Query 044630
Match_columns 343
No_of_seqs 290 out of 1899
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.8 3.7E-20 1.3E-24 182.8 16.0 295 2-330 21-332 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 3.8E-18 1.3E-22 166.9 17.7 173 2-202 22-200 (491)
3 3o7q_A L-fucose-proton symport 99.5 5.3E-14 1.8E-18 134.9 13.7 153 13-196 45-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.5 2.2E-13 7.4E-18 131.0 11.4 151 12-195 47-203 (451)
5 2gfp_A EMRD, multidrug resista 99.4 1.4E-13 4.7E-18 129.7 4.6 155 7-193 14-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.3 1.3E-11 4.6E-16 118.4 14.2 166 4-198 263-433 (451)
7 3o7q_A L-fucose-proton symport 99.3 1E-10 3.4E-15 111.9 15.9 158 4-195 269-429 (438)
8 4gc0_A D-xylose-proton symport 99.1 3.5E-10 1.2E-14 110.0 10.3 152 28-192 54-214 (491)
9 2cfq_A Lactose permease; trans 99.0 2.5E-10 8.5E-15 109.6 7.3 158 9-197 236-398 (417)
10 2cfq_A Lactose permease; trans 98.9 3.2E-11 1.1E-15 115.8 -3.0 158 7-192 21-181 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.9 2.3E-09 7.9E-14 104.3 9.0 170 7-201 297-474 (491)
12 4gc0_A D-xylose-proton symport 98.8 1.4E-07 4.9E-12 91.4 17.2 166 18-217 301-476 (491)
13 2gfp_A EMRD, multidrug resista 98.5 1.1E-08 3.9E-13 95.8 -1.2 153 4-187 210-365 (375)
14 2xut_A Proton/peptide symporte 97.4 3.6E-05 1.2E-09 75.1 1.2 90 106-202 405-506 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=3.7e-20 Score=182.85 Aligned_cols=295 Identities=19% Similarity=0.231 Sum_probs=183.0
Q ss_pred chhhhHHhhhhhHHHHHHhhHhcC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 044630 2 ETFERLGSFGIMAIFTVYLLNEYN------VSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVT 75 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~lg------~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~ 75 (343)
++++++++|++...++.|+++++| ++..+++.+.+++.++..++.+++|+++||++|||+++.++.++..+...
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 468899999999999999999999 99999999999999999999999999999944999999888722222122
Q ss_pred HHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH
Q 044630 76 LTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY 155 (343)
Q Consensus 76 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y 155 (343)
+..+.+ .+.+.+++++++.|+ |.|...++..++++|.+++++ +..+.+.+++++
T Consensus 101 ~~~~~~----------------------~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 154 (524)
T 2xut_A 101 FLAIFE----------------------HSVQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFY 154 (524)
T ss_dssp HHHHTS----------------------SCHHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHH
T ss_pred HHHHhc----------------------ccHHHHHHHHHHHHH-hccccchhHHHHHHHHcCccc---hHHHHHHHHHHH
Confidence 222211 135678888999999 999999999999999998653 223467788899
Q ss_pred HHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHHHHHHHHHhhcccccCCC
Q 044630 156 TTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG 234 (343)
Q Consensus 156 ~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~ 234 (343)
.+.++|.++++.+.+++.+ .||+..|.+.++..+++++.++..++++++.+|++++..+..+.+..+.|+++...+. .
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 233 (524)
T 2xut_A 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGN-I 233 (524)
T ss_dssp HHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCc-c
Confidence 9999999999999999988 8999999999888877777666655555444444444334444444444443211000 0
Q ss_pred CcccccCCcccccCCcCCCCchhhhhhhhhhhcc--CcccccccCCCCCCC-------ccccchhHHHHHHHHhHHHHHH
Q 044630 235 DGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIID--NNDEIKQDGICMNPR-------RLCSIQQVEEVNWLMIIVPIWA 305 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~--~~~~~~~~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~ 305 (343)
. ...+............+. +....+..+.... ..+. ....+| +.++++++++.|++++.+++++
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (524)
T 2xut_A 234 G-LVLALIGGVSAAYALVNI-PTLGIVAGLCCAMVLVMGF-----VGAGASLQLERARKSHPDAAVDGVRSVLRILVLFA 306 (524)
T ss_dssp H-HHHHHHHHHHHHHTGGGT-TTTCSSHHHHHHHHHHHHH-----HHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHT
T ss_pred c-hhhhhhhhhhhhhhhccc-chhhhhhhhhhhhhhhhcc-----cccchhhHHhhhhccccHhHHHHHHHHHHHHHHHH
Confidence 0 000000000000000000 0000000000000 0000 000112 1112334566788888899999
Q ss_pred HHHHHHHhh-cchhHHHHHHHhcccC
Q 044630 306 SAIISFLPM-QIGTFVVGQAMRMDRH 330 (343)
Q Consensus 306 ~~i~f~~~~-Q~~t~~~~qa~~md~~ 330 (343)
....++..+ |..+.+..++.++|.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
T 2xut_A 307 LVTPFWSLFDQKASTWILQANDMVKP 332 (524)
T ss_dssp TSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhccchhhHHhHHhcCCC
Confidence 999999999 9888888888777654
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.78 E-value=3.8e-18 Score=166.85 Aligned_cols=173 Identities=21% Similarity=0.333 Sum_probs=144.6
Q ss_pred chhhhHHhhhhhHHHHHHhhHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 044630 2 ETFERLGSFGIMAIFTVYLLNE-----YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTL 76 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~ 76 (343)
.++++++||++..+++.|++++ +|++..+++.+.+.+.++..++.+++|+++||++|||+++.++.++..+...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998 99999999999999999999999999999999339999999987222222222
Q ss_pred HhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH
Q 044630 77 TAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT 156 (343)
Q Consensus 77 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~ 156 (343)
.++.+ +.+.+++++++.|+ |.|...+...++++|.+++++ +.|+.++++++.
T Consensus 102 ~~~~~-----------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~ 153 (491)
T 4aps_A 102 LALPF-----------------------GASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVF 153 (491)
T ss_dssp HHSCC-----------------------STTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHH
T ss_pred HHHhh-----------------------hHHHHHHHHHHHHH-HHHhccchHHHHHHHHcCccc----ccceeeehHHHH
Confidence 22211 35678889999999 999999999999999998653 247889999999
Q ss_pred HHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceE
Q 044630 157 TFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIY 202 (343)
Q Consensus 157 ~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~ 202 (343)
+.++|..++|.+++++.+ .||++.|.+.++..++++++++...+++
T Consensus 154 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999988 9999999998888777777666554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=5.3e-14 Score=134.92 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=122.3
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCC
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~ 89 (343)
...+..++.+++|++..+.+.+.+.+..+..++.+++|+++||+ |||+++.++. .++.++.......+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~-------- 115 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM-------- 115 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc--------
Confidence 34444567788999999999999999999999999999999995 9999999987 33333322112212
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
+.+.+++++++.|+ |.|...+...++++|.+++++ |++.++++..+.++|.++++.+.
T Consensus 116 ---------------~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 116 ---------------NYTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp ---------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------cHHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999 999999999999999998653 88889999999999999999999
Q ss_pred heee-e-cc-------------------------ccccchhHHHHHHHHHHHHH
Q 044630 170 AYVQ-T-VS-------------------------WAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 170 ~~l~-~-~g-------------------------w~~~F~i~~~~~~l~~~~~~ 196 (343)
+++. + .+ |++.|.+.++..++..++++
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9987 5 43 99999776665554444443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=2.2e-13 Score=130.98 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=119.7
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhh-cCCCCCCC
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAI-VPQLRPPH 87 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~-~~~~~~~~ 87 (343)
+...++ ++.+++ ++..+.+.+.+++.++..++.+++|+++||+ |||+++.++. .++.++..+... .+
T Consensus 47 ~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~------ 117 (451)
T 1pw4_A 47 FALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------ 117 (451)
T ss_dssp HHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS------
T ss_pred HHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc------
Confidence 334444 444567 9999999999999999999999999999995 9999999887 233332222000 12
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
+.+.+++++++.|+ |.|...+...++++|.++++ +|++.++++..+.++|.++++.
T Consensus 118 -----------------~~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 118 -----------------SIAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp -----------------SSSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHH
T ss_pred -----------------cHHHHHHHHHHHHH-HhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999 99999999999999999754 3899999999999999999999
Q ss_pred hhheeee-cc-ccccchhHHHHHHHHHHHH
Q 044630 168 IVAYVQT-VS-WAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 168 ~~~~l~~-~g-w~~~F~i~~~~~~l~~~~~ 195 (343)
+++++.+ .| |++.|.+.+++.++..++.
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9998777 88 9999999887766554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.39 E-value=1.4e-13 Score=129.72 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=122.8
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
++.......++. +.+++|.+..+.+.+.+.+.....++.+++|+++||+ |||+++.++..+..+...+....
T Consensus 14 ~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------ 85 (375)
T 2gfp_A 14 MAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTT------ 85 (375)
T ss_dssp HHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHh------
Confidence 334444444444 4567999999999999999999999999999999995 99999998872222111122111
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
.+.+.+++++++.|+ +.+...+...+++.|.+++++ |++.++++..+.++|..+++
T Consensus 86 -----------------~~~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 86 -----------------SSLTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAP 141 (375)
T ss_dssp -----------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHH
T ss_pred -----------------ccHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhH
Confidence 146778889999999 999999999999999987543 78888999999999999999
Q ss_pred hhhheeee-ccccccchhHHHHHHHHHH
Q 044630 167 TIVAYVQT-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 167 ~~~~~l~~-~gw~~~F~i~~~~~~l~~~ 193 (343)
.+.+++.+ .||+..|.+.++..++..+
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 142 LIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999988 8999999988877665554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=1.3e-11 Score=118.36 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=132.5
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHH-HHHHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYI--GKFVTIVLGFLLGM-LMVTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~l--Gr~~~i~~~~~~g~-~~l~~~~~~ 80 (343)
+..++++++..+++.|+++.+|++..+++.+.+...++..++.+++|+++|| + |||+.+.++..+.. +.+.+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 4456778889999999999999999999999999999999999999999999 7 99988877762222 222222111
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+ ..+.+.+.+..++.|+ +.++..+...++..|.++++ .|++++++++...++
T Consensus 342 ~---------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 342 P---------------------AGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYL 393 (451)
T ss_dssp C---------------------TTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTT------HHHHHHHHHHHHHHH
T ss_pred c---------------------ccCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchh------hhhhHHHHHHHHHHH
Confidence 1 1134566677778888 88888888889999998764 389999999999999
Q ss_pred -HHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhc
Q 044630 161 -VLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 161 -G~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
|..+++.+.+++.+ .||+..|.+.+++.+++.+..+..
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 899999999888877776665543
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.25 E-value=1e-10 Score=111.93 Aligned_cols=158 Identities=8% Similarity=0.021 Sum_probs=118.2
Q ss_pred hhhHHhhhhhHHHHHH-hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVY-LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~y-l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
+...+++++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+.+.++.++..+.+.+....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~- 346 (438)
T 3o7q_A 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC-
Confidence 3445677888999999 888889999999999999999999999999999999 5999999888733333222222211
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+ ......+.++ +.+...|...++..|.++++ ++.+.++.. ...+|+
T Consensus 347 ----------------------~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~ 394 (438)
T 3o7q_A 347 ----------------------GHV-GLIALTLCSA-FMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGG 394 (438)
T ss_dssp ----------------------HHH-HHHHHHHHHH-HHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHH
T ss_pred ----------------------CcH-HHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHH
Confidence 122 3344577888 88888999999988888632 334444443 566999
Q ss_pred HHHHhhhheeee-cc-ccccchhHHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQT-VS-WAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 163 ~ig~~~~~~l~~-~g-w~~~F~i~~~~~~l~~~~~ 195 (343)
.++|.+.|++.+ .| ++..|.+.+++.++.++..
T Consensus 395 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999 77 9999998777665554433
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.07 E-value=3.5e-10 Score=110.04 Aligned_cols=152 Identities=7% Similarity=-0.026 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHH
Q 044630 28 QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLA 107 (343)
Q Consensus 28 ~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 107 (343)
....+.+.+.+.++..++++++|+++||+ |||+++.++.++-.+.-.++++.+..... +. ....-...-..+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~-~~----~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS-IN----PDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC-SS----SSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh-hc----chhHHHHHHhhhHH
Confidence 34566778888999999999999999995 99999999872222211222221210000 00 00000000013578
Q ss_pred HHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee---------cccc
Q 044630 108 FLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT---------VSWA 178 (343)
Q Consensus 108 ~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~---------~gw~ 178 (343)
.++++|++.|+ |.|+..+..+.+++|..|++ .|++..+++..+..+|.+++..+...+.. .+|+
T Consensus 128 ~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 128 EFVIYRIIGGI-GVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 89999999999 99999999999999998753 37888888888888888888776554332 3467
Q ss_pred ccchhHHHHHHHHH
Q 044630 179 WGFTIPTVCLFCGL 192 (343)
Q Consensus 179 ~~F~i~~~~~~l~~ 192 (343)
..+.+..+..++.+
T Consensus 201 ~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 201 YMFASECIPALLFL 214 (491)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHhhhhhhhhhhhh
Confidence 77766665544433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.03 E-value=2.5e-10 Score=109.61 Aligned_cols=158 Identities=5% Similarity=-0.012 Sum_probs=106.5
Q ss_pred hhhhhHHHHHHhhHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVS---QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s---~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
|+.....++.|+.+.++.. ....+...++..+...++.+++|+++||+ |||+++.++..+..+.+.+.++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~---- 310 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT---- 310 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3444456778887766532 33445555556666778889999999995 999998877622222222222211
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHH-HHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWY-YTTFTLVLLI 164 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~-y~~~~iG~~i 164 (343)
+.+.+.+...+.++ +.+...+...++.+|.+|++ .|++.+++. ..+.++|+.+
T Consensus 311 -------------------~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 311 -------------------SALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp -------------------SHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHH
T ss_pred -------------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHH
Confidence 23344445555566 55555566678899988743 478888884 5677899999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+|.+.|++.+ .|++..|.+.+++.+++.++.+.
T Consensus 365 gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988 88888998888877777665544
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.94 E-value=3.2e-11 Score=115.83 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=100.6
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHH--HHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL-LGM--LMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~-~g~--~~l~~~~~~~~~ 83 (343)
+++..+.+.++.|+++++|++..+++.+.+.+..+..++.+++|+++||+ ||||++.++.. .+. ..+......+.
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~- 98 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL- 98 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455567899999999999999999999999999999999999999995 99999998762 111 11111111000
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
....+..++.+.++ +.|...+...+...+..++ ..+.++..++......++|..
T Consensus 99 ---------------------~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 99 ---------------------LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEK----VSRRSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp ---------------------HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHH----HHHHHTCCHHHHSSSTTTHHH
T ss_pred ---------------------HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH----hhhhcccchHHHHHHHHHHHH
Confidence 00001223333334 4443333333333333221 112345556666667789999
Q ss_pred HHHhhhheeeeccccccchhHHHHHHHHH
Q 044630 164 ITSTIVAYVQTVSWAWGFTIPTVCLFCGL 192 (343)
Q Consensus 164 ig~~~~~~l~~~gw~~~F~i~~~~~~l~~ 192 (343)
++|.+++++.+.+|+..|.+.++..++.+
T Consensus 153 ~~~~l~~~l~~~~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 153 LGASIVGIMFTINNQFVFWLGSGCALILA 181 (417)
T ss_dssp HHHHHHHHHHHHCSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 99999988877789999987766544333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.91 E-value=2.3e-09 Score=104.27 Aligned_cols=170 Identities=11% Similarity=0.029 Sum_probs=119.7
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-----HHH---HHHHHHHHHHh
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIV-----LGF---LLGMLMVTLTA 78 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~-----~~~---~~g~~~l~~~~ 78 (343)
..+......++.|+.+.++.+..+++...........++.++.|+++||+ |||+... ++. .++.+++....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888999998888877777788888888889999999999994 9886543 333 12222211111
Q ss_pred hcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH
Q 044630 79 IVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF 158 (343)
Q Consensus 79 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~ 158 (343)
.... .....+.+.+.+...+.++ |.+...+...++..|.+|++. |+++.++++...
T Consensus 376 ~~~~-----------------~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 431 (491)
T 4aps_A 376 ALYG-----------------TSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSS 431 (491)
T ss_dssp HHCC-----------------CCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHH
T ss_pred HhcC-----------------CCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 0000 0001234566677788899 999999999999999998653 788889999999
Q ss_pred HHHHHHHHhhhheeeeccccccchhHHHHHHHHHHHHHhccce
Q 044630 159 TLVLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 159 ~iG~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
++|..+++.+.+++.+.++...|.+.+++.+++.++++...++
T Consensus 432 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 432 SVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887667778887777777666666555444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.80 E-value=1.4e-07 Score=91.42 Aligned_cols=166 Identities=11% Similarity=0.083 Sum_probs=105.7
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
.++.+..+.+................++.++++++.||+ |||+.++.+. . ++.+.+..... ..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~-~~------------ 366 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ------------ 366 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHH-TT------------
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHh-cc------------
Confidence 344556788888777777777888889999999999995 9999998877 2 22222222211 10
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT 174 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~ 174 (343)
.........+.++..+. +. +..|....+.+|.||.+ .|+++.++.+...++|+++++.+.+++.+
T Consensus 367 -------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~E~fPt~------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 367 -------APGIVALLSMLFYVAAF-AM-SWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp -------CCHHHHHHHHHHHHHHH-HT-TTTHHHHHHHHHSSCTT------THHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred -------cchHHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHhCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222222222233 32 34466678999999875 38999999999999999998888776643
Q ss_pred -------ccccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHH
Q 044630 175 -------VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQ 217 (343)
Q Consensus 175 -------~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~ 217 (343)
.++...|.+.+++.+++.+..++..| +.+|.++-++.+
T Consensus 432 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P-----ETkg~tLeei~~ 476 (491)
T 4gc0_A 432 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP-----ETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC-----CCTTCCHHHHGG
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec-----CCCCCCHHHHHH
Confidence 34566677777666666555444333 235666666543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.47 E-value=1.1e-08 Score=95.77 Aligned_cols=153 Identities=14% Similarity=-0.021 Sum_probs=110.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHhhcC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF--LLGMLMVTLTAIVP 81 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~--~~g~~~l~~~~~~~ 81 (343)
+..++++++..+++.|+++.+|++..+++.+......+..++.++.|+++||+ ||+..+.... ..+..++..... +
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 287 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQSVICCLLAGLLMWIPDWF-G 287 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHHHHTSSSSSHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh-c
Confidence 34456777778888899888999999999999999988889999999999994 7722221111 111111011100 0
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
..+.+.+++...+.++ +.|...+...++..|.+| + .|++.++.+....++|
T Consensus 288 ---------------------~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p-~------~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 288 ---------------------VMNVWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-F------LAGTAGALVGGLQNIG 338 (375)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH-HHHHTSSTTHHHHHTHHH-H------HHHHHHHHHHHHHHHH
T ss_pred ---------------------cccHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhCC-c------ccchHHHHHHHHHHHH
Confidence 0134556667778888 999999999999999875 2 3899999999999999
Q ss_pred HHHHHhhhheeee-ccccccchhHHHH
Q 044630 162 LLITSTIVAYVQT-VSWAWGFTIPTVC 187 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~~~F~i~~~~ 187 (343)
..+++.+.+++.+ .+|...+.+.++.
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 9999999999887 7888777764443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.38 E-value=3.6e-05 Score=75.14 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-c--cc-----
Q 044630 106 LAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V--SW----- 177 (343)
Q Consensus 106 ~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~--gw----- 177 (343)
.+.+.++.++.++ |.+...+...++..|..|++. |+++.++++...++|..+++.+.+++.+ . +|
T Consensus 405 ~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 405 IFWQILPYALLTF-GEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp SHHHHHHHHHHHH-HHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4556677788899 999999999999999998653 7889999999999999999999998876 2 34
Q ss_pred ----cccchhHHHHHHHHHHHHHhccceE
Q 044630 178 ----AWGFTIPTVCLFCGLVLLFAGMRIY 202 (343)
Q Consensus 178 ----~~~F~i~~~~~~l~~~~~~~~~~~~ 202 (343)
+..|.+.+++.+++.++++...+++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2336666666666666665544443
Done!