BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044635
(831 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 211/394 (53%), Gaps = 29/394 (7%)
Query: 148 YYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWV 207
YY+ F LWP FHY L L +F R W Y+ VN + AD+++ ++ +DD +W+
Sbjct: 76 YYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIWI 129
Query: 208 HDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREEILRALLNSDLIGFHTFD 267
HDYHL+ LRKR ++GFFLH PFP+ EI+ LP + +L L + DL+GF T +
Sbjct: 130 HDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTEN 189
Query: 268 YARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQL--QSVLSLPGTEA 325
FL C S + +T S + + +G+ ++ P+GI ++ Q+ LP A
Sbjct: 190 DRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLA 246
Query: 326 KVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPAR 385
++ +K + + V+ +D KG+ + LA E LL ++P+ GK+ QIA +R
Sbjct: 247 QLKAELKNVQN-----IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR 301
Query: 386 GRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVR 445
G + ++++ + + RIN +G+ G+ P+ +++ + + ++ LVT +R
Sbjct: 302 GDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLR 361
Query: 446 DG-----------SEPSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVSDAMDSALEM 494
DG +P++P +LV+S+F G + L+ A+ VNP++ D V+ A+D AL M
Sbjct: 362 DGMNLVAKEYVAAQDPANP--GVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTM 419
Query: 495 ADQEKQLRHEKHYRYVSTHDVGYWARSFLQDLER 528
+ E+ RH + + +D+ +W F+ DL++
Sbjct: 420 SLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 211/394 (53%), Gaps = 29/394 (7%)
Query: 148 YYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWV 207
YY+ F LWP FHY L L +F R W Y+ VN + AD+++ ++ +DD +W+
Sbjct: 76 YYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIWI 129
Query: 208 HDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREEILRALLNSDLIGFHTFD 267
HDYHL+ LRKR ++GFFLH PFP+ EI+ LP + +L L + DL+GF T +
Sbjct: 130 HDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTEN 189
Query: 268 YARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQL--QSVLSLPGTEA 325
FL C S + +T S + + +G+ ++ P+GI ++ Q+ LP A
Sbjct: 190 DRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLA 246
Query: 326 KVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPAR 385
++ +K + + V+ +D KG+ + LA E LL ++P+ GK+ QIA +R
Sbjct: 247 QLKAELKNVQN-----IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR 301
Query: 386 GRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVR 445
G + ++++ + + RIN +G+ G+ P+ +++ + + ++ LVT +R
Sbjct: 302 GDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLR 361
Query: 446 DG-----------SEPSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVSDAMDSALEM 494
DG +P++P +LV+S+F G + L+ A+ VNP++ D V+ A+D AL M
Sbjct: 362 DGMNLVAKEYVAAQDPANP--GVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTM 419
Query: 495 ADQEKQLRHEKHYRYVSTHDVGYWARSFLQDLER 528
+ E+ RH + + +D+ +W F+ DL++
Sbjct: 420 SLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 212/396 (53%), Gaps = 33/396 (8%)
Query: 148 YYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWV 207
YY+ F LWP FHY L L +F R W Y+ VN + AD+++ ++ +DD +W+
Sbjct: 75 YYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIWI 128
Query: 208 HDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREEILRALLNSDLIGFHTFD 267
HDYHL+ LRKR ++GFFLH PFP+ EI+ LP + +L L + DL+GF T +
Sbjct: 129 HDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTEN 188
Query: 268 YARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQL--QSVLSLPGTEA 325
FL C S + +T S + + +G+ ++ P+GI ++ Q+ LP A
Sbjct: 189 DRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLA 245
Query: 326 KVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPAR 385
++ +K + + V+ +D KG+ + LA E LL ++P+ GK+ QIA +R
Sbjct: 246 QLKAELKNVQN-----IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR 300
Query: 386 GRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPL--KFYERIAYYVVAECCLVTA 443
G + ++++ + + RIN +G+ G+ P+ +++ K +I Y ++ LVT
Sbjct: 301 GDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFRY--SDVGLVTP 358
Query: 444 VRDG-----------SEPSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVSDAMDSAL 492
+RDG +P++P +LV+S+F G + L+ A+ VNP++ D V+ A+D AL
Sbjct: 359 LRDGXNLVAKEYVAAQDPANP--GVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRAL 416
Query: 493 EMADQEKQLRHEKHYRYVSTHDVGYWARSFLQDLER 528
+ E+ RH + + +D+ +W F+ DL++
Sbjct: 417 TXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQ 452
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 173 GRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVW-VHDYHLMVLPTFLRKRFNRVKLGFF 231
G R W + + FAD I++ D V+ VHDY L+ +P LR++ + F
Sbjct: 120 GSDAREGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLF 179
Query: 232 LHSPFPSSEIYKTLP--IREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRG 289
+H P+PS++ ++ LP IR IL +L + IGF + R+FL + +L R
Sbjct: 180 VHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDRE 238
Query: 290 YIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVML 342
+ +E+ G ++ +P+G S L+L G ++ E I+++ D ++++
Sbjct: 239 AMTVEWRGHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVV 285
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 173 GRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVW-VHDYHLMVLPTFLRKRFNRVKLGFF 231
G R W + + FAD I++ D V+ VHDY L+ +P LR++ + F
Sbjct: 121 GSDAREGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLF 180
Query: 232 LHSPFPSSEIYKTLP--IREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRG 289
+H P+PS++ ++ LP IR IL +L + IGF + R+FL + +L R
Sbjct: 181 VHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDRE 239
Query: 290 YIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVML 342
+ +E+ G ++ +P+G S L+L G ++ E I+++ D ++++
Sbjct: 240 AMTVEWRGHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVV 286
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 173 GRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVW-VHDYHLMVLPTFLRKRFNRVKLGFF 231
G R W + + FAD I++ D V+ VHDY L+ +P LR++ + F
Sbjct: 121 GSDAREGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLF 180
Query: 232 LHSPFPSSEIYKTLP--IREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRG 289
+H P+PS++ ++ LP IR IL L + IGF + R+FL + +L R
Sbjct: 181 VHIPWPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLP-DARIDRE 239
Query: 290 YIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVML 342
+E+ G ++ P+G S L+L G ++ E I+++ D ++++
Sbjct: 240 AXTVEWRGHRTRLRTXPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVV 286
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 320 LPGTEA-KVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEW 371
LPG + + ++ +FH +G V+ V D FKG+ L A+E ++ HP++
Sbjct: 104 LPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGL-FKAIEGYVLAHPDY 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,803,206
Number of Sequences: 62578
Number of extensions: 977318
Number of successful extensions: 2455
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2422
Number of HSP's gapped (non-prelim): 21
length of query: 831
length of database: 14,973,337
effective HSP length: 107
effective length of query: 724
effective length of database: 8,277,491
effective search space: 5992903484
effective search space used: 5992903484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)