Query 044628
Match_columns 665
No_of_seqs 817 out of 4442
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 08:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.7E-43 3E-47 383.2 34.0 479 108-597 63-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-40 6.1E-45 364.7 26.2 492 61-579 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-26 1.4E-30 236.0 40.6 370 169-582 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1E-28 3.6E-33 260.1 18.2 209 147-377 10-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-25 1.2E-29 229.0 40.3 352 235-596 6-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.8E-32 252.3 20.8 184 330-514 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.7E-23 1.6E-27 221.4 33.0 426 164-597 8-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2E-22 6.7E-27 212.7 33.0 321 229-592 27-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.1E-21 3.9E-26 210.5 32.1 438 100-573 8-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 3.9E-21 1.3E-25 207.7 34.1 422 163-597 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.2E-25 198.9 31.7 320 247-597 11-359 (450)
12 3fp2_A TPR repeat-containing p 99.9 9.4E-20 3.2E-24 196.8 32.0 423 136-571 32-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.5E-18 1.5E-22 173.0 33.5 297 271-596 11-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 9.8E-18 3.3E-22 170.5 33.1 310 229-581 4-354 (359)
15 3hym_B Cell division cycle pro 99.8 1.9E-17 6.5E-22 166.3 29.3 183 400-583 126-321 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 3.6E-15 1.2E-19 166.1 48.7 382 162-589 985-1377(1630)
17 1b89_A Protein (clathrin heavy 99.8 6.7E-18 2.3E-22 169.3 22.6 318 209-562 15-341 (449)
18 2xm6_A Protein corresponding t 99.8 5.5E-16 1.9E-20 165.0 37.5 366 196-580 38-453 (490)
19 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.2E-20 164.1 40.0 209 382-596 256-492 (530)
20 3hym_B Cell division cycle pro 99.8 6.3E-17 2.1E-21 162.5 26.8 263 295-596 19-299 (330)
21 1b89_A Protein (clathrin heavy 99.8 2.2E-17 7.4E-22 165.6 22.6 220 110-358 15-236 (449)
22 1fch_A Peroxisomal targeting s 99.8 4.2E-17 1.4E-21 166.7 23.3 281 309-593 36-356 (368)
23 2xm6_A Protein corresponding t 99.7 1.1E-14 3.6E-19 155.1 39.3 353 225-598 36-434 (490)
24 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.6E-20 150.2 28.6 269 308-590 9-288 (291)
25 2ooe_A Cleavage stimulation fa 99.7 5.4E-15 1.8E-19 159.0 36.2 398 161-565 12-495 (530)
26 1xi4_A Clathrin heavy chain; a 99.7 1.5E-13 5.2E-18 153.3 46.9 401 98-547 985-1415(1630)
27 4g1t_A Interferon-induced prot 99.7 1.3E-15 4.5E-20 161.4 29.9 364 197-607 51-470 (472)
28 4eqf_A PEX5-related protein; a 99.7 4.7E-17 1.6E-21 166.3 17.9 261 328-592 64-352 (365)
29 1fch_A Peroxisomal targeting s 99.7 1.2E-16 4.2E-21 163.3 20.7 268 268-560 69-357 (368)
30 3cv0_A Peroxisome targeting si 99.7 3.9E-16 1.3E-20 156.4 20.5 254 301-593 24-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.8E-20 150.1 20.4 247 336-597 6-265 (291)
32 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.6E-22 177.8 8.8 150 194-343 124-286 (1134)
33 4eqf_A PEX5-related protein; a 99.7 3.3E-15 1.1E-19 152.5 24.3 257 272-558 74-352 (365)
34 3spa_A Mtrpol, DNA-directed RN 99.7 5.9E-17 2E-21 175.0 7.8 132 394-526 122-261 (1134)
35 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.9E-19 153.4 25.5 383 159-574 48-471 (472)
36 3cv0_A Peroxisome targeting si 99.7 1.5E-14 5.3E-19 144.7 24.2 264 229-562 22-315 (327)
37 2pl2_A Hypothetical conserved 99.6 1.2E-14 4.2E-19 136.1 18.5 194 396-594 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 5.1E-14 1.7E-18 135.6 20.6 219 330-596 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.6 4.1E-14 1.4E-18 136.2 16.5 236 298-575 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-13 4.5E-18 134.2 20.3 241 341-590 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.5 5.6E-13 1.9E-17 139.7 23.4 369 168-592 9-417 (452)
42 3u4t_A TPR repeat-containing p 99.5 2.9E-13 9.8E-18 131.7 18.9 245 300-581 5-269 (272)
43 2ho1_A Type 4 fimbrial biogene 99.5 7.8E-13 2.7E-17 126.9 21.0 197 399-597 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.5 1.2E-12 4.1E-17 122.9 21.6 198 398-597 7-212 (225)
45 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-13 9.7E-18 129.1 15.8 197 398-597 22-223 (243)
46 2ho1_A Type 4 fimbrial biogene 99.5 6.3E-12 2.2E-16 120.5 23.0 205 329-571 37-247 (252)
47 2h6f_A Protein farnesyltransfe 99.5 2.2E-12 7.6E-17 130.9 20.5 242 331-580 99-366 (382)
48 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-11 4.2E-16 129.5 26.7 344 233-598 8-389 (452)
49 2q7f_A YRRB protein; TPR, prot 99.5 7.3E-13 2.5E-17 126.2 16.0 215 328-581 22-241 (243)
50 3vtx_A MAMA; tetratricopeptide 99.5 3.9E-12 1.3E-16 115.5 20.1 165 429-597 4-171 (184)
51 1ouv_A Conserved hypothetical 99.5 1.3E-11 4.5E-16 120.0 24.1 224 328-598 5-253 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-12 6.9E-17 125.7 18.3 219 374-597 15-245 (275)
53 4a1s_A PINS, partner of inscut 99.4 5.1E-13 1.7E-17 138.6 14.4 265 300-595 50-371 (411)
54 1ouv_A Conserved hypothetical 99.4 1.8E-11 6.2E-16 119.0 24.1 225 296-566 4-255 (273)
55 2vq2_A PILW, putative fimbrial 99.4 1.2E-11 4E-16 116.1 21.9 208 328-573 7-222 (225)
56 3sf4_A G-protein-signaling mod 99.4 2.5E-12 8.4E-17 132.9 18.3 266 296-595 7-335 (406)
57 2h6f_A Protein farnesyltransfe 99.4 2.9E-12 9.9E-17 130.1 18.1 225 365-596 98-348 (382)
58 4abn_A Tetratricopeptide repea 99.4 1.1E-12 3.8E-17 138.3 15.6 192 398-593 101-318 (474)
59 3u4t_A TPR repeat-containing p 99.4 1.6E-11 5.5E-16 119.1 22.8 239 263-540 3-262 (272)
60 3sf4_A G-protein-signaling mod 99.4 1.7E-12 5.9E-17 134.1 16.4 283 270-584 16-364 (406)
61 3ro2_A PINS homolog, G-protein 99.4 1.4E-12 4.8E-17 130.6 15.2 265 301-596 8-332 (338)
62 2pl2_A Hypothetical conserved 99.4 7.2E-12 2.4E-16 117.2 18.9 192 295-526 2-210 (217)
63 4e6h_A MRNA 3'-END-processing 99.4 1E-09 3.5E-14 118.9 35.5 409 161-577 65-584 (679)
64 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 3.9E-16 112.4 16.3 167 398-567 4-175 (184)
65 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-11 4E-16 135.7 17.4 162 429-595 8-173 (723)
66 4a1s_A PINS, partner of inscut 99.3 6.8E-12 2.3E-16 130.0 14.2 270 264-565 49-375 (411)
67 2ond_A Cleavage stimulation fa 99.3 2.8E-10 9.7E-15 112.7 25.1 185 381-568 81-276 (308)
68 3ro2_A PINS homolog, G-protein 99.3 2.2E-11 7.5E-16 121.9 16.9 236 299-565 44-335 (338)
69 4e6h_A MRNA 3'-END-processing 99.3 4.1E-09 1.4E-13 114.2 35.2 413 182-597 52-571 (679)
70 3as5_A MAMA; tetratricopeptide 99.3 5.1E-11 1.7E-15 107.8 16.9 160 434-596 12-173 (186)
71 3ulq_A Response regulator aspa 99.3 1.7E-10 5.7E-15 118.3 21.5 228 304-561 109-367 (383)
72 3nf1_A KLC 1, kinesin light ch 99.3 4.1E-12 1.4E-16 125.9 8.4 239 329-595 27-306 (311)
73 4i17_A Hypothetical protein; T 99.3 8.2E-11 2.8E-15 110.9 16.7 164 430-596 7-209 (228)
74 2ond_A Cleavage stimulation fa 99.3 3.7E-10 1.3E-14 111.8 21.9 212 382-598 34-272 (308)
75 4abn_A Tetratricopeptide repea 99.3 6.3E-11 2.2E-15 124.9 16.5 178 415-597 84-288 (474)
76 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 8.9E-15 103.0 18.0 168 400-570 9-181 (186)
77 3ulq_A Response regulator aspa 99.3 4.6E-11 1.6E-15 122.5 14.5 195 400-595 144-367 (383)
78 3nf1_A KLC 1, kinesin light ch 99.2 1.2E-11 4.1E-16 122.5 9.6 236 296-565 25-310 (311)
79 4i17_A Hypothetical protein; T 99.2 3.5E-10 1.2E-14 106.5 18.5 204 363-578 6-225 (228)
80 1hz4_A MALT regulatory protein 99.2 3.2E-09 1.1E-13 108.2 26.2 195 402-596 96-322 (373)
81 3q15_A PSP28, response regulat 99.2 3.5E-10 1.2E-14 115.6 16.0 194 401-595 143-364 (378)
82 3q15_A PSP28, response regulat 99.1 8.2E-09 2.8E-13 105.4 24.4 224 338-563 110-366 (378)
83 3edt_B KLC 2, kinesin light ch 99.1 8.2E-10 2.8E-14 107.4 14.6 221 375-595 12-280 (283)
84 3qky_A Outer membrane assembly 99.1 4.5E-09 1.5E-13 101.2 19.2 84 537-643 152-248 (261)
85 4gyw_A UDP-N-acetylglucosamine 99.1 6.2E-10 2.1E-14 122.1 13.4 163 398-565 8-177 (723)
86 1qqe_A Vesicular transport pro 99.1 2.4E-09 8E-14 105.1 15.3 201 379-594 32-267 (292)
87 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.5E-08 5.2E-13 94.9 19.7 178 402-599 7-216 (225)
88 1qqe_A Vesicular transport pro 99.0 4.8E-09 1.6E-13 102.8 16.9 242 281-570 3-277 (292)
89 1hz4_A MALT regulatory protein 99.0 5.8E-08 2E-12 98.8 25.0 50 408-457 224-280 (373)
90 2fo7_A Synthetic consensus TPR 99.0 6E-09 2.1E-13 88.2 14.1 123 472-596 8-132 (136)
91 3mv2_B Coatomer subunit epsilo 99.0 6.2E-08 2.1E-12 93.2 22.0 174 418-596 85-282 (310)
92 4ga2_A E3 SUMO-protein ligase 99.0 2.8E-10 9.7E-15 99.1 5.3 139 439-582 6-149 (150)
93 3qky_A Outer membrane assembly 99.0 5.6E-09 1.9E-13 100.5 14.9 186 398-586 14-251 (261)
94 2pzi_A Probable serine/threoni 99.0 1.4E-09 4.8E-14 119.9 11.0 143 431-579 434-580 (681)
95 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.6E-13 85.5 15.4 131 432-565 3-135 (136)
96 3qou_A Protein YBBN; thioredox 99.0 1.3E-08 4.4E-13 99.4 16.2 174 416-594 103-282 (287)
97 3edt_B KLC 2, kinesin light ch 98.9 2.3E-08 7.8E-13 97.0 16.9 164 400-563 86-282 (283)
98 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-09 4.3E-14 95.0 6.4 122 471-595 3-128 (150)
99 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.6E-12 90.8 20.6 240 308-569 23-289 (310)
100 2r5s_A Uncharacterized protein 98.9 8.1E-09 2.8E-13 92.6 11.4 155 435-594 11-171 (176)
101 3rjv_A Putative SEL1 repeat pr 98.9 1E-07 3.4E-12 88.3 19.1 172 418-598 5-199 (212)
102 3gyz_A Chaperone protein IPGC; 98.9 1E-08 3.5E-13 88.8 10.7 101 497-597 31-134 (151)
103 2ifu_A Gamma-SNAP; membrane fu 98.8 5.9E-08 2E-12 95.8 16.8 220 342-589 4-254 (307)
104 2vsy_A XCC0866; transferase, g 98.8 3.2E-08 1.1E-12 107.1 15.7 159 412-574 2-169 (568)
105 3urz_A Uncharacterized protein 98.8 6.1E-08 2.1E-12 89.5 14.5 153 407-565 12-189 (208)
106 4gco_A Protein STI-1; structur 98.8 2.6E-08 8.8E-13 83.6 10.5 108 467-576 15-124 (126)
107 2pzi_A Probable serine/threoni 98.8 8.6E-08 2.9E-12 105.6 17.6 191 375-571 402-611 (681)
108 2vsy_A XCC0866; transferase, g 98.8 7E-08 2.4E-12 104.3 16.5 145 378-527 3-154 (568)
109 2vgx_A Chaperone SYCD; alterna 98.8 2.8E-08 9.4E-13 86.1 9.8 97 500-596 20-118 (148)
110 2ifu_A Gamma-SNAP; membrane fu 98.8 4.1E-08 1.4E-12 96.9 12.2 196 377-594 4-222 (307)
111 4gco_A Protein STI-1; structur 98.8 4.2E-08 1.4E-12 82.3 10.4 100 497-596 8-110 (126)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.1E-07 7.2E-12 87.1 16.3 184 365-569 5-220 (225)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.4E-07 4.7E-12 87.4 14.6 127 433-565 9-153 (213)
114 3urz_A Uncharacterized protein 98.7 7.8E-08 2.7E-12 88.8 12.3 160 432-597 6-187 (208)
115 3u3w_A Transcriptional activat 98.7 1.7E-06 5.9E-11 84.5 21.7 161 435-595 80-265 (293)
116 3dra_A Protein farnesyltransfe 98.7 1.4E-06 4.8E-11 84.7 20.6 179 414-595 84-286 (306)
117 3qou_A Protein YBBN; thioredox 98.7 1.2E-07 4E-12 92.5 13.0 132 463-597 114-249 (287)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.1E-07 2.8E-11 82.1 18.2 129 402-533 9-154 (213)
119 2uy1_A Cleavage stimulation fa 98.7 9E-06 3.1E-10 85.4 28.2 201 347-561 197-412 (493)
120 2r5s_A Uncharacterized protein 98.7 1.5E-07 5.3E-12 84.2 12.7 155 402-561 9-172 (176)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 5E-07 1.7E-11 88.4 16.9 163 432-594 77-264 (293)
122 1a17_A Serine/threonine protei 98.6 3.3E-07 1.1E-11 80.7 13.5 127 467-595 15-145 (166)
123 1na0_A Designed protein CTPR3; 98.6 3.6E-07 1.2E-11 75.8 12.8 114 466-581 10-125 (125)
124 2c2l_A CHIP, carboxy terminus 98.6 8.5E-08 2.9E-12 93.2 10.1 190 399-596 4-199 (281)
125 2xcb_A PCRH, regulatory protei 98.6 3.1E-07 1.1E-11 78.8 12.6 96 501-596 18-115 (142)
126 1p5q_A FKBP52, FK506-binding p 98.6 1.5E-07 5.1E-12 94.1 11.6 94 501-594 196-292 (336)
127 2lni_A Stress-induced-phosphop 98.6 3.3E-07 1.1E-11 77.2 12.0 115 466-582 17-133 (133)
128 2vyi_A SGTA protein; chaperone 98.6 3.2E-07 1.1E-11 76.9 11.7 116 466-583 13-130 (131)
129 2e2e_A Formate-dependent nitri 98.6 1.5E-07 5.2E-12 84.3 9.4 120 476-597 21-145 (177)
130 2uy1_A Cleavage stimulation fa 98.6 3.8E-05 1.3E-09 80.6 29.0 335 112-458 28-412 (493)
131 3dra_A Protein farnesyltransfe 98.6 2.9E-05 1E-09 75.3 25.9 160 413-575 124-301 (306)
132 1hxi_A PEX5, peroxisome target 98.5 2.1E-07 7E-12 77.4 8.5 96 502-597 18-115 (121)
133 3rjv_A Putative SEL1 repeat pr 98.5 4.8E-06 1.6E-10 76.9 18.3 173 383-565 5-200 (212)
134 3upv_A Heat shock protein STI1 98.5 6.6E-07 2.2E-11 74.8 11.3 96 501-596 4-101 (126)
135 2kck_A TPR repeat; tetratricop 98.5 6.8E-07 2.3E-11 72.5 10.2 99 500-598 5-108 (112)
136 3u3w_A Transcriptional activat 98.5 2E-05 6.7E-10 76.9 22.4 158 405-562 81-266 (293)
137 2vgx_A Chaperone SYCD; alterna 98.5 3.1E-07 1.1E-11 79.4 8.3 108 462-571 17-127 (148)
138 3gyz_A Chaperone protein IPGC; 98.5 1.2E-06 3.9E-11 75.8 11.5 103 461-566 31-137 (151)
139 4gcn_A Protein STI-1; structur 98.5 5.4E-07 1.9E-11 75.5 9.1 94 502-595 9-111 (127)
140 3q49_B STIP1 homology and U bo 98.5 1.4E-06 4.8E-11 73.9 11.7 99 499-597 7-107 (137)
141 4f3v_A ESX-1 secretion system 98.5 1.1E-06 3.7E-11 83.4 11.8 182 411-597 18-238 (282)
142 2e2e_A Formate-dependent nitri 98.5 1.4E-06 4.8E-11 77.8 12.1 129 441-572 21-154 (177)
143 2qfc_A PLCR protein; TPR, HTH, 98.4 5.3E-06 1.8E-10 81.0 16.9 162 401-562 77-266 (293)
144 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-06 3.7E-11 77.5 10.7 107 466-574 12-120 (164)
145 3gw4_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 76.6 14.8 129 467-595 28-175 (203)
146 1elw_A TPR1-domain of HOP; HOP 98.4 1.9E-06 6.5E-11 70.5 11.4 94 502-595 5-100 (118)
147 1elw_A TPR1-domain of HOP; HOP 98.4 3E-06 1E-10 69.2 12.4 109 467-577 6-116 (118)
148 2fbn_A 70 kDa peptidylprolyl i 98.4 1.6E-06 5.5E-11 79.1 11.7 169 408-597 13-187 (198)
149 2lni_A Stress-induced-phosphop 98.4 1.7E-06 5.8E-11 72.7 11.0 98 499-596 14-113 (133)
150 2xcb_A PCRH, regulatory protei 98.4 1.1E-06 3.8E-11 75.2 9.7 108 467-576 20-129 (142)
151 2dba_A Smooth muscle cell asso 98.4 2.5E-06 8.5E-11 73.3 11.9 95 501-595 28-127 (148)
152 4f3v_A ESX-1 secretion system 98.4 6.8E-07 2.3E-11 84.8 8.7 138 433-575 105-249 (282)
153 1na0_A Designed protein CTPR3; 98.4 2.4E-06 8.3E-11 70.6 11.2 97 501-597 9-107 (125)
154 3sz7_A HSC70 cochaperone (SGT) 98.4 2.3E-06 7.9E-11 75.3 11.4 94 430-527 11-105 (164)
155 3rkv_A Putative peptidylprolyl 98.4 2.1E-06 7.2E-11 75.4 10.9 64 533-596 63-126 (162)
156 3gw4_A Uncharacterized protein 98.4 3E-06 1E-10 77.4 12.4 154 410-563 3-177 (203)
157 3upv_A Heat shock protein STI1 98.4 1.9E-06 6.6E-11 71.9 10.1 109 467-577 6-122 (126)
158 2dba_A Smooth muscle cell asso 98.4 5.8E-06 2E-10 70.9 13.3 111 466-579 29-145 (148)
159 1a17_A Serine/threonine protei 98.3 7E-06 2.4E-10 72.0 13.8 128 431-561 14-145 (166)
160 2hr2_A Hypothetical protein; a 98.3 1.5E-06 5.1E-11 74.4 8.9 91 506-596 16-131 (159)
161 1wao_1 Serine/threonine protei 98.3 2.1E-06 7.1E-11 90.1 11.8 114 440-557 16-134 (477)
162 2xev_A YBGF; tetratricopeptide 98.3 2.9E-06 1E-10 71.0 9.8 92 505-596 6-105 (129)
163 2vyi_A SGTA protein; chaperone 98.3 4.1E-06 1.4E-10 69.9 10.5 98 500-597 11-110 (131)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.3E-06 1.5E-10 87.3 12.3 145 429-595 267-414 (457)
165 3q7a_A Farnesyltransferase alp 98.3 4.5E-05 1.6E-09 74.8 18.5 179 414-595 104-330 (349)
166 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.4E-11 79.8 7.1 119 476-596 15-151 (198)
167 1wao_1 Serine/threonine protei 98.2 2E-06 6.7E-11 90.2 9.1 118 472-591 13-134 (477)
168 3q49_B STIP1 homology and U bo 98.2 6.7E-06 2.3E-10 69.6 10.7 100 464-565 8-109 (137)
169 3k9i_A BH0479 protein; putativ 98.2 1.2E-06 4E-11 72.2 5.4 83 514-596 3-90 (117)
170 2hr2_A Hypothetical protein; a 98.2 3.1E-06 1.1E-10 72.4 7.6 72 503-574 59-143 (159)
171 2c2l_A CHIP, carboxy terminus 98.2 7.1E-06 2.4E-10 79.5 11.1 110 464-575 3-114 (281)
172 4gcn_A Protein STI-1; structur 98.2 7.3E-06 2.5E-10 68.5 9.5 92 471-565 14-115 (127)
173 3q7a_A Farnesyltransferase alp 98.2 0.00055 1.9E-08 67.1 24.1 229 340-574 65-344 (349)
174 1p5q_A FKBP52, FK506-binding p 98.2 1.1E-05 3.9E-10 80.3 12.4 144 414-561 128-293 (336)
175 1hxi_A PEX5, peroxisome target 98.2 5.8E-06 2E-10 68.4 8.6 98 468-567 20-119 (121)
176 1elr_A TPR2A-domain of HOP; HO 98.2 5.1E-06 1.7E-10 69.4 8.3 108 468-578 7-123 (131)
177 2if4_A ATFKBP42; FKBP-like, al 98.2 4.7E-06 1.6E-10 83.1 9.4 148 430-597 179-329 (338)
178 1elr_A TPR2A-domain of HOP; HO 98.2 6.6E-06 2.2E-10 68.7 9.0 96 501-596 4-108 (131)
179 4b4t_Q 26S proteasome regulato 98.2 1.5E-05 5.2E-10 82.5 13.7 188 407-594 12-243 (434)
180 2kck_A TPR repeat; tetratricop 98.2 8.4E-06 2.9E-10 65.8 9.2 99 467-567 8-111 (112)
181 2xev_A YBGF; tetratricopeptide 98.1 2.1E-05 7.4E-10 65.5 11.6 103 471-576 8-119 (129)
182 3ro3_A PINS homolog, G-protein 98.1 8E-06 2.7E-10 71.0 8.9 93 503-595 51-157 (164)
183 1dce_A Protein (RAB geranylger 98.1 7.9E-05 2.7E-09 79.5 18.2 170 412-585 42-244 (567)
184 1ihg_A Cyclophilin 40; ppiase 98.1 1.3E-05 4.4E-10 80.9 11.4 138 430-589 223-363 (370)
185 3dss_A Geranylgeranyl transfer 98.1 0.00036 1.2E-08 68.1 20.8 169 401-573 110-315 (331)
186 3dss_A Geranylgeranyl transfer 98.1 0.00029 1E-08 68.7 20.1 180 415-597 90-305 (331)
187 3rkv_A Putative peptidylprolyl 98.1 6.8E-06 2.3E-10 72.1 7.4 77 501-577 63-142 (162)
188 3n71_A Histone lysine methyltr 98.0 2.3E-05 7.9E-10 81.5 12.0 124 475-598 319-466 (490)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5.1E-10 79.5 9.9 150 399-567 179-333 (338)
190 3k9i_A BH0479 protein; putativ 98.0 3.7E-06 1.3E-10 69.1 4.2 93 478-571 3-99 (117)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.8E-05 9.5E-10 81.1 11.7 65 533-597 317-381 (457)
192 3ro3_A PINS homolog, G-protein 98.0 3.3E-05 1.1E-09 67.1 10.2 133 432-564 11-160 (164)
193 2l6j_A TPR repeat-containing p 98.0 2.5E-06 8.5E-11 69.2 2.7 92 500-591 3-102 (111)
194 1ihg_A Cyclophilin 40; ppiase 98.0 3.5E-05 1.2E-09 77.7 11.1 112 466-596 224-336 (370)
195 2kat_A Uncharacterized protein 97.9 2.7E-05 9.2E-10 63.5 7.9 78 519-596 3-82 (115)
196 3ma5_A Tetratricopeptide repea 97.9 4.3E-05 1.5E-09 60.6 8.7 65 532-596 6-70 (100)
197 4b4t_Q 26S proteasome regulato 97.9 0.00011 3.8E-09 75.9 14.3 159 437-595 11-203 (434)
198 1zu2_A Mitochondrial import re 97.9 6.1E-06 2.1E-10 70.4 3.3 86 513-598 14-122 (158)
199 1na3_A Designed protein CTPR2; 97.9 4.9E-05 1.7E-09 58.6 8.3 81 501-581 9-91 (91)
200 3bee_A Putative YFRE protein; 97.7 0.00012 4.3E-09 56.7 8.6 69 531-599 4-75 (93)
201 3n71_A Histone lysine methyltr 97.7 7.5E-05 2.6E-09 77.7 8.4 113 510-640 318-448 (490)
202 3qwp_A SET and MYND domain-con 97.6 0.0001 3.5E-09 75.6 8.2 113 511-641 297-427 (429)
203 1zu2_A Mitochondrial import re 97.6 5.9E-05 2E-09 64.3 4.8 86 480-567 17-125 (158)
204 2l6j_A TPR repeat-containing p 97.6 0.00022 7.6E-09 57.2 8.2 67 531-597 2-68 (111)
205 1dce_A Protein (RAB geranylger 97.5 0.00096 3.3E-08 71.1 14.5 150 444-597 43-222 (567)
206 2kat_A Uncharacterized protein 97.4 0.00033 1.1E-08 56.9 7.4 81 483-565 3-85 (115)
207 1klx_A Cysteine rich protein B 97.4 0.0016 5.6E-08 54.8 11.5 50 546-597 74-127 (138)
208 3qww_A SET and MYND domain-con 97.4 0.00015 5.2E-09 74.1 5.6 84 533-634 340-431 (433)
209 1na3_A Designed protein CTPR2; 97.3 0.00061 2.1E-08 52.2 7.8 64 533-596 9-72 (91)
210 1klx_A Cysteine rich protein B 97.3 0.0015 5.2E-08 55.0 10.1 113 443-564 8-128 (138)
211 3ly7_A Transcriptional activat 97.2 0.0064 2.2E-07 59.5 14.4 142 428-597 192-340 (372)
212 3qww_A SET and MYND domain-con 97.1 0.0027 9.2E-08 64.8 11.0 93 478-570 311-424 (433)
213 2kc7_A BFR218_protein; tetratr 97.0 0.0014 4.7E-08 51.3 6.8 64 507-570 6-72 (99)
214 2kc7_A BFR218_protein; tetratr 97.0 0.0031 1.1E-07 49.2 8.7 86 472-567 7-95 (99)
215 3ma5_A Tetratricopeptide repea 97.0 0.0034 1.2E-07 49.3 8.6 63 429-493 6-69 (100)
216 3qwp_A SET and MYND domain-con 97.0 0.0054 1.8E-07 62.7 12.2 97 475-571 297-414 (429)
217 3ly7_A Transcriptional activat 96.9 0.0064 2.2E-07 59.5 11.9 39 559-597 269-307 (372)
218 1wy6_A Hypothetical protein ST 96.8 0.14 4.9E-06 41.3 17.0 141 440-599 17-157 (172)
219 3u64_A Protein TP_0956; tetrat 96.7 0.005 1.7E-07 57.7 8.4 87 517-603 179-276 (301)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.075 2.6E-06 59.5 19.6 102 408-527 661-762 (814)
221 3lvg_A Clathrin heavy chain 1; 96.5 0.0015 5.2E-08 65.2 3.6 238 196-451 53-325 (624)
222 2v5f_A Prolyl 4-hydroxylase su 96.3 0.021 7.2E-07 45.0 9.1 73 502-574 6-87 (104)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.18 6.1E-06 56.5 20.2 129 267-424 633-761 (814)
224 3lvg_A Clathrin heavy chain 1; 96.3 0.0097 3.3E-07 59.5 8.1 397 97-525 53-536 (624)
225 1pc2_A Mitochondria fission pr 96.2 0.02 7E-07 48.1 8.5 89 479-569 12-107 (152)
226 3bee_A Putative YFRE protein; 96.1 0.032 1.1E-06 42.8 8.8 69 498-566 3-76 (93)
227 1pc2_A Mitochondria fission pr 96.1 0.023 7.7E-07 47.8 8.3 87 445-534 13-105 (152)
228 3mkq_B Coatomer subunit alpha; 95.4 0.34 1.2E-05 41.7 13.3 129 407-559 13-141 (177)
229 3mkq_B Coatomer subunit alpha; 95.4 0.64 2.2E-05 40.0 14.8 130 204-355 12-141 (177)
230 1qsa_A Protein (soluble lytic 95.3 3.8 0.00013 43.6 26.6 249 302-561 76-347 (618)
231 3u64_A Protein TP_0956; tetrat 94.9 0.04 1.4E-06 51.7 6.4 81 482-565 180-272 (301)
232 4h7y_A Dual specificity protei 94.6 0.097 3.3E-06 43.3 7.1 53 546-598 73-125 (161)
233 4gns_B Protein CSD3, chitin bi 93.9 0.26 8.8E-06 53.4 10.7 55 540-594 344-398 (754)
234 1nzn_A CGI-135 protein, fissio 93.8 0.41 1.4E-05 38.6 9.2 74 499-572 33-113 (126)
235 2v5f_A Prolyl 4-hydroxylase su 93.2 0.29 9.9E-06 38.3 7.6 64 533-596 5-75 (104)
236 1wy6_A Hypothetical protein ST 93.1 3 0.0001 33.8 13.5 118 172-294 17-156 (172)
237 4h7y_A Dual specificity protei 93.0 0.4 1.4E-05 39.7 8.0 54 514-567 73-128 (161)
238 1nzn_A CGI-135 protein, fissio 92.7 0.45 1.5E-05 38.3 7.8 80 517-596 17-103 (126)
239 4b4t_P 26S proteasome regulato 92.5 6.9 0.00024 39.8 18.5 158 269-428 143-324 (445)
240 2wpv_A GET4, UPF0363 protein Y 92.0 8.6 0.00029 36.6 20.3 167 301-493 36-216 (312)
241 2wpv_A GET4, UPF0363 protein Y 91.6 9.5 0.00033 36.3 17.5 132 199-341 35-177 (312)
242 1y8m_A FIS1; mitochondria, unk 90.9 4 0.00014 33.5 11.6 71 498-568 36-112 (144)
243 3o48_A Mitochondria fission 1 90.1 2 6.9E-05 34.7 9.1 68 499-566 38-111 (134)
244 4ady_A RPN2, 26S proteasome re 90.0 27 0.00092 38.8 30.2 215 307-527 383-620 (963)
245 2qx5_A Nucleoporin NIC96; mRNA 90.0 15 0.00051 39.2 18.3 82 334-426 299-383 (661)
246 2qx5_A Nucleoporin NIC96; mRNA 89.4 12 0.00042 39.8 17.2 82 233-325 299-383 (661)
247 3lpz_A GET4 (YOR164C homolog); 89.3 16 0.00054 35.1 22.0 167 301-493 38-215 (336)
248 4ady_A RPN2, 26S proteasome re 89.0 32 0.0011 38.2 32.4 303 206-516 383-721 (963)
249 3txn_A 26S proteasome regulato 88.2 12 0.00042 37.0 15.3 124 403-527 23-165 (394)
250 2p58_C Putative type III secre 87.8 7.4 0.00025 29.4 9.9 89 174-267 19-107 (116)
251 3ffl_A Anaphase-promoting comp 87.4 2.8 9.7E-05 35.4 8.5 26 568-593 123-148 (167)
252 2uwj_G Type III export protein 87.3 7.1 0.00024 29.5 9.5 89 174-267 18-106 (115)
253 3ffl_A Anaphase-promoting comp 86.4 3.8 0.00013 34.6 8.8 25 468-492 66-90 (167)
254 1y8m_A FIS1; mitochondria, unk 86.2 13 0.00044 30.5 11.6 69 463-532 37-109 (144)
255 2ff4_A Probable regulatory pro 86.0 1.8 6E-05 43.3 8.0 60 536-595 174-233 (388)
256 2p58_C Putative type III secre 85.8 9.8 0.00033 28.8 9.7 86 380-470 23-108 (116)
257 2uwj_G Type III export protein 85.7 9.3 0.00032 28.9 9.4 86 380-470 22-107 (115)
258 4gns_B Protein CSD3, chitin bi 85.4 22 0.00075 38.6 16.4 54 271-325 345-398 (754)
259 3lpz_A GET4 (YOR164C homolog); 85.2 27 0.00093 33.5 19.6 112 200-322 38-160 (336)
260 1v54_E Cytochrome C oxidase po 85.0 3.7 0.00013 31.2 7.1 63 445-509 25-87 (109)
261 3o48_A Mitochondria fission 1 84.9 11 0.00036 30.6 10.3 75 462-537 37-115 (134)
262 1v54_E Cytochrome C oxidase po 84.8 4.8 0.00017 30.6 7.6 55 519-573 31-85 (109)
263 3txn_A 26S proteasome regulato 83.4 28 0.00094 34.5 15.0 160 432-593 21-207 (394)
264 1zbp_A Hypothetical protein VP 82.4 12 0.0004 34.6 10.9 49 442-492 9-58 (273)
265 4b4t_P 26S proteasome regulato 81.6 47 0.0016 33.5 20.0 96 432-527 139-244 (445)
266 2ff4_A Probable regulatory pro 81.4 9.3 0.00032 38.0 11.0 68 435-503 176-247 (388)
267 1zbp_A Hypothetical protein VP 79.6 5.9 0.0002 36.5 7.9 112 473-596 5-129 (273)
268 4fhn_B Nucleoporin NUP120; pro 79.5 33 0.0011 39.7 16.3 160 301-482 815-988 (1139)
269 4fhn_B Nucleoporin NUP120; pro 79.1 16 0.00056 42.2 13.5 82 503-585 901-989 (1139)
270 2y69_E Cytochrome C oxidase su 77.9 8.1 0.00028 31.2 7.1 62 446-509 69-130 (152)
271 3esl_A Checkpoint serine/threo 77.8 19 0.00064 31.6 10.1 64 535-599 82-147 (202)
272 2y69_E Cytochrome C oxidase su 74.8 14 0.00047 29.9 7.6 56 518-573 73-128 (152)
273 1wdy_A 2-5A-dependent ribonucl 73.2 31 0.0011 31.7 11.8 47 276-322 192-240 (285)
274 3mv2_A Coatomer subunit alpha; 72.3 52 0.0018 31.2 12.3 60 524-597 196-257 (325)
275 3ltj_A Alpharep-4; protein eng 71.7 49 0.0017 28.6 17.5 17 262-278 151-167 (201)
276 4b4t_R RPN7, 26S proteasome re 70.3 22 0.00075 35.8 10.4 92 502-593 132-234 (429)
277 4a1g_A Mitotic checkpoint seri 66.9 37 0.0013 28.2 9.0 79 518-599 52-133 (152)
278 1wdy_A 2-5A-dependent ribonucl 66.5 30 0.001 31.9 10.1 206 69-286 8-239 (285)
279 2wvi_A Mitotic checkpoint seri 62.1 48 0.0017 27.9 9.1 48 552-599 79-128 (164)
280 4b4t_R RPN7, 26S proteasome re 60.7 59 0.002 32.6 11.3 93 401-493 133-236 (429)
281 3eiq_C Programmed cell death p 60.0 39 0.0013 32.8 9.3 63 403-465 221-288 (358)
282 1k1a_A B-cell lymphoma 3-encod 58.6 45 0.0015 29.7 9.4 53 170-222 14-68 (241)
283 3ltj_A Alpharep-4; protein eng 57.5 93 0.0032 26.8 18.2 79 426-513 117-195 (201)
284 3ltm_A Alpha-REP4; protein eng 57.5 96 0.0033 26.9 17.7 152 196-356 32-183 (211)
285 3kea_A K1L; tropism, ANK repea 56.0 57 0.0019 30.3 9.8 15 109-123 39-53 (285)
286 1k1a_A B-cell lymphoma 3-encod 51.9 67 0.0023 28.5 9.4 54 71-124 14-69 (241)
287 3ltm_A Alpha-REP4; protein eng 51.6 1.2E+02 0.0041 26.3 18.0 17 428-444 124-140 (211)
288 3hra_A Ankyrin repeat family p 50.5 63 0.0022 27.7 8.7 17 108-124 12-28 (201)
289 3eu9_A Huntingtin-interacting 48.8 46 0.0016 29.5 7.7 21 104-124 45-65 (240)
290 2nsz_A Programmed cell death p 48.6 82 0.0028 25.2 8.1 63 200-262 10-77 (129)
291 3kea_A K1L; tropism, ANK repea 45.3 1.8E+02 0.0061 26.7 11.5 72 147-222 44-117 (285)
292 2nsz_A Programmed cell death p 44.5 1.2E+02 0.0041 24.2 8.6 65 301-365 10-79 (129)
293 1oyz_A Hypothetical protein YI 44.1 1.9E+02 0.0064 26.4 21.9 18 499-516 204-221 (280)
294 3esl_A Checkpoint serine/threo 41.4 1.8E+02 0.0061 25.4 10.5 82 416-499 61-148 (202)
295 2rfa_A Transient receptor pote 41.0 1.2E+02 0.0042 26.6 9.3 20 274-293 162-181 (232)
296 2d2s_A Exocyst complex compone 40.8 97 0.0033 27.9 8.2 21 235-255 25-45 (235)
297 3i5p_A Nucleoporin NUP170; hel 40.6 1.7E+02 0.0059 30.0 10.8 170 415-597 51-247 (525)
298 3eiq_C Programmed cell death p 39.5 2.7E+02 0.0092 26.9 13.7 61 302-362 221-286 (358)
299 2ion_A PDCD4, programmed cell 39.3 78 0.0027 26.2 6.8 63 200-262 12-79 (152)
300 3aji_A 26S proteasome non-ATPa 38.0 1.3E+02 0.0044 26.4 8.9 16 108-123 13-28 (231)
301 4g8k_A 2-5A-dependent ribonucl 35.9 1.8E+02 0.0061 27.5 10.1 288 67-366 26-331 (337)
302 2d2s_A Exocyst complex compone 35.0 86 0.0029 28.3 6.8 87 437-527 25-117 (235)
303 3utm_A Tankyrase-1; tankyrase, 34.7 2.9E+02 0.0098 25.9 11.5 55 104-161 61-118 (351)
304 3mkr_B Coatomer subunit alpha; 34.3 1.5E+02 0.0051 28.1 8.4 60 524-597 187-248 (320)
305 1n11_A Ankyrin; clathrin, BAND 33.9 2.5E+02 0.0086 27.6 11.2 46 510-557 317-365 (437)
306 2ion_A PDCD4, programmed cell 33.8 97 0.0033 25.7 6.5 64 301-364 12-80 (152)
307 2r9g_A AAA ATPase, central reg 33.6 2.1E+02 0.007 24.9 8.4 63 332-395 14-84 (204)
308 3b7b_A Euchromatic histone-lys 33.4 54 0.0018 29.1 5.5 140 72-222 17-166 (237)
309 3jxi_A Vanilloid receptor-rela 33.0 83 0.0028 28.4 6.8 18 206-223 99-116 (260)
310 2zu6_B Programmed cell death p 33.0 1.4E+02 0.0048 28.2 8.3 68 332-400 169-238 (307)
311 4gq2_M Nucleoporin NUP120; bet 32.9 1.7E+02 0.0057 33.0 10.3 32 535-566 899-931 (950)
312 4aez_C MAD3, mitotic spindle c 32.0 1.6E+02 0.0056 26.1 7.9 49 551-599 132-182 (223)
313 1bd8_A P19INK4D CDK4/6 inhibit 28.7 83 0.0028 25.5 5.5 17 206-222 107-123 (156)
314 4b4t_S RPN3, 26S proteasome re 28.7 1.7E+02 0.0057 30.0 8.3 117 466-590 232-364 (523)
315 3aji_A 26S proteasome non-ATPa 28.6 2E+02 0.0069 25.0 8.5 88 70-161 10-100 (231)
316 1n11_A Ankyrin; clathrin, BAND 28.2 2.6E+02 0.009 27.5 10.2 114 202-323 16-135 (437)
317 2pm7_A Protein WEB1, protein t 27.6 4.5E+02 0.015 25.8 11.7 25 569-593 338-362 (399)
318 3d9h_A CDNA FLJ77766, highly s 27.5 1.3E+02 0.0045 27.7 7.2 20 101-120 15-34 (285)
319 3ljn_A Hypothetical protein; a 27.5 1.1E+02 0.0037 29.5 6.9 16 308-323 180-195 (364)
320 3b7b_A Euchromatic histone-lys 27.5 1.4E+02 0.0049 26.1 7.3 20 372-391 215-234 (237)
321 3qye_A TBC1 domain family memb 27.3 3.5E+02 0.012 25.6 10.4 44 149-192 210-253 (331)
322 3hra_A Ankyrin repeat family p 27.1 2.7E+02 0.0093 23.4 8.9 17 207-223 12-28 (201)
323 4b4t_S RPN3, 26S proteasome re 26.8 1.2E+02 0.004 31.1 6.8 67 501-567 231-304 (523)
324 3eu9_A Huntingtin-interacting 26.1 2.6E+02 0.009 24.2 8.9 177 407-596 47-236 (240)
325 2p1h_A APAF-1, apoptotic prote 26.0 2E+02 0.0068 21.2 6.8 61 181-245 24-84 (94)
326 2r9g_A AAA ATPase, central reg 26.0 3.3E+02 0.011 23.7 9.5 44 436-480 17-63 (204)
327 3jxi_A Vanilloid receptor-rela 25.4 1.1E+02 0.0038 27.5 6.2 89 236-325 10-117 (260)
328 2fe3_A Peroxide operon regulat 25.2 1.4E+02 0.0049 24.3 6.1 33 446-478 37-69 (145)
329 3ygs_P Procaspase 9; apoptosis 24.8 92 0.0031 23.4 4.4 39 312-350 51-89 (97)
330 3bge_A Predicted ATPase; struc 24.7 2.6E+02 0.0088 24.3 7.5 46 334-379 9-57 (201)
331 3qye_A TBC1 domain family memb 24.5 4.5E+02 0.015 24.8 10.9 88 350-437 209-301 (331)
332 1ya0_A SMG-7 transcript varian 24.0 1.9E+02 0.0065 29.5 7.9 48 541-588 160-207 (497)
333 2f8y_A Notch homolog 1, transl 23.6 2.1E+02 0.0073 24.6 7.7 50 70-123 29-80 (223)
334 2fe3_A Peroxide operon regulat 23.6 2.2E+02 0.0074 23.1 6.9 13 281-293 39-51 (145)
335 3ctd_A Putative ATPase, AAA fa 23.0 3.1E+02 0.011 24.0 7.7 65 331-395 34-106 (213)
336 2xig_A Ferric uptake regulatio 22.9 2E+02 0.0068 23.6 6.6 46 435-480 31-76 (150)
337 3bge_A Predicted ATPase; struc 22.8 3.4E+02 0.012 23.5 7.9 45 436-480 10-57 (201)
338 3ygs_P Procaspase 9; apoptosis 22.6 96 0.0033 23.3 4.1 38 211-248 51-88 (97)
339 1oyz_A Hypothetical protein YI 22.5 4.3E+02 0.015 23.8 21.6 17 296-312 140-156 (280)
340 3kae_A CDC27, possible protein 22.0 3.6E+02 0.012 22.8 9.1 83 507-592 39-139 (242)
341 4a1g_A Mitotic checkpoint seri 21.7 3.4E+02 0.012 22.4 9.6 52 447-499 82-134 (152)
342 3bqo_A Telomeric repeat-bindin 21.7 4E+02 0.014 23.1 12.2 62 517-578 94-162 (211)
343 1ug3_A EIF4GI, eukaryotic prot 21.5 3.1E+02 0.011 26.1 8.7 140 201-354 15-166 (339)
344 2pnn_A Transient receptor pote 20.2 2.6E+02 0.0087 25.3 7.6 17 308-324 108-124 (273)
345 3syn_E ATP-binding protein YLX 20.1 63 0.0022 16.1 1.6 17 580-596 3-19 (23)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-43 Score=383.17 Aligned_cols=479 Identities=9% Similarity=-0.073 Sum_probs=396.3
Q ss_pred hhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHH
Q 044628 108 YVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLH 185 (665)
Q Consensus 108 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 185 (665)
+.++|.+..++..|+.++.+++..|+.++..|.+.|+.. +.+|++|.. ..||..++..+..+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 345666677777788877778888888888888888777 778888874 5678899999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCC-------------------CchhHHHHHHHHHhcCCchH
Q 044628 186 SFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCR-------------------DLVLWNVMVSCYALNCLGDG 246 (665)
Q Consensus 186 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 246 (665)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988653 678999999999999999999999999965443 37899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCcHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044628 247 AIAVFNLMRLEGMKGD-YFTFSSLVNSCGTLGSSKL--GRQI-HGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 247 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (665)
|+++|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+......+++.++.+|.++|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 44 3444444443333222211 1111 4444444445556678888999999999999999999
Q ss_pred ccCC--CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchh
Q 044628 323 GMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLS 400 (665)
Q Consensus 323 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 400 (665)
++.+ ++..+|+.++.+|.+.|++++|+.+|++|.+.+ +.+..++..++.++.+.|+.++|..++..+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 789999999999999999999999999998765 3366788999999999999999999999998654 56788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH 477 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 477 (665)
+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 3578899999999999999999999999999863 4477899999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCC
Q 044628 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-------PIEPR--SDTLGAFIGACKVHGS 548 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 548 (665)
.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999873 3457889999999999999999999999998 45787 7799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 549 IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+++|++.++++++++|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-40 Score=364.74 Aligned_cols=492 Identities=9% Similarity=0.009 Sum_probs=366.6
Q ss_pred CChHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHccc--CCCCcccHHHHHHH
Q 044628 61 SAHSFYSQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEM--RVRNIVTWNTLISG 138 (665)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~ 138 (665)
++...|..++..+.+.|+++.|..++..+.+.. |+..++..++.+|.+.|++++|..+|+.+ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 455566666677777777777777776666433 55566666777777777777777776666 24455555555555
Q ss_pred HHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHH
Q 044628 139 IINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDA 216 (665)
Q Consensus 139 ~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 216 (665)
|.+.|+.+ +++|+++. |+.. ...++...++ ...|...+..+++.++.+|.+.|++++|
T Consensus 160 ~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 55555544 44444211 1110 0000000000 0113344677888888888888888888
Q ss_pred HHHHhccCCC---CchhHHHHHHHHHhcCCchHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 044628 217 RRVFDEVLCR---DLVLWNVMVSCYALNCLGDGAIA--V-FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVI 290 (665)
Q Consensus 217 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 290 (665)
.++|+++... +...|..+...+...+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++++.+.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 8888887433 33445555544433332222211 1 4555554545556667777788888888888888888877
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHH
Q 044628 291 KQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTL 367 (665)
Q Consensus 291 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 367 (665)
+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+.+|+++.... ..+..++
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 65 57888888888888888999888888888753 467788888888889999999999998887543 4467788
Q ss_pred HHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcC
Q 044628 368 ASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHG 444 (665)
Q Consensus 368 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 444 (665)
..+...|.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 888888888899999999888887754 3457789999999999999999999999875 358899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCC--hhhHHHHHHHHHhcCChHH
Q 044628 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDY---HILPD--SEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~ 519 (665)
++++|.++|+++.+.. ..+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999863 4467899999999999999999999999998732 55787 7899999999999999999
Q ss_pred HHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 520 AYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 520 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
|++.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++.++..++++|..
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999998 4445 688999999999999999999999999999999999999999998753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.2e-26 Score=235.96 Aligned_cols=370 Identities=15% Similarity=0.138 Sum_probs=298.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC---CCCchhHHHHHHHHHhcCCch
Q 044628 169 LRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL---CRDLVLWNVMVSCYALNCLGD 245 (665)
Q Consensus 169 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 245 (665)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667889999999998888864 3355667777788888999999998887663 346678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 044628 246 GAIAVFNLMRLEGMKGD-YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGM 324 (665)
Q Consensus 246 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 324 (665)
+|++.|+++... .|+ ..+|..+..++...|++++|.+.+..+++.. +.+...+..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999988774 354 4568888888888888888888888888775 445566777778888888888888888777
Q ss_pred CC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhH
Q 044628 325 TA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSI 401 (665)
Q Consensus 325 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 401 (665)
.+ .+..+|+.+...|.+.|++++|+..|+++...+ |+ +...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----------------------------------~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN----------------------------------FLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------------------------------cHHH
Confidence 53 345677888888888888888888888776632 32 2233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSH 477 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 477 (665)
+..+...+...|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+. .| +..++..+..++.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Confidence 4556667777788888887777654 346778899999999999999999999999985 45 45688889999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 044628 478 GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWA 555 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 555 (665)
.|++++|++.|+.+.+. .+.+...+..+..++.+.|++++|++.++++ ...|+ ..+|..+...+...|++++|+..
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999873 4567889999999999999999999999998 55564 77899999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 556 AEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 556 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
++++++++|+++.+|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1e-28 Score=260.13 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=174.7
Q ss_pred hHHHHHhhhCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC
Q 044628 147 TPYFRRMLLDNVRLDH-ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC 225 (665)
Q Consensus 147 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (665)
..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 4566777777766554 458889999999999999999999999999999999999999999988765432
Q ss_pred CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044628 226 RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLV 305 (665)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 305 (665)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+||
T Consensus 81 -------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI 147 (501)
T 4g26_A 81 -------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147 (501)
T ss_dssp -------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred -------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHH
Confidence 2234568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCC
Q 044628 306 DMYAKNGNIDDACRVFDGMT----AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377 (665)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 377 (665)
.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999996 4789999999999999999999999999999999999999999999887654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.5e-25 Score=228.97 Aligned_cols=352 Identities=16% Similarity=0.098 Sum_probs=285.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044628 235 VSCYALNCLGDGAIAVFNLMRLEGMKGD-YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGN 313 (665)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 313 (665)
...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777777654 344 3344455555667777888887777777664 5667778888888888888
Q ss_pred HHHHHHHHhccCC--C-CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHhCCCCchHhHHHHHHH
Q 044628 314 IDDACRVFDGMTA--K-NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE-VTLASILSSCGSLSISCETRQVHAY 389 (665)
Q Consensus 314 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~ 389 (665)
+++|.+.|+++.+ | +..+|..+..++.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887653 3 4456888888888888888888888888764 3443 3445556667778888888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 044628 390 AIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-S 465 (665)
Q Consensus 390 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 465 (665)
+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 87764 34567788899999999999999999998863 55678999999999999999999999999885 564 5
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CChhHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIE-PRSDTLGAFIGAC 543 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 543 (665)
.++..+..++...|++++|++.|+.+.+. .+.+...|..+..++.+.|++++|++.++++ ... ++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999999872 2335778999999999999999999999998 333 4678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999754
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.1e-27 Score=252.32 Aligned_cols=184 Identities=11% Similarity=0.088 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCc---------hHhHHHHHHHHHHhCCCCchh
Q 044628 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI---------SCETRQVHAYAIKNGVQAFLS 400 (665)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~ 400 (665)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999986554 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVK----EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999987 48999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV 514 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 514 (665)
+.|++++|.++|++|.+ .+..|+..+|+.+++.+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999987 69999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.7e-23 Score=221.35 Aligned_cols=426 Identities=8% Similarity=-0.081 Sum_probs=316.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC---CCCchhHHHHHHHHHh
Q 044628 164 TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL---CRDLVLWNVMVSCYAL 240 (665)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 240 (665)
.+...-..+...|++++|...+..+++.. |+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+..+|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 44555677888999999999999999976 689999999999999999999999998773 3356789999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCHHHH
Q 044628 241 NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSL---VDMYAKNGNIDDA 317 (665)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A 317 (665)
.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..++......- ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988752 34444444554444333333333333222221111111111000 0011111112222
Q ss_pred HHHHhccCC---------C-CchhHHHHHHHHHc---CCChHHHHHHHHHHhh-----CCCCC--------CHHHHHHHH
Q 044628 318 CRVFDGMTA---------K-NVVSWNTMVVGFGQ---NGDGREAVKLLRDMLQ-----GSFCP--------DEVTLASIL 371 (665)
Q Consensus 318 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll 371 (665)
...+..... + +...|......+.. .|++++|+..|+++.. ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222221 1 23445445555554 8999999999999877 31122 245666777
Q ss_pred HHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHH
Q 044628 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKE 448 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 448 (665)
..+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 7788899999999999999887654 78888899999999999999999988753 567889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-
Q 044628 449 SIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM- 527 (665)
Q Consensus 449 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 527 (665)
|+..|+++.+.. +.+..++..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999863 335678888999999999999999999999873 3346778899999999999999999999988
Q ss_pred ---CCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 528 ---PIEPR----SDTLGAFIGACKV---HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 528 ---~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+..++ ...|..+...+.. .|++++|...++++++.+|+++.++..++.+|.+.|++++|...+++..+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22232 3388889999999 9999999999999999999999999999999999999999999999988653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2e-22 Score=212.73 Aligned_cols=321 Identities=13% Similarity=0.064 Sum_probs=224.7
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308 (665)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 308 (665)
..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 345555555555555555555555554431 1234445555555555555555555555555543 33455556666666
Q ss_pred HhcCCHHHHHHHHhccCCCC---c---hhHHHHHH------------HHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 044628 309 AKNGNIDDACRVFDGMTAKN---V---VSWNTMVV------------GFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370 (665)
Q Consensus 309 ~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 370 (665)
.+.|++++|.+.|+++.+.+ . ..|..++. .+.+.|++++|+..|+++...
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------ 172 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV------------ 172 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 66666666666666654321 2 34444433 355566666666666665542
Q ss_pred HHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChH
Q 044628 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSK 447 (665)
Q Consensus 371 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 447 (665)
. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|+++
T Consensus 173 -----------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 173 -----------------------C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp -----------------------C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 1 2244556677788888888888888888775 357788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHH------------HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSI-AFLEV------------LSACSHGGLVSEGLRYFNLMISDYHILPD-----SEHYTCLTD 509 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~ 509 (665)
+|++.|+++.+. .|+.. .+..+ ..+|.+.|++++|+++|+.+.+ +.|+ ..+|..++.
T Consensus 229 ~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 229 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHH
Confidence 999999999875 56554 33333 7889999999999999999987 3455 458899999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------H
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS------------N 575 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~ 575 (665)
++.+.|++++|++.++++ ...| +..+|..+..+|...|++++|+..++++++++|+++.++..++ +
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999998 4455 5789999999999999999999999999999999999999999 4
Q ss_pred HHHhcC-----CHHHHHHHHHH
Q 044628 576 VYASER-----CWFDVARLRKM 592 (665)
Q Consensus 576 ~y~~~g-----~~~~A~~~~~~ 592 (665)
.|...| +.+++.+.+++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHH
Confidence 466666 45566666664
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=210.52 Aligned_cols=438 Identities=11% Similarity=-0.030 Sum_probs=304.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCchHHHHHhhhCCCCCCcchHHHHHHHHhcCCChH
Q 044628 100 LQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLDHITFNSLLRACVQADDIE 179 (665)
Q Consensus 100 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 179 (665)
.+..+...|.+.|++++|...|+++ .+.. ||..++..+..++...|+++
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~a-----------------------------l~~~--p~~~~~~~la~~~~~~g~~~ 56 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWA-----------------------------LELK--EDPVFYSNLSACYVSVGDLK 56 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH-----------------------------HHHC--CCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-----------------------------HhcC--ccHHHHHhHHHHHHHHhhHH
Confidence 4455566666777777777766654 3222 56777777888888889999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 044628 180 VGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRL 256 (665)
Q Consensus 180 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (665)
+|.+.++.+++.+ +.+..++..+..+|.+.|++++|...|+++.. .+......++..+........+.+.+..+..
T Consensus 57 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (514)
T 2gw1_A 57 KVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135 (514)
T ss_dssp HHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988875 34667888888999999999999999887732 2344444555544443333333333333222
Q ss_pred CCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHhcc
Q 044628 257 EGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF---------DLDVLVATSLVDMYAK---NGNIDDACRVFDGM 324 (665)
Q Consensus 257 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 324 (665)
.+..|+...+..-...............+...+..... +.+...+..+...+.. .|++++|...|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ---------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 22222221111111111111111111111111111110 1224444444444444 78888888888776
Q ss_pred CC-----------------CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHH
Q 044628 325 TA-----------------KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVH 387 (665)
Q Consensus 325 ~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 387 (665)
.+ .+..+|..+...+...|++++|+..|+++.... |+...+..+...+...|+++.|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44 134567788888999999999999999888754 44677777888888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044628 388 AYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD 464 (665)
Q Consensus 388 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 464 (665)
..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 8887754 3456678889999999999999999999865 3567889999999999999999999999999862 335
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-ChhH
Q 044628 465 SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGR---VGLLVEAYDLLASM-PIEP-RSDT 535 (665)
Q Consensus 465 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~ 535 (665)
..++..+...+...|++++|.+.++.+.+...-.++ ...+..+...+.+ .|++++|.+.++++ ...| +..+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 578888999999999999999999999773222222 3388999999999 99999999999998 4445 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
|..+...+...|++++|...++++++++|+++..+..+
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 88899999999999999999999999999987776655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.9e-21 Score=207.67 Aligned_cols=422 Identities=10% Similarity=-0.014 Sum_probs=285.4
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC---CCCchhHHHHHHHHH
Q 044628 163 ITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL---CRDLVLWNVMVSCYA 239 (665)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 239 (665)
..+..+-..+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 345556666777788888888888877764 3466777777788888888888888887763 235667777778888
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHH
Q 044628 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQS--FDLDVLVATSLVDMYAKNGNIDDA 317 (665)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A 317 (665)
..|++++|+..|+.+.. .|+... ..+..+...+....+...++.+++.. ..+........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 88888888888753322 222111 11222333334456666666664431 011111123344455666777777
Q ss_pred HHHHhccCCCCch---hHHHHHHHHHcC--------CChHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHhCCCC
Q 044628 318 CRVFDGMTAKNVV---SWNTMVVGFGQN--------GDGREAVKLLRDMLQGSFCPD--------EVTLASILSSCGSLS 378 (665)
Q Consensus 318 ~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~ 378 (665)
...+......+.. .+..+...+... |++++|+.+|+++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 7766666554433 333333333332 36778888888877643 33 123445555667778
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 044628 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEK 455 (665)
Q Consensus 379 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 455 (665)
+++.|...+..+.+... +...+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|++
T Consensus 258 ~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 88888888888877653 36677778888888888888888888765 35677888888888889999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 044628 456 MLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEP 531 (665)
Q Consensus 456 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 531 (665)
+.+.. +.+..++..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|++.++++ +..+
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 88853 224567888888888889999999999888873 3345678888888899999999999888886 1111
Q ss_pred C----hhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 532 R----SDTLGAFIGACKVH----------GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 532 ~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+ ...+..+...+... |++++|+..++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 22233444566666 899999999999999999988889999999999999999999998887653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=198.89 Aligned_cols=320 Identities=11% Similarity=0.037 Sum_probs=247.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 044628 247 AIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA 326 (665)
Q Consensus 247 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 326 (665)
+...+.+..... +.+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444443321 2345667777778888888888888888888764 55677888888888888888888888887753
Q ss_pred ---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCch
Q 044628 327 ---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE----VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399 (665)
Q Consensus 327 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 399 (665)
.+..+|..+...|.+.|++++|+..|+++... .|+. ..+..+...+. .
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~ 143 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------M 143 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------H
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------H
Confidence 35667888888888888888888888888764 3443 33333332211 0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
..+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 112344567889999999999999876 3578899999999999999999999999999863 446688999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHH------------HHHHHhcCChHHHHHHHHhC-CCCCC-----hhHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPD-SEHYTCL------------TDLLGRVGLLVEAYDLLASM-PIEPR-----SDTLG 537 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~ 537 (665)
..|++++|++.|+.+.+ +.|+ ...+..+ ...+.+.|++++|++.|+++ ...|+ ...|.
T Consensus 223 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299 (450)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99999999999999987 3454 4445444 78899999999999999998 44554 34678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 538 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+..
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999999999999999999999999999999999998654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=9.4e-20 Score=196.80 Aligned_cols=423 Identities=10% Similarity=0.026 Sum_probs=303.3
Q ss_pred HHHHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCh
Q 044628 136 ISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV 213 (665)
Q Consensus 136 i~~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 213 (665)
-..+.+.|+.. +..|++..+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+..+|...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 33334444433 44444443322 2345677778888889999999999999999875 44678899999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhccCCcHHHHHHHH
Q 044628 214 EDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLE------GMKGDYFTFSSLVNSCGTLGSSKLGRQIHG 287 (665)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 287 (665)
++|.+.|+.+ ..+....+..+..+...+...+|+..++++... ...|+.......+ ...+.+.+...+.
T Consensus 110 ~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHHHHHHTSC
T ss_pred HHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChHHHHHHHh
Confidence 9999999744 333333444456666777778899999998553 2334444433332 2333333322221
Q ss_pred HHHHhCCCC-chhHHHHHHHHHHhc--------CCHHHHHHHHhccCCCC----------chhHHHHHHHHHcCCChHHH
Q 044628 288 LVIKQSFDL-DVLVATSLVDMYAKN--------GNIDDACRVFDGMTAKN----------VVSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 288 ~~~~~g~~~-~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A 348 (665)
.... ..+ .......+...+... |++++|..+|+++.+.+ ..+|..+...+...|++++|
T Consensus 185 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1110 011 111333444333332 57899999999886532 22567777889999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--
Q 044628 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK-- 426 (665)
Q Consensus 349 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 426 (665)
+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999885 4667788888899999999999999999998876 3457788999999999999999999999876
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----h
Q 044628 427 -EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----S 501 (665)
Q Consensus 427 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 501 (665)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+...-.++ .
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3567899999999999999999999999999863 334568888999999999999999999998763211111 2
Q ss_pred hhHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 502 EHYTCLTDLLGRV----------GLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 502 ~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
..+..+..++.+. |++++|++.++++ ...| +..+|..+...+...|+.++|...+++++++.|++...
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2244556778888 9999999999998 4445 47788999999999999999999999999999997655
Q ss_pred HH
Q 044628 570 YA 571 (665)
Q Consensus 570 ~~ 571 (665)
..
T Consensus 499 ~~ 500 (537)
T 3fp2_A 499 LQ 500 (537)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.5e-18 Score=172.98 Aligned_cols=297 Identities=12% Similarity=0.037 Sum_probs=196.2
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHH
Q 044628 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGRE 347 (665)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 347 (665)
..+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence 33334444444444444444332 33344555555555555666666555555432 244556666667777777777
Q ss_pred HHHHHHHHhhCCCCC---CHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044628 348 AVKLLRDMLQGSFCP---DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424 (665)
Q Consensus 348 A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (665)
|+..|++.... .| +.......+.. ... ...+..+...+...|++++|.+.|++
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~------~~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLVK------ADE----------------MQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHHH------HHH----------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHHH------HHH----------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777776653 34 22211111100 000 01123345667778888888888877
Q ss_pred CC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-
Q 044628 425 VK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD- 500 (665)
Q Consensus 425 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 500 (665)
+. ..+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.|+.+.+. .|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~ 221 (359)
T 3ieg_A 146 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDH 221 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---Cccc
Confidence 65 3566778888888888888888888888888752 335567777888888888888888888888762 333
Q ss_pred hhhHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 501 SEHYT------------CLTDLLGRVGLLVEAYDLLASM-PIEPRS-----DTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 501 ~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
...+. .+...+.+.|++++|.+.++++ ...|+. ..+..+...+...|++++|...++++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33222 3366788999999999999887 334442 22445667888999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 563 ~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988754
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=9.8e-18 Score=170.50 Aligned_cols=310 Identities=13% Similarity=0.062 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308 (665)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 308 (665)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+...+..+..+|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345555556666666666666666665532 1234455555566666666666666666666553 34556666667777
Q ss_pred HhcCCHHHHHHHHhccCCCCc------hhHHHH------------HHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 044628 309 AKNGNIDDACRVFDGMTAKNV------VSWNTM------------VVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASI 370 (665)
Q Consensus 309 ~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 370 (665)
.+.|++++|...|++..+.+. ..|..+ ...+...|++++|+..|+++.... |
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-------- 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--V-------- 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C--------
Confidence 777777777777766644222 223222 456666677777777766665432 2
Q ss_pred HHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChH
Q 044628 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSK 447 (665)
Q Consensus 371 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 447 (665)
.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 152 --------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 152 --------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred --------------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 2334456677778888888888888887653 56778888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHH------------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh-----hhHHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDS-IAFL------------EVLSACSHGGLVSEGLRYFNLMISDYHILPDS-----EHYTCLTD 509 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~ 509 (665)
+|.+.|++..+. .|+. ..+. .+...+...|++++|.+.++.+.+. .|+. ..+..+..
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHH
Confidence 999999998875 4443 2222 2356688899999999999999873 3442 33556788
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
++.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++...+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999988 4455 57789999999999999999999999999999999888888887765443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.9e-17 Score=166.33 Aligned_cols=183 Identities=14% Similarity=0.047 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+.
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 334556666667777777777776654 2345667777788888888888888888887752 234567777888888
Q ss_pred cCCcHHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC
Q 044628 477 HGGLVSEGLRYFNLMISDYH-------ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHG 547 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 547 (665)
..|++++|.+.++.+.+... .+.....+..+..+|.+.|++++|++.++++ ...| +...|..+...+...|
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc
Confidence 88888888888888876321 1334678888999999999999999999887 3344 5678888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCCH
Q 044628 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYA-SERCW 583 (665)
Q Consensus 548 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~ 583 (665)
++++|...++++++++|+++..+..++.+|. ..|+.
T Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred cHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999884 55554
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.6e-15 Score=166.15 Aligned_cols=382 Identities=12% Similarity=0.038 Sum_probs=296.6
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHH
Q 044628 162 HITFNSLLRACVQADDIEVGRRLHSFILKVG--FGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYA 239 (665)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 239 (665)
+.-....++++...|.+.+|.++++.++-.+ +..+....+.|+.+..+. +..+..++.++...-+ ..-+...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHH
Confidence 3445677888889999999999999998442 123456777777777776 5566666666655333 455778888
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044628 240 LNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACR 319 (665)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 319 (665)
..|.+++|..+|++.. -.....+.++. ..+++++|.++.+.+ .+..+|..+..++.+.|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999852 12222233333 667888888888754 457789999999999999999999
Q ss_pred HHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCch
Q 044628 320 VFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFL 399 (665)
Q Consensus 320 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 399 (665)
.|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++.
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 99765 677888999999999999999999999877654 33333345888889998888644442 1 3345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 479 (665)
..+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56667999999999999999999996 48999999999999999999999977 35688999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHh--cCCHHHHHHH
Q 044628 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKV--HGSIGLAKWA 555 (665)
Q Consensus 480 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~ 555 (665)
++..|..+...+ ..+.+.+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+ .++..++.+.
T Consensus 1265 Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999998876643 346777889999999999999999999887 66654 4456555555544 4577788888
Q ss_pred HHHHHhcCC-----CCCchHHHHHHHHHhcCCHHHHHHH
Q 044628 556 AEKLLELEP-----SKPVNYALVSNVYASERCWFDVARL 589 (665)
Q Consensus 556 ~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~~ 589 (665)
|..-+.+.| .++..|.-++-+|.+.|+|+.|...
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888777776 6778899999999999999999853
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.7e-18 Score=169.33 Aligned_cols=318 Identities=15% Similarity=0.079 Sum_probs=150.2
Q ss_pred hCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHH
Q 044628 209 KCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGL 288 (665)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 288 (665)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996654 8999999999999999999999653 5777999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHH
Q 044628 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA 368 (665)
Q Consensus 289 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 368 (665)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999987 2688
Q ss_pred HHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 044628 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKE 448 (665)
Q Consensus 369 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 448 (665)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8999999999999999999887 378899999999999999999988877765 444445578899999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHH--HHHHhcCCcHHHHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCChHH
Q 044628 449 SIEVFEKMLSHAVRPDS-IAFLEV--LSACSHGGLVSEGLRYFNLMISDYHILP------DSEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 449 A~~~~~~m~~~g~~p~~-~t~~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~ 519 (665)
|+.+++..... .+-. ..|+.+ +.+-.+-+++.+.++.|..- -+++| +...|.-++-+|...|+++.
T Consensus 226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999998864 3433 344444 44444556666666666533 34555 57889999999999999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 520 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
|...+-+-+ |+.---..+.....+-.+.|.--++..--++-
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 988766652 22222222333334444444444443333333
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=5.5e-16 Score=165.02 Aligned_cols=366 Identities=11% Similarity=-0.042 Sum_probs=254.2
Q ss_pred chHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCchhHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHhhH
Q 044628 196 NCFVSSALVDLYGK----CGFVEDARRVFDEVLC-RDLVLWNVMVSCYAL----NCLGDGAIAVFNLMRLEGMKGDYFTF 266 (665)
Q Consensus 196 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 266 (665)
++..+..|-..|.. .+++++|...|+...+ .+...+..|...|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45555555555555 5666666666665432 244556666666666 666666666666666544 34444
Q ss_pred HHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CCchhHHHHHH
Q 044628 267 SSLVNSCGT----LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK----NGNIDDACRVFDGMTA-KNVVSWNTMVV 337 (665)
Q Consensus 267 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 337 (665)
..+-..+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555554 566677777777666654 45556666666665 5677777777766543 35556666666
Q ss_pred HHHc----CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC----CCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 338 GFGQ----NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCG----SLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409 (665)
Q Consensus 338 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 409 (665)
.|.. .++.++|+..|++..+.| +...+..+-..+. ..++.++|...+....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6666 677777777777776654 3334444444443 2567777777777776654 334555666777
Q ss_pred Hh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044628 410 SK----CGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFH-----GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479 (665)
Q Consensus 410 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 479 (665)
.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 8899999999988764 5677788888888877 89999999999999865 4456666666666656
Q ss_pred ---cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCC
Q 044628 480 ---LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR----VGLLVEAYDLLASMPIEPRSDTLGAFIGACKV----HGS 548 (665)
Q Consensus 480 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~ 548 (665)
+.++|+++|+...+. .+...+..|..+|.. .+++++|++.|++.--..+...+..|...+.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999999872 467888889999988 89999999999988222357778888888887 899
Q ss_pred HHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhc
Q 044628 549 IGLAKWAAEKLLELEPS---KPVNYALVSNVYASE 580 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~ 580 (665)
.++|...++++.+.+|+ ++.+...++.++...
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 99999999999999854 677777777776643
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.2e-15 Score=164.08 Aligned_cols=209 Identities=8% Similarity=-0.004 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC----CChhHHHHHHHHHHhc
Q 044628 382 ETRQVHAYAIKNGVQAFLSIENALINAYSK-------CGSIA-------GALQCFGSVKE----PDLVTWTSIIGAYAFH 443 (665)
Q Consensus 382 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~----~~~~~~~~li~~~~~~ 443 (665)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ .+...|..++..+...
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5667788777653 4467778888887775 69987 89999998763 3577899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHH-HHhcCChHH
Q 044628 444 GLSKESIEVFEKMLSHAVRPDS--IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-SEHYTCLTDL-LGRVGLLVE 519 (665)
Q Consensus 444 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 519 (665)
|++++|.++|+++.+. .|+. ..|..++..+.+.|++++|.++|+...+. .|+ ...|...+.. +...|+.++
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 9999999999999984 6653 47888888888899999999999999873 333 3334333322 346899999
Q ss_pred HHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 520 AYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV----NYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 520 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
|.++|++. ...| +...|..++......|+.+.|+.+++++++..|.++. .|...+......|+.+++..+.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3345 4788999999999999999999999999998877665 6777788888899999999999888
Q ss_pred hhC
Q 044628 594 RDN 596 (665)
Q Consensus 594 ~~~ 596 (665)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.3e-17 Score=162.52 Aligned_cols=263 Identities=10% Similarity=-0.001 Sum_probs=205.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 044628 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371 (665)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 371 (665)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL------------- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-------------
Confidence 34445555556666666666666666665532 23344555555556666666666666655542
Q ss_pred HHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChH
Q 044628 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG-SIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSK 447 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 447 (665)
. +.+..++..+...|...| ++++|...|++..+ .+...|..+...|...|+++
T Consensus 86 ----------------------~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 86 ----------------------Y-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp ----------------------C-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHH
T ss_pred ----------------------C-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHH
Confidence 2 223445566778888889 89999999988653 56778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
+|++.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+ ..+.+...+..+...+.+.|++++|++.++++
T Consensus 143 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 143 QAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999863 23456777788999999999999999999987 23446788999999999999999999999887
Q ss_pred -CC----------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 528 -PI----------EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 528 -~~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
.. ..+..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 11 2346789999999999999999999999999999999999999999999999999999999977643
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.2e-17 Score=165.65 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=89.4
Q ss_pred cCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCc--hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHH
Q 044628 110 KCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV--TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSF 187 (665)
Q Consensus 110 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~--~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 187 (665)
+.|++++|.+.+++++.|+ +|..|..++.+.|+.. ++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677888888888886654 7888888888888776 666654 36778899999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHH
Q 044628 188 ILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS 267 (665)
Q Consensus 188 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 267 (665)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45688899999999999999999988864 67779999999999999999999999976 3688
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHH
Q 044628 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGRE 347 (665)
Q Consensus 268 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 347 (665)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888888876 367888888888888888888877776654 333334467888888888888
Q ss_pred HHHHHHHHhhC
Q 044628 348 AVKLLRDMLQG 358 (665)
Q Consensus 348 A~~~~~~m~~~ 358 (665)
|+.+++.....
T Consensus 226 ai~lLe~aL~l 236 (449)
T 1b89_A 226 LITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhCC
Confidence 88888887654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=4.2e-17 Score=166.71 Aligned_cols=281 Identities=12% Similarity=-0.042 Sum_probs=213.3
Q ss_pred HhcCCHHHHHH-HHhccCC-----C--CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCch
Q 044628 309 AKNGNIDDACR-VFDGMTA-----K--NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380 (665)
Q Consensus 309 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 380 (665)
.-.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33467777777 7765432 1 34567777888888888888888888887653 33556667777777788888
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHH---------------HHHHHHh
Q 044628 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTS---------------IIGAYAF 442 (665)
Q Consensus 381 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~ 442 (665)
+.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888777765 34566778888888888888888888887652 22222221 2334448
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 044628 443 HGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAY 521 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 521 (665)
.|++++|++.|+++.+..... +..++..+...+...|++++|++.|+.+.+. .+.+...|..+..++.+.|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999863221 4678899999999999999999999999873 2345788999999999999999999
Q ss_pred HHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCHHHHHH
Q 044628 522 DLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK-----------PVNYALVSNVYASERCWFDVAR 588 (665)
Q Consensus 522 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~A~~ 588 (665)
+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998 4445 47789999999999999999999999999999887 7889999999999999999999
Q ss_pred HHHHH
Q 044628 589 LRKMM 593 (665)
Q Consensus 589 ~~~~m 593 (665)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.1e-14 Score=155.13 Aligned_cols=353 Identities=10% Similarity=-0.060 Sum_probs=293.9
Q ss_pred CCCchhHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCC
Q 044628 225 CRDLVLWNVMVSCYAL----NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT----LGSSKLGRQIHGLVIKQSFDL 296 (665)
Q Consensus 225 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 296 (665)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3466778888888888 899999999999998865 56677777777777 899999999999999876
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CCchhHHHHHHHHHc----CCChHHHHHHHHHHhhCCCCCCHHHH
Q 044628 297 DVLVATSLVDMYAK----NGNIDDACRVFDGMTA-KNVVSWNTMVVGFGQ----NGDGREAVKLLRDMLQGSFCPDEVTL 367 (665)
Q Consensus 297 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 367 (665)
+...+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66777889999988 8899999999998765 466778888888887 889999999999998875 45556
Q ss_pred HHHHHHhCC----CCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHH
Q 044628 368 ASILSSCGS----LSISCETRQVHAYAIKNGVQAFLSIENALINAYSK----CGSIAGALQCFGSVKE-PDLVTWTSIIG 438 (665)
Q Consensus 368 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 438 (665)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556555554 789999999999998876 45667778888886 8999999999998764 66778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 439 AYAF----HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG-----GLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 439 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
.|.. .++.++|++.|++..+.| +...+..+...+... ++.++|+.+|+...+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8887 899999999999998764 455666677777776 8999999999999872 35667888888
Q ss_pred HHHhcC---ChHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 044628 510 LLGRVG---LLVEAYDLLASMPIEPRSDTLGAFIGACKV----HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS--- 579 (665)
Q Consensus 510 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 579 (665)
+|.+.| ++++|++.|++.-...+...+..|...+.. .++.++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888867 889999999998223567788888888888 899999999999999865 47899999999998
Q ss_pred -cCCHHHHHHHHHHHhhCCC
Q 044628 580 -ERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 580 -~g~~~~A~~~~~~m~~~~~ 598 (665)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.1e-15 Score=150.25 Aligned_cols=269 Identities=10% Similarity=-0.017 Sum_probs=205.1
Q ss_pred HHhcCCHHHHHHHHhccCCCCc----hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhH
Q 044628 308 YAKNGNIDDACRVFDGMTAKNV----VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCET 383 (665)
Q Consensus 308 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 383 (665)
....|+++.|+..++.....+. .....+.++|...|++++|+..++.. -.|+..++..+...+...++.+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456777777777776654332 23445667777777777777655431 345566667777777777777777
Q ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044628 384 RQVHAYAIKNGV-QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR 462 (665)
Q Consensus 384 ~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 462 (665)
.+.++.+...+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777777776664 33455667778899999999999999999 578889999999999999999999999999986 4
Q ss_pred CCHHHH---HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHH
Q 044628 463 PDSIAF---LEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLG 537 (665)
Q Consensus 463 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 537 (665)
|+.... ...+..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|++.++++ ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665321 22334455679999999999999984 4567889999999999999999999999997 5556 577899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 044628 538 AFIGACKVHGSIGL-AKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 538 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
.++..+...|+.++ +.+.++++++++|+++.+ .++..+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 99999999998865 678999999999998654 45566666777665443
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=5.4e-15 Score=159.05 Aligned_cols=398 Identities=11% Similarity=0.036 Sum_probs=277.0
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC--CCchhHHHHHHHH
Q 044628 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC--RDLVLWNVMVSCY 238 (665)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 238 (665)
|...|..++. +...|+++.|..+++.+++. .+.+...|..++..+.+.|++++|+.+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4456666666 36678888888888888875 344677788888888888888888888888744 4666676666432
Q ss_pred -HhcCCchHHHH----HHHHHHHC-CCCCC-HhhHHHHHHHHhc---------cCCcHHHHHHHHHHHHhCCCCchhHHH
Q 044628 239 -ALNCLGDGAIA----VFNLMRLE-GMKGD-YFTFSSLVNSCGT---------LGSSKLGRQIHGLVIKQSFDLDVLVAT 302 (665)
Q Consensus 239 -~~~g~~~~A~~----~~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 302 (665)
...|+.++|.+ +|++.... |..|+ ...|...+..... .|+++.|..+++.+++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 35677776655 66655442 54443 3445555444332 577888888888887731111123333
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHhc-------cC------CCC--------chhHHHHHHHHHcC----CC
Q 044628 303 SLVDMY-------------AKNGNIDDACRVFDG-------MT------AKN--------VVSWNTMVVGFGQN----GD 344 (665)
Q Consensus 303 ~li~~~-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~----g~ 344 (665)
...... .+.++++.|..++.. +. .|+ ...|...+.-.... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 322211 124566777766654 11 111 24566655433332 23
Q ss_pred h----HHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC-------CCchH-------hHHHHHHHHHHhCCCCchhHHHHHH
Q 044628 345 G----REAVKLLRDMLQGSFCPDEVTLASILSSCGS-------LSISC-------ETRQVHAYAIKNGVQAFLSIENALI 406 (665)
Q Consensus 345 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~i~~~~~~~g~~~~~~~~~~li 406 (665)
. ++|+.+|++..... +-+...|......+.+ .|+++ .|..+++..++.-.+.+..++..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3 47788899887742 2345556555555543 78887 8899999888643455688999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhcCCc
Q 044628 407 NAYSKCGSIAGALQCFGSVKE--P-DL-VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSA-CSHGGL 480 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~ 480 (665)
..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...+...... +...|+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999998763 4 33 58999999999999999999999999985 333 3333332222 335899
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 044628 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPR--SDTLGAFIGACKVHGSIGLAKW 554 (665)
Q Consensus 481 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~ 554 (665)
+++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..
T Consensus 407 ~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 407 KSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred hhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999873 2346788999999999999999999999998 33343 4489998998999999999999
Q ss_pred HHHHHHhcCCC
Q 044628 555 AAEKLLELEPS 565 (665)
Q Consensus 555 ~~~~~~~~~p~ 565 (665)
+.+++.+..|+
T Consensus 485 ~~~r~~~~~p~ 495 (530)
T 2ooe_A 485 VEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHCch
Confidence 99999999885
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.5e-13 Score=153.28 Aligned_cols=401 Identities=13% Similarity=0.061 Sum_probs=298.5
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHcccC-CCC-----cccHHHHHHHHHhCCCCc-hHHHHHhhhCCCCCCcchHHHHHH
Q 044628 98 LSLQNQVLHVYVKCKAFDDMEKLFDEMR-VRN-----IVTWNTLISGIINCGGNV-TPYFRRMLLDNVRLDHITFNSLLR 170 (665)
Q Consensus 98 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~~~li~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~ 170 (665)
+.--...+..|...|.+.+|.++++++. .++ ...-|.++....+..... .+...+.. .....-+-.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-------~~d~~eIA~ 1057 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-------NYDAPDIAN 1057 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh-------hccHHHHHH
Confidence 3334567788889999999999999876 222 244666777777774333 44444332 222444667
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 044628 171 ACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV 250 (665)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 250 (665)
.|...|.+++|..+|+... -.....+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7888999999999999862 1222233333 27789999999998774 466789999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCch
Q 044628 251 FNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVV 330 (665)
Q Consensus 251 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 330 (665)
|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++...+. ..++..
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence 9663 467788899999999999999999999888765 44444556999999999999655443 455667
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYS 410 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 410 (665)
.|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..++.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 7888999999999999999999985 37889999999999999999998876 45678888888899
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHH--HHHHHHHhcCCcHHHHHHH
Q 044628 411 KCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAF--LEVLSACSHGGLVSEGLRY 487 (665)
Q Consensus 411 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~--~~ll~a~~~~g~~~~a~~~ 487 (665)
..|++..|...... ...+...+..++..|...|.+++|+.+++..... .|.. ..| ...+.+-.+-++..++.++
T Consensus 1262 e~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999988775 3356667779999999999999999999888754 4443 244 4445555556677777777
Q ss_pred HHHHHHhcCCCC------ChhhHHHHHHHHHhcCChHHHHHHHHhC--------------CCCCChhHHHHHHHHHHhcC
Q 044628 488 FNLMISDYHILP------DSEHYTCLTDLLGRVGLLVEAYDLLASM--------------PIEPRSDTLGAFIGACKVHG 547 (665)
Q Consensus 488 ~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~ll~~~~~~g 547 (665)
|..-. +++| +...|.-++-+|.+.|+++.|...+-+- ....|...+...+..|....
T Consensus 1339 f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1339 FWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 77443 3444 4678999999999999999998443322 12235555555555555444
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-15 Score=161.38 Aligned_cols=364 Identities=11% Similarity=-0.016 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHhccC------------CCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCC---CCC
Q 044628 197 CFVSSALVDLYGKCGFVEDARRVFDEVL------------CRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEG---MKG 261 (665)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p 261 (665)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++..... ..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4567777777777777777777665431 1123456666666666666666666665543210 000
Q ss_pred CHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhccCC--C-CchhHHHHH
Q 044628 262 DYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN--GNIDDACRVFDGMTA--K-NVVSWNTMV 336 (665)
Q Consensus 262 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li 336 (665)
. ......++..+..++.+. +++++|.+.|++..+ | +...+..+.
T Consensus 131 ~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~ 179 (472)
T 4g1t_A 131 Y-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179 (472)
T ss_dssp S-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred c-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0 001122233333333322 235555555554432 2 222333332
Q ss_pred HH---HHcCCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHH----hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044628 337 VG---FGQNGDGREAVKLLRDMLQGSFCPD-EVTLASILSS----CGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408 (665)
Q Consensus 337 ~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~----~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 408 (665)
.. +...++.++|++.|++..+.. |+ ...+..+... ....++.+.|.+.+....+.. +.+..++..+...
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 22 233455556666666555432 22 2222222211 223455566666666655543 3344555666667
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCCHH
Q 044628 409 YSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAF-------------------HGLSKESIEVFEKMLSHAVRPDSI 466 (665)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~ 466 (665)
|.+.|++++|...|++..+ .+...|..+...|.. .+..++|...|++..+.. +.+..
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 335 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFR 335 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhh
Confidence 7777777777777766542 334455555444432 234577888888888752 22345
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh----hHHHHHH-HHHhcCChHHHHHHHHhC-CCCCChhHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE----HYTCLTD-LLGRVGLLVEAYDLLASM-PIEPRSDTLGAFI 540 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 540 (665)
++..+...+...|++++|++.|++..+ +.|+.. .+..+.. .+...|+.++|++.|++. .+.|+...+...
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~- 411 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM- 411 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-
Confidence 677888899999999999999999887 234332 2233333 245789999999999887 677775544333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEE
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWI 607 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i 607 (665)
.+.++.++++.++.+|+++.+|..||.+|...|++++|.+.+++..+.+.......+|+
T Consensus 412 --------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 --------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34566778889999999999999999999999999999999999988776555566774
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=4.7e-17 Score=166.26 Aligned_cols=261 Identities=10% Similarity=-0.059 Sum_probs=199.6
Q ss_pred CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 044628 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407 (665)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 407 (665)
+...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777777777777777777777776643 2345666677777777777777777777777654 334667778888
Q ss_pred HHHhcCCHHHHHHHHhcCCC--C-----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 044628 408 AYSKCGSIAGALQCFGSVKE--P-----------DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-PDSIAFLEVLS 473 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 473 (665)
.|.+.|++++|...|+++.+ | ....+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887753 1 1223445678899999999999999999986322 15678889999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 551 (665)
.+...|++++|+++|+.+.+. .+.+...|..+..+|.+.|++++|++.++++ ...|+ ..+|..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3446888999999999999999999999988 44554 7789999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 552 AKWAAEKLLELEPS------------KPVNYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 552 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
|...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998877 367789999999999999999887764
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1.2e-16 Score=163.25 Aligned_cols=268 Identities=13% Similarity=0.041 Sum_probs=143.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCC
Q 044628 268 SLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGD 344 (665)
Q Consensus 268 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 344 (665)
.+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 33333334444444444444444332 23344445555555555555555555554432 244556666666666666
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044628 345 GREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424 (665)
Q Consensus 345 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (665)
+++|+..|+++.... |+.......+ +..... ..+ ...+..+...+ +.|++++|...|++
T Consensus 148 ~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~~-----------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~ 206 (368)
T 1fch_A 148 QRQACEILRDWLRYT--PAYAHLVTPA------EEGAGG-----------AGL-GPSKRILGSLL-SDSLFLEVKELFLA 206 (368)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhhh-----------hcc-cHHHHHHHHHh-hcccHHHHHHHHHH
Confidence 666666666665532 2211100000 000000 000 00001122222 56666666666665
Q ss_pred CCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 044628 425 VKE--P---DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499 (665)
Q Consensus 425 ~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 499 (665)
+.+ | +...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|++.|+.+.+. .+.
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~ 283 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPG 283 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 542 2 35666667777777777777777777776642 223456666677777777777777777777652 223
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------------hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR------------SDTLGAFIGACKVHGSIGLAKWAAEKLL 560 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 560 (665)
+...+..+..+|.+.|++++|.+.++++ ...|+ ..+|..+..++...|+.++|..++++.+
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 4566677777777777777777777666 11121 4667777777777777777777666544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=3.9e-16 Score=156.43 Aligned_cols=254 Identities=11% Similarity=-0.008 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCC
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSL 377 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 377 (665)
+..+...+.+.|++++|..+|+++.+ .+...|..+...+...|++++|+..|+++...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------- 84 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------- 84 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------
Confidence 44455555555555555555555432 23345555555555555555555555555443
Q ss_pred CchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHH--------------HH-H
Q 044628 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSI--------------IG-A 439 (665)
Q Consensus 378 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~ 439 (665)
. +.+..++..+...|.+.|++++|.+.|+++.+ .+...+..+ .. .
T Consensus 85 ----------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 85 ----------------D-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFF 147 (327)
T ss_dssp ----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CC
T ss_pred ----------------C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 2 22334445555566666666666666655432 122222222 22 3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 519 (665)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 677889999999999999863 335678888899999999999999999999873 33457889999999999999999
Q ss_pred HHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCHHH
Q 044628 520 AYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS------------KPVNYALVSNVYASERCWFD 585 (665)
Q Consensus 520 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~ 585 (665)
|++.++++ ...| +..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99999988 4444 5778899999999999999999999999999999 68899999999999999999
Q ss_pred HHHHHHHH
Q 044628 586 VARLRKMM 593 (665)
Q Consensus 586 A~~~~~~m 593 (665)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 99998754
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.1e-15 Score=150.08 Aligned_cols=247 Identities=9% Similarity=-0.009 Sum_probs=201.1
Q ss_pred HHHHHcCCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044628 336 VVGFGQNGDGREAVKLLRDMLQGSFCPDE--VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCG 413 (665)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 413 (665)
|+-....|++.+|+..+++.... .|+. .....+..++...|+++.+...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999887553 3544 3445667889999999998875543 24567788889999999999
Q ss_pred CHHHHHHHHhcCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 044628 414 SIAGALQCFGSVK----EP-DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYF 488 (665)
Q Consensus 414 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 488 (665)
+.++|.+.++++. .| +...+..+...|...|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566777788999999999999999987 356678888999999999999999999
Q ss_pred HHHHHhcCCCCChhhH---HHHHHHHHhcCChHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 489 NLMISDYHILPDSEHY---TCLTDLLGRVGLLVEAYDLLASM-PIE-PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 489 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
+.+.+. .|+.... ..++..+...|++++|+.+|+++ ... .+...|..+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999873 4654211 23345555669999999999999 323 467889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCHHH-HHHHHHHHhhCC
Q 044628 564 PSKPVNYALVSNVYASERCWFD-VARLRKMMRDNC 597 (665)
Q Consensus 564 p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~~ 597 (665)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568888887543
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=177.81 Aligned_cols=150 Identities=10% Similarity=0.071 Sum_probs=122.1
Q ss_pred CCchHHHHHHHHHHHhCCChHHHHHHHhcc-------CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhH
Q 044628 194 GLNCFVSSALVDLYGKCGFVEDARRVFDEV-------LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTF 266 (665)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 266 (665)
..-..+||+||++||++|++++|.++|++| ..||+++||+||.||++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334678999999999999999999999775 3679999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CchhHHHHHHHHH
Q 044628 267 SSLVNSCGTLGSS-KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-----NVVSWNTMVVGFG 340 (665)
Q Consensus 267 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~ 340 (665)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++.++..+ .+.+...|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 788999999999999999999999998887776666665555444321 1233344445555
Q ss_pred cCC
Q 044628 341 QNG 343 (665)
Q Consensus 341 ~~g 343 (665)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 444
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=3.3e-15 Score=152.48 Aligned_cols=257 Identities=13% Similarity=0.051 Sum_probs=128.7
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHH
Q 044628 272 SCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 348 (665)
.+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...|...|++++|
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHH
Confidence 3333333333333333333332 33444555555666666666666666655532 3455666666777777777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 044628 349 VKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE- 427 (665)
Q Consensus 349 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 427 (665)
+..|+++.... |+.......+ .....++..+...|.+.|++++|...|+++.+
T Consensus 153 ~~~~~~al~~~--p~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 153 CEALKNWIKQN--PKYKYLVKNK------------------------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HHHHHHHHHHC--HHHHCC-------------------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--ccchHHHhhh------------------------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 77777766532 2211100000 00111222333444444444444444444431
Q ss_pred -C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhh
Q 044628 428 -P---DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEH 503 (665)
Q Consensus 428 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 503 (665)
| +...|..+...|...|++++|++.|+++.+.. +.+..++..+..++...|++++|++.|+.+.+. .+.+...
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 283 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRS 283 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHH
Confidence 1 34555555555666666666666666655541 223445556666666666666666666666551 1223555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM-PIEP-------------RSDTLGAFIGACKVHGSIGLAKWAAEK 558 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 558 (665)
|..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666666666666666666655 1111 245677777777777777776666554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.9e-17 Score=174.99 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=113.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044628 394 GVQAFLSIENALINAYSKCGSIAGALQCFGSVK-------EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI 466 (665)
Q Consensus 394 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 466 (665)
....-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344556789999999999999999999997653 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHh
Q 044628 467 AFLEVLSACSHGGL-VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLAS 526 (665)
Q Consensus 467 t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 526 (665)
||+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++...
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 99999999999987 4789999999988 59999999999999888876555544444333
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.4e-14 Score=153.37 Aligned_cols=383 Identities=12% Similarity=0.005 Sum_probs=238.9
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHHHHHh-----C--CCC-chHHHHHHHHHHHhCCChHHHHHHHhccC------
Q 044628 159 RLDHITFNSLLRACVQADDIEVGRRLHSFILKV-----G--FGL-NCFVSSALVDLYGKCGFVEDARRVFDEVL------ 224 (665)
Q Consensus 159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 224 (665)
......|+.+-..+...|+.++|.+.+++.++. + ..| ...+|+.+..+|...|++++|...+++..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567888888999999999999999988763 1 122 35689999999999999999999887652
Q ss_pred -CC----CchhHHHHHHHHHhc--CCchHHHHHHHHHHHCCCCCCH-hhHHHHHHH---HhccCCcHHHHHHHHHHHHhC
Q 044628 225 -CR----DLVLWNVMVSCYALN--CLGDGAIAVFNLMRLEGMKGDY-FTFSSLVNS---CGTLGSSKLGRQIHGLVIKQS 293 (665)
Q Consensus 225 -~~----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g 293 (665)
.+ ...+++.+..++... +++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.++.+++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 234566665566554 4689999999998875 4543 334333333 445678889999999998875
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHhccC---CCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCH-H
Q 044628 294 FDLDVLVATSLVDMYAK----NGNIDDACRVFDGMT---AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDE-V 365 (665)
Q Consensus 294 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 365 (665)
+.+..++..+...+.+ .|+.++|.+.+++.. ..+...|..+...|.+.|++++|+..|++..+. .|+. .
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 5566666666655554 467788999988764 346678899999999999999999999998874 4543 3
Q ss_pred HHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHh
Q 044628 366 TLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAF 442 (665)
Q Consensus 366 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 442 (665)
++..+-..+... +.. ..... ...........+..+.|...|++.. ..+...|..+...|..
T Consensus 283 ~~~~lg~~y~~~-----~~~----~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAK-----VFQ----VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHH-----HHH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHH----hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 333332222110 000 00000 0011111122334567777777654 3566788999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 044628 443 HGLSKESIEVFEKMLSHAVRPDSI--AFLEVLS-ACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 519 (665)
.|++++|++.|++..+....|... .+..+.. ...+.|+.++|++.|++..+ +.|+........ +.
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HH
Confidence 999999999999999864333221 2333332 34578999999999999987 566654333222 33
Q ss_pred HHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 044628 520 AYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574 (665)
Q Consensus 520 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 574 (665)
+.+++++. ...| +..+|..|...+...|+.++|++.++++++++|.+|.++.-+|
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 34444443 2234 5778999999999999999999999999999999888776655
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.5e-14 Score=144.72 Aligned_cols=264 Identities=11% Similarity=-0.015 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 229 VLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMY 308 (665)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 308 (665)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+++.. +.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~------------ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK------------ 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC------------
Confidence 345555566666666666666666665432 1133344444444444455555555554444432 22
Q ss_pred HhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHH--------------HH-
Q 044628 309 AKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL--------------SS- 373 (665)
Q Consensus 309 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~~- 373 (665)
+..+|..+...|...|++++|+..|+++.... |+.......+ ..
T Consensus 88 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 88 -------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------C
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 33445555555555555555555555555432 2111110000 11
Q ss_pred -hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 044628 374 -CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEV 452 (665)
Q Consensus 374 -~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 452 (665)
+...|+++.|...+..+.+.. ..+...|..+...|...|++++|++.
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~ 194 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN--------------------------------PNDAQLHASLGVLYNLSNNYDSAAAN 194 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC--------------------------------CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444444444444444332 12344445555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 044628 453 FEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP 531 (665)
Q Consensus 453 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 531 (665)
++++.+.. +.+..++..+...+...|++++|.+.|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 195 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 195 LRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55555431 122344555555555555555555555555441 1223445555555555555555555555554 1112
Q ss_pred -------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 532 -------------RSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 532 -------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
+..+|..+..++...|+.++|..+++++++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2345555555566666666666655554443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.2e-14 Score=136.14 Aligned_cols=194 Identities=14% Similarity=0.029 Sum_probs=158.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 044628 396 QAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEV 471 (665)
Q Consensus 396 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 471 (665)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566778888899999999999999998753 56788999999999999999999999999986 564 4678888
Q ss_pred HHHHhcC-----------CcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHH
Q 044628 472 LSACSHG-----------GLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGA 538 (665)
Q Consensus 472 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 538 (665)
..++... |++++|++.|++..+ +.| +...|..+..+|...|++++|++.|+++ .+..+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999987 345 5778899999999999999999999998 22267888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
+..++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.1e-14 Score=135.60 Aligned_cols=219 Identities=15% Similarity=0.025 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 330 VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409 (665)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 409 (665)
..|..+...+...|++++|+..|++..+.. .+ ..++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD-----------------------------------ITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC-----------------------------------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc-----------------------------------HHHHHHHHHHH
Confidence 345566666666666666666666665543 33 33445566666
Q ss_pred HhcCCHHHHHHHHhcCCC--C----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044628 410 SKCGSIAGALQCFGSVKE--P----D----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG 479 (665)
Q Consensus 410 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 479 (665)
...|++++|...|++..+ | + ...|..+...|...|++++|++.|++..+. .|+.. .+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHh
Confidence 667777777776666542 1 1 467888888999999999999999999885 45533 355568
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 044628 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAE 557 (665)
Q Consensus 480 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 557 (665)
++++|.+.++.+.. ..+.+...+..+...+.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..++
T Consensus 120 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88999999999887 22335677888899999999999999999988 3344 57788889999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 558 KLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 558 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.1e-14 Score=136.25 Aligned_cols=236 Identities=12% Similarity=0.029 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 044628 298 VLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF--CPDEVTLASILSS 373 (665)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~ 373 (665)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++...... .|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 45788899999999999999999987643 6778899999999999999999999999876321 111100
Q ss_pred hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 044628 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 374 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
...++..+...|.+.|++++|...|++..+ ++ ...+...|++++|.+
T Consensus 78 ------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 78 ------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence 023445566677777777777777776653 33 234666778888999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 044628 452 VFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI 529 (665)
Q Consensus 452 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 529 (665)
.++++... .|+ ...+..+...+...|++++|.+.|+.+.+. .+.+...|..+..+|.+.|++++|++.++++ ..
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99888874 444 356777888888899999999999998873 3345778888999999999999999999888 44
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 044628 530 EP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELE------PSKPVNYALVSN 575 (665)
Q Consensus 530 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 575 (665)
.| +...|..+..++...|+.++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 45 47788888899999999999999999999988 776666655544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.3e-13 Score=134.17 Aligned_cols=241 Identities=10% Similarity=-0.082 Sum_probs=179.7
Q ss_pred cCCChHHHHHHHHHHhhCCCC--C-CHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044628 341 QNGDGREAVKLLRDMLQGSFC--P-DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAG 417 (665)
Q Consensus 341 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 417 (665)
..|++++|+..|+++.+.... | +...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345666666666666654211 1 23455555566666677777777776666654 3356677788889999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 044628 418 ALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISD 494 (665)
Q Consensus 418 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 494 (665)
|.+.|++..+ .+...|..+...|...|++++|.+.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988763 56788999999999999999999999999985 566655555555667779999999999888773
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 495 YHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 495 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
.+++...+ .++..+...++.++|++.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4777888889999999999887 43332 567888889999999999999999999999998644
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 044628 569 NYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
..+.++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4477888899999988765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=5.6e-13 Score=139.68 Aligned_cols=369 Identities=11% Similarity=0.015 Sum_probs=217.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCh---HHHHHHHhccCCCCchhHHHHHHHHHhcC--
Q 044628 168 LLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFV---EDARRVFDEVLCRDLVLWNVMVSCYALNC-- 242 (665)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 242 (665)
+...+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|.+.|++....+...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455667899999999999999887 444555666777778888 89999999887767778888887666666
Q ss_pred ---CchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----
Q 044628 243 ---LGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS---KLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNG---- 312 (665)
Q Consensus 243 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---- 312 (665)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678999999999887642 2555555555544433 34555555555555 3556667777887777
Q ss_pred CHHHHHHHHhccCCCCchhHHHHHHHHHcCC---ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHH
Q 044628 313 NIDDACRVFDGMTAKNVVSWNTMVVGFGQNG---DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAY 389 (665)
Q Consensus 313 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 389 (665)
..+.+..+++.....+...+..|...|.+.| +.++|+..|++..+.|. ++...+..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~-------------------- 218 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDS-------------------- 218 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHH--------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHH--------------------
Confidence 5566667777777777778888888888888 88888888888887763 33332222
Q ss_pred HHHhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHhcCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCC
Q 044628 390 AIKNGVQAFLSIENALINAYSKC----GSIAGALQCFGSVKEPDLVTWTSIIGA-Y--AFHGLSKESIEVFEKMLSHAVR 462 (665)
Q Consensus 390 ~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~ 462 (665)
|..+|... +++++|...|++....+...+..+... | ...++.++|++.|++..+.|
T Consensus 219 ---------------Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 219 ---------------VARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp ---------------HHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred ---------------HHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 22233222 456666666655443344555555555 3 34677777777777777665
Q ss_pred CCHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhCCCCCCh
Q 044628 463 PDSIAFLEVLSACSHGG-----LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR----VGLLVEAYDLLASMPIEPRS 533 (665)
Q Consensus 463 p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~ 533 (665)
+......+...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|.+.|++.-..-+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 4455555555554 34 7777877777664 2355666666666655 34778888888777222234
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--cCCHHHHHHHHHH
Q 044628 534 DTLGAFIGACKV----HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS--ERCWFDVARLRKM 592 (665)
Q Consensus 534 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~A~~~~~~ 592 (665)
.....|...|.. ..|.++|...++++.+.++. .+...+..+... .++.++|.++.++
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555555442 44788888888888776654 333444444322 2344555555443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.9e-13 Score=131.65 Aligned_cols=245 Identities=14% Similarity=0.011 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC
Q 044628 300 VATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGS 376 (665)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 376 (665)
........+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++....+..|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------ 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH------------
Confidence 344566677778888888888877643 34457777777888888888888888777763211211
Q ss_pred CCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHH
Q 044628 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVF 453 (665)
Q Consensus 377 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 453 (665)
....+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11223445555666666666666666544 234556666666777777777777777
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHhC--
Q 044628 454 EKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL---LVEAYDLLASM-- 527 (665)
Q Consensus 454 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-- 527 (665)
++..+. .|+ ...+..+...+...+++++|.+.|+.+.+. .+.+...+..+..++...|+ +++|...++++
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 666654 343 344444442333345777777777777662 22235566666666766666 66666666655
Q ss_pred --CCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 528 --PIEPR------SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 528 --~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11233 2467778888899999999999999999999999888887777665544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=7.8e-13 Score=126.95 Aligned_cols=197 Identities=8% Similarity=-0.074 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSAC 475 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 475 (665)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556677788888889998888888765 3567788888889999999999999999988863 23556788888888
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 044628 476 SHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 552 (665)
...|++++|.++|+.+.+ .+..| +...+..+..++.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998876 33445 4667888888999999999999999887 3344 467788888889999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 553 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999988889999999999999999999999887654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.2e-12 Score=122.93 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=165.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566778888889999999999988765 3567788889999999999999999999998863 3356678888889
Q ss_pred HhcC-CcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHH
Q 044628 475 CSHG-GLVSEGLRYFNLMISDYHILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIG 550 (665)
Q Consensus 475 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 550 (665)
+... |++++|.++++.+.+ .+..|+ ...+..+..++.+.|++++|++.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999887 333343 677888899999999999999999887 3344 4777888888999999999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 551 LAKWAAEKLLELEP-SKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 551 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999 888888899999999999999999998887543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=2.8e-13 Score=129.11 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=145.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
....+..+...+.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. ..+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556667778888888888888887653 466788888888889999999999999888763 3355677888888
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 552 (665)
+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|++.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988773 2346777888888899999999999998887 3334 567788888888899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 553 KWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 553 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888889999999999999999999998887643
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=6.3e-12 Score=120.53 Aligned_cols=205 Identities=15% Similarity=0.036 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044628 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408 (665)
Q Consensus 329 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 408 (665)
...|..+...+...|++++|+..|+++.... |+ +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 4567777778888888888888888776542 21 23344556667
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHH
Q 044628 409 YSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEG 484 (665)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 484 (665)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777788888887777654 246678888888899999999999999998874445644 5677788889999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 485 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
.++|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999998873 2345778889999999999999999999988 4444 4667788888899999999999999999999
Q ss_pred CCCCCchHH
Q 044628 563 EPSKPVNYA 571 (665)
Q Consensus 563 ~p~~~~~~~ 571 (665)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 999766544
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.2e-12 Score=130.91 Aligned_cols=242 Identities=12% Similarity=0.083 Sum_probs=168.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHhCCCCc-hHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD-EVTLASILSSCGSLSI-SCETRQVHAYAIKNGVQAFLSIENALINA 408 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 408 (665)
.|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+-.++...|+ +++|...+..+++.. +.+..+|+.+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4555555555566666666666655543 232 3344444444445553 555555555555543 2345566777778
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc-CCcHHH
Q 044628 409 YSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSH-GGLVSE 483 (665)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~~ 483 (665)
|.+.|++++|...|+++. ..+...|..+..++...|++++|++.|+++++. .| +...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888776 357788888888888899999999999998886 45 45678888888877 566566
Q ss_pred H-----HHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcC--ChHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcC-------
Q 044628 484 G-----LRYFNLMISDYHILP-DSEHYTCLTDLLGRVG--LLVEAYDLLASMPIEPR-SDTLGAFIGACKVHG------- 547 (665)
Q Consensus 484 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------- 547 (665)
| ++.|+..++ +.| +...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477888776 345 4677888888888888 68888888887755554 556777777777763
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 044628 548 --SIGLAKWAAEKL-LELEPSKPVNYALVSNVYASE 580 (665)
Q Consensus 548 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 580 (665)
..++|+.+++++ ++++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 899998888888777766543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=1.2e-11 Score=129.47 Aligned_cols=344 Identities=8% Similarity=-0.060 Sum_probs=225.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044628 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSS---KLGRQIHGLVIKQSFDLDVLVATSLVDMYA 309 (665)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 309 (665)
.+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...++...+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999988763 33344444555566777 8999999888854 4555666666555
Q ss_pred hcC-----CHHHHHHHHhccCCC-CchhHHHHHHHHHcCCChH---HHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCch
Q 044628 310 KNG-----NIDDACRVFDGMTAK-NVVSWNTMVVGFGQNGDGR---EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSIS 380 (665)
Q Consensus 310 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 380 (665)
..| +.++|...|++..++ +...+..|...|...+..+ ++++.+......|. |. ....+-..+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~--a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PE--AGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TT--HHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HH--HHHHHHHHHHcCCCc
Confidence 555 788999999887653 5567888888888766544 45555555555553 22 233333444444544
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CChhHHHHHHHHHHhc----CChHHHH
Q 044628 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCG---SIAGALQCFGSVKE---PDLVTWTSIIGAYAFH----GLSKESI 450 (665)
Q Consensus 381 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 450 (665)
+.+........+.-...+...+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444444333333323334447888999999999 89999999987753 4444556777777554 6899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----ChHHHHH
Q 044628 451 EVFEKMLSHAVRPDSIAFLEVLSA-C--SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG-----LLVEAYD 522 (665)
Q Consensus 451 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 522 (665)
+.|++.. .| +...+..+... + ...+++++|.++|++..+ .| +...+..|..+|. .| ++++|++
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 33 34455555554 3 458999999999999887 23 6777788888887 55 9999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 044628 523 LLASMPIEPRSDTLGAFIGACKV----HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS----ERCWFDVARLRKMMR 594 (665)
Q Consensus 523 ~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~ 594 (665)
.|++.- .-+...+..|...|.. ..+.++|...++++.+. .++.+...|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999987 5567777777766655 34999999999998874 457889999999985 458999999999998
Q ss_pred hCCC
Q 044628 595 DNCD 598 (665)
Q Consensus 595 ~~~~ 598 (665)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 8875
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=7.3e-13 Score=126.22 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=151.4
Q ss_pred CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 044628 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407 (665)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 407 (665)
....|..+...+...|++++|+..|+++.... |+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence 34556666777777777777777777776532 21 2334455666
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHH
Q 044628 408 AYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 484 (665)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. ..+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 7777788888887777654 3467788888889999999999999999998863 33566788888889999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 485 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
.++++.+.+. .+.+...+..+...+.+.|++++|++.++++ ...| +..+|..+...+...|+.++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999998873 3346778889999999999999999999988 3334 4778888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcC
Q 044628 563 EPSKPVNYALVSNVYASER 581 (665)
Q Consensus 563 ~p~~~~~~~~l~~~y~~~g 581 (665)
+|+++.++..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999888877766654433
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.9e-12 Score=115.52 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCL 507 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 507 (665)
+...|..+...|...|++++|++.|++.++. .| +..++..+..++.+.|++++|.+.++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5667888888899999999999999998885 55 4467888888889999999999999988762 33456677778
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 044628 508 TDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585 (665)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 585 (665)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999998887 4445 467788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 044628 586 VARLRKMMRDNC 597 (665)
Q Consensus 586 A~~~~~~m~~~~ 597 (665)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999887654
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.3e-11 Score=120.03 Aligned_cols=224 Identities=11% Similarity=-0.081 Sum_probs=159.7
Q ss_pred CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 044628 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407 (665)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 407 (665)
+..++..+...|...|++++|+..|++..+.+ +... +..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a-----------------------------------~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSG-----------------------------------CFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHH-----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHH-----------------------------------HHHHHH
Confidence 45566777777777788888888887776622 2222 234445
Q ss_pred HHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 044628 408 AYSK----CGSIAGALQCFGSVKE-PDLVTWTSIIGAYAF----HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH- 477 (665)
Q Consensus 408 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 477 (665)
.|.. .|++++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 6666666666665542 356667777777777 788888888888877764 55667777777777
Q ss_pred ---CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHh----c
Q 044628 478 ---GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR----VGLLVEAYDLLASMPIEPRSDTLGAFIGACKV----H 546 (665)
Q Consensus 478 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~ 546 (665)
.+++++|+++|+...+. + +...+..+..+|.+ .+++++|++.+++.--..+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 78888888888887762 2 55667777777777 78888888888776111345667777777777 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 044628 547 GSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS----ERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 547 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 598 (665)
++.++|+..++++++.+| +..+..++.+|.. .|++++|.+.+++..+.+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888888866 5778888888888 8888888888888876653
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=2e-12 Score=125.72 Aligned_cols=219 Identities=11% Similarity=-0.103 Sum_probs=181.8
Q ss_pred hCCCCchHhHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChH
Q 044628 374 CGSLSISCETRQVHAYAIKNGV---QAFLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSK 447 (665)
Q Consensus 374 ~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 447 (665)
....|+++.|...+..+.+... +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988642 2356788899999999999999999999876 356889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 448 ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
+|++.|+++.+.. +.+..++..+...+...|++++|.++|+.+.+ +.|+..........+.+.|++++|.+.+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999863 33567888999999999999999999999987 3566555555666677889999999999776
Q ss_pred -C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 528 -P-IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS----KPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 528 -~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
. ..++...| .++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|...+++.....
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 23344444 4677778888999999999999987774 36788999999999999999999999998654
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=5.1e-13 Score=138.56 Aligned_cols=265 Identities=10% Similarity=0.017 Sum_probs=174.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CC-c----hhHHHHHHHHHcCCChHHHHHHHHHHhhCCC-CCCHHHHHHHH
Q 044628 300 VATSLVDMYAKNGNIDDACRVFDGMTA--KN-V----VSWNTMVVGFGQNGDGREAVKLLRDMLQGSF-CPDEVTLASIL 371 (665)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll 371 (665)
.+..+...+...|++++|...|++..+ ++ . ..|..+...|...|++++|+..|++.....- ..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR------- 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc-------
Confidence 344556666777777777777766643 22 2 3566666777777777777777776543200 0000
Q ss_pred HHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHh
Q 044628 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---------PDLVTWTSIIGAYAF 442 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~ 442 (665)
.....++..+...|...|++++|...|++..+ .....|..+...|..
T Consensus 123 ------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 123 ------------------------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 11223345555666666666666666655432 123466667777777
Q ss_pred cCC-----------------hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Q 044628 443 HGL-----------------SKESIEVFEKMLSH----AVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500 (665)
Q Consensus 443 ~g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 500 (665)
.|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|++++++..+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 777 77777777776542 11121 236677777888888888888888887662211122
Q ss_pred ----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCC---C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 044628 501 ----SEHYTCLTDLLGRVGLLVEAYDLLASM-PIE---P----RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK-- 566 (665)
Q Consensus 501 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 566 (665)
...+..+..+|...|++++|++.+++. ... . ...++..+...+...|++++|...+++++++.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 236778888888999999998888876 111 1 14567777888899999999999999998765442
Q ss_pred ----CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 567 ----PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 567 ----~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
...+..++.+|...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788899999999999999999988754
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=1.8e-11 Score=119.03 Aligned_cols=225 Identities=14% Similarity=0.000 Sum_probs=171.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CchhHHHHHHHHHc----CCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTAK-NVVSWNTMVVGFGQ----NGDGREAVKLLRDMLQGSFCPDEVTLASI 370 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 370 (665)
.+...+..+...|.+.|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~--- 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC--- 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH---
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH---
Confidence 36677888999999999999999999987654 55678888899999 999999999999987764 33333
Q ss_pred HHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh---
Q 044628 371 LSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK----CGSIAGALQCFGSVKE-PDLVTWTSIIGAYAF--- 442 (665)
Q Consensus 371 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 442 (665)
..+..+|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 78 --------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 78 --------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV 125 (273)
T ss_dssp --------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS
T ss_pred --------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCC
Confidence 334445555 6666666666665542 456677777777777
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 044628 443 -HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSH----GGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR---- 513 (665)
Q Consensus 443 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 513 (665)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|++.|+...+. .+...+..+..+|.+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 888888888888888765 45566666666766 78888888888888762 346677788888888
Q ss_pred cCChHHHHHHHHhC-CCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 044628 514 VGLLVEAYDLLASM-PIEPRSDTLGAFIGACKV----HGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 514 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 566 (665)
.+++++|++.+++. ...| ...+..+...+.. .++.++|...++++++++|++
T Consensus 199 ~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88999999988887 3333 6667777777887 889999999999999988864
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.2e-11 Score=116.13 Aligned_cols=208 Identities=15% Similarity=0.026 Sum_probs=160.9
Q ss_pred CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 044628 328 NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALIN 407 (665)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 407 (665)
+...|..+...+...|++++|+..|+++.... |+ +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 34566777777777777777777777776532 22 2234455666
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHH
Q 044628 408 AYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFH-GLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVS 482 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 482 (665)
.|...|++++|.+.|+++. ..+...|..+...|... |++++|++.++++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 7777788888888777664 34667888889999999 999999999999988434454 357888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP--RSDTLGAFIGACKVHGSIGLAKWAAEKL 559 (665)
Q Consensus 483 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 559 (665)
+|++.|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +...+..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999873 2335788899999999999999999999988 3333 4666777777788999999999999999
Q ss_pred HhcCCCCCchHHHH
Q 044628 560 LELEPSKPVNYALV 573 (665)
Q Consensus 560 ~~~~p~~~~~~~~l 573 (665)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999987766544
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.5e-12 Score=132.90 Aligned_cols=266 Identities=12% Similarity=0.039 Sum_probs=147.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C----chhHHHHHHHHHcCCChHHHHHHHHHHhhC----CCCCCH
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTA--K-N----VVSWNTMVVGFGQNGDGREAVKLLRDMLQG----SFCPDE 364 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~ 364 (665)
.....+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++.... +-.|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG- 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-
Confidence 3445566677777778888888888776643 2 2 245667777777788888888777776432 11111
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHH
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PD----LVTWTS 435 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 435 (665)
...++..+...|...|++++|...|++..+ .+ ..++..
T Consensus 86 ---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 132 (406)
T 3sf4_A 86 ---------------------------------EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 132 (406)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 122233444455555555555555544331 11 224555
Q ss_pred HHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHH
Q 044628 436 IIGAYAFHGL--------------------SKESIEVFEKMLSH----AVRPD-SIAFLEVLSACSHGGLVSEGLRYFNL 490 (665)
Q Consensus 436 li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 490 (665)
+...|...|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|.+.++.
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555666 66666665554431 11111 12455555566666666666666666
Q ss_pred HHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 491 MISDYHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEK 558 (665)
Q Consensus 491 ~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 558 (665)
..+...-.++ ...+..+..+|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5542111111 225556666666666666666666655 11111 33455556666666777777777766
Q ss_pred HHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 559 LLELEPSK------PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 559 ~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
++++.+.. ...+..++.+|...|++++|...+++..+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66554332 34566666777777777777766666543
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=2.9e-12 Score=130.09 Aligned_cols=225 Identities=11% Similarity=0.068 Sum_probs=191.6
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCCC---CChhHHHHHHHHH
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS-IAGALQCFGSVKE---PDLVTWTSIIGAY 440 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 440 (665)
..+..+-..+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556666778899999999999999876 4467788899999999997 9999999998863 6788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHh-cCCh
Q 044628 441 AFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGR-VGLL 517 (665)
Q Consensus 441 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 517 (665)
...|++++|+..|+++++. .| +...|..+..++...|++++|++.|+++++ +.| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999996 55 557899999999999999999999999998 344 67889999999999 6766
Q ss_pred HHH-----HHHHHhC-CCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-------
Q 044628 518 VEA-----YDLLASM-PIEP-RSDTLGAFIGACKVHG--SIGLAKWAAEKLLELEPSKPVNYALVSNVYASER------- 581 (665)
Q Consensus 518 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 581 (665)
++| ++.++++ .+.| +...|..+...+...| +.++|...++++ +.+|+++.++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 888 4777777 5566 4678988888888888 689999999998 999999999999999999975
Q ss_pred --CHHHHHHHHHHH-hhC
Q 044628 582 --CWFDVARLRKMM-RDN 596 (665)
Q Consensus 582 --~~~~A~~~~~~m-~~~ 596 (665)
..++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999988 543
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.1e-12 Score=138.33 Aligned_cols=192 Identities=12% Similarity=0.030 Sum_probs=165.1
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSI-AGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLS 473 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 473 (665)
+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455566677777777888 88888877765 245778999999999999999999999999985 688788888899
Q ss_pred HHhcC---------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC----
Q 044628 474 ACSHG---------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV--------GLLVEAYDLLASM-PIEP---- 531 (665)
Q Consensus 474 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 531 (665)
.+... |++++|++.|++..+. .+.+...|..+..+|... |++++|++.|+++ ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999872 233578899999999998 9999999999998 5556
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
+...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67789999999999999999999999999999999999999999999999999999765443
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=1.6e-11 Score=119.13 Aligned_cols=239 Identities=10% Similarity=0.033 Sum_probs=186.8
Q ss_pred HhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCch----hHHHHH
Q 044628 263 YFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA--KNVV----SWNTMV 336 (665)
Q Consensus 263 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 336 (665)
...+......+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455666778889999999999999999875 45666888999999999999999999998765 2322 388999
Q ss_pred HHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044628 337 VGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIA 416 (665)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 416 (665)
..|...|++++|+..|++..+.. |+ +..++..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~----------------------------------~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TT----------------------------------RLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TT----------------------------------CTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cc----------------------------------cHHHHHHHHHHHHHccCHH
Confidence 99999999999999999987732 22 2345567888999999999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCc---HHHHHHHHH
Q 044628 417 GALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGL---VSEGLRYFN 489 (665)
Q Consensus 417 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~ 489 (665)
+|...|++..+ .+...|..+...+...+++++|++.|+++.+. .|+ ...+..+..++...|+ .++|...++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 99999998874 45667777773444556999999999999986 454 5667777777777777 888999999
Q ss_pred HHHHhcCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHH
Q 044628 490 LMISDYHILPD------SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFI 540 (665)
Q Consensus 490 ~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 540 (665)
.+.+...-.|+ ...|..+...|.+.|++++|.+.++++ .+.|+ ...+..+.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 88774333344 257888999999999999999999998 55665 44444443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=134.10 Aligned_cols=283 Identities=14% Similarity=0.049 Sum_probs=177.8
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCchhHHHHH
Q 044628 270 VNSCGTLGSSKLGRQIHGLVIKQSFDLD----VLVATSLVDMYAKNGNIDDACRVFDGMTA---------KNVVSWNTMV 336 (665)
Q Consensus 270 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li 336 (665)
...+...|++++|...++.+++.+ +.+ ..++..+...|...|++++|...|++..+ ....+|..+.
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 333444444444444444444442 111 23455556666666666666666555421 1234567777
Q ss_pred HHHHcCCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-
Q 044628 337 VGFGQNGDGREAVKLLRDMLQGSF-CPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS- 414 (665)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~- 414 (665)
..|...|++++|+..|++...... .++... ...++..+...|...|+
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccc-------------------------------hHHHHHHHHHHHHHcCCc
Confidence 788888888888888877654210 011100 01122334444445555
Q ss_pred -------------------HHHHHHHHhcCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-
Q 044628 415 -------------------IAGALQCFGSVKE---------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPD- 464 (665)
Q Consensus 415 -------------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 464 (665)
+++|...|++..+ .....|..+...|...|++++|++.+++..+... .++
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 5555554443321 1234677778888888888888888888775311 122
Q ss_pred ---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-
Q 044628 465 ---SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPR- 532 (665)
Q Consensus 465 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~- 532 (665)
..++..+...+...|++++|...++.......-.++ ...+..+...|.+.|++++|.+.+++. +..++
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 136777788888999999999999887652211122 557788888999999999999998877 11122
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCHH
Q 044628 533 ---SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS------KPVNYALVSNVYASERCWF 584 (665)
Q Consensus 533 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~ 584 (665)
..++..+...+...|++++|...+++++++.+. ...++..++.+|...|+..
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 556778888899999999999999999876433 3557778889998888764
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=1.4e-12 Score=130.64 Aligned_cols=265 Identities=12% Similarity=0.049 Sum_probs=177.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-C----chhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTA--K-N----VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSS 373 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 373 (665)
+......+...|++++|...|++..+ + + ...|..+...|...|++++|+..+++.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 33445556666666666666665532 2 1 2345556666666666666666666544310
Q ss_pred hCCCCchHhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhc
Q 044628 374 CGSLSISCETRQVHAYAIKNGVQ-AFLSIENALINAYSKCGSIAGALQCFGSVKE-----PD----LVTWTSIIGAYAFH 443 (665)
Q Consensus 374 ~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 443 (665)
.+.+.. ....++..+...|...|++++|...|++..+ .+ ..++..+...|...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 000111 1133455666677777777777777766542 22 33677777778888
Q ss_pred CC--------------------hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Q 044628 444 GL--------------------SKESIEVFEKMLSH----AVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL 498 (665)
Q Consensus 444 g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 498 (665)
|+ +++|.+.+++.... +-.|. ..++..+...+...|++++|.+.++...+...-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 88 88888888776542 11121 2357777788888999999999998887532111
Q ss_pred CC----hhhHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 499 PD----SEHYTCLTDLLGRVGLLVEAYDLLASM-P---IEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 499 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
++ ...+..+...+.+.|++++|.+.+++. . ..++ ..++..+...+...|++++|...+++++++.|..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 337788888999999999999998876 1 1112 4567777888999999999999999998875543
Q ss_pred ------CchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 567 ------PVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 567 ------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..++..++.+|...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347889999999999999999999988764
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=7.2e-12 Score=117.17 Aligned_cols=192 Identities=15% Similarity=0.028 Sum_probs=90.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 044628 295 DLDVLVATSLVDMYAKNGNIDDACRVFDGMTA---KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASIL 371 (665)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 371 (665)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~------- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY------- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc-------
Confidence 34555556666666666666666666665533 23445566666666666666666666665543 2322
Q ss_pred HHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHhcCCC---CChhHHHHHH
Q 044628 372 SSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-----------GSIAGALQCFGSVKE---PDLVTWTSII 437 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li 437 (665)
...+..+...|.+. |++++|...|++..+ .+...|..+.
T Consensus 73 ---------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg 125 (217)
T 2pl2_A 73 ---------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125 (217)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 12222333333333 555555555554431 2344455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 044628 438 GAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL 517 (665)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 517 (665)
..|...|++++|++.|++..+.. .+...+..+..++...|++++|+..|+.+.+. -+.+...+..+..++.+.|++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC----
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCH
Confidence 55555555555555555555543 34444555555555555555555555555441 112344445555555555555
Q ss_pred HHHHHHHHh
Q 044628 518 VEAYDLLAS 526 (665)
Q Consensus 518 ~~A~~~~~~ 526 (665)
++|++.+++
T Consensus 202 ~~A~~~~~~ 210 (217)
T 2pl2_A 202 EEAARAAAL 210 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 555555544
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1e-09 Score=118.92 Aligned_cols=409 Identities=12% Similarity=0.044 Sum_probs=244.5
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---hHHHHHHHhccCC-----CCchhHH
Q 044628 161 DHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGF---VEDARRVFDEVLC-----RDLVLWN 232 (665)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-----~~~~~~~ 232 (665)
|..+|..++..+.+.+.++.+..+++.+++. ++.....|...+..-.+.|. ++.+..+|++... +++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4455555555555556666666666666655 34455556666666666666 6666666665522 4555555
Q ss_pred HHHHHHHhcCCc----hH----HHHHHHHHHH-CCC-CCCH-hhHHHHHHHHh---------ccCCcHHHHHHHHHHHHh
Q 044628 233 VMVSCYALNCLG----DG----AIAVFNLMRL-EGM-KGDY-FTFSSLVNSCG---------TLGSSKLGRQIHGLVIKQ 292 (665)
Q Consensus 233 ~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 292 (665)
.-+....+.++. ++ ..++|+.... .|. .|+. ..|...+.... ..++++.+..+|..++..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 555544443332 12 2345554332 244 3432 33333333221 112344555666655532
Q ss_pred CCCCchhHHHHHHHHHH-------------hcCCHHHHHHHHhcc-------CC--C--------------C------ch
Q 044628 293 SFDLDVLVATSLVDMYA-------------KNGNIDDACRVFDGM-------TA--K--------------N------VV 330 (665)
Q Consensus 293 g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~-------~~--~--------------~------~~ 330 (665)
....-..+|......-- ...+++.|...+.++ .. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 11111122211111100 011233344444331 10 0 0 12
Q ss_pred hHHHHHHHHHcCC-------ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHH-HHHHHHHHhCCCCchhHH
Q 044628 331 SWNTMVVGFGQNG-------DGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETR-QVHAYAIKNGVQAFLSIE 402 (665)
Q Consensus 331 ~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~ 402 (665)
.|...+.---.++ ..+.+..+|++....- .-+...|.....-+...|+.+.|. .++...+.. .+.+..++
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 3555554333332 1234556777776542 234455555555556667888886 999988864 35567778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------------hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044628 403 NALINAYSKCGSIAGALQCFGSVKE-------------PD------------LVTWTSIIGAYAFHGLSKESIEVFEKML 457 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 457 (665)
-.++...-+.|++++|.++|+++.+ |+ ...|-..+....+.|..+.|..+|.+.+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888999999999999999998763 21 2368888888888899999999999998
Q ss_pred Hc-CCCCCHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC--
Q 044628 458 SH-AVRPDSIAFL--EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-- 531 (665)
Q Consensus 458 ~~-g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-- 531 (665)
+. + .+....|. +.+.-. ..++.+.|..+|+...+. .+-+...|...++.....|+.+.|..+|++. ...|
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HhcC-CCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 86 2 11223333 333322 245699999999999984 4446667788899999999999999999998 3333
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 532 --RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 532 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
....|...+..-..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 246799999888999999999999999999999864 334444444
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=1.2e-11 Score=112.39 Aligned_cols=167 Identities=18% Similarity=0.104 Sum_probs=145.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
+..+|..|...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+..+++..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56788899999999999999999999876 3577889999999999999999999999998863 3345667777788
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 552 (665)
+...++++.|.+.+....+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999999872 3346788899999999999999999999988 5555 577899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 044628 553 KWAAEKLLELEPSKP 567 (665)
Q Consensus 553 ~~~~~~~~~~~p~~~ 567 (665)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=1.2e-11 Score=135.74 Aligned_cols=162 Identities=19% Similarity=0.242 Sum_probs=142.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTC 506 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 506 (665)
+...|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|++.|++..+ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3567888899999999999999999999885 665 46788889999999999999999999887 345 4778999
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHH
Q 044628 507 LTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWF 584 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 584 (665)
+..+|.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988 56664 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 044628 585 DVARLRKMMRD 595 (665)
Q Consensus 585 ~A~~~~~~m~~ 595 (665)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877653
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=6.8e-12 Score=130.00 Aligned_cols=270 Identities=14% Similarity=0.055 Sum_probs=194.4
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCch
Q 044628 264 FTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDV----LVATSLVDMYAKNGNIDDACRVFDGMTA---------KNVV 330 (665)
Q Consensus 264 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~ 330 (665)
..+..+...+...|++++|...++.+++.+ +.+. .++..+...|...|++++|...|++..+ ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556667889999999999999999985 3333 5788899999999999999999887643 1335
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044628 331 SWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY 409 (665)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 409 (665)
+|..+...|...|++++|+..|++....... .+. .....++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-------------------------------LSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-------------------------------HHHHHHHHHHHHHH
Confidence 6888888999999999999999887652100 000 01122334455556
Q ss_pred HhcCC-----------------HHHHHHHHhcCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-
Q 044628 410 SKCGS-----------------IAGALQCFGSVKE---------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR- 462 (665)
Q Consensus 410 ~~~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 462 (665)
...|+ +++|.+.|++..+ .....|..+...|...|++++|++.|++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 66666 6666665554431 12346777888888899999999988887763111
Q ss_pred CC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC-CC----
Q 044628 463 PD----SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM-PI---- 529 (665)
Q Consensus 463 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 529 (665)
++ ..++..+...+...|++++|.+.++.......-..+ ...+..+..+|.+.|++++|.+.+++. .+
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 126777888899999999999999888763211111 467788889999999999999999887 11
Q ss_pred --CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 530 --EP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 530 --~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
.+ ...++..+...+...|+.++|...+++++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 11 1346777888899999999999999999988765
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=2.8e-10 Score=112.66 Aligned_cols=185 Identities=11% Similarity=0.026 Sum_probs=125.1
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 044628 381 CETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE--P-DLV-TWTSIIGAYAFHGLSKESIEVFEKM 456 (665)
Q Consensus 381 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 456 (665)
++|..+++..++.-.+.+...+..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555421223445666777777777888888888877653 3 333 6888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-C---CCC
Q 044628 457 LSHAVRPDSIAFLEVLSAC-SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-P---IEP 531 (665)
Q Consensus 457 ~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p 531 (665)
.+.. +++...|....... ...|++++|.++|+...+. .+-+...|..+++.+.+.|++++|..+|+++ . +.|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 7753 22334444333322 2368888888888888763 2335677778888888888888888888877 2 344
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 532 R--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 532 ~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
+ ...|..++......|+.+.|..+++++++..|+++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 3 557777777778888888888888888888887553
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=2.2e-11 Score=121.87 Aligned_cols=236 Identities=16% Similarity=0.064 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCC-CCCHHHHH
Q 044628 299 LVATSLVDMYAKNGNIDDACRVFDGMTA---------KNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF-CPDEVTLA 368 (665)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~ 368 (665)
.++..+...|...|++++|.+.|++..+ ....+|..+...|...|++++|+..|++...... .++...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 121 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-- 121 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH--
Confidence 3445555556666666666665554321 1234566777778888888888888777654210 011110
Q ss_pred HHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHhcCCC-
Q 044628 369 SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGS--------------------IAGALQCFGSVKE- 427 (665)
Q Consensus 369 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~- 427 (665)
...++..+...|...|+ +++|.+.+++..+
T Consensus 122 -----------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 122 -----------------------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 01122333444444444 4555544443321
Q ss_pred --------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 044628 428 --------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPD----SIAFLEVLSACSHGGLVSEGLRYFNLMISD 494 (665)
Q Consensus 428 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 494 (665)
.....+..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|.++++.....
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1133566777778888888888888887765310 111 126677777888888999998888887652
Q ss_pred cCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 495 YHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM-PI---EPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 495 ~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
..-.++ ...+..+...|...|++++|.+.++++ .. .++ ..++..+...+...|++++|...+++++++
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 211122 456778888899999999999988876 11 111 446777888899999999999999999988
Q ss_pred CCC
Q 044628 563 EPS 565 (665)
Q Consensus 563 ~p~ 565 (665)
.+.
T Consensus 333 ~~~ 335 (338)
T 3ro2_A 333 SRE 335 (338)
T ss_dssp ---
T ss_pred HHh
Confidence 765
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=4.1e-09 Score=114.17 Aligned_cols=413 Identities=9% Similarity=0.013 Sum_probs=281.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCC---CCchhHHHHHHHHHhcCC---chHHHHHHHHHH
Q 044628 182 RRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLC---RDLVLWNVMVSCYALNCL---GDGAIAVFNLMR 255 (665)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 255 (665)
...++..++.. +-|...|..++..+.+.+.++.++.+|+++.. .....|...+..-.+.|. .+.+..+|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 33445555554 45899999999999999999999999998843 356678888888888898 999999999998
Q ss_pred HCC-CCCCHhhHHHHHHHHhccCCc--------HHHHHHHHHHHHh-CC-CC-chhHHHHHHHHHHh---------cCCH
Q 044628 256 LEG-MKGDYFTFSSLVNSCGTLGSS--------KLGRQIHGLVIKQ-SF-DL-DVLVATSLVDMYAK---------NGNI 314 (665)
Q Consensus 256 ~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~-~~~~~~~li~~~~~---------~g~~ 314 (665)
... ..|+...|..-+.-....++. +...++|+.++.. |. .+ +...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 764 237777777666655444443 3445778777653 65 45 34688888876543 3457
Q ss_pred HHHHHHHhccCC-CC--c-hhH---HHHHHHHH----------cCCChHHHHHHHHHHhh--CCCC--------------
Q 044628 315 DDACRVFDGMTA-KN--V-VSW---NTMVVGFG----------QNGDGREAVKLLRDMLQ--GSFC-------------- 361 (665)
Q Consensus 315 ~~A~~~~~~~~~-~~--~-~~~---~~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~-------------- 361 (665)
+.+..+|++... |. . .+| ..+...+. ...+++.|...+.++.. .++.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 889999998875 21 1 223 22222210 01123445555554321 1111
Q ss_pred -C-----C---HHHHHHHHHHhCCCC-------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhc
Q 044628 362 -P-----D---EVTLASILSSCGSLS-------ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGAL-QCFGS 424 (665)
Q Consensus 362 -p-----~---~~t~~~ll~~~~~~~-------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~ 424 (665)
| + ...|...+.---..+ ..+....+|+..+.. ++....+|-..+..+.+.|+.++|. ++|++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 0 012222222211111 123345667776664 3446677777888888899999996 99988
Q ss_pred CCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhcCCc
Q 044628 425 VKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV---------RPD------------SIAFLEVLSACSHGGL 480 (665)
Q Consensus 425 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~ 480 (665)
... .+...|-..+...-..|++++|.++|++++.... .|+ ...|...+....+.|.
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 753 4666788888899999999999999999987410 142 2357777777778899
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 044628 481 VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG-LLVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGLAKWAAE 557 (665)
Q Consensus 481 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 557 (665)
.+.|..+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+......|+.+.|+.+|+
T Consensus 450 l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 450 LAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998731 1123445555555555655 489999999988 222356678888888888999999999999
Q ss_pred HHHhcCCC---CCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 558 KLLELEPS---KPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 558 ~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
++++..|+ ....|..+...-.+.|+.+.+.++.+++.+.-
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998883 44667788888889999999999999997543
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=5.1e-11 Score=107.77 Aligned_cols=160 Identities=15% Similarity=-0.006 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 044628 434 TSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR 513 (665)
Q Consensus 434 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 513 (665)
..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 334444444444444444444444321 112334444444555555555555555555441 12234555555666666
Q ss_pred cCChHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 044628 514 VGLLVEAYDLLASM-PIE-PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 514 ~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 591 (665)
.|++++|.+.++++ ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655 222 2455666777777777888888888888888888777778888888888888888888877
Q ss_pred HHhhC
Q 044628 592 MMRDN 596 (665)
Q Consensus 592 ~m~~~ 596 (665)
+..+.
T Consensus 169 ~~~~~ 173 (186)
T 3as5_A 169 KANEL 173 (186)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 76543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=1.7e-10 Score=118.33 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=118.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----C----CchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHH
Q 044628 304 LVDMYAKNGNIDDACRVFDGMTA-----K----NVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFC-PDEVTLASILSS 373 (665)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~ 373 (665)
....+...|++++|...|++..+ + ...+|..+...|...|++++|+..+.+....-.. ++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 44556667777777777766533 1 1245666667777777777777776665431000 0000
Q ss_pred hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhcC
Q 044628 374 CGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PD----LVTWTSIIGAYAFHG 444 (665)
Q Consensus 374 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 444 (665)
.....+++.+...|...|++++|...|++..+ .+ ..++..+...|...|
T Consensus 181 ----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 181 ----------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 00122345556666666666666666655431 11 135666666677777
Q ss_pred ChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC
Q 044628 445 LSKESIEVFEKMLSH----AVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD---SEHYTCLTDLLGRVGL 516 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 516 (665)
++++|++.|++..+. +..|+. .++..+...+...|++++|.+.+++..+...-..+ ...+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 777777777666651 221322 35666666666667777776666665542111111 1123444455555555
Q ss_pred ---hHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 517 ---LVEAYDLLASMPIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 517 ---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
+++|++++++.+..|+ ...+..+...+...|++++|...++++++
T Consensus 319 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555533222 22333344444444555555554444443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=125.95 Aligned_cols=239 Identities=15% Similarity=0.122 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044628 329 VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINA 408 (665)
Q Consensus 329 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 408 (665)
..+|..+...|...|++++|+.+|+++...... ......+....++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK----------------------------TSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------------HcCCCCHHHHHHHHHHHHH
Confidence 456788888888899999999888887652000 0000001112223344445
Q ss_pred HHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCH-HHHHH
Q 044628 409 YSKCGSIAGALQCFGSVKE-----------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH------AVRPDS-IAFLE 470 (665)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ 470 (665)
|...|++++|...|++..+ .....|..+...|...|++++|.+.|+++.+. +-.|+. ..+..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 5555555555555544321 12345566666667777777777777766653 222322 35666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-h
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDY-----HILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-P---------IEPR-S 533 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~ 533 (665)
+...+...|++++|+++|+.+.+.. +..| ....+..+..+|.+.|++++|.+.++++ . ..+. .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 6677777777777777777776521 1112 2445667777777777777777777665 1 1111 1
Q ss_pred hHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 534 DTLGA------FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 534 ~~~~~------ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
..|.. +...+...+.+.++...++++.+..|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12222 222233444555666677777777788788888899999999999999988887754
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=8.2e-11 Score=110.87 Aligned_cols=164 Identities=10% Similarity=-0.065 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHH
Q 044628 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLT 508 (665)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 508 (665)
...|......+...|++++|++.|++..+....++...+..+..++...|++++|++.|+...+ ..| +...|..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHH
Confidence 3444444445555555555555555555443223444444444455555555555555555544 122 234444555
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHH
Q 044628 509 DLLGRVGLLVEAYDLLASM-PIEPR-S-------DTLGAFIGACKVHGSIGLAKWAAEKLLELEPS--KPVNYALVSNVY 577 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y 577 (665)
.+|.+.|++++|++.+++. ...|+ . ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555555544 22222 2 23444444445555555555555555555555 555555555555
Q ss_pred HhcCCH---------------------------HHHHHHHHHHhhC
Q 044628 578 ASERCW---------------------------FDVARLRKMMRDN 596 (665)
Q Consensus 578 ~~~g~~---------------------------~~A~~~~~~m~~~ 596 (665)
...|+. ++|...+++..+.
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555544 8888888877754
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=3.7e-10 Score=111.79 Aligned_cols=212 Identities=8% Similarity=-0.016 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCCC----CChhHHHHHHHHHHhc
Q 044628 382 ETRQVHAYAIKNGVQAFLSIENALINAYS-------KCGSI-------AGALQCFGSVKE----PDLVTWTSIIGAYAFH 443 (665)
Q Consensus 382 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 443 (665)
.|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++..+ .+...|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444444444432 234444555555544 45776 899999997653 3556899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChHHH
Q 044628 444 GLSKESIEVFEKMLSHAVRPDS-I-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG-RVGLLVEA 520 (665)
Q Consensus 444 g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 520 (665)
|++++|.++|++..+. .|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999984 6653 3 7888889999999999999999999872 2344555554444432 37999999
Q ss_pred HHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 521 YDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLEL---EPS-KPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 521 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
.++|+++ ...| +...|..++..+...|+.++|+.+++++++. .|+ ....|..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988 3334 5778999999999999999999999999995 553 56788899999999999999999999988
Q ss_pred hCCC
Q 044628 595 DNCD 598 (665)
Q Consensus 595 ~~~~ 598 (665)
+...
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 6544
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=6.3e-11 Score=124.85 Aligned_cols=178 Identities=11% Similarity=-0.020 Sum_probs=156.8
Q ss_pred HHHHHHHHhcCC---CCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHH
Q 044628 415 IAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLS-KESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFN 489 (665)
Q Consensus 415 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 489 (665)
+++|...+++.. ..+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665543 35778899999999999999 9999999999986 554 6789999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc--------CCHH
Q 044628 490 LMISDYHILPDSEHYTCLTDLLGRV---------GLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVH--------GSIG 550 (665)
Q Consensus 490 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 550 (665)
...+ +.|+...+..+..+|... |++++|++.++++ ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 568888899999999999 9999999999998 4555 477899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 551 LAKWAAEKLLELEP---SKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 551 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+|+..++++++++| +++.+|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 899999999999999999999999999987654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=2.6e-10 Score=103.02 Aligned_cols=168 Identities=15% Similarity=0.026 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456678889999999999999999874 467789999999999999999999999999863 335678888889999
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKW 554 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 554 (665)
..|++++|.++++.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +...|..+...+...|+.++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999873 3456788899999999999999999999988 3334 56788889999999999999999
Q ss_pred HHHHHHhcCCCCCchH
Q 044628 555 AAEKLLELEPSKPVNY 570 (665)
Q Consensus 555 ~~~~~~~~~p~~~~~~ 570 (665)
.++++++..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999876543
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=4.6e-11 Score=122.53 Aligned_cols=195 Identities=11% Similarity=0.020 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH---
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVKE-----PD-----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPDS--- 465 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--- 465 (665)
.++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|++.|++..+... .++.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3456667777788888887777766542 21 35788889999999999999999999886311 1222
Q ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CC-CCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCC-h
Q 044628 466 -IAFLEVLSACSHGGLVSEGLRYFNLMISDY---HI-LPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI-----EPR-S 533 (665)
Q Consensus 466 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~ 533 (665)
.++..+...+...|++++|++.|++..+.. +. +....++..+...|.+.|++++|.+.+++. .+ .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 378888899999999999999999987621 22 223567889999999999999999999887 11 222 2
Q ss_pred hHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 534 DTLGAFIGACKVHGS---IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
..+..+...+...|+ .++|...+++. ...|.....+..++.+|...|++++|...+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234556677778888 77777777776 33344556788999999999999999999998865
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=122.52 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=148.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CchhHHHHHHHHHcCCChHHHHHHHHHHhhC------
Q 044628 296 LDVLVATSLVDMYAKNGNIDDACRVFDGMTA--------K---NVVSWNTMVVGFGQNGDGREAVKLLRDMLQG------ 358 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 358 (665)
.+..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3567789999999999999999999988754 1 2356788888999999999999999887653
Q ss_pred CCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------
Q 044628 359 SFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE----------- 427 (665)
Q Consensus 359 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------- 427 (665)
+-.|. ...++..+...|...|++++|...|++..+
T Consensus 105 ~~~~~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 105 KDHPA----------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp TTCHH----------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCChH----------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 11111 122233444445555555555555444321
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----
Q 044628 428 PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH------AVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDY----- 495 (665)
Q Consensus 428 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----- 495 (665)
.....|..+...|...|++++|++.|+++.+. +-.|+. .++..+...+...|++++|.++++.+.+..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345666777777778888888887777663 223322 356777777888888888888888776521
Q ss_pred -CCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 496 -HILPDS-------EHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 496 -~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
...+.. ..+..+...+...+.+.+|...++.. ...| +..+|..+..++...|++++|...+++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111211 12223333445566677777777776 3344 3667888899999999999999999999998775
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=3.5e-10 Score=106.54 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 044628 363 DEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGA 439 (665)
Q Consensus 363 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 439 (665)
|...+...-..+...|++++|...+...++....++...+..+...|.+.|++++|...|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 33445555555566666666666666666655434444444466666666666666666665442 234455666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPD-S-------IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD---SEHYTCLT 508 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 508 (665)
|...|++++|++.|++..+. .|+ . ..+..+...+...|++++|++.|+.+.+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 66666666666666666654 332 2 2344455555566666666666666654 2343 34455555
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 509 DLLGRVGLLVEAYDLLASM-PI-EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
.+|...|+. .++++ .+ ..+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 555444432 11221 00 11122222221 223445699999999999999999888887777653
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=3.2e-09 Score=108.18 Aligned_cols=195 Identities=11% Similarity=-0.067 Sum_probs=131.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHH
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVKE-------P----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR--P--DSI 466 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 466 (665)
...+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34556667777777777777765531 1 1234556777788888888888888887764221 1 124
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----hhH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT-----CLTDLLGRVGLLVEAYDLLASM-PIEPR-----SDT 535 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~ 535 (665)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|.+.+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566677778888999999998888765211111111222 2334477889999999999887 22221 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSK------PVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+..+...+...|+.++|...++++++..+.. ...+..++.+|...|++++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666778888899999999999887654321 236677888999999999999988877643
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=3.5e-10 Score=115.64 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----H
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKE-----P-----DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPD----S 465 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~ 465 (665)
++..+...|...|+++.|...+++..+ + ...+++.+...|...|++++|++.|++..+..- .++ .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445566666667776666666555431 1 134566777778888888888888877765210 111 1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-hhH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDY---HILPDSEHYTCLTDLLGRVGLLVEAYDLLASM----PI--EPR-SDT 535 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~ 535 (665)
.++..+...+...|++++|++.|++..... +.+....++..+..+|.+.|++++|.+.+++. .. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 356667777888888888888888776511 12223566777788888888888888888776 11 222 223
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 536 LGAFIGACKVHGS---IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 536 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
+..+...+...++ .++|...+++. ...|.....+..++.+|...|++++|...+++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444445556666 66666666652 22233345677888899999999999888877753
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=8.2e-09 Score=105.40 Aligned_cols=224 Identities=9% Similarity=0.030 Sum_probs=151.0
Q ss_pred HHHcCCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHhCCCCchHhHHHHHHHHHHhC--C---C-CchhHHHHHH
Q 044628 338 GFGQNGDGREAVKLLRDMLQGSF-CPD----EVTLASILSSCGSLSISCETRQVHAYAIKNG--V---Q-AFLSIENALI 406 (665)
Q Consensus 338 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~---~-~~~~~~~~li 406 (665)
.+...|++++|+..|++....-. .++ ..++..+-..+...|+++.|...+....+.. . . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455555555555555543210 111 1233344444555555555555555443321 0 1 1234566778
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC-HHHHHHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKE-----PD----LVTWTSIIGAYAFHGLSKESIEVFEKMLS-----HAVRPD-SIAFLEV 471 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~~t~~~l 471 (665)
..|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|++.|++..+ . .|+ ..++..+
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l 267 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVLFGL 267 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHHHHH
Confidence 888888888888888876542 22 34677888899999999999999999887 3 233 4578888
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-hhHHHHHHHHHH
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPD---SEHYTCLTDLLGRVGL---LVEAYDLLASMPIEPR-SDTLGAFIGACK 544 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~ 544 (665)
...+.+.|++++|.+++++..+...-..+ ...+..+...+...|+ +++|++.+++.+..|+ ...+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88999999999999999998874322222 3345666677778888 9999999999755454 345667778899
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 044628 545 VHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~ 563 (665)
..|+.++|...++++++..
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=8.2e-10 Score=107.36 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=156.3
Q ss_pred CCCCchHhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHH
Q 044628 375 GSLSISCETRQVHAYAIKN-------GVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----------PDLVTWTSI 436 (665)
Q Consensus 375 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 436 (665)
...|+++.|...+....+. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4678888888888876552 2233567788899999999999999999887652 234578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-Chhh
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSH------AVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDY-----HILP-DSEH 503 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 503 (665)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|.++|+++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11233 3578888889999999999999999987731 1122 3567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-hhHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCC
Q 044628 504 YTCLTDLLGRVGLLVEAYDLLASM-P---------IEPR-SDTLGAFIGACKVHGS------IGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 566 (665)
+..+..+|.+.|++++|++.++++ . ..+. ...|..+.......+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999999876 1 2333 3344444433333222 333344444444445666
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 567 PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 567 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
+..+..++.+|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998764
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=4.5e-09 Score=101.15 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCccCCc
Q 044628 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSKP---VNYALVSNVYASE----------RCWFDVARLRKMMRDNCDHKVPG 603 (665)
Q Consensus 537 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~ 603 (665)
..+...+...|+++.|+..++++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~------ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF------ 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC------
Confidence 5567788999999999999999999999854 5788999999977 99999999999987643
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh
Q 044628 604 CSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLMEEN 643 (665)
Q Consensus 604 ~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~ 643 (665)
..+|...+....+.++...+++.
T Consensus 226 -----------------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 -----------------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -----------------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23566677777777777766543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=6.2e-10 Score=122.11 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=143.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLS 473 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 473 (665)
+...++.|...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|++++|++.|++.++. .|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456788899999999999999999998763 56789999999999999999999999999985 665 468999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHH
Q 044628 474 ACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIG 550 (665)
Q Consensus 474 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 550 (665)
++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|+++ .+.|+ ...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 345 5788999999999999999999999998 66675 678999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 044628 551 LAKWAAEKLLELEPS 565 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~ 565 (665)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999876543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.4e-09 Score=105.06 Aligned_cols=201 Identities=10% Similarity=-0.006 Sum_probs=147.1
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhcCChHHH
Q 044628 379 ISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PD----LVTWTSIIGAYAFHGLSKES 449 (665)
Q Consensus 379 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 449 (665)
++++|...+... ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 3467888999999988876642 12 46888999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHH
Q 044628 450 IEVFEKMLSHAVR-PD----SIAFLEVLSACSHG-GLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 450 ~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 519 (665)
+..|++..+.... .+ ..++..+...|... |++++|++.|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988763111 11 24788888899996 9999999999998863211111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCChh--------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCCH
Q 044628 520 AYDLLASM-PIEPRSD--------TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN-----YALVSNVYA--SERCW 583 (665)
Q Consensus 520 A~~~~~~~-~~~p~~~--------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~ 583 (665)
|++.|++. ...|+.. .|..+..++...|+++.|+..++++++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 3333311 46677778889999999999999999999986543 344566665 45789
Q ss_pred HHHHHHHHHHh
Q 044628 584 FDVARLRKMMR 594 (665)
Q Consensus 584 ~~A~~~~~~m~ 594 (665)
++|...++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 99888886554
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.5e-08 Score=94.94 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHH
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVKE--PD----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI----AFLEV 471 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~l 471 (665)
+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|++.|+++.+. .|+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHH
Confidence 33445556666777777766666542 22 234555666666667777777777666664 23221 23233
Q ss_pred HHHHhc------------------CCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 044628 472 LSACSH------------------GGLVSEGLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDLLASMPIEPR 532 (665)
Q Consensus 472 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 532 (665)
..++.. .|+.++|+..|+.+.+. .|+. ..+.....+ +......
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH-----------
Confidence 333322 34445555555554441 1221 111111000 0000000
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP---VNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445667889999999999999999999975 56889999999999999999999999887654
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=4.8e-09 Score=102.85 Aligned_cols=242 Identities=9% Similarity=-0.049 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--C-CHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 044628 281 LGRQIHGLVIKQSFDLDVLVATSLVDMYAKN--G-NIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQ 357 (665)
Q Consensus 281 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 357 (665)
+|.+++.+..+.- ++....+ .|.+. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666652 3222222 12233 2 477887776554 6677788888888888877654
Q ss_pred CCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC--
Q 044628 358 GSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKE-----PD-- 429 (665)
Q Consensus 358 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-- 429 (665)
.... .|-.+ ...+++.+..+|.+.|++++|...|++..+ .+
T Consensus 66 ~~~~-------------------------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 66 YQKK-------------------------------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHH-------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHH-------------------------------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2100 00000 122344555556666666666655554432 11
Q ss_pred --hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh
Q 044628 430 --LVTWTSIIGAYAFH-GLSKESIEVFEKMLSHAVR-PD----SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501 (665)
Q Consensus 430 --~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 501 (665)
..+|+.+...|... |++++|++.|++..+.... .+ ..++..+...+...|++++|+..|+...+...-.+..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 34677888888886 9999999999988774111 11 2467788888999999999999999988732111121
Q ss_pred -----hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChh------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCC
Q 044628 502 -----EHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSD------TLGAFIGACK--VHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 502 -----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
..|..+..++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++.+++|...
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 14677788899999999999999988 5555422 2444555554 35678999999988888888654
Q ss_pred chH
Q 044628 568 VNY 570 (665)
Q Consensus 568 ~~~ 570 (665)
..+
T Consensus 275 ~~~ 277 (292)
T 1qqe_A 275 TIL 277 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.02 E-value=5.8e-08 Score=98.83 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044628 408 AYSKCGSIAGALQCFGSVKEPD-------LVTWTSIIGAYAFHGLSKESIEVFEKML 457 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 457 (665)
.+...|++++|...+++...++ ...+..+...+...|++++|...+++..
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566666666655554311 1123444445555555555555555543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=6e-09 Score=88.21 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSI 549 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 549 (665)
...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444331 1123334444445555555555555555544 1122 344566666666777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 550 GLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
++|...++++++..|.++..+..++.+|...|++++|...++++...
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777777777777766543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=6.2e-08 Score=93.19 Aligned_cols=174 Identities=14% Similarity=0.049 Sum_probs=99.7
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 418 ALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 418 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..++. ..+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444455443 234444455666666667777777777666554322222 3555566666677777777777776654
Q ss_pred hcCCCC-----ChhhHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 044628 494 DYHILP-----DSEHYTCLTDL--LGRVG--LLVEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLEL- 562 (665)
Q Consensus 494 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 562 (665)
..| +..+...|+.+ ....| ++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 23333444433 22223 677777777776 33344223333344666677777777777766654
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 563 ---------EPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 563 ---------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+|+++.++..++.+....|+ +|.+++.++...
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 667777776654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=2.8e-10 Score=99.14 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=99.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 044628 439 AYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 516 (665)
.+...|++++|++.+++.... .|+. ..+..+...|.+.|++++|++.|++..+ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 344556677777777666542 3332 3455666677777777777777777776 234 46677777788888888
Q ss_pred hHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 517 LVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWA-AEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 517 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
+++|+..|++. .+.|+ ...|..+...+...|+.++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888887777 55564 66788888888888887665554 588999999999999888888888875
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=5.6e-09 Score=100.48 Aligned_cols=186 Identities=16% Similarity=0.071 Sum_probs=139.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 044628 398 FLSIENALINAYSKCGSIAGALQCFGSVKE--P-D---LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV-RPD-SIAFL 469 (665)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 469 (665)
+...+-.+...+.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555667778889999999999998763 3 3 56788888899999999999999999998622 122 24566
Q ss_pred HHHHHHhc--------CCcHHHHHHHHHHHHHhcCCCCC-hhhH-----------------HHHHHHHHhcCChHHHHHH
Q 044628 470 EVLSACSH--------GGLVSEGLRYFNLMISDYHILPD-SEHY-----------------TCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 470 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 523 (665)
.+..++.. .|++++|+..|+.+.+.+ |+ .... ..+...|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67777777 899999999999998742 43 2333 4568889999999999999
Q ss_pred HHhC-CCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCHHH
Q 044628 524 LASM-PIEPR----SDTLGAFIGACKVH----------GSIGLAKWAAEKLLELEPSKPV---NYALVSNVYASERCWFD 585 (665)
Q Consensus 524 ~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~ 585 (665)
|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++. ++..+..++.+.|++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 9988 33343 34666777777765 8999999999999999999853 44566666666665554
Q ss_pred H
Q 044628 586 V 586 (665)
Q Consensus 586 A 586 (665)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 3
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.4e-09 Score=119.85 Aligned_cols=143 Identities=9% Similarity=-0.066 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLT 508 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 508 (665)
..|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|++.|+++.+ +.| +...|..+.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg 508 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALA 508 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHH
Confidence 34444444444444444444444444442 22 223344444444444444444444444443 122 233444444
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 509 DLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
.+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 44444444444 4444444 2223 233444444444444444444444444444444444444444444433
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.6e-08 Score=85.47 Aligned_cols=131 Identities=21% Similarity=0.253 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLL 511 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 511 (665)
.|..+...+...|++++|.++|+++.+.+ ..+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777778888888888888888887753 234566777777888888888888888888762 234566777888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 512 GRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 512 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888877 3333 4667888888888999999999999999888886
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.3e-08 Score=99.43 Aligned_cols=174 Identities=6% Similarity=-0.137 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 044628 416 AGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISD 494 (665)
Q Consensus 416 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 494 (665)
+.....+......+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|.+.++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 34444455544455667777888899999999999999999986 564 46788888999999999999999999876
Q ss_pred cCCCCChhhHHHHH-HHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cch
Q 044628 495 YHILPDSEHYTCLT-DLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK--PVN 569 (665)
Q Consensus 495 ~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 569 (665)
..|+........ ..+.+.|+.++|++.+++. ...| +...+..+...+...|+.++|+..++++++.+|++ ..+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 356654333333 3367788889999998887 4455 47788899999999999999999999999999997 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 570 YALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 570 ~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998877653
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=2.3e-08 Score=96.98 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 044628 400 SIENALINAYSKCGSIAGALQCFGSVKE-----------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH------AVR 462 (665)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 462 (665)
.++..+...|...|++++|...|++..+ .....|..+...|...|++++|++.|+++.+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445556666666666666666655431 12346777777888888888888888887764 113
Q ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc------CCCCC-hhhHHHHHHHHHhc------CChHHHHHHHHhCC
Q 044628 463 PD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDY------HILPD-SEHYTCLTDLLGRV------GLLVEAYDLLASMP 528 (665)
Q Consensus 463 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~ 528 (665)
|+ ..++..+...+...|++++|.++++.+.+.. ...+. ...|..+...+... ..+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 3467778888888899999999888887521 11222 33344444444332 33455555555553
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044628 529 -IEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELE 563 (665)
Q Consensus 529 -~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 563 (665)
..|+ ..++..+...+...|++++|...++++++..
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3343 5567888899999999999999999998753
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.3e-09 Score=95.02 Aligned_cols=122 Identities=8% Similarity=-0.072 Sum_probs=102.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHG 547 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 547 (665)
|...+...|++++|++.++.... ..| +...+..+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556778899999999998865 334 3556778899999999999999999998 5666 5778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHH-HHHHhh
Q 044628 548 SIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARL-RKMMRD 595 (665)
Q Consensus 548 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~ 595 (665)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987776 476654
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.3e-07 Score=90.84 Aligned_cols=240 Identities=10% Similarity=0.021 Sum_probs=163.4
Q ss_pred HHhcCCHHHHHHHHhccCCCCc-hhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHH
Q 044628 308 YAKNGNIDDACRVFDGMTAKNV-VSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQV 386 (665)
Q Consensus 308 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 386 (665)
..-.|.+..++.-...+...+. ..-.-+.++|...|++... ..-.|....+..+...+. .+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HHHH
Confidence 3456777777775555543222 2223345777777776531 122344434443333332 22 4555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044628 387 HAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-----PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV 461 (665)
Q Consensus 387 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 461 (665)
++...+.+ .++......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 55555444 33444445788899999999999999998743 35567788899999999999999999999885
Q ss_pred CC-----CHHHHHHHHHH--Hh--cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 044628 462 RP-----DSIAFLEVLSA--CS--HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI-- 529 (665)
Q Consensus 462 ~p-----~~~t~~~ll~a--~~--~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 529 (665)
.| +..+...+..+ .. ..++..+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 67 35666666655 22 234899999999999763 355334444555899999999999999865 21
Q ss_pred --------CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 530 --------EP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 530 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
.| |+.+...++......|+ .|.++++++.+..|+++.+
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 25 46666677767777787 8899999999999998654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=8.1e-09 Score=92.63 Aligned_cols=155 Identities=8% Similarity=-0.039 Sum_probs=97.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HH
Q 044628 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL-LG 512 (665)
Q Consensus 435 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 512 (665)
.+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|+.+.. ..|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 3444455555555555555555443 332 23455555555556666666666655544 12322222221111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCHHHHHH
Q 044628 513 RVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK--PVNYALVSNVYASERCWFDVAR 588 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~ 588 (665)
+.+...+|++.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222233456666665 4455 46778888888999999999999999999999875 5588899999999999999999
Q ss_pred HHHHHh
Q 044628 589 LRKMMR 594 (665)
Q Consensus 589 ~~~~m~ 594 (665)
.+++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1e-07 Score=88.35 Aligned_cols=172 Identities=8% Similarity=-0.119 Sum_probs=136.4
Q ss_pred HHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----cHHHHHHHHHHHH
Q 044628 418 ALQCFGSVK-EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG----LVSEGLRYFNLMI 492 (665)
Q Consensus 418 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 492 (665)
|.+.|++.. ..+...+..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 3567778888888888899999999999988865 55666677777777 6 8999999999987
Q ss_pred HhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 044628 493 SDYHILPDSEHYTCLTDLLGR----VGLLVEAYDLLASM-PIEPR---SDTLGAFIGACKV----HGSIGLAKWAAEKLL 560 (665)
Q Consensus 493 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 560 (665)
+ .-+...+..|..+|.. .+++++|+++|++. ...|. ...+..|...+.. .++.++|+..++++.
T Consensus 81 ~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2356777888888877 88999999999988 44443 6778888888887 789999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 044628 561 ELEPSKPVNYALVSNVYASE-R-----CWFDVARLRKMMRDNCD 598 (665)
Q Consensus 561 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 598 (665)
+. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66678999999999865 3 89999999999887663
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.87 E-value=1e-08 Score=88.82 Aligned_cols=101 Identities=7% Similarity=-0.058 Sum_probs=89.1
Q ss_pred CCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 497 ILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 497 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
+.| +...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 3557778888899999999999999988 5556 577899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 574 SNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 574 ~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+.+|...|++++|...+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987654
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=5.9e-08 Score=95.75 Aligned_cols=220 Identities=13% Similarity=-0.037 Sum_probs=150.0
Q ss_pred CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044628 342 NGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQC 421 (665)
Q Consensus 342 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 421 (665)
.|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4566777777776654211 10 011145666666665543 3466777888888777
Q ss_pred HhcCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcCCcHHHHHHH
Q 044628 422 FGSVKE-----PD----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAV---RPD--SIAFLEVLSACSHGGLVSEGLRY 487 (665)
Q Consensus 422 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 487 (665)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776542 11 34778888899999999999999998776311 122 2467778888888 999999999
Q ss_pred HHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 044628 488 FNLMISDYHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM-PI---EPR----SDTLGAFIGACKVHGSIGLAKWA 555 (665)
Q Consensus 488 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 555 (665)
|++....+.-..+ ..++..+..+|.+.|++++|++.|++. .+ .++ ...+..+...+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 467888899999999999999999987 21 111 22556666677788999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhcCCHHHHHHH
Q 044628 556 AEKLLELEPSKPVN-----YALVSNVYASERCWFDVARL 589 (665)
Q Consensus 556 ~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~A~~~ 589 (665)
+++++ ++|..... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99975433 33455555 56777666654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=3.2e-08 Score=107.06 Aligned_cols=159 Identities=11% Similarity=0.030 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHH
Q 044628 412 CGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRY 487 (665)
Q Consensus 412 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 487 (665)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998874 45788999999999999999999999999985 55 456888899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 044628 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVH---GSIGLAKWAAEKLLEL 562 (665)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 562 (665)
|++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2335788999999999999999999999998 4455 467888888999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 044628 563 EPSKPVNYALVS 574 (665)
Q Consensus 563 ~p~~~~~~~~l~ 574 (665)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=6.1e-08 Score=89.54 Aligned_cols=153 Identities=11% Similarity=0.027 Sum_probs=112.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C-ChhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKE--P-DLVTWTS----------------IIGAYAFHGLSKESIEVFEKMLSHAVRP-DSI 466 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 466 (665)
..+.+.|++++|...|++..+ | +...|.. +...|...|++++|+..|++..+. .| +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH
Confidence 345566666666666666543 2 2334444 888899999999999999999986 55 456
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCC--hHHHHHHHHhCCCCCC--hhHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGL--LVEAYDLLASMPIEPR--SDTLGAFIG 541 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~--~~~~~~ll~ 541 (665)
.+..+..++...|++++|++.|+++.+ +.| +...|..+..+|...|. .+++...++.. ..|+ ...|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-SSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCCCchhHHHHHHHH
Confidence 788888999999999999999999987 345 57788888888876654 44566667666 2333 334455556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 542 ACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
++...|++++|+..+++++++.|+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 677789999999999999999997
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.6e-08 Score=83.59 Aligned_cols=108 Identities=14% Similarity=0.029 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
.+......+.+.|++++|++.|++.++. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555566666666666666666666651 2234556666666666666666666666665 3344 3556666666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
..|++++|+..++++++++|+++.++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666665544
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=8.6e-08 Score=105.60 Aligned_cols=191 Identities=16% Similarity=0.058 Sum_probs=148.5
Q ss_pred CCCCchHhHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcC
Q 044628 375 GSLSISCETRQVHAYAIK-------NGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHG 444 (665)
Q Consensus 375 ~~~~~~~~a~~i~~~~~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 444 (665)
...|++++|.+.++.+.+ ...+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667777777777777761 12244566778888999999999999999998873 57789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHH
Q 044628 445 LSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYD 522 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 522 (665)
++++|++.|++..+. .| +...+..+..++...|++++ ++.|+++.+ +.| +...|..+..+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999986 56 45778889999999999999 999999987 344 57789999999999999999999
Q ss_pred HHHhC-CCCCC-hhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCchHH
Q 044628 523 LLASM-PIEPR-SDTLGAFIGACKVHGS-----IGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 523 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
.|+++ ...|+ ...|..+..++...++ .+...++.+.+.++.++++....
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 99999 67786 5567777777655554 34555555555566665555443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=7e-08 Score=104.32 Aligned_cols=145 Identities=8% Similarity=-0.091 Sum_probs=81.9
Q ss_pred CchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 044628 378 SISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFE 454 (665)
Q Consensus 378 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 454 (665)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 23455666666677777777777777766542 345566666677777777777777777
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHhC
Q 044628 455 KMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV---GLLVEAYDLLASM 527 (665)
Q Consensus 455 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 527 (665)
+..+. .| +...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 76664 33 3456666666677777777777777776652 122455666666677666 7777777776666
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=2.8e-08 Score=86.12 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888889999999999999887 4455 5778888888999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 044628 578 ASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m~~~ 596 (665)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=4.1e-08 Score=96.92 Aligned_cols=196 Identities=11% Similarity=-0.045 Sum_probs=149.3
Q ss_pred CCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 044628 377 LSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKM 456 (665)
Q Consensus 377 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 456 (665)
.|++++|.++++...+.... . .+...+++++|...|.+ ....|...|++++|.+.|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56788888888877654221 0 12115788888887765 366788999999999999988
Q ss_pred HHcCC---CCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC--C--ChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 457 LSHAV---RPD--SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHIL--P--DSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 457 ~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
.+... .+. ..+|..+...|...|++++|++.|++..+.+.-. + ...++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76321 111 2478888889999999999999999887632111 1 14578888899988 9999999999887
Q ss_pred -CCCC---C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 528 -PIEP---R----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP------VNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 528 -~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
.+.| + ..++..+...+...|++++|+..+++++++.|++. ..+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2111 1 45678888999999999999999999999876643 26677888999999999999999988
Q ss_pred h
Q 044628 594 R 594 (665)
Q Consensus 594 ~ 594 (665)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=4.2e-08 Score=82.27 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=89.9
Q ss_pred CCCC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 497 ILPD-SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 497 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 456778899999999999999999998 5556 577899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 044628 574 SNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 574 ~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=2.1e-07 Score=87.10 Aligned_cols=184 Identities=11% Similarity=-0.039 Sum_probs=131.6
Q ss_pred HHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHH
Q 044628 365 VTLASILSSCGSLSISCETRQVHAYAIKNGVQA--FLSIENALINAYSKCGSIAGALQCFGSVKE--PDL----VTWTSI 436 (665)
Q Consensus 365 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l 436 (665)
..+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455566788899999999999998865332 235677889999999999999999998763 332 145555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 044628 437 IGAYAF------------------HGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHI 497 (665)
Q Consensus 437 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 497 (665)
..++.. .|+.++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~----- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH-----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH-----
Confidence 555554 57899999999999985 56543 2211110 001111111
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 498 LPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 498 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++...|+.++|+..++++....|++..+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999988 33444 2467888899999999999999999999999987654
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.4e-07 Score=87.36 Aligned_cols=127 Identities=11% Similarity=-0.112 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 044628 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512 (665)
Q Consensus 433 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 512 (665)
+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|++.|+...+. .+.+...|..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 344445555556666666555544 2445555555555555555555555555555541 1223444555555555
Q ss_pred hcCChHHHHHHHHhC-CCCCC-----------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 513 RVGLLVEAYDLLASM-PIEPR-----------------SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
+.|++++|++.+++. ...|+ ...|..+..++...|++++|...+++++++.|+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 555555555555544 11111 134444444555555555555555555555543
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.73 E-value=7.8e-08 Score=88.79 Aligned_cols=160 Identities=7% Similarity=-0.026 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHHhcCCcHHHHHHHHHHHHHh
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-IAFLE----------------VLSACSHGGLVSEGLRYFNLMISD 494 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~ 494 (665)
.+-.....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|+..|+...+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ- 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 3444556778999999999999999985 5654 45666 78889999999999999999987
Q ss_pred cCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCch
Q 044628 495 YHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGS--IGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 495 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~ 569 (665)
+.| +...+..+..+|...|++++|++.|++. .+.|+ ...|..+...+...|+ .+.+...++++....|. ...
T Consensus 83 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a 159 (208)
T 3urz_A 83 --KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYA 159 (208)
T ss_dssp --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHH
T ss_pred --HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHH
Confidence 345 6788999999999999999999999998 55664 6678888877765543 45566666666544433 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 570 YALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 570 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+..++..+...|++++|...+++..+..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5677888999999999999999987654
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.7e-06 Score=84.51 Aligned_cols=161 Identities=9% Similarity=-0.055 Sum_probs=121.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHH
Q 044628 435 SIIGAYAFHGLSKESIEVFEKMLSHAV-RPDSI----AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYT 505 (665)
Q Consensus 435 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 505 (665)
..+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|++.|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887421 22221 2334666777888999999999999872222223 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-----C--CC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 044628 506 CLTDLLGRVGLLVEAYDLLASM-----P--IE-PR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK------PVNY 570 (665)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~-----~--~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 570 (665)
.+...|...|++++|++.++++ . .. +. ..++..+...|...|++++|+..+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999998887 1 11 12 3467888899999999999999999999865443 5678
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHhh
Q 044628 571 ALVSNVYASERC-WFDVARLRKMMRD 595 (665)
Q Consensus 571 ~~l~~~y~~~g~-~~~A~~~~~~m~~ 595 (665)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887753
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=1.4e-06 Score=84.67 Aligned_cols=179 Identities=12% Similarity=0.145 Sum_probs=92.7
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH-
Q 044628 414 SIAGALQCFGSVK---EPDLVTWTSIIGAY----AFH---GLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS- 482 (665)
Q Consensus 414 ~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 482 (665)
+++++++.++.+. ..+...|+.-...+ ... +++++++++++++.+.. .-|..++..-.-.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 4555555555443 13444444433333 333 45566666666666542 223345544444444555555
Q ss_pred -HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCC-HHHH
Q 044628 483 -EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL------LVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGS-IGLA 552 (665)
Q Consensus 483 -~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-~~~a 552 (665)
+++++++.+.+. -.-|-..|+.-..++.+.|+ ++++++.++++ ...| |...|+-+...+...|+ .+..
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 566666666552 12244445444444544444 56666665555 3333 45556655555555554 3334
Q ss_pred HHHHHHHHhcC---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 553 KWAAEKLLELE---PSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 553 ~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
...++++++++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44555555554 55556666666666666666666666666653
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=1.2e-07 Score=92.53 Aligned_cols=132 Identities=8% Similarity=-0.080 Sum_probs=112.1
Q ss_pred CCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHHHH
Q 044628 463 PDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLGAF 539 (665)
Q Consensus 463 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 539 (665)
|+. ..+..+...+...|++++|.+.|+++.+ ..| +...+..+..+|.+.|++++|.+.++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 5677778889999999999999999987 345 5778899999999999999999999999 556765544433
Q ss_pred H-HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 540 I-GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 540 l-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
. ..+...++.+.|+..++++++.+|+++.++..++.+|...|++++|...++++....
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 336677888889999999999999999999999999999999999999999998654
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=8.1e-07 Score=82.06 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcH
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLV 481 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 481 (665)
+..+...+.+.|++++|...|++..+++...|..+...|...|++++|++.|++..+.. ..+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34566788899999999999999998899999999999999999999999999999863 33556888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh
Q 044628 482 SEGLRYFNLMISDYHILPDS----------------EHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRS 533 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 533 (665)
++|++.|+...+. .+.+. ..+..+..+|.+.|++++|.+.++++ ...|+.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999872 22222 67889999999999999999999998 666764
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=9e-06 Score=85.36 Aligned_cols=201 Identities=9% Similarity=-0.037 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhcC
Q 044628 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGA-LQCFGSV 425 (665)
Q Consensus 347 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 425 (665)
.+..+|+++.... +-+...|...+.-+.+.|+.+.|..++...++. +.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 4556777766542 233445555555556677777888888777776 33333332 22222111111 1111111
Q ss_pred C------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhcCCcHHHHHHHHHHH
Q 044628 426 K------------EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLE--VLSACSHGGLVSEGLRYFNLM 491 (665)
Q Consensus 426 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~ 491 (665)
. ......|-..+..+.+.++.+.|..+|++. +.. ..+...|.. .+... ..++.+.|..+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHH
Confidence 0 011234666666666667777888888777 321 123333322 22221 123577788888877
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 492 ISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 492 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
.+.++ -+...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++.++
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 76432 234455666777777788888888888762 2456677777766777777777777776653
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=1.5e-07 Score=84.16 Aligned_cols=155 Identities=13% Similarity=0.028 Sum_probs=119.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 044628 402 ENALINAYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSA-CSH 477 (665)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 477 (665)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34566778889999999999999884 56778999999999999999999999998765 3444332222111 122
Q ss_pred CCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hhHHHHHHHHHHhcCCHHHH
Q 044628 478 GGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR---SDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 552 (665)
.+...+|++.++...+ ..| +...+..+..++.+.|++++|++.++++ ...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223357888888876 345 5788899999999999999999999988 55654 55888899999999999999
Q ss_pred HHHHHHHHh
Q 044628 553 KWAAEKLLE 561 (665)
Q Consensus 553 ~~~~~~~~~ 561 (665)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=5e-07 Score=88.39 Aligned_cols=163 Identities=9% Similarity=-0.079 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hh
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-----IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SE 502 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 502 (665)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|++.++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788889999999999888775322111 12334555677888999999999988752111111 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CC
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM----PIEPR-----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS------KP 567 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 567 (665)
.|+.+...|...|++++|++.++++ ...|+ ..++..+...|...|++++|...+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999998876 11222 257888889999999999999999999876532 14
Q ss_pred chHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 044628 568 VNYALVSNVYASERCWFDV-ARLRKMMR 594 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 594 (665)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77677664
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=3.3e-07 Score=80.74 Aligned_cols=127 Identities=8% Similarity=-0.023 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
.+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|++.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3555556666777777777777777662 2335667777778888888888888888776 3334 4667888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHhcCCHHHHHHHHHHHhh
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALV--SNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
..|++++|...++++++++|++...+..+ +..+...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988877544 4448889999999999877653
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=3.6e-07 Score=75.78 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGAC 543 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 543 (665)
..+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|+..++++ ...| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666777777777777776652 2234566677777777777888877777776 2233 466778888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASER 581 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 581 (665)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88999999999999999999998888888888877654
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=8.5e-08 Score=93.17 Aligned_cols=190 Identities=10% Similarity=-0.045 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSA 474 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 474 (665)
...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455667788889999999999998775 247788899999999999999999999999875 554 4678888889
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDS-EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAK 553 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 553 (665)
+...|++++|+..|+...+. .|+. ..+...+....+.++...... .......++...... +..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-l~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSY-LTRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHH-HHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH-HHHHH-HHHHHHHH
Confidence 99999999999999988762 2321 112122222222222122222 222233334444333 33333 68999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 044628 554 WAAEKLLELEPSKPVNYALVSNVYASE-RCWFDVARLRKMMRDN 596 (665)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 596 (665)
+.++++++++|++......+..++.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999877777888888877 7899999999988754
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=3.1e-07 Score=78.79 Aligned_cols=96 Identities=8% Similarity=-0.123 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888889999999888887 4445 57778888888999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 044628 579 SERCWFDVARLRKMMRDN 596 (665)
Q Consensus 579 ~~g~~~~A~~~~~~m~~~ 596 (665)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888754
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=1.5e-07 Score=94.06 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
...|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357788888899999999999998888 4455 57788889999999999999999999999999999999999999999
Q ss_pred hcCCHHHH-HHHHHHHh
Q 044628 579 SERCWFDV-ARLRKMMR 594 (665)
Q Consensus 579 ~~g~~~~A-~~~~~~m~ 594 (665)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566653
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=3.3e-07 Score=77.16 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGAC 543 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 543 (665)
..+..+...+...|++++|.+.|+...+. .+.+...+..+..++...|++++|++.++++ ...| +...|..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555555556666666666666665541 2224555666666666666666666666665 2233 456777777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERC 582 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 582 (665)
...|++++|+..++++++.+|.+...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888999999999888888888888888888877664
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=3.2e-07 Score=76.86 Aligned_cols=116 Identities=13% Similarity=-0.011 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGAC 543 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 543 (665)
..+..+...+...|++++|.+.|+..... .+.+...+..+...+...|++++|++.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777662 2335667777777888888888888887776 3334 466788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCW 583 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 583 (665)
...|++++|...++++++..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999989999999999888875
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=1.5e-07 Score=84.25 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=81.1
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHH-HHhcCCH--H
Q 044628 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGA-CKVHGSI--G 550 (665)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 550 (665)
...|++++|+..++...+. .+.+...|..+...|...|++++|++.++++ ...| +...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456667777777766652 2234566777777777777777777777766 3333 45566666666 6677777 8
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 551 LAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 551 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
+|+..++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888877788888888888888888888887776543
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=3.8e-05 Score=80.60 Aligned_cols=335 Identities=8% Similarity=0.004 Sum_probs=167.3
Q ss_pred CChHHHHHHHcccC--CCCcccHHHHHHHHHhCCCC-c--hHHHHHhhhC-CCCC-CcchHHHHHHHHhc----CCChHH
Q 044628 112 KAFDDMEKLFDEMR--VRNIVTWNTLISGIINCGGN-V--TPYFRRMLLD-NVRL-DHITFNSLLRACVQ----ADDIEV 180 (665)
Q Consensus 112 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~~~-~--~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~----~~~~~~ 180 (665)
|.++.++.+|++-. .|++..|..-+....+.+.. + ..+|+..... |..| +...|...+.-+.. .++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 45555555555433 24555555555555444422 1 4455544332 4323 33444444444332 345667
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHH-------------hCCChHHHHHHHhccC----CCCchhHHHHHHHHHhcCC
Q 044628 181 GRRLHSFILKVGFGLNCFVSSALVDLYG-------------KCGFVEDARRVFDEVL----CRDLVLWNVMVSCYALNCL 243 (665)
Q Consensus 181 a~~~~~~~~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 243 (665)
+..+|+.+++.....-...|......-. ..+.+..|+.+++.+. ..+...|...+.--..++.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 7777777776321111122222111100 0012223333333221 1133456555544322211
Q ss_pred -------chHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044628 244 -------GDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDD 316 (665)
Q Consensus 244 -------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 316 (665)
.+.+..+|+++.... +-+...|...+.-+...|+.+.|..+++.+++. +.+...+.. |+...+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH
Confidence 233566777776642 334566666666677788888888888888887 444444332 222111111
Q ss_pred H-HHHHhccC------------CCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHhCCCCchH
Q 044628 317 A-CRVFDGMT------------AKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLA--SILSSCGSLSISC 381 (665)
Q Consensus 317 A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~ 381 (665)
. ..+.+... ......|-..+....+.++.+.|..+|.+....+ .+...|. +.+.... .++.+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~ 337 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRA 337 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChH
Confidence 1 11111110 0011345555665556677788888887772211 2333332 2222211 22577
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044628 382 ETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLS 458 (665)
Q Consensus 382 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 458 (665)
.|+.+++...+.. +.+...+...++...+.|+.+.|+.+|+++. .....|...+.--..+|+.+.+.++++++..
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776653 2233445556676777777777777777774 3456677666666666777777776666654
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=2.9e-05 Score=75.33 Aligned_cols=160 Identities=9% Similarity=0.065 Sum_probs=126.9
Q ss_pred CCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc------H
Q 044628 413 GSIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGLSK--ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL------V 481 (665)
Q Consensus 413 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 481 (665)
++++++.++++++. .+|...|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 78889999988876 378888988888888889888 9999999999874 3356677766666666666 8
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCChhHHHHHHHHHHhcCCHHHHHHH
Q 044628 482 SEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE-AYDLLASM-PI----EPRSDTLGAFIGACKVHGSIGLAKWA 555 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 555 (665)
+++++.++.++.. .+-|...|+-+..++.+.|+..+ +.++.++. .. ..+...+..+...+...|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999872 34477888888889999988555 55677776 22 23567888888999999999999999
Q ss_pred HHHHHh-cCCCCCchHHHHHH
Q 044628 556 AEKLLE-LEPSKPVNYALVSN 575 (665)
Q Consensus 556 ~~~~~~-~~p~~~~~~~~l~~ 575 (665)
++.+.+ .+|.....|...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999996 89988777765543
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=2.1e-07 Score=77.35 Aligned_cols=96 Identities=16% Similarity=-0.013 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
..+..+...+.+.|++++|+..+++. ...| +...|..+..++...|+.++|+..++++++++|+++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778889999999999999988 4556 577888888999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 044628 580 ERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 580 ~g~~~~A~~~~~~m~~~~ 597 (665)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887654
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=4.8e-06 Score=76.87 Aligned_cols=173 Identities=7% Similarity=-0.135 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 044628 383 TRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTWTSIIGAYAFHG----LSKESIEVFEKML 457 (665)
Q Consensus 383 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 457 (665)
|.+.+....+.| +...+..|..+|...+++++|...|++..+ .+...+..|...|.. + +.++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 455667778888889999999999988764 567788888888877 6 8999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh----cCChHHHHHHHHh
Q 044628 458 SHAVRPDSIAFLEVLSACSH----GGLVSEGLRYFNLMISDYHILPD---SEHYTCLTDLLGR----VGLLVEAYDLLAS 526 (665)
Q Consensus 458 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 526 (665)
+.| +...+..+...+.. .+++++|+++|+...+ ..|. ...+..|..+|.. .+++++|++.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55677777777777 7899999999999876 2343 6788888999988 8899999999999
Q ss_pred C-CCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 044628 527 M-PIEPRSDTLGAFIGACKVH-G-----SIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 527 ~-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 565 (665)
. ...++...+..|...|... | +.++|+..++++.+....
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8 3334566677777776543 3 899999999999988654
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6.6e-07 Score=74.82 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
...|..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777888888888888888887 4445 46788888888999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 044628 579 SERCWFDVARLRKMMRDN 596 (665)
Q Consensus 579 ~~g~~~~A~~~~~~m~~~ 596 (665)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888754
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=6.8e-07 Score=72.52 Aligned_cols=99 Identities=12% Similarity=-0.029 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS--KPVNYALVSN 575 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 575 (665)
+...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556777788888888888888888877 3334 5667888888899999999999999999999999 8899999999
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCC
Q 044628 576 VYASE-RCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 576 ~y~~~-g~~~~A~~~~~~m~~~~~ 598 (665)
+|... |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876554
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=2e-05 Score=76.91 Aligned_cols=158 Identities=9% Similarity=-0.064 Sum_probs=119.7
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----HHHHH
Q 044628 405 LINAYSKCGSIAGALQCFGSVKE-----PD----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-PDS----IAFLE 470 (665)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 470 (665)
.+..+...|++++|...+++..+ ++ ...+..+...+...|++++|++.|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778899999999999988653 11 112334666677778999999999999984322 232 26888
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hhHHH
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYH----ILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-------PIEPR-SDTLG 537 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 537 (665)
+...|...|++++|+++|+.+.+... ..+ ....|..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999885221 111 1347888999999999999999999877 12222 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 044628 538 AFIGACKVHG-SIGLAKWAAEKLLEL 562 (665)
Q Consensus 538 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 562 (665)
.+..++...| +.++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 569999999998754
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=3.1e-07 Score=79.41 Aligned_cols=108 Identities=12% Similarity=-0.026 Sum_probs=83.9
Q ss_pred CCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHH
Q 044628 462 RPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGA 538 (665)
Q Consensus 462 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 538 (665)
.|+. ..+..+...+...|++++|+..|+..... -+.+...|..+..+|.+.|++++|++.|+++ .+.| +...|..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4533 45666677788888888888888888762 2336777888888888889999998888887 4445 4667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
+..++...|++++|+..+++++++.|+++....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 888899999999999999999999998776543
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=1.2e-06 Score=75.79 Aligned_cols=103 Identities=12% Similarity=-0.013 Sum_probs=88.5
Q ss_pred CCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHH
Q 044628 461 VRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTL 536 (665)
Q Consensus 461 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 536 (665)
+.|+. ..+..+...+.+.|++++|+..|+.+.. +.| +...|..+..+|.+.|++++|++.|+++ .+.|+ ...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 35544 4677788889999999999999999987 345 6888999999999999999999999998 55564 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 537 GAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 537 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 899999999999999999999999999985
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=5.4e-07 Score=75.53 Aligned_cols=94 Identities=7% Similarity=-0.079 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV-------NYAL 572 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 572 (665)
..+..+...+.+.|++++|++.|+++ .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999999887 5556 4678888999999999999999999999999987654 6778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 044628 573 VSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 573 l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
++.+|...|++++|.+.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999988764
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=1.4e-06 Score=73.86 Aligned_cols=99 Identities=9% Similarity=-0.095 Sum_probs=83.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 499 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
.+...|..+...+...|++++|++.|++. ...| +...|..+...+...|+++.|+..++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677778888888888888888888877 3344 467788888888999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 044628 577 YASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~~~ 597 (665)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998887543
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=1.1e-06 Score=83.40 Aligned_cols=182 Identities=9% Similarity=-0.055 Sum_probs=117.7
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---------------
Q 044628 411 KCGSIAGALQCFGSVKE---PDLVTWTSI-------IGAYAFHGLSKESIEVFEKMLSHAVRPDS--------------- 465 (665)
Q Consensus 411 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 465 (665)
..++.+.|.+.|.++.+ .....|+.+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777653 344567666 4555555555555555554443 22222
Q ss_pred -------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----h
Q 044628 466 -------IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS----D 534 (665)
Q Consensus 466 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 534 (665)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223345566777888888888877764 2354335555666778888888888888776333322 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLELE--PS-KPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56666777888888888888888887433 44 34567778888888888888888888887543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=1.4e-06 Score=77.82 Aligned_cols=129 Identities=9% Similarity=0.070 Sum_probs=99.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--
Q 044628 441 AFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL-LGRVGLL-- 517 (665)
Q Consensus 441 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 517 (665)
...|++++|++.+++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998888752 335567888888899999999999999998873 23356777888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 044628 518 VEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572 (665)
Q Consensus 518 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 572 (665)
++|++.++++ ...| +...|..+...+...|++++|+..++++++++|+++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999999888 4445 46778888889999999999999999999999998665433
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=5.3e-06 Score=81.00 Aligned_cols=162 Identities=9% Similarity=-0.090 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKE---PDL------VTWTSIIGAYAFHGLSKESIEVFEKMLSHAV---RPD--SI 466 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 466 (665)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|++.+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334567788899999999988875431 111 2234455667788899999999999886421 122 24
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------h
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD-----SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-------S 533 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~ 533 (665)
++..+...|...|++++|.++|+++.+.....|+ ...|..+...|.+.|++++|++.+++. .+.++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999998742222233 257888999999999999999999887 11111 5
Q ss_pred hHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 044628 534 DTLGAFIGACKVHGSIGLA-KWAAEKLLEL 562 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 562 (665)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7778888753
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=1.1e-06 Score=77.48 Aligned_cols=107 Identities=14% Similarity=-0.058 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGAC 543 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 543 (665)
..+..+...+...|++++|++.|+...+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666666777777777777777777662 2225666677777777777777777777766 3344 355666666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 044628 544 KVHGSIGLAKWAAEKLLELEPSKPVNYALVS 574 (665)
Q Consensus 544 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 574 (665)
...|++++|+..++++++++|+++..+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 7777777777777777777777766554443
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=3.8e-06 Score=76.62 Aligned_cols=129 Identities=12% Similarity=0.023 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-C----h
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDY---HILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PI---EP-R----S 533 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~----~ 533 (665)
++..+...+...|++++|...+++..... +..| ....+..+...|...|++++|++.+++. .. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44444444555555555555555444311 1111 1334555555666666666666665554 10 11 1 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----CchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 534 DTLGAFIGACKVHGSIGLAKWAAEKLLELEPS--K----PVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 534 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
..+..+...+...|++++|+..+++++++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34555666677777777777777777654321 1 12346778888888888888888776654
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=1.9e-06 Score=70.49 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555566666666655555 2223 344555555556666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHhh
Q 044628 580 ERCWFDVARLRKMMRD 595 (665)
Q Consensus 580 ~g~~~~A~~~~~~m~~ 595 (665)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6666666666665554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=3e-06 Score=69.24 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
.+..+...+...|++++|.+.|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455556666677777777777776652 2235666677777777777777777777776 3334 4667777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998877777776654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=1.6e-06 Score=79.11 Aligned_cols=169 Identities=11% Similarity=-0.062 Sum_probs=102.0
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHH
Q 044628 408 AYSKCGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEG 484 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 484 (665)
.....|++++|.+.|+.-.+ .....|..+...+...|++++|++.|++..+. .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 44445566666655554332 23445666666777777777777777777763 2221100000 00000
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044628 485 LRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLEL 562 (665)
Q Consensus 485 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 562 (665)
. .. .....|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01356777788888888888888888877 4444 4677888889999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCHHHHH-HHHHHHhhCC
Q 044628 563 EPSKPVNYALVSNVYASERCWFDVA-RLRKMMRDNC 597 (665)
Q Consensus 563 ~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~~ 597 (665)
+|+++.++..++.++...|+.+++. ..++.+-..+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998888877 5555555443
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=1.7e-06 Score=72.72 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=88.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 499 PDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 499 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
.+...|..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++.+|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667888999999999999999999998 5556 577888888999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 044628 577 YASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~~ 596 (665)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=1.1e-06 Score=75.25 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
.+..+...+...|++++|+..|+.+... -+.+...|..+..+|.+.|++++|++.|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555566677778888888888777762 2235667777778888888888888888877 3444 4566777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
..|++++|+..+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 89999999999999999988877665554433
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.5e-06 Score=73.27 Aligned_cols=95 Identities=9% Similarity=-0.121 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
...+..+...+.+.|++++|++.|++. ...|+ ...|..+...+...|++++|+..++++++.+|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444455555555555555555554 33443 3445555555555555555555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 044628 576 VYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 576 ~y~~~g~~~~A~~~~~~m~~ 595 (665)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555543
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=6.8e-07 Score=84.77 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHH
Q 044628 433 WTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD--SEHYTCLTDL 510 (665)
Q Consensus 433 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 510 (665)
+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566778889999999998888764 465545555556788889999999999866541 1 121 2356777888
Q ss_pred HHhcCChHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 511 LGRVGLLVEAYDLLASM---PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
+.+.|++++|++.|++. +..|. ...+..+..++...|+.++|...++++++.+|+ +.++..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999999988 22253 335667778889999999999999999999998 776666644
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=2.4e-06 Score=70.64 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
...+..+...+.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999988 3334 57788889999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 044628 579 SERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 579 ~~g~~~~A~~~~~~m~~~~ 597 (665)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=2.3e-06 Score=75.32 Aligned_cols=94 Identities=15% Similarity=-0.013 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 044628 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508 (665)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 508 (665)
...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|+..|+...+. -+.+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445566666666666666666666666664 33 3445666666666666666666666666652 122355666666
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 044628 509 DLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~ 527 (665)
.+|.+.|++++|++.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.37 E-value=2.1e-06 Score=75.39 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577788888899999999999999999999999999999999999999999999999888754
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=3e-06 Score=77.40 Aligned_cols=154 Identities=13% Similarity=-0.023 Sum_probs=104.8
Q ss_pred HhcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCcH
Q 044628 410 SKCGSIAGALQ---CFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH----AVRPD-SIAFLEVLSACSHGGLV 481 (665)
Q Consensus 410 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~ 481 (665)
...|++++|.+ .+..-.......+..+...|...|++++|...+++..+. +..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 554433345567777888888888888888888887762 11222 24567777788888999
Q ss_pred HHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCC
Q 044628 482 SEGLRYFNLMISDYHILP-D----SEHYTCLTDLLGRVGLLVEAYDLLASM----PIEPR----SDTLGAFIGACKVHGS 548 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~ 548 (665)
++|.+.+++..+...-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999888888766322122 2 345777788888899999998888776 11112 2335667778888999
Q ss_pred HHHHHHHHHHHHhcC
Q 044628 549 IGLAKWAAEKLLELE 563 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~ 563 (665)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.9e-06 Score=71.91 Aligned_cols=109 Identities=11% Similarity=-0.079 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 544 (665)
.+..+...+...|++++|++.|+...+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3445555666667777777777766652 2234566777777777777777777777766 3444 3567777778888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 044628 545 VHGSIGLAKWAAEKLLELE------PSKPVNYALVSNVY 577 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 577 (665)
..|++++|+..++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888 77666666665554
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=5.8e-06 Score=70.92 Aligned_cols=111 Identities=11% Similarity=-0.013 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAF 539 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 539 (665)
..+..+...+...|++++|.+.|+...+ ..|+ ...|..+...|.+.|++++|++.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3455555555566666666666666554 2344 455666666777777777777777665 3334 45677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 044628 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS 579 (665)
Q Consensus 540 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 579 (665)
..++...|++++|...++++++++|++...+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 8888888999999999999999999887777776666543
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=7e-06 Score=71.98 Aligned_cols=128 Identities=10% Similarity=-0.045 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 044628 431 VTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510 (665)
Q Consensus 431 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 510 (665)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.++...+. .+.+...|..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777888888888888888887752 234567777777888888888888888888762 23356778888888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChhHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 044628 511 LGRVGLLVEAYDLLASM-PIEP-RSDTLGA--FIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
+.+.|++++|.+.++++ ...| +...+.. +...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888877 3334 3344433 33336677888888888776654
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=1.5e-06 Score=74.35 Aligned_cols=91 Identities=12% Similarity=-0.115 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 044628 506 CLTDLLGRVGLLVEAYDLLASM-PIEPR-------------SDTLGAFIGACKVHGSIGLAKWAAEKLLEL-------EP 564 (665)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p 564 (665)
.....+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344445555555555555554 22222 237888888888888888888888888888 99
Q ss_pred CCCchH----HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 565 SKPVNY----ALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 565 ~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+++.+| ...+.+|...|++++|...+++..+.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 988888 99999999999999999999888653
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.1e-06 Score=90.06 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=58.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPD-SIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLV 518 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 518 (665)
+.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|++.+++..+. -+.+...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 44555666666666665553 332 345555555666666666666666666551 1223455556666666666666
Q ss_pred HHHHHHHhC-CCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 044628 519 EAYDLLASM-PIEPR-SDTLGAFIGA--CKVHGSIGLAKWAAE 557 (665)
Q Consensus 519 ~A~~~~~~~-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 557 (665)
+|++.++++ ...|+ ...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666555 22232 2233333333 555566666666666
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=2.9e-06 Score=70.98 Aligned_cols=92 Identities=12% Similarity=0.003 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 044628 505 TCLTDLLGRVGLLVEAYDLLASM-PIEPRS----DTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK---PVNYALVSNV 576 (665)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 576 (665)
..+...+.+.|++++|++.|++. ...|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455666777777777777766 223332 356666677777778888888888887777777 5667777788
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 044628 577 YASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 577 y~~~g~~~~A~~~~~~m~~~ 596 (665)
|...|++++|...++++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888777777653
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=4.1e-06 Score=69.89 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=87.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVY 577 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 577 (665)
+...+..+...+...|++++|++.+++. ...| +...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999988 3344 5778888889999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 044628 578 ASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 578 ~~~g~~~~A~~~~~~m~~~~ 597 (665)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=4.3e-06 Score=87.28 Aligned_cols=145 Identities=14% Similarity=0.014 Sum_probs=101.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLT 508 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 508 (665)
....|..+...|.+.|++++|+..|++.++. .|+...+ . -++..+ ... -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~----~~~-----~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA----SES-----FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH----HHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH----HHH-----HHHHHHHHHH
Confidence 3446667777777777777777777777763 2221100 0 011110 000 1145778888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHH
Q 044628 509 DLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 586 (665)
.+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998887 4445 4778888999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHhh
Q 044628 587 AR-LRKMMRD 595 (665)
Q Consensus 587 ~~-~~~~m~~ 595 (665)
.+ .+++|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 75 4566643
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=4.5e-05 Score=74.82 Aligned_cols=179 Identities=11% Similarity=0.007 Sum_probs=101.6
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH------
Q 044628 414 SIAGALQCFGSVK---EPDLVTWTSIIGAYAFH-G-LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS------ 482 (665)
Q Consensus 414 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~------ 482 (665)
.++++++.++.+. .++...|+.-...+... + ++++++++++++.+.. .-|...+..-.-.+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 3566666665554 24555666555555554 5 6666666666666542 223444444433333333333
Q ss_pred --HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-------hHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH--
Q 044628 483 --EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL-------LVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSI-- 549 (665)
Q Consensus 483 --~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-- 549 (665)
+++++++.+.+. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|.-+-..+...|+.
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 666666666652 22355566666666666665 56677766665 3344 466666655555554432
Q ss_pred ------------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 550 ------------------GLAKWAAEKLLELE------PSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 550 ------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.........++... +.++.+...|+++|.+.|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222333333222 45566778999999999999999999999864
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=1.3e-06 Score=79.80 Aligned_cols=119 Identities=5% Similarity=-0.158 Sum_probs=85.4
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----------------hhHHH
Q 044628 476 SHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-----------------SDTLG 537 (665)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~ 537 (665)
...|.++++.+.|+....+ .......+..+...+.+.|++++|++.|++. ...|+ ..+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555554432221 1112445666677777788888888877776 22222 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 538 AFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 538 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
.+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++....
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999988754
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=2e-06 Score=90.23 Aligned_cols=118 Identities=7% Similarity=-0.030 Sum_probs=100.3
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSI 549 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 549 (665)
...+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34567889999999999999883 2335888999999999999999999999998 5566 477889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCHHHHHHHHH
Q 044628 550 GLAKWAAEKLLELEPSKPVNYALVSNV--YASERCWFDVARLRK 591 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~ 591 (665)
++|++.++++++++|+++.++..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 889999999999988
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=6.7e-06 Score=69.56 Aligned_cols=100 Identities=10% Similarity=-0.113 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 044628 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIG 541 (665)
Q Consensus 464 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 541 (665)
+...+..+...+...|++++|...|+..... .+.+...|..+..++...|++++|++.+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666677777777777777776652 2234566777777777777777777777766 3334 4567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 542 ACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
++...|+++.|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=1.2e-06 Score=72.20 Aligned_cols=83 Identities=10% Similarity=0.000 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHhC-CC---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 044628 514 VGLLVEAYDLLASM-PI---EPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588 (665)
Q Consensus 514 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 588 (665)
.|++++|++.|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666666666666 33 242 45566666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhC
Q 044628 589 LRKMMRDN 596 (665)
Q Consensus 589 ~~~~m~~~ 596 (665)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766543
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=3.1e-06 Score=72.41 Aligned_cols=72 Identities=13% Similarity=-0.071 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC-hhHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM-PI-------EPR-SDTL----GAFIGACKVHGSIGLAKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 569 (665)
.|..+..++.+.|++++|++.+++. .+ .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777666 44 886 5578 889999999999999999999999999998876
Q ss_pred HHHHH
Q 044628 570 YALVS 574 (665)
Q Consensus 570 ~~~l~ 574 (665)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65443
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=7.1e-06 Score=79.47 Aligned_cols=110 Identities=10% Similarity=-0.091 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHH
Q 044628 464 DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIG 541 (665)
Q Consensus 464 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 541 (665)
+...+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456777888888999999999999998872 2336778888999999999999999999887 66664 667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
++...|++++|+..++++++++|+++..+...++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 8999999999999999999998887554443333
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=7.3e-06 Score=68.51 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=46.0
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--------hhHHHHHH
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR--------SDTLGAFI 540 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~~~~~~ll 540 (665)
+...+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++. .+.|+ ..+|..+.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444444444444444443 122 2334444444444444444444444443 11111 12455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPS 565 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~ 565 (665)
.++...|++++|++.++++++..|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6677777777777777777777664
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=0.00055 Score=67.13 Aligned_cols=229 Identities=12% Similarity=0.045 Sum_probs=145.7
Q ss_pred HcCCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHhCCCC-chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 044628 340 GQNGDGREAVKLLRDMLQGSFCPDEVT-LASILSSCGSLS-ISCETRQVHAYAIKNGVQAFLSIENALINAYSKC-G-SI 415 (665)
Q Consensus 340 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~ 415 (665)
.+.+..++|++++.++... .|+..| ++.--..+...| .++++..+...+++.. +.+..+|+.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3344445566666666553 233322 222222222334 3566666666665543 23344445444455554 5 78
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc----
Q 044628 416 AGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSK--------ESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL---- 480 (665)
Q Consensus 416 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 480 (665)
+++.++++++.+ +|...|+--.-.+.+.|..+ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 899999998875 56778877666666666666 9999999999974 3366778777777777775
Q ss_pred ---HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC-------
Q 044628 481 ---VSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLL--------------------VEAYDLLASM-PI------- 529 (665)
Q Consensus 481 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------- 529 (665)
++++++++++++.. .+-|...|+-+-.++.+.|+. .+..++..++ +.
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 78999999988872 334677787777778777764 3445555555 22
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHH
Q 044628 530 EPRSDTLGAFIGACKVHGSIGLAKWAAEKLL-ELEPSKPVNYALVS 574 (665)
Q Consensus 530 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 574 (665)
.+....+.-|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2456678888899999999999999999997 78887655555443
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=1.1e-05 Score=80.31 Aligned_cols=144 Identities=11% Similarity=-0.026 Sum_probs=108.1
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHH
Q 044628 414 SIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPD----------------SIAFLEVLSA 474 (665)
Q Consensus 414 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a 474 (665)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443331 24557777888888888888888888888875 343 3678888888
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 552 (665)
+.+.|++++|++.|+.+.+. -+.+...|..+..+|...|++++|++.|+++ .+.| +...+..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998872 2346778888999999999999999999888 5556 466777888888888888888
Q ss_pred -HHHHHHHHh
Q 044628 553 -KWAAEKLLE 561 (665)
Q Consensus 553 -~~~~~~~~~ 561 (665)
...++++++
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456666654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=5.8e-06 Score=68.41 Aligned_cols=98 Identities=12% Similarity=-0.056 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHh
Q 044628 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKV 545 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 545 (665)
+..+...+.+.|++++|+..|+...+. -+.+...|..+..++.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334455666777777777777777762 2235667777777778888888888887777 4455 35677777788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 044628 546 HGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 546 ~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
.|+.++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888753
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=5.1e-06 Score=69.38 Aligned_cols=108 Identities=8% Similarity=-0.088 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----hhHHHH
Q 044628 468 FLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PI----EPR----SDTLGA 538 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 538 (665)
+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.++++ .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444445555555555555555441 1223444555555555555555555555554 11 111 445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
+..++...|+++.|...++++++..| ++.....+..++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66777777777777777777777777 3555555555543
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.16 E-value=4.7e-06 Score=83.13 Aligned_cols=148 Identities=10% Similarity=-0.056 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456677777788888888888888888764 454432 233444444433221 136788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCCHHHH
Q 044628 510 LLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA-SERCWFDV 586 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~~~A 586 (665)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4455 56788888899999999999999999999999999999888888844 55677778
Q ss_pred HHHHHHHhhCC
Q 044628 587 ARLRKMMRDNC 597 (665)
Q Consensus 587 ~~~~~~m~~~~ 597 (665)
...+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876554
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=6.6e-06 Score=68.67 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK-------PVNYA 571 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 571 (665)
...|..+...+...|++++|++.+++. ...| +...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778889999999999999999988 3334 57788888899999999999999999999998876 77899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 572 LVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 572 ~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.5e-05 Score=82.51 Aligned_cols=188 Identities=8% Similarity=-0.101 Sum_probs=133.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C---C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH
Q 044628 407 NAYSKCGSIAGALQCFGSVKE--P---D---------------LVTWTSIIGAYAFHGLSKESIEVFEKMLSHA-VRPDS 465 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 465 (665)
..+.+.|++++|.+.|..+.+ + + ..++..+...|...|++++|.+.+.++...- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345667788888877766542 1 0 1246778889999999999999998877621 11222
Q ss_pred H----HHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCC
Q 044628 466 I----AFLEVLSACSHGGLVSEGLRYFNLMISDY---HILP-DSEHYTCLTDLLGRVGLLVEAYDLLASM-------PIE 530 (665)
Q Consensus 466 ~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~ 530 (665)
. +.+.+-..+...|..+++.++++...... +..+ -...+..+...|...|++++|.+++++. ..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 23333344566789999999998876421 2222 2457788999999999999999998876 112
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----CchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 531 PR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS---K----PVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 531 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
|. ..++..++..|...|++++|+..+++++...+. . ...+..++.++...|++++|...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 456777889999999999999999998865422 1 2456678888999999999998876664
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=8.4e-06 Score=65.81 Aligned_cols=99 Identities=15% Similarity=0.014 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChhHHHHHHHH
Q 044628 467 AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP---RSDTLGAFIGA 542 (665)
Q Consensus 467 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 542 (665)
.+..+...+...|++++|...|+...+. .+.+...|..+..++.+.|++++|++.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444455555666666666666665552 1224455666666666666666666666665 2333 35566666677
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCC
Q 044628 543 CKVH-GSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 543 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 567 (665)
+... |+.++|++.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777777643
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=2.1e-05 Score=65.53 Aligned_cols=103 Identities=11% Similarity=0.011 Sum_probs=68.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-h---hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhHHHHHHH
Q 044628 471 VLSACSHGGLVSEGLRYFNLMISDYHILPD-S---EHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR----SDTLGAFIG 541 (665)
Q Consensus 471 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 541 (665)
+...+...|++++|.+.|+.+.+. .|+ . ..+..+..++.+.|++++|++.+++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344455667777777777766652 232 2 35666677777777777777777766 23333 445666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 044628 542 ACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNV 576 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 576 (665)
++...|+.++|+..++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 78888888999999988888888876554444333
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=8e-06 Score=71.05 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM----PIEPR----SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPS------KPV 568 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 568 (665)
.+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555556666555555554 00111 334556666777778888888888777765321 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 569 NYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888899999999999988887654
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=7.9e-05 Score=79.53 Aligned_cols=170 Identities=6% Similarity=-0.090 Sum_probs=139.3
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 044628 412 CGSIAGALQCFGSVKE---PDLVTWTSIIGAYAFHGL----------SKESIEVFEKMLSHAVRP-DSIAFLEVLSACSH 477 (665)
Q Consensus 412 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 477 (665)
....++|.+.++++.. .+...|+.--..+...|+ ++++++.++++.+. .| +..+|..-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3445677888887763 566788887777777777 89999999999986 45 45678888888888
Q ss_pred CC--cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc------
Q 044628 478 GG--LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG-LLVEAYDLLASM-PIEP-RSDTLGAFIGACKVH------ 546 (665)
Q Consensus 478 ~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 546 (665)
.| ++++++++++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|......+...
T Consensus 120 l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 88 779999999999983 2346778888888888999 899999999998 6666 577898887776653
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 044628 547 --------GSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFD 585 (665)
Q Consensus 547 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 585 (665)
+.++++.+.++++++++|++..+|..+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=1.3e-05 Score=80.87 Aligned_cols=138 Identities=13% Similarity=-0.021 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHH
Q 044628 430 LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILP-DSEHYTCLT 508 (665)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 508 (665)
...|..+...+.+.|++++|++.|++.++. .|+.. ..... +...+ ..| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~---~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK---LQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG---GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH---HHHHHHHHHHHHH
Confidence 456777888888888899998888887762 11100 00011 11111 112 356788889
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHH
Q 044628 509 DLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDV 586 (665)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 586 (665)
.+|.+.|++++|++.++++ ...|+ ...|..+..++...|++++|+..++++++++|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 66664 678888889999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 044628 587 ARL 589 (665)
Q Consensus 587 ~~~ 589 (665)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00036 Score=68.06 Aligned_cols=169 Identities=10% Similarity=0.003 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044628 401 IENALINAYSKCG--SIAGALQCFGSVK---EPDLVTWTSIIGAYAFHGL-SKESIEVFEKMLSHAVRPDSIAFLEVLSA 474 (665)
Q Consensus 401 ~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 474 (665)
+|+--...+.+.| .++++..+++++. ..|...|+--.-.+...|. .+++++.++++++.. .-|...|+.....
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3333333334444 2555665555554 2455555555555555555 356666666666542 1233333333222
Q ss_pred HhcC--------------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----------CChHHHHHHHHhC-C
Q 044628 475 CSHG--------------GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRV-----------GLLVEAYDLLASM-P 528 (665)
Q Consensus 475 ~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~ 528 (665)
+.+. +.++++++++...... .+-|...|+-+-.++.+. +.++++++.++++ .
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 2221 3455566666655541 122344444333333333 3355555555555 4
Q ss_pred CCCChhHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 529 IEPRSDTLGAFIGAC-----KVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 529 ~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
..||. .|..+..+. ...|..++....+.++.+++|...+.|.-+
T Consensus 267 ~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 267 LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 44443 343222111 123445555556666666666544444433
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00029 Score=68.72 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=132.8
Q ss_pred HHHHHHHHhcCC---CCChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-HHHHHHHH
Q 044628 415 IAGALQCFGSVK---EPDLVTWTSIIGAYAFHGL--SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL-VSEGLRYF 488 (665)
Q Consensus 415 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 488 (665)
++++..+++.+. .++..+|+.-.-.+...|+ +++++++++++.+.. .-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 3688899988888888884 899999999999963 3366677777777777787 69999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc------
Q 044628 489 NLMISDYHILPDSEHYTCLTDLLGRV--------------GLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVH------ 546 (665)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 546 (665)
+.+++. -+-|...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999983 344677777777766655 5688999999888 4455 677887655554443
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCCHHHHHHHHHHHhhCC
Q 044628 547 -----GSIGLAKWAAEKLLELEPSKPVNYALVSNVY---ASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 547 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---~~~g~~~~A~~~~~~m~~~~ 597 (665)
+.++++++.++++++++|++.-.+..++.+. ...|..+++...+.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999999855444443322 24677888888888887543
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=6.8e-06 Score=72.06 Aligned_cols=77 Identities=18% Similarity=0.050 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP-VNYALVSNVY 577 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y 577 (665)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 457888888999999999999998887 4455 467888889999999999999999999999999987 4454554444
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=2.3e-05 Score=81.55 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=93.0
Q ss_pred HhcCCcHHHHHHHHHHHHHhcC--CCC----ChhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-hhHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYH--ILP----DSEHYTCLTDLLGRVGLLVEAYDLLASM---------PIEPR-SDTLGA 538 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 538 (665)
+...|++++|+.++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777776655321 112 2456778888888888888888877765 34454 556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLE-----LEPSKPVN---YALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
|...|..+|++++|+..++++++ ++|++|.+ ...+..++.+.|++++|+.+++++++...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999875 56776544 45788899999999999999999987543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=1.5e-05 Score=79.48 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044628 399 LSIENALINAYSKCGSIAGALQCFGSVKE--PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACS 476 (665)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 476 (665)
...+..+...|.+.|++++|...|++... ++.. .+...|+..++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999998653 3222 1223334444433221 136777888899
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhHHHHHHHH-HHhcCCHHHHH
Q 044628 477 HGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR-SDTLGAFIGA-CKVHGSIGLAK 553 (665)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~ 553 (665)
+.|++++|+..++...+. -+.+...|..+..+|...|++++|++.|+++ .+.|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999872 2336788899999999999999999999998 66675 3445444444 23456778889
Q ss_pred HHHHHHHhcCCCCC
Q 044628 554 WAAEKLLELEPSKP 567 (665)
Q Consensus 554 ~~~~~~~~~~p~~~ 567 (665)
..++++++..|+++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999999864
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=3.7e-06 Score=69.14 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 044628 478 GGLVSEGLRYFNLMISDYH--ILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAK 553 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 553 (665)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777651 1 1223556777777888888888888888777 4445 3667777778888889999999
Q ss_pred HHHHHHHhcCCCCCchHH
Q 044628 554 WAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~ 571 (665)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888765443
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=2.8e-05 Score=81.09 Aligned_cols=65 Identities=6% Similarity=-0.150 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788888999999999999999999999999999999999999999999999999999998654
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=3.3e-05 Score=67.06 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hh
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVR-PDS----IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SE 502 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 502 (665)
++..+...|...|++++|++.+++..+.... ++. .++..+...+...|++++|.+.++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555666666666666555542100 111 24555556666667777777666665542111111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM-------PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP 564 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 564 (665)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|+.++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5566667777777777777776665 1111 133566666778888888888888888876543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.5e-06 Score=69.17 Aligned_cols=92 Identities=12% Similarity=-0.079 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 044628 500 DSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK------PVNYA 571 (665)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 571 (665)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888899999999988887 4445 56778888889999999999999999999999998 67778
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 044628 572 LVSNVYASERCWFDVARLRK 591 (665)
Q Consensus 572 ~l~~~y~~~g~~~~A~~~~~ 591 (665)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665544
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=3.5e-05 Score=77.70 Aligned_cols=112 Identities=7% Similarity=-0.046 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhHHHHHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEP-RSDTLGAFIGACK 544 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 544 (665)
..+..+...+.+.|++++|++.|++..+.. +.. ......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456666777777888888888887776510 100 0001111111 1233 3567888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 545 VHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 545 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
..|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988754
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.91 E-value=2.7e-05 Score=63.54 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=64.8
Q ss_pred HHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 519 EAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 519 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666655 4455 46678888888899999999999999999999999999999999999999999999999887653
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=4.3e-05 Score=60.58 Aligned_cols=65 Identities=17% Similarity=0.006 Sum_probs=60.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 532 RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 532 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788889999999999999999999999999999999999999999999999999999988653
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00011 Score=75.91 Aligned_cols=159 Identities=13% Similarity=-0.042 Sum_probs=119.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSHAVRPDS----------------IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPD 500 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 500 (665)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+.+..+-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999985322111 24677889999999999999999988764333333
Q ss_pred hh----hHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 044628 501 SE----HYTCLTDLLGRVGLLVEAYDLLASM-------PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLEL------ 562 (665)
Q Consensus 501 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 562 (665)
.. ..+.+...+...|++++|.++++.. ...+. ..++..|...+...|++++|...+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2334444555678999999988776 22333 557778889999999999999999998753
Q ss_pred CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 563 EPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 563 ~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
.|.....+..++.+|...|++++|...+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222346788999999999999999999988764
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=6.1e-06 Score=70.41 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=60.9
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 044628 513 RVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGS----------IGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580 (665)
Q Consensus 513 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 580 (665)
|.+++++|++.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555554 3333 34444444444444433 67999999999999999999999999999987
Q ss_pred C-----------CHHHHHHHHHHHhhCCC
Q 044628 581 R-----------CWFDVARLRKMMRDNCD 598 (665)
Q Consensus 581 g-----------~~~~A~~~~~~m~~~~~ 598 (665)
| ++++|.+.|++..+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999998886543
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=4.9e-05 Score=58.63 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777888888888888888777 3334 46678888888899999999999999999999999888888888887
Q ss_pred hcC
Q 044628 579 SER 581 (665)
Q Consensus 579 ~~g 581 (665)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.74 E-value=0.00012 Score=56.69 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=60.7
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 531 PRSDTLGAFIGACKVHGS---IGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 531 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
+++..|..+..++...++ .++|...++++++++|+++.+...++.++.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467778888888765554 699999999999999999999999999999999999999999999977643
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=7.5e-05 Score=77.69 Aligned_cols=113 Identities=11% Similarity=-0.095 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHH
Q 044628 510 LLGRVGLLVEAYDLLASM---------PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLE-----LEPSKP---VNYA 571 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 571 (665)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++| ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 23344 55788899999999999999999999985 456654 4577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHH
Q 044628 572 LVSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLM 640 (665)
Q Consensus 572 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~ 640 (665)
.|+.+|..+|++++|..++++..+.-. +.- ...||...++..++.+...++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTH-----------------GPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh-----------------CCCChHHHHHHHHHHHHHHHH
Confidence 899999999999999999998875321 111 257999988888887765443
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.62 E-value=0.0001 Score=75.56 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=80.5
Q ss_pred HHhcCChHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHH
Q 044628 511 LGRVGLLVEAYDLLASM---------PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLE-----LEPSKP---VNYAL 572 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 572 (665)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666655544 11222 44677788888888888888888888874 345554 45778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 044628 573 VSNVYASERCWFDVARLRKMMRDNCDHKVPGCSWIEIAGEIHTFVSSDRSHPQAVHMYAMLCTVFGLME 641 (665)
Q Consensus 573 l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~ 641 (665)
|+.+|..+|++++|..++++..+.- .+.- ...||...+++..|++...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~-~~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM-RVTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH-HHhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887531 1111 2579999999999988887775
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=5.9e-05 Score=64.32 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc-
Q 044628 480 LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGL----------LVEAYDLLASM-PIEPR-SDTLGAFIGACKVH- 546 (665)
Q Consensus 480 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~- 546 (665)
.+++|++.++...+. -+.+...|..+..++...|+ +++|+..|++. .+.|+ ...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344455555544441 11234444444444444443 34666666665 44553 44566666666555
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCC
Q 044628 547 ----------GSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 547 ----------g~~~~a~~~~~~~~~~~p~~~ 567 (665)
|++++|+..|+++++++|++.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999974
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00022 Score=57.23 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 531 PRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 531 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
++...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788888999999999999999999999999999999999999999999999999999988654
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.52 E-value=0.00096 Score=71.11 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCc----------HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 044628 444 GLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGL----------VSEGLRYFNLMISDYHILPDSEHYTCLTDLLG 512 (665)
Q Consensus 444 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 512 (665)
...++|++.++++.+. .|+.. .|+.--.++.+.|+ +++++++++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4456889999999985 77665 45555555555565 89999999999983 3346777888888889
Q ss_pred hcC--ChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 044628 513 RVG--LLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHG-SIGLAKWAAEKLLELEPSKPVNYALVSNVYASE------- 580 (665)
Q Consensus 513 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~------- 580 (665)
+.| ++++|++.++++ ...| +...|..-.......| ..+++.+.++++++.+|.+..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999999 4455 6788998888888888 899999999999999999999999999998874
Q ss_pred -------CCHHHHHHHHHHHhhCC
Q 044628 581 -------RCWFDVARLRKMMRDNC 597 (665)
Q Consensus 581 -------g~~~~A~~~~~~m~~~~ 597 (665)
+++++|.+.+++.....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC
Confidence 66789999888776543
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00033 Score=56.91 Aligned_cols=81 Identities=15% Similarity=-0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044628 483 EGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFIGACKVHGSIGLAKWAAEKLL 560 (665)
Q Consensus 483 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 560 (665)
+|++.|+...+ .-+.+...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|+.++|+..+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666654 12234666777777777777777777777776 3344 35677777778888888888888888888
Q ss_pred hcCCC
Q 044628 561 ELEPS 565 (665)
Q Consensus 561 ~~~p~ 565 (665)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87765
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.0016 Score=54.80 Aligned_cols=50 Identities=6% Similarity=-0.151 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 044628 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYAS----ERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 546 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 597 (665)
.++.++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 45556666666665554 345566666666666 666666666666666554
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00015 Score=74.09 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCce
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLE-----LEPSKP---VNYALVSNVYASERCWFDVARLRKMMRDNCDHKVPGC 604 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 604 (665)
..+++.|..+|...|++++|+.+++++++ +.|++| ..|..|+.+|..+|++++|..++++..+.-. +.-
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~l-- 416 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VAH-- 416 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT--
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHc--
Confidence 34667777777788888888888777764 345544 4577888899999999999999888765321 111
Q ss_pred eEEEECCEEEEEEeCCCCCcchHHHHHHHH
Q 044628 605 SWIEIAGEIHTFVSSDRSHPQAVHMYAMLC 634 (665)
Q Consensus 605 s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~ 634 (665)
...||...+++..|+
T Consensus 417 ---------------G~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 417 ---------------GKDHPYISEIKQEIE 431 (433)
T ss_dssp ---------------CTTCHHHHHHHHHHH
T ss_pred ---------------CCCChHHHHHHHHHh
Confidence 256888877765544
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.00061 Score=52.22 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5577888888999999999999999999999999999999999999999999999999988764
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0015 Score=55.00 Aligned_cols=113 Identities=12% Similarity=-0.099 Sum_probs=92.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChH
Q 044628 443 HGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGR----VGLLV 518 (665)
Q Consensus 443 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 518 (665)
.++.++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 44444 667778888899999999999872 467788888888888 89999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 044628 519 EAYDLLASMPIEPRSDTLGAFIGACKV----HGSIGLAKWAAEKLLELEP 564 (665)
Q Consensus 519 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 564 (665)
+|+++|++.-..-+...+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998323467777888888887 8899999999999998754
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.17 E-value=0.0064 Score=59.53 Aligned_cols=142 Identities=20% Similarity=0.105 Sum_probs=75.2
Q ss_pred CChhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCh
Q 044628 428 PDLVTWTSIIGAYA--FHGL---SKESIEVFEKMLSHAVRPDS-IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDS 501 (665)
Q Consensus 428 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 501 (665)
.+...|...+.+.. ..++ ..+|..+|++.++. .|+. ..+..+.-++.. . . . .+ |..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~----------~--~-~-~~--~~~ 253 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIV----------R--H-S-QH--PLD 253 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH----------H--H-H-HS--CCC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH----------H--h-c-cC--CCc
Confidence 56777777776643 3333 46888999998885 7765 344444433330 0 0 0 01 110
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASMPI-EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASE 580 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 580 (665)
.... . ...+|.+....+.. ..++.++..+...+...|++++|+..++++++++|+ ...|..++.++.-.
T Consensus 254 ~~~~---~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 254 EKQL---A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK 323 (372)
T ss_dssp HHHH---H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT
T ss_pred hhhH---H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC
Confidence 0000 0 01222222222321 224555555555555566777777777777776653 45556667777777
Q ss_pred CCHHHHHHHHHHHhhCC
Q 044628 581 RCWFDVARLRKMMRDNC 597 (665)
Q Consensus 581 g~~~~A~~~~~~m~~~~ 597 (665)
|++++|.+.+++.....
T Consensus 324 G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 324 GMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 77777776666665443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.06 E-value=0.0027 Score=64.84 Aligned_cols=93 Identities=9% Similarity=-0.155 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-hhHHHHHHH
Q 044628 478 GGLVSEGLRYFNLMISDYH--ILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM---------PIEPR-SDTLGAFIG 541 (665)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~ 541 (665)
.|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666544211 2222 355667777777777777777777665 34454 456788888
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCCchH
Q 044628 542 ACKVHGSIGLAKWAAEKLLE-----LEPSKPVNY 570 (665)
Q Consensus 542 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 570 (665)
.|..+|++++|+..++++++ ++|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 88888999999888888875 567765543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.03 E-value=0.0014 Score=51.32 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 044628 507 LTDLLGRVGLLVEAYDLLASM-PIEP-RSD-TLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNY 570 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 570 (665)
....+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556666666666666665 3334 234 555556666666666666666666666666665544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.99 E-value=0.0031 Score=49.18 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-hHHHHHHHHHHhcCC
Q 044628 472 LSACSHGGLVSEGLRYFNLMISDYHILPDSE-HYTCLTDLLGRVGLLVEAYDLLASM-PIEPRS-DTLGAFIGACKVHGS 548 (665)
Q Consensus 472 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~ 548 (665)
...+...|++++|++.|+.+.+. .+.+.. .|..+..+|.+.|++++|++.|++. ...|+. ..|.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 34556667777777777776652 122345 6666677777777777777777666 334432 22211 34
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 044628 549 IGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 549 ~~~a~~~~~~~~~~~p~~~ 567 (665)
+.++...++++.+.+|+++
T Consensus 77 ~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 5556666666666655543
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.0034 Score=49.29 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 429 DLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456666666677777777777777776664 33 334566666666677777777777666654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0054 Score=62.71 Aligned_cols=97 Identities=13% Similarity=-0.038 Sum_probs=61.8
Q ss_pred HhcCCcHHHHHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-hhHHHH
Q 044628 475 CSHGGLVSEGLRYFNLMISDYH--ILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM---------PIEPR-SDTLGA 538 (665)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 538 (665)
+...|++++|++++++..+... +.|+ ..+++.+..+|...|++++|+.+++++ +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3445566666666666654211 1121 345666666777777777777766655 33444 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 044628 539 FIGACKVHGSIGLAKWAAEKLLE-----LEPSKPVNYA 571 (665)
Q Consensus 539 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 571 (665)
|...|..+|++++|+..++++++ ++|++|.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88888888888888888888875 5677665444
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.0064 Score=59.54 Aligned_cols=39 Identities=8% Similarity=-0.192 Sum_probs=34.6
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 559 LLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 559 ~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.+..+|.++.+|..++.++...|++++|...++++...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 446789999999999999998999999999999998775
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.82 E-value=0.14 Score=41.29 Aligned_cols=141 Identities=6% Similarity=0.017 Sum_probs=98.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 044628 440 YAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 519 (665)
+.-.|..++..++..+.... .+..-++-++.-....-+-+...+.++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34457777777777777653 23334444444444444555556666665543222 24566666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 520 AYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 520 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
....+-.++ .+...+..-+.....+|+.++-.+++..++.-+|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666553 245556667788899999999999999987777777999999999999999999999999999999975
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.67 E-value=0.005 Score=57.74 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=69.6
Q ss_pred hHHHHHHHHhC-CCCCC---hhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCHHH
Q 044628 517 LVEAYDLLASM-PIEPR---SDTLGAFIGACKV-----HGSIGLAKWAAEKLLELEPSK-PVNYALVSNVYASE-RCWFD 585 (665)
Q Consensus 517 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 585 (665)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 55665 5567777777777 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 044628 586 VARLRKMMRDNCDHKVPG 603 (665)
Q Consensus 586 A~~~~~~m~~~~~~~~~~ 603 (665)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877665454
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.61 E-value=0.075 Score=59.52 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=62.0
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 044628 408 AYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRY 487 (665)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 487 (665)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 4566788888888877764 567888888888888888888888887643 22333333335555544444
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 488 FNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
-+..... | .++.-..+|.+.|++++|++++.++
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333321 1 1223334455556666666655554
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.45 E-value=0.0015 Score=65.17 Aligned_cols=238 Identities=13% Similarity=0.066 Sum_probs=162.1
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 044628 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275 (665)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 275 (665)
.+.+|+.|..++.+.|.+.+|++-|- ...|...|..+|.+..+.|.+++-+..+...++..- +...=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45677778888888888888777663 345666788888888888888888887766655432 33334567788888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------------------------CCchh
Q 044628 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTA------------------------KNVVS 331 (665)
Q Consensus 276 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 331 (665)
.+++.+-++.+. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 887765444332 46666666777888888888888888877642 37789
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044628 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK 411 (665)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 411 (665)
|-.+-.+|...+++.-|.-.--.++- .||. ...++..|-..|.+++-..+++.-.. --.....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHh
Confidence 99999999999988776544333321 1221 23455668888888888887776552 123567788888888888
Q ss_pred cCCHHHHHHHHhc----CCC-------CChhHHHHHHHHHHhcCChHHHHH
Q 044628 412 CGSIAGALQCFGS----VKE-------PDLVTWTSIIGAYAFHGLSKESIE 451 (665)
Q Consensus 412 ~g~~~~A~~~~~~----~~~-------~~~~~~~~li~~~~~~g~~~~A~~ 451 (665)
- ++++-.+-++. +.- .....|.-++-.|.+..+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 34444443332 221 355688999999998888887754
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.31 E-value=0.021 Score=45.04 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-----P----IEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYAL 572 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 572 (665)
.-+..|...+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445566666666666666666655 1 12346678888899999999999999999999999998776554
Q ss_pred HH
Q 044628 573 VS 574 (665)
Q Consensus 573 l~ 574 (665)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.18 Score=56.46 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChH
Q 044628 267 SSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGR 346 (665)
Q Consensus 267 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 346 (665)
..++..+.+.|..+.|.++.+. .. .-......+|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4455555566666666554321 11 11334567788888888877664 4567888888888888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044628 347 EAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS 424 (665)
Q Consensus 347 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (665)
.|.+.|.++.. |..+...+...|+.+....+-+.....|. ++.-..+|.++|++++|.+++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887754 22333333335555554444444443331 12333455666666666555444
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.28 E-value=0.0097 Score=59.54 Aligned_cols=397 Identities=9% Similarity=0.049 Sum_probs=230.2
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCCCCc-hHHHHHhhhCCCCCCcchHHHHHHHHhcC
Q 044628 97 KLSLQNQVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCGGNV-TPYFRRMLLDNVRLDHITFNSLLRACVQA 175 (665)
Q Consensus 97 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (665)
.+.+|..|..++.+.|++.+|.+-| +...|...|..+|....+.|.++ +--|-.|.+... -+...=+.|+-+|++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKT 129 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHHHHTS
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHHHHhh
Confidence 4556777777777777777776654 33455566777777777777777 544555544432 2334445677777777
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccC------------------------CCCchhH
Q 044628 176 DDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVL------------------------CRDLVLW 231 (665)
Q Consensus 176 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~ 231 (665)
+++.+-++++ -.|+..-...+-+-+...|.++.|.-+|..+. ..++.+|
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 6654433322 13444444555555666666666666665541 2367799
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044628 232 NVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKN 311 (665)
Q Consensus 232 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 311 (665)
--+-.+|+..+.+.-|.-.--.+.-. || -...++.-|-..|.+++-..+++..+... ......++-|.-.|+|-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 99999999999988776554444322 22 22345666788888888888888766322 45778888888888886
Q ss_pred CCHHHHHHHHhccCC-----------CCchhHHHHHHHHHcCCChHHHHHH-------------HHHHhhCCCCCCHHHH
Q 044628 312 GNIDDACRVFDGMTA-----------KNVVSWNTMVVGFGQNGDGREAVKL-------------LRDMLQGSFCPDEVTL 367 (665)
Q Consensus 312 g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~t~ 367 (665)
+.++-.+-++..-. .....|.-++-.|++-.+++.|... |.+.... ..|...|
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~Eiy 353 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELY 353 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHH
Confidence 33444433332221 2445788888888888888877642 1111110 1232333
Q ss_pred ---------------HHHHHHhCCCCchHhHHHHHHHHH-----H-----hCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 368 ---------------ASILSSCGSLSISCETRQVHAYAI-----K-----NGVQAFLSIENALINAYSKCGSIAGALQCF 422 (665)
Q Consensus 368 ---------------~~ll~~~~~~~~~~~a~~i~~~~~-----~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (665)
+-+|.++...=+...+.+++...- + -.-..+..+-.++-+.|....|++.-+.-.
T Consensus 354 YKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SI 433 (624)
T 3lvg_A 354 YRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSI 433 (624)
T ss_dssp HHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 334444444444444444433211 0 001223445566777777777766655544
Q ss_pred hcCCC------------CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 044628 423 GSVKE------------PDLVTWTSI-IGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFN 489 (665)
Q Consensus 423 ~~~~~------------~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 489 (665)
+.-.. .+..-+..+ ...|.+++++.+++++.++ .+ .|.-.+...+.+|+.+-+.++++
T Consensus 434 d~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~ 504 (624)
T 3lvg_A 434 DAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQ 504 (624)
T ss_dssp SSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHH
T ss_pred HHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 43332 222222222 3345666777777655422 11 12223455667888888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 044628 490 LMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLA 525 (665)
Q Consensus 490 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 525 (665)
-.++. -+.+++.+.+-.+...=+++-++++--
T Consensus 505 yFv~~----g~~EcF~a~LytCYdLlrpDvVlElaW 536 (624)
T 3lvg_A 505 WFLQE----EKRECFGACLFTCYDLLRPDVVLETAW 536 (624)
T ss_dssp HHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHHH
T ss_pred HHHHc----CchHHHHHHHHHHhhccChHHHHHHHH
Confidence 88763 455667666666666677888888743
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.02 Score=48.07 Aligned_cols=89 Identities=13% Similarity=-0.068 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--ChhHHHHHHHHHHhcCCHHH
Q 044628 479 GLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVG---LLVEAYDLLASM-PIE-P--RSDTLGAFIGACKVHGSIGL 551 (665)
Q Consensus 479 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~ 551 (665)
+....+.+.|.+..+ .+ .++..+...+..++.+.+ +.++++.++++. ... | +...+-.|.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345556666666554 12 356666667777777766 555777777666 222 4 24445555566677777777
Q ss_pred HHHHHHHHHhcCCCCCch
Q 044628 552 AKWAAEKLLELEPSKPVN 569 (665)
Q Consensus 552 a~~~~~~~~~~~p~~~~~ 569 (665)
|++.++++++++|++..+
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 777777777777775443
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.08 E-value=0.032 Score=42.82 Aligned_cols=69 Identities=14% Similarity=-0.001 Sum_probs=48.8
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 498 LPDSEHYTCLTDLLGRVGL---LVEAYDLLASM-PIEPR-SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 498 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
+.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456667777777754444 67888888777 55564 4556666677788888888888888888888873
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.07 E-value=0.023 Score=47.80 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHH
Q 044628 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGG---LVSEGLRYFNLMISDYHILP--DSEHYTCLTDLLGRVGLLVE 519 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 519 (665)
....+.+.|.+....|. ++..+-..+..++.+++ ++++|+.+++...+. . .| +.+.+-.|.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34566677777766653 66666666777777777 667888888888773 2 24 35556667777888888888
Q ss_pred HHHHHHhC-CCCCChh
Q 044628 520 AYDLLASM-PIEPRSD 534 (665)
Q Consensus 520 A~~~~~~~-~~~p~~~ 534 (665)
|.+.++.+ .++|+..
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 88888888 6667543
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.34 Score=41.73 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 044628 407 NAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLR 486 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 486 (665)
+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.--|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4556788888888887766 4677888888888888888888888877653 2233333444566555444
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 487 YFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKL 559 (665)
Q Consensus 487 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 559 (665)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44333321 1 23444455666788888888887775333221 1223466777777776654
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.64 Score=40.04 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=83.1
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHH
Q 044628 204 VDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGR 283 (665)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 283 (665)
.+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456788888888887766 3566788888888888888888888887643 334444455567776666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHH
Q 044628 284 QIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355 (665)
Q Consensus 284 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 355 (665)
++-+.....| -++.....+.-.|+++++.++|.+...-+ --+......|..+.|.++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 6666555554 13444455566788888888876654411 1111122245566666666655
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.27 E-value=3.8 Score=43.55 Aligned_cols=249 Identities=12% Similarity=0.007 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchH
Q 044628 302 TSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISC 381 (665)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 381 (665)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+++-..|- .....+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC
Confidence 3444555667777777776655 333444444556667777777667666666554442 12223344444444333221
Q ss_pred hH--HHHHHHHHHhC-----------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH---HHHHHHHHHhcC
Q 044628 382 ET--RQVHAYAIKNG-----------VQAF-LSIENALINAYSKCGSIAGALQCFGSVKEPDLVT---WTSIIGAYAFHG 444 (665)
Q Consensus 382 ~a--~~i~~~~~~~g-----------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g 444 (665)
.. .+=+..+...| +.++ ......++..+.+-.. +....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 11 11111111111 1111 1122222322222222 22222221 111111 1111222333 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 044628 445 LSKESIEVFEKMLSHAVRPDSI----AFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEA 520 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 520 (665)
+.+.|..++....+.. ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 7788888888876543 22332 2223333444455355666666665431 23333333344445577899999
Q ss_pred HHHHHhCCCCC-ChhHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 044628 521 YDLLASMPIEP-RSDTLG-AFIGACKVHGSIGLAKWAAEKLLE 561 (665)
Q Consensus 521 ~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 561 (665)
.+.|+.|+..+ +..-|. =+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999885433 222222 233466678888889888888875
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.93 E-value=0.04 Score=51.66 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--hhHHHHHHHHHHh-cCCH
Q 044628 482 SEGLRYFNLMISDYHILPD---SEHYTCLTDLLGRV-----GLLVEAYDLLASM-PIEPR--SDTLGAFIGACKV-HGSI 549 (665)
Q Consensus 482 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~-~g~~ 549 (665)
.+|...+++.++ +.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......+.. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344444444443 3444 33455555555553 5666666666655 44442 3444444444444 3666
Q ss_pred HHHHHHHHHHHhcCCC
Q 044628 550 GLAKWAAEKLLELEPS 565 (665)
Q Consensus 550 ~~a~~~~~~~~~~~p~ 565 (665)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666666655
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.59 E-value=0.097 Score=43.31 Aligned_cols=53 Identities=6% Similarity=-0.249 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 044628 546 HGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCD 598 (665)
Q Consensus 546 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 598 (665)
.+|.++|+++|+.++++...-+..|...+..-.++|+.+.|++++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 36777777777777666444455566666666677777777777777766543
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.26 Score=53.45 Aligned_cols=55 Identities=11% Similarity=-0.049 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 540 IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 540 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
...|...|+++.|..++++++..-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3557788999999999999999999999999999999999999999999998884
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.81 E-value=0.41 Score=38.57 Aligned_cols=74 Identities=16% Similarity=-0.010 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 044628 499 PDSEHYTCLTDLLGRVGLLVE---AYDLLASM-PIE-P--RSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYA 571 (665)
Q Consensus 499 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 571 (665)
|+..+--.+..++.+.....+ ++.++++. ... | .-...-.|.-++.+.|+++.|++.++.+++.+|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 455555555555555555444 55555555 212 3 1223444556788999999999999999999998765544
Q ss_pred H
Q 044628 572 L 572 (665)
Q Consensus 572 ~ 572 (665)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.23 E-value=0.29 Score=38.26 Aligned_cols=64 Identities=9% Similarity=-0.110 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 533 SDTLGAFIGACKVHGSIGLAKWAAEKLLELE-------PSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 533 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
......+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445567788899999999999999998753 334567899999999999999999999988754
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.06 E-value=3 Score=33.81 Aligned_cols=118 Identities=9% Similarity=-0.072 Sum_probs=70.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH----------------------HhCCChHHHHHHHhccCCCCch
Q 044628 172 CVQADDIEVGRRLHSFILKVGFGLNCFVSSALVDLY----------------------GKCGFVEDARRVFDEVLCRDLV 229 (665)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----------------------~~~g~~~~A~~~~~~~~~~~~~ 229 (665)
..-.|.++++.++.....++. +..-||-+|--. ..||++......+-.+. .+..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-~~se 92 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNE 92 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-chHH
Confidence 445688888888888887764 333333332222 22344444444443332 2333
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC
Q 044628 230 LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSF 294 (665)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 294 (665)
..+..++.+...|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 455566677777777777777777533 2356666777777777777777777777777777664
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.03 E-value=0.4 Score=39.69 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 514 VGLLVEAYDLLASM-PI-EPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 514 ~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
.++.++|.++|+.+ .+ +-=..+|.....--.++|++..|++++.+++++.|...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 46777777777776 11 11167787777777889999999999999999998753
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.66 E-value=0.45 Score=38.35 Aligned_cols=80 Identities=8% Similarity=-0.140 Sum_probs=58.0
Q ss_pred hHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCHHHHHHH
Q 044628 517 LVEAYDLLASM--PIEPRSDTLGAFIGACKVHGSIGL---AKWAAEKLLELE-P-SKPVNYALVSNVYASERCWFDVARL 589 (665)
Q Consensus 517 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~ 589 (665)
+..+.+-+.+. .-.|+..+-..+..++.+.++... |+.+++.+++.+ | ..-.....|+-.+.+.|++++|++.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433 123666666677777777765554 999999999877 5 3456677899999999999999999
Q ss_pred HHHHhhC
Q 044628 590 RKMMRDN 596 (665)
Q Consensus 590 ~~~m~~~ 596 (665)
.+.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998753
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.47 E-value=6.9 Score=39.78 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=81.8
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC------CC----chhHH
Q 044628 269 LVNSCGTLGSSKLGRQIHGLVIKQ--SFDLD---VLVATSLVDMYAKNGNIDDACRVFDGMTA------KN----VVSWN 333 (665)
Q Consensus 269 ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~ 333 (665)
|...+...|++.+|..++..+... |.... +..+...+..|...+++..|..++.++.. ++ ..-+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 444455566666666666655432 11111 23455566677777777777766665521 11 12355
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhC-CCCCCHHHHHHH-----HHH-hCCCCchHhHHHHHHHHHHhCCCCchhHHHHHH
Q 044628 334 TMVVGFGQNGDGREAVKLLRDMLQG-SFCPDEVTLASI-----LSS-CGSLSISCETRQVHAYAIKNGVQAFLSIENALI 406 (665)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l-----l~~-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 406 (665)
.++..+...+++.+|...|.+.... ...-|...+..+ +.. ++..+ .+... +.....+...-++...+..|+
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~-~~~~~-ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYG-NLQND-LIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCS-STTHH-HHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCC-chHHH-HHHHHhhcccccccHHHHHHH
Confidence 6666677777777777777666432 111122211111 111 12222 12222 222222222335667788888
Q ss_pred HHHHhc--CCHHHHHHHHhcCCCC
Q 044628 407 NAYSKC--GSIAGALQCFGSVKEP 428 (665)
Q Consensus 407 ~~~~~~--g~~~~A~~~~~~~~~~ 428 (665)
.+|... .+++.+.+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 888764 4577888888766543
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.05 E-value=8.6 Score=36.64 Aligned_cols=167 Identities=11% Similarity=0.066 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHH----HHHHhhCCCCCCHHHHHHHHHHhCC
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKL----LRDMLQGSFCPDEVTLASILSSCGS 376 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 376 (665)
|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 344556678888888888875432 3445666776665554 4555567888888888877777655
Q ss_pred CCchH-hHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCh
Q 044628 377 LSISC-ETRQVHAYAI----KNGV--QAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFH---GLS 446 (665)
Q Consensus 377 ~~~~~-~a~~i~~~~~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 446 (665)
...-+ .-..+...++ +.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..++--+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 1233444443 3332 246778888999999999999999877643323455555554444433 433
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
.++--. .-.+++. |.-.|++..|..+|+...+
T Consensus 185 ~e~dlf--------------~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAEF--------------FSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred chHHHH--------------HHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 332111 1122232 3456888999998887765
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.62 E-value=9.5 Score=36.31 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCHhhHHHHHHHHh
Q 044628 199 VSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV----FNLMRLEGMKGDYFTFSSLVNSCG 274 (665)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 274 (665)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555568889999999988643 23455667777665554 555566788888888877777765
Q ss_pred ccCCcH-HHHHHHHHHHH----hCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHc
Q 044628 275 TLGSSK-LGRQIHGLVIK----QSF--DLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQ 341 (665)
Q Consensus 275 ~~~~~~-~a~~~~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 341 (665)
....-+ .-.++...+++ .|- ..++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+.+
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 533211 22344444443 221 24777888888889999999888887763322244455444444333
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.89 E-value=4 Score=33.45 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=44.0
Q ss_pred CCChhhHHHHHHHHHhcCChH---HHHHHHHhC-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044628 498 LPDSEHYTCLTDLLGRVGLLV---EAYDLLASM-PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPV 568 (665)
Q Consensus 498 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 568 (665)
.|+..+--.+..++.+..+.+ +++.+++.. ...|+ -...--|.-++.+.|+++.|++..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 466666666677777766543 466666665 22231 223334445677777888888888888888887643
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.15 E-value=2 Score=34.73 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=31.1
Q ss_pred CChhhHHHHHHHHHhcCCh---HHHHHHHHhC-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044628 499 PDSEHYTCLTDLLGRVGLL---VEAYDLLASM-PIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSK 566 (665)
Q Consensus 499 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 566 (665)
|+..+--.+..++.+.... .+++.++++. ...|. -..+--|.-++.+.|+++.|++..+.+++.+|+|
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4444444444455554433 2344444444 11221 2233334445555555555555555555555554
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.03 E-value=27 Score=38.79 Aligned_cols=215 Identities=13% Similarity=0.046 Sum_probs=113.6
Q ss_pred HHHhcCCHHHHHHHHhccCCC----C--chhHHHHHHHHHcCCChHHHHHHHHHHhhCCC--CC---CH-HHHHH---HH
Q 044628 307 MYAKNGNIDDACRVFDGMTAK----N--VVSWNTMVVGFGQNGDGREAVKLLRDMLQGSF--CP---DE-VTLAS---IL 371 (665)
Q Consensus 307 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~-~t~~~---ll 371 (665)
+....|+.++++.+++..... + +..-..+.-|....|..++++.++.......- .- +. +.... +-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345677888888888776541 1 12233444566677777778887777654311 00 11 11111 11
Q ss_pred HHhCCCCchHhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHH--HHHHHHHHhcCChH
Q 044628 372 SSCGSLSISCETRQVHAYAIKNGVQA-FLSIENALINAYSKCGSIAGALQCFGSVKE-PDLVTW--TSIIGAYAFHGLSK 447 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~g~~~ 447 (665)
-++...++- ++...+..++...-.. .....-+|.-.|.-.|+-+....++..+.+ .+.... -++.-|+...|+.+
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 223334443 3334444333322110 011222334445566777766666665432 222222 33334455779999
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 044628 448 ESIEVFEKMLSHAVRPDSI-AFL---EVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDL 523 (665)
Q Consensus 448 ~A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 523 (665)
.+..+.+.+... .|.. -|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 998888888763 3432 333 3445788889987777788888773 222333333333334446776666666
Q ss_pred HHhC
Q 044628 524 LASM 527 (665)
Q Consensus 524 ~~~~ 527 (665)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 6654
No 245
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=90.01 E-value=15 Score=39.18 Aligned_cols=82 Identities=15% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 044628 334 TMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSK-- 411 (665)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-- 411 (665)
.....+.-.|+++.|++.+... ...|.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3556677789999999988754 35677777777766544432 11111110 01 11 1124567777765
Q ss_pred -cCCHHHHHHHHhcCC
Q 044628 412 -CGSIAGALQCFGSVK 426 (665)
Q Consensus 412 -~g~~~~A~~~~~~~~ 426 (665)
..+..+|.+.|--+.
T Consensus 368 ~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTCHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHh
Confidence 578888888776664
No 246
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=89.45 E-value=12 Score=39.83 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 044628 233 VMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAK-- 310 (665)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 310 (665)
.....+.-.|+++.|++.+-+. -..|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3556677789999999987754 24566667666666544432 11111110 00 11 1225667777765
Q ss_pred -cCCHHHHHHHHhccC
Q 044628 311 -NGNIDDACRVFDGMT 325 (665)
Q Consensus 311 -~g~~~~A~~~~~~~~ 325 (665)
..+..+|.+.|--+.
T Consensus 368 ~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTCHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHh
Confidence 477888888776653
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.29 E-value=16 Score=35.08 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHH----HHHhhCCCCCCHHHHHHHHHHhCC
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLL----RDMLQGSFCPDEVTLASILSSCGS 376 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 376 (665)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455567888888888887533 234455667765555443 555567888888888888777766
Q ss_pred CCchHh-HHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 044628 377 LSISCE-TRQVHAYA----IKNG--VQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKES 449 (665)
Q Consensus 377 ~~~~~~-a~~i~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 449 (665)
...-+- -..+...+ .+.| ..-|......+...|.+.+++.+|+.-|-.-.++....+..++--+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 553221 12333333 3334 334667778889999999999999988853222333556555444443332211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 450 IEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 450 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
+|...-.+++. |.-.+++..|..+|+...+
T Consensus 186 -------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 22222233333 4445788888887766654
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.97 E-value=32 Score=38.20 Aligned_cols=303 Identities=11% Similarity=0.040 Sum_probs=156.1
Q ss_pred HHHhCCChHHHHHHHhccCCC----C--chhHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCC---H--hhHHHHH--
Q 044628 206 LYGKCGFVEDARRVFDEVLCR----D--LVLWNVMVSCYALNCLGDGAIAVFNLMRLEGM--KGD---Y--FTFSSLV-- 270 (665)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~--~t~~~ll-- 270 (665)
+....|+.++++.+++..... + +..-..+.-|.+..|..+++++++.......- .-+ . ..-..+-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355678888899998887542 2 12333445567777877788887777654311 000 1 1111221
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCC---CchhHHHHHHHHHcCCCh
Q 044628 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDV--LVATSLVDMYAKNGNIDDACRVFDGMTAK---NVVSWNTMVVGFGQNGDG 345 (665)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 345 (665)
-++...++ +++...+..++... .... ...-+|...|.-.|+-+....++..+.+. ++.-.-++.-|+...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22233333 34445555554432 1111 11223334455667777777776654321 222233444556678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHH---HHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044628 346 REAVKLLRDMLQGSFCPDEVTLA---SILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCF 422 (665)
Q Consensus 346 ~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (665)
+.+..+.+.+.... .|. .-|. .+.-+|+..|+.....+++..+.... ..++.-...+.-+..-.|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888877531 222 2232 23346888899888887888777542 223332222222333467777777777
Q ss_pred hcCC-CCChhHH--HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hcCC-------cHHHHHHHHH
Q 044628 423 GSVK-EPDLVTW--TSIIGAYAFHGLS-KESIEVFEKMLSHAVRPDSIAFLEVLSAC--SHGG-------LVSEGLRYFN 489 (665)
Q Consensus 423 ~~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g-------~~~~a~~~~~ 489 (665)
+.+. ..|...- -++.-|....|.. .+|++++..+.. .+|..+-...+.++ .-.| ++.+.++.+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 7554 2344333 3344444444544 678888888874 55554433333332 2222 3444444444
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCC
Q 044628 490 LMISDYHILPDSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 490 ~~~~~~~~~p~~~~~~~l~~~~~~~g~ 516 (665)
....+..-.++...-..+..++..+|.
T Consensus 695 ~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 443311122334444555555555554
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.20 E-value=12 Score=36.96 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHH-----
Q 044628 403 NALINAYSKCGSIAGALQCFGSVKE--------PDLVTWTSIIGAYAFH-GLSKESIEVFEKMLSHAVRPDSIAF----- 468 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~----- 468 (665)
..|...|.+.|+.++..+++..... +.......++..+... +..+.-.++..+..+.. +-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566666666666666655542 2223344455555443 22222333333333210 0011122
Q ss_pred -HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 469 -LEVLSACSHGGLVSEGLRYFNLMISDYHILPD----SEHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 469 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
..+...|...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 13445556666666666666655553221111 233444455556666666666555544
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.76 E-value=7.4 Score=29.43 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=65.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 044628 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253 (665)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (665)
.....++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+.+..||...|-+|-.+ +.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34467899999999888764 333333344567889999999999999999999999887664 66777777777777
Q ss_pred HHHCCCCCCHhhHH
Q 044628 254 MRLEGMKGDYFTFS 267 (665)
Q Consensus 254 m~~~g~~p~~~t~~ 267 (665)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77665 34444443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.40 E-value=2.8 Score=35.42 Aligned_cols=26 Identities=8% Similarity=-0.084 Sum_probs=14.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 568 VNYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 568 ~~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
+.-..++.+|.+.|++++|..+.+.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 34445555666666666666555543
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.29 E-value=7.1 Score=29.50 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=66.4
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 044628 174 QADDIEVGRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNL 253 (665)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (665)
.....++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+.+..||...|-+|-.+ +.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34467889999998888764 333333344567889999999999999999999999887654 67888888888878
Q ss_pred HHHCCCCCCHhhHH
Q 044628 254 MRLEGMKGDYFTFS 267 (665)
Q Consensus 254 m~~~g~~p~~~t~~ 267 (665)
+...| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 87766 34444443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.42 E-value=3.8 Score=34.62 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 468 FLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 468 ~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
+..+.+++...|.+..|...|++..
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455555555555555555543
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.16 E-value=13 Score=30.52 Aligned_cols=69 Identities=10% Similarity=-0.043 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 044628 463 PDSIAFLEVLSACSHGG---LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPR 532 (665)
Q Consensus 463 p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 532 (665)
|+..|--.+..++.++. +..+++.+++.+.+. +-.-..+..--|.-++.|.|++++|.+..+.+ .++|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44444333334444433 344566666666552 11112333334455566666666666666665 44554
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.03 E-value=1.8 Score=43.32 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044628 536 LGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRD 595 (665)
Q Consensus 536 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 595 (665)
...++.++...|+.+++...++.++..+|-+-..|..++.+|.++|+..+|.+.|+..+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566777889999999999999999998888899999999999999999988877754
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.77 E-value=9.8 Score=28.81 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=57.2
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044628 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459 (665)
Q Consensus 380 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 459 (665)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++...+.++-.+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4445555554444443 222211223456678999999999999999999999888654 667788888888788777
Q ss_pred CCCCCHHHHHH
Q 044628 460 AVRPDSIAFLE 470 (665)
Q Consensus 460 g~~p~~~t~~~ 470 (665)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555544
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.67 E-value=9.3 Score=28.88 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=58.2
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044628 380 SCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGSVKEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH 459 (665)
Q Consensus 380 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 459 (665)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++-.+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4445455444444443 22221122345667899999999999999999999988755 4778888888888888877
Q ss_pred CCCCCHHHHHH
Q 044628 460 AVRPDSIAFLE 470 (665)
Q Consensus 460 g~~p~~~t~~~ 470 (665)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 665556644
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.43 E-value=22 Score=38.57 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=46.2
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 044628 271 NSCGTLGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMT 325 (665)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 325 (665)
..|...|+++.|.++-.+.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44667889999999999888874 6677889999999999999999999999886
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.20 E-value=27 Score=33.45 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCHhhHHHHHHHHhc
Q 044628 200 SSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAV----FNLMRLEGMKGDYFTFSSLVNSCGT 275 (665)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 275 (665)
|.++..=|.+.+++++|.+++-. -...+.+.|+...|-++ ++-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455558889999999988643 23455666776655544 3555667888888887777777665
Q ss_pred cCCcH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044628 276 LGSSK-LGRQIHGLVIK----QS--FDLDVLVATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 276 ~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (665)
...-+ .-..+...+++ .| -..|......+...|.+.+++.+|+.-|-
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 54321 12333333333 23 23456666777777777777777777764
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.01 E-value=3.7 Score=31.22 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 445 LSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 445 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446666677777778899999999999999999999999999999887543 44556766653
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.92 E-value=11 Score=30.57 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhHHH
Q 044628 462 RPDSIAFLEVLSACSHGG---LVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSDTLG 537 (665)
Q Consensus 462 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 537 (665)
.|+..|--.+..++.++. +..+|+.+++.+.+. +-.-..+.+--|.-++.|.|++++|.+..+.+ .++|+..--.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 455555444455555554 456788888888763 21113455566777888889999998888887 7777644333
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.78 E-value=4.8 Score=30.59 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 519 EAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 519 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
.++.-+-.+..-|++.+..+.+.||++.+++..|.++++-+...-.+...+|-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 3444444557889999999999999999999999999998865544434556544
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.41 E-value=28 Score=34.46 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCCChhhH--
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSH-AVRPDS---IAFLEVLSACSHG-GLVSEGLRYFNLMISDYHILPDSEHY-- 504 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~-- 504 (665)
....|...|.+.|+.++..+++...+.- +.-|-. .....++..+... +..+.-.++.....+... -+...|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4566788899999999999998877542 111212 2356777777664 334444444444443111 111222
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHhC----C-CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCC--
Q 044628 505 ----TCLTDLLGRVGLLVEAYDLLASM----P-IEPR---SDTLGAFIGACKVHGSIGLAKWAAEKLLELE---PSKP-- 567 (665)
Q Consensus 505 ----~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~-- 567 (665)
.-+++.|...|++.+|.+++.++ . .... ..++..-+..|...+|...++.++.++.... +.+|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 36789999999999999998888 1 1111 1223334467888999999999998886432 1222
Q ss_pred --chHHHHHHHHH-hcCCHHHHHHHHHHH
Q 044628 568 --VNYALVSNVYA-SERCWFDVARLRKMM 593 (665)
Q Consensus 568 --~~~~~l~~~y~-~~g~~~~A~~~~~~m 593 (665)
.....-|-++. ..|+|.+|...|-..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22335566777 899999999887554
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.43 E-value=12 Score=34.61 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 044628 442 FHGLSKESIEVFEKMLSHAVRP-DSIAFLEVLSACSHGGLVSEGLRYFNLMI 492 (665)
Q Consensus 442 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 492 (665)
+.|..++|++....-++. .| |...-..++.-+|-.|+++.|.+-++...
T Consensus 9 ~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444444444444443 22 22333334444444444444444444443
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.61 E-value=47 Score=33.52 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCCC----h
Q 044628 432 TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDS-----IAFLEVLSACSHGGLVSEGLRYFNLMISD-YHILPD----S 501 (665)
Q Consensus 432 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~----~ 501 (665)
....|...|...|++.+|.+++.++...-...+. ..+...++.|...+++.+|..+++++... ....+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778889999999999999998763222222 24566677899999999999999887431 112222 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM 527 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (665)
..|.+++..+...+++.+|-..|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46788888999999999998887766
No 266
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.41 E-value=9.3 Score=37.97 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=42.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCChhh
Q 044628 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS----DYHILPDSEH 503 (665)
Q Consensus 435 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 503 (665)
.++..+...|++++|+..++.+.... .-+...+..++.++...|+..+|++.|+...+ +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556666777777777766666541 23556677777777777777777777766543 3466666543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.64 E-value=5.9 Score=36.54 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=77.4
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCChh----HHHHHHHHHHhcC
Q 044628 473 SACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDLLGRVGLLVEAYDLLASM-PIEPRSD----TLGAFIGACKVHG 547 (665)
Q Consensus 473 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~g 547 (665)
....+.|.++++++....-++ .-+-|...-..++.+|+-.|+++.|.+-++.. ...|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 456788999999999998887 45567888899999999999999999988877 4556533 34444433
Q ss_pred CHHHHHHHHHHHHh--cCC---CCCchHH-HHHH--HHHhcCCHHHHHHHHHHHhhC
Q 044628 548 SIGLAKWAAEKLLE--LEP---SKPVNYA-LVSN--VYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 548 ~~~~a~~~~~~~~~--~~p---~~~~~~~-~l~~--~y~~~g~~~~A~~~~~~m~~~ 596 (665)
+..=++++. ..| ..+..+. .|.. .....|+.++|.+++....+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333334443 112 2233333 3444 444679999999999999664
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.50 E-value=33 Score=39.68 Aligned_cols=160 Identities=8% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCC------HHHHHHHHHHh
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPD------EVTLASILSSC 374 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~ 374 (665)
...++..+.+.|..+.+.++..-.+ .+...--.+..+|...|++++|.+.|.+.-. |+..+ ......+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 3346666777788877777655444 3444445667788999999999999987532 22111 11111111111
Q ss_pred CCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCCh----hHHHHHHHHHHhcCCh
Q 044628 375 GSLSISCETRQVHAYAIKNGVQAFLSIENALINAYSKCGSIAGALQCFGS----VKEPDL----VTWTSIIGAYAFHGLS 446 (665)
Q Consensus 375 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~ 446 (665)
.. ...-..-|.-++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++
T Consensus 893 ~~------------------~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 893 HH------------------QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp TS------------------CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred cc------------------cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 00 011123355566667777777666654432 222221 2688899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHH
Q 044628 447 KESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVS 482 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 482 (665)
++|...+-.+.....+ ...+..++..++..|..+
T Consensus 955 e~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp GGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 9999999888765433 345555666555555443
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.11 E-value=16 Score=42.25 Aligned_cols=82 Identities=12% Similarity=-0.016 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCC-CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 044628 503 HYTCLTDLLGRVGLLVEAYDLLASM----PIE-PR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSN 575 (665)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 575 (665)
-|.-++..+.+.|.++.+.++-+.+ +.. ++ ...|..+..++...|++++|-.++-..-...- .......|+.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-r~~cLr~LV~ 979 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-HHHHHHHHHH
Confidence 4566667777777777777665544 111 11 12466677777777777777666544432221 1344445555
Q ss_pred HHHhcCCHHH
Q 044628 576 VYASERCWFD 585 (665)
Q Consensus 576 ~y~~~g~~~~ 585 (665)
..++.|..++
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 5666665444
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.92 E-value=8.1 Score=31.16 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 044628 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTD 509 (665)
Q Consensus 446 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 509 (665)
.-+..+-++.+....+.|++......|.+|.+.+++..|.++|+.++.+. .+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 34555666677777889999999999999999999999999999998753 444556766653
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.75 E-value=19 Score=31.58 Aligned_cols=64 Identities=8% Similarity=0.107 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
.|...+..| ..++......+|..+.. ++-..+..|...+..+...|++.+|.++++....++.+
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344444433 24456778888888764 55666778888888899999999999998888776653
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.78 E-value=14 Score=29.86 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 044628 518 VEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALV 573 (665)
Q Consensus 518 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 573 (665)
..++.-+-.+.+-|++.+..+-+.+|++.+|+..|.++++-+...-.+....|-.+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 44555555667889999999999999999999999999998865443334556544
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.19 E-value=31 Score=31.73 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=22.6
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHh
Q 044628 276 LGSSKLGRQIHGLVIKQSFDLDVLV--ATSLVDMYAKNGNIDDACRVFD 322 (665)
Q Consensus 276 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 322 (665)
.++.....++.+.+.+.|..++... ....+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3343344455555566655443211 1123334455666666666665
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=72.31 E-value=52 Score=31.18 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 524 LASMPIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 524 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
|...+++|. ..++.+-+..+.+++|+..|....++++++.|.. ...++|+++...-...+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 333366774 4567777788999999999999999999999952 13456777777666443
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=71.71 E-value=49 Score=28.61 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=7.1
Q ss_pred CHhhHHHHHHHHhccCC
Q 044628 262 DYFTFSSLVNSCGTLGS 278 (665)
Q Consensus 262 ~~~t~~~ll~~~~~~~~ 278 (665)
+...-...+.++...|+
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333444444444443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.32 E-value=22 Score=35.80 Aligned_cols=92 Identities=11% Similarity=-0.026 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCc----hH
Q 044628 502 EHYTCLTDLLGRVGLLVEAYDLLASM-----PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLELEP--SKPV----NY 570 (665)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~~----~~ 570 (665)
.....+.+.|.+.|++++|.+.+.++ +..--...+..+++.|...+|+..+....+++..+.. .++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35566777777777777777777776 2222244566666777777777777777777654321 1121 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 044628 571 ALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 571 ~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
..-+-++...++|.+|.+.|-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 23344555677777777776554
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.89 E-value=37 Score=28.21 Aligned_cols=79 Identities=5% Similarity=-0.078 Sum_probs=51.0
Q ss_pred HHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044628 518 VEAYDLLASM-PIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKMMR 594 (665)
Q Consensus 518 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 594 (665)
+.+...|..- ..+.|..-...-+.......+ ...+|+.+.. ++-..+..|...+..+...|++++|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345555444 334454433333322222233 6778887764 556667788899999999999999999999888
Q ss_pred hCCCc
Q 044628 595 DNCDH 599 (665)
Q Consensus 595 ~~~~~ 599 (665)
.++.+
T Consensus 129 ~~~A~ 133 (152)
T 4a1g_A 129 QNQAE 133 (152)
T ss_dssp HTTCB
T ss_pred HcCCc
Confidence 77653
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.54 E-value=30 Score=31.86 Aligned_cols=206 Identities=13% Similarity=0.044 Sum_probs=110.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCChh---HHHHHHHHhhcCCChHHHHHHHcccCCC---CcccHHHHHHHHHhC
Q 044628 69 ALKVSAKFGFLQQGKQLHSHIMKLGLCNKLS---LQNQVLHVYVKCKAFDDMEKLFDEMRVR---NIVTWNTLISGIINC 142 (665)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 142 (665)
.|...++.|+++..+ .+++.|..++.. ...+.+...++.|+.+-+..+++.-..+ |..-++.+..+ ++.
T Consensus 8 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHH
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHc
Confidence 444556677765444 445556444322 1224556667788888888777764332 33333344333 333
Q ss_pred CCCchHHHHHhhhCCCCCCcchH--HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchH------------HHHHHHHHHH
Q 044628 143 GGNVTPYFRRMLLDNVRLDHITF--NSLLRACVQADDIEVGRRLHSFILKVGFGLNCF------------VSSALVDLYG 208 (665)
Q Consensus 143 ~~~~~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------~~~~li~~~~ 208 (665)
|. .++++.+.+.|..++.... .+.+...+..|+.+ +.+.+.+.|..++.. ...+.+...+
T Consensus 83 ~~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 83 GS--VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp TC--HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred CC--HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 33 4566666667766653321 12344445566654 455566666555422 1123455566
Q ss_pred hCCChHHHHHHHhcc-CC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhh--HHHHHHHHhccCCcHHH
Q 044628 209 KCGFVEDARRVFDEV-LC---RDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT--FSSLVNSCGTLGSSKLG 282 (665)
Q Consensus 209 ~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 282 (665)
+.|+.+-+..+++.. .. +|...++.+.. .+..|+.....++++.+.+.|..++... -.+.+...+..|+.+.+
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 235 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 788888888888763 11 23333344433 4456666666777788888887665432 12234444555665544
Q ss_pred HHHH
Q 044628 283 RQIH 286 (665)
Q Consensus 283 ~~~~ 286 (665)
+.++
T Consensus 236 ~~Ll 239 (285)
T 1wdy_A 236 QRLL 239 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.13 E-value=48 Score=27.91 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=37.3
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 552 AKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 552 a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
...+|+.+.. +.-..+..|...+..|...|++.+|.++++....++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5566777754 55666778888999999999999999999888877653
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.68 E-value=59 Score=32.62 Aligned_cols=93 Identities=13% Similarity=-0.043 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHH--H
Q 044628 401 IENALINAYSKCGSIAGALQCFGSVKE------PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSH---AVRPDSIAF--L 469 (665)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~--~ 469 (665)
+...+.+.|.++|++++|.+.|.++.. .-+..|-.+|..+...+++..+...+++.... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445677888888888888888877652 23346666777777778888888777776542 222222211 1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 470 EVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 470 ~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
.-...+...+++.+|.+.|-....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 122234556777777777766655
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.96 E-value=39 Score=32.82 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCH
Q 044628 403 NALINAYSKCGSIAGALQCFGSVKEPD---LVTWTSIIGAYAFHGL--SKESIEVFEKMLSHAVRPDS 465 (665)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 465 (665)
+.++.=|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+...|+-+..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 567888999999999999999998654 2334445555554333 34577777777777655443
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.56 E-value=45 Score=29.74 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=25.5
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCChHHHHHHHhc
Q 044628 170 RACVQADDIEVGRRLHSFILKVGFGLNCF--VSSALVDLYGKCGFVEDARRVFDE 222 (665)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 222 (665)
...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33444566666666666555555443321 112233344455666555555543
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.48 E-value=93 Score=26.76 Aligned_cols=79 Identities=14% Similarity=0.009 Sum_probs=33.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHH
Q 044628 426 KEPDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYT 505 (665)
Q Consensus 426 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 505 (665)
..++...-...+.++...|+. ++...+.++.. .++...-...+.++...|. +++...+..+..+ ++...-.
T Consensus 117 ~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~ 187 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARK 187 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHH
Confidence 334444444444444444432 23333333332 2344444444444444443 3344444444442 3444444
Q ss_pred HHHHHHHh
Q 044628 506 CLTDLLGR 513 (665)
Q Consensus 506 ~l~~~~~~ 513 (665)
..+.++.+
T Consensus 188 ~A~~aL~~ 195 (201)
T 3ltj_A 188 VAVNYLET 195 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.47 E-value=96 Score=26.93 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 044628 196 NCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGT 275 (665)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 275 (665)
|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .+|...-...+.++..
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4444444444444445433333444444444544444445555555542 23333333332 2444444444555555
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHH
Q 044628 276 LGSSKLGRQIHGLVIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDM 355 (665)
Q Consensus 276 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 355 (665)
.++.+....+.. +. -.++..+-...+.++.+.|..+....+...+.+++...-...+.++.+.+. .++...+.++
T Consensus 108 ~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 108 IGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 554332222222 22 134444555555555555543322223333333443333333444444433 3344444444
Q ss_pred h
Q 044628 356 L 356 (665)
Q Consensus 356 ~ 356 (665)
.
T Consensus 183 l 183 (211)
T 3ltm_A 183 A 183 (211)
T ss_dssp H
T ss_pred H
Confidence 3
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.01 E-value=57 Score=30.33 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=7.0
Q ss_pred hcCCChHHHHHHHcc
Q 044628 109 VKCKAFDDMEKLFDE 123 (665)
Q Consensus 109 ~~~g~~~~A~~~f~~ 123 (665)
++.|+.+-+..+++.
T Consensus 39 ~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 39 IADNNVRLVCTLLNA 53 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhC
Confidence 344555544444443
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.86 E-value=67 Score=28.53 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=30.8
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHhhcCCChHHHHHHHccc
Q 044628 71 KVSAKFGFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDEM 124 (665)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~ 124 (665)
...+..|+.+..+.+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344566777777777777766665444321 123344445566666666665543
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.63 E-value=1.2e+02 Score=26.28 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=6.6
Q ss_pred CChhHHHHHHHHHHhcC
Q 044628 428 PDLVTWTSIIGAYAFHG 444 (665)
Q Consensus 428 ~~~~~~~~li~~~~~~g 444 (665)
++...-...+.++...|
T Consensus 124 ~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIG 140 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 33333333334444433
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.50 E-value=63 Score=27.69 Aligned_cols=17 Identities=0% Similarity=0.184 Sum_probs=10.1
Q ss_pred hhcCCChHHHHHHHccc
Q 044628 108 YVKCKAFDDMEKLFDEM 124 (665)
Q Consensus 108 ~~~~g~~~~A~~~f~~~ 124 (665)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666544
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.78 E-value=46 Score=29.54 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=10.9
Q ss_pred HHHHhhcCCChHHHHHHHccc
Q 044628 104 VLHVYVKCKAFDDMEKLFDEM 124 (665)
Q Consensus 104 li~~~~~~g~~~~A~~~f~~~ 124 (665)
.+...++.|+.+-+..+++.-
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcC
Confidence 344445556655555555543
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.59 E-value=82 Score=25.24 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhccCCCC---chhHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCC
Q 044628 200 SSALVDLYGKCGFVEDARRVFDEVLCRD---LVLWNVMVSCYALNCL--GDGAIAVFNLMRLEGMKGD 262 (665)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 262 (665)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567777888888999998888887652 2344445555555432 3456777777777665443
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.31 E-value=1.8e+02 Score=26.75 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=33.7
Q ss_pred hHHHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCChHHHHHHHhc
Q 044628 147 TPYFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF--VSSALVDLYGKCGFVEDARRVFDE 222 (665)
Q Consensus 147 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 222 (665)
.++++.+.+.|..++...-.+.|...+..|+.+-++ .+++.|..++.. ...+-+...+..|+.+-+..+++.
T Consensus 44 ~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 44 VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 444555555565555443334455555666655443 334445444321 111223334455666555555544
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.47 E-value=1.2e+02 Score=24.23 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCc---hhHHHHHHHHHcCCC--hHHHHHHHHHHhhCCCCCCHH
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTAKNV---VSWNTMVVGFGQNGD--GREAVKLLRDMLQGSFCPDEV 365 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 365 (665)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45678888888999999999999876522 344555556666542 456778888888777555443
No 293
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.13 E-value=1.9e+02 Score=26.39 Aligned_cols=18 Identities=11% Similarity=-0.302 Sum_probs=7.9
Q ss_pred CChhhHHHHHHHHHhcCC
Q 044628 499 PDSEHYTCLTDLLGRVGL 516 (665)
Q Consensus 499 p~~~~~~~l~~~~~~~g~ 516 (665)
++..+-...+.++++.|.
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 333333444444555443
No 294
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.38 E-value=1.8e+02 Score=25.38 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=51.0
Q ss_pred HHHHHHHhcCC--CCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHH
Q 044628 416 AGALQCFGSVK--EPDLV---TWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFN 489 (665)
Q Consensus 416 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 489 (665)
+.+.+.|.... +.|.. .|-..+..+ ..+...++.++|..|...||--... -|......+...|++++|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555544 24443 344444433 2344668888888888887766554 45555666777788888888888
Q ss_pred HHHHhcCCCC
Q 044628 490 LMISDYHILP 499 (665)
Q Consensus 490 ~~~~~~~~~p 499 (665)
.-++ .+-.|
T Consensus 140 ~GI~-~~A~P 148 (202)
T 3esl_A 140 LGAE-NNCRP 148 (202)
T ss_dssp HHHH-TTCBS
T ss_pred HHHH-cCCcc
Confidence 7776 34455
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.98 E-value=1.2e+02 Score=26.58 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=9.0
Q ss_pred hccCCcHHHHHHHHHHHHhC
Q 044628 274 GTLGSSKLGRQIHGLVIKQS 293 (665)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~g 293 (665)
+..|+.+.+..+++.+++.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 33444444444444444444
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.79 E-value=97 Score=27.93 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=13.8
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 044628 235 VSCYALNCLGDGAIAVFNLMR 255 (665)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~ 255 (665)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 556666677777777766654
No 297
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=40.58 E-value=1.7e+02 Score=30.02 Aligned_cols=170 Identities=11% Similarity=0.018 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 044628 415 IAGALQCFGSVKE-PDLVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGLVSEGLRYFNLMIS 493 (665)
Q Consensus 415 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 493 (665)
+.+|.++|.+... -+.........-|...+-++.|+++.-..-+. ..|....+..+-+++-... ...+.|+.=.
T Consensus 51 L~eAl~Lf~~va~~l~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~~-~Dp~~~Al~~~~~g~p~~D---~~~~~f~~R~- 125 (525)
T 3i5p_A 51 LKNATALLEQIVDDLSIEKLKEAVSMMLSVNYYPKSIEFLLNIANS-MDKGKLACQYVANGFLEND---DRKQYYDKRI- 125 (525)
T ss_dssp HHHHHC----------CHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-HHCSSHHHHHHHHTCSSSS---SCHHHHHHHH-
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-hCCcccHHHHHhCCCCCcC---HHHHHHHHHH-
Confidence 4567777776542 23333344566777777888877776555443 2555555444444332221 1222222111
Q ss_pred hcCCCCChhhHHHHHHHHHhcCC-----------------hHHHHHHHHhC----CCCCChhHHHHHHHHHHhcCCHHHH
Q 044628 494 DYHILPDSEHYTCLTDLLGRVGL-----------------LVEAYDLLASM----PIEPRSDTLGAFIGACKVHGSIGLA 552 (665)
Q Consensus 494 ~~~~~p~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a 552 (665)
..|..+.+++.+... .+++.+..+++ --..|......|-.-+..+|..++-
T Consensus 126 --------~cY~~I~~~L~~ld~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~DelFH~~LYdWli~~gl~d~L 197 (525)
T 3i5p_A 126 --------LVYDLVFDTLIKVDELAEKKQSSKTQNQISISNDDEVKLRQKSYEAALKYNDRLFHYHMYDWLVSQNREEKL 197 (525)
T ss_dssp --------HHHHHHHHHHHHTC------------------------CCSTTHHHHSSSCCHHHHHHHHHHHHHTTCGGGG
T ss_pred --------HHHHHHHHHHHHHHHHhhccCCCCCCccccccchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcchh
Confidence 133333333322110 01222222222 2234555555555666666654432
Q ss_pred HHH-----HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 553 KWA-----AEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 553 ~~~-----~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
.++ ..-+.+..|++.....+|-..|.+.|++-+|.++...+...+
T Consensus 198 L~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 198 LDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp GGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred hcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 221 111223456677778888899999999999999998887663
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.53 E-value=2.7e+02 Score=26.89 Aligned_cols=61 Identities=16% Similarity=0.332 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHcCCC--hHHHHHHHHHHhhCCCCC
Q 044628 302 TSLVDMYAKNGNIDDACRVFDGMTAKN---VVSWNTMVVGFGQNGD--GREAVKLLRDMLQGSFCP 362 (665)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 362 (665)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 455555666666666666666665442 1223333334433322 234455555555554433
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.28 E-value=78 Score=26.25 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHhccCCCC---chhHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCC
Q 044628 200 SSALVDLYGKCGFVEDARRVFDEVLCRD---LVLWNVMVSCYALNCL--GDGAIAVFNLMRLEGMKGD 262 (665)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 262 (665)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566777888888888888888887652 2344445555554322 3456677777776665433
No 300
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.97 E-value=1.3e+02 Score=26.38 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=7.7
Q ss_pred hhcCCChHHHHHHHcc
Q 044628 108 YVKCKAFDDMEKLFDE 123 (665)
Q Consensus 108 ~~~~g~~~~A~~~f~~ 123 (665)
.++.|+++....+++.
T Consensus 13 A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 13 LAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555443
No 301
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.94 E-value=1.8e+02 Score=27.48 Aligned_cols=288 Identities=13% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHH---HHHHHhhcCCChHHHHHHHcccCCCCcccHHHHHHHHHhCC
Q 044628 67 SQALKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQN---QVLHVYVKCKAFDDMEKLFDEMRVRNIVTWNTLISGIINCG 143 (665)
Q Consensus 67 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~ 143 (665)
++.|...++.|++ ++.+.+++.|..++...-. +-+..-++.|+.+-+.-+++.-..++....+..........
T Consensus 26 ~t~L~~Av~~g~~----~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDV----DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCH----HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred CCchHHHHHhhhCCCCCCcchHH--HHHHHHhcCCChHHHHHHHHHHHHhCCCCchHHHH--------HHHHHHHhCCCh
Q 044628 144 GNVTPYFRRMLLDNVRLDHITFN--SLLRACVQADDIEVGRRLHSFILKVGFGLNCFVSS--------ALVDLYGKCGFV 213 (665)
Q Consensus 144 ~~~~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--------~li~~~~~~g~~ 213 (665)
.........+...+..++..... +.+...+..|+.+....+++.-............. +-+...++.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Q ss_pred HHHHHHHhcc---CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhhHH--HHHHHHhccCCcHHHHHHHHH
Q 044628 214 EDARRVFDEV---LCRDLVLWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFTFS--SLVNSCGTLGSSKLGRQIHGL 288 (665)
Q Consensus 214 ~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~ 288 (665)
+-+..++++. +..-.....+-+...+..+.......+.+.+.+.|..++..... +.+...+..|+.+....++..
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHH
Q 044628 289 VIKQSFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVT 366 (665)
Q Consensus 289 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 366 (665)
--..--..|..-.+.|..+ ++.|+.+-+.-+++.=..+|..+ .+..-++.|+.+ +.+-+.+.|-.||...
T Consensus 262 ~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 262 EHIEINDTDSDGKTALLLA-VELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDFHP 331 (337)
T ss_dssp TTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC----
T ss_pred cCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCCCC
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.95 E-value=86 Score=28.30 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=42.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 044628 437 IGAYAFHGLSKESIEVFEKMLSH--AVRP----DSIAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSEHYTCLTDL 510 (665)
Q Consensus 437 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 510 (665)
+..+..+.++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+ . -.++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHHH
Confidence 45566666777777766655541 2221 1111122222222211222233333333 2 13445555666778
Q ss_pred HHhcCChHHHHHHHHhC
Q 044628 511 LGRVGLLVEAYDLLASM 527 (665)
Q Consensus 511 ~~~~g~~~~A~~~~~~~ 527 (665)
+.|.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888877544
No 303
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=34.68 E-value=2.9e+02 Score=25.86 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=24.9
Q ss_pred HHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHHHHhCCCCchHHHHHhhhCCCCCC
Q 044628 104 VLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGIINCGGNVTPYFRRMLLDNVRLD 161 (665)
Q Consensus 104 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~m~~~g~~p~ 161 (665)
.+...+..|+.+-+..+++.-.. +|..-++.|..+ +..|+ .++++.+.+.|..++
T Consensus 61 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~--~~iv~~Ll~~g~~~~ 118 (351)
T 3utm_A 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA-CSYGH--YEVTELLLKHGACVN 118 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTC--HHHHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH-HHCCC--HHHHHHHHHCCCCCC
Confidence 34444556666666666654332 222223333333 22332 344444555555444
No 304
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.28 E-value=1.5e+02 Score=28.08 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=43.6
Q ss_pred HHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 044628 524 LASMPIEPR--SDTLGAFIGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNC 597 (665)
Q Consensus 524 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 597 (665)
|...+++|. ..++..-+..+.+++|+..|-...++++++.|.. . ..++|+++...-...+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~-------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP-E-------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH-H-------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-H-------------HHHHHHHHHHHHhcCC
Confidence 333366664 4466777788999999999999999999998861 1 2455777777666543
No 305
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.89 E-value=2.5e+02 Score=27.62 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=22.5
Q ss_pred HHHhcCChHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 044628 510 LLGRVGLLVEAYDLLASMPIEP---RSDTLGAFIGACKVHGSIGLAKWAAE 557 (665)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~ 557 (665)
..++.|+.+-+.-+++.- ..+ |..-+..|- .....|+.+....+++
T Consensus 317 ~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 317 VASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLK 365 (437)
T ss_dssp HHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHH-HHHHCChHHHHHHHHH
Confidence 344567766555555542 222 222233333 3345677765555554
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.79 E-value=97 Score=25.69 Aligned_cols=64 Identities=16% Similarity=0.307 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHcCCC--hHHHHHHHHHHhhCCCCCCH
Q 044628 301 ATSLVDMYAKNGNIDDACRVFDGMTAKN---VVSWNTMVVGFGQNGD--GREAVKLLRDMLQGSFCPDE 364 (665)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 364 (665)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567788888889999999988887652 2344455555555432 45567777777776654443
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.57 E-value=2.1e+02 Score=24.93 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHH---cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCc-----hHhHHHHHHHHHHhCC
Q 044628 332 WNTMVVGFG---QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI-----SCETRQVHAYAIKNGV 395 (665)
Q Consensus 332 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~i~~~~~~~g~ 395 (665)
.--+|+++. +..+.+.|+-.+.+|.+.| .|..+.-..++-+....|. +..+...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334556654 4689999999999999999 8877777777777666664 2333344444444454
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.43 E-value=54 Score=29.14 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=62.1
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHhhcCCChHHHHHHHcccCC---CCcccHHHHHHHHHhCCCCc
Q 044628 72 VSAKFGFLQQGKQLHSHIMKLGLCNKLS--LQNQVLHVYVKCKAFDDMEKLFDEMRV---RNIVTWNTLISGIINCGGNV 146 (665)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~ 146 (665)
..+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++.+..+ +..|.
T Consensus 17 ~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~-- 89 (237)
T 3b7b_A 17 AAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA-AKKGH-- 89 (237)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH-HHTTC--
T ss_pred HHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH-HHcCC--
Confidence 334556654 445555566544331 112344555567787777777765332 232333333333 33333
Q ss_pred hHHHHHhhhCC-CCCCcc--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCChHHHHHHHh
Q 044628 147 TPYFRRMLLDN-VRLDHI--TFNSLLRACVQADDIEVGRRLHSFILKVGFGLNCF--VSSALVDLYGKCGFVEDARRVFD 221 (665)
Q Consensus 147 ~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 221 (665)
.++++.+.+.| ..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...++.|..+-+..+++
T Consensus 90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 165 (237)
T 3b7b_A 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165 (237)
T ss_dssp HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 44444455544 332211 1112233334445543 344445555444321 11123333445566655555554
Q ss_pred c
Q 044628 222 E 222 (665)
Q Consensus 222 ~ 222 (665)
.
T Consensus 166 ~ 166 (237)
T 3b7b_A 166 A 166 (237)
T ss_dssp T
T ss_pred c
Confidence 4
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.04 E-value=83 Score=28.41 Aligned_cols=18 Identities=0% Similarity=-0.182 Sum_probs=9.7
Q ss_pred HHHhCCChHHHHHHHhcc
Q 044628 206 LYGKCGFVEDARRVFDEV 223 (665)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~ 223 (665)
..+..|+.+-+.-+++.-
T Consensus 99 ~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 99 IAIERRCKHYVELLVEKG 116 (260)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC
Confidence 344556666555555543
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.01 E-value=1.4e+02 Score=28.15 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCc--hHhHHHHHHHHHHhCCCCchh
Q 044628 332 WNTMVVGFGQNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI--SCETRQVHAYAIKNGVQAFLS 400 (665)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~i~~~~~~~g~~~~~~ 400 (665)
.+.++.-|...|+.++|...++++......+ .+....+..+.-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567788888888888888888885322211 2333344444544322 344556666666666544433
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.92 E-value=1.7e+02 Score=32.97 Aligned_cols=32 Identities=6% Similarity=-0.362 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC
Q 044628 535 TLGAFIGACKVHGSIGLAKWAAEKLLE-LEPSK 566 (665)
Q Consensus 535 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 566 (665)
.|..++..+..++-++.+.+..+.+++ ..+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 556666777778888888888887775 33443
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.98 E-value=1.6e+02 Score=26.12 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=36.9
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 044628 551 LAKWAAEKLLE--LEPSKPVNYALVSNVYASERCWFDVARLRKMMRDNCDH 599 (665)
Q Consensus 551 ~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 599 (665)
....+|..+.. ++-..+..|...+..|...|++.+|.++++.-..++.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 45567777754 55666777888888888999999999988887766543
No 313
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.71 E-value=83 Score=25.51 Aligned_cols=17 Identities=18% Similarity=0.004 Sum_probs=8.8
Q ss_pred HHHhCCChHHHHHHHhc
Q 044628 206 LYGKCGFVEDARRVFDE 222 (665)
Q Consensus 206 ~~~~~g~~~~A~~~~~~ 222 (665)
..++.|+.+-+.-+++.
T Consensus 107 ~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHTCHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHhc
Confidence 33445555555555544
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.65 E-value=1.7e+02 Score=30.02 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCChh--h-HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhHHHHHH
Q 044628 466 IAFLEVLSACSHGGLVSEGLRYFNLMISDYHILPDSE--H-YTCLTDLLGRVGLLVEAYDLLASM-PIEP-RSDTLGAFI 540 (665)
Q Consensus 466 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 540 (665)
..++.+++.|.+.+.+++|..+.....--....++.. . +-.+...+.-.+++.+|.+.+..+ ...| +........
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~ 311 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHH
Confidence 4577888889999999999999887742000011111 1 223455667788999998887775 2222 322211111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCHHHHHHHH
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSK-----------PVNYALVSNVYASERCWFDVARLR 590 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~A~~~~ 590 (665)
.++. -.-..+-+...-|.. ...|..|+.++ +.|++++-..+.
T Consensus 312 ~a~K-------~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L 364 (523)
T 4b4t_S 312 QSNK-------LHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTI 364 (523)
T ss_dssp HHHH-------HHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHH-------HHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 1110 012223333444431 12477788887 668777655554
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.59 E-value=2e+02 Score=25.02 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=39.3
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHcccC---CCCcccHHHHHHHHHhCCCCc
Q 044628 70 LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSLQNQVLHVYVKCKAFDDMEKLFDEMR---VRNIVTWNTLISGIINCGGNV 146 (665)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~ 146 (665)
|...+..|+++..+.++..-...--..+..- .+.+...++.|+.+-+..+++.-. .+|...++.+..+. +.|.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~-- 85 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGX-- 85 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTS-CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HHTC--
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCC-CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHH-HcCH--
Confidence 3445566777766665543221100112111 223344456677776666665432 22333334443332 2222
Q ss_pred hHHHHHhhhCCCCCC
Q 044628 147 TPYFRRMLLDNVRLD 161 (665)
Q Consensus 147 ~~~~~~m~~~g~~p~ 161 (665)
.++++.+.+.|..++
T Consensus 86 ~~~v~~Ll~~g~~~~ 100 (231)
T 3aji_A 86 DEIVKALLVKGAHVN 100 (231)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 344444555554443
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.17 E-value=2.6e+02 Score=27.46 Aligned_cols=114 Identities=7% Similarity=0.095 Sum_probs=52.0
Q ss_pred HHHHHHHhCCChHHHHHHHhccCCCCch--hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHhh--HHHHHHHHhccC
Q 044628 202 ALVDLYGKCGFVEDARRVFDEVLCRDLV--LWNVMVSCYALNCLGDGAIAVFNLMRLEGMKGDYFT--FSSLVNSCGTLG 277 (665)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 277 (665)
+.+...+..|+++-+..+++.-..++.. ...+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 3445556778888888887764433221 112334444555665433333 33344333211 112333344455
Q ss_pred CcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhc
Q 044628 278 SSKLGRQIHGLVIKQSFDLDVLV--ATSLVDMYAKNGNIDDACRVFDG 323 (665)
Q Consensus 278 ~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 323 (665)
+.+. .+.+++.|..++... ....+...++.|+.+.+..+++.
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 5543 333444454433211 11223334455666666655554
No 317
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=27.58 E-value=4.5e+02 Score=25.80 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 044628 569 NYALVSNVYASERCWFDVARLRKMM 593 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~~~m 593 (665)
.+...+++++..|+.+.|.++.+.+
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4557788999999999999999865
No 318
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=27.53 E-value=1.3e+02 Score=27.72 Aligned_cols=20 Identities=10% Similarity=-0.107 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCChHHHHHH
Q 044628 101 QNQVLHVYVKCKAFDDMEKL 120 (665)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~ 120 (665)
..+.+...+..|+.++..++
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGS 34 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHHhhcCCCCCcccC
Confidence 34555666666666655553
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.53 E-value=1.1e+02 Score=29.50 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=8.7
Q ss_pred HHhcCCHHHHHHHHhc
Q 044628 308 YAKNGNIDDACRVFDG 323 (665)
Q Consensus 308 ~~~~g~~~~A~~~~~~ 323 (665)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3455666655555553
No 320
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.46 E-value=1.4e+02 Score=26.15 Aligned_cols=20 Identities=10% Similarity=-0.140 Sum_probs=9.8
Q ss_pred HHhCCCCchHhHHHHHHHHH
Q 044628 372 SSCGSLSISCETRQVHAYAI 391 (665)
Q Consensus 372 ~~~~~~~~~~~a~~i~~~~~ 391 (665)
......|+.+.+.++.+.+.
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555443
No 321
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.29 E-value=3.5e+02 Score=25.56 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHHhhhCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 044628 149 YFRRMLLDNVRLDHITFNSLLRACVQADDIEVGRRLHSFILKVG 192 (665)
Q Consensus 149 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 192 (665)
++..+.+.|+.|..+++.-++..+++.=.++.+..+++.+...|
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 33444444555555555555555555444555555555555554
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.09 E-value=2.7e+02 Score=23.40 Aligned_cols=17 Identities=0% Similarity=0.096 Sum_probs=10.0
Q ss_pred HHhCCChHHHHHHHhcc
Q 044628 207 YGKCGFVEDARRVFDEV 223 (665)
Q Consensus 207 ~~~~g~~~~A~~~~~~~ 223 (665)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666544
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.83 E-value=1.2e+02 Score=31.13 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCh------hHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044628 501 SEHYTCLTDLLGRVGLLVEAYDLLASMPIEPRS------DTLGA-FIGACKVHGSIGLAKWAAEKLLELEPSKP 567 (665)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 567 (665)
...+++++..|...+.++.|..++.+..+.... ..|.- +......++++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 456788888888889999999998888432221 12221 22445677888888888888888877654
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.07 E-value=2.6e+02 Score=24.23 Aligned_cols=177 Identities=10% Similarity=-0.023 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhcCC
Q 044628 407 NAYSKCGSIAGALQCFGSVKEPD----LVTWTSIIGAYAFHGLSKESIEVFEKMLSHAVRPDSI---AFLEVLSACSHGG 479 (665)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g 479 (665)
...++.|+.+-+..+++.-...+ ...++.+ ...+..|+.+ +++.+.+.|..++.. ..+.+..+ +..|
T Consensus 47 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~ 120 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL-HWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLA-AQFG 120 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH-HHTT
T ss_pred HHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh-HHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH-HHcC
Confidence 34455566666555555443211 1112222 2333445433 344455556555432 22223333 3345
Q ss_pred cHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHhCCCCCChh---HHHHHHHHHHhcCCHHHHH
Q 044628 480 LVSEGLRYFNLMISDYHILPDS---EHYTCLTDLLGRVGLLVEAYDLLASMPIEPRSD---TLGAFIGACKVHGSIGLAK 553 (665)
Q Consensus 480 ~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~ 553 (665)
..+-...++ + .|..++. ...+.+.. .+..|...+..+++.+.+..++.. .-.+.+......|+.+..+
T Consensus 121 ~~~~~~~Ll----~-~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 121 HTSIVAYLI----A-KGQDVDMMDQNGMTPLMW-AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp CHHHHHHHH----H-TTCCTTCCCTTSCCHHHH-HHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHH----h-cCCCccccCCCCCcHHHH-HHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence 554333333 3 2433332 22223322 233455555666666653333211 1123344555677887776
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 044628 554 WAAEKLLELEPSKPVNYALVSNVYASERCWFDVARLRKMMRDN 596 (665)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 596 (665)
.+++.-...+..+..... -...-.+.|+.+-+.-+.+...+.
T Consensus 195 ~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 195 LLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhhcc
Confidence 666653222222211111 223335667776666666655443
No 325
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.01 E-value=2e+02 Score=21.18 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCChHHHHHHHhccCCCCchhHHHHHHHHHhcCCch
Q 044628 181 GRRLHSFILKVGFGLNCFVSSALVDLYGKCGFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGD 245 (665)
Q Consensus 181 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 245 (665)
...+++.+.+.|+-. ..-+..+- +.....+.|.++++.++.++..+|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345777777777543 22222222 23577889999999999888889999999888877643
No 326
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.96 E-value=3.3e+02 Score=23.68 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044628 436 IIGAYA---FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480 (665)
Q Consensus 436 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 480 (665)
+|+++. +-.+.+.|+-.+-+|++.| .|..+.-..++.+...-|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 455553 4578999999999999999 7766666666666666654
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.42 E-value=1.1e+02 Score=27.55 Aligned_cols=89 Identities=8% Similarity=-0.066 Sum_probs=43.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHhh-------HHHHHHHHh--ccCCcHHHHHHHHHHHHhC---------CC-C
Q 044628 236 SCYALNCLGDGAIAVFNLMRLEGMKGDYFT-------FSSLVNSCG--TLGSSKLGRQIHGLVIKQS---------FD-L 296 (665)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~-~ 296 (665)
...++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+.+..+++.-...+ +. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 334556666666666666555554444222 233333332 5566666666665543311 00 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 044628 297 DVLVATSLVDMYAKNGNIDDACRVFDGMT 325 (665)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 325 (665)
|..-.+ .+...+..|+.+-+..+++.-.
T Consensus 90 d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 90 YYRGQT-ALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SEESBC-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccCCCC-HHHHHHHcCCHHHHHHHHhCCC
Confidence 001112 2333456677777766666433
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.18 E-value=1.4e+02 Score=24.29 Aligned_cols=33 Identities=3% Similarity=0.050 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044628 446 SKESIEVFEKMLSHAVRPDSIAFLEVLSACSHG 478 (665)
Q Consensus 446 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 478 (665)
.-.|.++++.+.+.+...+..|....|..+...
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 333444444444433333333433333333333
No 329
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.82 E-value=92 Score=23.41 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHHHH
Q 044628 312 GNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREAVK 350 (665)
Q Consensus 312 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 350 (665)
...+.|.++++.++.+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468888999999988888889999998887777665543
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.66 E-value=2.6e+02 Score=24.25 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=35.2
Q ss_pred HHHHHHH---cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCc
Q 044628 334 TMVVGFG---QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI 379 (665)
Q Consensus 334 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 379 (665)
-+|+++. +..+.+.|+-.+.+|++.|-.|..+.-..++-+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3555554 468999999999999999988887777777777655554
No 331
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.46 E-value=4.5e+02 Score=24.79 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=57.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhCCCCchHhHHHHHHHHHHhCCCCchhHHHHHHHHH----HhcCCHHHHHHHHhc-
Q 044628 350 KLLRDMLQGSFCPDEVTLASILSSCGSLSISCETRQVHAYAIKNGVQAFLSIENALINAY----SKCGSIAGALQCFGS- 424 (665)
Q Consensus 350 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~- 424 (665)
++++.+.+.|+.|..+++..++..+++.=.++.+..+++.+...|...-..+.-+++..+ .++.+.++....++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 455666777888888888888888888878899999999888887664444444444332 234567777777766
Q ss_pred CCCCChhHHHHHH
Q 044628 425 VKEPDLVTWTSII 437 (665)
Q Consensus 425 ~~~~~~~~~~~li 437 (665)
....+......++
T Consensus 289 ~p~~~~~di~~li 301 (331)
T 3qye_A 289 LPNLGLVQMEKTI 301 (331)
T ss_dssp TTCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3333333334444
No 332
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.01 E-value=1.9e+02 Score=29.50 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=31.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 044628 541 GACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYASERCWFDVAR 588 (665)
Q Consensus 541 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 588 (665)
...+.....+.|...|.++..+.|++...|+.|+-+....|+.-+|.=
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH
Confidence 334444556677777777777777777777777777776666655543
No 333
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=23.63 E-value=2.1e+02 Score=24.63 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=22.5
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHhhcCCChHHHHHHHcc
Q 044628 70 LKVSAKFGFLQQGKQLHSHIMKLGLCNKLSL--QNQVLHVYVKCKAFDDMEKLFDE 123 (665)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~ 123 (665)
|...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 29 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 29 LHLAARYSRSD----AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33444556644 3344445554443211 11233344455666555555543
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.58 E-value=2.2e+02 Score=23.14 Aligned_cols=13 Identities=8% Similarity=-0.100 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhC
Q 044628 281 LGRQIHGLVIKQS 293 (665)
Q Consensus 281 ~a~~~~~~~~~~g 293 (665)
.|.++++.+.+.+
T Consensus 39 sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 39 TADDIYKALEGKF 51 (145)
T ss_dssp CHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHhC
Confidence 3444444444333
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.03 E-value=3.1e+02 Score=24.05 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=44.4
Q ss_pred hHHHHHHHHH---cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCCCc-----hHhHHHHHHHHHHhCC
Q 044628 331 SWNTMVVGFG---QNGDGREAVKLLRDMLQGSFCPDEVTLASILSSCGSLSI-----SCETRQVHAYAIKNGV 395 (665)
Q Consensus 331 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~i~~~~~~~g~ 395 (665)
.+--+|+++. +..+.+.|+-.+.+|++.|-.|....-..++-+....|. +..+...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444566664 468999999999999999988888777777777665554 3334444444444454
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.94 E-value=2e+02 Score=23.56 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=23.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044628 435 SIIGAYAFHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480 (665)
Q Consensus 435 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 480 (665)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|.
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3444444444455555566655555444455555455555554443
No 337
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.84 E-value=3.4e+02 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044628 436 IIGAYA---FHGLSKESIEVFEKMLSHAVRPDSIAFLEVLSACSHGGL 480 (665)
Q Consensus 436 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 480 (665)
+|+++. +-.+.+.|+-.+-+|++.|-.|..+.-..++.+...-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 455554 457899999999999999888877766666666655553
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.61 E-value=96 Score=23.30 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=29.8
Q ss_pred CChHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHH
Q 044628 211 GFVEDARRVFDEVLCRDLVLWNVMVSCYALNCLGDGAI 248 (665)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 248 (665)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655443
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.52 E-value=4.3e+02 Score=23.83 Aligned_cols=17 Identities=6% Similarity=-0.212 Sum_probs=6.5
Q ss_pred CchhHHHHHHHHHHhcC
Q 044628 296 LDVLVATSLVDMYAKNG 312 (665)
Q Consensus 296 ~~~~~~~~li~~~~~~g 312 (665)
++..+-...+.+..+.|
T Consensus 140 ~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIN 156 (280)
T ss_dssp SCHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 34444334444444433
No 340
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.00 E-value=3.6e+02 Score=22.82 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH--hcC----------------CCCCc
Q 044628 507 LTDLLGRVGLLVEAYDLLASMPIEPRSDTLGAFIGACKVHGSIGLAKWAAEKLL--ELE----------------PSKPV 568 (665)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~----------------p~~~~ 568 (665)
+--.+.-.|.+..++-++.... ...+.-|.+| ++.+.+++..|+..++.++ +.+ -+..-
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhhhhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 044628 569 NYALVSNVYASERCWFDVARLRKM 592 (665)
Q Consensus 569 ~~~~l~~~y~~~g~~~~A~~~~~~ 592 (665)
.|..++.++...|+.+||++.+..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
No 341
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.71 E-value=3.4e+02 Score=22.37 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 044628 447 KESIEVFEKMLSHAVRPDSI-AFLEVLSACSHGGLVSEGLRYFNLMISDYHILP 499 (665)
Q Consensus 447 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 499 (665)
+++.++|..|...||--... -|......+...|++++|.++|+.-++ .+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 34778888888877766553 455555666777888888888887776 34445
No 342
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.70 E-value=4e+02 Score=23.12 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=36.7
Q ss_pred hHHHHHHHHhCCCCCCh--hHHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 044628 517 LVEAYDLLASMPIEPRS--DTLGAF-----IGACKVHGSIGLAKWAAEKLLELEPSKPVNYALVSNVYA 578 (665)
Q Consensus 517 ~~~A~~~~~~~~~~p~~--~~~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 578 (665)
++.|+.+++.+.-.-|. .....| +..|.+.|.+++|.+++++.++..+.+...-.-|..+-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 57788888888322221 112222 356999999999999999999888776554444444433
No 343
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.50 E-value=3.1e+02 Score=26.13 Aligned_cols=140 Identities=7% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCC---CchhHHHHHHHHHh-cCCchHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 044628 201 SALVDLYGKCGFVEDARRVFDEVLCR---DLVLWNVMVSCYAL-NCLGDGAIAVFNLMRLEGMKGDYFTFSSLVNSCGTL 276 (665)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 276 (665)
..++.=|...|+.++|.+.++++..| ..+....+..++-+ ....+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred C----CcHHHHHHHHHHHHh----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHcCCChHHH
Q 044628 277 G----SSKLGRQIHGLVIKQ----SFDLDVLVATSLVDMYAKNGNIDDACRVFDGMTAKNVVSWNTMVVGFGQNGDGREA 348 (665)
Q Consensus 277 ~----~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 348 (665)
. |+..|...+..++.. |.-|-....+.+...+...|........ .+..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~--------------vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLE--------------ILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHH--------------HHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHH--------------HHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 044628 349 VKLLRD 354 (665)
Q Consensus 349 ~~~~~~ 354 (665)
.++|++
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 344
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.16 E-value=2.6e+02 Score=25.26 Aligned_cols=17 Identities=6% Similarity=-0.023 Sum_probs=10.4
Q ss_pred HHhcCCHHHHHHHHhcc
Q 044628 308 YAKNGNIDDACRVFDGM 324 (665)
Q Consensus 308 ~~~~g~~~~A~~~~~~~ 324 (665)
.++.|+.+-+..+++.-
T Consensus 108 A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 108 AIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHCC
Confidence 34566777666666653
No 345
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=20.06 E-value=63 Score=16.05 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhC
Q 044628 580 ERCWFDVARLRKMMRDN 596 (665)
Q Consensus 580 ~g~~~~A~~~~~~m~~~ 596 (665)
..+++.|..++.+|.++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46789999999888765
Done!