A~~~~~~m~~ 595 (665)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.13 E-value=0.0014 Score=65.71 Aligned_cols=65 Identities=15% Similarity=-0.021 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN---YALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+...|..+..++...|++++|+..++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667777777777777777777777777777777643 777777777777777777777777654
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.12 E-value=0.0049 Score=62.58 Aligned_cols=118 Identities=11% Similarity=-0.005 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHhCCChHHHHHHHhccCCC------CchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHH
Q 044628 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR------DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267 (665)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 267 (665)
..+......+++......+++.+..++-+.... -..+..++|+.|.+.|..++++.+++.=..-|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666667777777776655321 12355688999999999999999999888899999999999
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044628 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311 (665)
Q Consensus 268 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 311 (665)
.|++.+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988887766766666666656555
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.0052 Score=55.19 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=76.1
Q ss_pred HHHHhcC--CCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-------------
Q 044628 419 LQCFGSV--KEPDLVTWTSIIGAYAFH-----GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG------------- 478 (665)
Q Consensus 419 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 478 (665)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 357777888888887654 67777788889999999999999999999887653
Q ss_pred ---CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 044628 479 ---GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 479 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 516 (665)
.+.+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234668889999977 7999999999999998887765
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.014 Score=57.19 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHh
Q 044628 445 LSKESIEVFEKMLS----HAVRPDS--IAFLEVLSACSHG-GLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGR 513 (665)
Q Consensus 445 ~~~~A~~~~~~m~~----~g~~p~~--~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 513 (665)
++++|++.+++..+ .| .|+. ..+..+...|... |++++|++.|++...-+..... ..++..+..++.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666666666554 22 3332 2455666778888 9999999999988764332222 3456777889999
Q ss_pred cCChHHHHHHHHhC---CCCC-----Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--HH---HHHHHHHh
Q 044628 514 VGLLVEAYDLLASM---PIEP-----RSD-TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN--YA---LVSNVYAS 579 (665)
Q Consensus 514 ~g~~~~A~~~~~~~---~~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~---~l~~~y~~ 579 (665)
.|++++|.++|++. .... +.. .+...+-.+...||...|.+.+++..+.+|.-..+ +. .|+.+|-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999999987 1111 111 12222334566789999999999999998863222 22 34444432
Q ss_pred c--CCHHHHHHHHHHH
Q 044628 580 E--RCWFDVARLRKMM 593 (665)
Q Consensus 580 ~--g~~~~A~~~~~~m 593 (665)
. ..+++|..-|+.+
T Consensus 248 ~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp T-CCCHHHHCHHHTTS
T ss_pred CCHHHHHHHHHHHccc
Confidence 2 3455555555444
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.07 E-value=0.0074 Score=61.31 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=75.9
Q ss_pred CCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCchh
Q 044628 258 GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ--SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA----KNVVS 331 (665)
Q Consensus 258 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 331 (665)
+.+.+...+..+++.+....+++.+..++...... ....-..+..++|+.|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446666667777777777777777766666554 2222233445677777777777777776665443 56677
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCC
Q 044628 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377 (665)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 377 (665)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666666555555433
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.03 E-value=0.0062 Score=59.41 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHhC--CCCCChhHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR-VGLLVEAYDLLASM--PIEPRSDTLGAFIGA 542 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 542 (665)
.+|..+++.+-+.+..+.|..+|..+.+. -..+...|...+.+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999862 22345667666666455 56666699999998 444577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 543 CKVHGSIGLAKWAAEKLLELEPSKP---VNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 543 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
....|+.+.++.+|++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998766643 4788888888999999999999988865
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.66 Score=49.53 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 044628 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACK 544 (665)
Q Consensus 465 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 544 (665)
..|.+--+.-+...|...+|.++-.+..- ||...|.--+.+++..+++++-+++-+++. .+.-|.-+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 34555556677788999999888766643 888888888999999999999999988872 1445777888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
+.|+.++|.+++.+.-.+ .-...+|.+.|++.+|.++--+-
T Consensus 756 ~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 999999999887654332 25788999999999999875443
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.96 E-value=0.0035 Score=60.98 Aligned_cols=128 Identities=9% Similarity=-0.004 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH---HhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCChh
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMI---SDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-------PI-EPRSD 534 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 534 (665)
.|..|.+.|.-.|++++|+..++.-. +.+|-.. ....+..+.+++.-.|+++.|.+.|+.. +. ....-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 56666666777789999998876432 2344332 2456888889999999999999998875 21 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLE----LE--PSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
+-.+|..+|....+++.|+.++.+=+. ++ -....++..|+++|...|.-+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455677778777888999988776543 22 2245788999999999999999987765543
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.95 E-value=0.092 Score=54.48 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHH
Q 044628 246 GAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIH 286 (665)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 286 (665)
+-+.-+++|++.|-.|+..... ..|+-.|.+.+|-++|
T Consensus 618 ~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklF 655 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLF 655 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHH
Confidence 3344456666666666654322 2344445555555444
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0028 Score=47.43 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=51.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 044628 509 DLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 572 (665)
..|.+.+++++|++.++++ ...|+ ...|......+...|+++.|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999888 55564 5567777788889999999999999999999987655443
No 205
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.94 E-value=0.021 Score=48.98 Aligned_cols=92 Identities=10% Similarity=0.005 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044628 404 ALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480 (665)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 480 (665)
.+...+...|++++|.++|+-+.. .+..-|-.|..++-..|++++|+..|....... .-|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344455677888888888876652 455677777777888888888888888887753 2345677777778888888
Q ss_pred HHHHHHHHHHHHHhcC
Q 044628 481 VSEGLRYFNLMISDYH 496 (665)
Q Consensus 481 ~~~a~~~~~~~~~~~~ 496 (665)
.+.|++.|+..+...+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887776433
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.15 Score=52.97 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=100.9
Q ss_pred chHHHHHHHHhcCCChHHHHH--HHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHh
Q 044628 163 ITFNSLLRACVQADDIEVGRR--LHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYAL 240 (665)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 240 (665)
..|++.=++|.+.++..--+- -++.+.+.|-.|+.... .+.++-.|++.+|.++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------ 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------
Confidence 345555566666665543332 34556667766766543 3445667888888888765
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044628 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRV 320 (665)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (665)
+|.-..|+++|..|+-- -...-+...|+-++-+.+.+.-.+.. .++.--.+...++...|+.++|..+
T Consensus 658 ~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 658 SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhh
Confidence 46666677777666421 01222334444444333333221110 0111112233444555555555544
Q ss_pred HhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchh
Q 044628 321 FDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400 (665)
Q Consensus 321 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 400 (665)
.- .+|=.+-++++-+++-. .+..+...+...+-+...+..|-+||..+-+.
T Consensus 726 ~~------------------d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 726 CG------------------DHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred hh------------------cccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 21 12222222222222211 22233333333344455555666666655332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKE 427 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 427 (665)
.+++++....+++.+|..+-++.++
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCcc
Confidence 3577778888888888888887775
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.93 E-value=0.0016 Score=42.99 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
.+|..+..++...|++++|++.++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999998888764
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.12 Score=54.11 Aligned_cols=130 Identities=17% Similarity=0.087 Sum_probs=58.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044628 406 INAYSKCGSIAGALQCFGSVKE-----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480 (665)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 480 (665)
|.++.+.|++-...++++.-.. .-...|+.+...++....+++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 4555566666665555554321 11234555555555555555555555432211 112333333333
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556 (665)
Q Consensus 481 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 556 (665)
+++-..+-+.+ +-+....-.|.+++.+.|.-++|.+.+-+-+. | .+-+.+|...+++.+|.++.
T Consensus 838 f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 838 FGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHHHHHHHHHHHHHHHHHHH
Confidence 33333322222 22344444555566666666666555544421 1 12233444444554444443
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0076 Score=59.20 Aligned_cols=63 Identities=10% Similarity=-0.121 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
.++..|..++.+.+++..|++..+++++++|+|..+...-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 356667778889999999999999999999999999999999999999999999999999753
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.0087 Score=53.80 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=56.5
Q ss_pred CCCchhHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc----------------CCcHHHH
Q 044628 225 CRDLVLWNVMVSCYALN-----CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL----------------GSSKLGR 283 (665)
Q Consensus 225 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~ 283 (665)
.+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+-+. .+-+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34445555555555433 44444555556666666666666666666655432 1356678
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044628 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313 (665)
Q Consensus 284 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 313 (665)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888766554
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.024 Score=46.77 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=63.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 044628 436 IIGAYAFHGLSKESIEVFEKMLSHAVRPDS--IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLG 512 (665)
Q Consensus 436 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 512 (665)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445667788899999999999888766553 3566777888888999999999988876421111 1222233345677
Q ss_pred hcCChHHHHHHHHhC
Q 044628 513 RVGLLVEAYDLLASM 527 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~ 527 (665)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888876543
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.1 Score=48.11 Aligned_cols=137 Identities=9% Similarity=-0.050 Sum_probs=99.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHH-----H
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENA-----L 405 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~-----l 405 (665)
.-+.++..+...|.+.-.+.++++.++...+-+......+.+.-.+.|+.+.+...++.+.+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44667777778888888888888888876666777777888888888999999888887766443333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044628 406 INAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL 469 (665)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 469 (665)
...|.-..++..|...|+++.. .|++.-|.-.-+....|+..+|++..+.|... .|...+-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 3445567788888888888764 56666676666677778899999999999885 45544433
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.80 E-value=0.17 Score=50.51 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=102.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 405 LINAYSKCGSIAGALQCFGSVKEP-------DLVTWTSIIGAYAF---HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
|+-.|-...+++...++.+.+... ....--...-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444577778888888888877642 11112223445555 78899999999886666667777787776655
Q ss_pred Hhc---------CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH----HHHH---HhC-----CCCCCh
Q 044628 475 CSH---------GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA----YDLL---ASM-----PIEPRS 533 (665)
Q Consensus 475 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A----~~~~---~~~-----~~~p~~ 533 (665)
|-. ....++|++.|.+.-+ +.|+..+--.++.++..+|...+. .++- ... ...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 422 2347788888886643 557665555555566655543222 2222 111 223333
Q ss_pred hH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 534 DT--LGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 534 ~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
.- +.+++.++.-.|+.+.|.+++++++++.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33 4678899999999999999999999998764
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.29 Score=48.40 Aligned_cols=85 Identities=11% Similarity=0.006 Sum_probs=42.2
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcC
Q 044628 440 YAFHGLSKESIEVFEKMLSH---AVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVG 515 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 515 (665)
..++|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|. +..|..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666552 1233333455555555666666666665555543 2221 111222222333445
Q ss_pred ChHHHHHHHHhC
Q 044628 516 LLVEAYDLLASM 527 (665)
Q Consensus 516 ~~~~A~~~~~~~ 527 (665)
++++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666666554
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.031 Score=53.58 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHH
Q 044628 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS----EHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGA 538 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 538 (665)
|...+......|++++|+..|+.+.+.+ |+. ..+--+..+|...|++++|...|+.+ ...|+ ...+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4333333344566777777777666632 332 34555666777777777777777766 22222 334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
+...+...|+.+.|+..++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56667788899999999999999888854
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.19 Score=46.43 Aligned_cols=165 Identities=10% Similarity=-0.029 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC--CCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044628 403 NALINAYSKCGSIAGALQCFGSVK--EPD--------LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~--~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 472 (665)
++|...+.-..-+++-...|+.-. +.. ...-++++..+.-+|.+.-.+.++++.++...+-+......+.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 455555554444444444444322 122 2344667777778888999999999999976555777788888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhc
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYH----ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPI-EP-RSDTLGAFIGACKVH 546 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~ 546 (665)
+.-.+.|+.+.|..+|+...+..+ +.-+..+...+...|.-++++.+|...+.+++. .| |+...+.-.-+..-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 888999999999999997766433 222233333444556677888888888888832 22 344444443344557
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 044628 547 GSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 547 g~~~~a~~~~~~~~~~~p~~~ 567 (665)
|+...|.+..+.+++..|...
T Consensus 300 g~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHhccCCccc
Confidence 888999999999999988743
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.026 Score=45.86 Aligned_cols=90 Identities=17% Similarity=0.054 Sum_probs=73.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCC
Q 044628 509 DLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP----VNYALVSNVYASERC 582 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~ 582 (665)
-+++..|++++|++.|.+. .+-| ....|+.-..+++-+|+.++|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999998887 4444 577899999999999999999999999998754322 457788889999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 044628 583 WFDVARLRKMMRDNCD 598 (665)
Q Consensus 583 ~~~A~~~~~~m~~~~~ 598 (665)
-+.|+.-|+.....|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998887764
No 218
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.42 E-value=1.2 Score=44.67 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH-HHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHY-TCLT 508 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~ 508 (665)
..|...++.-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-... -||...| .-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 355566666666666777888888888877 4566667777776554 36777788888776652 2443333 4556
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 509 DLLGRVGLLVEAYDLLASM--PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
+-+.+.++-+.|..+|+.. .+..+ ..+|..++..-..-|+...+..+-+++.++-|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677788888888888755 22233 5577777777777888877777777777777763
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.37 E-value=0.87 Score=42.55 Aligned_cols=195 Identities=20% Similarity=0.128 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVK-----EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 473 (665)
..........+...+++..+...+.... ......+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444556666677777777776666543 24445566666667777777888888887776533331 22222222
Q ss_pred -HHhcCCcHHHHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--hhHHHHHHHHHHh
Q 044628 474 -ACSHGGLVSEGLRYFNLMISDYHILP----DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR--SDTLGAFIGACKV 545 (665)
Q Consensus 474 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 545 (665)
++...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887744 222 2333444444466778888888888777 33333 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 546 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.++.+.+...+..+++..|.....+..++..+...|.++++...+.+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888755666677777776777888888777766543
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.066 Score=46.50 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
....++..+...|+++.|...+++++..+|-+-..|..++.+|...|+..+|.++++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999988864
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.35 E-value=0.057 Score=54.66 Aligned_cols=158 Identities=9% Similarity=0.060 Sum_probs=86.4
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhc---------CCcHHHHHHHHHHHH
Q 044628 431 VTW--TSIIGAYAFH-----GLSKESIEVFEKMLS-HAVRPDSI-AFLEVLSACSH---------GGLVSEGLRYFNLMI 492 (665)
Q Consensus 431 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 492 (665)
..| ...+.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 4555554432 134567778888772 23566654 44444333221 123345555555555
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 044628 493 SDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570 (665)
Q Consensus 493 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 570 (665)
+ --+-|......+..++.-.|+++.|...|++. ...|| ..+|......+...|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 11234555555556666666677777777776 55565 44555555556666777777777777777777643332
Q ss_pred H--HHHHHHHhcCCHHHHHHHHH
Q 044628 571 A--LVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 571 ~--~l~~~y~~~g~~~~A~~~~~ 591 (665)
+ ..+++|...+ .++|++++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 2 3444565554 455555543
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.20 E-value=0.0077 Score=45.72 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 534 DTLGAFIGACKVHGSIGLAKWAAEKLLEL----EPS---KPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
.++..+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777888888888888777643 222 24567788889999999999998887764
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.0079 Score=45.66 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM-------P-IEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444455555555555555554444 1 1122 344555666666677777777777666543
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.083 Score=50.20 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHhcCCCCChhhH
Q 044628 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS---HGGLVSEGLRYFNLMISDYHILPDSEHY 504 (665)
Q Consensus 428 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 504 (665)
.|...|-.|...|..+|+++.|..-|.+..+.. .+|...+..+..++. ...+..++.++|+++.+ .-+-|+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 355566666666666666666666666665531 122233333333322 22234455566665554 122234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFI 540 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 540 (665)
.-|.-.+...|++.+|...++.| ..-|....|..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 44444555555555555555555 3333333344443
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.17 E-value=0.028 Score=54.98 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=88.2
Q ss_pred HHHHHHHhCCCCchHhHHHHHHHHH----HhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChhH
Q 044628 367 LASILSSCGSLSISCETRQVHAYAI----KNGVQ-AFLSIENALINAYSKCGSIAGALQCFGSVK-------EP--DLVT 432 (665)
Q Consensus 367 ~~~ll~~~~~~~~~~~a~~i~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~ 432 (665)
|..+-..|.-.|+++.+...|+.-. +.|-. .....+..|..++.-.|+++.|.+.|+... ++ ...+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444445556688999998887543 23322 223456677888888899999998887543 22 3456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 433 WTSIIGAYAFHGLSKESIEVFEKMLS----HA-VRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 433 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
..+|.+.|.-..++++|+..+.+-+. .+ ..-....+.+|..++...|..++|+.+.+...+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77788888888899999988876443 11 112335788999999999999999887766544
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.10 E-value=0.61 Score=38.39 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=83.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 519 (665)
+.-.|..++..++..+...+ .+..-++-++.-....-+-+...+.++.+-+-+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34457777777877777663 233334444433333344455555666554432222 3344444
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 520 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
....+-.++ .+......-+.+...+|+.++-.+++..+.+-+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 234455566788889999999999999998766567899999999999999999999999999999875
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.2 Score=49.60 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
.++..+.-++.+.+++.+|++.-++. ...| |.-..-.=..+|...|+++.|+..|+++++++|+|..+..-|+.+--+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778888899999998887777 4444 455555666889999999999999999999999998888888888877
Q ss_pred cCCHHHH-HHHHHHHhhC
Q 044628 580 ERCWFDV-ARLRKMMRDN 596 (665)
Q Consensus 580 ~g~~~~A-~~~~~~m~~~ 596 (665)
..+..+. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7776665 7788888654
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.083 Score=44.08 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCChhHHHHHHHHHHh
Q 044628 496 HILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPRSDTLGAFIGACKV 545 (665)
Q Consensus 496 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~ 545 (665)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566777777777777777777777766555 555556677777754433
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=95.78 E-value=0.41 Score=48.68 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 044628 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLA 525 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 525 (665)
.+|.++-++..+.+ .-|......+..+....|+++.|...|++... +.|| ...|......+.-+|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555555543 33445555555555555556666666666654 3444 3344444444555666666666666
Q ss_pred hC-CCCC
Q 044628 526 SM-PIEP 531 (665)
Q Consensus 526 ~~-~~~p 531 (665)
+. ...|
T Consensus 397 ~alrLsP 403 (458)
T PRK11906 397 KSLQLEP 403 (458)
T ss_pred HHhccCc
Confidence 63 3334
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.75 E-value=0.42 Score=44.14 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=73.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 044628 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPD--SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512 (665)
Q Consensus 435 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 512 (665)
.....+...|++.+|.+.|+++...-.... ......+..++.+.|++++|...++...+.+.-.|... +.....+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 344455666777777777777766421111 12344556666677777777777777666443333221 111111111
Q ss_pred hcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------------hHHHHHH
Q 044628 513 RVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV-----------------NYALVSN 575 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~ 575 (665)
......... ......+....|...++.+++.-|+++- .-..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000000 0112223445666677777777776542 2346788
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 044628 576 VYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 576 ~y~~~g~~~~A~~~~~~m~~~ 596 (665)
.|.+.|+|..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999988764
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.75 E-value=0.19 Score=48.69 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC----Chhh
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDS---IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP----DSEH 503 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~ 503 (665)
.|..+..++.+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+-..-.. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 455555565555555666555444333 1233311 2334455566666777888888877765211111 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCChhHHHH-----HHHHHHhcCCHHHHHHHHHHHHhc--CCC----
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM-------PIEPRSDTLGA-----FIGACKVHGSIGLAKWAAEKLLEL--EPS---- 565 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~--~p~---- 565 (665)
+..|...|++..++++|.-+..++ +++-=..-|.. +.-+++..|....|.+..+++.++ ...
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777778888888877776655544 22211222332 234677778777777777776543 222
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 566 KPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 566 ~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
.+.....++++|...|+.|.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 233344778888888877776655544
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.69 E-value=0.25 Score=41.74 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=57.3
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHh
Q 044628 508 TDLLGRVGLLVEAYDLLASM----PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV---NYALVSNVYAS 579 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~ 579 (665)
.....+.|++++|.+.|+.+ |..| ....-..|+.++.+.++++.|...+++.++++|.++. ++...|-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455677788888777777 3333 2334556677888888888888888888888888654 33444444555
Q ss_pred cCC---------------HHHHHHHHHHHhhC
Q 044628 580 ERC---------------WFDVARLRKMMRDN 596 (665)
Q Consensus 580 ~g~---------------~~~A~~~~~~m~~~ 596 (665)
... ..+|...|+.+..+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 443 55666666665543
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.67 E-value=0.06 Score=54.43 Aligned_cols=62 Identities=13% Similarity=-0.038 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRS----DTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666654 455542 23566666666666666666666666655
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.67 E-value=0.91 Score=41.92 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHh
Q 044628 405 LINAYSKCGSIAGALQCFGSVKE--PD----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS--IAFLEVLSACS 476 (665)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 476 (665)
....+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...+++.++. -|+. .-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 44566788999999999999873 22 235566788999999999999999999986 4443 33333333332
Q ss_pred cCCcH-------------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHH
Q 044628 477 HGGLV-------------SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGAC 543 (665)
Q Consensus 477 ~~g~~-------------~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 543 (665)
.-... .+|...|+ .++.-|-......+|...+..+...- ..--..+...|
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 22111 23333333 34444444455555555554441000 00111244668
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHH
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKP---VNYALVSNVYASERCWFDVA 587 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~ 587 (665)
.+.|.+..|..-++.+++.-|+.+ .+...++..|.+.|..+.|.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 889999999999999999999854 34568889999999888544
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.64 E-value=1.9 Score=40.17 Aligned_cols=163 Identities=23% Similarity=0.176 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKE--PD-LVTWTSIIG-AYAFHGLSKESIEVFEKMLSHAVRP----DSIAFLE 470 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ 470 (665)
...+..+...+...++...+.+.+..... ++ ...+..... .+...|+.++|...+.+... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 33444455566666667777777776653 22 122333333 68889999999999999865 343 2234444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcC
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHG 547 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 547 (665)
....+...++.+.+...+..... .... ....+..+...+...|++++|...+... ...|+ ...+..+...+...+
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 44556778899999999999987 2333 4677888888999999999999999888 44554 445555555555777
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 044628 548 SIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 548 ~~~~a~~~~~~~~~~~p~ 565 (665)
..+.+...+++.++..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 899999999999999987
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.53 E-value=0.17 Score=42.28 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 478 (665)
..++.+++.++++.|+++....+.+..=..|+. +-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345566666777777777766666554321111 1011111 112234678899999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 044628 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 511 (665)
|++..|+++.+...+.|+++-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999888888998887643
No 237
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.43 E-value=3.1 Score=41.19 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=148.9
Q ss_pred hHHHHHHHHHhc--CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHH--hccCCcHHHHHHHHHHHHhCCCCchhH--HHH
Q 044628 230 LWNVMVSCYALN--CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC--GTLGSSKLGRQIHGLVIKQSFDLDVLV--ATS 303 (665)
Q Consensus 230 ~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 303 (665)
.|.+|-.|+... |+-..|.++-.+-.+. +..|...+..++.+- .-.|+.+.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 344444444333 3333444433332211 333444555555442 234666666666666653 222221 112
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHcCCChHHHHHHHHHHhhCC-CCCCHH--HHHHHHHHhCC-
Q 044628 304 LVDMYAKNGNIDDACRVFDGMTA--K-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGS-FCPDEV--TLASILSSCGS- 376 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 376 (665)
|.-.--+.|+.+.|...-++.-+ | -...|.+.+...+..|+++.|+++++.-+... +.++.. .-..||.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22222356677776666655543 1 23467777888888888888888887665432 334432 22223332111
Q ss_pred --CCchHhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 044628 377 --LSISCETRQVHAYAIKNGVQAFLSIE-NALINAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 377 --~~~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
..+...++..-.+..+ +.|+..-. -.-...+.+.|++.++-.+++.+-+ |....|. .|....-.+.++.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHH
Confidence 1223334433333333 23332211 1123567778888888888777653 4444433 3333333344444
Q ss_pred HHHHHHH-cCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHhC
Q 044628 452 VFEKMLS-HAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR-VGLLVEAYDLLASM 527 (665)
Q Consensus 452 ~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 527 (665)
-+++..+ ..++||. .....+..+-...|++..|..--+...+ ..|....|..|.+.-.. .|+-.++...+-+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4444433 2245654 4566667777777877777766666544 56777777777776544 37777777777766
No 238
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.39 E-value=0.054 Score=47.76 Aligned_cols=89 Identities=16% Similarity=-0.002 Sum_probs=65.2
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-C-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEP-R-----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p-~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
-+.+.|++++|..-|..+ ..-| . .+.|..-..+..+.+.++.|+....++++++|.+..+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 455667777777766665 2112 1 33344444566778888999999999999999888888888889999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 044628 583 WFDVARLRKMMRDNCD 598 (665)
Q Consensus 583 ~~~A~~~~~~m~~~~~ 598 (665)
+++|..-++++.+..+
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999998888876543
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.37 E-value=1.8 Score=44.37 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--hhHHHHHHHHHHhc
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP-I-EPR--SDTLGAFIGACKVH 546 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~ll~~~~~~ 546 (665)
+..++-+.|+.++|++.|+++.+++....+......|+..|...+++.++..++.+.. + -|. ...|++.+-..+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334444555555555555555432211122334445555555555555555555541 1 122 22333333222222
Q ss_pred CC---------------HHHHHHHHHHHHhcCCCCCc
Q 044628 547 GS---------------IGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 547 g~---------------~~~a~~~~~~~~~~~p~~~~ 568 (665)
++ ...|.++..++++.+|.-+.
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 22 23466788888888887543
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.72 Score=43.86 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=81.7
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHH---HHHHHhcCCHH
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAF---IGACKVHGSIG 550 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 550 (665)
.....|+..+|...|...... .+-+...-..|+.+|...|+.++|..++..+|.+-...-|..+ +....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888888762 2334566677888888999999999999988655444444441 22222222222
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+. ..+++-+..+|+|...-..++..|...|+.++|.+.+-.+.++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 21 2244556778999999999999999999999998876555544
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.13 Score=48.21 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=44.4
Q ss_pred hcCChHHHHHHHHhC-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCC
Q 044628 513 RVGLLVEAYDLLASM-------PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSNVYASERC 582 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~ 582 (665)
+.|++.+|.+.|... ...|+...| |..++...|+++.|..+|..+.+-.|++ |..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555554444 122333333 4455566666666666666666544443 3445566666666666
Q ss_pred HHHHHHHHHHHhhC
Q 044628 583 WFDVARLRKMMRDN 596 (665)
Q Consensus 583 ~~~A~~~~~~m~~~ 596 (665)
-++|..+++++.++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666543
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.16 E-value=0.2 Score=46.80 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=81.2
Q ss_pred HHHHHhcCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-----------
Q 044628 418 ALQCFGSVK--EPDLVTWTSIIGAYAFH-----GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG----------- 479 (665)
Q Consensus 418 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 479 (665)
.++.|.... +.|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 57888898888888654 566777778899999999999999999999876643
Q ss_pred -----cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 044628 480 -----LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518 (665)
Q Consensus 480 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 518 (665)
.-+-++.++++|.. +|+.||-++-..|+++++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457899999987 899999999999999999988743
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.12 E-value=1.1 Score=47.32 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCh
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDS-----IAFLEVLSACSH----GGLVSEGLRYFNLMISDYHILPDS 501 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 501 (665)
....+++...-.|+-+.+++.+.+..+.+ +.-.. .+|..++..++. ....+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666677788888888887766532 22111 133444443332 45788999999999874 3776
Q ss_pred hhHHHH-HHHHHhcCChHHHHHHHHhCC-CCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH-HH
Q 044628 502 EHYTCL-TDLLGRVGLLVEAYDLLASMP-IEP-----RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA-LV 573 (665)
Q Consensus 502 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l 573 (665)
..|... ...+...|++++|++.|+++- .+. ....+--+...+....++++|...+.++.+.+.-+...|. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 655433 456778899999999999761 111 2333444556677889999999999999997766555554 56
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHhhC
Q 044628 574 SNVYASERCW-------FDVARLRKMMRDN 596 (665)
Q Consensus 574 ~~~y~~~g~~-------~~A~~~~~~m~~~ 596 (665)
+-+|...|+. ++|.++++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 7778888998 8888888887653
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.04 E-value=0.35 Score=49.29 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 044628 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 444 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 523 (665)
.+...-+++-++..+ +.||..+-..++ +-..+..+.++.++|++..+. | ...+..- ......|. ..+.
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e~ 249 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWEA 249 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhhh
Confidence 445555566666665 467765544333 233455678899999888762 1 1011000 00011111 1111
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 044628 524 LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS--KPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKV 601 (665)
Q Consensus 524 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 601 (665)
+.+-..+|-..+=..|..++++.|+.++|++.++.+++..|. +..+...|++.|...+++.|+..++.+-.+....|.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 111122333444456777888999999999999999987775 456778999999999999999999988766555555
Q ss_pred CceeE
Q 044628 602 PGCSW 606 (665)
Q Consensus 602 ~~~s~ 606 (665)
..++|
T Consensus 330 Ati~Y 334 (539)
T PF04184_consen 330 ATICY 334 (539)
T ss_pred HHHHH
Confidence 54444
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.89 E-value=0.25 Score=42.85 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCChh
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS----DYHILPDSE 502 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 502 (665)
..++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 334445555566666666666555541 22444555556666666666666655554432 235555544
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.85 E-value=1.7 Score=37.18 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=57.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 044628 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCL 243 (665)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (665)
....++..+...+.......+++.+.+.+ ..+....|.++..|++.+. .+....++. ..+......+++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34567777777778888888888888877 3677888888888887643 344444442 2233444456666666666
Q ss_pred chHHHHHHHHH
Q 044628 244 GDGAIAVFNLM 254 (665)
Q Consensus 244 ~~~A~~~~~~m 254 (665)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=94.78 E-value=0.43 Score=41.32 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCH
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIE-PRSDTLGAFIGACKVHGSI 549 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~ 549 (665)
..-+.+.|++++|..+|+-+.. ++ .-+..-|..|..++-..|++++|++.|..+ -+. -|+...--...++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3345567888888888888776 22 234556677777888888888888888776 111 2333344455677788889
Q ss_pred HHHHHHHHHHHhcCCC
Q 044628 550 GLAKWAAEKLLELEPS 565 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~ 565 (665)
+.|+..|+.+++ .|.
T Consensus 122 ~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 122 AKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHh-Ccc
Confidence 999988888887 344
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.69 E-value=0.059 Score=32.92 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45777777888888888888888888888886
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.65 E-value=0.27 Score=45.97 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=72.5
Q ss_pred HHHHHhccC--CCCchhHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC-----------
Q 044628 216 ARRVFDEVL--CRDLVLWNVMVSCYALN-----CLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG----------- 277 (665)
Q Consensus 216 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 277 (665)
.++.|...+ ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 56777777777777654 455666677788888899999999999988865543
Q ss_pred -----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044628 278 -----SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313 (665)
Q Consensus 278 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 313 (665)
+-+.+..++++|...|+-||..+-..|++++.+.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234577888888888888888888888888877665
No 250
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.64 E-value=0.074 Score=50.85 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=81.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCC
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGS 548 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 548 (665)
.+-|.++|.+++|+.+|..... +.| |.+.+..-..+|.+..++..|+.-.+.+ .+.- -...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 5668889999999999988765 456 8888888888999999998887766655 2111 12344444455556788
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
..+|.+-++.+++++|++. -|-..|++..-..|+.-+.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~Ks 220 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATKS 220 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhhc
Confidence 9999999999999999953 455555555556665555443
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.61 E-value=0.088 Score=32.05 Aligned_cols=32 Identities=28% Similarity=0.112 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777778888888888887777764
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.58 E-value=0.25 Score=40.39 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-C-Chh---HHHHHHHHHHhcC
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIE-P-RSD---TLGAFIGACKVHG 547 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p-~~~---~~~~ll~~~~~~g 547 (665)
+.+..|+++.|++.|.+... -.+-....||.-..++--+|+.++|++-+++. ... | .-. .|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667777777777777765 23345667777777777777777777777766 111 1 111 2222334567788
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 044628 548 SIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 548 ~~~~a~~~~~~~~~~~p~ 565 (665)
+.+.|+.-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888887777665544
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.53 E-value=1.3 Score=37.93 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHhCCCCCChhHHHHHHHHH
Q 044628 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV-GLLVEAYDLLASMPIEPRSDTLGAFIGAC 543 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 543 (665)
...+++.|.+.+.++++.-++..+.. |...++.+... ++.+.|.+++.+- .+...|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33345555555555555555544422 12223333333 5555555555542 1344555555444
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=1.2 Score=42.97 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCcHHHH
Q 044628 412 CGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFL----EVLSACSHGGLVSEG 484 (665)
Q Consensus 412 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a 484 (665)
.|+.-+|...++++.+ .|..+|+--=.+|..+|+.+.-...+++.... ..||...|. .+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3455555555554442 45555555555666666655555555555543 233332211 111233445555666
Q ss_pred HHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 485 LRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 485 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
.+.-++..+ +.| |.-.-.++...+.-.|+..|+.++..+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555443 222 2223334444455556666666655544
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.32 E-value=1.4 Score=37.23 Aligned_cols=112 Identities=15% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRP--DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 517 (665)
..+.|++++|.+.|+.+...-... ....-..++.++.+.|++++|...+++.++-+--.|+ ..|.....+++.-...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHHh
Confidence 344555555555555555531100 1123444555555555555555555555553222222 2233333333322221
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 518 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
+..+.-+- ..+ +..+....|...|+++++.-|++.
T Consensus 99 ~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 99 EGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111111 111 112235678888999999999853
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=3.4 Score=39.45 Aligned_cols=175 Identities=13% Similarity=0.005 Sum_probs=113.3
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 044628 417 GALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH 496 (665)
Q Consensus 417 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 496 (665)
...+.+++...+....--.-.......|+..+|..+|....... .-+...-..+..++...|+++.|..++..+..+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~- 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA- 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-
Confidence 33444455444322222223345677889999999999888853 2234566677888899999999999998875521
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHH
Q 044628 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELE--PSKPVNYALV 573 (665)
Q Consensus 497 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 573 (665)
-.........-+..+.++....+..++-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -++..+-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122234567777777777777777775566 45556667777888899999888877777654 3466777788
Q ss_pred HHHHHhcCCHHH-HHHHHHHH
Q 044628 574 SNVYASERCWFD-VARLRKMM 593 (665)
Q Consensus 574 ~~~y~~~g~~~~-A~~~~~~m 593 (665)
..++...|.-+. +.+.++++
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 888888875444 44445554
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=4.4 Score=37.46 Aligned_cols=85 Identities=11% Similarity=-0.018 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-------CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASMP-------IEPRS-DTLGAFIGACKVHGSIGLAKWAAEKLLEL----EPSKPVNYAL 572 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 572 (665)
.....+|.|..+++||-..|.+-. ..|+. ..+.+.+-.+....++..|++.++.--++ .|++..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445666666666665554431 11221 12333333444455777777777765442 3445555555
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 044628 573 VSNVYASERCWFDVARLR 590 (665)
Q Consensus 573 l~~~y~~~g~~~~A~~~~ 590 (665)
|...| ..|+.+++.++.
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 55555 456666665553
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.48 Score=45.51 Aligned_cols=160 Identities=14% Similarity=-0.046 Sum_probs=114.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCC
Q 044628 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT----CLTDLLGRVGL 516 (665)
Q Consensus 441 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 516 (665)
--+|+..+|...++++.+. .+.|...+.-.=.+|...|..+.-...++++... -.|+...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888899999999886 4557778888888999999999999999888763 345554443 33445668999
Q ss_pred hHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCHHHHHHHH
Q 044628 517 LVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS----KPVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 517 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
+++|++.-++. .++| |.=.-.++.......|+..+|.+...+--..=.+ -.-.|-..+-.|.+.+.++.|.+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888 5555 3444455666777888999998887765432221 1234556777788889999999999
Q ss_pred HHHhhCCCccCCc
Q 044628 591 KMMRDNCDHKVPG 603 (665)
Q Consensus 591 ~~m~~~~~~~~~~ 603 (665)
+.-.-+...|..+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7765555555544
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.16 E-value=4.8 Score=37.72 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKP---VNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+..-|.+.|.+..|..-++.+++--|+.+ .++..+..+|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34667888888888888888888766543 44567777888889888888887766544
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=0.49 Score=44.50 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHH
Q 044628 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS----IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS-EHYTCL 507 (665)
Q Consensus 433 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 507 (665)
|+.-+.. .+.|++.+|...|...++.. |+. ..+--|..++...|+++.|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444433 34555667777776666642 221 133445666666666666666666666655444432 445555
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 044628 508 TDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~ 527 (665)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555554
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.55 E-value=7.9 Score=37.77 Aligned_cols=61 Identities=8% Similarity=-0.022 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-C--ChhHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 044628 404 ALINAYSKCGSIAGALQCFGSVKE-P--DLVTWTSIIGAY---AFHGLSKESIEVFEKMLSHAVRPDS 465 (665)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 465 (665)
.-++.+.+.++.+.+.+++.+|.. . ....+..++..+ ..+ ....|...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 334455556666666666666652 1 223444444433 332 234555555555554444443
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.51 E-value=8.7 Score=38.95 Aligned_cols=151 Identities=13% Similarity=0.003 Sum_probs=83.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--h
Q 044628 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP---DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD--S 501 (665)
Q Consensus 427 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 501 (665)
.....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|+..++..... .+..+ .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3455678888888899999999999888887743221 2233333445556678888888888777661 11111 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHH-HHhCCCCCChhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDL-LASMPIEPRSDTLGAFIGACKVH------GSIGLAKWAAEKLLELEPSKPVNYALVS 574 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 574 (665)
.....+...+.. ..+..... ........-...+..+...+... ++.+.+...++.+.++.|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111100 00000000 00000000012233333333344 7889999999999999999888888777
Q ss_pred HHHHhc
Q 044628 575 NVYASE 580 (665)
Q Consensus 575 ~~y~~~ 580 (665)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 776543
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.48 E-value=12 Score=39.56 Aligned_cols=120 Identities=13% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhHHHHHH-HH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM--PIEPRSDTLGAFI-GA 542 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll-~~ 542 (665)
.+|...+.--...|+.+...-+|+...- -+.--.+.|-..+.-....|+.+-|..++.+. -..|+......+- ..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4666666666777777777777776654 12223455666666666667777777766665 1122222222222 23
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 044628 543 CKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVA 587 (665)
Q Consensus 543 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 587 (665)
+-..|+...|..+++.+.+--|....+-..-+++..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 455678888888888877655775555556666777777777777
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.48 E-value=7.1 Score=39.31 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---Cc----hhHHHHHHHHHc---CCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 044628 304 LVDMYAKNGNIDDACRVFDGMTAK---NV----VSWNTMVVGFGQ---NGDGREAVKLLRDMLQGSFCPDEVTLASIL 371 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 371 (665)
|+-.|-...+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+....-.++..|+..+-
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 333455666666666666666542 11 111122334444 667777777777754444455555554443
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.31 E-value=7.2 Score=36.61 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=107.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HH
Q 044628 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEP------DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPDS--IA 467 (665)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t 467 (665)
|-...|+--+ .-.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....-. .||. +.
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 4444555444 345679999999999999742 223444566678899999999999999988532 3333 34
Q ss_pred HHHHHHHHhcC----Cc---HHHHHHHHHHHHHhcCC---CCChh------------hHHHHHHHHHhcCChHHHHHHHH
Q 044628 468 FLEVLSACSHG----GL---VSEGLRYFNLMISDYHI---LPDSE------------HYTCLTDLLGRVGLLVEAYDLLA 525 (665)
Q Consensus 468 ~~~ll~a~~~~----g~---~~~a~~~~~~~~~~~~~---~p~~~------------~~~~l~~~~~~~g~~~~A~~~~~ 525 (665)
|...+..+... .+ ..+|..-|+..+.++.- .||+. +=..+.+.|.+.|.+..|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 44444433332 22 34566666666664311 12221 11234456889999999999888
Q ss_pred hC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 526 SM-PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 526 ~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
+| ..-|+ ...+-.+..+|...|-.++|....+-+-..-|+++
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 88 22222 33445566889999999999888776655556653
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=28 Score=43.18 Aligned_cols=63 Identities=8% Similarity=-0.065 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
..+|....+.++..|.++.|..+.-.+.+..+ +.++.-.+..+...|+-..|..+.+...+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56799999999999999999999888888775 5789999999999999999999999887654
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.18 E-value=1.2 Score=47.01 Aligned_cols=143 Identities=20% Similarity=0.168 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHH----hcCChHHH
Q 044628 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS-----EHYTCLTDLLG----RVGLLVEA 520 (665)
Q Consensus 450 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~----~~g~~~~A 520 (665)
.-+|.-+... ++| .+..+++...-.|+-+.|++.+....+..++.-.. -.|..++..+. .....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555553 333 34556666777899999999999877643333221 12333333332 35678899
Q ss_pred HHHHHhC-CCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 521 YDLLASM-PIEPRSDTLGAFI-GACKVHGSIGLAKWAAEKLLELEPS----KPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 521 ~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
.++++.+ ..-|+...|.-.- +.++..|+.+.|++.++++++.... ..-.+.-+++.+.-.++|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999 6678888776655 5578899999999999988753322 23456688999999999999999999998
Q ss_pred hC
Q 044628 595 DN 596 (665)
Q Consensus 595 ~~ 596 (665)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 75
No 268
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=16 Score=39.80 Aligned_cols=101 Identities=10% Similarity=-0.012 Sum_probs=66.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 044628 170 RACVQADDIEVGRRLHSFILKVGFGL---NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246 (665)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (665)
+.+.+.+.+++|...-+... |..+ -..++..+|+.+.-.|++++|-...-.|...+..-|.-.+..+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34445556666665544332 2333 356788889999999999999999999988888889888888888887765
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 044628 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275 (665)
Q Consensus 247 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 275 (665)
...++ ....-+.+...|-.+|-.+..
T Consensus 442 Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhccC---CCCCcccCchHHHHHHHHHHH
Confidence 44432 222112344556666666554
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.73 E-value=2.1 Score=44.62 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHH
Q 044628 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283 (665)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 283 (665)
.+...++|+++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ |..|+-.+...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 444566677777777665544 445677777777777777777777766532 444555555566666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044628 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 284 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (665)
++.+.....|- +|....++.-.|++++..+++.
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 66655555541 2333333444455555544443
No 270
>PRK09687 putative lyase; Provisional
Probab=92.69 E-value=10 Score=36.86 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=33.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCCh----HHHHHHHHHHhhCCCCCCHHHHHHHH
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDG----REAVKLLRDMLQGSFCPDEVTLASIL 371 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 371 (665)
+|..+.-..+..+.+.|..+....+..-+..+|...=..-+.++.+.|+. ++++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444433222222222333444444445555555542 3455555555332 24444444444
Q ss_pred HHhC
Q 044628 372 SSCG 375 (665)
Q Consensus 372 ~~~~ 375 (665)
.++.
T Consensus 113 ~aLG 116 (280)
T PRK09687 113 NATG 116 (280)
T ss_pred HHHh
Confidence 4433
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.69 E-value=2.9 Score=43.53 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=61.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 486 (665)
+...++|+++.|.++.++.. +...|..|.......|+.+-|.+.|++... |..|+--|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 45567788888877776654 566788888888888888888877776543 3344444555666655555
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCC
Q 044628 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMP 528 (665)
Q Consensus 487 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (665)
+-+..... | -++....++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 55544431 1 13333344445566666666666553
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=4.6 Score=34.97 Aligned_cols=91 Identities=16% Similarity=0.039 Sum_probs=60.8
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCH
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSE-HYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSI 549 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 549 (665)
++.-.+.++.+++..++..+.. +.|... .-..-...+.+.|++.+|+.+|+++ .-.|....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3444566788888888888865 556533 3333455678889999999999998 4445555667777777665544
Q ss_pred HHHHHHHHHHHhcCCC
Q 044628 550 GLAKWAAEKLLELEPS 565 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~ 565 (665)
..=....+++++..++
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 4445556667777664
No 273
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.68 E-value=19 Score=39.77 Aligned_cols=73 Identities=11% Similarity=0.006 Sum_probs=38.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCC
Q 044628 304 LVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 378 (665)
-+..+.+.+++++..+++.. ...+...-.....+....|+.++|....+.+-..|. ........++..+.+.|
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 34444566677766663322 223444445566667777777667666666544442 22334444554444333
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.63 E-value=0.23 Score=30.80 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 569 NYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999998844
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.41 E-value=1 Score=38.94 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=35.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
...++.+.++.++..+.-+.|+.+..-..-++++...|+|++|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 445566666666666666777766666666667777777777777776665543
No 276
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=19 Score=39.23 Aligned_cols=164 Identities=9% Similarity=0.074 Sum_probs=91.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCchHHH
Q 044628 74 AKFGFLQQGKQLHSHIMKLGLCN---KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYF 150 (665)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 150 (665)
.+.+.+++|..+-.... |..+ -..++...|+.|.-.|++++|-.+.-.|-..+..-|..-+.-++..++.. .++
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~-~Ia 443 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT-DIA 443 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc-hhh
Confidence 34455555555443322 3333 34578889999999999999999998888888888888887777666543 333
Q ss_pred HHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchh
Q 044628 151 RRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVL 230 (665)
Q Consensus 151 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 230 (665)
.-++...-+.+...|..+|..+.. ..-..+++...+. +++...-...+++ ...-+++-.+ +...
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa---------~~~q~~q~Se-~~~L 507 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISA---------TEPQIKQNSE-STAL 507 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhh---------cchHHHhhcc-chhH
Confidence 334433334566778888877766 2222333333221 2222222222111 0111111111 1112
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH
Q 044628 231 WNVMVSCYALNCLGDGAIAVFNLMRL 256 (665)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (665)
-..|..-|...+++..|+.++-..++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 22377777788888888887766543
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.40 E-value=5.5 Score=33.04 Aligned_cols=118 Identities=8% Similarity=0.024 Sum_probs=55.9
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC---------------------CCCchh
Q 044628 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL---------------------CRDLVL 230 (665)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------~~~~~~ 230 (665)
..-.|.++++.++.....++. +..-+|-+|--....-+-+...++++.+- ..+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 345678888888888887764 33333333221222222222333333221 112223
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 044628 231 WNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS 293 (665)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 293 (665)
.+..+..++..|+-++-.+++.++.+. -.++......+..||.+.|+..++.+++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344455566666666666666665532 24555566666666666666666666666666655
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.03 E-value=27 Score=40.12 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=48.8
Q ss_pred HHHHHcCCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044628 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDEV--TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413 (665)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 413 (665)
+.+|..+|+|++|+.+-.+|... -|.. +--.|.+-+...+..-+|-++..+.... + .-.+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence 34456678888888887776431 1221 1134555566666666665555443321 1 23455677888
Q ss_pred CHHHHHHHHhcCCCCCh
Q 044628 414 SIAGALQCFGSVKEPDL 430 (665)
Q Consensus 414 ~~~~A~~~~~~~~~~~~ 430 (665)
.+++|.++-......|.
T Consensus 1041 ~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1041 EWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHHHHhcccchH
Confidence 88888877766554333
No 279
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.01 E-value=19 Score=38.15 Aligned_cols=181 Identities=14% Similarity=0.062 Sum_probs=122.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
+...|+..++.-.+.|+.+.+.-+|++..- .-...|-..+.-.-..|+.+-|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456777778888888999999988888763 23345555555555558888888877776664333222322222233
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHH---HHHHhC-CCCCChhHHHHHH----H-HHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAY---DLLASM-PIEPRSDTLGAFI----G-ACK 544 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll----~-~~~ 544 (665)
+-..|+.+.|..+++.+..+ . |+. ..-..-+....|.|..+.+. +++... +..-+..+...+. . -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56678999999999999885 3 553 33334456677889888888 555554 2222333333322 1 234
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
..++.+.|..++.++.+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5678999999999999999999999999988877665
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.96 E-value=1.2 Score=37.86 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
...++.+.++.++..+.-+.|+.+..-..-+.++...|+|+||.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888888888888888888888888888888888888887665
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.56 E-value=0.34 Score=31.69 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 567 PVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 567 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
|.++..++..|.+.|++++|++++++..+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999987643
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.54 E-value=0.33 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666777777777777777777777774
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.49 E-value=25 Score=38.68 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHh---
Q 044628 235 VSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF-DLDVLVATSLVDMYAK--- 310 (665)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~--- 310 (665)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+....- .+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998877 3334567777777776654433222211 22222110 1111446677777776
Q ss_pred cCCHHHHHHHHhccCC
Q 044628 311 NGNIDDACRVFDGMTA 326 (665)
Q Consensus 311 ~g~~~~A~~~~~~~~~ 326 (665)
..+..+|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3567777777766543
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.44 E-value=7.9 Score=39.26 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS----KPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
...+|..+...|+++|+++.|...+.++.+.++. .+.....-+..+...|+-++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4668999999999999999999999999886522 456777789999999999999999887776
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.39 E-value=4.7 Score=39.50 Aligned_cols=93 Identities=13% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCc-
Q 044628 415 IAGALQCFGSVKE-------PDLVTWTSIIGAYAFHGL----SKESIEVFEKMLSHAVRPDSI--AFLEVLSACSHGGL- 480 (665)
Q Consensus 415 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~- 480 (665)
..+|..+|+.|++ ++-..+..|+.. ..++ .+.+..+|+.+.+.|+..+.. ....+|..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445556666653 333444444433 2222 356777888888888877543 34444443333222
Q ss_pred -HHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 044628 481 -VSEGLRYFNLMISDYHILPDSEHYTCLTDL 510 (665)
Q Consensus 481 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 510 (665)
+..+.++++.+.+ .|+++...+|..+.-+
T Consensus 197 ~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 4578888888887 5999888888765433
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=27 Score=38.53 Aligned_cols=53 Identities=13% Similarity=-0.065 Sum_probs=36.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044628 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL 560 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 560 (665)
++..+....+.+++..+.+..+-. |+..|..++..+.+.+.++.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 445566677788888888877533 77888888888888886665555555444
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.13 E-value=34 Score=39.43 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=65.9
Q ss_pred CCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC----CCCchHhHHHHH
Q 044628 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG----SLSISCETRQVH 387 (665)
Q Consensus 312 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~ 387 (665)
+++++|+.-+..+. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+ ..+.++.|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56777777776665 334555555566788888888775 467666665554433 333444443333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhH--HHHHHHHHHhcCChHHHHHHHHHHH
Q 044628 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEP-DLVT--WTSIIGAYAFHGLSKESIEVFEKML 457 (665)
Q Consensus 388 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 457 (665)
...-+. .--+.+|..||+|.+|..+-.++... |... -..|+.-+...++.-+|-++..+..
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 322111 01233444555555555555544432 2211 1445555556666666655555544
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=28 Score=38.43 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=88.5
Q ss_pred cCCChHHHHHHHHHhh----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCC---Cccc
Q 044628 59 THSAHSFYSQALKVSA----KFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVR---NIVT 131 (665)
Q Consensus 59 ~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~ 131 (665)
-..+..+...+.+.|+ +.|+++.|.+-+-+.+ |+.-.. .+|.-|....+...--..++.+.+. +...
T Consensus 360 ~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh 433 (933)
T KOG2114|consen 360 QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDH 433 (933)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH----HHHHHhcCHHHHHHHHHHHHHHHHcccccchh
Confidence 3345556666666554 5788888766554443 332222 2344454444455555555555432 3334
Q ss_pred HHHHHHHHHhCCCCc-hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 044628 132 WNTLISGIINCGGNV-TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKC 210 (665)
Q Consensus 132 ~~~li~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 210 (665)
-+.|+.+|.+.++.+ +.-|-.-...|.. .+-+...+..|.+.+-.++|..+-..... ...+...+ +-..
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~ 503 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDL 503 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHh
Confidence 567889999988877 5444433334432 23356677777777777777665444332 33333344 3456
Q ss_pred CChHHHHHHHhccCCC
Q 044628 211 GFVEDARRVFDEVLCR 226 (665)
Q Consensus 211 g~~~~A~~~~~~~~~~ 226 (665)
|++++|.+.+..++-+
T Consensus 504 ~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 504 HNYEEALRYISSLPIS 519 (933)
T ss_pred cCHHHHHHHHhcCCHH
Confidence 8899999999998754
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.02 E-value=12 Score=34.07 Aligned_cols=180 Identities=17% Similarity=0.042 Sum_probs=104.6
Q ss_pred HhcCCHHHHHHHHhcCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHH
Q 044628 410 SKCGSIAGALQCFGSVK--EP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGL 485 (665)
Q Consensus 410 ~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 485 (665)
-..|-+.-|+--|.... .| -...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++.-|.
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhH
Confidence 33444444554454433 23 3456787877788889999999999988875 332 233333333456678888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044628 486 RYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL-LASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564 (665)
Q Consensus 486 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 564 (665)
+=|...-++-.-.|-...|- ..-.+.-++.+|..- .++. ...|..-|+..+-.+.- |++. -+.+++++.+-..
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 77766654322222222222 222344456666643 4444 23455667766544322 2211 1223333333222
Q ss_pred CC-------CchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 565 SK-------PVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 565 ~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
++ +.+|..|+.-|...|..++|..+|+......
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22 4678899999999999999999999876543
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.75 E-value=6.9 Score=34.38 Aligned_cols=134 Identities=7% Similarity=0.035 Sum_probs=83.9
Q ss_pred hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC--ChHHHHHHHhccC
Q 044628 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCG--FVEDARRVFDEVL 224 (665)
Q Consensus 147 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 224 (665)
++.++.+.+.|++|+...+..++..+.+.|++.. +.++++.++-+|.......+-.+.... -..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4455666778899999999999999999887654 444556666666554443332222211 1334444444433
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 044628 225 CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQ 292 (665)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 292 (665)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...--.++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677788899999999999988775332 2233345666666666666666666655554
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.52 E-value=1.7 Score=41.58 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLS-----HAVRPDSIAFLEV 471 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 471 (665)
.++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556788889999999999988888763 5778999999999999999999999988876 5777777665555
Q ss_pred HHH
Q 044628 472 LSA 474 (665)
Q Consensus 472 l~a 474 (665)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.49 E-value=4.7 Score=39.47 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=101.9
Q ss_pred hcCCHHHHHHHHhccCCC------CchhHHHHHHHHHcCCChHHHHHHHHHHhhC--CCCCCH---HHHHHHHHHhCCCC
Q 044628 310 KNGNIDDACRVFDGMTAK------NVVSWNTMVVGFGQNGDGREAVKLLRDMLQG--SFCPDE---VTLASILSSCGSLS 378 (665)
Q Consensus 310 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~~~~~~~ 378 (665)
...+.++|+..+.+..++ ...++..+..+.++.|.+++++..--.-+.. ...-.. ..|..+-+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554432 2245666667777777777665532211110 001111 11222222222222
Q ss_pred chHhHHHHHHHHHH-hCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHhcCC
Q 044628 379 ISCETRQVHAYAIK-NGVQA---FLSIENALINAYSKCGSIAGALQCFGSVKE---------PDLVTWTSIIGAYAFHGL 445 (665)
Q Consensus 379 ~~~~a~~i~~~~~~-~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~ 445 (665)
++.+++++-..-.. .|..+ ...+.-.+..+..-.+.++++++.|+...+ -....+-.|-+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 22222222221111 11111 112223344555555666666666665431 123456666777777777
Q ss_pred hHHHHHHHHHHHHc--CCCCCH--H-----HHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCC-ChhhHHHHHHHHH
Q 044628 446 SKESIEVFEKMLSH--AVRPDS--I-----AFLEVLSACSHGGLVSEGLRYFNLMISD---YHILP-DSEHYTCLTDLLG 512 (665)
Q Consensus 446 ~~~A~~~~~~m~~~--g~~p~~--~-----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~ 512 (665)
+++|+-+..+..+. .+..+. . ....+.-++...|.+..|.+.-++..+- .|-.+ ......++.|.|-
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 77777666555441 112111 1 1222334555666666666666655441 12211 1334456667777
Q ss_pred hcCChHHHHHHHHhC
Q 044628 513 RVGLLVEAYDLLASM 527 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~ 527 (665)
..|+.|.|..-|+.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 777777776666654
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.48 E-value=0.81 Score=44.09 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=61.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV- 514 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 514 (665)
.+-|.+.|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..=....+. .| ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4579999999999999998876 467 889999999999999888877776665554 11 2335556554
Q ss_pred ------CChHHHHHHHHhC-CCCCChh
Q 044628 515 ------GLLVEAYDLLASM-PIEPRSD 534 (665)
Q Consensus 515 ------g~~~~A~~~~~~~-~~~p~~~ 534 (665)
|...||.+-++.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 5555665555555 5677643
No 294
>PRK09687 putative lyase; Provisional
Probab=90.47 E-value=18 Score=35.21 Aligned_cols=74 Identities=14% Similarity=-0.006 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
+..+-...+.++++.|+..-.-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 44444555556666666432223333333333 233566677777764 677777777664 446555555555543
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.02 E-value=5.6 Score=40.45 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHH
Q 044628 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIE-PRSDTLGAFIGACKVHGSIGLAK 553 (665)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 553 (665)
.+.|+++.+.+.+....+ -+.....+..+++..+.+.|++++|..+-+.| +.+ .++.+...-..+....|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 444555555555544433 22333444445555555555555555554444 111 12222222222333444445555
Q ss_pred HHHHHHHhcCCC
Q 044628 554 WAAEKLLELEPS 565 (665)
Q Consensus 554 ~~~~~~~~~~p~ 565 (665)
..+++++.++|.
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 555555554443
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=15 Score=33.97 Aligned_cols=95 Identities=9% Similarity=-0.026 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHhC-----CCCCChhHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCc-----
Q 044628 503 HYTCLTDLLGRV-GLLVEAYDLLASM-----PIEPRSDTLGAFIG---ACKVHGSIGLAKWAAEKLLELEPSKPV----- 568 (665)
Q Consensus 503 ~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~----- 568 (665)
++-.+...|... .+++.|+..|+.. +-+.+...-.+++. .-...+++.+|+.+|+++....-+++-
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 344455555544 5667777777666 22333334444443 345678899999999998765544432
Q ss_pred -hHHHHHH-HHHhcCCHHHHHHHHHHHhhCC
Q 044628 569 -NYALVSN-VYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 569 -~~~~l~~-~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
-|..-+- ++.-.++.-.+...+++-.+..
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 2222222 3333366666666666665543
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.51 E-value=6.4 Score=34.37 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC
Q 044628 303 SLVDMYAKNGNIDDACRVFDGMT 325 (665)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~~~ 325 (665)
+|.-+-.|.|++.+|.+.|..+.
T Consensus 172 ALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHH
Confidence 33333444455555555554443
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.44 E-value=14 Score=32.46 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCchHHHHHhhhCCCCCCcc
Q 044628 84 QLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHI 163 (665)
Q Consensus 84 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~m~~~g~~p~~~ 163 (665)
+..+.+.+.|++++..++..+|+.+.+.|.+.....++.. ++-||..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---------------------------------~Vi~DSk 61 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---------------------------------HVIPDSK 61 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---------------------------------cccCCcH
Confidence 3344455667888888888888888888877666555443 3444444
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 044628 164 TFNSLLRACVQADDIEVGRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNC 242 (665)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 242 (665)
.....+-.+.. ....+.++=-.|.+. | ..+..++..+...|++-+|.++.+....-+...-..++.+-.+.+
T Consensus 62 ~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~ 134 (167)
T PF07035_consen 62 PLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSN 134 (167)
T ss_pred HHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcC
Confidence 44444433322 223344443333332 1 134566777888999999999988865555556667777777777
Q ss_pred CchHHHHHHHHHHH
Q 044628 243 LGDGAIAVFNLMRL 256 (665)
Q Consensus 243 ~~~~A~~~~~~m~~ 256 (665)
+...=..+|+-..+
T Consensus 135 D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 135 DDQLFYAVFRFFEE 148 (167)
T ss_pred CHHHHHHHHHHHHH
Confidence 76655555554444
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.39 E-value=0.63 Score=28.81 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667777788888888888888875543
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.33 E-value=0.53 Score=26.61 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHH
Q 044628 568 VNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988775
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.16 E-value=16 Score=32.74 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH-----HHHHHhcCChHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFL--EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL-----TDLLGRVGLLVEA 520 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A 520 (665)
+.....+++....-.....++. .+...+...|++++|...++.... .|..+.+..+ .......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555556666542111112222 234567788999999988887765 2444444444 4567788999999
Q ss_pred HHHHHhCCCCCChhHHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 521 YDLLASMPIEPRSDTLGAF-----IGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
+..++... ...|.++ ...+...|+.++|+..|+++++.+++
T Consensus 146 L~~L~t~~----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998762 2223332 36688889999999999999988754
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.80 E-value=9.2 Score=37.52 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhCCCCCCH--HHHHHHHHHhCCCCc--hHhHHHHHHHHHHhCCCCchhHHHHHH
Q 044628 346 REAVKLLRDMLQGSFCPDE--VTLASILSSCGSLSI--SCETRQVHAYAIKNGVQAFLSIENALI 406 (665)
Q Consensus 346 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~--~~~a~~i~~~~~~~g~~~~~~~~~~li 406 (665)
+.+...|+.+.+.|...+. ...+.+|..+..... ...+..++..+.+.|++.....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4455667777766655432 334444444433333 335666777777777776666655443
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.88 E-value=6.8 Score=39.70 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=51.3
Q ss_pred ChhHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q 044628 532 RSDTLGAFI---GACKVHGSIGLAKWAAEKLLELEPS-KPVNYALVSNVYA-SERCWFDVARLRKMMRD 595 (665)
Q Consensus 532 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~~ 595 (665)
|...|.++. ....+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344455554 5677889999999999999999999 8888888889888 77888888888776654
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.84 E-value=0.83 Score=27.53 Aligned_cols=29 Identities=3% Similarity=-0.010 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..+..++.+|...|++++|++.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999988754
No 305
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.58 E-value=36 Score=34.78 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKE-----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA-FLEVL 472 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 472 (665)
..++..++..-.+..-++.|+.+|-+..+ +++..++++|.-++. |+...|..+|+--... -||... ..-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 44566677777777788889999987764 677888888887764 6778888898876654 455543 34455
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcC
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPD--SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGACKVHG 547 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g 547 (665)
.-+...++-+.|..+|+..+. .+..+ ...|..|++-=..-|++..|..+=+++ ..-|...+...+.+-|....
T Consensus 474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 666778888999999997665 23334 567889999888999999998887777 45566655555555554443
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.47 E-value=12 Score=33.44 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI--AFLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 433 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...|++..+.....++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444555555555555555555443333332 23444444455555555555444443
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.35 E-value=2.6 Score=40.40 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 537 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
..++.++...|+.+.+...++++++.+|-+-..|..+...|.+.|+...|+..++++.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444445555555555555555666655555555566666666666666555555543
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.31 E-value=2.1 Score=37.72 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
+++|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4566677777888888888888888888876653
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.28 E-value=5.2 Score=35.84 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHH
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVKEP------DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS---IAFLE 470 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ 470 (665)
..+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+....--.+.. ..-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677889999999999999999998753 2346777888888999999999888877663222221 11111
Q ss_pred HHH--HHhcCCcHHHHHHHHHHHHH
Q 044628 471 VLS--ACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 471 ll~--a~~~~g~~~~a~~~~~~~~~ 493 (665)
+.. ++...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 23345666666666665544
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.14 E-value=25 Score=32.55 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHHHHhcC-CCCChhhHHHHH---HHHHhcCChHHHHHHHHhC---CCCCChhHHHH---HH--HHHHhc
Q 044628 479 GLVSEGLRYFNLMISDYH-ILPDSEHYTCLT---DLLGRVGLLVEAYDLLASM---PIEPRSDTLGA---FI--GACKVH 546 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll--~~~~~~ 546 (665)
.++++|+..|+..-+=+. -..+...--|++ +.-+..|++.+|+++|++. ....+..-|.. ++ ..|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455666666665544111 112222223443 3446788999999999887 33333333432 22 234444
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCc
Q 044628 547 -GSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 547 -g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
.+.-.+...+++-.+++|.-..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccc
Confidence 6888888999999999998443
No 311
>PRK10941 hypothetical protein; Provisional
Probab=87.05 E-value=4.8 Score=38.74 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+.|-.++...++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566788999999999999999999999999888889999999999999999888776654
No 312
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.63 E-value=0.45 Score=45.96 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=68.9
Q ss_pred hcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 044628 513 RVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
..|.+++|++.|... +..|. ...+..-.+++.+.++...|++-+..+++++|+.+.-|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356678888877776 55554 4445555567778888888888889999999998888888888888889999999988
Q ss_pred HHHhhCCCccCC
Q 044628 591 KMMRDNCDHKVP 602 (665)
Q Consensus 591 ~~m~~~~~~~~~ 602 (665)
....+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888877765443
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.49 E-value=0.97 Score=27.34 Aligned_cols=30 Identities=10% Similarity=-0.009 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999887643
No 314
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=2.6 Score=38.78 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=38.3
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHHHHHH-HhcCCHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDSE-HYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAFIGAC-KVHGSIGL 551 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~ 551 (665)
|.....++.|+..|.+.+. +.|+.. .|..=+-.+.+..+++.+.+--.+. .+.|+.+--..+++.+ .....++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4444455555555555443 345442 2333344444555555554433333 4445544433333332 33344555
Q ss_pred HHHHHHHHH
Q 044628 552 AKWAAEKLL 560 (665)
Q Consensus 552 a~~~~~~~~ 560 (665)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555555553
No 315
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.32 E-value=29 Score=37.76 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=62.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPDSI---AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 516 (665)
|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-.+ .++...++-. .--.|-.+++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq~-------------IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQQ-------------IGMKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHHH-------------HHHHHHHHhhccch
Confidence 4445556778888888776 477664 35555544322 1222222111 11134456789998
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 517 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
++.-.+.++-. ..+.+..-.+++.+|.++.++++++.|..
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 88877776643 34556667789999999999999998863
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.23 E-value=15 Score=34.08 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=9.1
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 044628 438 GAYAFHGLSKESIEVFEKML 457 (665)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~ 457 (665)
.+|...+++++|...+.+..
T Consensus 39 vafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHhhccHHHHHHHHHHHH
Confidence 34444444555544444443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.85 E-value=68 Score=35.45 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=89.4
Q ss_pred HhcCCHHHHHHHHhcCCC-----CC-----hhHHHHHHHH--HHhcCChHHHHHHHH--------HHHHcCCCCCHHHHH
Q 044628 410 SKCGSIAGALQCFGSVKE-----PD-----LVTWTSIIGA--YAFHGLSKESIEVFE--------KMLSHAVRPDSIAFL 469 (665)
Q Consensus 410 ~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~ 469 (665)
+-.|++..|...++.+.+ ++ ...+...+.| +...|+.+.|+..|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345667677776666542 11 2233333333 334588888888887 444444444444443
Q ss_pred HHHHH--HhcC--CcHHH--HHHHHHHHHHhcCCCCC--hhhHHHHH-HHHHh---------cCChHHHHHHH-HhCCCC
Q 044628 470 EVLSA--CSHG--GLVSE--GLRYFNLMISDYHILPD--SEHYTCLT-DLLGR---------VGLLVEAYDLL-ASMPIE 530 (665)
Q Consensus 470 ~ll~a--~~~~--g~~~~--a~~~~~~~~~~~~~~p~--~~~~~~l~-~~~~~---------~g~~~~A~~~~-~~~~~~ 530 (665)
.+=.+ +... ...++ ..++++.+.....-.|+ ..++.+++ .++.. ...+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32111 1111 12222 66677666543233332 23333433 23321 11233444444 333211
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCC-chH-----HHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE---PSKP-VNY-----ALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 531 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
--.....++++.-.-.|+..+..........+- |+.. ..| ..+.+.|...|+.++|...+.+..
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 112223334444333677777666555554322 3322 233 255666888999999999887764
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.75 E-value=1.9 Score=25.96 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=7.1 Score=37.55 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=71.7
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044628 393 NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-P--------DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP 463 (665)
Q Consensus 393 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 463 (665)
.|......+...++..-....+++++...+-++.. + ...+| ++.+. .-++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHH-ccChHHHHHHHhCcchhcccc
Confidence 45555556666677777777788888888777652 2 22333 33322 336779999998888999999
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 464 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
|..|+..+++.+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999888777765
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.36 E-value=1.9 Score=27.42 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988765
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.30 E-value=2.4 Score=29.04 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
+.-++.+.|+++.|++..+.+++++|+|..+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445788999999999999999999999755433
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.29 E-value=1.7 Score=37.45 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=20.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHH
Q 044628 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQI 285 (665)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 285 (665)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 33334444444444444444433333344444444444444443333333
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.19 E-value=38 Score=31.99 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=132.2
Q ss_pred CCHHHHHHHHhccCC--C-----CchhHHHHHHHHHcCCChHHHHHHHHHHhh---CCCC--CCHHHHHHHHHHhCCCCc
Q 044628 312 GNIDDACRVFDGMTA--K-----NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ---GSFC--PDEVTLASILSSCGSLSI 379 (665)
Q Consensus 312 g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~~~ 379 (665)
.+.++|+.-|..+.+ + .....-.||..+.+.|++++.++.+.+|.. ..+. -...+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355556665555432 1 112334567777777777777777777643 1111 234556677776666666
Q ss_pred hHhHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------------CChhHHHHHHHH
Q 044628 380 SCETRQVHAYAIKN-----GVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---------------PDLVTWTSIIGA 439 (665)
Q Consensus 380 ~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~ 439 (665)
.+.-..+++.-.+. +-..-..+-.-|...|...|++.+-.++++++.. .-...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66655555532221 1111112224566777778888888777776641 113467777888
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHhcCCC--CC---hhhHHHHH
Q 044628 440 YAFHGLSKESIEVFEKMLSHA-VRPDSIAFLEVLSACS-----HGGLVSEGLRYFNLMISDYHIL--PD---SEHYTCLT 508 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~l~ 508 (665)
|....+-.+-..+|++...-. --|-+ ....+++-|. +.|.+++|..-|-++-+.+.-. |. .--|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888776532 23333 3445566554 4578887765443333323222 22 22356667
Q ss_pred HHHHhcCC----hHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 509 DLLGRVGL----LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAA 556 (665)
Q Consensus 509 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 556 (665)
+++.+.|- .+||. -....|.......|+.+|... +..+-++++
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 77777662 11211 012345566778888887654 444433333
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.13 E-value=6.6 Score=30.53 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 044628 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 508 (665)
+.-++.+-++.+....+.|++....+.|+||.+.+++..|.++|+.++.+.+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445666677777778899999999999999999999999999998875433 3444566554
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.10 E-value=17 Score=28.50 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 044628 177 DIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256 (665)
Q Consensus 177 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (665)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 467777777777766522 333333334567789999999999999999999999887654 56767777777777777
Q ss_pred CCCCCCHhhHH
Q 044628 257 EGMKGDYFTFS 267 (665)
Q Consensus 257 ~g~~p~~~t~~ 267 (665)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 34444443
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.97 E-value=12 Score=33.51 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=56.2
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCC
Q 044628 476 SHGGLVSEGLRYFNLMISDYHILPD-----SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGS 548 (665)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 548 (665)
...|++++|..-|..++. -+++. ...|..-..++.+.+.++.|++-..+. .+.|. ......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 344555555555555554 12221 223444445666777777777666555 44442 2222222346777788
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHH
Q 044628 549 IGLAKWAAEKLLELEPSKPVNYALVS 574 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~~~~~~l~ 574 (665)
++.|+.-|+++++++|....+--..+
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999998644433333
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.95 E-value=28 Score=31.30 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=64.5
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhHHHHHH-----HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 508 TDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFI-----GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
...+..+|++++|+.-++..--.|....+.+++ +.....|.++.|...++...+-.-. +.....-++++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCc
Confidence 355788999999999998763244444444443 5566788889888887765433221 2334578999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 044628 583 WFDVARLRKMMRDNC 597 (665)
Q Consensus 583 ~~~A~~~~~~m~~~~ 597 (665)
-++|+.-|++....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999988764
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=23 Score=37.43 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=103.0
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHH
Q 044628 410 SKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYF 488 (665)
Q Consensus 410 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 488 (665)
.-.|+++.|..++-.+++ ..-+.++.-+...|..++|+++ .+|.. -|-.. .+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHH
Confidence 345788888877766663 2345566667777887777765 34432 23322 4578888888876
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 489 NLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
.+. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+....-+-..+|
T Consensus 661 ~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 661 VEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred Hhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 554 345678999999999999999999998863 26777777778888776666655555555443
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 569 NYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
.--.+|...|++++..+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3334677889998888876543
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.77 E-value=0.66 Score=39.96 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=62.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 044628 167 SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDG 246 (665)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (665)
.++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777788888888888888877667789999999999999888888888874332 334556666777777777
Q ss_pred HHHHHHHH
Q 044628 247 AIAVFNLM 254 (665)
Q Consensus 247 A~~~~~~m 254 (665)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776665
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.40 E-value=6.8 Score=30.45 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 519 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
.++.-+-.+.+-|++.+..+-+.||++.+|+..|.++++-+...-..+...|-.+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 3444444557889999999999999999999999999997764433333444433
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.30 E-value=1.4 Score=26.25 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 570 YALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 570 ~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
+..++.+|.+.|++++|.+.++++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555666666665555543
No 332
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.15 E-value=2.2 Score=25.95 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044628 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDAC 318 (665)
Q Consensus 288 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 318 (665)
+.++.. +.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334433 556667777777777777777764
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.60 E-value=8 Score=30.44 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 518 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
..++.-+-.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|-.+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 34444445557889999999999999999999999999998875544434355544
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.24 E-value=2.6 Score=25.02 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 538 AFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 538 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
.+..++...|+.++|...++++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45566777889999999999998888863
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.07 E-value=3 Score=23.90 Aligned_cols=28 Identities=32% Similarity=0.152 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044628 537 GAFIGACKVHGSIGLAKWAAEKLLELEP 564 (665)
Q Consensus 537 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p 564 (665)
..+...+...|+.+.|...+++.+++.|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3333444444445555555544444444
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.03 E-value=6.5 Score=30.93 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5555666666677889999999999999999999999999999887544 33436766653
No 337
>PRK12798 chemotaxis protein; Reviewed
Probab=81.54 E-value=66 Score=32.82 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCcHH
Q 044628 412 CGSIAGALQCFGSVKE----PDLVTWTSIIGA-YAFHGLSKESIEVFEKMLSHAVRPDSI----AFLEVLSACSHGGLVS 482 (665)
Q Consensus 412 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 482 (665)
.|+.++|.+.+..+.. +....+-.|+.+ .....+..+|+++|++.+-. -|... ..-.-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999988873 555677777766 44567899999999998764 55442 3344455577889999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhcC---ChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 483 EGLRYFNLMISDYHILPDSEHYTC-LTDLLGRVG---LLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEK 558 (665)
Q Consensus 483 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 558 (665)
++..+-.+....+...|-...|.. ++.++.+.+ ..+.-.+++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 998888888776666665544433 333444333 3445555666663222356788888889999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHH-----hcCCHHHHHHHHHHH
Q 044628 559 LLELEPSKPVNYALVSNVYA-----SERCWFDVARLRKMM 593 (665)
Q Consensus 559 ~~~~~p~~~~~~~~l~~~y~-----~~g~~~~A~~~~~~m 593 (665)
+..+... ...-...+.+|. -..+.++|.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9987644 333334444444 234566666666554
No 338
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=63 Score=32.49 Aligned_cols=109 Identities=23% Similarity=0.320 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGA------------FIGACKVHGSIGLAKWAAEKLLELEPSK------ 566 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll~~~~~~g~~~~a~~~~~~~~~~~p~~------ 566 (665)
..|.+.+-.+|+.++|.+++.+.+++ ||++ -++.|...+|+-.|.-+.+++...--+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34556778899999999999988533 3332 2467888999999998888876432222
Q ss_pred -CchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEE
Q 044628 567 -PVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFV 617 (665)
Q Consensus 567 -~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~ 617 (665)
...|..+.......+.+-++-+.++..-..|..+....-|+++-..+-.|.
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 246888999999999999999999999888766665556876654444454
No 339
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=6.8 Score=36.29 Aligned_cols=89 Identities=10% Similarity=-0.059 Sum_probs=64.6
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCChhHHHHH-----------HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 509 DLLGRVGLLVEAYDLLASM---------PIEPRSDTLGAF-----------IGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~l-----------l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
+-+.+.|++.||..-|+++ .-+|...-|.-| -.++...|++-++++....++...|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666666555543 334554445332 23445678888999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 569 NYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+|..-+.+.+..=+.++|..-+..+.+..
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99999999999989999998888887543
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.21 E-value=14 Score=31.54 Aligned_cols=70 Identities=13% Similarity=-0.002 Sum_probs=45.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHhCCCC-CChhHHHHHHHHHHh
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSE-HYTCLTDLLGRVGLLVEAYDLLASMPIE-PRSDTLGAFIGACKV 545 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~ 545 (665)
+.-...++.+++..++..|.- +.|+.. .-..-...+.+.|++++|+.+|++..-. +....-..|+..|..
T Consensus 18 ~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 334457888999999988865 556532 2233355678889999999999998333 343444455555544
No 341
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.00 E-value=1.2e+02 Score=35.45 Aligned_cols=254 Identities=8% Similarity=-0.088 Sum_probs=118.0
Q ss_pred HHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCc
Q 044628 319 RVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAF 398 (665)
Q Consensus 319 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 398 (665)
.+...+.++|...-..-+..+.+.+. +++...+.+.... +|...-...+.++...+........+..+.+. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444455666555555666655554 3344444444432 23332233333332222111111122222221 44
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 478 (665)
..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 45545555555543311 12234445556666666666666666554322 12222 245555555555566555
Q ss_pred CcHHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 044628 479 GLVSE-GLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557 (665)
Q Consensus 479 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 557 (665)
+..+. +...+..+.+ .++...-...+.++++.|..+.+...+..+-..+|..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 3344444444 256666677777777777765554444444234455444555556655554 33444444
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 558 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
.+++ +| +..+-...+.++.+.+.-.++...+....
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4442 23 23444445555555422234554544443
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.94 E-value=9.5 Score=34.46 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=52.9
Q ss_pred HhcCChHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCHHH
Q 044628 512 GRVGLLVEAYDLLASMPIEP--RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS----KPVNYALVSNVYASERCWFD 585 (665)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~ 585 (665)
.|.|+ ++|.+.|-.+.-.| +.......+..|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44454 67777777773233 3333444445556677899999999999886533 57889999999999999988
Q ss_pred HH
Q 044628 586 VA 587 (665)
Q Consensus 586 A~ 587 (665)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.88 E-value=11 Score=38.32 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=84.6
Q ss_pred HHHHhcCCHHHHH-HHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcH
Q 044628 407 NAYSKCGSIAGAL-QCFGSVKE----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481 (665)
Q Consensus 407 ~~~~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 481 (665)
.--...|++..|. ++|..+.. |+.+...+. .+...|+++.+.+.+...... +.....+...+++..-..|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 3334567776654 44444442 444443333 356779999999988776653 445667888888888899999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhHHHHHHHHHHh
Q 044628 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI-EPRSDTLGAFIGACKV 545 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 545 (665)
++|...-+.|..+ .++ +.+....-...--..|-++++.-.+++. .+ .|...-|..+++.-.-
T Consensus 374 ~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 374 REALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred HHHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Confidence 9999998888763 232 2332222222233457788898888887 33 3455567777765433
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.82 E-value=39 Score=29.76 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=79.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH--HHHHHhcCC
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL--TDLLGRVGL 516 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~ 516 (665)
+++.|..++|+.-|.++.+.|...=++ ..........+.|+...|...|.++-.+..++--..-..-| .-++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677888888888888876543222 22233344677888999999999887753322111111111 234567888
Q ss_pred hHHHHHHHHhC--CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 517 LVEAYDLLASM--PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 517 ~~~A~~~~~~~--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
+++.....+.+ +-.| ....-.+|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888877 2223 244455676777889999999999988876
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.74 E-value=26 Score=27.60 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV 471 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 471 (665)
..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|-.+| .|...+|..=
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faag 108 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVAG 108 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 345678999999999999988999999887554 5677777777788888776 6666666543
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.44 E-value=52 Score=35.78 Aligned_cols=150 Identities=13% Similarity=-0.026 Sum_probs=74.8
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 442 FHGLSKESIEVFEKMLS-------HAVRPDSIAFLEVLSACSHGG-----LVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 442 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++....+ .| .|+....-....
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHH
Confidence 34455555555555544 33 2223344444444432 44557777766655 22 233333322222
Q ss_pred HHHh-cCChHHHHHHHHhCC--CCCChhHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCH
Q 044628 510 LLGR-VGLLVEAYDLLASMP--IEPRSDTLGAFIGACK--VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE-RCW 583 (665)
Q Consensus 510 ~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~ 583 (665)
..+. ..+...|.++|..+. -.++...+.++...+. ...+.+.|...++++-+.++ +.+...++..|.-. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccc
Confidence 2222 234567777777662 2223333332221111 23367788888888877773 34444454444433 777
Q ss_pred HHHHHHHHHHhhCCC
Q 044628 584 FDVARLRKMMRDNCD 598 (665)
Q Consensus 584 ~~A~~~~~~m~~~~~ 598 (665)
+.+.-.+..+.+.|.
T Consensus 414 ~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 414 DTALALYLYLAELGY 428 (552)
T ss_pred cHHHHHHHHHHHhhh
Confidence 777777766666554
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.17 E-value=85 Score=32.65 Aligned_cols=200 Identities=13% Similarity=-0.001 Sum_probs=86.6
Q ss_pred HHHHHhhhCCCCCCcch--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCChHHHHHHHhcc
Q 044628 148 PYFRRMLLDNVRLDHIT--FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF--VSSALVDLYGKCGFVEDARRVFDEV 223 (665)
Q Consensus 148 ~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 223 (665)
++++.+.+.|..|+... ..+.|..++..|+.+ +.+.+.+.|..++.. ...+-+...++.|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 33344444454444321 223344444555544 333444455444321 1123344455667777766666543
Q ss_pred CCCC----chhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhh--HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc
Q 044628 224 LCRD----LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT--FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297 (665)
Q Consensus 224 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 297 (665)
...+ ..-+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+.. +++.|..++
T Consensus 92 ~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~ 162 (413)
T PHA02875 92 KFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLD 162 (413)
T ss_pred CcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCC
Confidence 2211 1112 223333444544 34444555565554321 1223334445566544333 334444332
Q ss_pred hh--HHHHHHHHHHhcCCHHHHHHHHhccCCCCchh---HHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH
Q 044628 298 VL--VATSLVDMYAKNGNIDDACRVFDGMTAKNVVS---WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE 364 (665)
Q Consensus 298 ~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 364 (665)
.. ...+.+...+..|+.+-+..+++.-..++... ..+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 21 11122333455677776666665544433221 123333334455543 33444556666654
No 348
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.17 E-value=15 Score=35.55 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC-CCc-----hhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhh
Q 044628 192 GFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC-RDL-----VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT 265 (665)
Q Consensus 192 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 265 (665)
|....+.+...++..-....+++.+...+-.+.. ++. .+-.++++ ++-.-++++++.++..=.+-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 3444555556666655556677777776655532 111 11112222 2333456677777777777888888888
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 044628 266 FSSLVNSCGTLGSSKLGRQIHGLVIKQS 293 (665)
Q Consensus 266 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 293 (665)
++.+++.+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888777777666554
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.04 E-value=88 Score=32.74 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcH
Q 044628 404 ALINAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481 (665)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 481 (665)
++++.++..-+..-...+..+|.. .+-..+..++..|..+ ..++-..+|+++.+. .-|.+.+..-+.-+...++.
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~ 147 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKK 147 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhch
Confidence 334444444444444444444432 3444455555555555 345555555555553 23333333333333333555
Q ss_pred HHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCChhHHHHHHHHHHhcCCHHH
Q 044628 482 SEGLRYFNLMISDYHILPD------SEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPRSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~ 551 (665)
+.+..+|..+.. .+-|. .+.|.-++...+ .+.+.-+.+..+. +..--.+.+.-+-.-|....|+.+
T Consensus 148 sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 148 SKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred hhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 555555555543 22221 123333332221 2233333333333 222223333333344555556666
Q ss_pred HHHHHHHHHhcCCCCCch
Q 044628 552 AKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~ 569 (665)
|++++..+++.+..|..+
T Consensus 224 ai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 224 AIRILKHILEHDEKDVWA 241 (711)
T ss_pred HHHHHHHHhhhcchhhhH
Confidence 666666666555444333
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.83 E-value=2 Score=43.75 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=57.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCH
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHY-TCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSI 549 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 549 (665)
+.....+.++.|..++.++++ +.||...| ..=..++.+.+++..|+.-+.++ ...|. ...|.-=..+|...+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 344556677777777777775 56654433 33335666777777777655544 44443 22333333566667777
Q ss_pred HHHHHHHHHHHhcCCCCCch
Q 044628 550 GLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~~~~~ 569 (665)
.+|...++....+.|+++.+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHH
Confidence 77777777777777776543
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.52 E-value=66 Score=31.06 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhCCChHHHHHHHh
Q 044628 158 VRLDHITFNSLLRACVQADDIEVGRRLHSFILKV-GFGLNCFVSSALVDLYGKCGFVEDARRVFD 221 (665)
Q Consensus 158 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (665)
-.++..+..++|..++..+++..-.++++..... +...|...|..+|+.-...|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4445555555555555555555555555544443 334445555555555555555444444443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.29 E-value=8.9 Score=34.93 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
.+.-+..+.+.+++++|+...+.- .-+| |...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566788889999998877655 4556 555666777888999999999999998889998853
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.87 E-value=5.4 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLS 458 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 458 (665)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666667777777776666554
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.54 E-value=8 Score=36.85 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
++....+|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344457889999999999999999999999999999999999999998888888877754
No 355
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.47 E-value=4.9 Score=36.43 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHH
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIG 550 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 550 (665)
.|-..|.+.-|.-=|.+... +.|+ +.+||-|.--+...|+++.|.+.|+.. ...|. ..+...-.-++.--|++.
T Consensus 74 lYDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 46667888888888887765 6676 567888877888999999999999987 55553 222222223345568999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 044628 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
.|.+-+.+..+-+|+||- -.....+-.+.-+..+|..-.
T Consensus 151 LAq~d~~~fYQ~D~~DPf-R~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPF-RSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hhHHHHHHHHhcCCCChH-HHHHHHHHHhhCCHHHHHHHH
Confidence 999999999999998752 222222333444666666544
No 356
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.92 E-value=15 Score=35.82 Aligned_cols=90 Identities=11% Similarity=-0.012 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM----PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
|.-=.+-|.+..++..|.+.|.+. --.|| .+.|+.-..+-...||+..++.-..+++.++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333355688889999999999876 12233 555666666666789999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHH
Q 044628 578 ASERCWFDVARLRKMM 593 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m 593 (665)
.+..++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999977777666544
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.80 E-value=8.4 Score=29.93 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..+++.++.+|+|......++..|...|++++|.+.+-.+..+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455666677777777777777777777777777666555544
No 358
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.41 E-value=83 Score=30.62 Aligned_cols=19 Identities=26% Similarity=0.093 Sum_probs=12.6
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 044628 439 AYAFHGLSKESIEVFEKML 457 (665)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~ 457 (665)
.+.+.+++++|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677888887777443
No 359
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.04 E-value=60 Score=34.39 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPS-KPVNYALVSNVYA-SERCWFDVARLRKMMR 594 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~ 594 (665)
....+.|-+..|.+..+.++.++|. ||.....++++|+ ++.+|.=-+++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455677778888888888888887 7777777777777 5566666666666553
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.93 E-value=5.7 Score=22.30 Aligned_cols=21 Identities=33% Similarity=0.123 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLA 525 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~ 525 (665)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 361
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.84 E-value=20 Score=30.60 Aligned_cols=76 Identities=9% Similarity=0.268 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHcccC---------CCCcccHHHHHHHHHhCCCCc---hHHHHHhhhCCCCCCcchHHHH
Q 044628 101 QNQVLHVYVKCKAFDDMEKLFDEMR---------VRNIVTWNTLISGIINCGGNV---TPYFRRMLLDNVRLDHITFNSL 168 (665)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~~~~~---~~~~~~m~~~g~~p~~~t~~~l 168 (665)
.|+++.-....+.+.....+++.+. ..+-.+|++++.+.++..-.. ..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555443 234566777777775544423 6777777777777777788888
Q ss_pred HHHHhcCC
Q 044628 169 LRACVQAD 176 (665)
Q Consensus 169 l~~~~~~~ 176 (665)
|++|.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 87776653
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.55 E-value=19 Score=33.42 Aligned_cols=63 Identities=11% Similarity=-0.101 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHHhcCC--C----CCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 535 TLGAFIGACKVHGSIGL-------AKWAAEKLLELEP--S----KPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+.-+...|+..|+.+. |.+.|+++++.+. . ......++|.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44445566777777544 4444555554332 2 23566789999999999999999999987654
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.40 E-value=85 Score=30.21 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 397 AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
-+......+...|.+.|++.+|+.-|-.-.+++...+-.++.-....|...++ |...-..++. |.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HH
Confidence 35667778888999999999998877665444443332233333333333222 2222223333 44
Q ss_pred cCCcHHHHHHHHHHHHH
Q 044628 477 HGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~ 493 (665)
..+++..|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56788888888877765
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.33 E-value=1e+02 Score=32.08 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=82.2
Q ss_pred HHHHHHhCCCCChhH--HHHHHHHhhcCCChHHHHHHHcccCCCCc---ccHHHHHHHHHhCCCCchHHHHHhhhCCCCC
Q 044628 86 HSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEMRVRNI---VTWNTLISGIINCGGNVTPYFRRMLLDNVRL 160 (665)
Q Consensus 86 ~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~~~~~~m~~~g~~p 160 (665)
.+.+++.|..++... ..+.+...++.|+.+-+..+++.-..++. ..++. +...+..|+.+ .++.+.+.|...
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~~~g~~~--~v~~Ll~~~~~~ 94 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE-LHDAVEEGDVK--AVEELLDLGKFA 94 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH-HHHHHHCCCHH--HHHHHHHcCCcc
Confidence 344445565554322 23344555566776665555554332221 11222 23333444433 233333333221
Q ss_pred Ccc---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhCCChHHHHHHHhccCCC---CchhHH
Q 044628 161 DHI---TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV--SSALVDLYGKCGFVEDARRVFDEVLCR---DLVLWN 232 (665)
Q Consensus 161 ~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 232 (665)
+.. .-.+.+...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-... |..-++
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T 170 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCT 170 (413)
T ss_pred cccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Confidence 110 011233333444544 34444555565544321 223344455667766666666543322 222333
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhh---HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc
Q 044628 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT---FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297 (665)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 297 (665)
.|.. .+..|+. ++.+.+.+.|..++... ..+++...+..|+.+ +.+.+++.|..++
T Consensus 171 pL~~-A~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 171 PLII-AMAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHH-HHHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 3332 2334443 23444455565554322 123333333444443 3444455555554
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.19 E-value=79 Score=32.15 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHH-hcCChHHHHHHHHhC
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILP--DSEHYTCLTDLLG-RVGLLVEAYDLLASM 527 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 527 (665)
+..+.+.|.+..|.++.+-+.. +.| |+.....+||.|+ ++++++--+++++..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4456777778888887777765 444 3444555566664 677777777776664
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.08 E-value=82 Score=29.03 Aligned_cols=125 Identities=18% Similarity=0.107 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYTC 506 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 506 (665)
|.+..++.+.+.+...+|+...++-.+. +| |..+-..+++.++-.|++++|..-++..-. +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 3455677788888999999998888776 55 445666678888999999999887776654 3443 445555
Q ss_pred HHHHHHhcCChHHHH-HHHHhC--CCCC--ChhHHHHHHH-H--HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 507 LTDLLGRVGLLVEAY-DLLASM--PIEP--RSDTLGAFIG-A--CKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 507 l~~~~~~~g~~~~A~-~~~~~~--~~~p--~~~~~~~ll~-~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
+|++ +.+. ++|..- |.-+ +...|...+. + |...|.-+.....-+++++-.|..++
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 5443 2232 233332 2111 3445665553 3 33334555566677788887776544
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.07 E-value=26 Score=31.73 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChHHH
Q 044628 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYH--ILPDSEHYTCLTDLLGRVGLLVEA 520 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 520 (665)
++|.+.|-++...+.--+......|.. |....+.+++++++....+-+. -.+|++.+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444455544444432222222222222 2223445555555544443111 123444555555555555555444
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.46 E-value=7.6 Score=21.99 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..+..++.+|...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999877643
No 369
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.45 E-value=7.9 Score=22.60 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 547 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888899999998888877777766543
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.87 E-value=15 Score=32.46 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
+++|...|+++...+|++ ..|..-..+. +.|-++-.++.+++.
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 567788888889999986 4444333333 245566666655544
No 371
>PRK13342 recombination factor protein RarA; Reviewed
Probab=69.67 E-value=1.4e+02 Score=31.13 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=58.1
Q ss_pred CCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCchhHHHHH
Q 044628 260 KGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM---TAKNVVSWNTMV 336 (665)
Q Consensus 260 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 336 (665)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44445555554443 6788888777777654321111 22222222221 122223455556
Q ss_pred HHHHc---CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCC
Q 044628 337 VGFGQ---NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLS 378 (665)
Q Consensus 337 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 378 (665)
+++.+ .++.+.|+.++..|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 66655 5789999999999999998888666555555544433
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.41 E-value=49 Score=32.28 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCCCCchHH
Q 044628 551 LAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~~~~~~~ 571 (665)
.|.++..++++.+|.-|....
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 467778888999998655433
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.12 E-value=3.4e+02 Score=34.61 Aligned_cols=154 Identities=11% Similarity=-0.047 Sum_probs=85.2
Q ss_pred HHhcCCChHHHHHHHHHH----HHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhc-cCCCCchhHHHHHHHHHhcCCch
Q 044628 171 ACVQADDIEVGRRLHSFI----LKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDE-VLCRDLVLWNVMVSCYALNCLGD 245 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 245 (665)
+--+.+.+..|...++.- ++. ......|-.+...|+.-++.|...-+... ...++ ...-|.-....|++.
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 344556666666666652 111 11223344455578887877776666552 33232 233455566778888
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCCHHHHHHHHhc
Q 044628 246 GAIAVFNLMRLEGMKGD-YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVAT-SLVDMYAKNGNIDDACRVFDG 323 (665)
Q Consensus 246 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~ 323 (665)
.|...|+.+.+.+ |+ ..+++.++...-..+.++...-..+.....- .+....++ .=+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 8888888887754 44 6677777777666676666655444333321 22222222 22333356666666655554
Q ss_pred cCCCCchhHHHH
Q 044628 324 MTAKNVVSWNTM 335 (665)
Q Consensus 324 ~~~~~~~~~~~l 335 (665)
..+..+|...
T Consensus 1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred --cccccchhHH
Confidence 4555566554
No 374
>PRK10941 hypothetical protein; Provisional
Probab=67.65 E-value=35 Score=32.87 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
+.+-.+|.+.++++.|+...+.+ .+.|+ +.-|.--.-.+.+.|....|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34556778888888888888887 55564 445666666788888888888888888888888766544
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.94 E-value=1.2e+02 Score=28.86 Aligned_cols=182 Identities=10% Similarity=0.054 Sum_probs=105.6
Q ss_pred cCCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHhCCCCchHhHHHHHHHHHH---hCC--CCchhHHHHHHHHHHhc
Q 044628 341 QNGDGREAVKLLRDMLQGSFCPD---EVTLASILSSCGSLSISCETRQVHAYAIK---NGV--QAFLSIENALINAYSKC 412 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~---~g~--~~~~~~~~~li~~~~~~ 412 (665)
+..++++|+.-|.+..+..-.-. ...+-.++....+.+++++....+.++.. +.+ .-+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578899999998876422222 23445567777888888888777776532 222 22345567777777766
Q ss_pred CCHHHHHHHHhcCCC-----CChhHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CH-------HHHHHHH
Q 044628 413 GSIAGALQCFGSVKE-----PDLVTW----TSIIGAYAFHGLSKESIEVFEKMLSHAVRP----DS-------IAFLEVL 472 (665)
Q Consensus 413 g~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~-------~t~~~ll 472 (665)
.+.+--...++.-.+ +|...| +.|...|...|++.+..++++++..+--.- |. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666655555543321 333333 456677777888888888888877642111 11 2345555
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH----HHHHHhcCChHHHHH
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL----TDLLGRVGLLVEAYD 522 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~ 522 (665)
+.|....+-..-..+|++......--|.+.....+ ..+..|.|++++|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 66666666666667777665422223433322221 223456677777653
No 376
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.66 E-value=51 Score=35.04 Aligned_cols=98 Identities=17% Similarity=0.043 Sum_probs=50.2
Q ss_pred HhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHH
Q 044628 208 GKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287 (665)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 287 (665)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+.+. |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3455666665554432 2445566666666666666666666655433 3345555555555554444444
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044628 288 LVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 288 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (665)
...+.|. . |.-.-+|...|+++++.+++.
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 4444441 1 122223444555555555543
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.29 E-value=23 Score=37.25 Aligned_cols=97 Identities=20% Similarity=0.125 Sum_probs=59.7
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPD--SEHYTCLTDLLGRVGLLVEAYDLLASM-PI-EPRSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a 552 (665)
..|+...|..++..+.. ..|- -.....|...+.+.|...+|-.++.+. .+ ...+.++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34667777777666643 2332 223445566666666667777666554 22 22345666666777777777777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHH
Q 044628 553 KWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 553 ~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
++.++++++++|+++..-..|-.+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 777777777777776665555443
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.17 E-value=11 Score=24.53 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 571 ALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 571 ~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
..|+.+|...|+.+.|+++++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888999999999999998887543
No 379
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.09 E-value=2.3e+02 Score=31.43 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC---CCCchhHHHHHHHHHcCCC-------hHHHHHHHHHHhhCCCCCCHH--HHHHH
Q 044628 303 SLVDMYAKNGNIDDACRVFDGMT---AKNVVSWNTMVVGFGQNGD-------GREAVKLLRDMLQGSFCPDEV--TLASI 370 (665)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~--t~~~l 370 (665)
++|-.+.+||++++|.++..+.. ++....+-..+..|+...+ -++...-|++........|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 36677789999999999984433 2344566677777776533 235666677766654433443 44445
Q ss_pred HHHhCCCCc--------hHhHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH
Q 044628 371 LSSCGSLSI--------SCETRQVHAYAIKNGVQA-----FLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSII 437 (665)
Q Consensus 371 l~~~~~~~~--------~~~a~~i~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 437 (665)
|..|--... .|.-..+.=.+++..... +..++..|=....+-| .+.|.. ..+... ..
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Yf 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---YF 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------HH
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---HH
Confidence 555533221 122222222222222211 1122221111111111 011211 112222 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---c
Q 044628 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR---V 514 (665)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~ 514 (665)
..+.-.|+++.|++.+-+ ..+...|.+-+...+..+.-.+-.+... ..+.....-.|....+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888887766 2223445555555554433222211111 2222110111222456777777765 4
Q ss_pred CChHHHHHHHHhC
Q 044628 515 GLLVEAYDLLASM 527 (665)
Q Consensus 515 g~~~~A~~~~~~~ 527 (665)
.+..+|.+.+--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 5677777777666
No 380
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.00 E-value=2e+02 Score=30.34 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=110.1
Q ss_pred CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 044628 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407 (665)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 407 (665)
|-...-+++..+.++..+.-...+..+|..-| -+...|..++..|... ..+.-..++..+.+..+. |+....-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566778889999999999999999998855 5777888888888877 667777888888877654 4445566777
Q ss_pred HHHhcCCHHHHHHHHhcCCC------CCh---hHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc
Q 044628 408 AYSKCGSIAGALQCFGSVKE------PDL---VTWTSIIGAYAFHGLSKESIEVFEKMLS-HAVRPDSIAFLEVLSACSH 477 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~ 477 (665)
.|-+ ++.+.+...|.++.. .+. ..|..++..- -.+.+..+.+..+... .|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 888888888877652 111 2566555421 2455666666666655 2333344555556667777
Q ss_pred CCcHHHHHHHHHHHHH
Q 044628 478 GGLVSEGLRYFNLMIS 493 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~ 493 (665)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7888888888877766
No 381
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.86 E-value=82 Score=26.54 Aligned_cols=70 Identities=17% Similarity=0.052 Sum_probs=44.4
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 498 LPDSEHYTCLTDLLGRVGLL---VEAYDLLASM-P-IEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 498 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
.++..+--.+..++.+..+. .+.+.++++. + -.|+ -....-|.-+|.+.++++.++++.+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 46666666677777776554 4445566665 2 2232 22333344567788888888888888888888753
No 382
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.44 E-value=1.3e+02 Score=28.27 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=54.1
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 044628 433 WTSIIGAY--AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510 (665)
Q Consensus 433 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 510 (665)
|...+.|+ ..++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.+.. ...+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 34445553 4456666666665221 12222211 255555556777777777776532 11122223333333
Q ss_pred HHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 044628 511 LGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHG 547 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 547 (665)
..+|.+.||..+.+...-.-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 555777777777777632222346666666665433
No 383
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.84 E-value=13 Score=34.26 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=44.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
+..+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+.+.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445677778888888777 4455 46678888877788888888888888888888876
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.82 E-value=82 Score=25.26 Aligned_cols=86 Identities=10% Similarity=0.148 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 044628 278 SSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357 (665)
Q Consensus 278 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 357 (665)
..++|..|.+.+...+. ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45777777777777663 334444445556788999999966555666789888877654 477888888888888877
Q ss_pred CCCCCCHHHH
Q 044628 358 GSFCPDEVTL 367 (665)
Q Consensus 358 ~g~~p~~~t~ 367 (665)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4544444
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.74 E-value=22 Score=26.62 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCChHHHHH
Q 044628 504 YTCLTDLLGRVGLLVEAYD 522 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~ 522 (665)
..+|+.+|+..|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.50 E-value=21 Score=26.66 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=25.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCcHHHHHHH
Q 044628 442 FHGLSKESIEVFEKMLSHAVRPDS--IAFLEVLSACSHGGLVSEGLRY 487 (665)
Q Consensus 442 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 487 (665)
..++.++|+..|+...+.-..|.. .++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666654322222 2555566666666666665554
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.22 E-value=38 Score=23.19 Aligned_cols=27 Identities=4% Similarity=-0.164 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 570 YALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 570 ~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...++-.+.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456778899999999999999988753
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.20 E-value=85 Score=25.19 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=44.7
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044628 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459 (665)
Q Consensus 380 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 459 (665)
.++|..|.+.+...+. ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++-.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4455555555544443 112222222344567788888844444445678887766644 3667777777777777665
Q ss_pred CCCCCHHHHH
Q 044628 460 AVRPDSIAFL 469 (665)
Q Consensus 460 g~~p~~~t~~ 469 (665)
| .|....|.
T Consensus 99 g-~~~~q~Fa 107 (116)
T PF09477_consen 99 G-SPELQAFA 107 (116)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.15 E-value=47 Score=35.18 Aligned_cols=133 Identities=17% Similarity=0.041 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHhC-CCCC--ChhH
Q 044628 462 RPDSIAFLEVLSACSHG--GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR-VGLLVEAYDLLASM-PIEP--RSDT 535 (665)
Q Consensus 462 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 535 (665)
-|+..|..+++.-...- ..-+-|-.+|..|.. .+.|--...| +..+|-| .|+...|.+.+.++ ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46777766666544433 233456666666654 3334333222 3445554 68999999988887 4444 2344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
...|.....+.|-...|-..+.+.+.+.-..|-.+..++++|....+.+.|.+.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55666777777778889999999999888788899999999999999999999998876544
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.16 E-value=58 Score=27.21 Aligned_cols=42 Identities=5% Similarity=0.013 Sum_probs=33.6
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 551 LAKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 551 ~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788887764 5566778888999999999999999998875
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.51 E-value=31 Score=27.01 Aligned_cols=53 Identities=6% Similarity=-0.055 Sum_probs=37.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 543 CKVHGSIGLAKWAAEKLLELEPSK---------PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 543 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
+.+.||+..|.+.+.+.+...... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778888877777776533221 12345678889999999999999887764
No 392
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=58.94 E-value=58 Score=26.67 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHH----HHHHHHHhcCCHHHHHHHHHHH
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLL-------ELEPSKPVNYA----LVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~y~~~g~~~~A~~~~~~m 593 (665)
+..|-.++...|+++++....++++ +++.+.-..|+ .-+-++...|+.+||.+.|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3334444455555544444433333 45554333333 3445667788888888887654
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.63 E-value=86 Score=30.09 Aligned_cols=86 Identities=5% Similarity=-0.010 Sum_probs=48.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHC--CCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-
Q 044628 234 MVSCYALNCLGDGAIAVFNLMRLE--GMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK- 310 (665)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 310 (665)
=|.+++..++|.+++...-+--+. .++|...-. -|-.|.+.+....+.++-....+.--.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367788888888877655443222 233332222 233456667776666666666654333334446666665544
Q ss_pred ----cCCHHHHHHHH
Q 044628 311 ----NGNIDDACRVF 321 (665)
Q Consensus 311 ----~g~~~~A~~~~ 321 (665)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666665
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=1.2e+02 Score=29.24 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHhCCCCchHhHHHHHH----HHHHhCCCCchhHHH
Q 044628 335 MVVGFGQNGDGREAVKLLRDMLQGSFCPDE-------VTLASILSSCGSLSISCETRQVHA----YAIKNGVQAFLSIEN 403 (665)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~~ 403 (665)
+..-..+.+++++|+..+.+....|+..|. .|...+...|...|+...-.+... .|....-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHh-cCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044628 404 ALINAYSK-CGSIAGALQCFGSVKE---------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459 (665)
Q Consensus 404 ~li~~~~~-~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 459 (665)
+|++.+.. ...++.-..+.....+ --...-.-+|..+.+.|.+.+|+.+...+...
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 395
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.02 E-value=3.3e+02 Score=30.95 Aligned_cols=318 Identities=13% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHH----hccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044628 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC----GTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311 (665)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 311 (665)
..+..+|..++|++.--... |..+-..++.-+ ...+++.........+...-+..++...-.-+......
T Consensus 355 ~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~ 428 (894)
T COG2909 355 EWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ 428 (894)
T ss_pred HHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc
Q ss_pred CCHHHHHHHHhccCCCCch-----------hHHHHHHHHHcC-CChHHHHHHHHHHhhC----CCCCCHHHHHHHHHHhC
Q 044628 312 GNIDDACRVFDGMTAKNVV-----------SWNTMVVGFGQN-GDGREAVKLLRDMLQG----SFCPDEVTLASILSSCG 375 (665)
Q Consensus 312 g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~ 375 (665)
.++++|..+..+....=.. .|+++-....-. |++++|+++-+..... -..+..+.+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Q ss_pred CCCchHhHHHHHHHHHHhCCCCchhHHHHHHHH-----HHhcC--CHHHHHHHHhcCCC----------CChhHHHHHHH
Q 044628 376 SLSISCETRQVHAYAIKNGVQAFLSIENALINA-----YSKCG--SIAGALQCFGSVKE----------PDLVTWTSIIG 438 (665)
Q Consensus 376 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~-----~~~~g--~~~~A~~~~~~~~~----------~~~~~~~~li~ 438 (665)
-.|++++|..+.+...+..-..++..+...... +...| ..++....|..... .-...+..+..
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHH-
Q 044628 439 AYAFH-GLSKESIEVFEKMLSHAVRPDSIAFL--EVLSACSHGGLVSEGLRYFNLMISDYHILPD--SEHYTCLTDLLG- 512 (665)
Q Consensus 439 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~- 512 (665)
++.+. +...+|..-++.-......|-..... .+.......|+.++|....+++.. ...-. ..-|.+++..-.
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~--l~~~~~~~~~~~a~~~~v~~ 666 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER--LLLNGQYHVDYLAAAYKVKL 666 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhcCCCCCchHHHHHHHhhH
Q ss_pred ----hcCChHHHHHHHHh------CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 513 ----RVGLLVEAYDLLAS------MPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 513 ----~~g~~~~A~~~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
..|+.++|.....+ +...--...|..+...-...|-..+++.....+.+
T Consensus 667 ~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~~ 725 (894)
T COG2909 667 ILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELAS 725 (894)
T ss_pred HHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHhh
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.85 E-value=1.9e+02 Score=28.10 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---CchhHHHHHHHHHcCCChHHHHHHHHHHhh-----CCCCCCHHH
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTAK---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQ-----GSFCPDEVT 366 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 366 (665)
.+.....|.++|.+.+|..+.++...- +...|-.++..++..|+--.|.+-++.+.+ .|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 345567888999999999998887653 556788899999999998888888877743 355555443
No 397
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.71 E-value=2.5e+02 Score=29.44 Aligned_cols=356 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHCCCCCCHhhHHHHHHH---HhccCCcHHHHHHHHHHHHhCCCCchh------HHH
Q 044628 234 MVSCYALNC--LGDGAIAVFNLMRLEGMKGDYFTFSSLVNS---CGTLGSSKLGRQIHGLVIKQSFDLDVL------VAT 302 (665)
Q Consensus 234 li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~ 302 (665)
+...+-..| +...+++.++......+.--...-+.+=-+ +.-..+++.|+.-++..-..--..... ++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhcC-CHHHHHHHHhccCC--CCchhHHH-----HHHHHHcCCChHHHHHHH---------------------H
Q 044628 303 SLVDMYAKNG-NIDDACRVFDGMTA--KNVVSWNT-----MVVGFGQNGDGREAVKLL---------------------R 353 (665)
Q Consensus 303 ~li~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~-----li~~~~~~g~~~~A~~~~---------------------~ 353 (665)
.|.+.|.... .+..|..++++..+ .+...|.. ++..+.-..++..|++++ .
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLS 172 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHH
Q ss_pred HHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------
Q 044628 354 DMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE------ 427 (665)
Q Consensus 354 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 427 (665)
...-.-.++|......++..|...-+-...-....++++ +...+.-+.-|.-.|+...+...++++.+
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk------vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK------VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH------HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Q ss_pred -------------------------------CChhHHHHHHHHHHhc--CChHHHHHHHHHHHHcC-CCC-----CHHHH
Q 044628 428 -------------------------------PDLVTWTSIIGAYAFH--GLSKESIEVFEKMLSHA-VRP-----DSIAF 468 (665)
Q Consensus 428 -------------------------------~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g-~~p-----~~~t~ 468 (665)
.-+..-..+..+|.+. +-.++|+...++..+.. ..| -..+.
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------hhhHHHHHHHHH-hcCChHHHHHHHHhC-----CCCCChhH
Q 044628 469 LEVLSACSHGGLVSEGLRYFNLMISDYHILPD-------SEHYTCLTDLLG-RVGLLVEAYDLLASM-----PIEPRSDT 535 (665)
Q Consensus 469 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~-~~g~~~~A~~~~~~~-----~~~p~~~~ 535 (665)
-.++.+=.-.|+..+|++-...|..-..-.|. .....+++..|+ ..|.++.|..-|..+ ...--...
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSK-------PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
-..+...|.+.|+.+.-.++.+.+--.+... ..++...+-.....+++.||.+...+..+
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 398
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.67 E-value=1.2e+02 Score=32.33 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHH---HHHHHHHHhcCChHHHHHHHHHHHH
Q 044628 404 ALINAYSKCGSIAGALQCFGSVKE--PDLVTW---TSIIGAYAFHGLSKESIEVFEKMLS 458 (665)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~ 458 (665)
.|+.-|.+++++++|..++..|.= .....| +.+.+.+.+..-..+....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 567789999999999999999872 122233 3334444444444455555555544
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.58 E-value=1.5e+02 Score=30.35 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=27.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--cCCcHHHHHHHHHHHHH
Q 044628 441 AFHGLSKESIEVFEKMLSHAVRPDSI--AFLEVLSACS--HGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 441 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 493 (665)
...+++..|.++|+.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556677777777776665 444433 2222333322 34556666666666554
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.13 E-value=42 Score=28.65 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=47.0
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 044628 517 LVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585 (665)
Q Consensus 517 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 585 (665)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|++..+-...+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456777777774 223334445566789999999999999999999999998999998887765433
No 401
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.89 E-value=22 Score=23.23 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=19.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhC
Q 044628 168 LLRACVQADDIEVGRRLHSFILKVG 192 (665)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~g 192 (665)
+.++|...|+.+.|+.+++.++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567888888888888888887654
No 402
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.65 E-value=25 Score=32.41 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=51.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHK 600 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 600 (665)
...++.+.+-+++.+++++-|+....|..++..-.++|+.+.|.+.+++..+.....
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 457889999999999999999999999999999999999999999999988766543
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.13 E-value=80 Score=24.24 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHH
Q 044628 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247 (665)
Q Consensus 181 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 247 (665)
+.++++.+.+.|+- +......+-..-...|+.+.|+++++.++ +....|...+.++-+.|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34566666666633 22223333222235577888888888888 7777788888887777765544
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.70 E-value=68 Score=26.53 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 508 (665)
+..+-++....-++.|++...-..|+||.+.+++..|.++|+.++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34445556666678899999999999999999999999999988764 334444565544
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.69 E-value=44 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=13.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044628 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564 (665)
Q Consensus 531 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 564 (665)
|++.++..++.++...|+.++|++..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333333333344444444444444444444333
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.00 E-value=63 Score=26.73 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 044628 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572 (665)
Q Consensus 518 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 572 (665)
.+++.-+-.+.+-|++.+..+-+++|++.+|+..|.++++-+...-+.....|-.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3444444455788999999999999999999999999999886544443333433
No 407
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=53.65 E-value=43 Score=20.70 Aligned_cols=30 Identities=17% Similarity=-0.050 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q 044628 536 LGAFIGACKVHGSIGLAKWA--AEKLLELEPS 565 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 565 (665)
|-.+.-.+...|+.++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 33444445555566666665 3344444443
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.57 E-value=37 Score=36.99 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCC
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI----------AFLEVLSACSHGGLVSEGLRYFNLMISDYH-ILPD 500 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~ 500 (665)
+...++-.|....+++..+++.+.++. -||.. .|.-.++--.+-|+-++|+...-.+++..| +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445566667777777777777777776 34322 122233333445777777777666655333 4455
Q ss_pred hhhHHH-----H--HHHHHhcCChHHHHHHHHhC-CCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 501 SEHYTC-----L--TDLLGRVGLLVEAYDLLASM-PIEPRSDT---LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 501 ~~~~~~-----l--~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
..+... + ...|..++..+.|.+.|++. ..+|...+ +..|+.+...+ |+.-.++. .+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~---------Fens~Elq----~I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH---------FENSLELQ----QI 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh---------ccchHHHH----HH
Confidence 432211 1 11233445566666666666 55554332 33333332211 11111110 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 570 YALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 570 ~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
-+.|..++.+.|..+.-..+|+-.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVA 370 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHH
Confidence 345667788888888777777654
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.44 E-value=1.5e+02 Score=25.52 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044628 428 PDLVTWTSIIGAYAFHGL-SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478 (665)
Q Consensus 428 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 478 (665)
.+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 344566667666654443 334566666666666666666777777766654
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.83 E-value=1.6e+02 Score=28.29 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=56.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH--
Q 044628 437 IGAYAFHGLSKESIEVFEKMLS--HAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG-- 512 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 512 (665)
|.+++..|++.+++...-+--+ +.++|...-.. |-.|++.|.+..+.++-..-..+-+ .-+..-|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6778888888887766544433 22344333333 3347788888888888777776311 222344777777665
Q ss_pred ---hcCChHHHHHHHHhC
Q 044628 513 ---RVGLLVEAYDLLASM 527 (665)
Q Consensus 513 ---~~g~~~~A~~~~~~~ 527 (665)
-.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 469999999998654
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.53 E-value=1.6e+02 Score=27.74 Aligned_cols=81 Identities=10% Similarity=0.038 Sum_probs=47.5
Q ss_pred HHhcCCHHHHHHHHhcCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCcHHHH
Q 044628 409 YSKCGSIAGALQCFGSVK--EPDL-VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA-FLEVLSACSHGGLVSEG 484 (665)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 484 (665)
|.....+..|...+.+.. .|++ .-|+.-+..+.+..+++.+.+=-.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445556666766666544 3555 3345556666777777777666666555 4666642 33344455556666666
Q ss_pred HHHHHHH
Q 044628 485 LRYFNLM 491 (665)
Q Consensus 485 ~~~~~~~ 491 (665)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 412
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.09 E-value=28 Score=33.55 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 044628 511 LGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
.-+.|+.++|..+|+.+ ...|+ +.+..-+......+++.-+|-+.+-+++.+.|.+..+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 34566677777766655 44443 222333333334455666666666666666666655443
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.02 E-value=50 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445667788888888888887653
No 414
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.26 E-value=2.6e+02 Score=27.76 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=87.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHhcCCCCC
Q 044628 427 EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH------GGLVSEGLRYFNLMISDYHILPD 500 (665)
Q Consensus 427 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~ 500 (665)
+.|-..|+-- -.++++.++++...++ .|........|.+|-. .-+|..-..+|+.+.. +.|+
T Consensus 261 dQDr~lW~r~--------lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apS 328 (415)
T COG4941 261 DQDRSLWDRA--------LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPS 328 (415)
T ss_pred ccchhhhhHH--------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCC
Confidence 3566667643 2478888888888887 4888888888776532 3467777788887765 4566
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
+++--+=.-+++..--.+.++..++...-.|. ...+..-...+.+.|..++|...|++++++.++...
T Consensus 329 PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 329 PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 44332223344555556777777777733332 233444456688999999999999999999887443
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.36 E-value=2.6e+02 Score=27.58 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhcC
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-------PIEPRSDTLGAFIGA-CKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~ 563 (665)
+.+-....-|++-|+-+.|++.+++- +.+-|.+.+..-++. |..+.-+.+-++..+.+++.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34445555666777777666666543 444444443333322 222333344444444444443
No 416
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.07 E-value=1.2e+02 Score=23.52 Aligned_cols=62 Identities=13% Similarity=-0.026 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCHH-HHHHHHHHH
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK--PVNYALVSNVYASERCWF-DVARLRKMM 593 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~-~A~~~~~~m 593 (665)
|......+...+...|+++.|...+-.+++.+|+. ..+-..|..++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45566667777888888888888888888777653 556677777777777644 455555554
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.45 E-value=57 Score=29.62 Aligned_cols=51 Identities=20% Similarity=0.015 Sum_probs=33.5
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
...+.+......+.+.+-....|+...|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445544444444444443345678888888888888888888887777777
No 418
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.64 E-value=1.7e+02 Score=24.81 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 044628 462 RPDSIAFLEVLSACSHGG---LVSEGLRYFNLMISDYHILP--DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR 532 (665)
Q Consensus 462 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 532 (665)
.+...+-..+..++.++. ++.+++.+++.+.++ -.| ..+..--|.-++.|.|++++++++++.. ..+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 333444334444444433 455666666666541 122 2223333445566667777776666655 33443
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.34 E-value=79 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhh
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQ 357 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 357 (665)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999877
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.66 E-value=84 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.548 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLS 458 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 458 (665)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887776
No 421
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.30 E-value=5.3e+02 Score=30.22 Aligned_cols=254 Identities=8% Similarity=-0.047 Sum_probs=137.9
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc
Q 044628 218 RVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLD 297 (665)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 297 (665)
.+...+..+|...-...+..+.+.+. .++...+...... +|...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444556666666666666666664 3344444454432 3333333444444333221111222323332 245
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCC
Q 044628 298 VLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377 (665)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 377 (665)
..+-...++.+...+.- ....+...+..+|...=...+.++.+.+..+. +..... .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHh
Confidence 56655666666544321 12234455566666655666666666554432 112222 34555555555566555
Q ss_pred CchHh-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 044628 378 SISCE-TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL-QCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEK 455 (665)
Q Consensus 378 ~~~~~-a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 455 (665)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. .++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333322 456777778888888888766553 34444556776666677777877765 456677767
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 456 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
+.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 66776666677777775444567777777766
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.07 E-value=42 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
+..++++.++.. +-|..--..++.++...|++++|.++.+.+.+
T Consensus 8 ~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 8 ELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444444332 23344445556666666666666666666554
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.80 E-value=1.4e+02 Score=23.02 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHH
Q 044628 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAV 349 (665)
Q Consensus 310 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 349 (665)
..|+.+.|+++++.++ +..-.|...+.++-..|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777888888777 77777777777777777655543
No 424
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.67 E-value=3.7e+02 Score=27.88 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044628 403 NALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHA 460 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 460 (665)
..|+.-|.-.|++.+|.+..+++.- ...+.+.+++.+.-+.|+-...+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3466777888888888888887663 345677777777777777666666666555544
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.49 E-value=63 Score=21.52 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=26.8
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 044628 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVD 205 (665)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 205 (665)
..+.|-+.++..+++.|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777788889999999998888888877765
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.78 E-value=42 Score=32.53 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVL 472 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 472 (665)
.-||..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788999999999999999999999999776666665444
No 427
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.05 E-value=1.6e+02 Score=30.49 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 524 LASMPIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 524 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
|....++|. ..++.+-+..+.+++|+..|-...++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333356664 4456667778889999999999999999999863
No 428
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.93 E-value=1.2e+02 Score=27.74 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEEEECCEE
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV-SNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEI 613 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~ 613 (665)
....++..|...||++.|-++|--++...+-|....-.+ +.++.+.+.-....+.++.|...-.....-...+......
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 456778888889999999999988887766555443333 4566666665555567766643211111001111112234
Q ss_pred EEEEeCCCCCc
Q 044628 614 HTFVSSDRSHP 624 (665)
Q Consensus 614 ~~f~~~~~~~~ 624 (665)
+.|..|.+.|-
T Consensus 123 pvfrsGs~t~t 133 (199)
T PF04090_consen 123 PVFRSGSRTHT 133 (199)
T ss_pred ccccCCCcccc
Confidence 67888888873
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.65 E-value=3.4e+02 Score=26.88 Aligned_cols=164 Identities=15% Similarity=0.071 Sum_probs=88.1
Q ss_pred CHHHHHHHHhcC-C-CCChhHHHHHHHHHHhcC-----ChHHHH--------HHHHHH-HHcCCCCC--H----HH-HHH
Q 044628 414 SIAGALQCFGSV-K-EPDLVTWTSIIGAYAFHG-----LSKESI--------EVFEKM-LSHAVRPD--S----IA-FLE 470 (665)
Q Consensus 414 ~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~g-----~~~~A~--------~~~~~m-~~~g~~p~--~----~t-~~~ 470 (665)
++..+.+++..+ . +.+...|..++..+.... ..+... +++..+ .+.|..+. . .. -..
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 356677777777 3 577777777665543221 111111 122222 22355544 2 12 222
Q ss_pred HHH-HHhcCCcHHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 044628 471 VLS-ACSHGGLVSEGLRYFNLMISDYHI---LPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVH 546 (665)
Q Consensus 471 ll~-a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 546 (665)
++. +|...+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+....
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 233 342333467889999988873111 3455566667777778888666556666555456777778888888888
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCchHHHHHHHH
Q 044628 547 GSIGLAKWAAEKLLELE-PSKPVNYALVSNVY 577 (665)
Q Consensus 547 g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y 577 (665)
.+.+.-.++++.++.-+ -.....+..+..++
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHHh
Confidence 89999999999998843 12233445554443
No 430
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.62 E-value=3.5e+02 Score=27.02 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHH
Q 044628 446 SKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR---VGLLVEAY 521 (665)
Q Consensus 446 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~ 521 (665)
.+.-+.++++.++. .|+. .....++..+.+....++..+-++.+... .+-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 35667788888877 4544 45677788888888888888888888873 22356667766665443 22344444
Q ss_pred HHHHhC---------CC------CC--ChhHHHHHH---HHHHhcCCHHHHHHHHHHHHhcC
Q 044628 522 DLLASM---------PI------EP--RSDTLGAFI---GACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 522 ~~~~~~---------~~------~p--~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
++|.+. +. .+ +......++ ..+...|..+.|..+++.+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444433 11 11 122223333 33467899999999999999976
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.26 E-value=1.6e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 540 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
+..|.+.|.+++|.+++++..+ +|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 3467778888888888888777 6665443
No 432
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.11 E-value=5.5e+02 Score=29.23 Aligned_cols=167 Identities=11% Similarity=0.098 Sum_probs=83.1
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCh--hHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCc-hHH
Q 044628 73 SAKFGFLQQGKQLHSHIMKLGLCNKL--SLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV-TPY 149 (665)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~-~~~ 149 (665)
|...|.++.|.++-+. .|+. .++-.-.++|...+++..|-+++.++ ..++..+.--+....+.. +..
T Consensus 368 yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~~L~~ 437 (911)
T KOG2034|consen 368 YLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQERALRT 437 (911)
T ss_pred HHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHHHHHH
Confidence 3455566655554321 1222 23444456666777888888887776 334555544455555444 443
Q ss_pred HHHhhhCCCCCCcchHHHHH-----HHH-hcCCCh----HHHHHHHHH--------HHH-hCCCCchHHHHHHHHHHHhC
Q 044628 150 FRRMLLDNVRLDHITFNSLL-----RAC-VQADDI----EVGRRLHSF--------ILK-VGFGLNCFVSSALVDLYGKC 210 (665)
Q Consensus 150 ~~~m~~~g~~p~~~t~~~ll-----~~~-~~~~~~----~~a~~~~~~--------~~~-~g~~~~~~~~~~li~~~~~~ 210 (665)
|-.=+-..++|...+-..+| ..+ .+.+++ +++..-++. +.+ .....+...+.+........
T Consensus 438 ~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~ 517 (911)
T KOG2034|consen 438 FLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASH 517 (911)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHc
Confidence 33333333444443333221 111 122222 222221111 111 11112333344445555666
Q ss_pred CChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 044628 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLM 254 (665)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 254 (665)
|+.+....+-.-|. -|..++.-+++.+.+++|++++..-
T Consensus 518 ~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 518 GRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred cCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77776665544432 4677888888999999998887653
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.43 E-value=41 Score=32.63 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHH
Q 044628 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSL 269 (665)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 269 (665)
-||..|..-++.|++++|+.++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4778888888888888888888888888876555555443
No 434
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.36 E-value=2.9e+02 Score=25.85 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=63.4
Q ss_pred hcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 044628 411 KCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489 (665)
Q Consensus 411 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 489 (665)
-.+++++|.+.+-.-.- ++-. .-++.++...|+...|+.+++.+.-..- +......++.+ ...+.+.+|..+-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 34677777777744321 1211 2367777778888888888877543211 11222333333 44578888887766
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChh
Q 044628 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD 534 (665)
Q Consensus 490 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 534 (665)
..... -....+..++..+.....-....+.+-.+|..+...
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 65441 114466666666664443334444455556665544
No 435
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.02 E-value=3.4e+02 Score=26.53 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHcCCChHHHHH
Q 044628 329 VVSWNTMVVGFGQNGDGREAVK 350 (665)
Q Consensus 329 ~~~~~~li~~~~~~g~~~~A~~ 350 (665)
.-.|..|+.+++..|+.+-.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHH
Confidence 3568889999999998776543
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.19 E-value=95 Score=20.64 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=18.8
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 044628 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVN 271 (665)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 271 (665)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666555555554443
No 437
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.97 E-value=4e+02 Score=28.22 Aligned_cols=237 Identities=10% Similarity=0.071 Sum_probs=106.9
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHH-----hhcCCChHHHHHHHcccCC---CCcccHHHHHHHHH-h
Q 044628 73 SAKFGFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHV-----YVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGII-N 141 (665)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~-----~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~-~ 141 (665)
..+.++. ++.+.+++.|..++... ....+.. ....|..+-+.-+++.-.. +|...++.+..+.. +
T Consensus 42 A~~~~~~----~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~ 117 (480)
T PHA03100 42 AKEARNI----DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKK 117 (480)
T ss_pred hhccCCH----HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcc
Confidence 3444554 34444445565544321 1233344 4555666666555554332 23333444444433 2
Q ss_pred CCCCchHHHHHhhhCCCCCCcch--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCChHHHH
Q 044628 142 CGGNVTPYFRRMLLDNVRLDHIT--FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF--VSSALVDLYGKCGFVEDAR 217 (665)
Q Consensus 142 ~~~~~~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~ 217 (665)
.|. .++++.+.+.|..++... -.+.+..++..|. .-.++.+.+.+.|..++.. ...+-+...+..|+.+-+.
T Consensus 118 ~~~--~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~ 193 (480)
T PHA03100 118 SNS--YSIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIK 193 (480)
T ss_pred cCh--HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHH
Confidence 222 555555666665553321 1234444444441 1123444555666554322 2234455566677777777
Q ss_pred HHHhccCCCCch--------hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHh---hHHHHHHHHhccCCcHHHHHHH
Q 044628 218 RVFDEVLCRDLV--------LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYF---TFSSLVNSCGTLGSSKLGRQIH 286 (665)
Q Consensus 218 ~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~ 286 (665)
-+++.-..++.. .+.+.+...+..|+ ...++.+.+.+.|..++.. -.+.+.. .+..|+.+ +.
T Consensus 194 ~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~-A~~~~~~~----iv 266 (480)
T PHA03100 194 FLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHY-AVYNNNPE----FV 266 (480)
T ss_pred HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHH----HH
Confidence 666654333211 11333333444444 1223444445555544322 2233333 33445543 44
Q ss_pred HHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhcc
Q 044628 287 GLVIKQSFDLDVLV--ATSLVDMYAKNGNIDDACRVFDGM 324 (665)
Q Consensus 287 ~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 324 (665)
+.+++.|..++... ...-+....+.|+.+-+..+++.-
T Consensus 267 ~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g 306 (480)
T PHA03100 267 KYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 306 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence 45556665444321 112334445667766666665543
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.41 E-value=1.9e+02 Score=24.11 Aligned_cols=41 Identities=5% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 552 AKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 552 a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
...+|+.+.. +.-..+..|...+..+...|++.+|.++++.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4566777654 4455677788889999999999999998863
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.39 E-value=3.3e+02 Score=28.00 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=39.2
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHH--hcCChHHHHHHHHhC
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSE--HYTCLTDLLG--RVGLLVEAYDLLASM 527 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~ 527 (665)
...+.+++..|.++|+.+... ++++.. .+..+..+|. ...++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345779999999999999883 566555 4555555554 467889999999987
No 440
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.98 E-value=4.8e+02 Score=27.62 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=121.8
Q ss_pred HHHHHhhcCCChHHHHHHHcccCCCCccc--HHHHHHH-----HHhCCCCchHHHHHhhhCCCCCCcc---hHHHHHHHH
Q 044628 103 QVLHVYVKCKAFDDMEKLFDEMRVRNIVT--WNTLISG-----IINCGGNVTPYFRRMLLDNVRLDHI---TFNSLLRAC 172 (665)
Q Consensus 103 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~-----~~~~~~~~~~~~~~m~~~g~~p~~~---t~~~ll~~~ 172 (665)
..+...++.|+.+-+..+++.-..++... ..+.+.. .+..+. .++.+.+.+.|..++.. -.+.+..++
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~--~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~ 114 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDV--KEIVKLLLEYGANVNAPDNNGITPLLYAI 114 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhch--HHHHHHHHHCCCCCCCCCCCCCchhhHHH
Confidence 45566677888888888887654433221 1122232 333333 55566666677655432 233343333
Q ss_pred h-cCCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCC--ChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCc
Q 044628 173 V-QADDIEVGRRLHSFILKVGFGLNCF--VSSALVDLYGKCG--FVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLG 244 (665)
Q Consensus 173 ~-~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 244 (665)
. ..|+.+- .+.+.+.|..++.. ...+.+...++.| +.+-..-+++.-... |...+ +-+...+..|+.
T Consensus 115 ~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~-tpL~~A~~~~~~ 189 (480)
T PHA03100 115 SKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGY-TPLHIAVEKGNI 189 (480)
T ss_pred hcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCC-CHHHHHHHhCCH
Confidence 2 6666554 44455566555432 2345666677778 777777777654333 22222 334455566654
Q ss_pred hHHHHHHHHHHHCCCCCCHhh--------HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchh---HHHHHHHHHHhcCC
Q 044628 245 DGAIAVFNLMRLEGMKGDYFT--------FSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVL---VATSLVDMYAKNGN 313 (665)
Q Consensus 245 ~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~ 313 (665)
+ +.+.+.+.|..++... +...+...+..|+ ...++.+.+++.|..++.. -.+. +...+..|+
T Consensus 190 ~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~Tp-L~~A~~~~~ 262 (480)
T PHA03100 190 D----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTP-LHYAVYNNN 262 (480)
T ss_pred H----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 3 4444455665554321 1334444455555 1124445556666554322 2233 344466788
Q ss_pred HHHHHHHHhccCCCCc---hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC
Q 044628 314 IDDACRVFDGMTAKNV---VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD 363 (665)
Q Consensus 314 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 363 (665)
.+-+..+++.-..++. .-.+.+..+ ++.++. ++++.+.+.|...+
T Consensus 263 ~~iv~~Ll~~gad~n~~d~~g~tpl~~A-~~~~~~----~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 263 PEFVKYLLDLGANPNLVNKYGDTPLHIA-ILNNNK----EIFKLLLNNGPSIK 310 (480)
T ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHH-HHhCCH----HHHHHHHhcCCCHH
Confidence 7777777665443322 223333333 334443 34555556664333
No 441
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.81 E-value=85 Score=30.05 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 540 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
-+++...++++.|....++.+.++|+++....--|-+|.+.|-..-|..-+....+.
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 366788899999999999999999999888888899999999999998888775544
No 442
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.77 E-value=39 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.5
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 044628 239 ALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSC 273 (665)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 273 (665)
-..|.-.+|..+|.+|++.|-.||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3457778899999999999988874 66666654
No 443
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=39.33 E-value=4.3e+02 Score=26.90 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHH--HHHhhCCCCCCHHHHHHHHH
Q 044628 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL--RDMLQGSFCPDEVTLASILS 372 (665)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll~ 372 (665)
..+..+...+++.|...++|+.--+.. ....-+.|+...|+... +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 445556666777777777766433221 12223456666665432 22222223456555544444
Q ss_pred HhCCCCchHhHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 044628 373 SCGSLSISCETRQVHAYAIKNGVQ---AFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSI 436 (665)
Q Consensus 373 ~~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 436 (665)
.+. .+.+..+- --...-..|...+-.+|++++|..++.+.. +.||.+|
T Consensus 115 tLr-------------~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm 165 (439)
T KOG1498|consen 115 TLR-------------TVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSM 165 (439)
T ss_pred HHH-------------HhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhh
Confidence 321 11111110 012233456777888999999999988865 4455444
No 444
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.00 E-value=32 Score=33.79 Aligned_cols=111 Identities=15% Similarity=0.039 Sum_probs=61.4
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChh-HHHHHHHHHHhcCCHHHHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSD-TLGAFIGACKVHGSIGLAKW 554 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 554 (665)
..|.+++|++.|...+. --+|....|..=..++.+.++...|+.-+... .+.||.. -|..--.+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34667777777766665 22334445555556666677777776666555 5555532 23333344556677777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 044628 555 AAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 555 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
.+..+.+++-+ ..+-..|-.+.-.++..++=...+
T Consensus 204 dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~ 238 (377)
T KOG1308|consen 204 DLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKY 238 (377)
T ss_pred HHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHH
Confidence 77777766644 233334444444444444444333
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.77 E-value=4.5e+02 Score=26.95 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCCH
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKE------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH---------AVRPDS 465 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 465 (665)
.+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-...|++........+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 346678899999999999999999663 33445666666666677777777766666553 112222
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
..+..+..-+. ++++.|.+.|-....
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCC
Confidence 33333333332 356666666555443
No 446
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.49 E-value=2.6e+02 Score=30.37 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=51.2
Q ss_pred HhcCChHHHHHHHHhC-C-CCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 044628 512 GRVGLLVEAYDLLASM-P-IEPR------SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583 (665)
Q Consensus 512 ~~~g~~~~A~~~~~~~-~-~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 583 (665)
.+..++..+.++|+.- . +..| ....+.|--+|....+.+.|.++++++-+.+|.++-.-.....+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 4455666666665543 1 1111 112333444455566777777777777777777766666677777777777
Q ss_pred HHHHHHHHHHhh
Q 044628 584 FDVARLRKMMRD 595 (665)
Q Consensus 584 ~~A~~~~~~m~~ 595 (665)
++|.........
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 777777666654
No 447
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=37.92 E-value=7.1e+02 Score=28.97 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHH
Q 044628 532 RSDTLGAFIGACKVHGS-------IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 589 (665)
++.-..+|++++...+. -+.=.-+.+.++++++-||.+-..|+..+.+=.++++.++.
T Consensus 772 npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~~ 836 (863)
T TIGR02414 772 NPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQE 836 (863)
T ss_pred CCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34457888888854332 12234456778899999999999999999999999887764
No 448
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=37.26 E-value=74 Score=32.32 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=21.1
Q ss_pred HHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 044628 590 RKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEE 642 (665)
Q Consensus 590 ~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 642 (665)
|+.|.+..+...+..|-. -..| ..|...++|. ...+.+-++.-
T Consensus 310 WqamiEeAiTr~esfsVm-----YtPf----atki~~d~ie-k~k~~F~k~HP 352 (569)
T PF15015_consen 310 WQAMIEEAITRAESFSVM-----YTPF----ATKIKADKIE-KVKEVFTKTHP 352 (569)
T ss_pred HHHHHHHHHhcccceeEE-----eecc----cccccHHHHH-HHHHHHHhhCc
Confidence 455555555554443331 1123 3366666665 45555555543
No 449
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.17 E-value=83 Score=30.58 Aligned_cols=78 Identities=12% Similarity=0.024 Sum_probs=51.7
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 497 ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGA-FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 497 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
+.-|+..|...+.-..+.|.+.+.-.++.+. ...| |+..|-. --.-+..+++++.++.++.+.+.++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3345555655555555556666666666666 3344 4556644 22335678899999999999999999999877644
Q ss_pred H
Q 044628 574 S 574 (665)
Q Consensus 574 ~ 574 (665)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 450
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.79 E-value=5.9e+02 Score=27.76 Aligned_cols=14 Identities=14% Similarity=0.040 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhC
Q 044628 179 EVGRRLHSFILKVG 192 (665)
Q Consensus 179 ~~a~~~~~~~~~~g 192 (665)
..+.++++...+.|
T Consensus 229 ~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG 242 (552)
T ss_pred hHHHHHHHHHHhhc
Confidence 44555555555554
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.67 E-value=71 Score=33.10 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=75.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhc
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEV-LSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRV 514 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 514 (665)
...+...+.++.|+.++.+.++. .||...|-.. ..++.+.+++..|+.=+..+++ ..|+ ...|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 44566778999999999999985 8887665444 3788899999999887777776 2343 22333333444556
Q ss_pred CChHHHHHHHHhC-CCCCChhHHHHHHHHHHhc
Q 044628 515 GLLVEAYDLLASM-PIEPRSDTLGAFIGACKVH 546 (665)
Q Consensus 515 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~ 546 (665)
+++.+|+..|+.. .+.|+..-....+.-|...
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 6778888877777 7788888888888777654
No 452
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.63 E-value=52 Score=31.79 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=36.9
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR 532 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 532 (665)
..+.|+.++|..+|+.... +.|+ +....-+........+.-+|-+++-++ .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3577999999999998876 4454 444444544555556677777777666 55553
No 453
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.03 E-value=3.2e+02 Score=24.44 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 470 EVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 470 ~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
.-|.-|...|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445566777777777777776665
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=3e+02 Score=26.71 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHhCCC
Q 044628 279 SKLGRQIHGLVIKQSFD 295 (665)
Q Consensus 279 ~~~a~~~~~~~~~~g~~ 295 (665)
+++-.+..+.+++.|..
T Consensus 171 V~e~lE~~~~~iEkGgD 187 (412)
T COG5187 171 VEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44445555555555543
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.68 E-value=3.4e+02 Score=24.64 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.1
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 044628 577 YASERCWFDVARLRKMMRD 595 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~ 595 (665)
..+.|++++|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4467888999998888875
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.56 E-value=3.8e+02 Score=25.20 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=35.0
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044628 419 LQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466 (665)
Q Consensus 419 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 466 (665)
..+|+-..+|.+.....|+..|. .+++++|.+++.++-+.|+.|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 44555555677777777777655 467899999999999999888653
No 457
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.50 E-value=2.5e+02 Score=25.48 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=27.9
Q ss_pred HHhcCCHHHHHHHHhcCCC------CChhHHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 044628 409 YSKCGSIAGALQCFGSVKE------PDLVTWTSIIG-AYAFHGL--SKESIEVFEKMLSH 459 (665)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 459 (665)
....|++++|..-++++.+ .-...|..+.. +++.++. +-+|.-++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 4455667777766666542 23345555554 5665543 44565555555543
No 458
>PRK14015 pepN aminopeptidase N; Provisional
Probab=35.11 E-value=7.9e+02 Score=28.68 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHhcCCH------HHH-HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHH
Q 044628 532 RSDTLGAFIGACKVHGSI------GLA-KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL 589 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~------~~a-~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 589 (665)
++.-.++|++++...+.. ..+ .-+.+.++++++.||.+-..|+..+.+-.++++.++.
T Consensus 782 npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 782 NPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred CCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 344578888888543322 333 4456778899999999999999999999999887764
No 459
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.38 E-value=62 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLS 458 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 458 (665)
---.+|.||.+.|++++|.+..+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334568888888899988888887765
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=40 Score=37.53 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=53.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHH
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIG 550 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 550 (665)
+|..+.+.|-.+-|+.+.+.-..+ ..+...+|+++.|++.-.+.. |..+|..|......+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 445556677777776665433221 234557888899888888764 6778999998888899988
Q ss_pred HHHHHHHHHHhc
Q 044628 551 LAKWAAEKLLEL 562 (665)
Q Consensus 551 ~a~~~~~~~~~~ 562 (665)
.|+..+++....
T Consensus 690 IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 690 IAEMCYQRTKNF 701 (1202)
T ss_pred HHHHHHHHhhhh
Confidence 888888876543
No 461
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.72 E-value=97 Score=19.49 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=23.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.+|..|+++-...+++++|..-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999888876654
No 462
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.45 E-value=3.7e+02 Score=24.38 Aligned_cols=95 Identities=19% Similarity=0.104 Sum_probs=52.1
Q ss_pred HHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCC----
Q 044628 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGV---- 395 (665)
Q Consensus 320 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~---- 395 (665)
+.++.+++..+.|.....+-++.-+.+++-+.|- ..+=.+++-.|.+.-++.+++.+++.+.+..+
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~ 167 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS 167 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334444445556666666555544444333221 11223455556666677777777776654221
Q ss_pred ----------CCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044628 396 ----------QAFLSIENALINAYSKCGSIAGALQCFGS 424 (665)
Q Consensus 396 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (665)
.+.-.+.|.-...+.++|.++.|..++++
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23334556666777777777777777764
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.31 E-value=4.9e+02 Score=25.81 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHHHHHhCCChHHHHHHHhc
Q 044628 202 ALVDLYGKCGFVEDARRVFDE 222 (665)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~ 222 (665)
....-||+-||-+.|.+.++.
T Consensus 109 ~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 344556666666666665554
No 464
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=6.7e+02 Score=27.08 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=24.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCcHHHHHHHHHHH
Q 044628 439 AYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC-SHGGLVSEGLRYFNLM 491 (665)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~ 491 (665)
.+.+.|-+..|+++.+-+......-|+.....+|+.| .++.+++--+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555555555555433222344444444433 2344455555555544
No 465
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.36 E-value=8.8e+02 Score=28.43 Aligned_cols=143 Identities=8% Similarity=-0.042 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCCh--------hhHHHHHHHHHhcCC
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY---HILPDS--------EHYTCLTDLLGRVGL 516 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~l~~~~~~~g~ 516 (665)
--.++|++..+ .+|-.+...+.-..+..|.++-+.+....+.+.+ ..+-+. .+|-.=+.++.....
T Consensus 674 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (932)
T PRK13184 674 FLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKED 750 (932)
T ss_pred hhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHcccc
Confidence 33444444443 2333444444455567788877777666665311 111111 123223445555666
Q ss_pred hHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCHHHHHHHHH
Q 044628 517 LVEAYDLLASMPIEPRS--DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 517 ~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
++++.+.+...+ |.. ..+..+..-+..+++.+.-..+.+.+-...+.. .......+.+|.-..+|++|-+++.
T Consensus 751 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (932)
T PRK13184 751 YEKAFKHLDNTD--PTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLN 828 (932)
T ss_pred HHHHHhhhhhCC--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHH
Confidence 777776666542 322 223333333445556655555555554443331 1222355667777888888888886
Q ss_pred HHhh
Q 044628 592 MMRD 595 (665)
Q Consensus 592 ~m~~ 595 (665)
.-..
T Consensus 829 ~~~~ 832 (932)
T PRK13184 829 RYPL 832 (932)
T ss_pred hCCh
Confidence 5543
No 466
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.34 E-value=7.3e+02 Score=27.47 Aligned_cols=49 Identities=14% Similarity=-0.075 Sum_probs=30.4
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHH--HHhcCChHHHHHHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPD-----SEHYTCLTDL--LGRVGLLVEAYDLLA 525 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~--~~~~g~~~~A~~~~~ 525 (665)
-.|++..|.+..+.+.....-.|+ ...+..++.+ +...|+++.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357788899988888763222222 1222222222 335699999999997
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.29 E-value=3e+02 Score=22.95 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNL 490 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 490 (665)
.+.++|+.|...|+--... -|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666666554443 344444455556666666666653
No 468
>PHA02798 ankyrin-like protein; Provisional
Probab=32.25 E-value=5e+02 Score=27.68 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=57.9
Q ss_pred HHHHHHhCCCCchHHHHHhhhCCCCCCcch---HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHh
Q 044628 135 LISGIINCGGNVTPYFRRMLLDNVRLDHIT---FNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFV--SSALVDLYGK 209 (665)
Q Consensus 135 li~~~~~~~~~~~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 209 (665)
++.-|........++.+.+.+.|..+|... .+.+..++..........++.+.+++.|..++... ..+-+...+.
T Consensus 39 ~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~ 118 (489)
T PHA02798 39 IFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLS 118 (489)
T ss_pred HHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHH
Confidence 444455555445777777777777665321 11221121111122334677778888887665321 2222333333
Q ss_pred CC---ChHHHHHHHhccCCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 044628 210 CG---FVEDARRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGD 262 (665)
Q Consensus 210 ~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 262 (665)
.| ..+-..-+++.-... |..-++.+ ..+++.|.. .-.++.+.+.+.|..++
T Consensus 119 ~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL-~~a~~~~~~-~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 119 NGYINNLEILLFMIENGADTTLLDKDGFTML-QVYLQSNHH-IDIEIIKLLLEKGVDIN 175 (489)
T ss_pred cCCcChHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCc-chHHHHHHHHHhCCCcc
Confidence 33 444444454443322 22233333 334444431 12334444555665554
No 469
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.05 E-value=2.9e+02 Score=22.81 Aligned_cols=60 Identities=15% Similarity=-0.049 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHH-------HHhC-CCCCC-hhHHHHHH----HHHHhcCCHHHHHHHHHHHHh
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDL-------LASM-PIEPR-SDTLGAFI----GACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~-------~~~~-~~~p~-~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~ 561 (665)
.++..|..++.+.|++++++.- |++- .+..| -..|-+.+ .++...|+.++|...|+..-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4566777788888888776554 3333 34444 44565554 456678899999988887754
No 470
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.63 E-value=4.4e+02 Score=24.74 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 044628 545 VHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~ 565 (665)
..++...|...++++++++|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 345778899999999999987
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.51 E-value=50 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=24.0
Q ss_pred cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 044628 341 QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSC 374 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 374 (665)
..|.-..|-.+|++|.+.|-.||. ++.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345566799999999999999985 45565544
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.54 E-value=8.8e+02 Score=27.84 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=88.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 486 (665)
.....||+++.|++.-.++. |...|..|...-...|+.+-|...|++.+. |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 35678899999988877765 566899999999999999999988888764 2222233555688877766
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 487 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
+.+.+.. ..|... ....-.-.|+.++=.++++..+..|- .|. ....+|.-++|+++.+++-.
T Consensus 720 m~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 6655543 122211 11112235888888889888864432 222 23468888999999888765
No 473
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=30.09 E-value=1.3e+02 Score=18.13 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHH
Q 044628 548 SIGLAKWAAEKLLELEPSKPVNYALVS 574 (665)
Q Consensus 548 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 574 (665)
.++.|..++++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467788888888877765 56665443
No 474
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.06 E-value=4.3e+02 Score=24.14 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIA-FLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
.....+.++..+...|+++.|-+.|.-+++.. ..|... |..=+.-+.+.+.-....++++.+.
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 34567788889999999999999999998863 445443 3322333444443333334444443
No 475
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=9.2e+02 Score=27.93 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=26.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 516 (665)
.......|.+..|.+++.++.+..+-.++..+|..++.++...|.
T Consensus 1238 ~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1238 KKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 333444566666666666666655666666666666666655554
No 476
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=29.89 E-value=3.3e+02 Score=22.72 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHH
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTL-GAFIGACKVHGSIGLAKWAAE 557 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~ 557 (665)
.+..++..++.=.|..++|.++++...-.+.-... ..++..|+...+-++-.++-+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34445555555566666666666655433332222 234555555555444444433
No 477
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.68 E-value=5.6e+02 Score=25.33 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=87.5
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044628 386 VHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464 (665)
Q Consensus 386 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 464 (665)
+++.+...++-+......+-++...+...++-+.++++... ..|.. .++.. +-.+.+.-++++.+. +.|=
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p------~a~~e--kr~~Vla~lkeLe~e-v~pi 92 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP------NALVE--KRTEVLAELKELEEE-VAPI 92 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch------HHHHH--HHHHHHHHHHHHHHH-HHHH
Confidence 34444445555555666666777777777888888877763 11111 11111 112223333333322 1110
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHh---CCCCCCh----hHH
Q 044628 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLAS---MPIEPRS----DTL 536 (665)
Q Consensus 465 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~----~~~ 536 (665)
. .+.--=........-.+....++.+.+++++.|+ .++.-........+|++..|-+.+-- .-..||. ..|
T Consensus 93 v-~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalw 171 (432)
T KOG2758|consen 93 V-KVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALW 171 (432)
T ss_pred H-HHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHH
Confidence 0 0000001111112223446788888888999887 44555666677789999999886433 3223443 456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 537 GAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 537 ~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
+-|.+-- -..+++.|.+-+.++.+
T Consensus 172 GKlASEI-L~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 172 GKLASEI-LTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 6555432 34478888887777655
No 478
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.37 E-value=1.4e+02 Score=23.12 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCC
Q 044628 82 GKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGG 144 (665)
Q Consensus 82 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~ 144 (665)
...+++.+.+.|+-.+. .+ -...+..-+.+.+.++++-++.++...|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvlt~~-~~---~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTDS-MA---ESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCHH-HH---HHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 44677788877753322 22 2223344577899999999999999999999998865554
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.33 E-value=4.4e+02 Score=23.95 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 044628 332 WNTMVVGFGQNGDGREAVKLLR 353 (665)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~ 353 (665)
-|.-...|.+.|..|.|+.+++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHh
Confidence 3444555666666666666665
No 480
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=29.30 E-value=34 Score=18.85 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=8.6
Q ss_pred CCCCCCCCCCcccc
Q 044628 1 MLSRCPAPPIFTVH 14 (665)
Q Consensus 1 ~~~~~~~p~~~~~~ 14 (665)
|.|++|..|.++-.
T Consensus 1 masstpaspapsdi 14 (29)
T PF05570_consen 1 MASSTPASPAPSDI 14 (29)
T ss_pred CCcCCCCCCCcHHH
Confidence 66777766655443
No 481
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.30 E-value=5.2e+02 Score=24.83 Aligned_cols=110 Identities=14% Similarity=-0.018 Sum_probs=49.6
Q ss_pred hCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCHhhHHHHHHHHhccCCcH-HHH
Q 044628 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV----FNLMRLEGMKGDYFTFSSLVNSCGTLGSSK-LGR 283 (665)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 283 (665)
+.+++++|.+++.. =...+.++|+...|-++ ++-..+.++.+|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34555666655432 12334445554443333 233334455555555444444443332211 222
Q ss_pred HHHHHHHHh---CC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 044628 284 QIHGLVIKQ---SF--DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNV 329 (665)
Q Consensus 284 ~~~~~~~~~---g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 329 (665)
++...+++. |- ..|+.....+...|.+.|++.+|+.-|-.-.+++.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 333333322 21 23667777888888888888888877755443333
No 482
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.28 E-value=1.9e+02 Score=22.15 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHH
Q 044628 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247 (665)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 247 (665)
..+++.+.+.|+-. ....-...+...+.+.|.++++.++.++..+|.+...++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34666677666432 222222334456678888888888888888888888888777765433
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.23 E-value=2.5e+02 Score=29.95 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCC--Cc---hhHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 044628 201 SALVDLYGKCGFVEDARRVFDEVLCR--DL---VLWNVMVSCYALNCLGDGAIAVFNLMRLE 257 (665)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (665)
..|+.-|.+.+++++|..++..|.-. .. .+.+.+.+.+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35667799999999999999888432 12 23444555555555455555555555443
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.11 E-value=2e+02 Score=25.48 Aligned_cols=36 Identities=6% Similarity=0.047 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044628 444 GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479 (665)
Q Consensus 444 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 479 (665)
++.-.|.++++++.+.+..++..|....|..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444444444444444444444444444444444
No 485
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.00 E-value=2.6e+02 Score=24.05 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 480 (665)
..++..+.+.++.-.|.++++++.+.+...+..|....|..+...|.
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34555555555556677777777766655555665555566655554
No 486
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=28.76 E-value=26 Score=35.83 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=86.2
Q ss_pred ccCCChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHhhcCCChHHHHHHHcccC--CCCc----
Q 044628 58 STHSAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQ--VLHVYVKCKAFDDMEKLFDEMR--VRNI---- 129 (665)
Q Consensus 58 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~f~~~~--~~~~---- 129 (665)
|+.||.++|.+=..+.-+......|+..+..++ ||...-.. -=..-...|.-..-+++|+.+. .|.+
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~c 484 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMC 484 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHHh
Confidence 677777777654444444445555665555443 33322211 0001112344566678898876 3332
Q ss_pred ------ccHHHHHHHHHhCCCCc-hHHHHHhhhCCCCCCcchHHHH-HHHHhcCCChHHHHHHHHHHHHhCCCCchHHHH
Q 044628 130 ------VTWNTLISGIINCGGNV-TPYFRRMLLDNVRLDHITFNSL-LRACVQADDIEVGRRLHSFILKVGFGLNCFVSS 201 (665)
Q Consensus 130 ------~~~~~li~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 201 (665)
.-||.|..++.++-.+. +.+=.+|...|-.-+.++...= ...-+...+..+++++-.+-+=.-+.|...+|.
T Consensus 485 tk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twG 564 (650)
T KOG4334|consen 485 TKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWG 564 (650)
T ss_pred hhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHH
Confidence 34888888888877664 6666667666655554432110 001112245677888877777666789999999
Q ss_pred HHHHHHHhC
Q 044628 202 ALVDLYGKC 210 (665)
Q Consensus 202 ~li~~~~~~ 210 (665)
+|+++|.+.
T Consensus 565 SlLriYGr~ 573 (650)
T KOG4334|consen 565 SLLRIYGRL 573 (650)
T ss_pred HHHHHhhhh
Confidence 999999876
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.70 E-value=1.6e+02 Score=23.75 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccC
Q 044628 304 LVDMYAKNGNIDDACRVFDGMT 325 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~ 325 (665)
++.-|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444444455555555555543
No 488
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.64 E-value=2.6e+02 Score=30.47 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHhcc------CCCCchhHHHHHHHHHhcCCch------HHHHHHHHHHHCCCCCCHhhHHHH
Q 044628 202 ALVDLYGKCGFVEDARRVFDEV------LCRDLVLWNVMVSCYALNCLGD------GAIAVFNLMRLEGMKGDYFTFSSL 269 (665)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 269 (665)
+|+.+|...|++-.+.++++.. .+.=...||..|+.+.+.|.++ .|.++++...-.| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHHhccCCcHHHHHHHHHHHHh
Q 044628 270 VNSCGTLGSSKLGRQIHGLVIKQ 292 (665)
Q Consensus 270 l~~~~~~~~~~~a~~~~~~~~~~ 292 (665)
+.+....-.-..+.-++...+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
No 489
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.07 E-value=2.2e+02 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHH
Q 044628 310 KNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 310 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 348 (665)
...+.+.|.++++.++.+...+|.....++-..|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345567777777777777777777777777666655443
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.83 E-value=2.7e+02 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 044628 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLG 277 (665)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 277 (665)
.++..+...++.-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333334444445555555555554444444444444443333
No 491
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.00 E-value=3.4e+02 Score=23.33 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 044628 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNS 272 (665)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 272 (665)
.++..+.+.+..-.|.++|+++.+.+...+..|....|+.
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~ 64 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKL 64 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 3444444444444455555555544433333333333333
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.97 E-value=7e+02 Score=25.56 Aligned_cols=27 Identities=7% Similarity=-0.196 Sum_probs=16.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH
Q 044628 439 AYAFHGLSKESIEVFEKMLSHAVRPDS 465 (665)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 465 (665)
.+...+++..|.++|+++......|+.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 445666777777777777766444443
No 493
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.86 E-value=5.7e+02 Score=25.13 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=37.8
Q ss_pred hHHHHHHHHHc---CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCc
Q 044628 331 SWNTMVVGFGQ---NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379 (665)
Q Consensus 331 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 379 (665)
.+-.+|+++.+ ..+.+.|+-++.+|.+.|-.|....-..++-++-.-|.
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34445666654 57899999999999999988988887777777766664
No 494
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.83 E-value=6.6e+02 Score=25.21 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHH
Q 044628 405 LINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESI-EVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSE 483 (665)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 483 (665)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+... .+++.+... ||..+...++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 4556666666655555555554433333444444444443333333 333333332 777777778887777666655
Q ss_pred HHHHHHHHHH
Q 044628 484 GLRYFNLMIS 493 (665)
Q Consensus 484 a~~~~~~~~~ 493 (665)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554555554
No 495
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.71 E-value=1e+03 Score=27.31 Aligned_cols=170 Identities=13% Similarity=0.097 Sum_probs=87.9
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHH
Q 044628 170 RACVQADDIEVGRRLHSFILKVGFGLNC--FVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGA 247 (665)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 247 (665)
+.|...|++++|.++-+.- |+. .++..-.+.|...+++..|-+++.++ ..++..+.--|....+.+ +
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-H
Confidence 4455667777776654322 332 23444456777788888888888877 334555555555555555 5
Q ss_pred HHHHHHHHHCCCCCCHhhHHH-----HHHHH-hccCCcH----HHHHHHHH--------HHHh-CCCCchhHHHHHHHHH
Q 044628 248 IAVFNLMRLEGMKGDYFTFSS-----LVNSC-GTLGSSK----LGRQIHGL--------VIKQ-SFDLDVLVATSLVDMY 308 (665)
Q Consensus 248 ~~~~~~m~~~g~~p~~~t~~~-----ll~~~-~~~~~~~----~a~~~~~~--------~~~~-g~~~~~~~~~~li~~~ 308 (665)
+..|-.=+-..++|...+=.. ++..+ .+.++++ ++..-++. +.+. ....+.....+.....
T Consensus 435 L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~ 514 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLL 514 (911)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHH
Confidence 555544333445554433222 22222 2223322 22221111 1111 1112223334444455
Q ss_pred HhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHH
Q 044628 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355 (665)
Q Consensus 309 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 355 (665)
...|+.+....+-.-|.+ |..++.-+++.|.+++|++++..-
T Consensus 515 ~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 515 ASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666555444432 666777788888888888877553
No 496
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.36 E-value=6e+02 Score=24.60 Aligned_cols=183 Identities=10% Similarity=-0.064 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--CCcHHHHH
Q 044628 413 GSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGL-----SKESIEVFEKMLSHAVRPDSIAFLEVLSACSH--GGLVSEGL 485 (665)
Q Consensus 413 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~ 485 (665)
+++..|...+..........=...+..+...|. ..+|.++|+.+-+.| .|........+..... ..+..+|.
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~a~~~lg~~~~~G~gv~~d~~~A~ 133 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAEALFNLGLMYANGRGVPLDLVKAL 133 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHHHHHhHHHHHhcCCCcccCHHHHH
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CChH--HHHHHHHhCCCCCChhHHHHHHHHH----HhcCCHHHHHH
Q 044628 486 RYFNLMISDYHILPDSEHYTCLTDLLGRV-----GLLV--EAYDLLASMPIEPRSDTLGAFIGAC----KVHGSIGLAKW 554 (665)
Q Consensus 486 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~--~A~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~ 554 (665)
.+|+.+.+ .|..+.......+...|..- -..+ .|...+.++-..-+......|...| ....|.++|..
T Consensus 134 ~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 134 KYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHH
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcC---------------CHHHHHHHHHHHhhCCCcc
Q 044628 555 AAEKLLELEPSKPVNYALVSNVYASER---------------CWFDVARLRKMMRDNCDHK 600 (665)
Q Consensus 555 ~~~~~~~~~p~~~~~~~~l~~~y~~~g---------------~~~~A~~~~~~m~~~~~~~ 600 (665)
.++++-+.+. ......++ ++...| +...|...+......+...
T Consensus 213 wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 213 WYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.61 E-value=1.9e+02 Score=27.55 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 044628 438 GAYAFHGLSKESIEVFEKM 456 (665)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m 456 (665)
.-|...|++++|+++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444455554444444
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.60 E-value=7.5e+02 Score=25.45 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccCCC------CchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 044628 198 FVSSALVDLYGKCGFVEDARRVFDEVLCR------DLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256 (665)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (665)
..+.-+.+.|..||+++.|.+.+.+...- -+..|-.+|..-...|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45677778888899999999888774321 122455566666666777766666655544
No 499
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.14 E-value=1.9e+02 Score=28.35 Aligned_cols=69 Identities=6% Similarity=-0.176 Sum_probs=56.4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 529 IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL-VSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 529 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
...|+..|...+..-.+.|.+.+-..++.+++...|.|...|.. -.--|...++++.++.++.+....+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 34578889988888788888999999999999999999988875 4556778899999999888665443
No 500
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.00 E-value=1.5e+02 Score=30.48 Aligned_cols=57 Identities=14% Similarity=0.006 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASMPIEP----------RSDTLGAFIGACKVHGSIGLAKWAAEKLL 560 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 560 (665)
...|+++.+-.|++..|++.++.+.+.. ...++--+.-+|...+++..|.+.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777777777663221 12223333344455555555555555544
Done!