Query 044637
Match_columns 370
No_of_seqs 237 out of 3757
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.4E-26 5.1E-31 238.4 15.4 151 61-216 113-269 (968)
2 PLN00113 leucine-rich repeat r 99.9 4.4E-26 9.6E-31 236.4 15.3 206 64-273 138-370 (968)
3 PLN03210 Resistant to P. syrin 99.9 2.8E-25 6.1E-30 231.5 19.2 326 11-347 487-906 (1153)
4 KOG0444 Cytoskeletal regulator 99.9 1.2E-26 2.5E-31 212.9 -2.7 275 57-344 94-373 (1255)
5 KOG0444 Cytoskeletal regulator 99.9 9.7E-25 2.1E-29 200.4 -6.6 280 52-344 64-350 (1255)
6 KOG4658 Apoptotic ATPase [Sign 99.9 3.9E-22 8.5E-27 198.9 10.1 160 7-168 476-651 (889)
7 KOG4194 Membrane glycoprotein 99.9 5.3E-23 1.2E-27 187.5 0.6 279 59-344 95-427 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 6.7E-24 1.5E-28 185.4 -6.0 285 51-344 99-539 (565)
9 KOG4194 Membrane glycoprotein 99.8 3E-22 6.4E-27 182.7 2.0 283 59-351 142-463 (873)
10 PLN03210 Resistant to P. syrin 99.8 1.3E-19 2.8E-24 189.3 17.1 246 64-325 609-909 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.8E-22 4E-27 176.5 -10.1 266 63-344 42-308 (565)
12 KOG0618 Serine/threonine phosp 99.8 5.5E-21 1.2E-25 182.8 -5.9 104 235-343 359-462 (1081)
13 KOG0617 Ras suppressor protein 99.7 5.8E-19 1.3E-23 137.8 -5.7 169 63-245 30-200 (264)
14 PRK15370 E3 ubiquitin-protein 99.7 2.3E-16 5.1E-21 155.5 10.6 244 66-344 178-426 (754)
15 PRK15387 E3 ubiquitin-protein 99.7 8.8E-16 1.9E-20 150.8 13.3 238 66-344 201-456 (788)
16 KOG0618 Serine/threonine phosp 99.6 6.7E-18 1.5E-22 161.9 -4.0 187 148-344 253-487 (1081)
17 PRK15370 E3 ubiquitin-protein 99.6 4.7E-15 1E-19 146.4 8.6 224 66-321 199-427 (754)
18 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.9E-19 142.6 10.4 226 66-329 222-465 (788)
19 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.4E-22 127.6 -5.9 152 51-206 41-195 (264)
20 cd00116 LRR_RI Leucine-rich re 99.5 1.1E-15 2.5E-20 138.9 -0.5 265 57-344 14-318 (319)
21 KOG4237 Extracellular matrix p 99.5 6.8E-16 1.5E-20 135.4 -7.0 266 67-343 68-356 (498)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.2E-14 2.6E-19 132.2 -1.1 250 70-344 2-289 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.3 4.9E-12 1.1E-16 127.1 9.0 151 64-216 521-677 (889)
24 KOG4237 Extracellular matrix p 99.2 8.6E-13 1.9E-17 116.2 -4.4 252 58-321 83-358 (498)
25 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.7E-17 117.2 -3.2 193 65-269 74-270 (722)
26 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 109.6 0.4 232 86-344 118-365 (505)
27 KOG4341 F-box protein containi 99.1 4.7E-12 1E-16 112.4 -4.5 120 232-353 318-446 (483)
28 COG4886 Leucine-rich repeat (L 99.0 3.4E-10 7.4E-15 106.1 6.4 174 66-273 116-291 (394)
29 PF14580 LRR_9: Leucine-rich r 99.0 8.7E-10 1.9E-14 89.6 6.8 130 64-216 17-149 (175)
30 KOG0532 Leucine-rich repeat (L 98.9 3.4E-11 7.4E-16 110.9 -5.0 154 57-216 89-243 (722)
31 KOG2120 SCF ubiquitin ligase, 98.9 8.3E-12 1.8E-16 106.3 -9.0 182 136-322 186-376 (419)
32 KOG3207 Beta-tubulin folding c 98.9 9.3E-11 2E-15 104.8 -2.9 201 63-272 118-339 (505)
33 KOG1909 Ran GTPase-activating 98.9 3E-10 6.4E-15 98.9 0.0 251 58-321 22-310 (382)
34 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.4E-14 92.8 1.0 220 86-322 179-412 (490)
35 KOG1909 Ran GTPase-activating 98.8 1.2E-09 2.6E-14 95.2 0.2 236 84-344 25-309 (382)
36 KOG1259 Nischarin, modulator o 98.8 7.9E-10 1.7E-14 94.5 -1.2 125 65-192 283-410 (490)
37 COG4886 Leucine-rich repeat (L 98.8 4.2E-09 9.2E-14 98.7 3.3 156 56-216 129-286 (394)
38 KOG2120 SCF ubiquitin ligase, 98.7 3.9E-10 8.5E-15 96.2 -5.1 183 90-296 186-374 (419)
39 PF14580 LRR_9: Leucine-rich r 98.7 1.4E-08 2.9E-13 82.7 4.0 106 63-170 39-151 (175)
40 PLN03150 hypothetical protein; 98.6 1.4E-07 3E-12 93.1 8.4 76 68-143 420-498 (623)
41 KOG4341 F-box protein containi 98.5 1.5E-09 3.3E-14 96.7 -6.0 249 90-344 139-412 (483)
42 PF13855 LRR_8: Leucine rich r 98.5 1.8E-07 4E-12 62.4 4.5 58 66-123 1-60 (61)
43 PLN03150 hypothetical protein; 98.4 5.6E-07 1.2E-11 88.8 6.2 106 237-344 420-526 (623)
44 PF13855 LRR_8: Leucine rich r 98.4 3.3E-07 7.2E-12 61.1 3.1 57 89-146 1-59 (61)
45 KOG2982 Uncharacterized conser 98.3 3.1E-07 6.8E-12 78.8 1.9 86 182-272 174-262 (418)
46 KOG0531 Protein phosphatase 1, 98.3 9E-08 2E-12 90.1 -1.8 243 63-323 69-319 (414)
47 PF12799 LRR_4: Leucine Rich r 98.3 1.2E-06 2.7E-11 53.7 3.8 39 90-128 2-40 (44)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.3E-11 53.3 2.9 40 66-105 1-40 (44)
49 KOG0531 Protein phosphatase 1, 98.1 4.1E-07 9E-12 85.7 -0.9 220 62-296 91-316 (414)
50 KOG2982 Uncharacterized conser 98.1 5.2E-07 1.1E-11 77.5 -0.8 63 235-298 199-262 (418)
51 KOG3665 ZYG-1-like serine/thre 98.0 1.2E-06 2.7E-11 86.5 0.6 77 66-143 122-203 (699)
52 KOG1859 Leucine-rich repeat pr 98.0 1.1E-07 2.4E-12 90.6 -6.6 120 91-216 166-288 (1096)
53 PRK15386 type III secretion pr 98.0 2.3E-05 5E-10 71.8 7.4 156 62-245 48-210 (426)
54 KOG3665 ZYG-1-like serine/thre 97.9 5.1E-06 1.1E-10 82.2 3.1 100 90-191 123-230 (699)
55 KOG4579 Leucine-rich repeat (L 97.9 4.2E-06 9E-11 63.8 1.7 94 59-153 46-140 (177)
56 PRK15386 type III secretion pr 97.8 5.1E-05 1.1E-09 69.7 6.8 107 67-191 73-187 (426)
57 KOG4579 Leucine-rich repeat (L 97.6 4.9E-06 1.1E-10 63.5 -1.9 100 66-166 27-130 (177)
58 COG5238 RNA1 Ran GTPase-activa 97.6 4.5E-05 9.7E-10 65.0 3.2 248 63-321 27-315 (388)
59 KOG1859 Leucine-rich repeat pr 97.6 6.9E-07 1.5E-11 85.4 -8.4 81 62-145 183-264 (1096)
60 KOG1947 Leucine rich repeat pr 97.5 8.4E-06 1.8E-10 78.4 -3.4 99 235-344 335-438 (482)
61 KOG1644 U2-associated snRNP A' 97.2 0.00029 6.4E-09 57.5 3.6 100 90-191 43-150 (233)
62 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 54.2 5.0 103 66-170 42-151 (233)
63 KOG2123 Uncharacterized conser 96.9 0.00012 2.5E-09 62.8 -1.4 80 61-141 36-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00064 1.4E-08 57.8 2.7 106 63-170 40-154 (260)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00089 1.9E-08 57.0 3.4 91 62-153 61-160 (260)
66 COG5238 RNA1 Ran GTPase-activa 96.6 0.00048 1E-08 59.0 -0.2 233 86-343 27-313 (388)
67 KOG1947 Leucine rich repeat pr 96.6 0.0003 6.5E-09 67.7 -2.0 32 313-344 380-412 (482)
68 KOG2123 Uncharacterized conser 96.5 0.00013 2.8E-09 62.5 -3.9 102 63-167 16-125 (388)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0017 3.7E-08 33.1 0.5 17 91-107 2-18 (22)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0049 1.1E-07 31.4 0.5 21 113-133 1-21 (22)
71 KOG3864 Uncharacterized conser 95.2 0.00085 1.8E-08 54.9 -4.4 87 236-323 102-190 (221)
72 PF13504 LRR_7: Leucine rich r 94.9 0.018 4E-07 27.1 1.4 15 90-104 2-16 (17)
73 PF13306 LRR_5: Leucine rich r 94.5 0.09 2E-06 40.4 5.3 80 61-143 7-89 (129)
74 KOG0473 Leucine-rich repeat pr 93.7 0.0019 4.1E-08 54.1 -5.7 81 63-143 39-119 (326)
75 PF13306 LRR_5: Leucine rich r 93.6 0.19 4E-06 38.6 5.5 102 84-190 7-112 (129)
76 KOG3864 Uncharacterized conser 93.4 0.0057 1.2E-07 50.2 -3.3 82 261-344 103-187 (221)
77 smart00369 LRR_TYP Leucine-ric 91.3 0.22 4.8E-06 26.2 2.3 19 112-130 2-20 (26)
78 smart00370 LRR Leucine-rich re 91.3 0.22 4.8E-06 26.2 2.3 19 112-130 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 90.8 0.25 5.4E-06 26.0 2.1 21 88-108 1-21 (26)
80 smart00370 LRR Leucine-rich re 90.8 0.25 5.4E-06 26.0 2.1 21 88-108 1-21 (26)
81 KOG0473 Leucine-rich repeat pr 90.0 0.016 3.4E-07 48.8 -4.4 84 84-168 37-120 (326)
82 smart00367 LRR_CC Leucine-rich 79.6 1.3 2.8E-05 23.2 1.4 16 308-323 1-16 (26)
83 smart00364 LRR_BAC Leucine-ric 76.0 1.8 3.9E-05 22.9 1.2 17 90-106 3-19 (26)
84 smart00365 LRR_SD22 Leucine-ri 71.4 3.6 7.9E-05 21.7 1.7 15 112-126 2-16 (26)
85 PF13516 LRR_6: Leucine Rich r 66.7 4.8 0.0001 20.4 1.6 22 180-203 1-22 (24)
86 KOG4308 LRR-containing protein 64.1 0.077 1.7E-06 50.7 -9.8 43 301-344 396-443 (478)
87 smart00368 LRR_RI Leucine rich 59.6 7.7 0.00017 20.7 1.6 13 90-102 3-15 (28)
88 KOG3763 mRNA export factor TAP 46.3 5 0.00011 38.5 -0.8 37 232-269 216-254 (585)
89 KOG3763 mRNA export factor TAP 41.3 16 0.00035 35.2 1.7 60 63-123 215-281 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.4e-26 Score=238.41 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=80.3
Q ss_pred HhccCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCc-ccChhhhcCCCCcEEecCCCcC-ccccHHHhccccC
Q 044637 61 FCKKFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLK-CLPSLLCTLINLQTLEMPSSYI-DHSPEDIWMMLKL 137 (370)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L 137 (370)
++..+++|++|++++|.++ .+|. +.+++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred HhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 3446677777777766665 3332 33555666666665554 4555555556666666655532 3455555555555
Q ss_pred cEEEccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEE
Q 044637 138 MHLNFGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL 214 (370)
Q Consensus 138 ~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 214 (370)
++|+++ +|. .+.+|..++++++|+.|++..+. ...|..++.+++|+.|++++|. ..+.+|..++++++|+.|++
T Consensus 191 ~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 191 EFLTLA-SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred Ceeecc-CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce--eccccChhHhCCCCCCEEEC
Confidence 555555 333 33445555555555555544444 3444455555555555555543 33344444445555555544
Q ss_pred ec
Q 044637 215 VN 216 (370)
Q Consensus 215 ~~ 216 (370)
+.
T Consensus 268 ~~ 269 (968)
T PLN00113 268 YQ 269 (968)
T ss_pred cC
Confidence 43
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=4.4e-26 Score=236.40 Aligned_cols=206 Identities=24% Similarity=0.322 Sum_probs=116.2
Q ss_pred cCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCc-ccChhhhcCCCCcEEecCCCcC-ccccHHHhccccCcEE
Q 044637 64 KFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLK-CLPSLLCTLINLQTLEMPSSYI-DHSPEDIWMMLKLMHL 140 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L 140 (370)
.+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4556666666666655 55555666666666666666554 5555666666666666666633 3455556666666666
Q ss_pred EccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec-
Q 044637 141 NFGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN- 216 (370)
Q Consensus 141 ~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~- 216 (370)
+++ +|. ...+|..++++++|++|++.++. ...|..++.+++|+.|+++++. ..+.+|.++..+++|+.|++++
T Consensus 218 ~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 218 YLG-YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK--LSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ECc-CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe--eeccCchhHhhccCcCEEECcCC
Confidence 666 333 44555555666666666655554 3455555556666666665553 4444555555555555555554
Q ss_pred --CCCcc-------ccceEEE-----------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccC
Q 044637 217 --EGNMR-------QLSRMIL-----------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLE 273 (370)
Q Consensus 217 --~~~~~-------~L~~L~l-----------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 273 (370)
.+... +|+.|.+ ++..+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 11100 3444433 23345 566666666666655666666666666666666665543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.8e-25 Score=231.49 Aligned_cols=326 Identities=20% Similarity=0.195 Sum_probs=179.7
Q ss_pred EEecChhhhHHHHHHhcCc--------EEEeCCCCCc-----cccCCcccccccchh----hhhhHHHhccCCeeeEEEc
Q 044637 11 ACYVPSLEFTSLALMAEKT--------IFVWNPGMEE-----ESLSNVKRSKTDHLA----LIQCENFCKKFKHLRVLNL 73 (370)
Q Consensus 11 ~~~mHdli~~d~a~~i~~~--------~~~~~~~~~~-----~~~~~~~r~ls~~~~----~~~~~~~~~~~~~L~~L~L 73 (370)
.++|||++ ||||++++.. ...++..... ......++.++.... ...-...|..|++|+.|.+
T Consensus 487 ~~~MHdLl-~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 487 IVEMHSLL-QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred eEEhhhHH-HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 47899999 9999999821 1222211000 001123344331111 1112344666777777766
Q ss_pred CCCC------cc-cCCcccCCcC-CCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 74 GSAV------LD-QYPPGLENFF-YLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 74 ~~~~------~~-~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
..+. +. .+|..+..++ +||+|.+.++.+..+|..+ ...+|+.|++.++.+..+|.++..+++|+.|+++ +
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls-~ 643 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLR-G 643 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECC-C
Confidence 5432 12 3444444432 3555555555555555444 3455555555555555555555555555555555 3
Q ss_pred cC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC-----
Q 044637 146 TL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE----- 217 (370)
Q Consensus 146 ~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~----- 217 (370)
+. ...+| .++.+++|++|++.+|. ..+|..++.+++|+.|++++|. ....+|..+ ++++|+.|+++++
T Consensus 644 ~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 644 SKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE--NLEILPTGI-NLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC--CcCccCCcC-CCCCCCEEeCCCCCCccc
Confidence 32 33333 24445555555554444 4444455555555555555543 333333322 3444444444331
Q ss_pred ----------------C-Ccc-------ccceEEEe-----------------cCCCCCCceEEEEeccCCCCCCccccc
Q 044637 218 ----------------G-NMR-------QLSRMILS-----------------EYKFPPSLTQLSLSNTELMEDPMPTLE 256 (370)
Q Consensus 218 ----------------~-~~~-------~L~~L~l~-----------------~~~~p~~L~~L~l~~~~~~~~~~~~l~ 256 (370)
. ..+ +|++|.+. ....|++|+.|++++|......|..++
T Consensus 720 ~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 720 FPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred cccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 0 000 22222210 011236788888888876677888888
Q ss_pred CCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC--------------------ceeEeCCCCCCCcceEee
Q 044637 257 ELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL--------------------EEWTMGAGAMPKLESLIL 316 (370)
Q Consensus 257 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--------------------~~i~~~~~~l~~L~~L~l 316 (370)
++++|+.|++++|...+.. +.. ..+++|+.|++++|..+ +++|..+..+++|+.|++
T Consensus 800 ~L~~L~~L~Ls~C~~L~~L-P~~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETL-PTG--INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred CCCCCCEEECCCCCCcCee-CCC--CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEEC
Confidence 8999999999877543322 222 24556666666665444 445555677889999999
Q ss_pred cCCcccCCCchhcccCCCCcEEEecCCCHHH
Q 044637 317 NPCAYLRKLPEELWCIKSLCKLELHWPQPEL 347 (370)
Q Consensus 317 ~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~l 347 (370)
.+|..++.+|..+..+++|+.+++.+|+ .+
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~-~L 906 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCG-AL 906 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCc-cc
Confidence 9999998888888889999999999987 44
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-26 Score=212.92 Aligned_cols=275 Identities=20% Similarity=0.242 Sum_probs=196.7
Q ss_pred hhHHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCccccHHHhccc
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDHSPEDIWMML 135 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 135 (370)
.+++-+.++..|++|||++|.+..+|..+..-+++-+|+|++|+|+++|.. +.+|+.|-+||+++|.++.+|+.+..|.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 334444555666666666666666666666566666666666666666543 3456666666666666666666666666
Q ss_pred cCcEEEccCCcCCCCC-CCCCCCCCCCceeccccCC---CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCE
Q 044637 136 KLMHLNFGSITLPAPP-KNNSSTLKNLIFISALHPG---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC 211 (370)
Q Consensus 136 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 211 (370)
+|+.|+++ ++....+ ...+..+++|+.|.+++.+ ..+|..+..+.+|+.++++.+ ....+|+.+.++++|+.
T Consensus 174 ~LqtL~Ls-~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 174 MLQTLKLS-NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRR 249 (1255)
T ss_pred hhhhhhcC-CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhhe
Confidence 66666666 4431111 1223345555555555554 556666777777777777766 56667777777777777
Q ss_pred EEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEE
Q 044637 212 LKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILH 291 (370)
Q Consensus 212 L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 291 (370)
|++++.. +++|.+..+.- .+|++|+++.|.+ ...|..+..++.|+.|++.+|+++-+.+|.. ++.+-+|+.+.
T Consensus 250 LNLS~N~----iteL~~~~~~W-~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~ 322 (1255)
T KOG0444|consen 250 LNLSGNK----ITELNMTEGEW-ENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFH 322 (1255)
T ss_pred eccCcCc----eeeeeccHHHH-hhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHH
Confidence 7777622 55555544444 7889999999986 5678889999999999999999988777776 99999999999
Q ss_pred ecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 292 LKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 292 l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
.++ +.++-+|..+..|+.|+.|.++.|..+ .+|++|.-++.|+.|++..+|
T Consensus 323 aan-N~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 323 AAN-NKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhc-cccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 998 679999999999999999999999854 699999999999999999987
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=9.7e-25 Score=200.41 Aligned_cols=280 Identities=22% Similarity=0.210 Sum_probs=222.1
Q ss_pred chhhhhhHHHhccCCeeeEEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccH
Q 044637 52 HLALIQCENFCKKFKHLRVLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPE 129 (370)
Q Consensus 52 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~ 129 (370)
|.....+..-++.++.||.+++..|++. .+|+.+-.+..|..|||+.|++.+.|..+.+-+++-+|++++|.+..+|.
T Consensus 64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPN 143 (1255)
T ss_pred hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCc
Confidence 3344444555678888999999999877 88999999999999999999999999999999999999999999999984
Q ss_pred -HHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhcc
Q 044637 130 -DIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQL 206 (370)
Q Consensus 130 -~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 206 (370)
.+.+|.-|-.||++ ++....+|..+.++..|++|.++++. .-....+..+++|+.|++++.. .....+|.++..+
T Consensus 144 ~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDL 221 (1255)
T ss_pred hHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhh
Confidence 45688899999999 88888899999999999999987776 2233445667888888888875 4567888899999
Q ss_pred CCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCcc
Q 044637 207 HKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQ 286 (370)
Q Consensus 207 ~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 286 (370)
.+|..++++..+ |..+.=.+..+ ++|+.|++++|.++. .-...+...+|+.|+++.|+++. +|.. +..+++
T Consensus 222 ~NL~dvDlS~N~----Lp~vPecly~l-~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~--LP~a-vcKL~k 292 (1255)
T KOG0444|consen 222 HNLRDVDLSENN----LPIVPECLYKL-RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTV--LPDA-VCKLTK 292 (1255)
T ss_pred hhhhhccccccC----CCcchHHHhhh-hhhheeccCcCceee-eeccHHHHhhhhhhccccchhcc--chHH-HhhhHH
Confidence 999988888622 22221144556 888999999988744 23345667889999999888864 4555 778889
Q ss_pred ccEEEecCCCCCc--eeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 287 LKILHLKSMLWLE--EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 287 L~~L~l~~~~~l~--~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
|+.|.+.+ +++. .||..++.+.+|+.+...+|. +.-+|+++..|+.|+.|.+..+.
T Consensus 293 L~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 293 LTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred HHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc
Confidence 99998887 4554 889899999999999988876 77889999999999999998774
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=3.9e-22 Score=198.86 Aligned_cols=160 Identities=21% Similarity=0.152 Sum_probs=78.9
Q ss_pred CCEeEEecChhhhHHHHHHhcC-cE-----EEeCCCCCcc-----ccCCcccccccchhhhhhHHHhccCCeeeEEEcCC
Q 044637 7 GTIKACYVPSLEFTSLALMAEK-TI-----FVWNPGMEEE-----SLSNVKRSKTDHLALIQCENFCKKFKHLRVLNLGS 75 (370)
Q Consensus 7 ~~v~~~~mHdli~~d~a~~i~~-~~-----~~~~~~~~~~-----~~~~~~r~ls~~~~~~~~~~~~~~~~~L~~L~L~~ 75 (370)
|+.++|+|||+| ||||+|+|. +. .++..+.+.. ..+..+|+++.+........--..++.|++|-+.+
T Consensus 476 ~~~~~~kmHDvv-Re~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 476 GRKETVKMHDVV-REMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred cceeEEEeeHHH-HHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 678999999999 999999992 11 3333321111 12345677762221111000012233455555555
Q ss_pred CC--cccC-CcccCCcCCCcEEeeCCCC-CcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcC-CCC
Q 044637 76 AV--LDQY-PPGLENFFYLKYLKLNIPS-LKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITL-PAP 150 (370)
Q Consensus 76 ~~--~~~~-~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~-~~~ 150 (370)
+. +..+ +..|..++.|++||+++|. +..+|+.++.|.+||+|+++++.+..+|.++++|.+|.+|++. .+. ...
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~-~~~~l~~ 633 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE-VTGRLES 633 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc-ccccccc
Confidence 43 2222 2234445555555555433 3355555555555555555555555555555555555555555 332 222
Q ss_pred CCCCCCCCCCCceecccc
Q 044637 151 PKNNSSTLKNLIFISALH 168 (370)
Q Consensus 151 ~~~~l~~l~~L~~L~l~~ 168 (370)
+|.....+.+|++|.+..
T Consensus 634 ~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccchhhhcccccEEEeec
Confidence 333333455555555443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.3e-23 Score=187.53 Aligned_cols=279 Identities=19% Similarity=0.226 Sum_probs=195.2
Q ss_pred HHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCcccc-HHHhcccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSP-EDIWMMLK 136 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 136 (370)
..+|.++++|+.+.+.+|.++.+|.......+|+.|+|.+|.|+++ .+++..++.||.||++.|.+..+| ..+..-.+
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 4567899999999999999999998888888999999999999866 467888999999999999887776 34555678
Q ss_pred CcEEEccCCcCCCCCC-CCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEE
Q 044637 137 LMHLNFGSITLPAPPK-NNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK 213 (370)
Q Consensus 137 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 213 (370)
+++|+++ ++....+. ..+.++.+|..|.+..+. ..+| ..++++++|+.|++..+. ....--..+..+++|+.|.
T Consensus 175 i~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 175 IKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--IRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred ceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc--eeeehhhhhcCchhhhhhh
Confidence 9999999 66644443 457778889999987777 4444 456679999999998885 3333245666777777776
Q ss_pred Eec------CCCcc----ccceEEE-----------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeeccccc
Q 044637 214 LVN------EGNMR----QLSRMIL-----------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYL 272 (370)
Q Consensus 214 l~~------~~~~~----~L~~L~l-----------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 272 (370)
+.. .+..| +++++++ |+..+ ..|+.|+++.|.+....+.....+++|+.|+|++|+++
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 664 22222 5666666 55556 66666666666555544555555566666666655554
Q ss_pred Ccee-----------------------EEecCCCCccccEEEecCCCCCc-eeE---eCCCCCCCcceEeecCCcccCCC
Q 044637 273 ERKL-----------------------VCVGCSSFPQLKILHLKSMLWLE-EWT---MGAGAMPKLESLILNPCAYLRKL 325 (370)
Q Consensus 273 ~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~-~i~---~~~~~l~~L~~L~l~~c~~l~~l 325 (370)
.-.. ... +.++++|+.|+|+++ .+. .+. ..+..+++|+.|.+.+|. ++++
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I 407 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGA-FVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSI 407 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhH-HHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCce-eeec
Confidence 3110 111 344567777777763 343 221 224568899999999887 7777
Q ss_pred ch-hcccCCCCcEEEecCCC
Q 044637 326 PE-ELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 326 ~~-~~~~l~~L~~L~l~~~~ 344 (370)
|. .+..+.+|++|++.+++
T Consensus 408 ~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccCcccceecCCCCc
Confidence 74 67788899999999887
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=6.7e-24 Score=185.44 Aligned_cols=285 Identities=22% Similarity=0.248 Sum_probs=187.4
Q ss_pred cchhhhhhHHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHH
Q 044637 51 DHLALIQCENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPED 130 (370)
Q Consensus 51 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~ 130 (370)
.|-...+++..+.....++.++.+++.+..+|++++.+..|..++..+|++.++|+.++.+.+|..+++.++++..+|+.
T Consensus 99 s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~ 178 (565)
T KOG0472|consen 99 SHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN 178 (565)
T ss_pred ccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH
Confidence 34445566666777788888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccC------------------------CCCCccE
Q 044637 131 IWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILG------------------------RLPNVQT 185 (370)
Q Consensus 131 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~------------------------~l~~L~~ 185 (370)
.-+++.|++||.. .+..+.+|..++.+.+|+-|++.++. ..+| +|+ ++++|..
T Consensus 179 ~i~m~~L~~ld~~-~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 179 HIAMKRLKHLDCN-SNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHHHHhcccc-hhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 7778888888887 66778888888888888888766665 3333 344 4445555
Q ss_pred EEEecccccchhcHHHhhhccCCCCEEEEecCC-Ccc-------ccceEEE-----------------------------
Q 044637 186 LRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG-NMR-------QLSRMIL----------------------------- 228 (370)
Q Consensus 186 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-------~L~~L~l----------------------------- 228 (370)
|++..+ ...+.|..++-+.+|++|++++.+ ..+ +++.|.+
T Consensus 257 LDLRdN---klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 257 LDLRDN---KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred eecccc---ccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 555555 566677777777777777777611 111 1111111
Q ss_pred ---------------------------------------ecCCCC---------CCceEEEEeccCC-------------
Q 044637 229 ---------------------------------------SEYKFP---------PSLTQLSLSNTEL------------- 247 (370)
Q Consensus 229 ---------------------------------------~~~~~p---------~~L~~L~l~~~~~------------- 247 (370)
.+...| .-....+++.|.+
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel 413 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL 413 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH
Confidence 000000 0012222222221
Q ss_pred ----------CCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCC----------------------
Q 044637 248 ----------MEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSM---------------------- 295 (370)
Q Consensus 248 ----------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------------- 295 (370)
.+.++..+..+++|..|++++|-+.+ +|.. .+.+..|+.|+++.+
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e-~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEE-MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchh-hhhhhhhheecccccccccchHHHhhHHHHHHHHhcc
Confidence 13344445556666666666544432 2333 445555666666652
Q ss_pred CCCceeEeC-CCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 296 LWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 296 ~~l~~i~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+.+.++++. ++.|.+|..|++.+|. +..+|..++++++|++|+++|+|
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 233334433 5678899999999988 77899999999999999999998
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=3e-22 Score=182.72 Aligned_cols=283 Identities=19% Similarity=0.170 Sum_probs=181.4
Q ss_pred HHHhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHHHh-ccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPEDIW-MML 135 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~i~-~l~ 135 (370)
.+.++-++.||+|||+.|.|+.+| +.+..-.++++|+|++|.|+.+- ..|..+.+|-.|.++.|.+..+|.... +|+
T Consensus 142 se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP 221 (873)
T ss_pred HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcc
Confidence 445566778888888888877444 24555567888888888887653 356777788888888888888875544 488
Q ss_pred cCcEEEccCCcCCCCC-CCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEE
Q 044637 136 KLMHLNFGSITLPAPP-KNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECL 212 (370)
Q Consensus 136 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 212 (370)
+|+.|++. .+..... --.+.++++|+.|.+-.++ .--...+..+.++++|++..+. ...--.-++.+++.|+.|
T Consensus 222 ~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 222 KLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hhhhhhcc-ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhh
Confidence 88888887 5542222 1235667777777766665 1122234556677777777664 333333456666777777
Q ss_pred EEecCCCccccceEEE-ecCCCCCCceEEEEeccCCCCCCcc------------------------cccCCCCCCeEEee
Q 044637 213 KLVNEGNMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMP------------------------TLEELPHLEVLKLK 267 (370)
Q Consensus 213 ~l~~~~~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~------------------------~l~~l~~L~~L~l~ 267 (370)
+++... ++++.+ ....+ ++|+.|++++|.++...+. .+..+.+|+.|+|+
T Consensus 299 ~lS~Na----I~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 299 DLSYNA----IQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred ccchhh----hheeecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 766511 222222 22333 4455555555544333322 34456777777777
Q ss_pred cccccCceeEEe-cCCCCccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEec----
Q 044637 268 QNSYLERKLVCV-GCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELH---- 341 (370)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~---- 341 (370)
+|.+...+-... .+.++++|+.|.+.+ +.++.|+. ++..+++|+.|++.+|....--|..++.+ .|++|.+.
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 776643221111 156789999999999 67999984 67899999999999999666567788877 88888754
Q ss_pred --CCCHHHHHhh
Q 044637 342 --WPQPELRQRL 351 (370)
Q Consensus 342 --~~~~~l~~~~ 351 (370)
+|.-.|..+|
T Consensus 452 lCDCql~Wl~qW 463 (873)
T KOG4194|consen 452 LCDCQLKWLAQW 463 (873)
T ss_pred EEeccHHHHHHH
Confidence 4765555444
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.3e-19 Score=189.28 Aligned_cols=246 Identities=22% Similarity=0.255 Sum_probs=163.4
Q ss_pred cCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCC-CcccChhhhcCCCCcEEecCCC-cCccccHHHhccccCcEEE
Q 044637 64 KFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPS-LKCLPSLLCTLINLQTLEMPSS-YIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~ 141 (370)
.+.+|+.|+++++.+..+|.++..+++|++|+++++. +..+| .++.+++|++|++++| .+..+|..++++++|+.|+
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 3567888888888877777778888888888888764 55666 4777888888888887 6778888888888888888
Q ss_pred ccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccC-------------------CC-------------------
Q 044637 142 FGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILG-------------------RL------------------- 180 (370)
Q Consensus 142 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~-------------------~l------------------- 180 (370)
++ +|. ...+|..+ ++++|+.|++.+|. ..+|.... .+
T Consensus 688 L~-~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 688 MS-RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CC-CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 88 665 66677655 67777777766664 22222110 01
Q ss_pred ------------CCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCC
Q 044637 181 ------------PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELM 248 (370)
Q Consensus 181 ------------~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~ 248 (370)
++|+.|++++|. ....+|.+++++++|+.|++.++. +++.+.-. ..+ ++|++|++++|...
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~C~---~L~~LP~~-~~L-~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIP--SLVELPSSIQNLHKLEHLEIENCI---NLETLPTG-INL-ESLESLDLSGCSRL 838 (1153)
T ss_pred ccccchhhhhccccchheeCCCCC--CccccChhhhCCCCCCEEECCCCC---CcCeeCCC-CCc-cccCEEECCCCCcc
Confidence 233333333332 333445555555555555555421 12222111 134 66677777766433
Q ss_pred CCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCC
Q 044637 249 EDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKL 325 (370)
Q Consensus 249 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l 325 (370)
...|. ..++|+.|++++|.+.. ++.. +..+++|+.|++++|+.++.+|.....+++|+.+++.+|..+..+
T Consensus 839 ~~~p~---~~~nL~~L~Ls~n~i~~--iP~s-i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 839 RTFPD---ISTNISDLNLSRTGIEE--VPWW-IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccc---cccccCEeECCCCCCcc--ChHH-HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 33332 23567777777776653 3444 678999999999999999999998999999999999999877643
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.8e-22 Score=176.52 Aligned_cols=266 Identities=20% Similarity=0.188 Sum_probs=205.1
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
..-..+..+++++|.+..+-+.+.++..|.+|+++.+...++|.+++.+..++.++.+++++.++|+.++.+++|++++.
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 33456777888888887666677888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcc
Q 044637 143 GSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 143 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 221 (370)
+ .+....+|++++.+..++.++..+++ ...|..+..+.+|..+.+.++ ...++|+..-.++.|+.|+.....
T Consensus 122 s-~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N~--- 194 (565)
T KOG0472|consen 122 S-SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSNL--- 194 (565)
T ss_pred c-ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchhh---
Confidence 8 55567778888888888888866666 788888888888888888887 556666665568778777766511
Q ss_pred ccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCcee
Q 044637 222 QLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEW 301 (370)
Q Consensus 222 ~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 301 (370)
++.+.-.++.+ .+|.-|++..|++ ...| .+.+|..|++|+++.|.+.- ++..-...++++..|++.+ ++++++
T Consensus 195 -L~tlP~~lg~l-~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRd-Nklke~ 267 (565)
T KOG0472|consen 195 -LETLPPELGGL-ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRD-NKLKEV 267 (565)
T ss_pred -hhcCChhhcch-hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeeccc-cccccC
Confidence 22222245566 7778888888876 3344 77888889999998777632 2332144788899999998 679999
Q ss_pred EeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 302 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 302 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
|..+.-+.+|++|++++|. +..+|..++++ .|+.|.+.|+|
T Consensus 268 Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred chHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 9888889999999999887 66788888888 89999999988
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=5.5e-21 Score=182.81 Aligned_cols=104 Identities=25% Similarity=0.313 Sum_probs=65.3
Q ss_pred CCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceE
Q 044637 235 PSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESL 314 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L 314 (370)
+.|+.|.+.+|.+++...+.+.+++.|+.|+|++|.+.. ++...+..++.|++|.|++ ++++.+|.....++.|++|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHH
Confidence 456777777777777777777778888888888776643 2222256677777778877 5677776655555555555
Q ss_pred eecCCcccCCCchhcccCCCCcEEEecCC
Q 044637 315 ILNPCAYLRKLPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 315 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 343 (370)
...+|. +...| .+..+++|+.++++.+
T Consensus 436 ~ahsN~-l~~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 436 RAHSNQ-LLSFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred hhcCCc-eeech-hhhhcCcceEEecccc
Confidence 555544 23344 3444555555555554
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=5.8e-19 Score=137.76 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=146.1
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
..+.+++.|.|++|.++.+|+.+..+.+|++|++++|+++.+|.+++.+++|+.|+++-|.+..+|.+++.+|.|+.||+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcC-CCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCc
Q 044637 143 GSITL-PAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNM 220 (370)
Q Consensus 143 ~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 220 (370)
.|++. ...+|..+..++.|+.|++..++ ..+|..++++++||.|.+..+ ..-.+|..++.++.|+.|.+++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqgn--- 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQGN--- 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcccc---
Confidence 98887 66788888889999999988888 889999999999999999988 67788999999988888888761
Q ss_pred cccceEEEecCCCCCCceEEEEecc
Q 044637 221 RQLSRMILSEYKFPPSLTQLSLSNT 245 (370)
Q Consensus 221 ~~L~~L~l~~~~~p~~L~~L~l~~~ 245 (370)
-+.-+|+.|-.+++-++
T Consensus 184 --------rl~vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 184 --------RLTVLPPELANLDLVGN 200 (264)
T ss_pred --------eeeecChhhhhhhhhhh
Confidence 12234566666655544
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.3e-16 Score=155.48 Aligned_cols=244 Identities=19% Similarity=0.223 Sum_probs=180.9
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
.+...|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.+..+|..+. .+|+.|+++ +
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls-~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS-I 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc-C
Confidence 567899999999988887664 589999999999999998765 599999999998889987654 589999999 7
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccc
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLS 224 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~ 224 (370)
|....+|..+. ++|+.|++..+. ..+|..+. ++|+.|++++|. ...+|..+. ++|+.|+++++. +.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N~----Lt 317 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSNS----LT 317 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc---cccCcccch--hhHHHHHhcCCc----cc
Confidence 77667877654 589999987666 66666553 589999999984 334444332 356667666521 22
Q ss_pred eEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeC
Q 044637 225 RMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMG 304 (370)
Q Consensus 225 ~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 304 (370)
.+ ...+|++|+.|++++|.+.. .|..+ .++|+.|++++|.+.. ++.. + .++|+.|+|++| .+..+|..
T Consensus 318 ~L---P~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~-l--p~~L~~LdLs~N-~Lt~LP~~ 385 (754)
T PRK15370 318 AL---PETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPET-L--PPTITTLDVSRN-ALTNLPEN 385 (754)
T ss_pred cC---CccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChh-h--cCCcCEEECCCC-cCCCCCHh
Confidence 11 11234789999999998754 45444 3799999999998763 2322 2 368999999995 58888765
Q ss_pred CCCCCCcceEeecCCcccCCCchhc----ccCCCCcEEEecCCC
Q 044637 305 AGAMPKLESLILNPCAYLRKLPEEL----WCIKSLCKLELHWPQ 344 (370)
Q Consensus 305 ~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~~~ 344 (370)
+. ++|+.|++++|.. ..+|..+ ..++++..+++.+++
T Consensus 386 l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 LP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 43 4799999999874 4666644 345888999999998
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=8.8e-16 Score=150.78 Aligned_cols=238 Identities=22% Similarity=0.179 Sum_probs=137.8
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
..-.+|+++++.++.+|+.+. .+|+.|++.+|+++.+|.. .++|++|++++|.+..+|.. .++|+.|+++ +
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls-~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIF-S 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeecc-C
Confidence 345567777777766666554 3677777777777766632 45677777777766666532 3456666666 4
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEeccccc-----------------chhcHHHhhhccC
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSY-----------------YHSGVSKSLCQLH 207 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~-----------------~~~~~~~~l~~l~ 207 (370)
|....+|.. .++|+.|++.++. ..+|.. .++|+.|++++|.-. ....+|.. ..
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~ 342 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PS 342 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCcccccccc---cc
Confidence 443333331 1334445544444 333321 234555555554200 11122210 12
Q ss_pred CCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccc
Q 044637 208 KLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQL 287 (370)
Q Consensus 208 ~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 287 (370)
+|+.|+++++. ++ .+...|.+|+.|++++|.+.. +|.. .++|+.|++++|.+.+ ++. ..++|
T Consensus 343 ~Lq~LdLS~N~----Ls----~LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~--LP~----l~s~L 404 (788)
T PRK15387 343 GLQELSVSDNQ----LA----SLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS--LPV----LPSEL 404 (788)
T ss_pred ccceEecCCCc----cC----CCCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccC--CCC----cccCC
Confidence 44555554311 11 122233566677777666543 3322 3568888888887764 222 23578
Q ss_pred cEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 288 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 288 ~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+.|+++++ .++.+|.. ..+|+.|++++|. ++.+|..+.++++|+.|++.+|+
T Consensus 405 ~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 405 KELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CEEEccCC-cCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 89999984 57777742 4578889999887 56899989999999999999987
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=6.7e-18 Score=161.93 Aligned_cols=187 Identities=24% Similarity=0.228 Sum_probs=129.1
Q ss_pred CCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC------CCc
Q 044637 148 PAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE------GNM 220 (370)
Q Consensus 148 ~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~------~~~ 220 (370)
...+|.+++.|.+|+.++...+. ...|..+...++|+.|.+..| ..+.+|......+.|++|++... +..
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n---el~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN---ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh---hhhhCCCcccccceeeeeeehhccccccchHH
Confidence 44566666777777777755444 556666666666666666665 45555555555666666666540 000
Q ss_pred c-----------------------------ccceEEE-----------ecCCCCCCceEEEEeccCCCCCCcccccCCCC
Q 044637 221 R-----------------------------QLSRMIL-----------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPH 260 (370)
Q Consensus 221 ~-----------------------------~L~~L~l-----------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~ 260 (370)
+ .|+.|.+ .+..+ .+|+.|+++.|.+.......+.+++.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHH
Confidence 0 1222222 34467 89999999999876655566889999
Q ss_pred CCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccC-CCchhcccCCCCcEEE
Q 044637 261 LEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR-KLPEELWCIKSLCKLE 339 (370)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~ 339 (370)
|++|++++|.+.. ++.. +..++.|+.|...+ +.+..+| .+..++.|+.++++.|.... .+|..... ++|++|+
T Consensus 409 LeeL~LSGNkL~~--Lp~t-va~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd 482 (1081)
T KOG0618|consen 409 LEELNLSGNKLTT--LPDT-VANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD 482 (1081)
T ss_pred hHHHhcccchhhh--hhHH-HHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence 9999999999864 3444 67889999998887 5688888 78899999999999887443 34544332 7999999
Q ss_pred ecCCC
Q 044637 340 LHWPQ 344 (370)
Q Consensus 340 l~~~~ 344 (370)
++|+.
T Consensus 483 lSGN~ 487 (1081)
T KOG0618|consen 483 LSGNT 487 (1081)
T ss_pred ccCCc
Confidence 99987
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=4.7e-15 Score=146.38 Aligned_cols=224 Identities=20% Similarity=0.259 Sum_probs=167.9
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
+.++.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|+++ +
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls-~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF-H 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc-C
Confidence 579999999999998887664 599999999999999997664 489999999998889997764 589999999 7
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccc
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLS 224 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~ 224 (370)
+....+|..+. ++|+.|++.++. ..+|..+. ++|+.|++++|. ...+|..+ .++|+.|+++++. +.
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~---Lt~LP~~l--~~sL~~L~Ls~N~----Lt 338 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS---LTALPETL--PPGLKTLEAGENA----LT 338 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc---cccCCccc--cccceeccccCCc----cc
Confidence 77667887654 589999988877 66665443 478899999884 33455443 2578888887622 22
Q ss_pred eEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeC
Q 044637 225 RMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMG 304 (370)
Q Consensus 225 ~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 304 (370)
.+ ...+|++|+.|++++|.+. ..|..+ .++|+.|++++|.+.. ++.. -.++|+.|++++ +.+..+|..
T Consensus 339 ~L---P~~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~--LP~~---l~~sL~~LdLs~-N~L~~LP~s 406 (754)
T PRK15370 339 SL---PASLPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN--LPEN---LPAALQIMQASR-NNLVRLPES 406 (754)
T ss_pred cC---ChhhcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC--CCHh---HHHHHHHHhhcc-CCcccCchh
Confidence 21 1234479999999999875 345444 3789999999998764 2222 124799999999 467777654
Q ss_pred C----CCCCCcceEeecCCcc
Q 044637 305 A----GAMPKLESLILNPCAY 321 (370)
Q Consensus 305 ~----~~l~~L~~L~l~~c~~ 321 (370)
+ +.++++..|.+.+|+.
T Consensus 407 l~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCc
Confidence 3 4458899999999985
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=1.3e-14 Score=142.59 Aligned_cols=226 Identities=19% Similarity=0.117 Sum_probs=146.2
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHh-------------
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIW------------- 132 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~------------- 132 (370)
++|+.|++.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|.+..+|....
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence 3688888888888877753 46888888888888877743 2455556555554444432110
Q ss_pred ----ccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccC
Q 044637 133 ----MMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH 207 (370)
Q Consensus 133 ----~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 207 (370)
.+++|+.|+++ +|....+|.. ..+|+.|.+.++. ..+|.. ..+|+.|++++|. ...+|.. ..
T Consensus 296 ~LP~~p~~L~~LdLS-~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~---Ls~LP~l---p~ 362 (788)
T PRK15387 296 SLPVLPPGLQELSVS-DNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ---LASLPTL---PS 362 (788)
T ss_pred cccccccccceeECC-CCccccCCCC---cccccccccccCcccccccc---ccccceEecCCCc---cCCCCCC---Cc
Confidence 12456666666 4444444432 1235555544444 333321 2478999999884 4445542 24
Q ss_pred CCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccc
Q 044637 208 KLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQL 287 (370)
Q Consensus 208 ~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 287 (370)
+|+.|+++... +. .+...|.+|+.|++++|.+.. .|.. .++|+.|++++|.+.. ++. .+.+|
T Consensus 363 ~L~~L~Ls~N~----L~----~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss--IP~----l~~~L 424 (788)
T PRK15387 363 ELYKLWAYNNR----LT----SLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS--LPM----LPSGL 424 (788)
T ss_pred ccceehhhccc----cc----cCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC--CCc----chhhh
Confidence 56667666411 22 222334789999999998754 4432 4689999999998864 222 23578
Q ss_pred cEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhc
Q 044637 288 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEL 329 (370)
Q Consensus 288 ~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 329 (370)
+.|++++ +.++.+|..+..+++|+.|++++|+.....+..+
T Consensus 425 ~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 425 LSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999998 5689999989999999999999999776655544
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=3.9e-17 Score=127.63 Aligned_cols=152 Identities=22% Similarity=0.330 Sum_probs=136.2
Q ss_pred cchhhhhhHHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcC--cccc
Q 044637 51 DHLALIQCENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYI--DHSP 128 (370)
Q Consensus 51 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~--~~lp 128 (370)
.|......+.-+..+.+|++|++.+|.++.+|.+++.+++||.|+++-|.+..+|..|+.++-|+.||+++|.+ ..+|
T Consensus 41 SHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 41 SHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred ccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence 55555566677789999999999999999999999999999999999999999999999999999999999944 5799
Q ss_pred HHHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhcc
Q 044637 129 EDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQL 206 (370)
Q Consensus 129 ~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 206 (370)
..+..|..|+.|+++ ++...-+|..++++++|+.|.+..++ -+.|.+++.++.|++|+|.++ ....+|..++++
T Consensus 121 gnff~m~tlralyl~-dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn---rl~vlppel~~l 195 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLG-DNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN---RLTVLPPELANL 195 (264)
T ss_pred cchhHHHHHHHHHhc-CCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc---eeeecChhhhhh
Confidence 999999999999999 88888899999999999999988888 899999999999999999998 455666666655
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=1.1e-15 Score=138.87 Aligned_cols=265 Identities=21% Similarity=0.169 Sum_probs=131.2
Q ss_pred hhHHHhccCCeeeEEEcCCCCcc-----cCCcccCCcCCCcEEeeCCCCCcc-------cChhhhcCCCCcEEecCCCcC
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLD-----QYPPGLENFFYLKYLKLNIPSLKC-------LPSLLCTLINLQTLEMPSSYI 124 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-------lp~~~~~l~~L~~L~l~~~~~ 124 (370)
.+...+..+..|++|+++++.++ .++..+...+.|++++++++.+.. ++..+..+++|+.|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34556667777888888888874 355566667778888888776552 234566677888888888754
Q ss_pred c-cccHHHhcccc---CcEEEccCCcCCCCCCCCCCCCCCCceeccccCCCCCccccCCC-CCccEEEEecccccch---
Q 044637 125 D-HSPEDIWMMLK---LMHLNFGSITLPAPPKNNSSTLKNLIFISALHPGSCTPDILGRL-PNVQTLRISGDLSYYH--- 196 (370)
Q Consensus 125 ~-~lp~~i~~l~~---L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~--- 196 (370)
. ..+..+..+.+ |++|+++ +|....... ..+...+..+ ++|+.|++++|. ..
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~-----------------~~l~~~l~~~~~~L~~L~L~~n~--l~~~~ 153 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLN-NNGLGDRGL-----------------RLLAKGLKDLPPALEKLVLGRNR--LEGAS 153 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEee-CCccchHHH-----------------HHHHHHHHhCCCCceEEEcCCCc--CCchH
Confidence 3 34444555554 8888887 543211000 0011122333 455555555553 21
Q ss_pred -hcHHHhhhccCCCCEEEEecCCCc-cccceEEEecCCCCCCceEEEEeccCCCCCC----cccccCCCCCCeEEeeccc
Q 044637 197 -SGVSKSLCQLHKLECLKLVNEGNM-RQLSRMILSEYKFPPSLTQLSLSNTELMEDP----MPTLEELPHLEVLKLKQNS 270 (370)
Q Consensus 197 -~~~~~~l~~l~~L~~L~l~~~~~~-~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~ 270 (370)
..+...+..+++|+.|++++..-. -.+..+.-.+..+ ++|++|++++|.+.+.. ...+..+++|++|++++|.
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 122333333344444444331000 0000000011122 45666666666543322 2233455666666666665
Q ss_pred ccCceeEEecCC----CCccccEEEecCCCCCc-----eeEeCCCCCCCcceEeecCCcccCC----CchhcccC-CCCc
Q 044637 271 YLERKLVCVGCS----SFPQLKILHLKSMLWLE-----EWTMGAGAMPKLESLILNPCAYLRK----LPEELWCI-KSLC 336 (370)
Q Consensus 271 ~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~-----~i~~~~~~l~~L~~L~l~~c~~l~~----l~~~~~~l-~~L~ 336 (370)
+.+...... .. ..+.|++|++++|. ++ .+......+++|+.+++++|...+. +...+... +.|+
T Consensus 233 l~~~~~~~l-~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 233 LTDAGAAAL-ASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CchHHHHHH-HHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 543211110 01 13566666666653 32 2222334446666666666664432 33333333 5566
Q ss_pred EEEecCCC
Q 044637 337 KLELHWPQ 344 (370)
Q Consensus 337 ~L~l~~~~ 344 (370)
++++.++|
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 66665543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=6.8e-16 Score=135.40 Aligned_cols=266 Identities=18% Similarity=0.161 Sum_probs=148.3
Q ss_pred eeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCC-CcCccccH-HHhccccCcEEEc
Q 044637 67 HLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPS-SYIDHSPE-DIWMMLKLMHLNF 142 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~-~~~~~lp~-~i~~l~~L~~L~l 142 (370)
.-..++|..|.|+.+|+ .|+.+++||.|||+.|+|+.+ |..|..+..|-.|-+.+ |++..+|. .++.|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45567888888887664 577888999999999988855 77888888888877776 58888884 4678888888888
Q ss_pred cCCcC-CCCCCCCCCCCCCCceeccccCC-CCCcc-ccCCCCCccEEEEecccccchhcHHHhhhccCCCCEE------E
Q 044637 143 GSITL-PAPPKNNSSTLKNLIFISALHPG-SCTPD-ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECL------K 213 (370)
Q Consensus 143 ~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L------~ 213 (370)
. .+. .......+..++++..|.+..+. +.++. .+..+.+++.+++..+. +. ..++++.+... .
T Consensus 148 N-an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np--~i-----cdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 148 N-ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP--FI-----CDCNLPWLADDLAMNPIE 219 (498)
T ss_pred C-hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc--cc-----cccccchhhhHHhhchhh
Confidence 7 655 34444566777888888776666 44444 56667777777776654 11 11111111110 0
Q ss_pred Eec-CC-CccccceEEE---ecCCCCCCceEE--E-EeccCCCCCCc-ccccCCCCCCeEEeecccccCceeEEecCCCC
Q 044637 214 LVN-EG-NMRQLSRMIL---SEYKFPPSLTQL--S-LSNTELMEDPM-PTLEELPHLEVLKLKQNSYLERKLVCVGCSSF 284 (370)
Q Consensus 214 l~~-~~-~~~~L~~L~l---~~~~~p~~L~~L--~-l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (370)
.++ .. ....+....+ .-..+-.+++.+ . .+.|......| ..+..+|+|+.|++++|++++.. ... +.+.
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~a-Fe~~ 297 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGA-FEGA 297 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhh-hcch
Confidence 011 00 0000000000 000000111111 0 11121112222 22556666666666666665433 222 4555
Q ss_pred ccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCC
Q 044637 285 PQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 285 ~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 343 (370)
..++.|.|.. +.++.+.. .+..+..|+.|++++|.....-|..+..+.+|.+|++-.+
T Consensus 298 a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 298 AELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 6666666666 34554432 3455666666666666655555556666666666666554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=1.2e-14 Score=132.20 Aligned_cols=250 Identities=22% Similarity=0.176 Sum_probs=157.1
Q ss_pred EEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcCcc-------ccHHHhccc
Q 044637 70 VLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYIDH-------SPEDIWMML 135 (370)
Q Consensus 70 ~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~-------lp~~i~~l~ 135 (370)
.|+|..+.++ ..+..+..+.+|++|+++++.++ .++..+...++|++++++++.+.. ++..+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666655 44444556677888888888774 355566677778888887774432 233455666
Q ss_pred cCcEEEccCCcCCCCCCCCCCCCCCCceeccccCCCCCccccCCC---CCccEEEEeccc--ccchhcHHHhhhcc-CCC
Q 044637 136 KLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPGSCTPDILGRL---PNVQTLRISGDL--SYYHSGVSKSLCQL-HKL 209 (370)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l---~~L~~L~l~~~~--~~~~~~~~~~l~~l-~~L 209 (370)
+|++|+++ ++.... ..+..+..+ ++|+.|+++++. ......+...+..+ ++|
T Consensus 82 ~L~~L~l~-~~~~~~---------------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L 139 (319)
T cd00116 82 GLQELDLS-DNALGP---------------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139 (319)
T ss_pred ceeEEEcc-CCCCCh---------------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence 77777777 443211 111112222 558999998885 01123445566777 899
Q ss_pred CEEEEecCCCc-cccceEEEecCCCCCCceEEEEeccCCCCCCc----ccccCCCCCCeEEeecccccCce---eEEecC
Q 044637 210 ECLKLVNEGNM-RQLSRMILSEYKFPPSLTQLSLSNTELMEDPM----PTLEELPHLEVLKLKQNSYLERK---LVCVGC 281 (370)
Q Consensus 210 ~~L~l~~~~~~-~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~ 281 (370)
+.|++.++.-. -.+..+.-.+..+ ++|++|++++|.+.+... ..+...++|++|++++|.+.+.. +... +
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-~ 217 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRAN-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-L 217 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhC-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-h
Confidence 99999872100 0000000033455 789999999998765332 33456689999999999876432 1122 4
Q ss_pred CCCccccEEEecCCCCCceeE-eCC-----CCCCCcceEeecCCcccC----CCchhcccCCCCcEEEecCCC
Q 044637 282 SSFPQLKILHLKSMLWLEEWT-MGA-----GAMPKLESLILNPCAYLR----KLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~i~-~~~-----~~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~~~ 344 (370)
..+++|++|++++|+ +.... ..+ ...+.|+.|++.+|.... .+...+..+++|+.+++.+|.
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 568899999999964 54211 111 135899999999998652 345566677899999999987
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=4.9e-12 Score=127.14 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=117.9
Q ss_pred cCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCC--CcccChh-hhcCCCCcEEecCCC-cCccccHHHhccccCcE
Q 044637 64 KFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPS--LKCLPSL-LCTLINLQTLEMPSS-YIDHSPEDIWMMLKLMH 139 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~ 139 (370)
.....|...+-++.+...+... .++.|+.|-+.++. +..++.. |..++.|++||+++| .+.++|..++.|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3456788888888776555443 34589999998886 5566543 778999999999999 88999999999999999
Q ss_pred EEccCCcCCCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec
Q 044637 140 LNFGSITLPAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN 216 (370)
Q Consensus 140 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 216 (370)
|+++ .+....+|.+++++..|.+|++.... ...+..+..+++||.|.+..............+..+.+|+.+.+..
T Consensus 600 L~L~-~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLS-DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccc-CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999 88888999999999999999988777 4455666669999999998764223344455667777777777655
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=8.6e-13 Score=116.17 Aligned_cols=252 Identities=19% Similarity=0.153 Sum_probs=165.7
Q ss_pred hHHHhccCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCC-CCCcccCh-hhhcCCCCcEEecCCCcCcccc-HHHhc
Q 044637 58 CENFCKKFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNI-PSLKCLPS-LLCTLINLQTLEMPSSYIDHSP-EDIWM 133 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~ 133 (370)
-+..|+.+++||.|||++|.|+ --|+.|..++.|..|-+.+ |+|+.+|+ .|++|..|+.|.+.-|++.-++ ..+..
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 3678999999999999999999 5577889999888887776 88999986 5889999999999888766555 56788
Q ss_pred cccCcEEEccCCcCCCCCCC-CCCCCCCCceeccccCC---CC-----------CccccCCCCCccEEEEecccccchhc
Q 044637 134 MLKLMHLNFGSITLPAPPKN-NSSTLKNLIFISALHPG---SC-----------TPDILGRLPNVQTLRISGDLSYYHSG 198 (370)
Q Consensus 134 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~---~~-----------~~~~l~~l~~L~~L~l~~~~~~~~~~ 198 (370)
|++|..|.+. ++....++. .+..+.+++.+.+..+. .. .+.+++...-.....+.+.. ...
T Consensus 163 L~~l~lLsly-Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R---i~q 238 (498)
T KOG4237|consen 163 LPSLSLLSLY-DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR---INQ 238 (498)
T ss_pred hhhcchhccc-chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH---hcc
Confidence 9999999999 776555655 56667777777644333 00 01111111111111111110 000
Q ss_pred HHH--hhhccCCCCE-EEEec-CCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCc
Q 044637 199 VSK--SLCQLHKLEC-LKLVN-EGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLER 274 (370)
Q Consensus 199 ~~~--~l~~l~~L~~-L~l~~-~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 274 (370)
+.+ ..+.+..+.+ +.-.. .+...-.+ .+..+ ++|++|++++|+++.....++.....++.|.+..|++...
T Consensus 239 ~~a~kf~c~~esl~s~~~~~d~~d~~cP~~----cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v 313 (498)
T KOG4237|consen 239 EDARKFLCSLESLPSRLSSEDFPDSICPAK----CFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV 313 (498)
T ss_pred cchhhhhhhHHhHHHhhccccCcCCcChHH----HHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH
Confidence 100 0001111100 00000 00000000 34567 9999999999999888888899999999999999987543
Q ss_pred eeEEecCCCCccccEEEecCCCCCceeE-eCCCCCCCcceEeecCCcc
Q 044637 275 KLVCVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAY 321 (370)
Q Consensus 275 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~l~~L~~L~l~~c~~ 321 (370)
. ... +.++..|+.|+|.+ +.++.+. ..+..+.+|.+|++-.|+.
T Consensus 314 ~-~~~-f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 314 S-SGM-FQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred H-HHh-hhccccceeeeecC-CeeEEEecccccccceeeeeehccCcc
Confidence 2 222 67788999999999 5677664 4677888899999988875
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.6e-12 Score=117.21 Aligned_cols=193 Identities=19% Similarity=0.289 Sum_probs=132.2
Q ss_pred CCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccC
Q 044637 65 FKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 144 (370)
+..-...|++.|.+..+|..++.|..|..+.++.|.+..+|..++.+..|.+||++.|.+..+|..+..|+ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s- 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS- 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe-
Confidence 34445567777777777777777777777777777777777777777777777777777777777776666 7777777
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcccc
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQL 223 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 223 (370)
|+....+|..++....|..|+.+.|+ ...|..++.+.+|+.|.+..+ ....+|+.++.+ .|.+|+++.. ++
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScN----ki 223 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCN----KI 223 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccC----ce
Confidence 77777777777777777777755555 777777777777777777776 566777777644 3666666652 25
Q ss_pred ceEEEecCCCCCCceEEEEeccCCCCCCcccc---cCCCCCCeEEeecc
Q 044637 224 SRMILSEYKFPPSLTQLSLSNTELMEDPMPTL---EELPHLEVLKLKQN 269 (370)
Q Consensus 224 ~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~ 269 (370)
.++.+.+.++ ..|++|-|.+|.+.. .|..+ |...-.++|+...|
T Consensus 224 s~iPv~fr~m-~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPVDFRKM-RHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecchhhhhh-hhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 5555566677 777777777777643 22222 34444555665544
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-11 Score=109.56 Aligned_cols=232 Identities=19% Similarity=0.137 Sum_probs=146.5
Q ss_pred CCcCCCcEEeeCCCCCcccCh--hhhcCCCCcEEecCCCcC---ccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCC
Q 044637 86 ENFFYLKYLKLNIPSLKCLPS--LLCTLINLQTLEMPSSYI---DHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKN 160 (370)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~---~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 160 (370)
+++.+|+...|.++.+...+. -...|++++.||+++|-+ ..+-.-+..||+|+.|+++ .+..... ++ +
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~---~~---s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNF---IS---S 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCC---cc---c
Confidence 356777777888777775553 456678888888888733 2333445677888888887 4431111 00 0
Q ss_pred CceeccccCCCCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEE
Q 044637 161 LIFISALHPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQL 240 (370)
Q Consensus 161 L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L 240 (370)
.. -..+++|+.|.++.|+ .....+...+..+|+|+.|+++.....+ .+.. ...-+ ..|+.|
T Consensus 191 ~~--------------~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~--~~~i~-~~L~~L 251 (505)
T KOG3207|consen 191 NT--------------TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIIL-IKAT--STKIL-QTLQEL 251 (505)
T ss_pred cc--------------hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccc-eecc--hhhhh-hHHhhc
Confidence 00 0135567778888776 2234555566677888888877621110 0000 11223 789999
Q ss_pred EEeccCCCC-CCcccccCCCCCCeEEeecccccCceeEEec----CCCCccccEEEecCCCCCceeEe--CCCCCCCcce
Q 044637 241 SLSNTELME-DPMPTLEELPHLEVLKLKQNSYLERKLVCVG----CSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLES 313 (370)
Q Consensus 241 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~i~~--~~~~l~~L~~ 313 (370)
+|++|.+.. +.....+.+|.|..|+++.+.+.+...+..+ ...|++|++|.+.. +.+.+|+. .+..+++|+.
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhh
Confidence 999997644 3345678999999999998888764433321 25689999999999 45777764 4567889999
Q ss_pred EeecCCcccCCC----chhcccCCCCcEEEecCCC
Q 044637 314 LILNPCAYLRKL----PEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 314 L~l~~c~~l~~l----~~~~~~l~~L~~L~l~~~~ 344 (370)
|.+..++..+.- -..+...++|..|+=.+|.
T Consensus 331 l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 331 LRITLNYLNKETDTAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred hhcccccccccccceeEEeeeehhhhhhhcccccC
Confidence 998888754411 1234556677766666654
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.06 E-value=4.7e-12 Score=112.35 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=87.3
Q ss_pred CCCCCceEEEEeccC-CCCCCccccc-CCCCCCeEEeecccccCce-eEEecCCCCccccEEEecCCCCCcee-----Ee
Q 044637 232 KFPPSLTQLSLSNTE-LMEDPMPTLE-ELPHLEVLKLKQNSYLERK-LVCVGCSSFPQLKILHLKSMLWLEEW-----TM 303 (370)
Q Consensus 232 ~~p~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~i-----~~ 303 (370)
+. .+|+.+-+.+|+ +++.....++ +++.|+.+++..+....+. +... ..+++.|+.|.+++|..++.- ..
T Consensus 318 ~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 318 HC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred CC-CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 56 788888888884 4444455554 6788998888877654332 2222 567899999999999777643 23
Q ss_pred CCCCCCCcceEeecCCcccC-CCchhcccCCCCcEEEecCCCHHHHHhhcc
Q 044637 304 GAGAMPKLESLILNPCAYLR-KLPEELWCIKSLCKLELHWPQPELRQRLRA 353 (370)
Q Consensus 304 ~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~~~l~~~~~~ 353 (370)
.-.++..|+.+++++|+.+. ..-+.+..+++|+.+++.+|.+-.++.++.
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 34578889999999999765 345667789999999999998666666655
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=3.4e-10 Score=106.09 Aligned_cols=174 Identities=23% Similarity=0.244 Sum_probs=85.3
Q ss_pred CeeeEEEcCCCCcccCCcccCCcC-CCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFF-YLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 144 (370)
+.++.|++.++.++.+++....+. +|+.|+++++.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls- 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS- 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc-
Confidence 445555555555555544444442 555555555555555444555555555555555555555444445555555555
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcccc
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQL 223 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 223 (370)
++....+|..+.....|+++.+..+. ...+..+..+.++..+.+..+. ...++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~---------------------- 249 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPE---------------------- 249 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccc----------------------
Confidence 44444444433333344444433332 3333333344444444333331 111111
Q ss_pred ceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccC
Q 044637 224 SRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLE 273 (370)
Q Consensus 224 ~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 273 (370)
.++.+ +.+++|++++|.+..... ++.+.+++.|+++++.+..
T Consensus 250 -----~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 -----SIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred -----hhccc-cccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 33444 667777777776533222 6677777777777666543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=8.7e-10 Score=89.65 Aligned_cols=130 Identities=22% Similarity=0.212 Sum_probs=46.6
Q ss_pred cCCeeeEEEcCCCCcccCCcccC-CcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHH-hccccCcEEE
Q 044637 64 KFKHLRVLNLGSAVLDQYPPGLE-NFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDI-WMMLKLMHLN 141 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~ 141 (370)
+...++.|+|+++.|+.+. .++ .+.+|+.|++++|.++.+. .+..+++|++|++++|.+..+...+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4456788999999887543 355 5788999999999988876 5777899999999999888886655 3688999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEecccc-cchhcHHHhhhccCCCCEEEEec
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLS-YYHSGVSKSLCQLHKLECLKLVN 216 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~L~~L~l~~ 216 (370)
++ ++....+. .+ ..+..+++|+.|++.+|+- .....-...+..+|+|+.||-..
T Consensus 95 L~-~N~I~~l~-------~l-------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LS-NNKISDLN-------EL-------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -T-TS---SCC-------CC-------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred Cc-CCcCCChH-------Hh-------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 98 65432221 11 1244567777777777751 11122334556677777776543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=3.4e-11 Score=110.87 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=114.0
Q ss_pred hhHHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhcccc
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLK 136 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 136 (370)
.++.-+..|..|..+.|..|.+..+|..++.+..|.||+|+.|++..+|..++.|+ |+.|-+++|++..+|..++.++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchh
Confidence 34444566667777777777777777777778888888888888777777776654 77777777777777777777777
Q ss_pred CcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEe
Q 044637 137 LMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 215 (370)
Q Consensus 137 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 215 (370)
|.+||.+ .|....+|..++.+.+|+.|++..+. ..+|+++..+ .|..|+++.| ....+|..+.+|++|+.|-+.
T Consensus 168 l~~ld~s-~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN---kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 168 LAHLDVS-KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN---KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HHHhhhh-hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC---ceeecchhhhhhhhheeeeec
Confidence 8888877 66666777777777778777766666 7777777744 3677777777 677777778888888887777
Q ss_pred c
Q 044637 216 N 216 (370)
Q Consensus 216 ~ 216 (370)
+
T Consensus 243 n 243 (722)
T KOG0532|consen 243 N 243 (722)
T ss_pred c
Confidence 5
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.3e-12 Score=106.27 Aligned_cols=182 Identities=19% Similarity=0.165 Sum_probs=113.3
Q ss_pred cCcEEEccCCcC--CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCE
Q 044637 136 KLMHLNFGSITL--PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC 211 (370)
Q Consensus 136 ~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 211 (370)
.|++||++ +.. ...+...+..|.+|+.|.+.+.. ..+...+.+-.+|+.++++++...........+.+|+.|..
T Consensus 186 Rlq~lDLS-~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLS-NSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcc-hhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46777777 433 12223345567777777766665 55556677777888888888763333344455677888888
Q ss_pred EEEecCCCcc-ccceEEEecCCCCCCceEEEEeccC--CCCCCccc-ccCCCCCCeEEeecccccCceeEEecCCCCccc
Q 044637 212 LKLVNEGNMR-QLSRMILSEYKFPPSLTQLSLSNTE--LMEDPMPT-LEELPHLEVLKLKQNSYLERKLVCVGCSSFPQL 287 (370)
Q Consensus 212 L~l~~~~~~~-~L~~L~l~~~~~p~~L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 287 (370)
|+++|++..- .++. .+.+..++|+.|+++++. +....... ...+|+|.+|+++.|.......... +..|+.|
T Consensus 265 LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYL 340 (419)
T ss_pred cCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchh
Confidence 8888733111 0010 222333778888888872 33333333 3578999999998765543332222 5678889
Q ss_pred cEEEecCCCCCc-eeEeCCCCCCCcceEeecCCccc
Q 044637 288 KILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYL 322 (370)
Q Consensus 288 ~~L~l~~~~~l~-~i~~~~~~l~~L~~L~l~~c~~l 322 (370)
++|.++.|..+. +--..+...|+|.+|++.+|..-
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 999998887654 22234678888888888888643
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.3e-11 Score=104.81 Aligned_cols=201 Identities=16% Similarity=0.152 Sum_probs=127.7
Q ss_pred ccCCeeeEEEcCCCCcccCC--cccCCcCCCcEEeeCCCCCc---ccChhhhcCCCCcEEecCCCcCccccHH--Hhccc
Q 044637 63 KKFKHLRVLNLGSAVLDQYP--PGLENFFYLKYLKLNIPSLK---CLPSLLCTLINLQTLEMPSSYIDHSPED--IWMML 135 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~ 135 (370)
++++.|+...|.++.+...+ .....|++++.|||++|-+. .+......|++|+.|+++.|++...... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 56788999999999877444 35677999999999998766 3445567899999999999955432211 23578
Q ss_pred cCcEEEccCCcC-CC-CCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHH--HhhhccCCC
Q 044637 136 KLMHLNFGSITL-PA-PPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVS--KSLCQLHKL 209 (370)
Q Consensus 136 ~L~~L~l~~~~~-~~-~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~l~~l~~L 209 (370)
.|+.|.++ .|. .+ .+...+..+++|+.|++..+. ........-+..|+.|+++++. ...++ ..++.++.|
T Consensus 198 ~lK~L~l~-~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~---li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLN-SCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN---LIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEec-cCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc---ccccccccccccccch
Confidence 89999999 775 22 222334568889999888774 2222223345678888888884 22232 456667777
Q ss_pred CEEEEecCCCccccceEEE-------ecCCCCCCceEEEEeccCCCCC-CcccccCCCCCCeEEeeccccc
Q 044637 210 ECLKLVNEGNMRQLSRMIL-------SEYKFPPSLTQLSLSNTELMED-PMPTLEELPHLEVLKLKQNSYL 272 (370)
Q Consensus 210 ~~L~l~~~~~~~~L~~L~l-------~~~~~p~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 272 (370)
+.|+++.++ +.++.+ -...+ ++|++|.+..|++.+. ....+..+++|+.|.+..+.+.
T Consensus 274 ~~Lnls~tg----i~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTG----IASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccC----cchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 777776533 222211 11245 6777777777765331 1223445666666666555443
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=3e-10 Score=98.94 Aligned_cols=251 Identities=17% Similarity=0.164 Sum_probs=156.0
Q ss_pred hHHHhccCCeeeEEEcCCCCcc-----cCCcccCCcCCCcEEeeCCCC----CcccChh-------hhcCCCCcEEecCC
Q 044637 58 CENFCKKFKHLRVLNLGSAVLD-----QYPPGLENFFYLKYLKLNIPS----LKCLPSL-------LCTLINLQTLEMPS 121 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~----~~~lp~~-------~~~l~~L~~L~l~~ 121 (370)
.......+..++.++|++|.|. .+.+.+.+.+.|+.-+++.-- ...+|+. +..+++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3455678889999999999876 455667777889998888632 1245543 34677999999999
Q ss_pred CcCc--c---ccHHHhccccCcEEEccCCcCCCCCCC-CCCCCCCCceeccccCCCCCccccCCCCCccEEEEeccc--c
Q 044637 122 SYID--H---SPEDIWMMLKLMHLNFGSITLPAPPKN-NSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDL--S 193 (370)
Q Consensus 122 ~~~~--~---lp~~i~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~ 193 (370)
|.+. . +-.-+..+..|++|++. ||..+..-. .+++ .|..|. ...-.+.-++|+++...+|. .
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~--al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGR--ALFELA-------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHH--HHHHHH-------HHhccCCCcceEEEEeecccccc
Confidence 9332 2 22346678889999998 876432211 1111 122221 11223445677788777775 2
Q ss_pred cchhcHHHhhhccCCCCEEEEecCCCcc-ccceEEEecCCCCCCceEEEEeccCCCCCC----cccccCCCCCCeEEeec
Q 044637 194 YYHSGVSKSLCQLHKLECLKLVNEGNMR-QLSRMILSEYKFPPSLTQLSLSNTELMEDP----MPTLEELPHLEVLKLKQ 268 (370)
Q Consensus 194 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~ 268 (370)
.....+...+...+.|+.+.+..++-.. -++-+...+..+ ++|+.|++..|.++... ...+..+|.|+.|+++.
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2233444566677778887777511000 000000034567 88999999888765433 23456788899999998
Q ss_pred ccccCceeE----EecCCCCccccEEEecCCCCCc-----eeEeCCCCCCCcceEeecCCcc
Q 044637 269 NSYLERKLV----CVGCSSFPQLKILHLKSMLWLE-----EWTMGAGAMPKLESLILNPCAY 321 (370)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~-----~i~~~~~~l~~L~~L~l~~c~~ 321 (370)
|.+....-. .. -..+|+|+.|.+.+| .++ .+.......|.|+.|++++|..
T Consensus 251 cll~~~Ga~a~~~al-~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDAL-KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHH-hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 877542210 01 234889999999995 454 2223455689999999999985
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.6e-09 Score=92.75 Aligned_cols=220 Identities=21% Similarity=0.144 Sum_probs=140.7
Q ss_pred CCcCCCcEEeeCCCC-------Cc--ccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCC
Q 044637 86 ENFFYLKYLKLNIPS-------LK--CLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSS 156 (370)
Q Consensus 86 ~~l~~L~~L~l~~~~-------~~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~ 156 (370)
..+..|.+|..++.. |. .+|-.+.-+.+|..+.++.|..+.+-.-...-|.|..+.+. +......|. +-
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~-~s~~~~~~~-l~ 256 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVH-NTTIQDVPS-LL 256 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeee-ccccccccc-cc
Confidence 345678888888743 21 45666677888999999998555443333345778888887 543222221 11
Q ss_pred CCCCCceeccccCC---CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCC
Q 044637 157 TLKNLIFISALHPG---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKF 233 (370)
Q Consensus 157 ~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~ 233 (370)
-+..+......... +.....+..+..|+++++++| ....+-++..-.|.++.|+++..+ +..+. .+..+
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~----i~~v~-nLa~L 328 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR----IRTVQ-NLAEL 328 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhcccccc---chhhhhhhhhhccceeEEeccccc----eeeeh-hhhhc
Confidence 11222222111111 333445566778889999998 667777787778888888888632 22222 34556
Q ss_pred CCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE--eCCCCCCCc
Q 044637 234 PPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKL 311 (370)
Q Consensus 234 p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~l~~L 311 (370)
++|+.|++++|.+. ....+-..+-|++.|.++.|.+..-. |.+.+-+|..|++.+ ++++.+. ..++.+|.|
T Consensus 329 -~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 329 -PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCL 401 (490)
T ss_pred -ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhh----hhHhhhhheeccccc-cchhhHHHhcccccccHH
Confidence 88899999888753 23334446778888999888775321 256677889999988 4566443 357899999
Q ss_pred ceEeecCCccc
Q 044637 312 ESLILNPCAYL 322 (370)
Q Consensus 312 ~~L~l~~c~~l 322 (370)
+.+.+.+|+..
T Consensus 402 E~l~L~~NPl~ 412 (490)
T KOG1259|consen 402 ETLRLTGNPLA 412 (490)
T ss_pred HHHhhcCCCcc
Confidence 99999998843
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=1.2e-09 Score=95.20 Aligned_cols=236 Identities=24% Similarity=0.275 Sum_probs=145.7
Q ss_pred ccCCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcC----ccccHH-------HhccccCcEEEccCCcC
Q 044637 84 GLENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYI----DHSPED-------IWMMLKLMHLNFGSITL 147 (370)
Q Consensus 84 ~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~----~~lp~~-------i~~l~~L~~L~l~~~~~ 147 (370)
.+..+..+++++|+||.+. .+.+.+.+.++|+..++++-.. .++|.. +...++|++++++ +|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS-DNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS-DNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc-ccc
Confidence 3455678889999998876 3445566777888888887622 244433 2345677777777 443
Q ss_pred -CCCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEecccc--cchhc---------HHHhhhccCCCCEEEEe
Q 044637 148 -PAPPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLS--YYHSG---------VSKSLCQLHKLECLKLV 215 (370)
Q Consensus 148 -~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~---------~~~~l~~l~~L~~L~l~ 215 (370)
+...+.. +...+..+.+|++|.+.+|+- ..... ....+.+-+.|+.+...
T Consensus 104 ~G~~g~~~------------------l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 104 FGPKGIRG------------------LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cCccchHH------------------HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 2222221 112234566666666666651 01111 22334455677777766
Q ss_pred c----CCCccccceEEEecCCCCCCceEEEEeccCCCCCCc----ccccCCCCCCeEEeecccccCc---eeEEecCCCC
Q 044637 216 N----EGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPM----PTLEELPHLEVLKLKQNSYLER---KLVCVGCSSF 284 (370)
Q Consensus 216 ~----~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~ 284 (370)
. ++...-+.. .+... +.|+.+.+..|.+..... ..+..+|.|+.|++..|.++.. .+... ...+
T Consensus 166 rNrlen~ga~~~A~---~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~ 240 (382)
T KOG1909|consen 166 RNRLENGGATALAE---AFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSW 240 (382)
T ss_pred ccccccccHHHHHH---HHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hccc
Confidence 5 110000000 23345 789999999997755433 3467899999999998887632 22222 5678
Q ss_pred ccccEEEecCCCCCce-e----Ee-CCCCCCCcceEeecCCcccC----CCchhcccCCCCcEEEecCCC
Q 044637 285 PQLKILHLKSMLWLEE-W----TM-GAGAMPKLESLILNPCAYLR----KLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 285 ~~L~~L~l~~~~~l~~-i----~~-~~~~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+.|+.|.+++|. ++. - -. .....|+|+.|.+.+|.... .+...+...+.|+.|++.+|.
T Consensus 241 ~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 899999999985 441 1 11 12458999999999998654 234455668999999999985
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=7.9e-10 Score=94.53 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=97.5
Q ss_pred CCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccC
Q 044637 65 FKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 144 (370)
.+.|+.+||++|.|+.+-.++.-.+.+|+|++++|.+..+- .+..+++|+.||+++|.+..+...-.++-|.+.|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La- 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA- 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh-
Confidence 35688899999988877777777889999999999888766 3788889999999998777766555678888888888
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC---CCCccccCCCCCccEEEEeccc
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG---SCTPDILGRLPNVQTLRISGDL 192 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~ 192 (370)
.+....+ .+++++-+|.+|++.+++ .+....+++++.|+.+.+.+|.
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 6554333 467788888888877777 3445678888888888888875
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=4.2e-09 Score=98.71 Aligned_cols=156 Identities=28% Similarity=0.371 Sum_probs=125.9
Q ss_pred hhhHHHhccCC-eeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhcc
Q 044637 56 IQCENFCKKFK-HLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMM 134 (370)
Q Consensus 56 ~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l 134 (370)
..++.....++ +|+.|+++++.+..+|..+..+++|+.|++++|++..+|...+.+++|+.|+++++.+..+|..+..+
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~ 208 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208 (394)
T ss_pred ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhh
Confidence 34455556664 99999999999998888899999999999999999999988879999999999999999999887777
Q ss_pred ccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEE
Q 044637 135 LKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK 213 (370)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 213 (370)
..|+.+.++ ++.....+..+.++.++..+.+..+. ...+..++.+++++.|+++++. ...++. ++...+++.|+
T Consensus 209 ~~L~~l~~~-~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~---i~~i~~-~~~~~~l~~L~ 283 (394)
T COG4886 209 SALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ---ISSISS-LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhc-CCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc---cccccc-ccccCccCEEe
Confidence 889999999 77555666778888888888844444 5557888899999999999983 444433 56666666666
Q ss_pred Eec
Q 044637 214 LVN 216 (370)
Q Consensus 214 l~~ 216 (370)
+++
T Consensus 284 ~s~ 286 (394)
T COG4886 284 LSG 286 (394)
T ss_pred ccC
Confidence 654
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.9e-10 Score=96.21 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=93.2
Q ss_pred CCcEEeeCCCCCc--ccChhhhcCCCCcEEecCCCcC-ccccHHHhccccCcEEEccCCcC-CCCCCCCCCCCCCCceec
Q 044637 90 YLKYLKLNIPSLK--CLPSLLCTLINLQTLEMPSSYI-DHSPEDIWMMLKLMHLNFGSITL-PAPPKNNSSTLKNLIFIS 165 (370)
Q Consensus 90 ~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~ 165 (370)
.|++|||++..++ ++...++.|.+|+.|.+.+..+ ..+-..+.+-.+|+.|+++ .|. ....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls-m~sG~t~n-------------- 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS-MCSGFTEN-------------- 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc-cccccchh--------------
Confidence 3666666666655 4444555666666666666533 2333445555566666666 332 1110
Q ss_pred cccCCCCCccccCCCCCccEEEEecccccchhcHHHhhhcc-CCCCEEEEecCCCccccceEEEecCCCCCCceEEEEec
Q 044637 166 ALHPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQL-HKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSN 244 (370)
Q Consensus 166 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~ 244 (370)
..--.+..|+.|+.|++++|. ...+..-..+... ++|..|++++....+...++..-...+ +++.+|+++.
T Consensus 251 ------~~~ll~~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc-p~l~~LDLSD 322 (419)
T KOG2120|consen 251 ------ALQLLLSSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC-PNLVHLDLSD 322 (419)
T ss_pred ------HHHHHHHhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC-Cceeeecccc
Confidence 011113344445555555543 1111111122221 344444444400000000000023456 7788888887
Q ss_pred c-CCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCC
Q 044637 245 T-ELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSML 296 (370)
Q Consensus 245 ~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 296 (370)
| .+.......+..++.|++|.++.|-......... +...|+|.+|++.+|-
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEecccc
Confidence 7 4445556667788888888888775543332334 6778889999888863
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.4e-08 Score=82.69 Aligned_cols=106 Identities=24% Similarity=0.231 Sum_probs=53.0
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhh-hcCCCCcEEecCCCcCcccc--HHHhccccCcE
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLL-CTLINLQTLEMPSSYIDHSP--EDIWMMLKLMH 139 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~ 139 (370)
..+.+|++|++++|.++.+. .+..+++|+.|++++|.++.+++.+ ..+++|++|++++|.+..+. ..+..+++|+.
T Consensus 39 ~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 39 ATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 36789999999999999765 5788999999999999999987655 46999999999999665443 45778999999
Q ss_pred EEccCCcCCCCCCC----CCCCCCCCceeccccCC
Q 044637 140 LNFGSITLPAPPKN----NSSTLKNLIFISALHPG 170 (370)
Q Consensus 140 L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 170 (370)
|++. +|.....+. .+..+|+|+.|+.....
T Consensus 118 L~L~-~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLE-GNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-T-T-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eecc-CCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 9999 665333222 24567888888854444
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=93.12 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=37.8
Q ss_pred eeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCc-ccChhhhcCCCCcEEecCCCcC-ccccHHHhccccCcEEEcc
Q 044637 68 LRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLK-CLPSLLCTLINLQTLEMPSSYI-DHSPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 68 L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L~l~ 143 (370)
++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|.+ ..+|..++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 444555555544 44444555555555555555544 4444455555555555555533 2444445555555555555
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=1.5e-09 Score=96.69 Aligned_cols=249 Identities=18% Similarity=0.166 Sum_probs=154.7
Q ss_pred CCcEEeeCCCCCc---ccChhhhcCCCCcEEecCCC-cCcc--ccHHHhccccCcEEEccCCcCCCC---CCCCCCCCCC
Q 044637 90 YLKYLKLNIPSLK---CLPSLLCTLINLQTLEMPSS-YIDH--SPEDIWMMLKLMHLNFGSITLPAP---PKNNSSTLKN 160 (370)
Q Consensus 90 ~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~ 160 (370)
.|+.|.++|+.-. .+-....++++++.|++.+| ++.. +-..-..+.+|+++++. .|...+ +......|++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~-~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH-SCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc-ccchhHHHHHHHHHHhhhh
Confidence 5778888886522 44455667888888888888 4432 11223467888888888 665211 1112346888
Q ss_pred CceeccccCC----CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEec--CCCC
Q 044637 161 LIFISALHPG----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSE--YKFP 234 (370)
Q Consensus 161 L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~--~~~p 234 (370)
|++++++.|. ..+-.....+..++.+...+|.......+...-+.+..+..+++..++ .+..-.+|. ..+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~---~lTD~~~~~i~~~c- 293 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN---QLTDEDLWLIACGC- 293 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc---cccchHHHHHhhhh-
Confidence 8888888877 222233445666777766676522333333333334444444433311 011111111 235
Q ss_pred CCceEEEEeccCCCC-CCcccc-cCCCCCCeEEeeccc-ccCceeEEecCCCCccccEEEecCCCCCc--eeEeCCCCCC
Q 044637 235 PSLTQLSLSNTELME-DPMPTL-EELPHLEVLKLKQNS-YLERKLVCVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMP 309 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~-~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~l~ 309 (370)
..|++++.++|...+ .....+ .+.++|+.|.+..|+ +++..+... ..+.+.|+.+++..|..+. ++......+|
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 788999999985333 333334 478999999999886 444443333 4567899999999986544 3444456899
Q ss_pred CcceEeecCCcccCCC-----chhcccCCCCcEEEecCCC
Q 044637 310 KLESLILNPCAYLRKL-----PEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 310 ~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~~~ 344 (370)
.|+.+.++.|..+..- ......+..|+.+++++||
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 9999999999876633 3344567789999999999
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=1.8e-07 Score=62.38 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=38.4
Q ss_pred CeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCc
Q 044637 66 KHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSY 123 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 123 (370)
++|++|++++|.++.+| ..|..+++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35677777777766555 35566777777777777777554 356677777777776663
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=5.6e-07 Score=88.85 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=89.9
Q ss_pred ceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEee
Q 044637 237 LTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIL 316 (370)
Q Consensus 237 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l 316 (370)
++.|+|++|.+.+..|..++.+++|+.|++++|.+.+.. +.. ++.+++|+.|+|+++.--..+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 788999999988889999999999999999999887755 444 788999999999996544478888999999999999
Q ss_pred cCCcccCCCchhcccC-CCCcEEEecCCC
Q 044637 317 NPCAYLRKLPEELWCI-KSLCKLELHWPQ 344 (370)
Q Consensus 317 ~~c~~l~~l~~~~~~l-~~L~~L~l~~~~ 344 (370)
++|.....+|..+... .++..+++.+|+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9999888999887653 467788888775
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=3.3e-07 Score=61.14 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=49.4
Q ss_pred CCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCCc
Q 044637 89 FYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSIT 146 (370)
Q Consensus 89 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 146 (370)
++|++|++++|.+..+| ..+..+++|++|++++|.+..+++ .+..+++|++|+++ +|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~-~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS-NN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET-SS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc-CC
Confidence 57899999999999887 467889999999999998888875 56889999999998 54
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.1e-07 Score=78.80 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=39.2
Q ss_pred CccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEE--ecCCCCCCceEEEEeccCCCC-CCcccccCC
Q 044637 182 NVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMIL--SEYKFPPSLTQLSLSNTELME-DPMPTLEEL 258 (370)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~~p~~L~~L~l~~~~~~~-~~~~~l~~l 258 (370)
.+++++...|..........--..++++..+-++.+. ++.+.- ....+ +.+.-|.++.+++.+ .....+.++
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P----lK~~s~ek~se~~-p~~~~LnL~~~~idswasvD~Ln~f 248 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP----LKTESSEKGSEPF-PSLSCLNLGANNIDSWASVDALNGF 248 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc----ccchhhcccCCCC-CcchhhhhcccccccHHHHHHHcCC
Confidence 4556666666422222222223334555555554310 111100 23334 555556666655533 223345666
Q ss_pred CCCCeEEeeccccc
Q 044637 259 PHLEVLKLKQNSYL 272 (370)
Q Consensus 259 ~~L~~L~l~~~~~~ 272 (370)
|.|..|.+.++.+.
T Consensus 249 ~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 249 PQLVDLRVSENPLS 262 (418)
T ss_pred chhheeeccCCccc
Confidence 66666666665543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=9e-08 Score=90.13 Aligned_cols=243 Identities=23% Similarity=0.253 Sum_probs=142.8
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
..+..++.+.+..+.+...-..++.+.+|.+|++.+|.+..+...+..+++|++|++++|.+..+. ++..++.|+.|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 355666677777777765445577888999999999988877755788899999999999888875 5777888999999
Q ss_pred cCCcCCCCCCCCCCCCCCCceeccccCC-CCCccc-cCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCc
Q 044637 143 GSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDI-LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNM 220 (370)
Q Consensus 143 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 220 (370)
. +|....+ .++..+++|+.+++..+. ..+... +..+.+++.+.+.++. ... ...+..+..+..+++....
T Consensus 148 ~-~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~n~-- 219 (414)
T KOG0531|consen 148 S-GNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLDNK-- 219 (414)
T ss_pred c-cCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccccc--
Confidence 8 6665444 345557788888866655 222221 4677778888887774 111 1111111111111222100
Q ss_pred cccceEEEecCCCCCC--ceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 221 RQLSRMILSEYKFPPS--LTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 221 ~~L~~L~l~~~~~p~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
+..+. .+... .. |+.+++.++.+.. .+..+..++++..|++..+.+..... ....+.+..+........
T Consensus 220 --i~~~~-~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 --ISKLE-GLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDNKLA 290 (414)
T ss_pred --ceecc-Ccccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc----ccccchHHHhccCcchhc
Confidence 11000 11112 22 6777777776532 22455667777777777666544221 334455555555542211
Q ss_pred c--eeEe--CCCCCCCcceEeecCCcccC
Q 044637 299 E--EWTM--GAGAMPKLESLILNPCAYLR 323 (370)
Q Consensus 299 ~--~i~~--~~~~l~~L~~L~l~~c~~l~ 323 (370)
. .... .....+.++.+.+..++.-.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chhhhhccccccccccccccccccCcccc
Confidence 1 1111 14566777777777776443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.2e-06 Score=53.71 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcccc
Q 044637 90 YLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSP 128 (370)
Q Consensus 90 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp 128 (370)
+|++|++++|+++.+|..+++|++|++|++++|.+..++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 556666666666666655666666666666666555443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.5e-06 Score=53.34 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.1
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP 105 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 105 (370)
++|++|++++|.++.+|+.+++|++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999888999999999999999998765
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=4.1e-07 Score=85.67 Aligned_cols=220 Identities=22% Similarity=0.193 Sum_probs=135.2
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..++.+..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..+. ++..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 57889999999999999876665788999999999999999876 5677888999999999887775 556699999999
Q ss_pred ccCCcCCCCCCCC-CCCCCCCceeccccCCCCCccccCCCCCccEEEEecccccchhcHHHhhhccC--CCCEEEEecCC
Q 044637 142 FGSITLPAPPKNN-SSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH--KLECLKLVNEG 218 (370)
Q Consensus 142 l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~ 218 (370)
++ .+....+... +..+.+++.+.+..+.......+..+..+..+++..+.-.....+ ..+. +|+.+++....
T Consensus 169 l~-~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l----~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LS-YNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL----NELVMLHLRELYLSGNR 243 (414)
T ss_pred CC-cchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc----ccchhHHHHHHhcccCc
Confidence 99 6665544432 467788888886655533333344444444444444420011111 1111 25555555411
Q ss_pred CccccceE-EEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCce--eEEecCCCCccccEEEecCC
Q 044637 219 NMRQLSRM-ILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERK--LVCVGCSSFPQLKILHLKSM 295 (370)
Q Consensus 219 ~~~~L~~L-~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 295 (370)
+... . .+..+ ..+..+++.++.+.. ...+...+.+..+....+.+.... ....+....+.+..+.+...
T Consensus 244 ----i~~~~~-~~~~~-~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 244 ----ISRSPE-GLENL-KNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred ----cccccc-ccccc-ccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 1111 0 23445 777888888776432 122334455555555555443111 01101344567777777764
Q ss_pred C
Q 044637 296 L 296 (370)
Q Consensus 296 ~ 296 (370)
+
T Consensus 316 ~ 316 (414)
T KOG0531|consen 316 P 316 (414)
T ss_pred c
Confidence 3
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=5.2e-07 Score=77.46 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCceEEEEeccCCCCC-CcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 235 PSLTQLSLSNTELMED-PMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
+++..+-+..|++.+. .-.....+|.+-.|+++.+++.+-..... ...|++|..|.+.+.+-.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCccc
Confidence 5555555655544321 11223345555556665555543322222 455666666666554433
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=1.2e-06 Score=86.50 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=37.8
Q ss_pred CeeeEEEcCCCC-cc-cCCcccC-CcCCCcEEeeCCCCCc--ccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEE
Q 044637 66 KHLRVLNLGSAV-LD-QYPPGLE-NFFYLKYLKLNIPSLK--CLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHL 140 (370)
Q Consensus 66 ~~L~~L~L~~~~-~~-~~~~~~~-~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 140 (370)
.+|+.|+++|.. +. .=|..++ .||.|+.|.++|-.+. ++.....+++||..||++++.+..+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 345555555543 22 2222222 2555555555554433 2223334455566666666555555 455555555555
Q ss_pred Ecc
Q 044637 141 NFG 143 (370)
Q Consensus 141 ~l~ 143 (370)
.+.
T Consensus 201 ~mr 203 (699)
T KOG3665|consen 201 SMR 203 (699)
T ss_pred hcc
Confidence 555
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.1e-07 Score=90.63 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=78.6
Q ss_pred CcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCC-CCCCCCCCceeccccC
Q 044637 91 LKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKN-NSSTLKNLIFISALHP 169 (370)
Q Consensus 91 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 169 (370)
|...++++|.+..+-+++.-++.|+.||+++|++..+. .+..+++|++||+++|| ...+|. +...|. |+.|.+.++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc
Confidence 44555555555555556667788999999999887774 78889999999999665 344442 233444 788875555
Q ss_pred CCCCccccCCCCCccEEEEecccccchhcH--HHhhhccCCCCEEEEec
Q 044637 170 GSCTPDILGRLPNVQTLRISGDLSYYHSGV--SKSLCQLHKLECLKLVN 216 (370)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~l~~L~~L~l~~ 216 (370)
.-.....+.++.+|+.|+++.|. .... ...+..+..|+.|++.+
T Consensus 243 ~l~tL~gie~LksL~~LDlsyNl---l~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYNL---LSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHhh---hhcchhhhHHHHHHHHHHHhhcC
Confidence 44445567788888888888873 2221 12344455666666665
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.3e-05 Score=71.85 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=93.0
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCC-CcccChhhhcCCCCcEEecCCC-cCccccHHHhccccCcE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPS-LKCLPSLLCTLINLQTLEMPSS-YIDHSPEDIWMMLKLMH 139 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~ 139 (370)
+..+++++.|++++|.++.+|. + ..+|+.|.++++. ++.+|..+. .+|++|++++| .+..+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 4556899999999998888873 2 3479999999854 667786553 58999999999 7777775 4677
Q ss_pred EEccCCcC---CCCCCCCCCCCCCCceeccccCCCCCccccC-CC-CCccEEEEecccccchhcHHHhhhccCCCCEEEE
Q 044637 140 LNFGSITL---PAPPKNNSSTLKNLIFISALHPGSCTPDILG-RL-PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL 214 (370)
Q Consensus 140 L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 214 (370)
|++. .+. ...+|. +|+.|.+.+.+......+. .+ ++|+.|.+.+|. ...+|..+. .+|+.|.+
T Consensus 117 L~L~-~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~---~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIK-GSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS---NIILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeC-CCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCC---cccCccccc--ccCcEEEe
Confidence 7776 433 334444 4556654332211011111 12 578999998874 222332221 46777776
Q ss_pred ecCCCccccceEEEecCCCCCCceEEEEecc
Q 044637 215 VNEGNMRQLSRMILSEYKFPPSLTQLSLSNT 245 (370)
Q Consensus 215 ~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~ 245 (370)
+... ...+.+....+|+++ .|.+.+|
T Consensus 185 s~n~----~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 185 HIEQ----KTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccc----cccccCccccccccc-Eechhhh
Confidence 5411 112222333455556 6666554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=5.1e-06 Score=82.22 Aligned_cols=100 Identities=23% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCcEEeeCCCCCc--ccChhhh-cCCCCcEEecCCCcC--ccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCcee
Q 044637 90 YLKYLKLNIPSLK--CLPSLLC-TLINLQTLEMPSSYI--DHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFI 164 (370)
Q Consensus 90 ~L~~L~l~~~~~~--~lp~~~~-~l~~L~~L~l~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 164 (370)
+|++|+++|...- .-|..++ .||.|+.|.+++-.+ .++-....++|+|..||++ ++....+ .+++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc-HHHhccccHHHH
Confidence 4666666664321 2233333 356666666665422 2233334456666666666 4433333 455566666666
Q ss_pred ccccCC---CCCccccCCCCCccEEEEecc
Q 044637 165 SALHPG---SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 165 ~l~~~~---~~~~~~l~~l~~L~~L~l~~~ 191 (370)
.+.+.. ......+..+++|+.|+++..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 544433 122234445556666666554
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=4.2e-06 Score=63.84 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=75.0
Q ss_pred HHHhccCCeeeEEEcCCCCcccCCcccC-CcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccC
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYPPGLE-NFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKL 137 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 137 (370)
...+.+-..|+..+|++|.+..+|+.|. .++.++.|++++|.+..+|.++..++.|+.|+++.|.+...|.-+..|.+|
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhH
Confidence 3445667788889999998887777665 456888999999999999988999999999999999888888888888888
Q ss_pred cEEEccCCcCCCCCCC
Q 044637 138 MHLNFGSITLPAPPKN 153 (370)
Q Consensus 138 ~~L~l~~~~~~~~~~~ 153 (370)
-.|+.. ++....++.
T Consensus 126 ~~Lds~-~na~~eid~ 140 (177)
T KOG4579|consen 126 DMLDSP-ENARAEIDV 140 (177)
T ss_pred HHhcCC-CCccccCcH
Confidence 888887 555444443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=5.1e-05 Score=69.66 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=68.3
Q ss_pred eeeEEEcCCCC-cccCCcccCCcCCCcEEeeCCC-CCcccChhhhcCCCCcEEecCCC---cCccccHHHhccccCcEEE
Q 044637 67 HLRVLNLGSAV-LDQYPPGLENFFYLKYLKLNIP-SLKCLPSLLCTLINLQTLEMPSS---YIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 67 ~L~~L~L~~~~-~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~---~~~~lp~~i~~l~~L~~L~ 141 (370)
+|++|.+++|. ++.+|..+. .+|++|++++| .+..+|. +|+.|++..+ .+..+|.+ |+.|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPss------Lk~L~ 138 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPNG------LTSLS 138 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCCcccccCcch------Hhhee
Confidence 69999999876 567776553 58999999998 6777874 4667777665 35566654 55666
Q ss_pred ccCCcC--CCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecc
Q 044637 142 FGSITL--PAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 142 l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 191 (370)
+.+.+. ...+|.. -.++|++|.+.+|. ...|..+. .+|+.|.++.+
T Consensus 139 I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 139 INSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 641111 1111211 12578888877776 44444343 57888888664
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=4.9e-06 Score=63.47 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=80.1
Q ss_pred CeeeEEEcCCCCcccC---CcccCCcCCCcEEeeCCCCCcccChhhhc-CCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 66 KHLRVLNLGSAVLDQY---PPGLENFFYLKYLKLNIPSLKCLPSLLCT-LINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+.+-.++|++|.+..+ +..+....+|...++++|.+..+|+.+.. .+.+..|++++|.+..+|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3455678888876633 34455667888899999999999988764 4589999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceecc
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISA 166 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l 166 (370)
++ ++.....|..+..+.++..|+.
T Consensus 107 l~-~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 107 LR-FNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred cc-cCccccchHHHHHHHhHHHhcC
Confidence 99 8777777776766777777763
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.61 E-value=4.5e-05 Score=65.05 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=132.8
Q ss_pred ccCCeeeEEEcCCCCcc-----cCCcccCCcCCCcEEeeCCCCCc----ccC-------hhhhcCCCCcEEecCCCcC-c
Q 044637 63 KKFKHLRVLNLGSAVLD-----QYPPGLENFFYLKYLKLNIPSLK----CLP-------SLLCTLINLQTLEMPSSYI-D 125 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~lp-------~~~~~l~~L~~L~l~~~~~-~ 125 (370)
..+..++.++|++|-|. .+...+.+-++|+..+++.-... .++ +.+-+|++|+..++++|.+ .
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44788999999999986 45556667788999888863211 333 3456899999999999943 2
Q ss_pred ccc----HHHhccccCcEEEccCCcCCCCCCCC-CCCCCCCceeccccCCCCCccccCCCCCccEEEEeccc-ccchhc-
Q 044637 126 HSP----EDIWMMLKLMHLNFGSITLPAPPKNN-SSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDL-SYYHSG- 198 (370)
Q Consensus 126 ~lp----~~i~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~- 198 (370)
..| .-+++-..|+||.++ ||..+.+..+ +++ .|..|. ...-...-+.|++..+..|. ......
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigk--al~~la-------~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGK--ALFHLA-------YNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEee-cCCCCccchhHHHH--HHHHHH-------HHhhhccCCCceEEEeccchhccCcHHH
Confidence 333 346677899999999 8875443221 110 111111 00112233445555555443 001111
Q ss_pred HHHhhhccCCCCEEEEecCCCcc-ccceEEE-ecCCCCCCceEEEEeccCCCCCCccc----ccCCCCCCeEEeeccccc
Q 044637 199 VSKSLCQLHKLECLKLVNEGNMR-QLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPT----LEELPHLEVLKLKQNSYL 272 (370)
Q Consensus 199 ~~~~l~~l~~L~~L~l~~~~~~~-~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 272 (370)
....+..-.+|+.+.+...+-.. -+..|-+ ....+ .+|+.|++..|.++...... +...+.|+.|.+..|-+.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 11122222345555554311000 0000000 12234 67777777777654433322 345677788888766554
Q ss_pred CceeEEe----cCCCCccccEEEecCCCCCceeE-------eCCCCCCCcceEeecCCcc
Q 044637 273 ERKLVCV----GCSSFPQLKILHLKSMLWLEEWT-------MGAGAMPKLESLILNPCAY 321 (370)
Q Consensus 273 ~~~~~~~----~~~~~~~L~~L~l~~~~~l~~i~-------~~~~~l~~L~~L~l~~c~~ 321 (370)
....... .-.-+|+|..|...++..-..+. ...+.+|-|..|.+.+|+.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 3221000 01235777777777633211111 1235788888888888874
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=6.9e-07 Score=85.38 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=40.1
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCccccHHHhccccCcEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHL 140 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 140 (370)
+.-++.++.|+|+.|.+..+- .+..|++|+.|||++|.+..+|.. ...+. |+.|.+++|.+..+ .++.+|.+|+.|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhcc
Confidence 333445555555555554332 344555555555555555544421 12222 55555555555444 245555555555
Q ss_pred EccCC
Q 044637 141 NFGSI 145 (370)
Q Consensus 141 ~l~~~ 145 (370)
|+++|
T Consensus 260 DlsyN 264 (1096)
T KOG1859|consen 260 DLSYN 264 (1096)
T ss_pred chhHh
Confidence 55533
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=8.4e-06 Score=78.41 Aligned_cols=99 Identities=25% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCceEEEEeccCCCC---CCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCc
Q 044637 235 PSLTQLSLSNTELME---DPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKL 311 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L 311 (370)
+.++.+.+.++.... ........+++++.+.+..+.......... ..+++.|. ..+.........+
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-l~gc~~l~----------~~l~~~~~~~~~l 403 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS-LRGCPNLT----------ESLELRLCRSDSL 403 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-hcCCcccc----------hHHHHHhccCCcc
Confidence 445555555543211 112234577888888777666332221122 33344431 1111112222337
Q ss_pred ceEeecCCcccCCCc-hhccc-CCCCcEEEecCCC
Q 044637 312 ESLILNPCAYLRKLP-EELWC-IKSLCKLELHWPQ 344 (370)
Q Consensus 312 ~~L~l~~c~~l~~l~-~~~~~-l~~L~~L~l~~~~ 344 (370)
+.|++..|.....-- ..... +..++.+++.+|+
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 777777777554211 11111 5667777777776
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00029 Score=57.55 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=59.7
Q ss_pred CCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHh-ccccCcEEEccCCcCCCCCC--CCCCCCCCCceecc
Q 044637 90 YLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIW-MMLKLMHLNFGSITLPAPPK--NNSSTLKNLIFISA 166 (370)
Q Consensus 90 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l 166 (370)
....+||+.|.+..++ .+..++.|.+|.+..|.+..+.+.+. .+++|+.|.+. ++....+. ..+..|+.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccceeee
Confidence 4556777777776555 55667778888888777766655554 35668888877 55422221 23556666666665
Q ss_pred ccCC-----CCCccccCCCCCccEEEEecc
Q 044637 167 LHPG-----SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 167 ~~~~-----~~~~~~l~~l~~L~~L~l~~~ 191 (370)
.++. ..-.-.+..+++|+.|+..+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5555 111122445666666666554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.0011 Score=54.24 Aligned_cols=103 Identities=19% Similarity=0.094 Sum_probs=65.6
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhh-cCCCCcEEecCCCcCcccc--HHHhccccCcEEEc
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLC-TLINLQTLEMPSSYIDHSP--EDIWMMLKLMHLNF 142 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l 142 (370)
...-.+||++|.+..++ .+..++.|..|.+++|.|+.+-..+. -+++|..|.+.+|.+.++. ..+..+|+|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34556778887766443 35667788888888888886644444 4567888888887554432 23556778888877
Q ss_pred cCCcCCCCCC----CCCCCCCCCceeccccCC
Q 044637 143 GSITLPAPPK----NNSSTLKNLIFISALHPG 170 (370)
Q Consensus 143 ~~~~~~~~~~----~~l~~l~~L~~L~l~~~~ 170 (370)
- ++...... ..++.+++|+.|++....
T Consensus 121 l-~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 L-GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred c-CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7 44322111 246677888888855554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00012 Score=62.81 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=48.3
Q ss_pred HhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh--hhhcCCCCcEEecCCC-cCccccH-----HHh
Q 044637 61 FCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS--LLCTLINLQTLEMPSS-YIDHSPE-----DIW 132 (370)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~-~~~~lp~-----~i~ 132 (370)
++.+|+.|++|.|+-|.|+.+.+ +..|.+|+.|.|+.|.|..+-+ -+.++++|+.|.|..| ....-+. -+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 45677777777777777664432 5667777777777777665542 3456666777777666 2222221 244
Q ss_pred ccccCcEEE
Q 044637 133 MMLKLMHLN 141 (370)
Q Consensus 133 ~l~~L~~L~ 141 (370)
.||+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666665
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00064 Score=57.82 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCC--CCc-ccChhhhcCCCCcEEecCCCcCcccc--HHHhccccC
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIP--SLK-CLPSLLCTLINLQTLEMPSSYIDHSP--EDIWMMLKL 137 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L 137 (370)
..+..|..|++.+..++.+ ..+..+++|++|.++.| .+. .++....++++|++|++++|++..+. ..+.++.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4445555555555554422 12344667777777777 333 45544555677777777777443211 234566777
Q ss_pred cEEEccCCcCCCCCCC----CCCCCCCCceeccccCC
Q 044637 138 MHLNFGSITLPAPPKN----NSSTLKNLIFISALHPG 170 (370)
Q Consensus 138 ~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 170 (370)
..|++. +|....+.. .+.-+++|.+|+-....
T Consensus 119 ~~Ldl~-n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLF-NCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcc-cCCccccccHHHHHHHHhhhhccccccccC
Confidence 777777 665222211 12335566666544443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00089 Score=56.99 Aligned_cols=91 Identities=20% Similarity=0.118 Sum_probs=66.1
Q ss_pred hccCCeeeEEEcCCCC--cc-cCCcccCCcCCCcEEeeCCCCCccc--ChhhhcCCCCcEEecCCCcCcccc----HHHh
Q 044637 62 CKKFKHLRVLNLGSAV--LD-QYPPGLENFFYLKYLKLNIPSLKCL--PSLLCTLINLQTLEMPSSYIDHSP----EDIW 132 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~--~~-~~~~~~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~lp----~~i~ 132 (370)
+..+++|+.|.++.|. +. .++.-...+++|++|++++|++..+ -.-+..+++|..|++..|...++- ..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4678899999999994 44 5555555679999999999998732 224678899999999999544333 2355
Q ss_pred ccccCcEEEccCCcCCCCCCC
Q 044637 133 MMLKLMHLNFGSITLPAPPKN 153 (370)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~~~~ 153 (370)
-+++|++|+-. .......|.
T Consensus 141 ll~~L~~LD~~-dv~~~Ea~~ 160 (260)
T KOG2739|consen 141 LLPSLKYLDGC-DVDGEEAPE 160 (260)
T ss_pred Hhhhhcccccc-ccCCccccc
Confidence 68999999876 544444443
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=0.00048 Score=58.95 Aligned_cols=233 Identities=16% Similarity=0.131 Sum_probs=127.4
Q ss_pred CCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcC----ccccH-------HHhccccCcEEEccCCcC-C
Q 044637 86 ENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYI----DHSPE-------DIWMMLKLMHLNFGSITL-P 148 (370)
Q Consensus 86 ~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~----~~lp~-------~i~~l~~L~~L~l~~~~~-~ 148 (370)
..+..+..++|+||.|. .+...+.+-.+|+..+++.-.. .++|. .+-++|+|+..+++ ++. +
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS-DNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS-DNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc-ccccC
Confidence 34667788888888776 2344455566788877776522 22332 23455666666666 333 3
Q ss_pred CCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEeccccc--chhcHH---------HhhhccCCCCEEEEec-
Q 044637 149 APPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLSY--YHSGVS---------KSLCQLHKLECLKLVN- 216 (370)
Q Consensus 149 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~---------~~l~~l~~L~~L~l~~- 216 (370)
...|..+ ...+.+-++|.+|.+++|+-+ ..+.+- ....+-|.|+.+....
T Consensus 106 ~~~~e~L------------------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 106 SEFPEEL------------------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cccchHH------------------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3333211 123456677888888887611 111111 2233445676665543
Q ss_pred ---CCCccccceEEEecCCCCCCceEEEEeccCCCCCCcc-----cccCCCCCCeEEeecccccCc---eeEEecCCCCc
Q 044637 217 ---EGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMP-----TLEELPHLEVLKLKQNSYLER---KLVCVGCSSFP 285 (370)
Q Consensus 217 ---~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~ 285 (370)
++.. +.....+..- ..|+.+.+..|.+...... .+..+.+|+.|++..|.++.. .+... ....+
T Consensus 168 Rlengs~---~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a-l~~W~ 242 (388)
T COG5238 168 RLENGSK---ELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA-LCEWN 242 (388)
T ss_pred hhccCcH---HHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH-hcccc
Confidence 1110 0000011112 5788888888877554322 245678899999988876532 11122 44567
Q ss_pred cccEEEecCCCCCce-----eE--eCCCCCCCcceEeecCCcccCC------Cchhc-ccCCCCcEEEecCC
Q 044637 286 QLKILHLKSMLWLEE-----WT--MGAGAMPKLESLILNPCAYLRK------LPEEL-WCIKSLCKLELHWP 343 (370)
Q Consensus 286 ~L~~L~l~~~~~l~~-----i~--~~~~~l~~L~~L~l~~c~~l~~------l~~~~-~~l~~L~~L~l~~~ 343 (370)
.|+.|.+.+|- ++. +- ..-...|+|..|...++..-.. ++... ..+|-|..+.+.|+
T Consensus 243 ~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 243 LLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred hhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 78888888873 321 11 1123578889998888874332 22211 34666777777766
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.56 E-value=0.0003 Score=67.66 Aligned_cols=32 Identities=31% Similarity=0.260 Sum_probs=18.2
Q ss_pred eEeecCCccc-CCCchhcccCCCCcEEEecCCC
Q 044637 313 SLILNPCAYL-RKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 313 ~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
.+.+.+|+.+ ..+........+++.|++.+|.
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCR 412 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCc
Confidence 4555666655 2222222333348899999886
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00013 Score=62.48 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=76.9
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcccc--HHHhccccCcEE
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSP--EDIWMMLKLMHL 140 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L 140 (370)
+.+.+++.|+.-||.++.+. ...+++.|++|.|+-|.|+++. .+..|++|++|.|+.|.+..+. .-+.++|+|+.|
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678889999999987442 2457999999999999999886 5788999999999999766554 346789999999
Q ss_pred EccCCcC-CCCCCC-----CCCCCCCCceeccc
Q 044637 141 NFGSITL-PAPPKN-----NSSTLKNLIFISAL 167 (370)
Q Consensus 141 ~l~~~~~-~~~~~~-----~l~~l~~L~~L~l~ 167 (370)
.+. .+. .+.-+. .+.-+++|+.|+=.
T Consensus 94 WL~-ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLD-ENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhc-cCCcccccchhHHHHHHHHcccchhccCc
Confidence 998 544 222221 24557888888733
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.19 E-value=0.0017 Score=33.09 Aligned_cols=17 Identities=41% Similarity=0.639 Sum_probs=7.6
Q ss_pred CcEEeeCCCCCcccChh
Q 044637 91 LKYLKLNIPSLKCLPSL 107 (370)
Q Consensus 91 L~~L~l~~~~~~~lp~~ 107 (370)
|++|++++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444433
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.53 E-value=0.0049 Score=31.38 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.4
Q ss_pred CCcEEecCCCcCccccHHHhc
Q 044637 113 NLQTLEMPSSYIDHSPEDIWM 133 (370)
Q Consensus 113 ~L~~L~l~~~~~~~lp~~i~~ 133 (370)
+|++||+++|.+..+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578888888877777766543
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.00085 Score=54.91 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=58.6
Q ss_pred CceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCce-eEEecCCCCccccEEEecCCCCCceeE-eCCCCCCCcce
Q 044637 236 SLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERK-LVCVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLES 313 (370)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~l~~L~~ 313 (370)
.++.++-+++.+.....+.+..++.++.|++.+|..-++. +... .+.+++|+.|+|++|+.+++-- ..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4677777777766666777788888888888877654322 1111 3356788888888888777432 34567788888
Q ss_pred EeecCCcccC
Q 044637 314 LILNPCAYLR 323 (370)
Q Consensus 314 L~l~~c~~l~ 323 (370)
|.+.+-+.+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 8887765443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.90 E-value=0.018 Score=27.15 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=5.2
Q ss_pred CCcEEeeCCCCCccc
Q 044637 90 YLKYLKLNIPSLKCL 104 (370)
Q Consensus 90 ~L~~L~l~~~~~~~l 104 (370)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.48 E-value=0.09 Score=40.38 Aligned_cols=80 Identities=10% Similarity=0.173 Sum_probs=36.8
Q ss_pred HhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccH-HHhccccC
Q 044637 61 FCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPE-DIWMMLKL 137 (370)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L 137 (370)
.|..+++|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++. .+.++++|+.+.+.. .+..++. .+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 356666777777764 333222 34566667777777664 554432 355666677777754 2333332 23346666
Q ss_pred cEEEcc
Q 044637 138 MHLNFG 143 (370)
Q Consensus 138 ~~L~l~ 143 (370)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 666665
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.74 E-value=0.0019 Score=54.10 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=56.4
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
..++..++||++.+.+..+-..++.+..|..|+++.+.+..+|+.++.+..++.+++..|...+.|...++++.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 56677777777777655555556666677777777777777777777666777777766666677777777777777776
Q ss_pred c
Q 044637 143 G 143 (370)
Q Consensus 143 ~ 143 (370)
.
T Consensus 119 k 119 (326)
T KOG0473|consen 119 K 119 (326)
T ss_pred c
Confidence 6
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.57 E-value=0.19 Score=38.59 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=46.9
Q ss_pred ccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCCcCCCCCC-CCCCCCCC
Q 044637 84 GLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSITLPAPPK-NNSSTLKN 160 (370)
Q Consensus 84 ~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 160 (370)
.+..+.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..++. .+..+++|+.+.+. +.. ..++ ..+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~-~~~-~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP-NNL-KSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET-STT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc-ccc-ccccccccccccc
Confidence 456677888888875 4555543 4667778888888765 555443 34556577888876 432 2222 33455677
Q ss_pred CceeccccCCCCC-ccccCCCCCccEEEEec
Q 044637 161 LIFISALHPGSCT-PDILGRLPNVQTLRISG 190 (370)
Q Consensus 161 L~~L~l~~~~~~~-~~~l~~l~~L~~L~l~~ 190 (370)
++.+.+......+ ...+..+ +|+.+.+..
T Consensus 83 l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCccccEEchhhhcCC-CceEEEECC
Confidence 7777643222111 1223444 666666554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.0057 Score=50.20 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=60.2
Q ss_pred CCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe--CCCCCCCcceEeecCCcccCCC-chhcccCCCCcE
Q 044637 261 LEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKL-PEELWCIKSLCK 337 (370)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~ 337 (370)
++.++-+++.+..+.+.- +..+++++.|.+.+|..+..|.- --+-.|+|+.|+|++|+.+++- -..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~--L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH--LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHH--HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 455555655554443222 56788999999999998886642 2247899999999999988753 356778999999
Q ss_pred EEecCCC
Q 044637 338 LELHWPQ 344 (370)
Q Consensus 338 L~l~~~~ 344 (370)
|.+.+-+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 9998865
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.29 E-value=0.22 Score=26.22 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=9.2
Q ss_pred CCCcEEecCCCcCccccHH
Q 044637 112 INLQTLEMPSSYIDHSPED 130 (370)
Q Consensus 112 ~~L~~L~l~~~~~~~lp~~ 130 (370)
++|++|++++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555544444443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.29 E-value=0.22 Score=26.22 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=9.2
Q ss_pred CCCcEEecCCCcCccccHH
Q 044637 112 INLQTLEMPSSYIDHSPED 130 (370)
Q Consensus 112 ~~L~~L~l~~~~~~~lp~~ 130 (370)
++|++|++++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555544444443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.76 E-value=0.25 Score=26.03 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=15.6
Q ss_pred cCCCcEEeeCCCCCcccChhh
Q 044637 88 FFYLKYLKLNIPSLKCLPSLL 108 (370)
Q Consensus 88 l~~L~~L~l~~~~~~~lp~~~ 108 (370)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888887653
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.76 E-value=0.25 Score=26.03 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=15.6
Q ss_pred cCCCcEEeeCCCCCcccChhh
Q 044637 88 FFYLKYLKLNIPSLKCLPSLL 108 (370)
Q Consensus 88 l~~L~~L~l~~~~~~~lp~~~ 108 (370)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888887653
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.02 E-value=0.016 Score=48.82 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=69.9
Q ss_pred ccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCce
Q 044637 84 GLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIF 163 (370)
Q Consensus 84 ~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 163 (370)
.+..+...++||++.+++-.+-..++.++.|..||++.+.+..+|...+++..+++++.. ++.....|.+.+..+.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh-ccchhhCCccccccCCcch
Confidence 456678889999999988888888888999999999999899999999999999999988 6656677888888888877
Q ss_pred ecccc
Q 044637 164 ISALH 168 (370)
Q Consensus 164 L~l~~ 168 (370)
++.-.
T Consensus 116 ~e~k~ 120 (326)
T KOG0473|consen 116 NEQKK 120 (326)
T ss_pred hhhcc
Confidence 76433
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.57 E-value=1.3 Score=23.24 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=9.2
Q ss_pred CCCcceEeecCCcccC
Q 044637 308 MPKLESLILNPCAYLR 323 (370)
Q Consensus 308 l~~L~~L~l~~c~~l~ 323 (370)
+++|+.|++.+|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3556666666665444
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.00 E-value=1.8 Score=22.86 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=10.4
Q ss_pred CCcEEeeCCCCCcccCh
Q 044637 90 YLKYLKLNIPSLKCLPS 106 (370)
Q Consensus 90 ~L~~L~l~~~~~~~lp~ 106 (370)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666663
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.36 E-value=3.6 Score=21.75 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=8.5
Q ss_pred CCCcEEecCCCcCcc
Q 044637 112 INLQTLEMPSSYIDH 126 (370)
Q Consensus 112 ~~L~~L~l~~~~~~~ 126 (370)
++|+.|++++|++..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.69 E-value=4.8 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=12.0
Q ss_pred CCCccEEEEecccccchhcHHHhh
Q 044637 180 LPNVQTLRISGDLSYYHSGVSKSL 203 (370)
Q Consensus 180 l~~L~~L~l~~~~~~~~~~~~~~l 203 (370)
+++|+.|++++|. ..+.-..++
T Consensus 1 ~~~L~~L~l~~n~--i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQ--ITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSB--EHHHHHHHH
T ss_pred CCCCCEEEccCCc--CCHHHHHHh
Confidence 4678888888875 555444444
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=64.07 E-value=0.077 Score=50.73 Aligned_cols=43 Identities=23% Similarity=0.012 Sum_probs=25.6
Q ss_pred eEeCCCCCCCcceEeecCCcccCCCch-----hcccCCCCcEEEecCCC
Q 044637 301 WTMGAGAMPKLESLILNPCAYLRKLPE-----ELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 301 i~~~~~~l~~L~~L~l~~c~~l~~l~~-----~~~~l~~L~~L~l~~~~ 344 (370)
++......+.++.+.+..+.....-+. .-.+. +++.+.++.++
T Consensus 396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 344456677788888777765442221 11234 77777777776
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.64 E-value=7.7 Score=20.75 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=7.0
Q ss_pred CCcEEeeCCCCCc
Q 044637 90 YLKYLKLNIPSLK 102 (370)
Q Consensus 90 ~L~~L~l~~~~~~ 102 (370)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.35 E-value=5 Score=38.51 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=19.5
Q ss_pred CCCCCceEEEEeccCCCC--CCcccccCCCCCCeEEeecc
Q 044637 232 KFPPSLTQLSLSNTELME--DPMPTLEELPHLEVLKLKQN 269 (370)
Q Consensus 232 ~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 269 (370)
++ +.+..+.+++|.+.. .........|+|+.|+|++|
T Consensus 216 n~-p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NF-PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CC-cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44 666666666665432 11112234566666666655
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.34 E-value=16 Score=35.22 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=33.8
Q ss_pred ccCCeeeEEEcCCCCcc---cCCcccCCcCCCcEEeeCCC--CCcccChhhhc--CCCCcEEecCCCc
Q 044637 63 KKFKHLRVLNLGSAVLD---QYPPGLENFFYLKYLKLNIP--SLKCLPSLLCT--LINLQTLEMPSSY 123 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~---~~~~~~~~l~~L~~L~l~~~--~~~~lp~~~~~--l~~L~~L~l~~~~ 123 (370)
.+++.+..+.|++|.+- .+..-....++|+.|+|++| .+...+ ++.+ ...|++|-+.+|.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCc
Confidence 35666777777777654 22222334567777777777 333222 3332 2346777777773
Done!