Query 044631
Match_columns 136
No_of_seqs 134 out of 1062
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:44:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 7.1E-44 2.4E-48 261.4 8.8 127 1-129 1-127 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 4E-43 1.4E-47 262.0 7.3 123 9-132 35-158 (204)
3 3h16_A TIR protein; bacteria T 100.0 6.8E-36 2.3E-40 214.3 3.4 117 8-126 19-135 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 5.1E-29 1.7E-33 177.6 6.0 107 6-114 7-114 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.9E-27 6.6E-32 169.7 1.0 103 8-113 4-111 (149)
6 2js7_A Myeloid differentiation 99.9 1E-26 3.4E-31 167.9 4.0 100 7-108 14-116 (160)
7 2j67_A TOLL like receptor 10; 99.9 2.3E-26 8E-31 168.7 4.0 105 8-114 34-142 (178)
8 1t3g_A X-linked interleukin-1 99.9 8.7E-26 3E-30 162.9 6.8 100 9-109 2-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 3.3E-20 1.1E-24 160.8 6.4 98 8-107 669-772 (844)
10 1eiw_A Hypothetical protein MT 98.4 6E-07 2E-11 60.7 5.9 72 9-105 4-75 (111)
11 3hyn_A Putative signal transdu 97.6 0.00041 1.4E-08 50.5 8.6 105 10-120 6-133 (189)
12 2f62_A Nucleoside 2-deoxyribos 94.9 0.24 8.3E-06 34.9 9.0 76 23-103 26-104 (161)
13 2khz_A C-MYC-responsive protei 91.5 1.6 5.5E-05 30.5 8.8 88 1-93 3-103 (165)
14 3ehd_A Uncharacterized conserv 87.2 2.7 9.1E-05 29.6 7.1 77 23-104 19-104 (162)
15 4fyk_A Deoxyribonucleoside 5'- 86.4 2.6 9E-05 29.3 6.7 66 23-93 18-94 (152)
16 2yvq_A Carbamoyl-phosphate syn 76.5 3.9 0.00013 27.8 4.5 63 12-77 27-107 (143)
17 1s2d_A Purine trans deoxyribos 74.7 13 0.00044 26.0 7.0 75 23-103 22-115 (167)
18 2jug_A TUBC protein; docking d 64.1 6.6 0.00023 23.8 3.1 40 26-66 7-49 (78)
19 1f8y_A Nucleoside 2-deoxyribos 54.8 24 0.00081 24.3 5.1 76 23-104 18-113 (157)
20 1evl_A Threonyl-tRNA synthetas 52.8 19 0.00064 28.2 4.8 58 8-71 297-355 (401)
21 1byr_A Protein (endonuclease); 51.6 17 0.0006 23.8 3.9 37 24-62 14-50 (155)
22 1wu7_A Histidyl-tRNA synthetas 51.5 21 0.00071 28.2 4.9 57 9-71 332-389 (434)
23 3ikl_A DNA polymerase subunit 48.5 28 0.00095 28.4 5.2 46 9-55 348-398 (459)
24 2i4l_A Proline-tRNA ligase; al 47.7 18 0.00063 29.0 4.0 47 8-55 364-412 (458)
25 1nj1_A PROR, proline-tRNA synt 45.0 22 0.00074 29.1 4.1 47 8-55 313-363 (501)
26 4a8j_B Elongator complex prote 44.2 80 0.0027 23.9 6.8 65 37-106 67-137 (270)
27 1htt_A Histidyl-tRNA synthetas 43.6 21 0.00073 27.9 3.8 58 8-71 326-386 (423)
28 2h1v_A Ferrochelatase; rossman 43.0 70 0.0024 24.2 6.5 66 24-93 62-136 (310)
29 1qe0_A Histidyl-tRNA synthetas 42.6 20 0.00069 28.0 3.5 58 8-71 328-386 (420)
30 3net_A Histidyl-tRNA synthetas 42.0 26 0.00088 28.2 4.0 61 8-75 370-431 (465)
31 2ql9_B Caspase-7; cysteine pro 42.0 6.2 0.00021 25.0 0.3 25 11-35 21-45 (97)
32 3aon_B V-type sodium ATPase su 41.8 37 0.0013 22.2 4.2 51 30-88 14-64 (115)
33 2d00_A V-type ATP synthase sub 41.7 67 0.0023 20.6 5.5 45 29-78 14-58 (109)
34 4g85_A Histidine-tRNA ligase, 41.2 88 0.003 25.3 7.2 59 8-71 418-477 (517)
35 1qtn_B Caspase-8; apoptosis, d 41.1 5.7 0.00019 25.2 -0.0 25 11-35 23-47 (95)
36 2i4r_A V-type ATP synthase sub 39.0 52 0.0018 20.9 4.5 45 30-78 21-65 (102)
37 2dko_B Caspase-3; low barrier 38.0 7.9 0.00027 24.9 0.3 24 12-35 28-51 (103)
38 1hc7_A Prolyl-tRNA synthetase; 37.6 36 0.0012 27.6 4.3 47 8-55 286-337 (477)
39 1pyo_B Caspase-2; apoptosis, c 37.5 8 0.00028 24.9 0.3 26 10-35 24-49 (105)
40 4g84_A Histidine--tRNA ligase, 37.1 81 0.0028 24.8 6.3 58 9-71 366-424 (464)
41 1v95_A Nuclear receptor coacti 36.9 32 0.0011 23.1 3.3 58 9-71 8-67 (130)
42 2il1_A RAB12; G-protein, GDP, 36.5 94 0.0032 20.7 7.0 29 50-78 83-112 (192)
43 3lc0_A Histidyl-tRNA synthetas 34.8 77 0.0026 25.4 5.8 59 9-73 361-419 (456)
44 1qf6_A THRRS, threonyl-tRNA sy 34.4 36 0.0012 28.7 3.9 61 8-75 538-599 (642)
45 2pw6_A Uncharacterized protein 34.1 58 0.002 24.3 4.7 69 23-94 95-163 (271)
46 3dz8_A RAS-related protein RAB 34.1 97 0.0033 20.5 5.6 25 54-78 85-109 (191)
47 2y8e_A RAB-protein 6, GH09086P 33.6 95 0.0032 19.9 6.5 27 50-76 71-98 (179)
48 2zt5_A Glycyl-tRNA synthetase; 32.7 58 0.002 27.8 4.9 59 8-71 558-618 (693)
49 4e51_A Histidine--tRNA ligase; 32.4 67 0.0023 25.8 5.1 60 9-70 354-414 (467)
50 1nyr_A Threonyl-tRNA synthetas 32.4 36 0.0012 28.5 3.6 59 8-71 544-603 (645)
51 1bax_A M-PMV MA, M-PMV matrix 32.3 26 0.00088 22.4 2.1 18 23-41 9-26 (94)
52 2fz5_A Flavodoxin; alpha/beta 32.3 94 0.0032 19.4 7.2 46 23-79 14-60 (137)
53 1z0f_A RAB14, member RAS oncog 32.2 1E+02 0.0034 19.8 7.5 30 50-79 72-102 (179)
54 1vm6_A DHPR, dihydrodipicolina 31.3 1.1E+02 0.0039 22.4 5.8 74 9-92 53-126 (228)
55 2xzd_B Caspase-3; hydrolase-pr 31.2 12 0.00043 24.6 0.4 25 11-35 26-50 (118)
56 1sc3_B Interleukin-1 beta conv 31.0 13 0.00044 23.2 0.4 25 11-35 19-43 (88)
57 2j3l_A Prolyl-tRNA synthetase; 31.0 39 0.0013 27.7 3.5 58 9-71 470-530 (572)
58 2bcg_Y Protein YP2, GTP-bindin 30.8 1.2E+02 0.0041 20.2 7.0 25 54-78 70-94 (206)
59 4f3y_A DHPR, dihydrodipicolina 30.7 1.2E+02 0.004 22.6 5.9 74 9-92 73-146 (272)
60 3rjm_B Caspase-2; caspase-2, c 30.5 12 0.0004 24.7 0.2 26 10-35 25-50 (117)
61 3uh0_A Threonyl-tRNA synthetas 30.4 65 0.0022 25.9 4.7 58 9-71 345-419 (460)
62 3tkl_A RAS-related protein RAB 30.3 1.2E+02 0.004 19.9 6.9 29 50-78 73-102 (196)
63 2fzv_A Putative arsenical resi 30.1 1.3E+02 0.0045 22.5 6.1 55 24-80 76-138 (279)
64 2fg5_A RAB-22B, RAS-related pr 29.5 1.2E+02 0.0043 20.0 7.6 29 50-78 80-109 (192)
65 1p9l_A Dihydrodipicolinate red 29.4 1.7E+02 0.0057 21.4 6.6 77 9-92 45-121 (245)
66 3a32_A Probable threonyl-tRNA 29.4 37 0.0013 27.3 3.1 58 9-71 338-403 (471)
67 2p5s_A RAS and EF-hand domain 27.9 1.4E+02 0.0047 19.9 6.5 27 50-76 85-112 (199)
68 3ijp_A DHPR, dihydrodipicolina 27.6 1.7E+02 0.0057 22.1 6.3 74 9-92 88-161 (288)
69 3ial_A Prolyl-tRNA synthetase; 27.0 29 0.00099 28.7 2.0 35 23-58 322-358 (518)
70 1h4v_B Histidyl-tRNA synthetas 26.8 69 0.0024 24.9 4.2 57 8-71 327-384 (421)
71 1b93_A Protein (methylglyoxal 26.4 90 0.0031 21.4 4.2 63 10-75 12-91 (152)
72 1g5h_A Mitochondrial DNA polym 26.3 51 0.0018 26.5 3.4 60 8-71 337-401 (454)
73 2f5t_X Archaeal transcriptiona 26.1 70 0.0024 23.4 3.8 35 7-44 21-55 (233)
74 1ati_A Glycyl-tRNA synthetase; 25.0 77 0.0026 25.8 4.2 58 8-71 397-458 (505)
75 2q62_A ARSH; alpha/beta, flavo 25.0 2E+02 0.0068 20.9 7.8 55 24-80 52-113 (247)
76 2gf9_A RAS-related protein RAB 24.6 1.5E+02 0.0052 19.4 7.1 28 50-77 79-107 (189)
77 1vmd_A MGS, methylglyoxal synt 24.0 1.1E+02 0.0036 21.7 4.3 63 10-75 28-107 (178)
78 2f7s_A C25KG, RAS-related prot 24.0 1.5E+02 0.0052 19.9 5.2 35 54-91 97-131 (217)
79 2fcj_A Small toprim domain pro 23.9 45 0.0016 22.0 2.2 65 24-93 39-104 (119)
80 2a5j_A RAS-related protein RAB 23.7 1.6E+02 0.0055 19.3 6.3 21 57-77 86-106 (191)
81 2bme_A RAB4A, RAS-related prot 23.4 1.6E+02 0.0053 19.1 7.1 29 50-78 67-96 (186)
82 2hxs_A RAB-26, RAS-related pro 23.4 84 0.0029 20.3 3.6 26 54-79 69-94 (178)
83 3ojo_A CAP5O; rossmann fold, c 23.1 1.1E+02 0.0039 24.3 4.8 53 18-72 329-382 (431)
84 4hvc_A Bifunctional glutamate/ 23.0 49 0.0017 27.3 2.7 49 8-57 307-365 (519)
85 3pid_A UDP-glucose 6-dehydroge 22.9 61 0.0021 26.0 3.2 50 19-69 347-400 (432)
86 3ftb_A Histidinol-phosphate am 22.9 1.6E+02 0.0054 21.5 5.4 57 31-91 113-171 (361)
87 2ew1_A RAS-related protein RAB 22.7 1.8E+02 0.0063 19.6 7.8 29 50-78 83-112 (201)
88 4a7p_A UDP-glucose dehydrogena 22.5 93 0.0032 24.9 4.2 63 18-81 336-406 (446)
89 2g6b_A RAS-related protein RAB 21.1 1.7E+02 0.0059 18.7 7.4 29 50-78 68-97 (180)
90 3l4e_A Uncharacterized peptida 20.8 2.3E+02 0.0077 19.9 6.2 67 11-86 30-97 (206)
91 1egw_A MADS box transcription 20.2 23 0.00079 21.6 0.1 33 60-92 35-67 (77)
92 3hly_A Flavodoxin-like domain; 20.1 2E+02 0.0067 19.0 8.9 50 23-79 15-65 (161)
93 2zki_A 199AA long hypothetical 20.1 2E+02 0.007 19.2 5.2 53 23-79 18-84 (199)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=7.1e-44 Score=261.36 Aligned_cols=127 Identities=42% Similarity=0.858 Sum_probs=104.6
Q ss_pred CCCCCCCCcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCH
Q 044631 1 MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSK 80 (136)
Q Consensus 1 ~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~ 80 (136)
|+|+ ++.+|||||||+++|+|+.|+.+|+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+
T Consensus 1 msss-~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~-~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~ 78 (176)
T 3jrn_A 1 MSSH-TATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78 (176)
T ss_dssp -------CCEEEEEEECHHHHTTTHHHHHHHHHHH-TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCH
T ss_pred CCCC-CCCCCeEEEECcCcccChHHHHHHHHHHHH-CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCCh
Confidence 5544 566999999999999988999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEEEeccCccccccccCcHHHHHHHHHHH
Q 044631 81 WCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQ 129 (136)
Q Consensus 81 wc~~El~~~~~~~~~~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~~~~ 129 (136)
||++||..+++|.+.++++||||||+|+|++||+|+|.||++|.+++++
T Consensus 79 WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~ 127 (176)
T 3jrn_A 79 WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127 (176)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc
Confidence 9999999999998888999999999999999999999999999999987
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=4e-43 Score=261.99 Aligned_cols=123 Identities=52% Similarity=0.885 Sum_probs=118.0
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
+|||||||+++|+|+.|+.+|+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||++|+.|+||++||..
T Consensus 35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~-~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~ 113 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAE 113 (204)
T ss_dssp CCCEEEEECHHHHTTTHHHHHHHHHHH-TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHH
T ss_pred CCeEEEeccccCCCHHHHHHHHHHHHH-CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHH
Confidence 899999999999988999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC-CCCEEEEEEeccCccccccccCcHHHHHHHHHHHccc
Q 044631 89 ILECKNT-NGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFED 132 (136)
Q Consensus 89 ~~~~~~~-~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~~~~~~~ 132 (136)
|++|.+. ++++||||||+|+|++||+|+|.||++|.++++++.+
T Consensus 114 I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~ 158 (204)
T 3ozi_A 114 IVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG 158 (204)
T ss_dssp HHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH
T ss_pred HHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH
Confidence 9999764 6899999999999999999999999999999988743
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=6.8e-36 Score=214.33 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=109.7
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHH
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELV 87 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~ 87 (136)
.+|||||||+++| ++.|+.+|+.+|++ .|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.|+.
T Consensus 19 ~~~dvFISy~~~D-~~~~~~~L~~~L~~-~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 19 PPHDIFISHAWED-KADFVEALAHTLRA-AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CSEEEEEEEEGGG-TTTTHHHHHHHHHH-HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCceEEEECcccC-hHHHHHHHHHHHHH-CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 3899999999999 56899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCEEEEEEeccCccccccccCcHHHHHHHH
Q 044631 88 KILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDEL 126 (136)
Q Consensus 88 ~~~~~~~~~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~ 126 (136)
.++++...++.+||||||+++|++|++|+|.|+++|..+
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999987667789999999999999999999998776543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.95 E-value=5.1e-29 Score=177.61 Aligned_cols=107 Identities=20% Similarity=0.323 Sum_probs=79.3
Q ss_pred CCCcccEEEecccCcCchhHHHHHHHHHHcC-CCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHH
Q 044631 6 SSCNYEVFLNFRGEDTRKSFTCYLYDKLYEG-KKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLN 84 (136)
Q Consensus 6 ~~~~yDVFISys~~D~~~~fv~~L~~~L~~~-~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~ 84 (136)
....|||||||+++|. .||.+|..+|+++ .|+++|++.+++.||+.+.++|.++|++|+++|+|+|++|++|.||..
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 3448999999999995 6899999999983 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEEEEeccCcccccc
Q 044631 85 ELVKILECKNTNGQIIIPVFYGVSPSDVRH 114 (136)
Q Consensus 85 El~~~~~~~~~~~~~iiPVf~~v~p~~v~~ 114 (136)
|+..|+.+...+..+||||++++++++++.
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~ 114 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPP 114 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSCG
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCCH
Confidence 999999876334447889999988666543
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=1.9e-27 Score=169.73 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=91.6
Q ss_pred CcccEEEecccCcCchhHHHH-HHHHHHcCC--CCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHH
Q 044631 8 CNYEVFLNFRGEDTRKSFTCY-LYDKLYEGK--KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLN 84 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~-L~~~L~~~~--gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~ 84 (136)
..|||||||+++|. .||.+ |...|++ . |+++|+|.+++.||+.+.++|.++|++|+++|+|+||+|++|.||..
T Consensus 4 ~~yDvFiSy~~~D~--~~v~~~L~~~Le~-~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~ 80 (149)
T 1fyx_A 4 IXYDAFVSYSERDA--YWVENLMVQELEN-FNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY 80 (149)
T ss_dssp CCEEEEEECCGGGH--HHHHTHHHHHHTT-SSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred ccceEEEECCcccH--HHHHHHHHHHHhc-CCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence 47999999999995 79986 9999998 5 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-cCCCCEEEEEEec-cCccccc
Q 044631 85 ELVKILECK-NTNGQIIIPVFYG-VSPSDVR 113 (136)
Q Consensus 85 El~~~~~~~-~~~~~~iiPVf~~-v~p~~v~ 113 (136)
|+..|+.+. ..++.+||||+|+ +.+..+.
T Consensus 81 El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 81 ELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999988643 4456789999994 6655554
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1e-26 Score=167.93 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=89.5
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHHcC-CCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEEeecCCCCCHhHHH
Q 044631 7 SCNYEVFLNFRGEDTRKSFTCYLYDKLYEG-KKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSKDYASSKWCLN 84 (136)
Q Consensus 7 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~-~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~vlS~~y~~S~wc~~ 84 (136)
...|||||||+++| ..||.+|..+|++. .|+++|++.+++.||+.+.++|.++|+ +|+++|+|+|++|++|.||..
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 34899999999999 48999999999982 469999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHhh-cCCCCEEEEEEeccC
Q 044631 85 ELVKILECK-NTNGQIIIPVFYGVS 108 (136)
Q Consensus 85 El~~~~~~~-~~~~~~iiPVf~~v~ 108 (136)
|+..|+.+. ..++.+||||+|+.-
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEccc
Confidence 999999864 334568999999643
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=2.3e-26 Score=168.69 Aligned_cols=105 Identities=17% Similarity=0.317 Sum_probs=88.2
Q ss_pred CcccEEEecccCcCchhHHHH-HHHHHHc-CCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHH
Q 044631 8 CNYEVFLNFRGEDTRKSFTCY-LYDKLYE-GKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNE 85 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~-L~~~L~~-~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~E 85 (136)
..|||||||+++|. .||.+ |...|++ +.|+++|+|.+++.||+.+.++|.++|++|+++|+|+||+|++|+||..|
T Consensus 34 ~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~E 111 (178)
T 2j67_A 34 VRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYE 111 (178)
T ss_dssp CCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTH
T ss_pred ccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHH
Confidence 38999999999994 89975 9999987 47999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh-cCCCCEEEEEEec-cCcccccc
Q 044631 86 LVKILECK-NTNGQIIIPVFYG-VSPSDVRH 114 (136)
Q Consensus 86 l~~~~~~~-~~~~~~iiPVf~~-v~p~~v~~ 114 (136)
+..|+.+. .+++.+||||+|+ +.+.+++.
T Consensus 112 l~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~ 142 (178)
T 2j67_A 112 FYFAHHNLFHENSDHIILILLEPIPFYCIPT 142 (178)
T ss_dssp HHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence 99998653 4456789999995 55544443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=8.7e-26 Score=162.87 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=88.8
Q ss_pred cccEEEecccCcC---------chhHHHHHHH-HHH-cCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCC
Q 044631 9 NYEVFLNFRGEDT---------RKSFTCYLYD-KLY-EGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYA 77 (136)
Q Consensus 9 ~yDVFISys~~D~---------~~~fv~~L~~-~L~-~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~ 77 (136)
.|||||||+++|. ++.||.+|.. .|+ + .|+++|++.+++.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~-~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKH-YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHT-SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCC-CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 5999999999995 3578888665 699 6 99999999999999999999999999999999999999997
Q ss_pred -CCHhHHHHHHHHHHhh-cCCCCEEEEEEeccCc
Q 044631 78 -SSKWCLNELVKILECK-NTNGQIIIPVFYGVSP 109 (136)
Q Consensus 78 -~S~wc~~El~~~~~~~-~~~~~~iiPVf~~v~p 109 (136)
.|.||..|+..|+.+. .+++.+||||++.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999875 5668899999986433
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=160.75 Aligned_cols=98 Identities=18% Similarity=0.368 Sum_probs=89.0
Q ss_pred CcccEEEecccCcCchhHH-HHHHHHHHc----CCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhH
Q 044631 8 CNYEVFLNFRGEDTRKSFT-CYLYDKLYE----GKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWC 82 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv-~~L~~~L~~----~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc 82 (136)
.+|||||||+++|. .|| .+|...|+. +.|+++|++++|+.||+.+.++|.++|++||.+|+|+|++|+.|+||
T Consensus 669 ~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc 746 (844)
T 3j0a_A 669 YKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWC 746 (844)
T ss_dssp CCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTST
T ss_pred eeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHH
Confidence 38999999999994 677 779999995 26899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-cCCCCEEEEEEecc
Q 044631 83 LNELVKILECK-NTNGQIIIPVFYGV 107 (136)
Q Consensus 83 ~~El~~~~~~~-~~~~~~iiPVf~~v 107 (136)
..|+..|+.+. .+++++||||+|+.
T Consensus 747 ~~e~~~a~~~~~~~~~~~~i~i~~~~ 772 (844)
T 3j0a_A 747 LEAFSYAQGRCLSDLNSALIMVVVGS 772 (844)
T ss_dssp THHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 99999998765 55678999999963
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.39 E-value=6e-07 Score=60.70 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=53.7
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
+|.+||||+.+|. ...|...|.. .|+..- | ..|+.|+++|++.++....|+||..|+..
T Consensus 4 ~~~lFISh~~~d~----~~~L~~~l~~-~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 4 EIRLYITEGEVED----YRVFLERLEQ-SGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CEEEEECCCCSHH----HHHHHHHHHH-HCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred eEEEEEecccHhH----HHHHHHHHhC-CCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 6999999999982 3334444434 565332 1 78999999999999999999999999987
Q ss_pred HHHhhcCCCCEEEEEEe
Q 044631 89 ILECKNTNGQIIIPVFY 105 (136)
Q Consensus 89 ~~~~~~~~~~~iiPVf~ 105 (136)
|.+ .+.+|+-|.-
T Consensus 63 A~~----~gkpIigV~~ 75 (111)
T 1eiw_A 63 ARK----SSKPIITVRP 75 (111)
T ss_dssp HTT----TTCCEEEECC
T ss_pred HHH----cCCCEEEEEc
Confidence 754 3456777754
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.58 E-value=0.00041 Score=50.53 Aligned_cols=105 Identities=22% Similarity=0.237 Sum_probs=71.6
Q ss_pred ccEEEec--------------ccCcCchhHHHHHHHHHHcCCCCeEEeeCCcc----cC----CCcchHHHHhchhcCcE
Q 044631 10 YEVFLNF--------------RGEDTRKSFTCYLYDKLYEGKKIKTFIDDEEL----RR----GDEISPALLNAIQGSKI 67 (136)
Q Consensus 10 yDVFISy--------------s~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i----~~----G~~~~~~i~~aI~~S~~ 67 (136)
--+|++| ..+|. .+...|..--.. ..+-.|.|.++. .- -..|...+.+.|..|+.
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n-~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGE-DNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHH-CTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred cCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcC-CCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 3478888 45553 455566655555 445566776543 22 34577889999999999
Q ss_pred EEEEeecCCCCCHhHHHHHHHHHHhhcCCCCEEEEEEeccC-ccccccccCcHH
Q 044631 68 SVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVS-PSDVRHQNGTFG 120 (136)
Q Consensus 68 ~I~vlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~-p~~v~~~~~~~~ 120 (136)
+|+++|++...|.|...|+..+++ ..+.+||-|..+-+ .+++..-.|.|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 999999999999999999998873 23568888876633 334443334433
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=94.89 E-value=0.24 Score=34.91 Aligned_cols=76 Identities=9% Similarity=0.078 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHcCCCCeEEeeCCccc-CCCcchHHHHhchhcCcEEEEEeec--CCCCCHhHHHHHHHHHHhhcCCCCE
Q 044631 23 KSFTCYLYDKLYEGKKIKTFIDDEELR-RGDEISPALLNAIQGSKISVVIFSK--DYASSKWCLNELVKILECKNTNGQI 99 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~vf~d~~~i~-~G~~~~~~i~~aI~~S~~~I~vlS~--~y~~S~wc~~El~~~~~~~~~~~~~ 99 (136)
..+...+.+.|+. +|+.||.-.++-. .+..+.+.=.++|++|+++|++++| .-..+.-+..|+..+....+ +
T Consensus 26 ~~~~~~l~~~l~~-~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK----P 100 (161)
T 2f62_A 26 ASYYNKVRELLKK-ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK----M 100 (161)
T ss_dssp HHHHHHHHHHHHT-TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC----E
T ss_pred HHHHHHHHHHHHH-CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC----E
Confidence 3788999999999 9999987533211 1122233337899999999999997 44455668889999887543 5
Q ss_pred EEEE
Q 044631 100 IIPV 103 (136)
Q Consensus 100 iiPV 103 (136)
|+-+
T Consensus 101 Vi~l 104 (161)
T 2f62_A 101 VLTF 104 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=91.52 E-value=1.6 Score=30.48 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=57.2
Q ss_pred CCCCCCCCcccEEEecccCcCc--hhHHHHHHHHHHcCCCCeEEeeCCcc----cCCC-------cchHHHHhchhcCcE
Q 044631 1 MASSSSSCNYEVFLNFRGEDTR--KSFTCYLYDKLYEGKKIKTFIDDEEL----RRGD-------EISPALLNAIQGSKI 67 (136)
Q Consensus 1 ~~~~~~~~~yDVFISys~~D~~--~~fv~~L~~~L~~~~gi~vf~d~~~i----~~G~-------~~~~~i~~aI~~S~~ 67 (136)
|+..+-+.+..|||+=.-...+ ......+.+.|++ .| .|+.+..-. ..|. .+...-.+.|++|++
T Consensus 3 ~~~~~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~-~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~ 80 (165)
T 2khz_A 3 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV 80 (165)
T ss_dssp CCCCSSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHH-HS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred cccCCCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHh-cC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence 5555555577899984333111 2256899999999 99 886543210 1221 122333488999999
Q ss_pred EEEEeecCCCCCHhHHHHHHHHHHhh
Q 044631 68 SVVIFSKDYASSKWCLNELVKILECK 93 (136)
Q Consensus 68 ~I~vlS~~y~~S~wc~~El~~~~~~~ 93 (136)
+|++++ ..+.-+..|+..+....
T Consensus 81 vva~~~---~~d~Gt~~EiGyA~alg 103 (165)
T 2khz_A 81 VVAEVT---QPSLGVGYELGRAVALG 103 (165)
T ss_dssp EEEECS---SCCHHHHHHHHHHHHTC
T ss_pred EEEECC---CCCCCHHHHHHHHHHCC
Confidence 999997 56777899999987753
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=87.19 E-value=2.7 Score=29.57 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHcC-CCCeEEeeCCcc----cCCCcch----HHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHHhh
Q 044631 23 KSFTCYLYDKLYEG-KKIKTFIDDEEL----RRGDEIS----PALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECK 93 (136)
Q Consensus 23 ~~fv~~L~~~L~~~-~gi~vf~d~~~i----~~G~~~~----~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~~~ 93 (136)
..+..++.++|+.. .|+.+|.-.++- .++..|. ..=.++|.+|+++|.++. ....+..+..|+..+....
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 35778899999972 389888554332 1233343 344467999999999995 3446788999999988754
Q ss_pred cCCCCEEEEEE
Q 044631 94 NTNGQIIIPVF 104 (136)
Q Consensus 94 ~~~~~~iiPVf 104 (136)
.+|+.+.
T Consensus 98 ----kPVi~~~ 104 (162)
T 3ehd_A 98 ----IPVVALY 104 (162)
T ss_dssp ----CCEEEEC
T ss_pred ----CEEEEEE
Confidence 3555553
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=86.43 E-value=2.6 Score=29.34 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHcCCCCeEEeeC---Ccc-cCCC-------cchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHH
Q 044631 23 KSFTCYLYDKLYEGKKIKTFIDD---EEL-RRGD-------EISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILE 91 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~vf~d~---~~i-~~G~-------~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~ 91 (136)
..+...+.+.|++ .| .|+-.. .++ ..|+ .+.+.-.++|++|+++|.+++ ..|.-...|+..|..
T Consensus 18 ~~~~~~i~~~L~~-~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~a 92 (152)
T 4fyk_A 18 QALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVA 92 (152)
T ss_dssp HHHHHHHHHHHTT-TS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHH
Confidence 3677999999999 99 675321 111 1121 244555688999999999988 667888999999887
Q ss_pred hh
Q 044631 92 CK 93 (136)
Q Consensus 92 ~~ 93 (136)
..
T Consensus 93 lg 94 (152)
T 4fyk_A 93 LG 94 (152)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 16
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=76.49 E-value=3.9 Score=27.77 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=41.2
Q ss_pred EEEecccCcCchhHHHHHHHHHHcCCCCeEE--------e-----eCCccc---CC-C-cchHHHHhchhcCcEEEEEee
Q 044631 12 VFLNFRGEDTRKSFTCYLYDKLYEGKKIKTF--------I-----DDEELR---RG-D-EISPALLNAIQGSKISVVIFS 73 (136)
Q Consensus 12 VFISys~~D~~~~fv~~L~~~L~~~~gi~vf--------~-----d~~~i~---~G-~-~~~~~i~~aI~~S~~~I~vlS 73 (136)
||||.+..|. .-+..+.+.|.. .|++++ + .-..+. .| + .-.++|.+.|.+-.+-+||..
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~-lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt 103 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHN-EGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINL 103 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHT-TTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEEC
T ss_pred EEEEecccch--HHHHHHHHHHHH-CCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEEC
Confidence 9999988773 445567888888 888877 1 111111 12 1 001468888998889888888
Q ss_pred cCCC
Q 044631 74 KDYA 77 (136)
Q Consensus 74 ~~y~ 77 (136)
|+-.
T Consensus 104 ~~~~ 107 (143)
T 2yvq_A 104 PNNN 107 (143)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=74.69 E-value=13 Score=25.99 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHcCC--CCeEEeeCCc-c--------cCC--------CcchHHHHhchhcCcEEEEEeecCCCCCHhHH
Q 044631 23 KSFTCYLYDKLYEGK--KIKTFIDDEE-L--------RRG--------DEISPALLNAIQGSKISVVIFSKDYASSKWCL 83 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~--gi~vf~d~~~-i--------~~G--------~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~ 83 (136)
..+...+.+.|+. + |+.+|.-.++ . ..| ..|.+.=.++|++|+++|.++.+.- .+.-+.
T Consensus 22 ~~~~~~~~~~L~~-~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~-~D~GTa 99 (167)
T 1s2d_A 22 RERAAKAKELLAK-NPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQ-LDDGSA 99 (167)
T ss_dssp HHHHHHHHHHHTT-CTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSS-CCHHHH
T ss_pred HHHHHHHHHHHHh-CCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCC-CCCCce
Confidence 3677899999999 8 8888855431 1 111 1223344578999999999998744 456788
Q ss_pred HHHHHHHHhhcCCCCEEEEE
Q 044631 84 NELVKILECKNTNGQIIIPV 103 (136)
Q Consensus 84 ~El~~~~~~~~~~~~~iiPV 103 (136)
.|+..+....+ +|+-+
T Consensus 100 ~EiGyA~algK----PVv~l 115 (167)
T 1s2d_A 100 FXIGFMRAMHK----PVILV 115 (167)
T ss_dssp HHHHHHHHTTC----CEEEE
T ss_pred eehhhHhhCCC----eEEEE
Confidence 89999877543 55544
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=64.09 E-value=6.6 Score=23.76 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCCeEEeeCCccc---CCCcchHHHHhchhcCc
Q 044631 26 TCYLYDKLYEGKKIKTFIDDEELR---RGDEISPALLNAIQGSK 66 (136)
Q Consensus 26 v~~L~~~L~~~~gi~vf~d~~~i~---~G~~~~~~i~~aI~~S~ 66 (136)
+..|...|++ .||..|.+.+.+. |-..+.+++...+...+
T Consensus 7 ~~~ll~~l~~-~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAAS-LGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHH-HTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHH-cCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 3467788888 9999999987764 44456677777776544
No 19
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=54.84 E-value=24 Score=24.31 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHcCCCC----eEEeeCCccc------------CCC----cchHHHHhchhcCcEEEEEeecCCCCCHhH
Q 044631 23 KSFTCYLYDKLYEGKKI----KTFIDDEELR------------RGD----EISPALLNAIQGSKISVVIFSKDYASSKWC 82 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi----~vf~d~~~i~------------~G~----~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc 82 (136)
.....++.+.|+. +|. .+|.-.++-. ++. .+.+.=.++|++|+++|.++...- .+.-+
T Consensus 18 ~~~~~~~~~~L~~-~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT 95 (157)
T 1f8y_A 18 NKAYKEAMEALKE-NPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGL 95 (157)
T ss_dssp HHHHHHHHHHHHH-CTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHH
T ss_pred HHHHHHHHHHHHH-CCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccH
Confidence 3677899999999 885 5654432111 111 223344578999999999998433 45678
Q ss_pred HHHHHHHHHhhcCCCCEEEEEE
Q 044631 83 LNELVKILECKNTNGQIIIPVF 104 (136)
Q Consensus 83 ~~El~~~~~~~~~~~~~iiPVf 104 (136)
..|+..+....+ +|+-+.
T Consensus 96 ~~EiGyA~A~gk----PVv~~~ 113 (157)
T 1f8y_A 96 GMELGYALSQGK----YVLLVI 113 (157)
T ss_dssp HHHHHHHHHTTC----EEEEEE
T ss_pred HHHHHHHHHCCC----eEEEEE
Confidence 889999877543 565543
No 20
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=52.82 E-value=19 Score=28.22 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=39.1
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v 71 (136)
+.++|+|---+++ ....+..|++.|+. .|++|-+|.++ ..+...+..|-. +...+|+|
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~-~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSN-AGIRVKADLRN----EKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHH-TTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHH-CCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 4689988765544 35788999999999 99999998753 344445544433 44544443
No 21
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=51.59 E-value=17 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch
Q 044631 24 SFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62 (136)
Q Consensus 24 ~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI 62 (136)
.+...+.+.+.+ ..=.+++-...+ +...+.+.+.++.
T Consensus 14 ~~~~~~~~~i~~-A~~~I~i~~~~~-~~~~i~~aL~~a~ 50 (155)
T 1byr_A 14 SARVLVLSAIDS-AKTSIRMMAYSF-TAPDIMKALVAAK 50 (155)
T ss_dssp HHHHHHHHHHHH-CSSEEEEEESSB-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhhEEEEEEEEe-CCHHHHHHHHHHH
Confidence 344555666665 443444332222 2334444444444
No 22
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=51.54 E-value=21 Score=28.23 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=37.6
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
.+||+|..-+++. ...+..|++.|+. .|++|-+|..+ ..+...+..|- .++...|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~-~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRE-RGMNVTVEIME----RGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHT-TTCEEEECCSC----CCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHH-CCCeEEEecCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 5789866555443 4678899999999 99999998653 33444444332 355555444
No 23
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=48.53 E-value=28 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=30.2
Q ss_pred cccEEEeccc--CcCchhHHHHHHHHHHcCCCCeEE--eeCC-cccCCCcch
Q 044631 9 NYEVFLNFRG--EDTRKSFTCYLYDKLYEGKKIKTF--IDDE-ELRRGDEIS 55 (136)
Q Consensus 9 ~yDVFISys~--~D~~~~fv~~L~~~L~~~~gi~vf--~d~~-~i~~G~~~~ 55 (136)
-++|=|--.. .|....++..|++.|++ .||+|. +|.+ +-.+|..+.
T Consensus 348 P~qV~Iii~~~~~e~~~~~A~~L~~~Lr~-~GIrV~~d~Ddr~~~siGkK~r 398 (459)
T 3ikl_A 348 PIKVALDVGRGPTLELRQVCQGLFNELLE-NGISVWPGYLETMQSSLEQLYS 398 (459)
T ss_dssp SCCEEEEESSCCSTTHHHHHHHHHHHHHH-TSCCEECGGGSSSCCTTHHHHH
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHH-CCCeEEEeecCCcCCCHHHHHH
Confidence 5666444322 24346789999999999 999999 7764 344454443
No 24
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=47.72 E-value=18 Score=28.97 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=32.4
Q ss_pred CcccEEEeccc-C-cCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcch
Q 044631 8 CNYEVFLNFRG-E-DTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEIS 55 (136)
Q Consensus 8 ~~yDVFISys~-~-D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~ 55 (136)
+.++|+|---. + +.....+..|++.|+. .|++|-+|.++-.+|..+.
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~-~Gi~v~~D~~~~~~g~k~~ 412 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSA-KGVDVLYDDTDQRAGAKFA 412 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHH-TTCCEEEECSSCCHHHHHH
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhh-CCCEEEEECCCCCHHHHHH
Confidence 35789876432 2 2235678999999999 9999999976434444333
No 25
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=45.05 E-value=22 Score=29.07 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=33.4
Q ss_pred CcccEEEecc-c-Cc--CchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcch
Q 044631 8 CNYEVFLNFR-G-ED--TRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEIS 55 (136)
Q Consensus 8 ~~yDVFISys-~-~D--~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~ 55 (136)
+.|+|+|--- . ++ .....+..|++.|+. .|++|-+|.++-.+|..+.
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~-~Gi~v~~D~~~~s~g~k~~ 363 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEA-AGFRVHLDDRDIRAGRKYY 363 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHT-TTCCEEECCCSSCHHHHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHh-CCCEEEEECCCCCHHHHHH
Confidence 4688887654 3 31 235788999999999 9999999976544554443
No 26
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=44.17 E-value=80 Score=23.93 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=43.2
Q ss_pred CCCeEEeeCCcccCCCcchHHHHhchh------cCcEEEEEeecCCCCCHhHHHHHHHHHHhhcCCCCEEEEEEec
Q 044631 37 KKIKTFIDDEELRRGDEISPALLNAIQ------GSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYG 106 (136)
Q Consensus 37 ~gi~vf~d~~~i~~G~~~~~~i~~aI~------~S~~~I~vlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~ 106 (136)
.|...|++-++. +-..+..+|..... ..+..|+|-|=||+.+ ..|...+...-.-.-.++-|++.
T Consensus 67 ~~ad~FI~a~~k-sl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~ 137 (270)
T 4a8j_B 67 SYCTQFIDATQM-DFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHK 137 (270)
T ss_dssp TTCSEEEETTSS-CHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEET
T ss_pred CCCCeeeEcCCC-CHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecC
Confidence 567777776542 23344445544443 2367999999999997 57777777665446678888874
No 27
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=43.59 E-value=21 Score=27.93 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=38.7
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCC--CCeEEeeCCcccCCCcchHHHHhc-hhcCcEEEEE
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGK--KIKTFIDDEELRRGDEISPALLNA-IQGSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~--gi~vf~d~~~i~~G~~~~~~i~~a-I~~S~~~I~v 71 (136)
+.+||+|..-+++. ...+..|++.|+. . |++|-+|..+ ..+...+..| .......|+|
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~-~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRD-ELPGVKLMTNHGG----GNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHH-HSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHc-CCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 45799888755443 4678899999999 9 9999998653 3344444433 2355555544
No 28
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=43.04 E-value=70 Score=24.20 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCC----CeEEeeCCcccCCCcchHHHHhchhc---CcEEEEEeecCCCCC--HhHHHHHHHHHHhh
Q 044631 24 SFTCYLYDKLYEGKK----IKTFIDDEELRRGDEISPALLNAIQG---SKISVVIFSKDYASS--KWCLNELVKILECK 93 (136)
Q Consensus 24 ~fv~~L~~~L~~~~g----i~vf~d~~~i~~G~~~~~~i~~aI~~---S~~~I~vlS~~y~~S--~wc~~El~~~~~~~ 93 (136)
..+..|.+.|.. .| +.|.+- +..|.+...+..+.+.+ .+++++.+.|.|..+ .-..+++..++...
T Consensus 62 ~q~~~L~~~L~~-~~~~~~~~V~~a---mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~~ 136 (310)
T 2h1v_A 62 QQAHNLEQHLNE-IQDEITFKAYIG---LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKL 136 (310)
T ss_dssp HHHHHHHHHHHH-HCSSEEEEEEEE---ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCCceEeeh---hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHhC
Confidence 346677777766 54 556554 55676665555555542 556888899988654 34566776666543
No 29
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=42.64 E-value=20 Score=28.00 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=37.2
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
+.++|+|..-+++. ...+..|++.|+. .|++|-+|..+ ..+...+..|- .+....|+|
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~-~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iii 386 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRH-NGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVI 386 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHT-TTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHH-CCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 35789877544332 4678899999999 99999998653 34444444333 244544443
No 30
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=42.00 E-value=26 Score=28.20 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=39.9
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEEeecC
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSKD 75 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~vlS~~ 75 (136)
+.+||+|..-+++. ...+..|.+.|++ .|++|-+|..+ ..+...+..|-. ... .++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~-~Gi~ve~d~~~----~sl~~q~k~A~~~g~p-~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQ-AGLNVITNFEK----RQLGKQFQAADKQGIR-FCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHH-TTCCEEECCSC----CCHHHHHHHHHHHTCC-EEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHH-CCCEEEEEeCC----CCHHHHHHHHHHcCCC-EEEEECch
Confidence 46899987655543 4678899999999 99999988653 344445544433 344 44444443
No 31
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=41.96 E-value=6.2 Score=24.96 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=16.9
Q ss_pred cEEEecccCcCchhHHHHHHHHHHc
Q 044631 11 EVFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 11 DVFISys~~D~~~~fv~~L~~~L~~ 35 (136)
..|.||++.+.+-.|+..|.+.|++
T Consensus 21 pG~~S~R~~~~GSwfIq~Lc~~l~~ 45 (97)
T 2ql9_B 21 PGYYSWRSPGRGSWFVQALCSILEE 45 (97)
T ss_dssp TTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCcEeeecCCCCCeeHHHHHHHHHH
Confidence 3444555554445788999999987
No 32
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=41.83 E-value=37 Score=22.16 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=35.0
Q ss_pred HHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 30 YDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 30 ~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
...++. .|+.+|... .-+.+.+.+.+.+++ ++.|++++.+.... +.+++..
T Consensus 14 v~GFrL-aGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 14 VSPFRL-FGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp HGGGGG-GTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHH-cCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 445666 899887542 234566677777777 99999999998873 4445544
No 33
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=41.72 E-value=67 Score=20.57 Aligned_cols=45 Identities=7% Similarity=0.078 Sum_probs=33.4
Q ss_pred HHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCC
Q 044631 29 LYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 29 L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
....++. .|+.+|... ..+.+.+.+.+.+++-++.|++++.+...
T Consensus 14 tv~GFrL-aGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 14 TAQGFRL-AGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHH-TTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHH-cCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3455667 899988542 23556667777777789999999999988
No 34
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=41.18 E-value=88 Score=25.25 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=38.5
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v 71 (136)
...||++..-+++. ...+..|.+.|++ .||++-+|.. .+..+...+..|=. +.+.+|+|
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~-~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWD-AGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHH-TTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHH-CCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEE
Confidence 36899987765543 4567899999999 9999977642 23345555544433 45555544
No 35
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=41.06 E-value=5.7 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=16.0
Q ss_pred cEEEecccCcCchhHHHHHHHHHHc
Q 044631 11 EVFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 11 DVFISys~~D~~~~fv~~L~~~L~~ 35 (136)
+.|.||++.+.+-.|+..|.+.|++
T Consensus 23 pG~~S~R~~~~GSwfIq~Lc~~l~~ 47 (95)
T 1qtn_B 23 NNCVSYRNPAEGTWYIQSLCQSLRE 47 (95)
T ss_dssp TTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCcHHHHHHHHHHHH
Confidence 3344444444445788888888887
No 36
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=38.98 E-value=52 Score=20.95 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=32.5
Q ss_pred HHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCC
Q 044631 30 YDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 30 ~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
...++. .|+..+... ..-+.+.+.+.+.+++-++.|++++.+...
T Consensus 21 v~GFrL-aGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 21 TIGFML-AGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHH-TTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHH-cCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 455666 888877622 123456667777778889999999999887
No 37
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=37.97 E-value=7.9 Score=24.85 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=15.7
Q ss_pred EEEecccCcCchhHHHHHHHHHHc
Q 044631 12 VFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 12 VFISys~~D~~~~fv~~L~~~L~~ 35 (136)
.|.||++...+-.|+..|.+.|++
T Consensus 28 G~vS~R~~~~GSwfIq~Lc~~l~~ 51 (103)
T 2dko_B 28 GYYSWRNSKDGSWFIQSLCAMLKQ 51 (103)
T ss_dssp TBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CcEeEEcCCCCCeeHHHHHHHHHH
Confidence 344444444345788999999887
No 38
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=37.58 E-value=36 Score=27.56 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=33.3
Q ss_pred CcccEEEecccC-c---CchhHHHHHHHHHHcCCCCeEEeeCC-cccCCCcch
Q 044631 8 CNYEVFLNFRGE-D---TRKSFTCYLYDKLYEGKKIKTFIDDE-ELRRGDEIS 55 (136)
Q Consensus 8 ~~yDVFISys~~-D---~~~~fv~~L~~~L~~~~gi~vf~d~~-~i~~G~~~~ 55 (136)
+.++|+|---++ | .....+..|.+.|+. .|++|-+|.+ +-.+|..+.
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~-~Gi~v~~D~~~~~s~g~k~~ 337 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLA-QGLRVHLDDRDQHTPGYKFH 337 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHH-TTCCEEECCCSSSCHHHHHH
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHh-CCEEEEEeCCCCCCHHHHHH
Confidence 357888765443 2 224678999999999 9999999976 544554443
No 39
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=37.54 E-value=8 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=17.7
Q ss_pred ccEEEecccCcCchhHHHHHHHHHHc
Q 044631 10 YEVFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 10 yDVFISys~~D~~~~fv~~L~~~L~~ 35 (136)
...|.|||+...+-.|+..|.+.|++
T Consensus 24 ~pG~~S~R~~~~GSwFIq~Lc~~l~~ 49 (105)
T 1pyo_B 24 LKGTAAMRNTKRGSWYIEALAQVFSE 49 (105)
T ss_dssp CTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 34455555555456789999999987
No 40
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=37.12 E-value=81 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=38.0
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI 71 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v 71 (136)
..||++...+++. ...+..|.+.|++ .||++-+|.. .+..+...+..|=. +.+.+|+|
T Consensus 366 ~~~v~v~~~~~~~-~~~a~~l~~~Lr~-~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 366 ETQVLVASAQKKL-LEERLKLVSELWD-AGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp CCCEEEECSSSSC-HHHHHHHHHHHHH-TTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred cceEEEEeCCHHH-HHHHHHHHHHHHH-CCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEE
Confidence 6789998866654 4567899999999 9999977632 23345445544433 45555443
No 41
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=36.93 E-value=32 Score=23.15 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=37.8
Q ss_pred cccE-EEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 9 NYEV-FLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 9 ~yDV-FISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
..+| .|.-+.+ ...++..+...|.. .|+++=+|.. .+++.+...|.++- .+..+.|+|
T Consensus 8 P~Qv~IlpVs~~--~~~YA~~V~~~L~~-~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 8 PVDCSVIVVNKQ--TKDYAESVGRKVRD-LGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCTEEEEESSSG--GGHHHHHHHHHHHT-TTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEEeCcc--hHHHHHHHHHHHHH-CCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 4455 3344433 35899999999999 9999988753 12566666666544 345555554
No 42
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=36.51 E-value=94 Score=20.70 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCC-cchHHHHhchhcCcEEEEEeecCCCC
Q 044631 50 RGD-EISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 50 ~G~-~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
+|. .+.......+..++.+|+|++.+-..
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~ 112 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKE 112 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHH
Confidence 453 34445567788999999999876443
No 43
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=34.83 E-value=77 Score=25.44 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=39.1
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEee
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 73 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS 73 (136)
..||++...+++. ..-+-.+.+.|++ .|++|-++.. +..+..++..|-+.--..++++.
T Consensus 361 ~~~v~v~~~~~~~-~~~a~~la~~LR~-~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 361 VVDDVVIPFDESM-RPHALAVLRRLRD-AGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CEEEEEEESSGGG-HHHHHHHHHHHHH-TTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCcEEEEEcCHHH-HHHHHHHHHHHHH-CCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 5788877666554 3567889999999 9999988743 23466666665554333444444
No 44
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=34.42 E-value=36 Score=28.65 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=39.2
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEEeecC
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVIFSKD 75 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~vlS~~ 75 (136)
+.++|+|---+.+ ....+..|++.|+. .|++|-+|.++ ..+...+.+|= .+... ++|+.++
T Consensus 538 aP~qv~vipi~~~-~~~~a~~v~~~L~~-~Gi~v~~D~~~----~~~g~kir~a~~~g~p~-~ivvG~~ 599 (642)
T 1qf6_A 538 APVQVVIMNITDS-QSEYVNELTQKLSN-AGIRVKADLRN----EKIGFKIREHTLRRVPY-MLVCGDK 599 (642)
T ss_dssp CSSCEEEEESSHH-HHHHHHHHHHHHHT-TTCCEEEECCS----SCHHHHHHHHHHTTCSE-EEEECTT
T ss_pred CCceEEEEEeCHH-HHHHHHHHHHHHHh-CCCEEEEECCC----CCHHHHHHHHHHcCCCE-EEEECch
Confidence 4678877544433 35788999999999 99999999764 33444444433 34444 4444444
No 45
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=34.15 E-value=58 Score=24.31 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHHhhc
Q 044631 23 KSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKN 94 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~~~~ 94 (136)
-.++.++.+.|.. .|+.+-...+.+..|.-.. +.-.-.+.++=||-+|-+...++--..+|.+++...+
T Consensus 95 peLA~~i~~~l~~-~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lr 163 (271)
T 2pw6_A 95 PALAQRLVELLAP-IPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALR 163 (271)
T ss_dssp HHHHHHHHHHHTT-SCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHh-cCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999 9997654444455553222 2222244566678888887777777779999987654
No 46
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=34.07 E-value=97 Score=20.50 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=17.8
Q ss_pred chHHHHhchhcCcEEEEEeecCCCC
Q 044631 54 ISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 54 ~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
+.......+..++.+|+|++.+-..
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~ 109 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEE 109 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHH
T ss_pred HHHHHHHHHccCCEEEEEEECcCHH
Confidence 3344556788999999999976433
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=33.61 E-value=95 Score=19.89 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=19.1
Q ss_pred CCC-cchHHHHhchhcCcEEEEEeecCC
Q 044631 50 RGD-EISPALLNAIQGSKISVVIFSKDY 76 (136)
Q Consensus 50 ~G~-~~~~~i~~aI~~S~~~I~vlS~~y 76 (136)
||. .+.......+..++.+|+|++.+-
T Consensus 71 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 71 AGQERFRSLIPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp CCSGGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 453 344455567889999999998764
No 48
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=32.67 E-value=58 Score=27.83 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred CcccEEEecccCc-CchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631 8 CNYEVFLNFRGED-TRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D-~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v 71 (136)
+.++|+|---+++ .....+..|.+.|+. .||+|.+|.++ ..+...+..+=. .....|+|
T Consensus 558 AP~qV~Vipl~~~~~~~~~A~~l~~~Lr~-~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiI 618 (693)
T 2zt5_A 558 APFKCSVLPLSQNQEFMPFVKELSEALTR-HGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTI 618 (693)
T ss_dssp SSCSEEEEESCCSTTTHHHHHHHHHHHHH-TTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHHHHH-CCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 3578987665543 235788999999999 99999999753 344444444333 44444443
No 49
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=32.40 E-value=67 Score=25.80 Aligned_cols=60 Identities=12% Similarity=0.287 Sum_probs=39.6
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEE
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVV 70 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~ 70 (136)
..||+|-.-+++. ...+..+.+.|+. .|++|-+|...=..+..+...+..|-+ +...+|+
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~-~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~ii 414 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRD-TGLDVILHCSADGAGASFKSQMKRADASGAAFAVI 414 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHH-TTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEE
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHH-cCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEE
Confidence 4789876545443 4678899999999 999999885410024566666666654 3444444
No 50
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=32.39 E-value=36 Score=28.50 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=38.0
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
+.++|+|---+++.....+..|++.|+. .|++|-+|.++ ..+...+.+|- .+....|+|
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~-~Gi~v~~D~~~----~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKS-QGVRVSIDDRN----EKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHT-TTCCEEECCSS----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHh-CCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 4578877544412235788999999999 99999999764 34444444433 345544443
No 51
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=32.29 E-value=26 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHcCCCCeE
Q 044631 23 KSFTCYLYDKLYEGKKIKT 41 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~v 41 (136)
+.|+..|...|.. +||+|
T Consensus 9 q~fi~~lk~lLk~-RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKT-RGVKV 26 (94)
T ss_pred hHHHHHHHHHHHH-cCeee
Confidence 5799999999999 99999
No 52
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=32.27 E-value=94 Score=19.43 Aligned_cols=46 Identities=4% Similarity=0.060 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHcCCCCeEE-eeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCC
Q 044631 23 KSFTCYLYDKLYEGKKIKTF-IDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASS 79 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~vf-~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S 79 (136)
+.++..|.+.|.. .|+.+- ++-.+.. ...+.+++ .|++.+|.|..+
T Consensus 14 ~~~a~~i~~~l~~-~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~ 60 (137)
T 2fz5_A 14 EAMANEIEAAVKA-AGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSE 60 (137)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTT
T ss_pred HHHHHHHHHHHHh-CCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCC
Confidence 5788999999998 887753 3322211 12345555 556667887654
No 53
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=32.19 E-value=1e+02 Score=19.76 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=21.1
Q ss_pred CC-CcchHHHHhchhcCcEEEEEeecCCCCC
Q 044631 50 RG-DEISPALLNAIQGSKISVVIFSKDYASS 79 (136)
Q Consensus 50 ~G-~~~~~~i~~aI~~S~~~I~vlS~~y~~S 79 (136)
|| +.+.......++.++.+|+|++.+-..|
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 102 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRRST 102 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCHHH
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCHHH
Confidence 44 3445556677899999999999765433
No 54
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=31.34 E-value=1.1e+02 Score=22.39 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=47.3
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
..||.|-|+..+ .....+..+++. |+.+-+-...+.. .-...+.++ . +..=++++|||.-.-.-+.++..
T Consensus 53 ~~DVvIDFT~P~---a~~~~~~~~~~~--g~~~ViGTTG~~~--~~~~~l~~~-a--~~~~vv~apNfSlGvnll~~l~~ 122 (228)
T 1vm6_A 53 SPDVVIDFSSPE---ALPKTVDLCKKY--RAGLVLGTTALKE--EHLQMLREL-S--KEVPVVQAYNFSIGINVLKRFLS 122 (228)
T ss_dssp CCSEEEECSCGG---GHHHHHHHHHHH--TCEEEECCCSCCH--HHHHHHHHH-T--TTSEEEECSCCCHHHHHHHHHHH
T ss_pred CCCEEEECCCHH---HHHHHHHHHHHc--CCCEEEeCCCCCH--HHHHHHHHH-H--hhCCEEEeccccHHHHHHHHHHH
Confidence 579999999886 455666666665 8888765432211 111223332 2 22567899999998887777766
Q ss_pred HHHh
Q 044631 89 ILEC 92 (136)
Q Consensus 89 ~~~~ 92 (136)
.+..
T Consensus 123 ~aA~ 126 (228)
T 1vm6_A 123 ELVK 126 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 55
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=31.19 E-value=12 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=17.0
Q ss_pred cEEEecccCcCchhHHHHHHHHHHc
Q 044631 11 EVFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 11 DVFISys~~D~~~~fv~~L~~~L~~ 35 (136)
..|.|||+...+-.|+..|.+.|++
T Consensus 26 pG~vS~R~~~~GSwFIQ~Lc~vl~~ 50 (118)
T 2xzd_B 26 PGYYSWRNSKDGSWFIQSLCAMLKQ 50 (118)
T ss_dssp TTBCCCEETTTEEHHHHHHHHHHHH
T ss_pred CCCEeeEeCCCCCccHHHHHHHHHH
Confidence 3444555544445789999999987
No 56
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=31.04 E-value=13 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=18.0
Q ss_pred cEEEecccCcCchhHHHHHHHHHHc
Q 044631 11 EVFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 11 DVFISys~~D~~~~fv~~L~~~L~~ 35 (136)
.-|.|||+...+-.|+..|.+.|++
T Consensus 19 pG~~S~R~~~~GSwfIq~Lc~~l~~ 43 (88)
T 1sc3_B 19 PDNVSWRHPTMGSVFIGRLIEHMQE 43 (88)
T ss_dssp TTBCCCEETTTEEHHHHHHHHHHHH
T ss_pred CCCEeeEcCCCCCHHHHHHHHHHHH
Confidence 3455666555456799999999987
No 57
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=30.99 E-value=39 Score=27.72 Aligned_cols=58 Identities=10% Similarity=0.228 Sum_probs=37.5
Q ss_pred cccEEEeccc-C-cCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 9 NYEVFLNFRG-E-DTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 9 ~yDVFISys~-~-D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
.++|+|---+ + +.....+..|++.|++ .|++|-+|.++ ..+...+..|- ......|+|
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~-~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iiv 530 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTE-AGYEVLVDDRN----ERAGVKFADADLIGCPIRITV 530 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHH-TTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEE
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHh-CCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEE
Confidence 5789876544 2 2224678899999999 99999999754 23444444433 345555544
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=30.76 E-value=1.2e+02 Score=20.24 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=17.8
Q ss_pred chHHHHhchhcCcEEEEEeecCCCC
Q 044631 54 ISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 54 ~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
+.......+..++.+|+|++.+-..
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~ 94 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQE 94 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHH
T ss_pred HHHHHHHhccCCCEEEEEEECcCHH
Confidence 3334456778999999999976543
No 59
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.72 E-value=1.2e+02 Score=22.63 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=47.0
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
..||-|-|+..+ ....++..+|+. |+++.+-...+. +...+.|.++-++ .=++++|||.-.-.-+.+|..
T Consensus 73 ~~DVVIDfT~p~---a~~~~~~~al~~--G~~vVigTTG~s--~~~~~~L~~aa~~---~~vv~a~N~s~Gv~l~~~~~~ 142 (272)
T 4f3y_A 73 EADYLIDFTLPE---GTLVHLDAALRH--DVKLVIGTTGFS--EPQKAQLRAAGEK---IALVFSANMSVGVNVTMKLLE 142 (272)
T ss_dssp HCSEEEECSCHH---HHHHHHHHHHHH--TCEEEECCCCCC--HHHHHHHHHHTTT---SEEEECSCCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCHH---HHHHHHHHHHHc--CCCEEEECCCCC--HHHHHHHHHHhcc---CCEEEECCCCHHHHHHHHHHH
Confidence 579999998654 345566666665 999887543221 1112234343333 335999999998888888876
Q ss_pred HHHh
Q 044631 89 ILEC 92 (136)
Q Consensus 89 ~~~~ 92 (136)
.+..
T Consensus 143 ~aa~ 146 (272)
T 4f3y_A 143 FAAK 146 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 60
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=30.52 E-value=12 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=17.3
Q ss_pred ccEEEecccCcCchhHHHHHHHHHHc
Q 044631 10 YEVFLNFRGEDTRKSFTCYLYDKLYE 35 (136)
Q Consensus 10 yDVFISys~~D~~~~fv~~L~~~L~~ 35 (136)
.+.|.|||....+-.|+..|.+.|++
T Consensus 25 ~pGyvS~R~~~~GSwFIQ~Lc~vl~~ 50 (117)
T 3rjm_B 25 LKGTAAMRNTKRGSWYIEALAQVFSE 50 (117)
T ss_dssp CTTCCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCeECeeecCCCChHHHHHHHHHHH
Confidence 34444555544445789999999988
No 61
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=30.35 E-value=65 Score=25.91 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=36.6
Q ss_pred cccEEEecccCc--CchhHHHHHHHHHHcCC--------------CCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631 9 NYEVFLNFRGED--TRKSFTCYLYDKLYEGK--------------KIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI 71 (136)
Q Consensus 9 ~yDVFISys~~D--~~~~fv~~L~~~L~~~~--------------gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v 71 (136)
.++|+|---+++ ....++..|.+.|+. . ||+|-+|.++-..|. .+.+|-. +....|+|
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~-~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~----k~r~Ad~~g~p~~ivv 419 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRN-ELEADDMEPVPLNDWHFNVDLDIRNEPVGY----RIKSAILKNYSYLIIV 419 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHC-CCCTTSSCCCCTTCCCCCEEECCCSSCHHH----HHHHHHHHTCSEEEEE
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHc-CcccccccccccCCCCEEEEEECCCCCHHH----HHHHHHHcCCCEEEEE
Confidence 578876543332 124788999999999 8 999999986544444 4444433 44444443
No 62
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=30.28 E-value=1.2e+02 Score=19.93 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=20.2
Q ss_pred CC-CcchHHHHhchhcCcEEEEEeecCCCC
Q 044631 50 RG-DEISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 50 ~G-~~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
|| +.+.......+..++.+|+|++.+-..
T Consensus 73 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 102 (196)
T 3tkl_A 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQE 102 (196)
T ss_dssp CCSGGGCTTHHHHHTTCSEEEEEEETTCHH
T ss_pred CCcHhhhhhHHHHHhhCCEEEEEEECcCHH
Confidence 44 344445567788999999999876543
No 63
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=30.12 E-value=1.3e+02 Score=22.50 Aligned_cols=55 Identities=15% Similarity=-0.111 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCCCeEE-eeCCccc--CCC-----cchHHHHhchhcCcEEEEEeecCCCCCH
Q 044631 24 SFTCYLYDKLYEGKKIKTF-IDDEELR--RGD-----EISPALLNAIQGSKISVVIFSKDYASSK 80 (136)
Q Consensus 24 ~fv~~L~~~L~~~~gi~vf-~d~~~i~--~G~-----~~~~~i~~aI~~S~~~I~vlS~~y~~S~ 80 (136)
..+..+.+.|+. .|..+- +|-.++. ..+ +-..++.+.|..++ .||+.||.|..+.
T Consensus 76 ~La~~~~~~l~~-~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD-giV~aSP~Yn~si 138 (279)
T 2fzv_A 76 LAVEEAARLLQF-FGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE-GQVWCSPERHGQI 138 (279)
T ss_dssp HHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS-EEEEEEEEETTEE
T ss_pred HHHHHHHHHHhh-CCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC-eEEEEcCccccCc
Confidence 466777777887 888653 4544432 111 11346778888898 5677899998763
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=29.48 E-value=1.2e+02 Score=20.00 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=19.7
Q ss_pred CCC-cchHHHHhchhcCcEEEEEeecCCCC
Q 044631 50 RGD-EISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 50 ~G~-~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
||. .+.......+..++.+|+|++.+-..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD 109 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH
Confidence 453 34444556778999999999865443
No 65
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=29.38 E-value=1.7e+02 Score=21.38 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=47.5
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
..||-|-|+..+ ....++..+++. |+.+.+-.-.+. +.-.+.|.++.+++...=++++|||.-..--+.+|..
T Consensus 45 ~~DvvIDfT~p~---a~~~~~~~a~~~--g~~~VigTTG~~--~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 45 NTEVVIDFTHPD---VVMGNLEFLIDN--GIHAVVGTTGFT--AERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp TCCEEEECSCTT---THHHHHHHHHHT--TCEEEECCCCCC--HHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHH
T ss_pred CCcEEEEccChH---HHHHHHHHHHHc--CCCEEEcCCCCC--HHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHH
Confidence 579999998776 445555555555 888876543211 1112344455554523445789999887777777776
Q ss_pred HHHh
Q 044631 89 ILEC 92 (136)
Q Consensus 89 ~~~~ 92 (136)
....
T Consensus 118 ~aa~ 121 (245)
T 1p9l_A 118 QAAR 121 (245)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 5543
No 66
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=29.36 E-value=37 Score=27.27 Aligned_cols=58 Identities=7% Similarity=0.059 Sum_probs=36.6
Q ss_pred cccEEEecccC-----cCchhHHHHHHHHHHcCCCCeEEeeC-CcccCCCcchHHHHhch--hcCcEEEEE
Q 044631 9 NYEVFLNFRGE-----DTRKSFTCYLYDKLYEGKKIKTFIDD-EELRRGDEISPALLNAI--QGSKISVVI 71 (136)
Q Consensus 9 ~yDVFISys~~-----D~~~~fv~~L~~~L~~~~gi~vf~d~-~~i~~G~~~~~~i~~aI--~~S~~~I~v 71 (136)
.++|+|-.-+. +.....+..|++.|+. .|++|-+|. ++-.+| ..+..+- ......|+|
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~-~Gi~v~~D~~~~~~~g----~k~~~a~~~~gip~~iii 403 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLD-KGFRVAVKGSSKTGLS----SDVRHIESTAKPAVNVFI 403 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHH-TTCEEEEEEEETTTHH----HHHHHHHHTTCCSEEEEE
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHH-CCCEEEEecCCCCCHH----HHHHHHHHhcCCCEEEEE
Confidence 57887765441 2235678999999999 999999987 433334 3443333 345554443
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=27.89 E-value=1.4e+02 Score=19.93 Aligned_cols=27 Identities=4% Similarity=0.153 Sum_probs=19.5
Q ss_pred CC-CcchHHHHhchhcCcEEEEEeecCC
Q 044631 50 RG-DEISPALLNAIQGSKISVVIFSKDY 76 (136)
Q Consensus 50 ~G-~~~~~~i~~aI~~S~~~I~vlS~~y 76 (136)
|| +.+.......+..++.+|+|++.+-
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 44 4455556677889999999998653
No 68
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=27.57 E-value=1.7e+02 Score=22.10 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=47.9
Q ss_pred cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631 9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK 88 (136)
Q Consensus 9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~ 88 (136)
..||-|-|+..+ ....++...|+. |+.+.+-...+. +.-.+.|.++-++ .=++++|||.-.-.-+.+|..
T Consensus 88 ~aDVvIDFT~p~---a~~~~~~~~l~~--Gv~vViGTTG~~--~e~~~~L~~aa~~---~~~~~a~N~SiGv~ll~~l~~ 157 (288)
T 3ijp_A 88 NTEGILDFSQPQ---ASVLYANYAAQK--SLIHIIGTTGFS--KTEEAQIADFAKY---TTIVKSGNMSLGVNLLANLVK 157 (288)
T ss_dssp SCSEEEECSCHH---HHHHHHHHHHHH--TCEEEECCCCCC--HHHHHHHHHHHTT---SEEEECSCCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCHH---HHHHHHHHHHHc--CCCEEEECCCCC--HHHHHHHHHHhCc---CCEEEECCCcHHHHHHHHHHH
Confidence 689999998765 455666666666 999887543321 1112344444333 335999999998888887776
Q ss_pred HHHh
Q 044631 89 ILEC 92 (136)
Q Consensus 89 ~~~~ 92 (136)
.+..
T Consensus 158 ~aa~ 161 (288)
T 3ijp_A 158 RAAK 161 (288)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 69
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=26.97 E-value=29 Score=28.67 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHcCC-CCeEEeeCC-cccCCCcchHHH
Q 044631 23 KSFTCYLYDKLYEGK-KIKTFIDDE-ELRRGDEISPAL 58 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~-gi~vf~d~~-~i~~G~~~~~~i 58 (136)
...+..|++.|.. . ||+|-+|.+ +-.+|..+.+.-
T Consensus 322 ~~~a~~l~~~L~~-~~Girv~~Ddr~~~s~G~K~~~ae 358 (518)
T 3ial_A 322 LGKVNEIADTLKS-KLGLRVSIDDDFSKSMGDKLYYYE 358 (518)
T ss_dssp HHHHHHHHHHHHH-TTCCCEEECCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccCeEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999 9 999999987 667777666543
No 70
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=26.84 E-value=69 Score=24.93 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=35.7
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
+.+||+|..-+++. ...+..|++.|+. . ++|-+|.++ ..+...+..|- ......|+|
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~-~-i~v~~d~~~----~~~~~~~~~a~~~g~p~~iiv 384 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRP-R-LRAEYALAP----RKPAKGLEEALKRGAAFAGFL 384 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHh-c-CEEEEecCC----CCHHHHHHHHHhCCCCEEEEE
Confidence 45789886555443 4678899999999 8 999888653 23334443332 344444443
No 71
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=26.36 E-value=90 Score=21.42 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=39.2
Q ss_pred ccEEEecccCcCchhHHHHHHHHHHcCC--CCeEEee--------C-Cc-----ccCCCc-chHHHHhchhcCcEEEEEe
Q 044631 10 YEVFLNFRGEDTRKSFTCYLYDKLYEGK--KIKTFID--------D-EE-----LRRGDE-ISPALLNAIQGSKISVVIF 72 (136)
Q Consensus 10 yDVFISys~~D~~~~fv~~L~~~L~~~~--gi~vf~d--------~-~~-----i~~G~~-~~~~i~~aI~~S~~~I~vl 72 (136)
=.||||-+..|. .-+..+.+.|.. . |++++=- + .+ +.+|.. =.++|...|.+-.+-++|+
T Consensus 12 g~V~lsv~D~dK--~~~v~~ak~~~~-ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVIn 88 (152)
T 1b93_A 12 KHIALVAHDHCK--QMLMSWVERHQP-LLEQHVLYATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIF 88 (152)
T ss_dssp CEEEEEECGGGH--HHHHHHHHHTHH-HHTTSEEEEETTHHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEEEehhhH--HHHHHHHHHHHH-HhCCCEEEEccHHHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEE
Confidence 359999877773 334455566655 5 5555411 1 11 112221 2368999999999999999
Q ss_pred ecC
Q 044631 73 SKD 75 (136)
Q Consensus 73 S~~ 75 (136)
.++
T Consensus 89 t~~ 91 (152)
T 1b93_A 89 FWD 91 (152)
T ss_dssp ECC
T ss_pred cCC
Confidence 888
No 72
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=26.30 E-value=51 Score=26.53 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=36.7
Q ss_pred CcccEEEe-ccc-CcCchhHHHHHHHHHHcCCCCeEE--eeCCcccCCCcchHHHHhch-hcCcEEEEE
Q 044631 8 CNYEVFLN-FRG-EDTRKSFTCYLYDKLYEGKKIKTF--IDDEELRRGDEISPALLNAI-QGSKISVVI 71 (136)
Q Consensus 8 ~~yDVFIS-ys~-~D~~~~fv~~L~~~L~~~~gi~vf--~d~~~i~~G~~~~~~i~~aI-~~S~~~I~v 71 (136)
+.++|.|- -.+ ++.....+..|++.|++ .|++|. +|.+ .+..+...+.++= ......|+|
T Consensus 337 AP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~-~Gi~v~~~~Ddr---~~~sigkk~r~Ad~~GiP~~IiV 401 (454)
T 1g5h_A 337 APIKVALDVGKGPTVELRQVCQGLLNELLE-NGISVWPGYSET---VHSSLEQLHSKYDEMSVLFSVLV 401 (454)
T ss_dssp CSCCEEEEECSSCHHHHHHHHHHHHHHHHH-TTCCEEEGGGSC---CCSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEEeCCCcHHHHHHHHHHHHHHHH-CCCEEEEEecCC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 46888887 433 13235788999999999 999995 7753 1233444444332 344544443
No 73
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=26.06 E-value=70 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=22.7
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEee
Q 044631 7 SCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFID 44 (136)
Q Consensus 7 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d 44 (136)
+++++++++...+.. ..+.+.|.++.++ |+.|.+-
T Consensus 21 ~A~~el~lsi~~e~l-~~l~~~L~~A~~r--GV~V~li 55 (233)
T 2f5t_X 21 SAKNEVIVVTPSEFF-ETIREDLIKTLER--GVTVSLY 55 (233)
T ss_dssp TCSSEEEEEECGGGH-HHHHHHHHHHHHT--TCEEEEE
T ss_pred HhhhEEEEEeCHHHH-HHHHHHHHHHHHC--CCEEEEE
Confidence 458899998866543 3455555555554 9987754
No 74
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=25.04 E-value=77 Score=25.79 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=37.5
Q ss_pred CcccEEEecccC-c-CchhHHHHHHHHHHcCCC-CeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631 8 CNYEVFLNFRGE-D-TRKSFTCYLYDKLYEGKK-IKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI 71 (136)
Q Consensus 8 ~~yDVFISys~~-D-~~~~fv~~L~~~L~~~~g-i~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v 71 (136)
+.++|+|---++ + .....+..|++.|+. .| ++|-+|.. ..+...+..|=. ....+|+|
T Consensus 397 aP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~-~G~i~v~~D~~-----~sig~k~~~ad~~g~p~~iiv 458 (505)
T 1ati_A 397 APIKVAVIPLVKNRPEITEYAKRLKARLLA-LGLGRVLYEDT-----GNIGKAYRRHDEVGTPFAVTV 458 (505)
T ss_dssp CSCSEEEEESCSSCHHHHHHHHHHHHHHHT-TCSSCEEECCC-----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHhc-cCCEEEEECCC-----CCHHHHHHHHHHCCCCEEEEE
Confidence 368998775444 1 225778999999999 99 99998864 244444444333 44444444
No 75
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.01 E-value=2e+02 Score=20.86 Aligned_cols=55 Identities=13% Similarity=-0.102 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHcCCCCeEE-eeCCccc--CCC----cchHHHHhchhcCcEEEEEeecCCCCCH
Q 044631 24 SFTCYLYDKLYEGKKIKTF-IDDEELR--RGD----EISPALLNAIQGSKISVVIFSKDYASSK 80 (136)
Q Consensus 24 ~fv~~L~~~L~~~~gi~vf-~d~~~i~--~G~----~~~~~i~~aI~~S~~~I~vlS~~y~~S~ 80 (136)
..+..+.+.|+. .|+.+- +|-.++. ..+ +-..++.+.|.+++ .|++.||.|..+.
T Consensus 52 ~La~~~~~~l~~-~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~si 113 (247)
T 2q62_A 52 LLAEEARRLLEF-FGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGAM 113 (247)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSSC
T ss_pred HHHHHHHHHHhh-CCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCCc
Confidence 566777788887 888653 4433332 111 11346778888998 5677899998763
No 76
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=24.59 E-value=1.5e+02 Score=19.38 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=19.1
Q ss_pred CC-CcchHHHHhchhcCcEEEEEeecCCC
Q 044631 50 RG-DEISPALLNAIQGSKISVVIFSKDYA 77 (136)
Q Consensus 50 ~G-~~~~~~i~~aI~~S~~~I~vlS~~y~ 77 (136)
|| +.+.......+..++.+|+|++.+-.
T Consensus 79 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 107 (189)
T 2gf9_A 79 AGQERYRTITTAYYRGAMGFLLMYDIANQ 107 (189)
T ss_dssp CSCCSSCCSGGGGGTTCSEEEEEEETTCH
T ss_pred CCcHHHhhhHHHhccCCCEEEEEEECCCH
Confidence 44 33444455678899999999987543
No 77
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=24.02 E-value=1.1e+02 Score=21.72 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=39.7
Q ss_pred ccEEEecccCcCchhHHHHHHHHHHcCC--CCeEEe--------eC------CcccCCCc-chHHHHhchhcCcEEEEEe
Q 044631 10 YEVFLNFRGEDTRKSFTCYLYDKLYEGK--KIKTFI--------DD------EELRRGDE-ISPALLNAIQGSKISVVIF 72 (136)
Q Consensus 10 yDVFISys~~D~~~~fv~~L~~~L~~~~--gi~vf~--------d~------~~i~~G~~-~~~~i~~aI~~S~~~I~vl 72 (136)
=.||||-...|. .-+..+...|.. . |++++= .+ ..+.+|.. =.++|...|.+-.+-++|+
T Consensus 28 g~V~lsv~D~dK--~~lv~~ak~~~~-lL~Gf~L~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVIn 104 (178)
T 1vmd_A 28 KRIALIAHDRRK--RDLLEWVSFNLG-TLSKHELYATGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIF 104 (178)
T ss_dssp CEEEEEECGGGH--HHHHHHHHHSHH-HHTTSEEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEE
T ss_pred CEEEEEEehhhH--HHHHHHHHHHHH-HhcCCEEEEchHHHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEE
Confidence 359999877773 344455666665 5 555541 11 11222222 2468999999999999999
Q ss_pred ecC
Q 044631 73 SKD 75 (136)
Q Consensus 73 S~~ 75 (136)
.++
T Consensus 105 t~d 107 (178)
T 1vmd_A 105 FWD 107 (178)
T ss_dssp ECC
T ss_pred ccC
Confidence 888
No 78
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=24.02 E-value=1.5e+02 Score=19.91 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=22.1
Q ss_pred chHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHH
Q 044631 54 ISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILE 91 (136)
Q Consensus 54 ~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~ 91 (136)
+.......+..++.+|+|++.+- .....++...+.
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~---~~s~~~~~~~l~ 131 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTS---QQSFLNVRNWMS 131 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTC---HHHHHHHHHHHH
T ss_pred HHhHHHHHhcCCCEEEEEEECcC---HHHHHHHHHHHH
Confidence 33444567789999999998653 334445544444
No 79
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=23.92 E-value=45 Score=22.00 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHh-HHHHHHHHHHhh
Q 044631 24 SFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKW-CLNELVKILECK 93 (136)
Q Consensus 24 ~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~w-c~~El~~~~~~~ 93 (136)
.-...|..+.+. +|+.+|.|.+ .+|+.+...|.+.+..+. ...+.+.+..=.- ..+++..++...
T Consensus 39 ~~l~~I~~~~~~-r~VIi~TD~D--~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~~ 104 (119)
T 2fcj_A 39 ARLEELADELEG-YDVYLLADAD--EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLRA 104 (119)
T ss_dssp HHHHHHHHHTTT-SEEEEECCSS--HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCEEEEECCC--ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHhc
Confidence 345566777777 8999999876 488888888888888875 3444555542111 235666666643
No 80
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=23.75 E-value=1.6e+02 Score=19.34 Aligned_cols=21 Identities=5% Similarity=0.112 Sum_probs=15.8
Q ss_pred HHHhchhcCcEEEEEeecCCC
Q 044631 57 ALLNAIQGSKISVVIFSKDYA 77 (136)
Q Consensus 57 ~i~~aI~~S~~~I~vlS~~y~ 77 (136)
.....+..++.+|+|++.+-.
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~ 106 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRR 106 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCH
T ss_pred hHHHHhccCCEEEEEEECCCH
Confidence 345667889999999987543
No 81
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=23.44 E-value=1.6e+02 Score=19.07 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=20.2
Q ss_pred CCC-cchHHHHhchhcCcEEEEEeecCCCC
Q 044631 50 RGD-EISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 50 ~G~-~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
||. .+.......+..++.+|+|++.+-..
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 96 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRE 96 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHH
Confidence 443 44445567788999999999876443
No 82
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=23.40 E-value=84 Score=20.25 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=18.3
Q ss_pred chHHHHhchhcCcEEEEEeecCCCCC
Q 044631 54 ISPALLNAIQGSKISVVIFSKDYASS 79 (136)
Q Consensus 54 ~~~~i~~aI~~S~~~I~vlS~~y~~S 79 (136)
+.......+..++.+|+|++.+-..|
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s 94 (178)
T 2hxs_A 69 GGKMLDKYIYGAQGVLLVYDITNYQS 94 (178)
T ss_dssp TCTTHHHHHTTCSEEEEEEETTCHHH
T ss_pred ccchhhHHHhhCCEEEEEEECCCHHH
Confidence 33344566889999999999764433
No 83
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=23.15 E-value=1.1e+02 Score=24.35 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=36.7
Q ss_pred cCcCchhHHHHHHHHHHcCC-CCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEe
Q 044631 18 GEDTRKSFTCYLYDKLYEGK-KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIF 72 (136)
Q Consensus 18 ~~D~~~~fv~~L~~~L~~~~-gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vl 72 (136)
..|.|++=+..|.+.|.+ . |..|.+.+-..... .....+.++++.++.+|+..
T Consensus 329 tdD~ReSpa~~i~~~L~~-~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t 382 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQ-EPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILS 382 (431)
T ss_dssp SCCCTTCHHHHHHHHHHH-STTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECS
T ss_pred CcchhcChHHHHHHHHHh-hcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEec
Confidence 356778888999999999 8 99987654323222 23345678899999765544
No 84
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=22.95 E-value=49 Score=27.26 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=34.3
Q ss_pred CcccEEEecccC---------cCchhHHHHHHHHHHcCCCCeEEeeCCc-ccCCCcchHH
Q 044631 8 CNYEVFLNFRGE---------DTRKSFTCYLYDKLYEGKKIKTFIDDEE-LRRGDEISPA 57 (136)
Q Consensus 8 ~~yDVFISys~~---------D~~~~fv~~L~~~L~~~~gi~vf~d~~~-i~~G~~~~~~ 57 (136)
+.++|.|-=-+. +.....+..|++.|+. .||+|-+|.++ -.+|..+.+.
T Consensus 307 aP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~-~Girv~~Ddr~~~s~G~K~~~a 365 (519)
T 4hvc_A 307 ACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLS-VNIRVRADLRDNYSPGWKFNHW 365 (519)
T ss_dssp CSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHH-TTCCEEECCCSSSCHHHHHHHH
T ss_pred CCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHH
Confidence 467887643331 2224678999999999 99999999876 3577655543
No 85
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=22.93 E-value=61 Score=25.98 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=31.7
Q ss_pred CcCchhHHHHHHHHHHcCCCCeEEeeCCccc----CCCcchHHHHhchhcCcEEE
Q 044631 19 EDTRKSFTCYLYDKLYEGKKIKTFIDDEELR----RGDEISPALLNAIQGSKISV 69 (136)
Q Consensus 19 ~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~----~G~~~~~~i~~aI~~S~~~I 69 (136)
.|.|++=+..|.+.|.. .|..|.+.+-... .|....+.+.++++.++++|
T Consensus 347 dD~R~Sp~~~i~~~L~~-~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKA-KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHH-TTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHh-cCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 45677778899999999 9998765432222 23334567788889998754
No 86
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=22.85 E-value=1.6e+02 Score=21.46 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=32.6
Q ss_pred HHHHcCCCCeEE-eeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCC-HhHHHHHHHHHH
Q 044631 31 DKLYEGKKIKTF-IDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASS-KWCLNELVKILE 91 (136)
Q Consensus 31 ~~L~~~~gi~vf-~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S-~wc~~El~~~~~ 91 (136)
..++. .|.++- ++.. -..+-.+ +.+.+++.. ..+|++.+|+.... .+..+++..+.+
T Consensus 113 ~~~~~-~g~~~~~~~~~-~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~ 171 (361)
T 3ftb_A 113 INAKK-HGVSVVFSYLD-ENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLK 171 (361)
T ss_dssp HHHHH-TTCEEEEEECC-TTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHH
T ss_pred HHHHH-cCCeEEEeecC-cccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 34555 677653 4322 1112223 678888877 66777888865543 344556666655
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=22.66 E-value=1.8e+02 Score=19.62 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=20.0
Q ss_pred CCC-cchHHHHhchhcCcEEEEEeecCCCC
Q 044631 50 RGD-EISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 50 ~G~-~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
+|. .+.......++.++.+|+|++..-..
T Consensus 83 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~ 112 (201)
T 2ew1_A 83 AGQERFRSITQSYYRSANALILTYDITCEE 112 (201)
T ss_dssp CCSGGGHHHHGGGSTTCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 554 34444557788999999999865443
No 88
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=22.55 E-value=93 Score=24.91 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=40.6
Q ss_pred cCcCchhHHHHHHHHHHcCCCCeEEeeCCccc-------CCCcchHHHHhchhcCcEEEEEee-cCCCCCHh
Q 044631 18 GEDTRKSFTCYLYDKLYEGKKIKTFIDDEELR-------RGDEISPALLNAIQGSKISVVIFS-KDYASSKW 81 (136)
Q Consensus 18 ~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~-------~G~~~~~~i~~aI~~S~~~I~vlS-~~y~~S~w 81 (136)
..|.|++=+..|.+.|.+ .|..|...+-... ++-.+.+...++++.++.+|++.. +.|..=.|
T Consensus 336 ~dD~ReSp~~~i~~~L~~-~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQD-AGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp SCCCTTCSHHHHHHHHHH-TSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred CcccccChHHHHHHHHHH-CCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 346677778899999999 9999875432221 344445566788999997655443 23544334
No 89
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=21.07 E-value=1.7e+02 Score=18.68 Aligned_cols=29 Identities=3% Similarity=0.142 Sum_probs=16.4
Q ss_pred CCC-cchHHHHhchhcCcEEEEEeecCCCC
Q 044631 50 RGD-EISPALLNAIQGSKISVVIFSKDYAS 78 (136)
Q Consensus 50 ~G~-~~~~~i~~aI~~S~~~I~vlS~~y~~ 78 (136)
||. .+.......+..++.+|+|++.+-..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 97 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKA 97 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHH
Confidence 443 34444556788999999999876433
No 90
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.78 E-value=2.3e+02 Score=19.94 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=41.4
Q ss_pred cEEEecccCc-CchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHH
Q 044631 11 EVFLNFRGED-TRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNEL 86 (136)
Q Consensus 11 DVFISys~~D-~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El 86 (136)
=+||-|.+.+ ....++..+.++|++ .|+.+-.-. +.. .-.+.+.+.|++++.+++ |. -++..++..|
T Consensus 30 i~~Ip~As~~~~~~~~~~s~~~a~~~-lG~~v~~~~--i~~--~~~~~~~~~l~~ad~I~l---~G-G~~~~l~~~L 97 (206)
T 3l4e_A 30 VTFIPTASTVEEVTFYVEAGKKALES-LGLLVEELD--IAT--ESLGEITTKLRKNDFIYV---TG-GNTFFLLQEL 97 (206)
T ss_dssp EEEECGGGGGCSCCHHHHHHHHHHHH-TTCEEEECC--TTT--SCHHHHHHHHHHSSEEEE---CC-SCHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH-cCCeEEEEE--ecC--CChHHHHHHHHhCCEEEE---CC-CCHHHHHHHH
Confidence 3599997752 124688899999999 999864321 211 123455677888887554 33 4444555544
No 91
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=20.18 E-value=23 Score=21.61 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=21.3
Q ss_pred hchhcCcEEEEEeecCCCCCHhHHHHHHHHHHh
Q 044631 60 NAIQGSKISVVIFSKDYASSKWCLNELVKILEC 92 (136)
Q Consensus 60 ~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~~ 92 (136)
..+.++.++++|+|++-.-..|+-..+..++++
T Consensus 35 svLCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 35 SVLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HHHTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred hcccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 346789999999999855444543344444443
No 92
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=20.06 E-value=2e+02 Score=18.98 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHcCCCCeEE-eeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCC
Q 044631 23 KSFTCYLYDKLYEGKKIKTF-IDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASS 79 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~vf-~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S 79 (136)
+..+..|.+.|.. .|+.+- +|-.+ .-...+...+.+++ .|++-||.|...
T Consensus 15 ~~~A~~ia~~l~~-~g~~v~~~~~~~-----~~~~~~~~~~~~~d-~ii~Gspty~g~ 65 (161)
T 3hly_A 15 DRLSQAIGRGLVK-TGVAVEMVDLRA-----VDPQELIEAVSSAR-GIVLGTPPSQPS 65 (161)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEETTT-----CCHHHHHHHHHHCS-EEEEECCBSSCC
T ss_pred HHHHHHHHHHHHh-CCCeEEEEECCC-----CCHHHHHHHHHhCC-EEEEEcCCcCCc
Confidence 5788999999999 898753 33221 11234445566676 567779998643
No 93
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=20.06 E-value=2e+02 Score=19.21 Aligned_cols=53 Identities=9% Similarity=-0.096 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHcCCCCeE-EeeCCcccCC-------------CcchHHHHhchhcCcEEEEEeecCCCCC
Q 044631 23 KSFTCYLYDKLYEGKKIKT-FIDDEELRRG-------------DEISPALLNAIQGSKISVVIFSKDYASS 79 (136)
Q Consensus 23 ~~fv~~L~~~L~~~~gi~v-f~d~~~i~~G-------------~~~~~~i~~aI~~S~~~I~vlS~~y~~S 79 (136)
...+..+.+.|+. .|+.+ .++-.+..++ ..+. . .+.+.+++ .|++-||.|..+
T Consensus 18 ~~la~~i~~~l~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~-~-~~~l~~aD-~ii~gsP~y~~~ 84 (199)
T 2zki_A 18 VELAKEIGKGAEE-AGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEV-T-LDDMRWAD-GFAIGSPTRYGN 84 (199)
T ss_dssp HHHHHHHHHHHHH-HSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBC-C-HHHHHHCS-EEEEEEECBTTB
T ss_pred HHHHHHHHHHHHh-CCCEEEEEehhHhCChhhhhccCCCcccccccc-c-HHHHHhCC-EEEEECCccccC
Confidence 4677888888887 78765 3333222111 0111 1 45667777 567789999865
Done!