BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044631
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 2 ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
+ S S YEVFL+FRG DTR+ FT +LY L KI TF DD+EL +G EI P LL A
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRA 86
Query: 62 IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNG-QIIIPVFYGVSPSDVRHQNGTFG 120
I SKI V I S YA SKWCL EL +I+ + + +II+P+FY V PSDVRHQ G +
Sbjct: 87 IDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYK 146
Query: 121 DRFDELKKQFE 131
F + +F+
Sbjct: 147 KAFRKHANKFD 157
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 3 SSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62
SS ++ Y+VFL+FRG DTR +F +LY +L + I+TF DD+EL G SP L + I
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPI 60
Query: 63 QGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDR 122
+ S+ +VV+ S++YA+S WCL+ELV I++ + ++P+FYGV P+ VR Q G ++
Sbjct: 61 EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120
Query: 123 F 123
F
Sbjct: 121 F 121
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 2 ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
A +S+ +++F++ ED + F L L + + DD LR GD + ++
Sbjct: 13 ADLTSAPPHDIFISHAWED-KADFVEALAHTL-RAAGAEVWYDDFSLRPGDSLRRSIDKG 70
Query: 62 IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGD 121
+ S+ +V+ S + +W EL + + +++ I+P+++ VS +V + T D
Sbjct: 71 LGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
Query: 122 RF 123
+
Sbjct: 131 KL 132
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 80 KWCLNELVKILECKNTNGQIIIPVFYG-VSPSDVRHQN 116
K C N+L ++E + QI+ P+ G V PS VR N
Sbjct: 242 KQCRNDLAGVVEVGGASAQIVFPLQEGTVLPSSVRAVN 279
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 75 DYASSKWCLNELVKILECKNTNGQIIIPVFYGVS-PSDVRHQN 116
D K C N+LV ++E + QI+ P+ G + PS +R N
Sbjct: 237 DEYGMKQCRNDLVGVVEVGGASTQIVFPLQDGTALPSSIRAVN 279
>pdb|3N54|B Chain B, Crystal Structure Of The Gerbc Protein
Length = 350
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 42 FIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCL--NELVKILECKNTNGQI 99
FI D+ELRR + A NA +F+K + + + +L+ + NG+I
Sbjct: 94 FIRDDELRRSSYLMAARGNAAD-------VFTKGNPNQQQPMPSEKLIDLTTHSGYNGKI 146
Query: 100 IIPVFYGVSPSDVRHQNG 117
+IP+ G + V QNG
Sbjct: 147 MIPLRIGR--ASVYSQNG 162
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 77 ASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTF 119
A+ + L ++I + + N Q ++P + SP D + Q G F
Sbjct: 527 AAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRDYKGQIGAF 569
>pdb|3DMY|A Chain A, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
E.Coli
pdb|3DMY|B Chain B, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
E.Coli
Length = 480
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 87 VKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDE 125
+KI+ G+ + +F G +P+ R +N F DE
Sbjct: 188 LKIVNAXKATGKPTVALFLGYTPAVARDENVWFASSLDE 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,340,890
Number of Sequences: 62578
Number of extensions: 177433
Number of successful extensions: 412
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 11
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)