Query 044637
Match_columns 370
No_of_seqs 237 out of 3757
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:49:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4E-29 1.4E-33 251.6 13.1 296 65-369 393-765 (768)
2 3rgz_A Protein brassinosteroid 99.9 1.8E-27 6.1E-32 239.6 15.2 280 59-344 311-715 (768)
3 4eco_A Uncharacterized protein 99.9 2.1E-27 7.2E-32 234.1 15.2 275 58-342 198-545 (636)
4 2id5_A Lingo-1, leucine rich r 99.9 3.3E-26 1.1E-30 218.4 22.6 274 61-344 51-331 (477)
5 4ecn_A Leucine-rich repeat pro 99.9 7.7E-27 2.6E-31 234.9 17.7 275 58-342 440-785 (876)
6 4fmz_A Internalin; leucine ric 99.9 5.2E-26 1.8E-30 208.0 20.4 260 62-344 62-322 (347)
7 3v47_A TOLL-like receptor 5B a 99.9 2.1E-26 7.2E-31 218.3 18.1 279 59-344 47-406 (455)
8 3o6n_A APL1; leucine-rich repe 99.9 5.8E-26 2E-30 211.1 20.2 268 59-344 62-350 (390)
9 3o6n_A APL1; leucine-rich repe 99.9 3.9E-26 1.3E-30 212.2 18.2 268 64-344 43-329 (390)
10 4fcg_A Uncharacterized protein 99.9 1.7E-26 5.9E-31 209.4 13.7 233 64-344 79-312 (328)
11 4ecn_A Leucine-rich repeat pro 99.9 3.1E-26 1.1E-30 230.5 16.8 276 58-344 481-817 (876)
12 4fcg_A Uncharacterized protein 99.9 4.9E-26 1.7E-30 206.4 16.4 209 88-344 80-288 (328)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1E-25 3.5E-30 221.3 19.7 110 232-344 422-532 (606)
14 3oja_B Anopheles plasmodium-re 99.9 6.5E-26 2.2E-30 222.1 18.2 268 59-344 68-356 (597)
15 3t6q_A CD180 antigen; protein- 99.9 2.2E-25 7.4E-30 218.9 20.7 268 67-344 255-558 (606)
16 4eco_A Uncharacterized protein 99.9 4.7E-26 1.6E-30 224.5 15.9 262 66-344 305-598 (636)
17 3oja_B Anopheles plasmodium-re 99.9 2.1E-25 7.3E-30 218.4 19.9 269 64-344 49-335 (597)
18 1ogq_A PGIP-2, polygalacturona 99.9 9E-27 3.1E-31 210.0 8.9 242 66-344 50-302 (313)
19 3t6q_A CD180 antigen; protein- 99.9 1.2E-25 4.1E-30 220.7 16.1 258 60-325 272-563 (606)
20 1o6v_A Internalin A; bacterial 99.9 9.2E-25 3.1E-29 207.7 21.2 264 62-344 64-364 (466)
21 4fmz_A Internalin; leucine ric 99.9 4.6E-25 1.6E-29 201.7 18.3 259 62-344 84-344 (347)
22 3v47_A TOLL-like receptor 5B a 99.9 1.2E-25 4E-30 213.2 14.8 272 66-344 30-382 (455)
23 2z63_A TOLL-like receptor 4, v 99.9 5.8E-25 2E-29 214.2 19.5 111 231-344 418-529 (570)
24 1xku_A Decorin; proteoglycan, 99.9 1.6E-24 5.3E-29 196.8 20.3 262 67-344 32-304 (330)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-24 5.3E-29 211.0 19.8 103 235-344 403-508 (562)
26 2z7x_B TOLL-like receptor 1, v 99.9 1E-24 3.5E-29 210.3 17.1 86 59-147 38-126 (520)
27 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-24 1.1E-28 203.0 19.9 253 62-344 60-350 (457)
28 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-24 6.2E-29 209.8 18.2 277 60-344 44-421 (549)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-23 5.4E-28 198.2 23.1 238 62-322 81-352 (457)
30 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-24 7.2E-29 208.1 17.4 269 59-344 62-479 (520)
31 2ft3_A Biglycan; proteoglycan, 99.9 3.4E-24 1.2E-28 194.7 17.1 262 67-344 34-305 (332)
32 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-24 6.6E-29 209.7 16.1 279 59-344 67-462 (549)
33 1o6v_A Internalin A; bacterial 99.9 9.4E-24 3.2E-28 200.7 20.5 263 62-344 86-386 (466)
34 1ziw_A TOLL-like receptor 3; i 99.9 4.3E-24 1.5E-28 212.5 17.5 280 60-344 43-364 (680)
35 2id5_A Lingo-1, leucine rich r 99.9 2.4E-23 8.2E-28 198.5 21.8 269 65-344 31-307 (477)
36 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-23 3.8E-28 214.1 20.6 273 66-344 24-373 (844)
37 2ft3_A Biglycan; proteoglycan, 99.9 3E-24 1E-28 195.2 14.0 262 65-344 53-331 (332)
38 1xku_A Decorin; proteoglycan, 99.9 4.6E-24 1.6E-28 193.7 14.9 261 66-343 52-329 (330)
39 2z63_A TOLL-like receptor 4, v 99.9 9.3E-24 3.2E-28 205.7 17.7 279 60-344 46-456 (570)
40 3vq2_A TLR4, TOLL-like recepto 99.9 9.1E-25 3.1E-29 214.5 10.3 266 62-344 281-556 (606)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-23 4.1E-28 204.6 18.1 110 231-344 350-484 (562)
42 3j0a_A TOLL-like receptor 5; m 99.9 2E-23 6.8E-28 212.3 17.6 272 61-344 43-392 (844)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4.1E-29 196.1 6.6 230 57-323 67-305 (313)
44 2z66_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 189.2 12.5 240 69-321 10-260 (306)
45 2z80_A TOLL-like receptor 2, v 99.9 3.2E-23 1.1E-27 189.9 14.7 246 66-344 52-312 (353)
46 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-22 8.1E-27 199.9 21.8 269 68-343 250-594 (680)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-22 5.3E-27 199.3 20.3 124 67-191 53-183 (635)
48 2z66_A Variable lymphocyte rec 99.9 8.9E-23 3E-27 183.2 12.5 222 65-296 27-259 (306)
49 1jl5_A Outer protein YOPM; leu 99.9 1.7E-21 5.7E-26 184.1 19.8 253 66-344 111-407 (454)
50 3zyi_A Leucine-rich repeat-con 99.9 1.7E-21 5.9E-26 184.4 18.3 240 68-344 56-301 (452)
51 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-23 9.8E-28 187.4 4.7 243 57-343 25-272 (317)
52 3zyj_A Leucine-rich repeat-con 99.9 3.3E-21 1.1E-25 181.8 18.9 239 68-344 45-290 (440)
53 1ozn_A Reticulon 4 receptor; N 99.9 3E-22 1E-26 177.9 10.4 215 69-295 14-235 (285)
54 1wwl_A Monocyte differentiatio 99.9 1.5E-23 5E-28 188.9 1.9 244 63-344 40-307 (312)
55 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-21 6E-26 191.8 16.6 111 59-170 69-184 (635)
56 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-20 4.5E-25 183.7 22.3 243 66-344 40-295 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-22 1.8E-26 179.0 10.4 235 66-344 10-248 (317)
58 3zyj_A Leucine-rich repeat-con 99.9 3.5E-21 1.2E-25 181.7 14.9 220 66-321 64-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 3.6E-21 1.2E-25 182.2 14.5 220 66-321 75-302 (452)
60 1jl5_A Outer protein YOPM; leu 99.9 4E-20 1.4E-24 174.7 21.0 250 65-344 90-368 (454)
61 3oja_A Leucine-rich immune mol 99.9 4.2E-22 1.4E-26 190.0 7.5 235 63-317 31-270 (487)
62 2z80_A TOLL-like receptor 2, v 99.9 4.6E-21 1.6E-25 175.6 13.6 232 60-325 70-317 (353)
63 1ozn_A Reticulon 4 receptor; N 99.8 7E-21 2.4E-25 169.1 11.9 201 65-273 31-239 (285)
64 3oja_A Leucine-rich immune mol 99.8 7.7E-21 2.6E-25 181.3 11.9 235 86-341 31-270 (487)
65 3ogk_B Coronatine-insensitive 99.8 4.3E-21 1.5E-25 187.7 6.6 282 57-344 155-524 (592)
66 1wwl_A Monocyte differentiatio 99.8 9.4E-21 3.2E-25 170.5 8.0 218 68-322 65-309 (312)
67 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.9E-24 175.8 15.2 232 66-330 61-305 (622)
68 3ogk_B Coronatine-insensitive 99.8 9.5E-21 3.3E-25 185.3 5.5 282 58-343 184-548 (592)
69 1h6u_A Internalin H; cell adhe 99.8 2.9E-19 1E-23 160.3 14.1 193 63-273 38-231 (308)
70 2z62_A TOLL-like receptor 4, v 99.8 9.5E-19 3.3E-23 154.5 16.6 215 71-322 12-237 (276)
71 2z62_A TOLL-like receptor 4, v 99.8 7.1E-19 2.4E-23 155.3 15.4 198 66-271 28-236 (276)
72 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-22 6.5E-27 191.4 -8.2 108 235-344 284-409 (461)
73 1z7x_W Ribonuclease inhibitor; 99.8 3.5E-22 1.2E-26 189.6 -6.5 281 59-344 49-381 (461)
74 3rfs_A Internalin B, repeat mo 99.8 3.2E-19 1.1E-23 157.2 12.9 205 88-334 40-247 (272)
75 1p9a_G Platelet glycoprotein I 99.8 2.5E-18 8.7E-23 152.8 15.4 127 62-192 6-135 (290)
76 2ast_B S-phase kinase-associat 99.8 1.2E-20 4E-25 171.5 -0.5 255 66-330 47-314 (336)
77 2ast_B S-phase kinase-associat 99.8 3.3E-20 1.1E-24 168.6 2.4 230 59-301 61-308 (336)
78 2o6q_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 148.9 16.7 195 67-296 17-216 (270)
79 3rfs_A Internalin B, repeat mo 99.8 1.8E-18 6.2E-23 152.4 13.3 207 63-311 38-248 (272)
80 1p9a_G Platelet glycoprotein I 99.8 3.1E-18 1.1E-22 152.3 13.9 200 85-321 6-207 (290)
81 1h6u_A Internalin H; cell adhe 99.8 4.4E-18 1.5E-22 152.7 14.8 201 72-294 25-226 (308)
82 2o6q_A Variable lymphocyte rec 99.8 1E-17 3.6E-22 147.4 15.1 198 89-322 16-218 (270)
83 2ca6_A RAN GTPase-activating p 99.7 1.8E-20 6.2E-25 173.7 -4.2 264 56-343 22-340 (386)
84 2p1m_B Transport inhibitor res 99.7 3.9E-19 1.3E-23 173.9 4.6 280 58-344 148-517 (594)
85 2xwt_C Thyrotropin receptor; s 99.7 4.5E-18 1.5E-22 146.9 10.1 194 90-320 32-237 (239)
86 2ca6_A RAN GTPase-activating p 99.7 9.6E-20 3.3E-24 168.8 -0.6 229 58-319 52-340 (386)
87 2xwt_C Thyrotropin receptor; s 99.7 1.4E-17 4.6E-22 143.9 11.1 206 100-344 22-237 (239)
88 4ay9_X Follicle-stimulating ho 99.7 2.6E-17 8.8E-22 150.4 12.8 121 69-191 12-138 (350)
89 3goz_A Leucine-rich repeat-con 99.7 1.6E-18 5.4E-23 159.2 2.0 135 57-192 13-178 (362)
90 4glp_A Monocyte differentiatio 99.7 3.1E-17 1.1E-21 147.3 10.3 79 89-168 91-178 (310)
91 3goz_A Leucine-rich repeat-con 99.7 1.8E-18 6E-23 158.9 2.0 248 70-323 2-298 (362)
92 2p1m_B Transport inhibitor res 99.7 2.4E-19 8.2E-24 175.4 -5.2 275 64-344 128-492 (594)
93 1h6t_A Internalin B; cell adhe 99.7 2.4E-16 8.1E-21 140.1 13.6 171 63-273 43-214 (291)
94 3m19_A Variable lymphocyte rec 99.7 8.3E-16 2.8E-20 133.7 15.7 174 66-272 14-192 (251)
95 4glp_A Monocyte differentiatio 99.7 6.2E-17 2.1E-21 145.3 8.3 218 90-344 65-305 (310)
96 4ay9_X Follicle-stimulating ho 99.7 7.7E-16 2.6E-20 140.6 14.4 77 67-143 31-112 (350)
97 1m9s_A Internalin B; cell inva 99.7 8.2E-16 2.8E-20 149.7 13.7 170 87-273 41-211 (605)
98 1m9s_A Internalin B; cell inva 99.6 2.7E-16 9.3E-21 153.1 9.1 188 88-296 20-208 (605)
99 2o6s_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 128.5 11.1 175 69-259 10-189 (208)
100 1xeu_A Internalin C; cellular 99.6 8.5E-16 2.9E-20 134.5 9.2 170 64-274 17-187 (263)
101 3cvr_A Invasion plasmid antige 99.6 2.9E-15 1E-19 144.4 13.7 179 66-274 59-245 (571)
102 3m19_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 127.6 14.0 176 112-323 14-193 (251)
103 3cvr_A Invasion plasmid antige 99.6 2E-15 7E-20 145.5 10.4 188 89-333 59-254 (571)
104 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.9E-19 129.3 13.9 145 62-216 64-209 (291)
105 4ezg_A Putative uncharacterize 99.6 4.7E-15 1.6E-19 124.0 10.5 151 86-272 41-194 (197)
106 4ezg_A Putative uncharacterize 99.6 1.7E-15 5.7E-20 126.7 6.6 146 63-216 41-190 (197)
107 1xeu_A Internalin C; cellular 99.6 1.5E-14 5.2E-19 126.5 11.1 144 62-216 37-181 (263)
108 2o6s_A Variable lymphocyte rec 99.5 2.8E-14 9.5E-19 120.3 11.2 98 91-191 9-110 (208)
109 2ell_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 118.3 7.6 128 63-192 21-158 (168)
110 2v9t_B SLIT homolog 2 protein 99.5 8.4E-14 2.9E-18 118.4 12.2 119 70-191 15-138 (220)
111 3e6j_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 118.6 12.3 119 70-191 23-145 (229)
112 1dce_A Protein (RAB geranylger 99.5 7.3E-17 2.5E-21 156.1 -8.5 175 86-271 346-545 (567)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 8.9E-14 3E-18 118.2 11.6 142 69-215 14-161 (220)
114 4b8c_D Glucose-repressible alc 99.5 6.6E-15 2.3E-19 146.7 5.1 124 79-205 214-338 (727)
115 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.3E-19 114.6 6.3 103 63-167 14-121 (149)
116 2xot_A Amphoterin-induced prot 99.5 7.5E-14 2.6E-18 127.9 10.2 173 69-271 21-201 (361)
117 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 116.8 11.9 127 65-192 39-170 (229)
118 2v9t_B SLIT homolog 2 protein 99.5 4.3E-13 1.5E-17 114.0 12.2 126 66-192 32-163 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.5 5E-13 1.7E-17 113.5 11.8 126 66-192 32-164 (220)
120 1a9n_A U2A', U2A'; complex (nu 99.4 5.6E-14 1.9E-18 115.1 5.7 128 62-192 15-151 (176)
121 1ds9_A Outer arm dynein; leuci 99.4 6E-15 2.1E-19 123.4 -4.2 147 62-213 14-180 (198)
122 2ell_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 108.7 7.2 117 57-175 40-164 (168)
123 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4E-17 120.0 10.3 148 66-216 39-198 (361)
124 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.8E-17 107.8 10.3 121 69-192 11-137 (192)
125 2wfh_A SLIT homolog 2 protein 99.4 4.4E-12 1.5E-16 105.4 12.5 121 69-192 13-137 (193)
126 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.9E-17 126.8 10.2 151 59-214 402-567 (567)
127 2je0_A Acidic leucine-rich nuc 99.4 3.4E-13 1.2E-17 107.2 4.7 125 87-215 15-148 (149)
128 4b8c_D Glucose-repressible alc 99.3 1.8E-12 6.1E-17 129.2 9.8 111 59-170 217-327 (727)
129 1a9n_A U2A', U2A'; complex (nu 99.3 2.4E-12 8.3E-17 105.3 6.1 127 84-216 14-149 (176)
130 3sb4_A Hypothetical leucine ri 99.3 3.8E-11 1.3E-15 108.4 12.9 255 65-340 48-328 (329)
131 1ds9_A Outer arm dynein; leuci 99.3 5.3E-14 1.8E-18 117.6 -6.0 128 57-187 39-180 (198)
132 2o6r_A Variable lymphocyte rec 99.2 9.7E-11 3.3E-15 95.7 12.8 122 68-192 9-135 (177)
133 2wfh_A SLIT homolog 2 protein 99.2 5E-11 1.7E-15 99.0 10.3 104 66-170 31-137 (193)
134 1w8a_A SLIT protein; signaling 99.2 2.9E-11 9.9E-16 100.3 8.5 120 92-216 11-135 (192)
135 2r9u_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 95.0 11.1 99 69-170 15-116 (174)
136 3g39_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 94.1 10.2 100 68-170 11-113 (170)
137 2o6r_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 93.1 10.5 105 65-170 27-135 (177)
138 4fdw_A Leucine rich hypothetic 99.1 7.2E-09 2.5E-13 95.8 19.3 258 65-344 112-381 (401)
139 4fdw_A Leucine rich hypothetic 99.0 2E-08 6.9E-13 92.8 16.4 244 60-320 130-381 (401)
140 2r9u_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 86.4 9.3 99 91-192 14-116 (174)
141 3g39_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 85.2 9.3 100 90-192 10-113 (170)
142 3sb4_A Hypothetical leucine ri 98.8 1.4E-08 4.8E-13 91.5 10.8 214 88-316 100-328 (329)
143 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.6E-13 92.2 9.7 82 62-143 27-111 (347)
144 3un9_A NLR family member X1; l 98.8 3.5E-10 1.2E-14 103.6 -2.3 126 65-191 71-221 (372)
145 4fs7_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 83.9 15.0 267 59-343 64-376 (394)
146 4fs7_A Uncharacterized protein 98.6 9.3E-07 3.2E-11 81.6 16.4 244 83-343 65-353 (394)
147 2ifg_A High affinity nerve gro 98.6 5.5E-08 1.9E-12 88.1 7.3 100 69-170 11-114 (347)
148 3un9_A NLR family member X1; l 98.6 7.2E-09 2.5E-13 94.9 0.0 140 64-206 99-262 (372)
149 4gt6_A Cell surface protein; l 98.5 4.1E-06 1.4E-10 77.2 17.8 270 60-344 57-368 (394)
150 2ra8_A Uncharacterized protein 98.5 1.3E-08 4.4E-13 92.6 0.3 138 199-344 164-318 (362)
151 2ra8_A Uncharacterized protein 98.4 9.2E-08 3.1E-12 87.0 3.8 83 257-344 250-341 (362)
152 3e4g_A ATP synthase subunit S, 98.4 6.9E-08 2.4E-12 77.6 2.3 88 235-324 61-154 (176)
153 1io0_A Tropomodulin; LRR prote 98.3 2.8E-07 9.6E-12 75.6 3.1 118 57-192 27-162 (185)
154 3e4g_A ATP synthase subunit S, 98.1 7.3E-07 2.5E-11 71.7 1.5 84 259-344 61-150 (176)
155 4h09_A Hypothetical leucine ri 98.1 0.00014 4.9E-09 66.3 16.6 100 235-341 240-341 (379)
156 3rw6_A Nuclear RNA export fact 98.1 5.8E-06 2E-10 71.4 6.4 59 64-123 168-231 (267)
157 4gt6_A Cell surface protein; l 98.0 6.7E-05 2.3E-09 69.0 13.1 266 59-343 80-388 (394)
158 1io0_A Tropomodulin; LRR prote 97.9 1.2E-05 4.1E-10 65.7 5.0 91 56-147 55-162 (185)
159 3rw6_A Nuclear RNA export fact 97.7 3.8E-05 1.3E-09 66.3 5.4 77 87-165 168-257 (267)
160 4h09_A Hypothetical leucine ri 97.5 0.0071 2.4E-07 54.9 17.5 262 61-342 41-319 (379)
161 3rfe_A Platelet glycoprotein I 96.2 0.01 3.5E-07 45.0 6.1 53 69-123 11-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.4 0.014 4.7E-07 47.6 4.4 86 58-143 33-134 (197)
163 3rfe_A Platelet glycoprotein I 94.6 0.044 1.5E-06 41.4 4.9 52 92-146 11-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.1 0.053 1.8E-06 44.1 4.7 87 57-143 61-165 (197)
165 2a5y_B CED-4; apoptosis; HET: 71.2 1.7 5.7E-05 41.4 2.1 19 8-27 450-468 (549)
166 3sfz_A APAF-1, apoptotic pepti 29.7 23 0.00079 36.9 2.4 22 5-27 428-449 (1249)
167 1z6t_A APAF-1, apoptotic prote 22.7 39 0.0013 32.0 2.4 20 6-26 429-448 (591)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4e-29 Score=251.64 Aligned_cols=296 Identities=20% Similarity=0.187 Sum_probs=200.3
Q ss_pred CCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCc-ccChhhhcCCCCcEEecCCCcCc-cccHHHhccccCcEEE
Q 044637 65 FKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLK-CLPSLLCTLINLQTLEMPSSYID-HSPEDIWMMLKLMHLN 141 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~ 141 (370)
++.|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 556777777777766 66677777777777777777776 66777777777777777777543 6677777777777777
Q ss_pred ccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec--
Q 044637 142 FGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN-- 216 (370)
Q Consensus 142 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-- 216 (370)
++ +|. .+.+|..++++++|++|++.++. ...|..++.+++|+.|++++|. ..+.+|..++.+++|+.|++++
T Consensus 473 L~-~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 473 LD-FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--FSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CC-SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGGCTTCCEEECCSSE
T ss_pred ec-CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCCCEEECCCCc
Confidence 77 555 44667777777777777777666 4667777777778888887775 6667777777777888877765
Q ss_pred -CCCcc----c---cce---------------------------------------------------EEE------ecC
Q 044637 217 -EGNMR----Q---LSR---------------------------------------------------MIL------SEY 231 (370)
Q Consensus 217 -~~~~~----~---L~~---------------------------------------------------L~l------~~~ 231 (370)
.+... . +.. -.+ .+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 11100 0 000 000 233
Q ss_pred CCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCc
Q 044637 232 KFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKL 311 (370)
Q Consensus 232 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L 311 (370)
.+ ++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.. +.. ++.+++|+.|+|+++.--..+|..++.+++|
T Consensus 630 ~l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~-l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 630 NN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDE-VGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SS-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGG-GGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred cc-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChH-HhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 45 67888999999888888888999999999999988888765 444 7788899999999865333788888889999
Q ss_pred ceEeecCCcccCCCchhcccCCCCcEEEecCCC----HHHHHhhccccCCccccceecccCC
Q 044637 312 ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ----PELRQRLRAFEDMEWRYGIQLYPSG 369 (370)
Q Consensus 312 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~----~~l~~~~~~~~~~~~~~~i~~i~~i 369 (370)
+.|++++|...+.+|.. +.+.++....+.||+ .-+. .|.. ..+++|++|+|+|.+
T Consensus 707 ~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~-~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDP-SNADGYAHHQRSHHH 765 (768)
T ss_dssp SEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCS-CC-------------
T ss_pred CEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCC-CccCCCCCCCCcccc
Confidence 99999999888788864 335555555555554 1122 5666 889999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.8e-27 Score=239.65 Aligned_cols=280 Identities=19% Similarity=0.181 Sum_probs=140.6
Q ss_pred HHHhccCCeeeEEEcCCCCcc-cCCcc-cCCcCCCcEEeeCCCCCc-ccChhhhcCC-----------------------
Q 044637 59 ENFCKKFKHLRVLNLGSAVLD-QYPPG-LENFFYLKYLKLNIPSLK-CLPSLLCTLI----------------------- 112 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~-~~~~~-~~~l~~L~~L~l~~~~~~-~lp~~~~~l~----------------------- 112 (370)
+..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+. .+|..++.++
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 334455555555555555554 44443 555555555555555544 4444444433
Q ss_pred ----CCcEEecCCCcCc-cccHHHhccccCcEEEccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCcc
Q 044637 113 ----NLQTLEMPSSYID-HSPEDIWMMLKLMHLNFGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQ 184 (370)
Q Consensus 113 ----~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~ 184 (370)
+|++|++++|.+. .+|..++++++|++|+++ +|. .+.+|..++++++|++|++.++. ...|..+..+++|+
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC-SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECc-CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 3444444444222 344555555555555555 433 33445555555555555555554 34555555555555
Q ss_pred EEEEecccccchhcHHHhhhccCCCCEEEEec---CCCcc-------ccceEEE-----------ecCCCCCCceEEEEe
Q 044637 185 TLRISGDLSYYHSGVSKSLCQLHKLECLKLVN---EGNMR-------QLSRMIL-----------SEYKFPPSLTQLSLS 243 (370)
Q Consensus 185 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~---~~~~~-------~L~~L~l-----------~~~~~p~~L~~L~l~ 243 (370)
.|++++|. ..+.+|..+..+++|+.|++++ .+... +|+.|.+ .+..+ ++|++|+++
T Consensus 470 ~L~L~~N~--l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls 546 (768)
T 3rgz_A 470 TLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLN 546 (768)
T ss_dssp EEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECC
T ss_pred EEEecCCc--ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECC
Confidence 55555553 4445555555555566555554 11000 2222222 23334 445555555
Q ss_pred ccCCCCCCccc---------------------------------------------------------------------
Q 044637 244 NTELMEDPMPT--------------------------------------------------------------------- 254 (370)
Q Consensus 244 ~~~~~~~~~~~--------------------------------------------------------------------- 254 (370)
+|.+.+..|..
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 44433222221
Q ss_pred -ccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCC
Q 044637 255 -LEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIK 333 (370)
Q Consensus 255 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 333 (370)
++.+++|+.|++++|.+++.. +.. ++.+++|+.|+++++.--..+|..++.+++|+.|++++|...+.+|..+..++
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~i-p~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYI-PKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCC-CGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred hhhccccccEEECcCCcccccC-CHH-HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 122344555555555554433 233 45555666666665432225555566666666666666665556666666666
Q ss_pred CCcEEEecCCC
Q 044637 334 SLCKLELHWPQ 344 (370)
Q Consensus 334 ~L~~L~l~~~~ 344 (370)
+|++|++++|+
T Consensus 705 ~L~~L~ls~N~ 715 (768)
T 3rgz_A 705 MLTEIDLSNNN 715 (768)
T ss_dssp CCSEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 66666666663
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.1e-27 Score=234.07 Aligned_cols=275 Identities=15% Similarity=0.166 Sum_probs=201.5
Q ss_pred hHHHhccCCeeeEEEcCCCCccc------------------CCcccC--CcCCCcEEeeCCCCCc-ccChhhhcCCCCcE
Q 044637 58 CENFCKKFKHLRVLNLGSAVLDQ------------------YPPGLE--NFFYLKYLKLNIPSLK-CLPSLLCTLINLQT 116 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 116 (370)
++..+.++++|++|+|++|.++. +|+.++ .+++|++|++++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56678999999999999999996 999999 9999999999999977 88999999999999
Q ss_pred EecCCCc-Cc--cccHHHhcc------ccCcEEEccCCcCCCCCCC--CCCCCCCCceeccccCC-C-CCccccCCCCCc
Q 044637 117 LEMPSSY-ID--HSPEDIWMM------LKLMHLNFGSITLPAPPKN--NSSTLKNLIFISALHPG-S-CTPDILGRLPNV 183 (370)
Q Consensus 117 L~l~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L 183 (370)
|++++|. +. .+|..++++ ++|++|+++ +|....+|. .++++++|++|++.++. . .+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~-~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG-YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC-SSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECC-CCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999996 76 599999887 999999999 777668998 89999999999988887 3 777 88889999
Q ss_pred cEEEEecccccchhcHHHhhhccCC-CCEEEEecCC--C---cc------ccceEEE-----------ecC-------CC
Q 044637 184 QTLRISGDLSYYHSGVSKSLCQLHK-LECLKLVNEG--N---MR------QLSRMIL-----------SEY-------KF 233 (370)
Q Consensus 184 ~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~--~---~~------~L~~L~l-----------~~~-------~~ 233 (370)
+.|+++++. ...+|..+..+++ |+.|++++.. . .+ +|+.|.+ ++. .+
T Consensus 356 ~~L~L~~N~---l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 356 ASLNLAYNQ---ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp SEEECCSSE---EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CEEECCCCc---cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999984 3488888999998 9999998711 0 00 3556655 122 33
Q ss_pred CCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCC-------CCccccEEEecCCCCCceeEeCCC
Q 044637 234 PPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCS-------SFPQLKILHLKSMLWLEEWTMGAG 306 (370)
Q Consensus 234 p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~i~~~~~ 306 (370)
++|++|++++|.+....+..+..+++|+.|++++|.+.. . +...+. .+++|+.|++++| .++.+|..+.
T Consensus 433 -~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i-~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 508 (636)
T 4eco_A 433 -INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-I-PKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR 508 (636)
T ss_dssp -CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-C-CSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred -CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-c-CHHHhccccccccccCCccEEECcCC-cCCccChhhh
Confidence 477888888887654333334557777777777776652 1 111011 1125666666663 3555555544
Q ss_pred --CCCCcceEeecCCcccCCCchhcccCCCCcEEEecC
Q 044637 307 --AMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 342 (370)
Q Consensus 307 --~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 342 (370)
.+++|+.|++++|.... +|..+..+++|++|++++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 56666666666665433 555555566666666543
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.3e-26 Score=218.35 Aligned_cols=274 Identities=20% Similarity=0.163 Sum_probs=162.8
Q ss_pred HhccCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCccc-cHHHhccccC
Q 044637 61 FCKKFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDHS-PEDIWMMLKL 137 (370)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L 137 (370)
.|..+++|++|+|++|.++ ..|..+..+++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 3445555555555555555 2244455555555555555555544432 44555555555555544333 2334455555
Q ss_pred cEEEccCCcC-CCCCCCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEE
Q 044637 138 MHLNFGSITL-PAPPKNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL 214 (370)
Q Consensus 138 ~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 214 (370)
++|+++ ++. ....+..+.++++|++|++.++. ..++ ..+..+++|+.|++.++. .....+..+..+++|+.|++
T Consensus 131 ~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 131 KSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp CEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEE
T ss_pred CEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc--CcEeChhhcccCcccceeeC
Confidence 555555 333 22223344555555555554444 2222 234555555555555553 22222334455555555555
Q ss_pred ecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecC
Q 044637 215 VNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKS 294 (370)
Q Consensus 215 ~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 294 (370)
++.. .+..+.-..... .+|++|++++|.+....+..++.+++|+.|++++|.+.+.. ... +..+++|+.|++++
T Consensus 208 ~~~~---~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 208 SHWP---YLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSM-LHELLRLQEIQLVG 281 (477)
T ss_dssp ECCT---TCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTS-CTTCTTCCEEECCS
T ss_pred CCCc---cccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhh-ccccccCCEEECCC
Confidence 5411 011110012233 58999999999987655567899999999999999876432 223 67889999999999
Q ss_pred CCCCcee-EeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 295 MLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 295 ~~~l~~i-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+ .+..+ +..+..+++|+.|++++|......+..+..+++|++|++.+|+
T Consensus 282 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 282 G-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp S-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred C-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 5 57766 4567899999999999997554344567889999999999875
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=7.7e-27 Score=234.92 Aligned_cols=275 Identities=13% Similarity=0.158 Sum_probs=183.3
Q ss_pred hHHHhccCCeeeEEEcCCCCccc------------------CCcccC--CcCCCcEEeeCCCCCc-ccChhhhcCCCCcE
Q 044637 58 CENFCKKFKHLRVLNLGSAVLDQ------------------YPPGLE--NFFYLKYLKLNIPSLK-CLPSLLCTLINLQT 116 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 116 (370)
++..+.++++|++|+|++|.++. +|+.++ .+++|++|++++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56678899999999999999886 899988 9999999999999866 88999999999999
Q ss_pred EecCCCc-Cc--cccHHHhccc-------cCcEEEccCCcCCCCCCC--CCCCCCCCceeccccCC-CCCccccCCCCCc
Q 044637 117 LEMPSSY-ID--HSPEDIWMML-------KLMHLNFGSITLPAPPKN--NSSTLKNLIFISALHPG-SCTPDILGRLPNV 183 (370)
Q Consensus 117 L~l~~~~-~~--~lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L 183 (370)
|++++|. +. .+|..+++++ +|++|+++ +|....+|. .++++++|+.|++.++. ..+| .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls-~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG-YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC-SSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEee-CCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9999996 76 4888888877 99999999 777668888 89999999999988887 7666 78889999
Q ss_pred cEEEEecccccchhcHHHhhhccCC-CCEEEEecCC-----Ccc------ccceEEE---ec----CCCC--------CC
Q 044637 184 QTLRISGDLSYYHSGVSKSLCQLHK-LECLKLVNEG-----NMR------QLSRMIL---SE----YKFP--------PS 236 (370)
Q Consensus 184 ~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~-----~~~------~L~~L~l---~~----~~~p--------~~ 236 (370)
+.|++++|. .. .+|..+..+++ |+.|++++.. ..+ +|+.|.+ .+ ..+| ++
T Consensus 598 ~~L~Ls~N~--l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 598 TDLKLDYNQ--IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp SEEECCSSC--CS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred eEEECcCCc--cc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999984 33 78888888888 9999888711 000 2555555 11 1110 25
Q ss_pred ceEEEEeccCCCCCCccc-ccCCCCCCeEEeecccccCceeEEecCC-------CCccccEEEecCCCCCceeEeCCC--
Q 044637 237 LTQLSLSNTELMEDPMPT-LEELPHLEVLKLKQNSYLERKLVCVGCS-------SFPQLKILHLKSMLWLEEWTMGAG-- 306 (370)
Q Consensus 237 L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~i~~~~~-- 306 (370)
|+.|++++|.+.. .|.. +..+++|+.|++++|.+.. ++...+. .+++|+.|+|++| .+..+|..+.
T Consensus 675 L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~ 750 (876)
T 4ecn_A 675 ASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRAT 750 (876)
T ss_dssp EEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTT
T ss_pred cCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccEEECCCC-CCccchHHhhhc
Confidence 6666666666542 3332 2355556666655555441 1111011 1124555555443 3444444333
Q ss_pred CCCCcceEeecCCcccCCCchhcccCCCCcEEEecC
Q 044637 307 AMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 342 (370)
Q Consensus 307 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 342 (370)
.+++|+.|++++|.... +|..+..+++|+.|++++
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 44444444444444222 444444444444444433
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=5.2e-26 Score=207.97 Aligned_cols=260 Identities=18% Similarity=0.247 Sum_probs=165.3
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+++|++|++++|.+..++. +..+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 4566777777777776665554 666777777777777666654 46667777777777776666654 66677777777
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCc
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNM 220 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 220 (370)
++ +|.....+..+..+++|++|++.++. ...+. +..+++|+.|+++++. ...++. +..+++|+.|++++..
T Consensus 139 l~-~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~---l~~~~~-~~~l~~L~~L~l~~n~-- 210 (347)
T 4fmz_A 139 LG-ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ---IEDISP-LASLTSLHYFTAYVNQ-- 210 (347)
T ss_dssp CT-TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC---CCCCGG-GGGCTTCCEEECCSSC--
T ss_pred CC-CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc---cccccc-ccCCCccceeecccCC--
Confidence 77 55422223336667777777766655 33332 5666777777777663 222222 5566667777666511
Q ss_pred cccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCce
Q 044637 221 RQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEE 300 (370)
Q Consensus 221 ~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 300 (370)
+..+. .+..+ ++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+. .. +..+++|++|++++| .++.
T Consensus 211 --l~~~~-~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n-~l~~ 279 (347)
T 4fmz_A 211 --ITDIT-PVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---NA-VKDLTKLKMLNVGSN-QISD 279 (347)
T ss_dssp --CCCCG-GGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCC
T ss_pred --CCCCc-hhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---hh-HhcCCCcCEEEccCC-ccCC
Confidence 01000 24455 777888888777654332 67777888888877776553 12 567777888888775 4666
Q ss_pred eEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 301 WTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 301 i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++ .+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 53 36677778888888777655566667777778888877775
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.1e-26 Score=218.34 Aligned_cols=279 Identities=19% Similarity=0.178 Sum_probs=205.4
Q ss_pred HHHhccCCeeeEEEcCCCCcc-cC-CcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCcc-ccHH--Hh
Q 044637 59 ENFCKKFKHLRVLNLGSAVLD-QY-PPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDH-SPED--IW 132 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~-~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~-lp~~--i~ 132 (370)
+..|.++++|++|++++|.+. .+ +..+..+++|++|++++|.+..+ |..++++++|++|++++|.+.. +|.. ++
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 455788888999999888875 44 45688888899999998888855 7778888899999998886654 3433 77
Q ss_pred ccccCcEEEccCCcCCCCC-CCC-CCCCCCCceeccccCC--CCCcccc-------------------------------
Q 044637 133 MMLKLMHLNFGSITLPAPP-KNN-SSTLKNLIFISALHPG--SCTPDIL------------------------------- 177 (370)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~~-~~~-l~~l~~L~~L~l~~~~--~~~~~~l------------------------------- 177 (370)
.+++|++|+++ ++....+ |.. +.++++|++|++.++. ...+..+
T Consensus 127 ~l~~L~~L~L~-~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 127 PLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TCTTCCEEECC-SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred CcccCCEEECC-CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 88888999988 6664444 544 6788888888877766 2222222
Q ss_pred ---CCCCCccEEEEecccccchhcHHHhhhcc---CCCCEEEEecC---CCc-------------------cccceEEE-
Q 044637 178 ---GRLPNVQTLRISGDLSYYHSGVSKSLCQL---HKLECLKLVNE---GNM-------------------RQLSRMIL- 228 (370)
Q Consensus 178 ---~~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~---~~~-------------------~~L~~L~l- 228 (370)
..+++|+.|+++++. ..+..+..+... ++|+.|++++. +.. .+++.+.+
T Consensus 206 ~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp CCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred ccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 234678888888885 555666655544 55666665531 000 03555554
Q ss_pred ----------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 229 ----------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 229 ----------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
++..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +.. +..+++|++|++++| .+
T Consensus 284 ~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~N-~l 359 (455)
T 3v47_A 284 KSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRM-FENLDKLEVLDLSYN-HI 359 (455)
T ss_dssp SSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGG-GTTCTTCCEEECCSS-CC
T ss_pred CccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhH-hcCcccCCEEECCCC-cc
Confidence 45677 89999999999988877888999999999999999885432 333 678999999999995 57
Q ss_pred cee-EeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 299 EEW-TMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 299 ~~i-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+.+ |..+..+++|+.|++++|......+..+..+++|++|++++|+
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 766 5678899999999999998554334456889999999999865
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-26 Score=211.08 Aligned_cols=268 Identities=19% Similarity=0.223 Sum_probs=190.2
Q ss_pred HHHhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHHH-hccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPEDI-WMML 135 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~ 135 (370)
+.++..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++ ..++++++|++|++++|.+..+|..+ +.++
T Consensus 62 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 141 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141 (390)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCC
Confidence 455788899999999999888444 47888899999999999888664 45788999999999999888888664 7889
Q ss_pred cCcEEEccCCcCCCCC-CCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEE
Q 044637 136 KLMHLNFGSITLPAPP-KNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK 213 (370)
Q Consensus 136 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 213 (370)
+|++|+++ ++....+ +..+..+++|++|++.++. ... .+..+++|+.|+++++. ... +...++|+.|+
T Consensus 142 ~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~---l~~----~~~~~~L~~L~ 211 (390)
T 3o6n_A 142 KLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL---LST----LAIPIAVEELD 211 (390)
T ss_dssp TCCEEECC-SSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC---CSE----EECCSSCSEEE
T ss_pred CCcEEECC-CCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc---ccc----cCCCCcceEEE
Confidence 99999998 6664444 4567888999999877776 333 24567778888777763 111 12334566666
Q ss_pred EecCC------Cc-cccceEEE---------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeE
Q 044637 214 LVNEG------NM-RQLSRMIL---------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLV 277 (370)
Q Consensus 214 l~~~~------~~-~~L~~L~l---------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 277 (370)
+++.. .. .+++.|.+ ++..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+ ++
T Consensus 212 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~ 288 (390)
T 3o6n_A 212 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LN 288 (390)
T ss_dssp CCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EE
T ss_pred CCCCeeeeccccccccccEEECCCCCCcccHHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cC
Confidence 65411 00 03444443 45566 778888888887766666777778888888888777654 23
Q ss_pred EecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 278 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 278 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
.. ...+++|+.|++++| .+..+|..+..+++|+.|++++|.. ..++ +..+++|+.|++.+|+
T Consensus 289 ~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred cc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc-ceeC--chhhccCCEEEcCCCC
Confidence 33 556778888888875 5677776667778888888888774 3443 5677888888888876
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.9e-26 Score=212.20 Aligned_cols=268 Identities=16% Similarity=0.126 Sum_probs=220.9
Q ss_pred cCCeeeEEEcCCCCcccCCcc-cCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEE
Q 044637 64 KFKHLRVLNLGSAVLDQYPPG-LENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHL 140 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 140 (370)
.++++++|+++++.++.+|.. +..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+++ .++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 568999999999999977765 678999999999999999775 489999999999999998877764 47899999999
Q ss_pred EccCCcCCCCCCCC-CCCCCCCceeccccCC-CC-CccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC
Q 044637 141 NFGSITLPAPPKNN-SSTLKNLIFISALHPG-SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 217 (370)
Q Consensus 141 ~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 217 (370)
+++ ++....+|.. +.++++|++|++.++. .. .+..+..+++|+.|+++++. ... + .+..+++|+.|++++.
T Consensus 123 ~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~-~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp ECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSB-C--CGGGCTTCSEEECCSS
T ss_pred ECC-CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCc-c--ccccccccceeecccc
Confidence 999 8777778766 5899999999988887 43 34568899999999999985 322 2 3567899999999872
Q ss_pred C-Cc----cccceEEE--------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCC
Q 044637 218 G-NM----RQLSRMIL--------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSF 284 (370)
Q Consensus 218 ~-~~----~~L~~L~l--------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (370)
. .. .+++.+.+ ..... ++|++|++++|.+.+. ..++.+++|+.|++++|.+.+.. +.. +..+
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l 271 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM-YHP-FVKM 271 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEECCCC-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE-SGG-GTTC
T ss_pred cccccCCCCcceEEECCCCeeeecccccc-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC-hhH-cccc
Confidence 1 11 15666665 11223 7899999999987653 57899999999999999887543 334 7889
Q ss_pred ccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 285 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 285 ~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++|+.|+++++ .++.++.....+++|+.|++++|. +..+|..+..+++|++|++.+|+
T Consensus 272 ~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 272 QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 99999999994 689999888899999999999997 55788888899999999999997
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.7e-26 Score=209.39 Aligned_cols=233 Identities=22% Similarity=0.246 Sum_probs=192.9
Q ss_pred cCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEcc
Q 044637 64 KFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 143 (370)
..+.+++|+++++.++.+|+.+..+++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45889999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCcC-CCCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 144 SITL-PAPPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 144 ~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
+|. .+.+|..++. .. ....+..+++|+.|++++|. ...+|..++.+
T Consensus 159 -~n~~~~~~p~~~~~------~~-------~~~~~~~l~~L~~L~L~~n~---l~~lp~~l~~l---------------- 205 (328)
T 4fcg_A 159 -ACPELTELPEPLAS------TD-------ASGEHQGLVNLQSLRLEWTG---IRSLPASIANL---------------- 205 (328)
T ss_dssp -EETTCCCCCSCSEE------EC--------CCCEEESTTCCEEEEEEEC---CCCCCGGGGGC----------------
T ss_pred -CCCCccccChhHhh------cc-------chhhhccCCCCCEEECcCCC---cCcchHhhcCC----------------
Confidence 644 6667664432 11 12335668889999999884 33555555444
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT 302 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 302 (370)
++|++|++++|.+.+ .+..++.+++|++|++++|.+.+.. +.. ++.+++|++|++++|+....+|
T Consensus 206 ------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 206 ------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-PPI-FGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-CCC-TTCCCCCCEEECTTCTTCCBCC
T ss_pred ------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-HHH-hcCCCCCCEEECCCCCchhhcc
Confidence 666777777777654 5567889999999999998887755 445 7889999999999998888999
Q ss_pred eCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 303 MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 303 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
..++.+++|+.|++++|..++.+|..+.++++|+.+.+..+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 889999999999999999999999999999999999988653
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.1e-26 Score=230.51 Aligned_cols=276 Identities=15% Similarity=0.088 Sum_probs=178.8
Q ss_pred hHHHhc--cCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCC-Ccc--cChhhhcCC-------CCcEEecCCCcC
Q 044637 58 CENFCK--KFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPS-LKC--LPSLLCTLI-------NLQTLEMPSSYI 124 (370)
Q Consensus 58 ~~~~~~--~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~ 124 (370)
++..+. ++++|++|+|++|.+. .+|..++.+++|++|++++|. ++. +|..++.++ +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 455544 8999999999999876 889899999999999999998 774 888777766 999999999988
Q ss_pred ccccH--HHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCC-ccEEEEecccccchhcHH
Q 044637 125 DHSPE--DIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPN-VQTLRISGDLSYYHSGVS 200 (370)
Q Consensus 125 ~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~ 200 (370)
..+|. .++++++|++|+++ +|....+| .++.+++|+.|++.++. ..+|..+..+++ |+.|++++|. . ..+|
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls-~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~--L-~~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCV-HNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK--L-KYIP 635 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECT-TSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC--C-CSCC
T ss_pred CccCChhhhhcCCCCCEEECC-CCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC--C-CcCc
Confidence 89988 89999999999999 77655888 78889999999988777 777778888888 9999998884 3 3666
Q ss_pred HhhhccCC--CCEEEEec---CCCc------------cccceEEE-----------ecCCCCCCceEEEEeccCCCCCCc
Q 044637 201 KSLCQLHK--LECLKLVN---EGNM------------RQLSRMIL-----------SEYKFPPSLTQLSLSNTELMEDPM 252 (370)
Q Consensus 201 ~~l~~l~~--L~~L~l~~---~~~~------------~~L~~L~l-----------~~~~~p~~L~~L~l~~~~~~~~~~ 252 (370)
..+..++. |+.|++++ .+.. .+|+.|.+ .+..+ ++|+.|++++|.+. .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCC-ccC
Confidence 66555543 77777765 1110 03444444 11133 45555555555543 222
Q ss_pred cccc--------CCCCCCeEEeecccccCceeEEecCC--CCccccEEEecCCCCCceeEeCCCCCCCcceEeecC----
Q 044637 253 PTLE--------ELPHLEVLKLKQNSYLERKLVCVGCS--SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP---- 318 (370)
Q Consensus 253 ~~l~--------~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~---- 318 (370)
..+. ++++|+.|++++|.+.. ++.. +. .+++|+.|+|++| .+..+|..+..+++|+.|++++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~--lp~~-l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDD-FRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCC--CCGG-GSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCT
T ss_pred hHHhccccccccccCCccEEECCCCCCcc--chHH-hhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCc
Confidence 2221 12255555555555441 1222 22 4555555555553 3444544445555555555543
Q ss_pred --CcccCCCchhcccCCCCcEEEecCCC
Q 044637 319 --CAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 319 --c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
|...+.+|..+..+++|+.|++++|.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred ccccccccChHHHhcCCCCCEEECCCCC
Confidence 33334445555555555555555553
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.9e-26 Score=206.40 Aligned_cols=209 Identities=20% Similarity=0.211 Sum_probs=163.8
Q ss_pred cCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccc
Q 044637 88 FFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISAL 167 (370)
Q Consensus 88 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 167 (370)
..++++|+++++.++.+|..++++++|++|++++|.+..+|..++++++|++|+++ +|....+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls-~n~l~~lp~~l~~l~~L~~L~-- 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA-RNPLRALPASIASLNRLRELS-- 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEE-SCCCCCCCGGGGGCTTCCEEE--
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECC-CCccccCcHHHhcCcCCCEEE--
Confidence 46888888888888888888888888888888888777888888888888888888 665445665555555555555
Q ss_pred cCCCCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCC
Q 044637 168 HPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTEL 247 (370)
Q Consensus 168 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~ 247 (370)
+++|. ....+|..++.. .+.+ .+..+ ++|++|++++|.+
T Consensus 157 --------------------L~~n~--~~~~~p~~~~~~------~~~~------------~~~~l-~~L~~L~L~~n~l 195 (328)
T 4fcg_A 157 --------------------IRACP--ELTELPEPLAST------DASG------------EHQGL-VNLQSLRLEWTGI 195 (328)
T ss_dssp --------------------EEEET--TCCCCCSCSEEE------C-CC------------CEEES-TTCCEEEEEEECC
T ss_pred --------------------CCCCC--CccccChhHhhc------cchh------------hhccC-CCCCEEECcCCCc
Confidence 44442 333333322211 1111 33446 8899999999987
Q ss_pred CCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCch
Q 044637 248 MEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE 327 (370)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~ 327 (370)
. ..|..++.+++|++|++++|.+.+ ++.. ++.+++|++|++++|+....+|..++.+++|+.|++++|...+.+|.
T Consensus 196 ~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 196 R-SLPASIANLQNLKSLKIRNSPLSA--LGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp C-CCCGGGGGCTTCCEEEEESSCCCC--CCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred C-cchHhhcCCCCCCEEEccCCCCCc--Cchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 6 778889999999999999999875 2334 77899999999999888889999999999999999999999999999
Q ss_pred hcccCCCCcEEEecCCC
Q 044637 328 ELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 328 ~~~~l~~L~~L~l~~~~ 344 (370)
.+..+++|++|++++|+
T Consensus 272 ~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TGGGCTTCCEEECTTCT
T ss_pred hhhcCCCCCEEeCCCCC
Confidence 99999999999999986
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1e-25 Score=221.25 Aligned_cols=110 Identities=22% Similarity=0.193 Sum_probs=69.1
Q ss_pred CCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE-eCCCCCCC
Q 044637 232 KFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPK 310 (370)
Q Consensus 232 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~l~~ 310 (370)
.+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+...+.. ++.+++|+.|++++| .++.++ ..++.+++
T Consensus 422 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 422 SL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKC-QLEQISWGVFDTLHR 498 (606)
T ss_dssp TC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred cc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCC-cCCccChhhhccccc
Confidence 45 677777777777666666667777777777777777765444444 566677777777764 344443 34556666
Q ss_pred cceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 311 LESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 311 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
|+.|++++|......|..+..+++|++|++++|.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 6666666665444445555555555555555553
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.5e-26 Score=222.08 Aligned_cols=268 Identities=19% Similarity=0.234 Sum_probs=194.7
Q ss_pred HHHhccCCeeeEEEcCCCCcccC-CcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-Hhccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMML 135 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~ 135 (370)
+.++..+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|. .++++++|++|++++|.+..+|.. ++.++
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 45678899999999999998844 4578899999999999999886654 568899999999999988888876 47899
Q ss_pred cCcEEEccCCcCCCC-CCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEE
Q 044637 136 KLMHLNFGSITLPAP-PKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK 213 (370)
Q Consensus 136 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 213 (370)
+|++|+++ +|.... .|..++.+++|++|++.++. ...+ ++.+++|+.|+++++. . .. +...++|+.|+
T Consensus 148 ~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~--l-~~----l~~~~~L~~L~ 217 (597)
T 3oja_B 148 KLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL--L-ST----LAIPIAVEELD 217 (597)
T ss_dssp TCCEEECC-SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC--C-SE----EECCTTCSEEE
T ss_pred CCCEEEee-CCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc--c-cc----ccCCchhheee
Confidence 99999999 666444 45568889999999987777 4332 5567788888887774 2 11 23345666776
Q ss_pred EecCC------Cc-cccceEEE---------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeE
Q 044637 214 LVNEG------NM-RQLSRMIL---------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLV 277 (370)
Q Consensus 214 l~~~~------~~-~~L~~L~l---------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 277 (370)
+++.. .. .+|+.|.+ ++..+ ++|++|++++|.+.+..|..++.+++|+.|++++|.+.+ ++
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~ 294 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LN 294 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EE
T ss_pred ccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CC
Confidence 66511 00 03444444 45566 778888888887776667777788888888888777755 23
Q ss_pred EecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 278 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 278 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
.. ...+++|+.|+|++| .+..+|..+..+++|+.|++++|... .+| +..+++|+.|++.+|+
T Consensus 295 ~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSC
T ss_pred cc-cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEEEeeCCC
Confidence 43 556778888888874 46677766777888888888887743 333 5567888888888876
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.2e-25 Score=218.95 Aligned_cols=268 Identities=20% Similarity=0.152 Sum_probs=174.0
Q ss_pred eeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccC
Q 044637 67 HLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 144 (370)
.|++|++++|.++.++ ..++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~- 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK- 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC-
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC-
Confidence 7899999999988554 458889999999999999999998899999999999999977665 4578889999999999
Q ss_pred CcC-CCCCCCC-CCCCCCCceeccccCC-CCC---ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC
Q 044637 145 ITL-PAPPKNN-SSTLKNLIFISALHPG-SCT---PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 218 (370)
Q Consensus 145 ~~~-~~~~~~~-l~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 218 (370)
++. ...++.. +..+++|++|++.++. ... +..+..+++|+.|+++++. .....+..+..+++|+.|++++..
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCc
Confidence 665 4455544 7889999999987777 322 5678889999999999885 555667788888999999987611
Q ss_pred CccccceEEE--ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeE--EecCCCCccccEEEecC
Q 044637 219 NMRQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLV--CVGCSSFPQLKILHLKS 294 (370)
Q Consensus 219 ~~~~L~~L~l--~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 294 (370)
+..... ++..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..++ .. +..+++|+.|++++
T Consensus 412 ----l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 412 ----LKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSF 485 (606)
T ss_dssp ----EECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTT
T ss_pred ----CCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCC
Confidence 000000 13344 5555555555554444444455555555555555554432211 11 33444555555554
Q ss_pred CCCCcee-EeCCCCCCCcc-----------------------eEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 295 MLWLEEW-TMGAGAMPKLE-----------------------SLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 295 ~~~l~~i-~~~~~~l~~L~-----------------------~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
| .++.+ |..++.+++|+ .|++++|......|..+..+++|+.|++.+||
T Consensus 486 n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 486 C-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred C-ccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 3 23333 23344444444 45555554443344445556666666666654
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=4.7e-26 Score=224.47 Aligned_cols=262 Identities=19% Similarity=0.218 Sum_probs=154.4
Q ss_pred CeeeEEEcCCCCcccCCc--ccCCcCCCcEEeeCCCCCc-ccChhhhcCCCCcEEecCCCcCccccHHHhcccc-CcEEE
Q 044637 66 KHLRVLNLGSAVLDQYPP--GLENFFYLKYLKLNIPSLK-CLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLK-LMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~ 141 (370)
++|++|++++|.++.+|. .++.+++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..++.+++ |++|+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 444444444444444444 4444445555555554444 444 444444555555555444444444445554 55555
Q ss_pred ccCCcCCCCCCCCCCCCC--CCceeccccCC--CCCccccC-------CCCCccEEEEecccccchhcHHHh-hhccCCC
Q 044637 142 FGSITLPAPPKNNSSTLK--NLIFISALHPG--SCTPDILG-------RLPNVQTLRISGDLSYYHSGVSKS-LCQLHKL 209 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L 209 (370)
++ ++....+|..+..++ +|++|++.++. ...|..+. .+++|+.|++++|. . ..+|.. +..+++|
T Consensus 384 Ls-~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l-~~lp~~~~~~l~~L 459 (636)
T 4eco_A 384 FA-HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--I-SKFPKELFSTGSPL 459 (636)
T ss_dssp CC-SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--C-CSCCTHHHHTTCCC
T ss_pred cc-CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--c-CcCCHHHHccCCCC
Confidence 55 443334444444332 45555544444 33333343 44455555555552 2 233333 2235555
Q ss_pred CEEEEecCCCccccceEEEe--------cCCCCCCceEEEEeccCCCCCCccccc--CCCCCCeEEeecccccCceeEEe
Q 044637 210 ECLKLVNEGNMRQLSRMILS--------EYKFPPSLTQLSLSNTELMEDPMPTLE--ELPHLEVLKLKQNSYLERKLVCV 279 (370)
Q Consensus 210 ~~L~l~~~~~~~~L~~L~l~--------~~~~p~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~ 279 (370)
+.|++++.. +..+.-. ...+ ++|++|++++|.+. .+|..+. .+++|+.|++++|.+.+ ++..
T Consensus 460 ~~L~Ls~N~----l~~i~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~ 531 (636)
T 4eco_A 460 SSINLMGNM----LTEIPKNSLKDENENFKNT-YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQ 531 (636)
T ss_dssp SEEECCSSC----CSBCCSSSSEETTEECTTG-GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCG
T ss_pred CEEECCCCC----CCCcCHHHhcccccccccc-CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChh
Confidence 555555411 1111001 1112 28999999999886 5677776 89999999999998886 4555
Q ss_pred cCCCCccccEEEecC------CCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 280 GCSSFPQLKILHLKS------MLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 280 ~~~~~~~L~~L~l~~------~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+..+++|+.|++++ +.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 532 -~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 532 -PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp -GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred -hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 77889999999954 333457788888999999999999986 78888765 799999999985
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-25 Score=218.40 Aligned_cols=269 Identities=16% Similarity=0.128 Sum_probs=221.8
Q ss_pred cCCeeeEEEcCCCCcccCCcc-cCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHH-HhccccCcEE
Q 044637 64 KFKHLRVLNLGSAVLDQYPPG-LENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHL 140 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 140 (370)
.+.++++++++++.++.+|+. +..+++|++|++++|.+..++ ..++.+++|++|++++|.+..+|+. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 468899999999999977764 678999999999999999765 4899999999999999988777754 6899999999
Q ss_pred EccCCcCCCCCCCC-CCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC
Q 044637 141 NFGSITLPAPPKNN-SSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 217 (370)
Q Consensus 141 ~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 217 (370)
+++ +|....+|.. ++++++|++|++.++. ...+..++.+++|+.|++++|. ... + .+..+++|+.|++++.
T Consensus 129 ~L~-~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 129 VLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEECCSS
T ss_pred Eee-CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--ChhhhhhhhhhhcccC
Confidence 999 7776677766 5899999999988888 4445568999999999999985 322 2 2567889999999871
Q ss_pred C-Cc----cccceEEE-------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCc
Q 044637 218 G-NM----RQLSRMIL-------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFP 285 (370)
Q Consensus 218 ~-~~----~~L~~L~l-------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 285 (370)
. .. .+++.|.+ .....|++|+.|++++|.+.+ +..++.+++|+.|++++|.+.+.. +.. ++.++
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~ 278 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHP-FVKMQ 278 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGG-GTTCS
T ss_pred ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-HHH-hcCcc
Confidence 1 11 15666666 112233789999999998765 467899999999999999887643 344 78899
Q ss_pred cccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 286 QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 286 ~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+|+.|+|++| .+..+|.....+++|+.|++++|.. ..+|..+..+++|+.|++++|.
T Consensus 279 ~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 279 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCC
Confidence 9999999994 6899998888999999999999984 4789888999999999999997
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=9e-27 Score=209.95 Aligned_cols=242 Identities=19% Similarity=0.203 Sum_probs=184.2
Q ss_pred CeeeEEEcCCCCcc---cCCcccCCcCCCcEEeeCC-CCCc-ccChhhhcCCCCcEEecCCCcCc-cccHHHhccccCcE
Q 044637 66 KHLRVLNLGSAVLD---QYPPGLENFFYLKYLKLNI-PSLK-CLPSLLCTLINLQTLEMPSSYID-HSPEDIWMMLKLMH 139 (370)
Q Consensus 66 ~~L~~L~L~~~~~~---~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 139 (370)
.+++.|+++++.++ .+|+.+..+++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999987 5888999999999999995 7777 78989999999999999999775 78888999999999
Q ss_pred EEccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCC-CccEEEEecccccchhcHHHhhhccCCCCEEEEe
Q 044637 140 LNFGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLP-NVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 215 (370)
Q Consensus 140 L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 215 (370)
|+++ ++. ...+|..+.++++|++|++.++. ...|..+..++ +|+.|+++++. ..+..|..+..+
T Consensus 130 L~Ls-~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l--------- 197 (313)
T 1ogq_A 130 LDFS-YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANL--------- 197 (313)
T ss_dssp EECC-SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGC---------
T ss_pred EeCC-CCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe--eeccCChHHhCC---------
Confidence 9999 665 55778888888888888877777 46777788887 88888888874 444555555444
Q ss_pred cCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCC
Q 044637 216 NEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSM 295 (370)
Q Consensus 216 ~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 295 (370)
. |++|++++|.+.+..+..++.+++|+.|++++|.+.+... . +..+++|++|++++|
T Consensus 198 -------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 198 -------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--K-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp -------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--G-CCCCTTCCEEECCSS
T ss_pred -------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--c-ccccCCCCEEECcCC
Confidence 3 5566666666555666677777777777777777754331 1 455677788888775
Q ss_pred CCCc-eeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 296 LWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 296 ~~l~-~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
. +. .+|..+..+++|+.|++++|...+.+|.. ..+++|+.+++.+|+
T Consensus 255 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 255 R-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp C-CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 3 44 66666777778888888887766667765 667777777777775
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.2e-25 Score=220.73 Aligned_cols=258 Identities=17% Similarity=0.136 Sum_probs=192.1
Q ss_pred HHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCc-cccH-HHhcccc
Q 044637 60 NFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYID-HSPE-DIWMMLK 136 (370)
Q Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~ 136 (370)
..|..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..++.+++|++|++++|.+. .+|. .++.+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 347889999999999999999999999999999999999998865 567888899999999888543 5554 3778888
Q ss_pred CcEEEccCCcCCCCC---CCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHH-HhhhccCCCC
Q 044637 137 LMHLNFGSITLPAPP---KNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQLHKLE 210 (370)
Q Consensus 137 L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~ 210 (370)
|++|+++ ++..... +..++.+++|++|++.++. ...+..+..+++|+.|+++++. .....+ ..+..+++|+
T Consensus 352 L~~L~l~-~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 352 LRELDLS-HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CCEEECC-SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--EECCTTCCTTTTCTTCC
T ss_pred CCEEECC-CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--CCCcccchhhhCcccCC
Confidence 8888888 6553333 5567778888888877666 3445566777777777777774 333333 2366677777
Q ss_pred EEEEecC---C---Ccc----ccceEEE--------------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEe
Q 044637 211 CLKLVNE---G---NMR----QLSRMIL--------------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKL 266 (370)
Q Consensus 211 ~L~l~~~---~---~~~----~L~~L~l--------------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 266 (370)
.|++++. + ..+ +|+.|.+ .+..+ ++|++|++++|.+.+..+..++.+++|+.|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 7777651 1 111 4555555 24556 88999999999888777888899999999999
Q ss_pred ecccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCC
Q 044637 267 KQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKL 325 (370)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l 325 (370)
++|.+.+.. +.. +..+++| .|++++| .++.++. .++.+++|+.|++++|+.....
T Consensus 508 s~N~l~~~~-~~~-l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 508 SHNRLTSSS-IEA-LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CSSCCCGGG-GGG-GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCCccCcCC-hhH-hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999887654 333 6788888 9999995 4665543 4678899999999999966543
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9.2e-25 Score=207.70 Aligned_cols=264 Identities=21% Similarity=0.217 Sum_probs=152.6
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.++.+++ +..+++|++|++++|.+..++. ++++++|++|++++|.+..++. +.++++|++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence 5778899999999998887666 8888999999999998887776 8889999999999988877765 78889999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC---C
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE---G 218 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~ 218 (370)
++ +|....++ .++.+++|++|++.......+ .+..+++|+.|+++++. ...+ ..+..+++|+.|++++. +
T Consensus 141 l~-~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 141 LS-SNTISDIS-ALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNK---VSDI-SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EE-EEEECCCG-GGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSCCCC
T ss_pred CC-CCccCCCh-hhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCc---CCCC-hhhccCCCCCEEEecCCcccc
Confidence 98 66544444 356666666666432112222 25556666666666553 1111 12445555555555541 0
Q ss_pred C-cc----ccceEEE---------ecCCCCCCceEEEEeccCCCCCCc--------------------ccccCCCCCCeE
Q 044637 219 N-MR----QLSRMIL---------SEYKFPPSLTQLSLSNTELMEDPM--------------------PTLEELPHLEVL 264 (370)
Q Consensus 219 ~-~~----~L~~L~l---------~~~~~p~~L~~L~l~~~~~~~~~~--------------------~~l~~l~~L~~L 264 (370)
. .+ +|+.|.+ .+..+ ++|++|++++|.+.+..+ ..++.+++|+.|
T Consensus 214 ~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 214 ITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred cccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence 0 00 3333333 22233 445555555544433221 013444444444
Q ss_pred EeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 265 KLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++++|.+.+... +..+++|+.|++++| .+..++. +..+++|+.|++++|.. ..+ ..+..+++|+.|++.+|.
T Consensus 293 ~L~~n~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 293 ELNENQLEDISP----ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNKV-SDV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSCCSCCGG----GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSSC
T ss_pred EcCCCcccCchh----hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCcc-CCc-hhhccCCCCCEEeCCCCc
Confidence 444444433211 334455555555553 2443332 44556666666666542 223 245566666666666664
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.6e-25 Score=201.73 Aligned_cols=259 Identities=16% Similarity=0.203 Sum_probs=210.4
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCC-cCccccHHHhccccCcEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSS-YIDHSPEDIWMMLKLMHL 140 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L 140 (370)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++| ....++ .+..+++|++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 789999999999999988765 58999999999999999998886 899999999999999 555554 58999999999
Q ss_pred EccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCC
Q 044637 141 NFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGN 219 (370)
Q Consensus 141 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 219 (370)
+++ ++....++. +..+++|++|++.++. ...+. +..+++|+.|+++++. ... .+. +..+++|+.|++++..
T Consensus 161 ~l~-~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~-~~~-~~~~~~L~~L~l~~n~- 232 (347)
T 4fmz_A 161 TVT-ESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ--ITD-ITP-VANMTRLNSLKIGNNK- 232 (347)
T ss_dssp ECC-SSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCSSC-
T ss_pred Eec-CCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC--CCC-Cch-hhcCCcCCEEEccCCc-
Confidence 999 777555544 7899999999988888 55544 8889999999999985 333 322 7889999999998722
Q ss_pred ccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCc
Q 044637 220 MRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLE 299 (370)
Q Consensus 220 ~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 299 (370)
+..+. .+..+ ++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.. . +..+++|+.|++++|..-.
T Consensus 233 ---l~~~~-~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 233 ---ITDLS-PLANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS---V-LNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp ---CCCCG-GGTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSCCCG
T ss_pred ---cCCCc-chhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh---h-hcCCCCCCEEECcCCcCCC
Confidence 22211 35677 9999999999987653 56889999999999999887642 2 6788999999999975333
Q ss_pred eeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 300 EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 300 ~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
..+..++.+++|+.|++++|+... ++. +..+++|++|++.+|+
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSSCC-
T ss_pred cChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehhhhc
Confidence 444557789999999999999554 444 7889999999999996
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.2e-25 Score=213.18 Aligned_cols=272 Identities=16% Similarity=0.142 Sum_probs=212.0
Q ss_pred CeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCc-cc-ChhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEE
Q 044637 66 KHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLK-CL-PSLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 141 (370)
++|++|++++|.++ ..|..+..+++|++|++++|.+. .+ +..++.+++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999 45778999999999999999987 55 56799999999999999977665 67899999999999
Q ss_pred ccCCcCCC-CCCCC--CCCCCCCceeccccCC-CCC-ccc-cCCCCCccEEEEecccccchhcHHHhhhcc---------
Q 044637 142 FGSITLPA-PPKNN--SSTLKNLIFISALHPG-SCT-PDI-LGRLPNVQTLRISGDLSYYHSGVSKSLCQL--------- 206 (370)
Q Consensus 142 l~~~~~~~-~~~~~--l~~l~~L~~L~l~~~~-~~~-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l--------- 206 (370)
++ +|... ..+.. +..+++|++|++.++. ... +.. +..+++|+.|+++++. .....+..+..+
T Consensus 110 L~-~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 110 LT-QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp CT-TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--BSCCCTTTSGGGTTCEEEEEE
T ss_pred CC-CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--ccccChhhhhccccccccccc
Confidence 99 66633 23333 8899999999988887 443 444 7899999999999985 444444444443
Q ss_pred -------------------------CCCCEEEEecCCC---c----------cccceEEEecC-----------------
Q 044637 207 -------------------------HKLECLKLVNEGN---M----------RQLSRMILSEY----------------- 231 (370)
Q Consensus 207 -------------------------~~L~~L~l~~~~~---~----------~~L~~L~l~~~----------------- 231 (370)
++|+.|++++..- . .+++.+.+.-.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 4455555554100 0 03444433100
Q ss_pred ------CCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCcee-EeC
Q 044637 232 ------KFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEW-TMG 304 (370)
Q Consensus 232 ------~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~ 304 (370)
.. ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +.. +..+++|++|++++| .++.+ +..
T Consensus 267 ~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~ 342 (455)
T 3v47_A 267 FTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNA-FWGLTHLLKLNLSQN-FLGSIDSRM 342 (455)
T ss_dssp TTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECCSS-CCCEECGGG
T ss_pred cccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhH-hcCcccCCEEECCCC-ccCCcChhH
Confidence 12 57999999999988878888999999999999999887533 333 778899999999995 57766 456
Q ss_pred CCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 305 AGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 305 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++.+++|+.|++++|......|..+..+++|++|++.+|.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 7899999999999998766668889999999999999986
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=5.8e-25 Score=214.23 Aligned_cols=111 Identities=23% Similarity=0.214 Sum_probs=90.8
Q ss_pred CCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCcee-EeCCCCCC
Q 044637 231 YKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMP 309 (370)
Q Consensus 231 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~l~ 309 (370)
..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..++.. +..+++|+.|++++| .++.+ |..+..++
T Consensus 418 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 418 LSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp TTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred hcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 456 788888888888777777778889999999999888875455555 788999999999996 46666 66788999
Q ss_pred CcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 310 KLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 310 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+|+.|++++|......|..+..+++|++|++.+|+
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999998665556678899999999999865
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=1.6e-24 Score=196.84 Aligned_cols=262 Identities=18% Similarity=0.201 Sum_probs=206.1
Q ss_pred eeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccC
Q 044637 67 HLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 144 (370)
++++++++++.++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls- 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS- 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC-
Confidence 68899999998888887664 689999999999997765 689999999999999987776 6778899999999999
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC-CCC-ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
++....+|..+. ++|++|++.++. ... +..+..+++|+.|+++++.-...+..+..+..+++|+.|++++..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---- 182 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---- 182 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC----
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc----
Confidence 777667776654 789999988777 433 445788999999999998511223556788899999999998722
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT 302 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 302 (370)
+..+ . ...+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +.. +..+++|++|++++| .++.+|
T Consensus 183 l~~l--~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 183 ITTI--P-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGS-LANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp CCSC--C-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTT-GGGSTTCCEEECCSS-CCSSCC
T ss_pred cccC--C-ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhh-ccCCCCCCEEECCCC-cCccCC
Confidence 2211 1 122278999999999987777788999999999999998876532 222 567889999999995 688999
Q ss_pred eCCCCCCCcceEeecCCcccCCCch-hcc------cCCCCcEEEecCCC
Q 044637 303 MGAGAMPKLESLILNPCAYLRKLPE-ELW------CIKSLCKLELHWPQ 344 (370)
Q Consensus 303 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~------~l~~L~~L~l~~~~ 344 (370)
..+..+++|+.|++++|... .++. .+. ..++|+.+++.++|
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCc
Confidence 88999999999999999844 4432 232 24789999999998
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.5e-24 Score=210.97 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=72.1
Q ss_pred CCceEEEEeccCCCCCCcc-cccCCCCCCeEEeecccccCceeEEecCCCC-ccccEEEecCCCCCceeEeCCCCCCCcc
Q 044637 235 PSLTQLSLSNTELMEDPMP-TLEELPHLEVLKLKQNSYLERKLVCVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLE 312 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~i~~~~~~l~~L~ 312 (370)
++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+.. ...+ ++|+.|++++| .++++|..+..+++|+
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~ 476 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-----FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQ 476 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-----GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCS
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-----hhhhcCcCCEEECCCC-cCcccChhhcCCCCCC
Confidence 5555555555554442222 2445555666666555554432 2233 58999999985 6888988888999999
Q ss_pred eEeecCCcccCCCchh-cccCCCCcEEEecCCC
Q 044637 313 SLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 344 (370)
Q Consensus 313 ~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~ 344 (370)
.|++++|.. +.+|.. +..+++|+.|++.+|+
T Consensus 477 ~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 477 ELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSSCC-CCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCCCC-CCCCHHHHhcCCCCCEEEecCCC
Confidence 999999984 478876 8889999999999876
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=210.26 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=69.8
Q ss_pred HHHhccCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcc--ccHHHhccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDH--SPEDIWMML 135 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~ 135 (370)
+..|..+++|++|++++|.++ ..|..++.+++|++|++++|.++.+|.. .+++|++|++++|.+.. +|..+++++
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCC
Confidence 456788888999999988888 4467888888999999999888888766 78888999998887654 567888888
Q ss_pred cCcEEEccCCcC
Q 044637 136 KLMHLNFGSITL 147 (370)
Q Consensus 136 ~L~~L~l~~~~~ 147 (370)
+|++|+++ ++.
T Consensus 116 ~L~~L~L~-~n~ 126 (520)
T 2z7x_B 116 QLKFLGLS-TTH 126 (520)
T ss_dssp TCCEEEEE-ESS
T ss_pred cceEEEec-Ccc
Confidence 88888888 554
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.2e-24 Score=202.99 Aligned_cols=253 Identities=18% Similarity=0.094 Sum_probs=142.9
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| ++.+++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 456666666666666666543 566666666666666666554 566666666666666555554 55666666666
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCC
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGN 219 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 219 (370)
++ ++....++ ++.+++|++|++..+. ..+ .++.+++|+.|+++++. ...++ +..+++|+.|++++..
T Consensus 134 l~-~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~---l~~l~--l~~l~~L~~L~l~~N~- 202 (457)
T 3bz5_A 134 CA-RNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK---ITELD--VSQNKLLNRLNCDTNN- 202 (457)
T ss_dssp CT-TSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC---CCCCC--CTTCTTCCEEECCSSC-
T ss_pred CC-CCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc---cceec--cccCCCCCEEECcCCc-
Confidence 66 55433332 5566666666665553 222 35566677777777663 22233 5566667777766511
Q ss_pred ccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCcee-----------------------
Q 044637 220 MRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKL----------------------- 276 (370)
Q Consensus 220 ~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----------------------- 276 (370)
++.+ .+..+ ++|++|++++|.+.+ .| ++.+++|+.|++++|.+.+...
T Consensus 203 ---l~~~--~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 203 ---ITKL--DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp ---CSCC--CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred ---CCee--ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCC
Confidence 1111 23445 566666666665544 22 4555666666665555543210
Q ss_pred -----EEecCCCCccccEEEecCCCCCceeEeC--------CCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCC
Q 044637 277 -----VCVGCSSFPQLKILHLKSMLWLEEWTMG--------AGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 277 -----~~~~~~~~~~L~~L~l~~~~~l~~i~~~--------~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 343 (370)
... .+.+++|+.|++++|..+..+|.. +..+++|+.|++++|.... ++ +..+++|+.|++.++
T Consensus 274 n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 274 NTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCC
Confidence 011 234455666666665555544431 3345566666666665333 32 666777777777776
Q ss_pred C
Q 044637 344 Q 344 (370)
Q Consensus 344 ~ 344 (370)
.
T Consensus 350 ~ 350 (457)
T 3bz5_A 350 H 350 (457)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.8e-24 Score=209.84 Aligned_cols=277 Identities=16% Similarity=0.143 Sum_probs=181.6
Q ss_pred HHhccCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCcc--ccHHHhccc
Q 044637 60 NFCKKFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDH--SPEDIWMML 135 (370)
Q Consensus 60 ~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--lp~~i~~l~ 135 (370)
..|..+++|++|++++|.++ ..|..++.+++|++|++++|.+..++.. ++++++|++|++++|.+.. .|..+++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 45677888888888888877 4446678888888888888888866654 7888888888888886653 455677888
Q ss_pred cCcEEEccCCcC-CCCCC-CCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhh-hccCCCC
Q 044637 136 KLMHLNFGSITL-PAPPK-NNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSL-CQLHKLE 210 (370)
Q Consensus 136 ~L~~L~l~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~ 210 (370)
+|++|+++ ++. ...+| ..+.++++|++|++.++. ...+..++.+++|+.|++..+. ...++..+ ..+++|+
T Consensus 124 ~L~~L~L~-~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 124 NLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE---SAFLLEIFADILSSVR 199 (549)
T ss_dssp TCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB---STTHHHHHHHSTTTBS
T ss_pred CccEEECC-CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc---ccccchhhHhhccccc
Confidence 88888888 554 45554 467788888888877766 4466777888888888888773 34444443 4577888
Q ss_pred EEEEec---CCCc---------c-ccceEEEe---------------c------------------------------CC
Q 044637 211 CLKLVN---EGNM---------R-QLSRMILS---------------E------------------------------YK 232 (370)
Q Consensus 211 ~L~l~~---~~~~---------~-~L~~L~l~---------------~------------------------------~~ 232 (370)
.|++++ .+.. . +++.+.+. + ..
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 888876 1100 0 23333220 0 00
Q ss_pred C----------------------------CCCceEEEEeccCCCCCCcccc-cCCCCCCeEEeecccccCcee--EEecC
Q 044637 233 F----------------------------PPSLTQLSLSNTELMEDPMPTL-EELPHLEVLKLKQNSYLERKL--VCVGC 281 (370)
Q Consensus 233 ~----------------------------p~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~--~~~~~ 281 (370)
+ ..+|++|++++|.+. ..|..+ +.+++|+.|++++|.+.+..+ ... +
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~ 357 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC-K 357 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC-T
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh-h
Confidence 0 034556666666543 344443 467888888888777765332 112 4
Q ss_pred CCCccccEEEecCCCCCceeE---eCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 282 SSFPQLKILHLKSMLWLEEWT---MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~i~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+.+++|++|++++| .++.++ ..++.+++|+.|++++|. ++.+|..+..+++|++|++++|.
T Consensus 358 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 358 GAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp TSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC
T ss_pred hccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC
Confidence 56777788887774 465544 235677777777777775 44677777777777777777764
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.6e-23 Score=198.20 Aligned_cols=238 Identities=17% Similarity=0.090 Sum_probs=169.1
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.++.++ ++.+++|++|++++|.++.+| ++.+++|++|++++|.+..++ ++.+++|++|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 678899999999999988765 888999999999999998876 888999999999999887775 77899999999
Q ss_pred ccCCcC-CCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC--
Q 044637 142 FGSITL-PAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE-- 217 (370)
Q Consensus 142 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-- 217 (370)
++ +|. .+.+ .++.+++|++|++.++. ..++ +..+++|+.|+++++. ... + .++.+++|+.|++++.
T Consensus 155 l~-~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 155 CH-LNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CT-TCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCSSCC
T ss_pred CC-CCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcCCcc
Confidence 99 663 5544 47788999999988877 5554 7888999999999885 322 2 3778888888888871
Q ss_pred -CCcc----ccceEEE--------ecCCCCCCceEEEEeccCC----------CCCCcccccCCCCCCeEEeecccccCc
Q 044637 218 -GNMR----QLSRMIL--------SEYKFPPSLTQLSLSNTEL----------MEDPMPTLEELPHLEVLKLKQNSYLER 274 (370)
Q Consensus 218 -~~~~----~L~~L~l--------~~~~~p~~L~~L~l~~~~~----------~~~~~~~l~~l~~L~~L~l~~~~~~~~ 274 (370)
+-.+ +|+.|.+ ....+ ++|+.|+++.+.+ .+.. ..+.+++|+.|++++|...+.
T Consensus 225 ~~ip~~~l~~L~~L~l~~N~l~~~~~~~l-~~L~~L~l~~n~L~~L~l~~n~~~~~~--~~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 225 TEIDVTPLTQLTYFDCSVNPLTELDVSTL-SKLTTLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp SCCCCTTCTTCSEEECCSSCCSCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEE--ECTTCTTCCCCCCTTCTTCCE
T ss_pred cccCccccCCCCEEEeeCCcCCCcCHHHC-CCCCEEeccCCCCCEEECCCCccCCcc--cccccccCCEEECCCCcccce
Confidence 1001 3344433 11223 3333333332222 1111 134567888888887765443
Q ss_pred eeE-------EecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCccc
Q 044637 275 KLV-------CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL 322 (370)
Q Consensus 275 ~~~-------~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l 322 (370)
... .. +..+++|++|+++++ .++.++ ++.+++|+.|++++|...
T Consensus 302 l~~~~~~L~~L~-l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 302 LDCQAAGITELD-LSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EECTTCCCSCCC-CTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCCC
T ss_pred eccCCCcceEec-hhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCCC
Confidence 311 11 456678888888884 577763 788999999999998744
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=208.05 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=184.2
Q ss_pred HHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcc--cChhhhcCCCCcEEecCCCcCccccHHHhcccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKC--LPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLK 136 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 136 (370)
+..|..+++|++|++++|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~ 137 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAH 137 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTT
T ss_pred hHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhcccccc
Confidence 56788999999999999999988776 89999999999999985 67899999999999999997655 34667777
Q ss_pred C--cEEEccCCcCC---CCCCCCCCC--------------------------CC--------------------------
Q 044637 137 L--MHLNFGSITLP---APPKNNSST--------------------------LK-------------------------- 159 (370)
Q Consensus 137 L--~~L~l~~~~~~---~~~~~~l~~--------------------------l~-------------------------- 159 (370)
| ++|+++ ++.. ...|..+.. ++
T Consensus 138 L~L~~L~l~-~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 216 (520)
T 2z7x_B 138 LNISKVLLV-LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216 (520)
T ss_dssp SCEEEEEEE-ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG
T ss_pred ceeeEEEee-cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh
Confidence 7 888888 5432 233333333 22
Q ss_pred -------------------------------CCceeccccCC--CCCcccc-----CCCCCccEEEEecccccchhcHH-
Q 044637 160 -------------------------------NLIFISALHPG--SCTPDIL-----GRLPNVQTLRISGDLSYYHSGVS- 200 (370)
Q Consensus 160 -------------------------------~L~~L~l~~~~--~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~- 200 (370)
+|++|++.++. +.+|..+ +.+++|+.+++.++. . .+|
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~--~--~~p~ 292 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV--F--GFPQ 292 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC--C--CSCT
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc--e--ecch
Confidence 34444433333 2455554 555555555555442 1 222
Q ss_pred Hhh-------------------------hccCCCCEEEEec---CC---Ccc----ccceEEE-------------ecCC
Q 044637 201 KSL-------------------------CQLHKLECLKLVN---EG---NMR----QLSRMIL-------------SEYK 232 (370)
Q Consensus 201 ~~l-------------------------~~l~~L~~L~l~~---~~---~~~----~L~~L~l-------------~~~~ 232 (370)
..+ ..+++|+.|++++ .+ ..+ +|+.|.+ ++..
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 111 3455566666655 11 000 3444444 2445
Q ss_pred CCCCceEEEEeccCCCCCCcc-cccCCCCCCeEEeecccccCceeEEecCCCC-ccccEEEecCCCCCceeEeCCCCCCC
Q 044637 233 FPPSLTQLSLSNTELMEDPMP-TLEELPHLEVLKLKQNSYLERKLVCVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPK 310 (370)
Q Consensus 233 ~p~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~i~~~~~~l~~ 310 (370)
+ ++|++|++++|.+.+..|. .+..+++|+.|++++|.+.+..+ ..+ ++|+.|++++| .++++|..+..+++
T Consensus 373 l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~ 445 (520)
T 2z7x_B 373 M-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSN-KIKSIPKQVVKLEA 445 (520)
T ss_dssp C-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSS-CCCCCCGGGGGCTT
T ss_pred C-CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCC-cccccchhhhcCCC
Confidence 6 7777777777776553444 36667778888887777765431 123 68999999985 68888887789999
Q ss_pred cceEeecCCcccCCCchh-cccCCCCcEEEecCCC
Q 044637 311 LESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 344 (370)
Q Consensus 311 L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~ 344 (370)
|+.|++++|. ++.+|.. +..+++|++|++.+|+
T Consensus 446 L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 446 LQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 9999999997 4478876 8889999999999876
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.4e-24 Score=194.74 Aligned_cols=262 Identities=18% Similarity=0.169 Sum_probs=168.1
Q ss_pred eeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccC
Q 044637 67 HLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 144 (370)
++++++++++.++.+|..+. ++|++|++++|.+..++ ..++++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~- 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS- 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC-
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC-
Confidence 57778888777777776553 57788888888777663 4677788888888888766655 5567777888888887
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
++....+|..+. ++|++|++.++. ..++ ..+..+++|+.|+++++.-...+..+..+..+ +|+.|++++..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---- 183 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---- 183 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB----
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC----
Confidence 666556666554 678888876666 4444 34677788888888777411122444555555 67777776511
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT 302 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 302 (370)
+..+ ...++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++| .++.+|
T Consensus 184 l~~l---~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 184 LTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGS-LSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp CSSC---CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTG-GGGCTTCCEEECCSS-CCCBCC
T ss_pred CCcc---CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhH-hhCCCCCCEEECCCC-cCeecC
Confidence 1110 1112256777777777766666666777777777777777665432 222 456677777777774 566777
Q ss_pred eCCCCCCCcceEeecCCcccCCCchhccc------CCCCcEEEecCCC
Q 044637 303 MGAGAMPKLESLILNPCAYLRKLPEELWC------IKSLCKLELHWPQ 344 (370)
Q Consensus 303 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~------l~~L~~L~l~~~~ 344 (370)
..+..+++|+.|++++|.....-+..+.. .++|+.|++.+|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 66777777777777777643222222222 3567777777776
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.9e-24 Score=209.65 Aligned_cols=279 Identities=18% Similarity=0.188 Sum_probs=200.0
Q ss_pred HHHhccCCeeeEEEcCCCCcccCCcc-cCCcCCCcEEeeCCCCCcc--cChhhhcCCCCcEEecCCCc-Ccccc-HHHhc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENFFYLKYLKLNIPSLKC--LPSLLCTLINLQTLEMPSSY-IDHSP-EDIWM 133 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~-~~~lp-~~i~~ 133 (370)
+..|..+++|++|++++|.++.+++. ++.+++|++|++++|.+.. .|..++++++|++|++++|. +..+| ..++.
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 45678999999999999999966654 9999999999999999984 56789999999999999995 77777 47889
Q ss_pred cccCcEEEccCCcC-CCCCCCCCCCCCCCceeccccCC-CCCcccc-CCCCCccEEEEecccccchh-------------
Q 044637 134 MLKLMHLNFGSITL-PAPPKNNSSTLKNLIFISALHPG-SCTPDIL-GRLPNVQTLRISGDLSYYHS------------- 197 (370)
Q Consensus 134 l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l-~~l~~L~~L~l~~~~~~~~~------------- 197 (370)
+++|++|+++ ++. ....|..++.+++|+.|++..+. ...+..+ ..+++|+.|+++++. ..+
T Consensus 147 l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 147 LTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN--LARFQFSPLPVDEVSS 223 (549)
T ss_dssp CCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB--CTTCCCCCCSSCCCCC
T ss_pred ccccCeeecc-CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc--cccccccccchhhhhh
Confidence 9999999999 666 55578889999999999977766 4444433 468899999999875 221
Q ss_pred ------------------cHHHhhhccCCCCEEEEec---CC--C----------c------------------------
Q 044637 198 ------------------GVSKSLCQLHKLECLKLVN---EG--N----------M------------------------ 220 (370)
Q Consensus 198 ------------------~~~~~l~~l~~L~~L~l~~---~~--~----------~------------------------ 220 (370)
.++..+..+++|+.+++.+ .+ + .
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 1222334445555555543 00 0 0
Q ss_pred ------cccceEEE----------ec-CCCCCCceEEEEeccCCCCCCc---ccccCCCCCCeEEeecccccCcee-EEe
Q 044637 221 ------RQLSRMIL----------SE-YKFPPSLTQLSLSNTELMEDPM---PTLEELPHLEVLKLKQNSYLERKL-VCV 279 (370)
Q Consensus 221 ------~~L~~L~l----------~~-~~~p~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 279 (370)
-+++.+.+ ++ ..+ ++|++|++++|.+.+..+ ..++.+++|+.|++++|.+.+... ...
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHL-KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCCCCHHHHHHC-TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccccCCHHHHhcC-ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 02444444 11 346 788999999888766543 236778888888888888765321 112
Q ss_pred cCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhc------------------ccCCCCcEEEec
Q 044637 280 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEL------------------WCIKSLCKLELH 341 (370)
Q Consensus 280 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~------------------~~l~~L~~L~l~ 341 (370)
+..+++|++|++++| .++.+|..++.+++|+.|++++|. ++.+|..+ ..+++|++|+++
T Consensus 383 -~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls 459 (549)
T 2z81_A 383 -LLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYIS 459 (549)
T ss_dssp -GGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred -hhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECC
Confidence 567788888888885 577888777778888888888876 33333322 246667777777
Q ss_pred CCC
Q 044637 342 WPQ 344 (370)
Q Consensus 342 ~~~ 344 (370)
+|.
T Consensus 460 ~N~ 462 (549)
T 2z81_A 460 RNK 462 (549)
T ss_dssp SSC
T ss_pred CCc
Confidence 664
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=9.4e-24 Score=200.74 Aligned_cols=263 Identities=22% Similarity=0.245 Sum_probs=188.7
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.+..+++ +..+++|++|++++|.++.++. ++++++|++|++++|.+..++ .++.+++|++|+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEee
Confidence 7899999999999999987666 8999999999999999998875 899999999999999766665 355555555555
Q ss_pred ccC--------------------CcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHH
Q 044637 142 FGS--------------------ITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVS 200 (370)
Q Consensus 142 l~~--------------------~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 200 (370)
++. ++....++ .+..+++|++|++.++. ...+. ++.+++|+.|+++++. ...+
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~---l~~~- 236 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ---LKDI- 236 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC---CCCC-
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC---cccc-
Confidence 440 33322222 24445555555544444 22222 4455566666666553 1122
Q ss_pred HhhhccCCCCEEEEec---CCC-cc----ccceEEE---------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCe
Q 044637 201 KSLCQLHKLECLKLVN---EGN-MR----QLSRMIL---------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEV 263 (370)
Q Consensus 201 ~~l~~l~~L~~L~l~~---~~~-~~----~L~~L~l---------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 263 (370)
..+..+++|+.|++++ .+. .+ +|+.|.+ .+..+ ++|++|++++|.+.+.. .++.+++|+.
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 313 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL-TALTNLELNENQLEDIS--PISNLKNLTY 313 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSE
T ss_pred hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCC-CccCeEEcCCCcccCch--hhcCCCCCCE
Confidence 3456677777777765 110 01 5666666 24466 88999999999876533 3789999999
Q ss_pred EEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCC
Q 044637 264 LKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 264 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 343 (370)
|++++|.+.+... +..+++|+.|++++| .+..++ .+..+++|+.|++++|......| +..+++|+.|++.+|
T Consensus 314 L~L~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 314 LTLYFNNISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred EECcCCcCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 9999999876542 568899999999996 577764 58899999999999998665555 789999999999998
Q ss_pred C
Q 044637 344 Q 344 (370)
Q Consensus 344 ~ 344 (370)
+
T Consensus 386 ~ 386 (466)
T 1o6v_A 386 A 386 (466)
T ss_dssp E
T ss_pred c
Confidence 6
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=4.3e-24 Score=212.50 Aligned_cols=280 Identities=18% Similarity=0.114 Sum_probs=177.4
Q ss_pred HHhccCCeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCcccc-HHHhcccc
Q 044637 60 NFCKKFKHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSP-EDIWMMLK 136 (370)
Q Consensus 60 ~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 136 (370)
..|.++++|++|++++|.++ ..|..++.+++|++|++++|.++.+|. .++++++|++|++++|.+..+| ..++++++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 34667777777777777776 445566777777777777777777765 4777777777777777666665 45677777
Q ss_pred CcEEEccCCcC-CCCCCCCCCCCCCCceeccccCC-CCCc-ccc--CCCCCccEEEEecccccchhcHHHhhhccCCCCE
Q 044637 137 LMHLNFGSITL-PAPPKNNSSTLKNLIFISALHPG-SCTP-DIL--GRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC 211 (370)
Q Consensus 137 L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l--~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 211 (370)
|++|+++ +|. ....+..++++++|++|++.++. ...+ ..+ ..+++|+.|+++++. .....+..+..+++|+.
T Consensus 123 L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 123 LITLDLS-HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ--IKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CCEEECC-SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC--CCCBCTTGGGGSSEECE
T ss_pred CCEEECC-CCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc--ccccChhhhhhhhhhhh
Confidence 7777777 554 34445566777777777766665 3332 222 245677777777764 33344444555555554
Q ss_pred EEEecCCC-------------ccccceEEE-----------ecCCCC-CCceEEEEeccCCCCCCcccccCCCCCCeEEe
Q 044637 212 LKLVNEGN-------------MRQLSRMIL-----------SEYKFP-PSLTQLSLSNTELMEDPMPTLEELPHLEVLKL 266 (370)
Q Consensus 212 L~l~~~~~-------------~~~L~~L~l-----------~~~~~p-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 266 (370)
|++....- ..+++.|.+ ++..++ ++|++|++++|.+.+..+..++.+++|+.|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 44432000 002344433 223331 23888888888877666677788888888888
Q ss_pred ecccccCceeEEecCCCCccccEEEecCCCCCc-----eeEe----CCCCCCCcceEeecCCcccCCCchhcccCCCCcE
Q 044637 267 KQNSYLERKLVCVGCSSFPQLKILHLKSMLWLE-----EWTM----GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCK 337 (370)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i~~----~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 337 (370)
++|.+.+.. +.. +..+++|+.|+++++..-. .+|. .++.+++|+.|++++|......+..+..+++|++
T Consensus 280 ~~n~l~~~~-~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 280 EYNNIQHLF-SHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp CSCCBSEEC-TTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred CCCccCccC-hhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 887776432 223 6677788888887632111 2222 4567788888888888766555666777788888
Q ss_pred EEecCCC
Q 044637 338 LELHWPQ 344 (370)
Q Consensus 338 L~l~~~~ 344 (370)
|++++|.
T Consensus 358 L~Ls~n~ 364 (680)
T 1ziw_A 358 LSLSNSF 364 (680)
T ss_dssp EECTTCB
T ss_pred EECCCCc
Confidence 8877763
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=198.52 Aligned_cols=269 Identities=17% Similarity=0.132 Sum_probs=221.6
Q ss_pred CCeeeEEEcCCCCccc-CCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEE
Q 044637 65 FKHLRVLNLGSAVLDQ-YPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLN 141 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 141 (370)
.+.+++|++++|.++. .+..+..+++|++|++++|.+..+ |..++++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3589999999999994 467899999999999999999966 77899999999999999998888865 68899999999
Q ss_pred ccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC
Q 044637 142 FGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 218 (370)
Q Consensus 142 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 218 (370)
++ ++. ....+..+.++++|++|++.++. ...+..+..+++|+.|+++++. .....+..+..+++|+.|++.+..
T Consensus 111 Ls-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 IS-ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CT-TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CC-CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCCc
Confidence 99 666 44456778999999999988877 3345678899999999999995 555555678999999999998722
Q ss_pred CccccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCC
Q 044637 219 NMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLW 297 (370)
Q Consensus 219 ~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 297 (370)
+..+.- .+..+ ++|++|++++|...+..+.......+|+.|++++|.+.+.. ... +..+++|+.|+++++ .
T Consensus 188 ----i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~Ls~n-~ 259 (477)
T 2id5_A 188 ----INAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLA-VRHLVYLRFLNLSYN-P 259 (477)
T ss_dssp ----CCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHH-HTTCTTCCEEECCSS-C
T ss_pred ----CcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHH-hcCccccCeeECCCC-c
Confidence 121111 45677 89999999999876766666666779999999999887532 223 678999999999995 5
Q ss_pred CceeEe-CCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 298 LEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 298 l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++.++. .+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 777764 47889999999999998776678889999999999999985
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=214.08 Aligned_cols=273 Identities=19% Similarity=0.167 Sum_probs=141.5
Q ss_pred CeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCC-ccc-ChhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEE
Q 044637 66 KHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSL-KCL-PSLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~-~~l-p~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 141 (370)
+++++|+|++|.++ ..|..+..+++|++|++++|.. ..+ |..++++++|++|++++|.+..+ |..++.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 45555666655555 3344555555666666655532 233 44555555666666655544433 44455555666666
Q ss_pred ccCCcC-CCCCCCC--CCCCCCCceeccccCC-CCC--ccccCCCCCccEEEEecccccchhcHHHhhhcc--CC-----
Q 044637 142 FGSITL-PAPPKNN--SSTLKNLIFISALHPG-SCT--PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQL--HK----- 208 (370)
Q Consensus 142 l~~~~~-~~~~~~~--l~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l--~~----- 208 (370)
++ +|. ...+|.. ++++++|++|++.++. ... +..++.+++|+.|+++++. .....+..+..+ ++
T Consensus 104 Ls-~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~--i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 104 LY-FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ--IFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CT-TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC--CCCCCSGGGHHHHHCSSCCCE
T ss_pred Cc-CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc--CCeeCHHHcccccCCccceEE
Confidence 55 443 2223332 5555556665555544 221 2345555556666555553 222222333322 33
Q ss_pred -------------------------CCEEEEecC---CCcc----------ccceEEEe--------------------c
Q 044637 209 -------------------------LECLKLVNE---GNMR----------QLSRMILS--------------------E 230 (370)
Q Consensus 209 -------------------------L~~L~l~~~---~~~~----------~L~~L~l~--------------------~ 230 (370)
|+.|++++. +... .+..+.+. +
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 444444431 0000 11111110 0
Q ss_pred CCC-CCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCcee-EeCCCCC
Q 044637 231 YKF-PPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEW-TMGAGAM 308 (370)
Q Consensus 231 ~~~-p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~l 308 (370)
..+ +++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.. +.. +..+++|++|++++| .++.+ +..+..+
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 337 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEA-FYGLDNLQVLNLSYN-LLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTT-TTTCSSCCEEEEESC-CCSCCCSCSCSSC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHH-hcCCCCCCEEECCCC-CCCccCHHHhcCC
Confidence 000 145777777777665555666667777777777766665432 222 556677777777774 34444 4456667
Q ss_pred CCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 309 PKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 309 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++|+.|++++|......+..+..+++|++|++++|.
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 777777777775433333456666777777776664
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3e-24 Score=195.15 Aligned_cols=262 Identities=17% Similarity=0.174 Sum_probs=206.2
Q ss_pred CCeeeEEEcCCCCcccC-CcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 65 FKHLRVLNLGSAVLDQY-PPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
.+++++|++++|.++.+ |..+..+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..+. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 36899999999999854 55799999999999999999966 7789999999999999998888887665 89999999
Q ss_pred cCCcCCCCCCC-CCCCCCCCceeccccCC-C---CCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC
Q 044637 143 GSITLPAPPKN-NSSTLKNLIFISALHPG-S---CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 217 (370)
Q Consensus 143 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 217 (370)
+ ++....++. .+..+++|++|++.++. . ..+..+..+ +|+.|+++++. ...+|..+. ++|+.|++++.
T Consensus 131 ~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 131 H-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---LTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp C-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---CSSCCSSSC--SSCSCCBCCSS
T ss_pred C-CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---CCccCcccc--CCCCEEECCCC
Confidence 9 777666665 47899999999988777 2 455666667 89999999984 444555443 68899988872
Q ss_pred CCccccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCC
Q 044637 218 GNMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSML 296 (370)
Q Consensus 218 ~~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 296 (370)
. +..+.. .+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ++.. +..+++|+.|+++++
T Consensus 204 ~----i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~-l~~l~~L~~L~l~~N- 274 (332)
T 2ft3_A 204 K----IQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--VPAG-LPDLKLLQVVYLHTN- 274 (332)
T ss_dssp C----CCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB--CCTT-GGGCTTCCEEECCSS-
T ss_pred c----CCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee--cChh-hhcCccCCEEECCCC-
Confidence 1 111110 46677 899999999999888777789999999999999998873 3444 678899999999995
Q ss_pred CCceeEeC-CC------CCCCcceEeecCCccc--CCCchhcccCCCCcEEEecCCC
Q 044637 297 WLEEWTMG-AG------AMPKLESLILNPCAYL--RKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 297 ~l~~i~~~-~~------~l~~L~~L~l~~c~~l--~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
.++.++.. +. ..++|+.|++.+|+.. ...|..+..+++|+.+++.+|.
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 58877642 21 2578999999999865 3556778899999999999885
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=4.6e-24 Score=193.73 Aligned_cols=261 Identities=15% Similarity=0.169 Sum_probs=205.2
Q ss_pred CeeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEcc
Q 044637 66 KHLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 143 (370)
+.+++|++++|.++.++. .+..+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 689999999999986554 789999999999999999966 7889999999999999998888887654 799999999
Q ss_pred CCcCCCCCC-CCCCCCCCCceeccccCC-C---CCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC
Q 044637 144 SITLPAPPK-NNSSTLKNLIFISALHPG-S---CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 218 (370)
Q Consensus 144 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 218 (370)
++....++ ..+.++++|++|++.++. . ..+..+..+++|+.|+++++. ...+|..+. ++|+.|++++..
T Consensus 130 -~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 130 -ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp -SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTTSC
T ss_pred -CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCCCc
Confidence 77644444 457889999999988776 2 456678889999999999984 344554443 789999998622
Q ss_pred CccccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCC
Q 044637 219 NMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLW 297 (370)
Q Consensus 219 ~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 297 (370)
+..+.. .+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ++.. +..+++|++|+++++ .
T Consensus 204 ----l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~-l~~l~~L~~L~l~~N-~ 274 (330)
T 1xku_A 204 ----ITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGG-LADHKYIQVVYLHNN-N 274 (330)
T ss_dssp ----CCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTT-TTTCSSCCEEECCSS-C
T ss_pred ----CCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CChh-hccCCCcCEEECCCC-c
Confidence 222211 56678 899999999999877777788999999999999998873 3444 778899999999995 5
Q ss_pred CceeEeCC-------CCCCCcceEeecCCcccC--CCchhcccCCCCcEEEecCC
Q 044637 298 LEEWTMGA-------GAMPKLESLILNPCAYLR--KLPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 298 l~~i~~~~-------~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~ 343 (370)
++.++... ...++|+.|++.+|+... ..|..+..+.+++.+++.+|
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 77776432 135789999999998643 34677888999999999887
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.3e-24 Score=205.71 Aligned_cols=279 Identities=19% Similarity=0.154 Sum_probs=170.8
Q ss_pred HHhccCCeeeEEEcCCCCcccC-CcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhcccc
Q 044637 60 NFCKKFKHLRVLNLGSAVLDQY-PPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLK 136 (370)
Q Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~ 136 (370)
..|..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+| ..++.+++|++|++++|.+..++. .++++++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 3567888888888888888744 456788888888888888888664 578888888888888887776664 4778888
Q ss_pred CcEEEccCCcCCC--CCCCCCCCCCCCceeccccCC-CCC-ccccCCCC---------------------------CccE
Q 044637 137 LMHLNFGSITLPA--PPKNNSSTLKNLIFISALHPG-SCT-PDILGRLP---------------------------NVQT 185 (370)
Q Consensus 137 L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~---------------------------~L~~ 185 (370)
|++|+++ ++... .+|..++++++|++|++.++. ... +..++.++ +|+.
T Consensus 126 L~~L~L~-~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 126 LKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp CCEEECC-SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccEEecC-CCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 8888888 65532 467778888888888876665 211 22222222 3444
Q ss_pred EEEecccc--------------------------------------------------------cchhcHHHhhhccCCC
Q 044637 186 LRISGDLS--------------------------------------------------------YYHSGVSKSLCQLHKL 209 (370)
Q Consensus 186 L~l~~~~~--------------------------------------------------------~~~~~~~~~l~~l~~L 209 (370)
|++.++.. ...+..+..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 44443310 0112233445556666
Q ss_pred CEEEEec---CC--Ccc---ccceEEE--------ec----------------------CCCCCCceEEEEeccCCCCCC
Q 044637 210 ECLKLVN---EG--NMR---QLSRMIL--------SE----------------------YKFPPSLTQLSLSNTELMEDP 251 (370)
Q Consensus 210 ~~L~l~~---~~--~~~---~L~~L~l--------~~----------------------~~~p~~L~~L~l~~~~~~~~~ 251 (370)
+.|++++ .. ..+ ++++|.+ .. ..+ ++|++|++++|.+....
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp SEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC-TTCCEEECCSSCCBEEE
T ss_pred cEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC-CCCCEEeCcCCccCccc
Confidence 7666655 00 000 3333333 01 233 44555555555443221
Q ss_pred --cccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE--eCCCCCCCcceEeecCCcccCCCch
Q 044637 252 --MPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLPE 327 (370)
Q Consensus 252 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~l~~L~~L~l~~c~~l~~l~~ 327 (370)
+..+..+++|++|++++|.+.+. +.. +..+++|++|++++| .+...+ ..+..+++|+.|++++|......|.
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVITM--SSN-FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEEE--EEE-EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccccCccCEEECCCCccccc--ccc-ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 33445556666666665555432 222 445667777777764 344332 2456778888888888876666777
Q ss_pred hcccCCCCcEEEecCCC
Q 044637 328 ELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 328 ~~~~l~~L~~L~l~~~~ 344 (370)
.+..+++|++|++.+|.
T Consensus 440 ~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp TTTTCTTCCEEECTTCE
T ss_pred hhhcCCcCcEEECcCCc
Confidence 77788888888888885
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=9.1e-25 Score=214.48 Aligned_cols=266 Identities=14% Similarity=0.086 Sum_probs=200.3
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCC-cCccccHHHhccccCcEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSS-YIDHSPEDIWMMLKLMHL 140 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L 140 (370)
+..+++|++|+++++.+..+| .+..+++|++|++++|.+..+| .+ .+++|++|++++| ....+ .++.+++|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 567788888888888887777 6788888888888888888888 44 7888888888888 44443 35578888888
Q ss_pred EccCCcCCCC---CCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHH-HhhhccCCCCEEEEe
Q 044637 141 NFGSITLPAP---PKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQLHKLECLKLV 215 (370)
Q Consensus 141 ~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~ 215 (370)
+++ ++.... .+..+..+++|++|++.++. ...+..+..+++|+.|+++++. .....+ ..+..+++|+.|+++
T Consensus 356 ~ls-~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 356 DLS-RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp ECC-SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE--EESTTTTTTTTTCTTCCEEECT
T ss_pred ECc-CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc--cCCccChhhhhccccCCEEECc
Confidence 888 655222 35667778888888877777 5566777788888888888874 444444 467788888888887
Q ss_pred cCCCccccceEE-EecCCCCCCceEEEEeccCCCCC-CcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEec
Q 044637 216 NEGNMRQLSRMI-LSEYKFPPSLTQLSLSNTELMED-PMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLK 293 (370)
Q Consensus 216 ~~~~~~~L~~L~-l~~~~~p~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 293 (370)
+.. +.... -.+..+ ++|++|++++|.+.+. .|..++.+++|+.|++++|.+.+.. +.. +..+++|++|+++
T Consensus 433 ~n~----l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 433 YTN----TKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGV-FDTLHRLQLLNMS 505 (606)
T ss_dssp TSC----CEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECC
T ss_pred CCC----CCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhh-hcccccCCEEECC
Confidence 621 11000 045677 8999999999987663 5777889999999999999886533 333 6788999999999
Q ss_pred CCCCCcee-EeCCCCCCCcceEeecCCcccCCCchhcccCC-CCcEEEecCCC
Q 044637 294 SMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWCIK-SLCKLELHWPQ 344 (370)
Q Consensus 294 ~~~~l~~i-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~~~ 344 (370)
+|. +..+ |..++.+++|+.|++++|. ++.+|..+..++ +|+.|++.+||
T Consensus 506 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 506 HNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 964 5544 6678899999999999998 557888888887 69999998865
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.2e-23 Score=204.64 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=73.3
Q ss_pred CCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCce-eEEecCCCCccccEEEecCCCCCce-eEeC-CCC
Q 044637 231 YKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERK-LVCVGCSSFPQLKILHLKSMLWLEE-WTMG-AGA 307 (370)
Q Consensus 231 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-i~~~-~~~ 307 (370)
..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. .+.. +..+++|++|+++++. +.. +|.. +..
T Consensus 350 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT-TTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred cCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh-hcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 445 77888888888777767777778888888888877776421 1222 5566777777777743 443 4432 222
Q ss_pred C----------------------CCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 308 M----------------------PKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 308 l----------------------~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+ ++|+.|++++|. ++.+|..+..+++|++|++.+|.
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 3 466666666664 44677777788888888888875
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=212.27 Aligned_cols=272 Identities=18% Similarity=0.168 Sum_probs=154.7
Q ss_pred HhccCCeeeEEEcCCCCcc-cC-CcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCcc-ccHH--Hhcc
Q 044637 61 FCKKFKHLRVLNLGSAVLD-QY-PPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDH-SPED--IWMM 134 (370)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~-~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l 134 (370)
.|..+++|++|++++|... .+ |..+..+++|++|++++|.+..+ |..++++++|++|++++|.+.. +|.. ++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3456666666666666432 33 45566666666666666666633 5556666666666666664432 3333 5566
Q ss_pred ccCcEEEccCCcCCCCC--CCCCCCCCCCceeccccCC----------------------------CCCccccCCCCC--
Q 044637 135 LKLMHLNFGSITLPAPP--KNNSSTLKNLIFISALHPG----------------------------SCTPDILGRLPN-- 182 (370)
Q Consensus 135 ~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~----------------------------~~~~~~l~~l~~-- 182 (370)
++|++|+++ +|....+ +..++++++|++|++.++. ...+..++.+++
T Consensus 123 ~~L~~L~Ls-~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLS-KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SSCCEEEEE-SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCCEEECC-CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 666666666 4442222 2345566666666655443 222223333333
Q ss_pred ----ccEEEEecccccchhcHHHhhhcc---CCCCEEEEec----C-----------CC------ccccceEEE------
Q 044637 183 ----VQTLRISGDLSYYHSGVSKSLCQL---HKLECLKLVN----E-----------GN------MRQLSRMIL------ 228 (370)
Q Consensus 183 ----L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~l~~----~-----------~~------~~~L~~L~l------ 228 (370)
|+.|+++++. .....+..+... ..+..+.+.. . .. ..+++.|.+
T Consensus 202 ~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 202 RNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 7788887763 222233222211 2233333320 0 00 002333333
Q ss_pred -----ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe
Q 044637 229 -----SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM 303 (370)
Q Consensus 229 -----~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 303 (370)
.+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+.. +.. +..+++|+.|+++++ .+..++.
T Consensus 280 ~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~N-~i~~~~~ 355 (844)
T 3j0a_A 280 SLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSN-FYGLPKVAYIDLQKN-HIAIIQD 355 (844)
T ss_dssp EECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCS-CSSCTTCCEEECCSC-CCCCCCS
T ss_pred ccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHH-hcCCCCCCEEECCCC-CCCccCh
Confidence 35567 78888888888877766777788888888888888775433 333 677888888888885 4665554
Q ss_pred -CCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 304 -GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 304 -~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
.+..+++|+.|++++|... .++ .+++|+.|++.+|.
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~-~i~----~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALT-TIH----FIPSIPDIFLSGNK 392 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSC-CCS----SCCSCSEEEEESCC
T ss_pred hhhcCCCCCCEEECCCCCCC-ccc----CCCCcchhccCCCC
Confidence 4677888888888887633 332 25566666666553
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.2e-24 Score=196.05 Aligned_cols=230 Identities=15% Similarity=0.185 Sum_probs=172.0
Q ss_pred hhHHHhccCCeeeEEEcCC-CCcc-cCCcccCCcCCCcEEeeCCCCCc-ccChhhhcCCCCcEEecCCCcCc-cccHHHh
Q 044637 57 QCENFCKKFKHLRVLNLGS-AVLD-QYPPGLENFFYLKYLKLNIPSLK-CLPSLLCTLINLQTLEMPSSYID-HSPEDIW 132 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~i~ 132 (370)
.++..+.++++|++|++++ +.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4566789999999999995 7777 88999999999999999999998 88999999999999999999776 7888999
Q ss_pred ccccCcEEEccCCcC-CCCCCCCCCCCC-CCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCC
Q 044637 133 MMLKLMHLNFGSITL-PAPPKNNSSTLK-NLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHK 208 (370)
Q Consensus 133 ~l~~L~~L~l~~~~~-~~~~~~~l~~l~-~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 208 (370)
.+++|++|+++ +|. .+.+|..+++++ +|++|++.++. ...|..+..++ |+.|+++++. ..+..+..+..+++
T Consensus 147 ~l~~L~~L~L~-~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~--l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 147 SLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM--LEGDASVLFGSDKN 222 (313)
T ss_dssp GCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE--EEECCGGGCCTTSC
T ss_pred cCCCCCeEECc-CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc--ccCcCCHHHhcCCC
Confidence 99999999999 666 447888999998 99999988777 57788888887 9999999995 55555656655555
Q ss_pred CCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCcccc
Q 044637 209 LECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLK 288 (370)
Q Consensus 209 L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 288 (370)
|+. |++++|.+.+..+ .+..+++|++|++++|.+.+.. +.. +..+++|+
T Consensus 223 L~~----------------------------L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-p~~-l~~l~~L~ 271 (313)
T 1ogq_A 223 TQK----------------------------IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL-PQG-LTQLKFLH 271 (313)
T ss_dssp CSE----------------------------EECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECC-CGG-GGGCTTCC
T ss_pred CCE----------------------------EECCCCceeeecC-cccccCCCCEEECcCCcccCcC-ChH-HhcCcCCC
Confidence 444 4555554433322 2455666666666666655432 233 45566666
Q ss_pred EEEecCCCCCc-eeEeCCCCCCCcceEeecCCcccC
Q 044637 289 ILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLR 323 (370)
Q Consensus 289 ~L~l~~~~~l~-~i~~~~~~l~~L~~L~l~~c~~l~ 323 (370)
+|+++++ .+. .+|. .+.+++|+.+++.+|+.+.
T Consensus 272 ~L~Ls~N-~l~~~ip~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 272 SLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred EEECcCC-cccccCCC-CccccccChHHhcCCCCcc
Confidence 6666664 344 4443 3666677777777666444
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-23 Score=189.24 Aligned_cols=240 Identities=19% Similarity=0.208 Sum_probs=123.8
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCccc---cHHHhccccCcEEEccC
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDHS---PEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~ 144 (370)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls- 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS- 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-
Confidence 345666666666665443 4667777777766666543 46667777777776655433 4555666777777776
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC-CCCc--cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcc
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG-SCTP--DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 221 (370)
++....+|..+..+++|++|++.++. ...+ ..+..+++|+.|+++++. .....+..+..+++|+.|++++..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~--- 161 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNS--- 161 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCE---
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCc---
Confidence 55544455556666666666655555 2222 345666677777776664 333333344444444444443300
Q ss_pred ccce--EEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCc
Q 044637 222 QLSR--MILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLE 299 (370)
Q Consensus 222 ~L~~--L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 299 (370)
+.. +.-.+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. ... +..+++|+.|+++++. +.
T Consensus 162 -l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~N~-l~ 236 (306)
T 2z66_A 162 -FQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFP-YKCLNSLQVLDYSLNH-IM 236 (306)
T ss_dssp -EGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGG-GTTCTTCCEEECTTSC-CC
T ss_pred -cccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhh-ccCcccCCEeECCCCC-Cc
Confidence 000 00023334 55555555555554444444555555555555555544322 111 3444555555555532 32
Q ss_pred -eeEeCCCCCC-CcceEeecCCcc
Q 044637 300 -EWTMGAGAMP-KLESLILNPCAY 321 (370)
Q Consensus 300 -~i~~~~~~l~-~L~~L~l~~c~~ 321 (370)
..+..+..++ +|+.|++++|+.
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCHHHHHhhhccCCEEEccCCCe
Confidence 2223344442 455555555543
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=189.95 Aligned_cols=246 Identities=15% Similarity=0.143 Sum_probs=142.7
Q ss_pred CeeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEc
Q 044637 66 KHLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNF 142 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 142 (370)
++|++|++++|.++.++. .+..+++|++|++++|.++.+ |..++++++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 467777887777774444 677777788888877777755 44577777788888877777777655 667777788877
Q ss_pred cCCcCCCCCCC--CCCCCCCCceeccccCC--CCC-ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC
Q 044637 143 GSITLPAPPKN--NSSTLKNLIFISALHPG--SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 217 (370)
Q Consensus 143 ~~~~~~~~~~~--~l~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 217 (370)
+ ++....+|. .+..+++|++|++.++. ... +..+..+++|+.|+++++. .....+..+..+
T Consensus 132 ~-~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l----------- 197 (353)
T 2z80_A 132 L-GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSI----------- 197 (353)
T ss_dssp T-TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTC-----------
T ss_pred C-CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhcc-----------
Confidence 7 665555554 56677777777766663 222 3456667777777777764 333334444444
Q ss_pred CCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEe-cCCCCccccEEEecCCC
Q 044637 218 GNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCV-GCSSFPQLKILHLKSML 296 (370)
Q Consensus 218 ~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 296 (370)
++|++|++++|.+.......++.+++|+.|++++|.+.+...... .....+.++.+.+.++
T Consensus 198 -----------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~- 259 (353)
T 2z80_A 198 -----------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV- 259 (353)
T ss_dssp -----------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-
T ss_pred -----------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-
Confidence 455555555554422211223345555555555555543221100 0112344555555543
Q ss_pred CCc-----eeEeCCCCCCCcceEeecCCcccCCCchhc-ccCCCCcEEEecCCC
Q 044637 297 WLE-----EWTMGAGAMPKLESLILNPCAYLRKLPEEL-WCIKSLCKLELHWPQ 344 (370)
Q Consensus 297 ~l~-----~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~~~ 344 (370)
.+. .+|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++.+|+
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 222 234444556666666666665 33555543 556666666666654
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.4e-22 Score=199.91 Aligned_cols=269 Identities=22% Similarity=0.232 Sum_probs=151.5
Q ss_pred eeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcc-cChhhhcCCCCcEEecCCCcCc------cccH----HHhccc
Q 044637 68 LRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKC-LPSLLCTLINLQTLEMPSSYID------HSPE----DIWMML 135 (370)
Q Consensus 68 L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~------~lp~----~i~~l~ 135 (370)
|++|++++|.++ ..|..++.+++|++|++++|.+.. .|..++.+++|++|+++++... .+|. .++.++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 777777777666 334556667777777777776663 3445666666666666654221 2222 345566
Q ss_pred cCcEEEccCCcC-CCCCCCCCCCCCCCceeccccC----------------------------C--CCCccccCCCCCcc
Q 044637 136 KLMHLNFGSITL-PAPPKNNSSTLKNLIFISALHP----------------------------G--SCTPDILGRLPNVQ 184 (370)
Q Consensus 136 ~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~----------------------------~--~~~~~~l~~l~~L~ 184 (370)
+|++|+++ ++. ....+..+..+++|++|++.++ . ...+..+..+++|+
T Consensus 330 ~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 330 CLEHLNME-DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TCCEEECC-SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECC-CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 66666666 444 3333344555666666654432 1 11233455666666
Q ss_pred EEEEecccccchhcHH-HhhhccCCCCEEEEecCC------Ccc----ccceEEE-------------ecCCCCCCceEE
Q 044637 185 TLRISGDLSYYHSGVS-KSLCQLHKLECLKLVNEG------NMR----QLSRMIL-------------SEYKFPPSLTQL 240 (370)
Q Consensus 185 ~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~------~~~----~L~~L~l-------------~~~~~p~~L~~L 240 (370)
.|+++++. ..+.++ ..+..+++|+.|++++.. ..+ +++.|.+ ++..+ ++|++|
T Consensus 409 ~L~L~~N~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L 485 (680)
T 1ziw_A 409 VLDLGLNE--IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTIL 485 (680)
T ss_dssp EEECCSSC--CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC-TTCCEE
T ss_pred EEeCCCCc--CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC-CCCCEE
Confidence 77666664 333333 455666666666665510 011 3444444 23445 677888
Q ss_pred EEeccCCCCCCcccccCCCCCCeEEeecccccCce-------eEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcc
Q 044637 241 SLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERK-------LVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLE 312 (370)
Q Consensus 241 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~ 312 (370)
++++|.+.+..+..++.+++|+.|++++|.+.+.. .... +..+++|+.|+++++ .++++|. .++.+++|+
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESN-GFDEIPVEVFKDLFELK 563 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh-hcCCCCCCEEECCCC-CCCCCCHHHcccccCcc
Confidence 88877776655556777777777777777665321 0111 455666777777763 4566654 356666666
Q ss_pred eEeecCCcccCCCch-hcccCCCCcEEEecCC
Q 044637 313 SLILNPCAYLRKLPE-ELWCIKSLCKLELHWP 343 (370)
Q Consensus 313 ~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~ 343 (370)
.|++++|... .+|. .+..+++|+.|++.+|
T Consensus 564 ~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 564 IIDLGLNNLN-TLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred eeECCCCCCC-cCCHhHhCCCCCCCEEECCCC
Confidence 6666666533 3433 3355566666666655
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.6e-22 Score=199.30 Aligned_cols=124 Identities=21% Similarity=0.162 Sum_probs=62.9
Q ss_pred eeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEcc
Q 044637 67 HLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFG 143 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 143 (370)
.+++|+|++|.|+.+| ..|..+++|++|+|++|.++.+|. .|+++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 4555555555555333 345555555555555555554432 355555555555555555555432 4455555555555
Q ss_pred CCcCCCCCCC-CCCCCCCCceeccccCC---CCCccccCCCCCccEEEEecc
Q 044637 144 SITLPAPPKN-NSSTLKNLIFISALHPG---SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 144 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~ 191 (370)
+|....++. .++++++|++|++.++. ...+..++.+++|+.|+++++
T Consensus 133 -~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 133 -ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp -TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred -CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 444333332 34555555555554444 123444455555555555544
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=8.9e-23 Score=183.23 Aligned_cols=222 Identities=20% Similarity=0.247 Sum_probs=183.0
Q ss_pred CCeeeEEEcCCCCcccCCcc-cCCcCCCcEEeeCCCCCccc---ChhhhcCCCCcEEecCCCcCccccHHHhccccCcEE
Q 044637 65 FKHLRVLNLGSAVLDQYPPG-LENFFYLKYLKLNIPSLKCL---PSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHL 140 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 140 (370)
.+++++|++++|.++.+|.. +..+++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 36899999999999977765 68999999999999998854 678888999999999999888898888999999999
Q ss_pred EccCCcCCCCCC--CCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchh-cHHHhhhccCCCCEEEEe
Q 044637 141 NFGSITLPAPPK--NNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHS-GVSKSLCQLHKLECLKLV 215 (370)
Q Consensus 141 ~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~ 215 (370)
+++ ++....++ ..+..+++|++|++.++. ...+..+..+++|+.|+++++. ..+ ..+..+..+++|+.|+++
T Consensus 107 ~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 107 DFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp ECT-TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECT
T ss_pred ECC-CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECC
Confidence 999 76644444 468899999999988877 4556678899999999999985 444 577888999999999998
Q ss_pred cCCCccccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCc-cccEEEec
Q 044637 216 NEGNMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFP-QLKILHLK 293 (370)
Q Consensus 216 ~~~~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~ 293 (370)
+.. +..+.. ++..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +.. +..++ +|++|+++
T Consensus 184 ~n~----l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 184 QCQ----LEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQE-LQHFPSSLAFLNLT 256 (306)
T ss_dssp TSC----CCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSS-CCCCCTTCCEEECT
T ss_pred CCC----cCCcCHHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHH-HHhhhccCCEEEcc
Confidence 722 222211 45677 89999999999988777777899999999999999887654 233 56674 89999999
Q ss_pred CCC
Q 044637 294 SML 296 (370)
Q Consensus 294 ~~~ 296 (370)
+++
T Consensus 257 ~N~ 259 (306)
T 2z66_A 257 QND 259 (306)
T ss_dssp TCC
T ss_pred CCC
Confidence 964
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.7e-21 Score=184.14 Aligned_cols=253 Identities=21% Similarity=0.213 Sum_probs=128.2
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
++|++|++++|.++.+|.. .++|++|++++|.++.+| .++.+++|++|++++|.+..+|.. ..+|++|+++ +
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~-~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAG-N 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECC-S
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECc-C
Confidence 4555555555555433321 145666666666666665 466666666666666655555532 2356666666 4
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC---C--C
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE---G--N 219 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~--~ 219 (370)
+....+| .++++++|++|++.++. ..++.. .++|+.|++++|. ...+| .++.+++|+.|++++. + .
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~---l~~lp-~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI---LEELP-ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc---CCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence 4444444 35555666665555444 322221 1345555555542 12333 2444555555555440 0 0
Q ss_pred c-cccceEEE------ecCCCCCCceEEEEeccCCCC--CCccc-------------ccCC-CCCCeEEeecccccCcee
Q 044637 220 M-RQLSRMIL------SEYKFPPSLTQLSLSNTELME--DPMPT-------------LEEL-PHLEVLKLKQNSYLERKL 276 (370)
Q Consensus 220 ~-~~L~~L~l------~~~~~p~~L~~L~l~~~~~~~--~~~~~-------------l~~l-~~L~~L~l~~~~~~~~~~ 276 (370)
. -+++.|.+ .+...|++|++|++++|.+.+ ..|.. +..+ ++|+.|++++|.+.+ +
T Consensus 255 ~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~--l 332 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--L 332 (454)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC--C
T ss_pred cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc--c
Confidence 0 02333333 111111344444444444332 11111 1223 478888888777664 2
Q ss_pred EEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccC--CCchhcccC-------------CCCcEEEec
Q 044637 277 VCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR--KLPEELWCI-------------KSLCKLELH 341 (370)
Q Consensus 277 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l-------------~~L~~L~l~ 341 (370)
+ ..+++|+.|++++| .++.+|. .+++|+.|++++|.... .+|..+..+ ++|+.|+++
T Consensus 333 p----~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 333 P----ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp C----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred c----ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 2 23678999999885 5777776 57899999999998776 688888777 789999999
Q ss_pred CCC
Q 044637 342 WPQ 344 (370)
Q Consensus 342 ~~~ 344 (370)
+|+
T Consensus 405 ~N~ 407 (454)
T 1jl5_A 405 TNP 407 (454)
T ss_dssp ---
T ss_pred CCc
Confidence 886
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.7e-21 Score=184.39 Aligned_cols=240 Identities=17% Similarity=0.139 Sum_probs=136.4
Q ss_pred eeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCcccc-HHHhccccCcEEEccCC
Q 044637 68 LRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSP-EDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 68 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~ 145 (370)
.+.++.++..++.+|..+. +++++|++++|.++.+ |..++++++|++|++++|.+..++ ..+..+++|++|+++ +
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF-D 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-S
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC-C
Confidence 4566777777777776554 5778888888877755 556777888888888877666555 456677788888887 6
Q ss_pred cCCCCCCC-CCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 146 TLPAPPKN-NSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 146 ~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
|....++. .+..+++|++|++.++. ..++ ..+..+++|+.|+++++. ....++..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~-------------------- 190 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEG-------------------- 190 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTT--------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChh--------------------
Confidence 55445543 36667777777766665 3332 345667777777777643 22222211
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT 302 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 302 (370)
.+..+ ++|++|++++|.+.+. +.+..+++|+.|++++|.+.+.. +.. +..+++|+.|+++++ .+..++
T Consensus 191 ------~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~n-~l~~~~ 258 (452)
T 3zyi_A 191 ------AFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIR-PGS-FHGLSSLKKLWVMNS-QVSLIE 258 (452)
T ss_dssp ------TTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEEC-GGG-GTTCTTCCEEECTTS-CCCEEC
T ss_pred ------hccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccC-ccc-ccCccCCCEEEeCCC-cCceEC
Confidence 12233 4555555555544321 23455555555555555554322 222 445555666666553 344432
Q ss_pred -eCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 303 -MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 303 -~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
..+..+++|+.|++++|......+..+..+++|+.|++.+||
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 234555566666666654332222334555566666665543
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-23 Score=187.41 Aligned_cols=243 Identities=16% Similarity=0.058 Sum_probs=148.5
Q ss_pred hhHHHhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccc
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMML 135 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 135 (370)
.....+..+++|++|++++|.++.++ ..+..+++|++|++++|.+...+. ++.+++|++|++++|.+..++ ..+
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~ 99 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGP 99 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCC
Confidence 34566677889999999999988554 678899999999999999886664 888999999999999877766 348
Q ss_pred cCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCC-ccccCCCCCccEEEEecccccchhcHHHhh-hccCCCCEE
Q 044637 136 KLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSL-CQLHKLECL 212 (370)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L 212 (370)
+|++|+++ ++....++. ..+++|++|++.++. ... +..+..+++|+.|+++++. .....+..+ ..+++|+.|
T Consensus 100 ~L~~L~l~-~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 100 SIETLHAA-NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp TCCEEECC-SSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEE
T ss_pred CcCEEECC-CCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEE
Confidence 89999999 666444432 236778888877766 333 3456677788888888774 333333333 244555555
Q ss_pred EEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEe
Q 044637 213 KLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHL 292 (370)
Q Consensus 213 ~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 292 (370)
+++ +|.+... .....+++|+.|++++|.+.+ ++.. +..+++|+.|++
T Consensus 175 ~L~----------------------------~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--l~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 175 NLQ----------------------------YNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPE-FQSAAGVTWISL 221 (317)
T ss_dssp ECT----------------------------TSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGG-GGGGTTCSEEEC
T ss_pred ECC----------------------------CCcCccc--ccccccccCCEEECCCCcCCc--chhh-hcccCcccEEEC
Confidence 554 4433221 112234555555555554432 1122 334455555555
Q ss_pred cCCCCCceeEeCCCCCCCcceEeecCCccc-CCCchhcccCCCCcEEEecCC
Q 044637 293 KSMLWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 293 ~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~~ 343 (370)
++| .++.+|..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.++
T Consensus 222 ~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 222 RNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 552 34455544555555555555555543 234444444555555444433
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.3e-21 Score=181.78 Aligned_cols=239 Identities=16% Similarity=0.124 Sum_probs=136.8
Q ss_pred eeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCcccc-HHHhccccCcEEEccCC
Q 044637 68 LRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSP-EDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 68 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~ 145 (370)
.+.++.++..++.+|..+. +++++|++++|.+..++ ..+.++++|++|++++|.+..++ ..+..+++|++|+++ +
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF-D 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC-S
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC-C
Confidence 4567777777777777664 57888888888887554 56778888888888888776655 456778888888888 6
Q ss_pred cCCCCCCC-CCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHH-hhhccCCCCEEEEecCCCcc
Q 044637 146 TLPAPPKN-NSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSK-SLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 146 ~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~ 221 (370)
|....++. .+..+++|++|++.++. ..++ ..+..+++|+.|+++++. ....++. .+..+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l--------------- 184 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGL--------------- 184 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTC---------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcc---------------
Confidence 66555544 46677777777766665 3332 346667777777777653 2222222 23333
Q ss_pred ccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCcee
Q 044637 222 QLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEW 301 (370)
Q Consensus 222 ~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 301 (370)
++|++|++++|.+.. .| .+..+++|+.|++++|.+.+.. +.. +..+++|+.|+++++ .++.+
T Consensus 185 -------------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~n-~l~~~ 246 (440)
T 3zyj_A 185 -------------SNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIR-PGS-FQGLMHLQKLWMIQS-QIQVI 246 (440)
T ss_dssp -------------SSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECTTC-CCCEE
T ss_pred -------------cccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccC-hhh-hccCccCCEEECCCC-ceeEE
Confidence 444444454444322 11 2445555555555555443321 122 444555555555553 34443
Q ss_pred E-eCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 302 T-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 302 ~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+ ..+..+++|+.|++++|......+..+..+++|+.|++.+||
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 3 234455555555555554332222334455555555555543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=3e-22 Score=177.90 Aligned_cols=215 Identities=16% Similarity=0.112 Sum_probs=109.8
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccCCc
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGSIT 146 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 146 (370)
++++.+++.++.+|..+ .++|++|+++++.++.++ ..++.+++|++|++++|.+..+ |..+..+++|++|+++ ++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-DN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC-CC
Confidence 45555555555555433 346666666666666544 3456666666666666655444 3455566666666666 44
Q ss_pred C-CCCC-CCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 147 L-PAPP-KNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 147 ~-~~~~-~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
. ...+ +..+..+++|++|++.++. ...+..+..+++|+.|+++++. .....+..+..+++|+.|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~---- 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNR---- 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCc----
Confidence 3 3333 4455566666666655555 2223445556666666666653 222222234444444444444311
Q ss_pred cceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCC
Q 044637 223 LSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSM 295 (370)
Q Consensus 223 L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 295 (370)
++.+.- .+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +.. +..+++|+.|+++++
T Consensus 165 l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 165 ISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEA-LAPLRALQYLRLNDN 235 (285)
T ss_dssp CCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHH-HTTCTTCCEEECCSS
T ss_pred ccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHH-cccCcccCEEeccCC
Confidence 111110 23334 55555555555555544555555566666666655554322 112 345555666666553
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.5e-23 Score=188.88 Aligned_cols=244 Identities=20% Similarity=0.157 Sum_probs=143.6
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCc--ccChhhh-------cCCCCcEEecCCCcCc-cccHHH-
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLK--CLPSLLC-------TLINLQTLEMPSSYID-HSPEDI- 131 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~~~-~lp~~i- 131 (370)
...++|+.|++++|.+ .+|..+... |++|+++++.+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3445555666666655 455444332 566666665553 3444443 4566666666666443 444443
Q ss_pred -hccccCcEEEccCCcCCCCCCCCCCCC-----CCCceeccccCC-CCC-ccccCCCCCccEEEEecccccchhc--HHH
Q 044637 132 -WMMLKLMHLNFGSITLPAPPKNNSSTL-----KNLIFISALHPG-SCT-PDILGRLPNVQTLRISGDLSYYHSG--VSK 201 (370)
Q Consensus 132 -~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~--~~~ 201 (370)
+.+++|++|+++ ++.....|..++.+ ++|++|++.++. ... +..++.+++|+.|++++|. ..+. ++.
T Consensus 117 ~~~l~~L~~L~Ls-~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~ 193 (312)
T 1wwl_A 117 EATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLIS 193 (312)
T ss_dssp SCCSCCCSEEEEE-SCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHH
T ss_pred HhcCCCccEEEcc-CCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC--cCcchHHHH
Confidence 556666666666 44433334444443 556666655554 222 2456666666666666663 2222 222
Q ss_pred hhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCC--CCc-ccccCCCCCCeEEeecccccCceeEE
Q 044637 202 SLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELME--DPM-PTLEELPHLEVLKLKQNSYLERKLVC 278 (370)
Q Consensus 202 ~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 278 (370)
.+ .+..+ ++|++|++++|.+.+ ..+ ..+..+++|+.|++++|.+.+.....
T Consensus 194 ~~-------------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 194 AL-------------------------CPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp HS-------------------------CTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HH-------------------------HhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 22 12345 677777777776642 112 22356788888888888777644222
Q ss_pred ecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 279 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 279 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
. ...+++|++|++++| .++++|..+. ++|+.|++++|. ++.+|. +..+++|++|++.+++
T Consensus 248 ~-~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 S-CDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp C-CCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred h-hhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 2 455678888888884 5777776555 788888888887 444566 7788888888888886
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=1.8e-21 Score=191.77 Aligned_cols=111 Identities=20% Similarity=0.159 Sum_probs=91.4
Q ss_pred HHHhccCCeeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccH-HHhccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPE-DIWMML 135 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~ 135 (370)
+..|..+++|++|+|++|.++.+++ .|..+++|++|+|++|+++.+|. .++++++|++|++++|.+..+|. .+++++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 3567899999999999999986654 68899999999999999998875 57899999999999998888875 378899
Q ss_pred cCcEEEccCCcC--CCCCCCCCCCCCCCceeccccCC
Q 044637 136 KLMHLNFGSITL--PAPPKNNSSTLKNLIFISALHPG 170 (370)
Q Consensus 136 ~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 170 (370)
+|++|+++ ++. ....|..++.+++|++|++.++.
T Consensus 149 ~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 149 TLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCeeccc-cCccccCCCchhhccchhhhhhcccCcc
Confidence 99999999 655 33456777888888888866554
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.3e-20 Score=183.73 Aligned_cols=243 Identities=22% Similarity=0.179 Sum_probs=166.9
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
.++++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|+++ +
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls-~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF-S 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC-S
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc-C
Confidence 357788888888777777665 678888888888777775 56778888888887777775 56778888887 6
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC-Cc---
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG-NM--- 220 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~--- 220 (370)
|....+|. .+++|+.|++.++. ..+|.. +++|+.|++++|. ...++. .+++|+.|+++++. ..
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~N~l~~l~~ 178 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ---LASLPA---LPSELCKLWAYNNQLTSLPM 178 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSSCCSCCCC
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc---CCCcCC---ccCCCCEEECCCCCCCCCcc
Confidence 66555555 45677777766665 444443 3667777777763 222222 12345555444310 00
Q ss_pred --cccceEEE------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEe
Q 044637 221 --RQLSRMIL------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHL 292 (370)
Q Consensus 221 --~~L~~L~l------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 292 (370)
-+|+.|.+ .+...+++|+.|++++|.+.. .+. .+++|+.|++++|.+.+ ++ ..+++|+.|++
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~--lp----~~l~~L~~L~L 248 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS--LP----VLPSELKELMV 248 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC--CC----CCCTTCCEEEC
T ss_pred cCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc--CC----CCCCcCcEEEC
Confidence 02333333 122223678888888887643 332 35889999999988865 22 35689999999
Q ss_pred cCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 293 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 293 ~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++| .++.+|. .+++|+.|++++|. ++.+|..+..+++|+.|++.+|+
T Consensus 249 s~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 249 SGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 995 6888876 78999999999997 55899999999999999999997
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=5.4e-22 Score=179.05 Aligned_cols=235 Identities=15% Similarity=0.090 Sum_probs=182.8
Q ss_pred CeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEcc
Q 044637 66 KHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 143 (370)
..++..+++++.+. .....+..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45777888888876 33344566789999999999999775 679999999999999998876664 8899999999999
Q ss_pred CCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 144 SITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 144 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
+|....++ ..++|++|++.++. ...+. ..+++|+.|+++++. .....+.
T Consensus 89 -~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~--l~~~~~~--------------------- 138 (317)
T 3o53_A 89 -NNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDL--------------------- 138 (317)
T ss_dssp -SSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC--CCSGGGB---------------------
T ss_pred -CCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCC--CCCccch---------------------
Confidence 66544333 34788888877766 33332 346778888888874 2222121
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccc-cCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCcee
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTL-EELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEW 301 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 301 (370)
.+..+ ++|++|++++|.+.+..+..+ +.+++|++|++++|.+.+. + . ...+++|++|++++| .++.+
T Consensus 139 ------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~-~-~~~l~~L~~L~Ls~N-~l~~l 206 (317)
T 3o53_A 139 ------DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSN-KLAFM 206 (317)
T ss_dssp ------CTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E-C-CCCCTTCCEEECCSS-CCCEE
T ss_pred ------hhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--c-c-ccccccCCEEECCCC-cCCcc
Confidence 23345 888889998888876656655 4789999999999988653 2 2 446899999999995 68899
Q ss_pred EeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 302 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 302 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+..+..+++|+.|++++|. ++.+|..+..+++|+.|++.+|+
T Consensus 207 ~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred hhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 8888999999999999997 55788889999999999999987
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=181.69 Aligned_cols=220 Identities=18% Similarity=0.155 Sum_probs=164.3
Q ss_pred CeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEc
Q 044637 66 KHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNF 142 (370)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l 142 (370)
+++++|+|++|.++ ..+..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67999999999998 44578999999999999999999765 678999999999999998888885 4789999999999
Q ss_pred cCCcCCCCCC-CCCCCCCCCceeccccCC--CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC
Q 044637 143 GSITLPAPPK-NNSSTLKNLIFISALHPG--SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 218 (370)
Q Consensus 143 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 218 (370)
+ ++....++ ..+.++++|++|++.+++ ..++ ..+..+++|+.|++++|. ...+| .+
T Consensus 144 ~-~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~-~~--------------- 203 (440)
T 3zyj_A 144 R-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---LREIP-NL--------------- 203 (440)
T ss_dssp C-SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---CSSCC-CC---------------
T ss_pred C-CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---Ccccc-cc---------------
Confidence 9 77655554 468899999999988766 3333 357889999999999984 22332 12
Q ss_pred CccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 219 NMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 219 ~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. +.. +..+++|+.|+|+++ .+
T Consensus 204 ------------~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l 267 (440)
T 3zyj_A 204 ------------TPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNA-FDNLQSLVEINLAHN-NL 267 (440)
T ss_dssp ------------TTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTS-STTCTTCCEEECTTS-CC
T ss_pred ------------CCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhh-hcCCCCCCEEECCCC-CC
Confidence 234 66677777777666655666777777777777776665432 222 556677777777773 46
Q ss_pred ceeEeC-CCCCCCcceEeecCCcc
Q 044637 299 EEWTMG-AGAMPKLESLILNPCAY 321 (370)
Q Consensus 299 ~~i~~~-~~~l~~L~~L~l~~c~~ 321 (370)
+.++.. +..+++|+.|++++|+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhHhccccCCCEEEcCCCCc
Confidence 665543 45677777777777663
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=3.6e-21 Score=182.20 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=164.0
Q ss_pred CeeeEEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEc
Q 044637 66 KHLRVLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNF 142 (370)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 142 (370)
+++++|+|++|.++ ..+..|..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 68999999999998 55678999999999999999999664 6799999999999999988888865 778999999999
Q ss_pred cCCcCCCCCC-CCCCCCCCCceeccccCC--CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC
Q 044637 143 GSITLPAPPK-NNSSTLKNLIFISALHPG--SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 218 (370)
Q Consensus 143 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 218 (370)
+ +|....++ ..+.++++|++|++.+++ ..++ ..+..+++|+.|++++|. ...++ .+
T Consensus 155 ~-~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~-~~--------------- 214 (452)
T 3zyi_A 155 R-NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN---IKDMP-NL--------------- 214 (452)
T ss_dssp C-SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC---CSSCC-CC---------------
T ss_pred C-CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc---ccccc-cc---------------
Confidence 9 77755555 468899999999988766 3333 357889999999999984 22222 12
Q ss_pred CccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 219 NMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 219 ~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. +.. +..+++|+.|+|+++ .+
T Consensus 215 ------------~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 215 ------------TPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNA-FDGLASLVELNLAHN-NL 278 (452)
T ss_dssp ------------TTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECCSS-CC
T ss_pred ------------ccc-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHH-hcCCCCCCEEECCCC-cC
Confidence 234 66667777777666666666777777777777766665432 222 556677777777774 46
Q ss_pred ceeEeC-CCCCCCcceEeecCCcc
Q 044637 299 EEWTMG-AGAMPKLESLILNPCAY 321 (370)
Q Consensus 299 ~~i~~~-~~~l~~L~~L~l~~c~~ 321 (370)
+.++.. +..+++|+.|++++|+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccChHHhccccCCCEEEccCCCc
Confidence 655543 45677777777777663
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=4e-20 Score=174.71 Aligned_cols=250 Identities=21% Similarity=0.199 Sum_probs=175.7
Q ss_pred CCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccC
Q 044637 65 FKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGS 144 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 144 (370)
.++|++|++++|.++.+|.. +.+|++|++++|.++.+|.. .++|++|++++|.+..+| .++.+++|++|+++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~- 161 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD- 161 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC-
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECC-
Confidence 36799999999988877754 47899999999999877642 269999999999888898 69999999999999
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC-C---
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG-N--- 219 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~--- 219 (370)
++....+|..+ .+|++|++.++. ..++ .++.+++|+.|++++|. ...+|.. .++|+.|++++.. .
T Consensus 162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~---l~~l~~~---~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 162 NNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS---LKKLPDL---PLSLESIVAGNNILEELP 231 (454)
T ss_dssp SSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC---CSSCCCC---CTTCCEEECCSSCCSSCC
T ss_pred CCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc---CCcCCCC---cCcccEEECcCCcCCccc
Confidence 77766677643 589999988888 5565 68999999999999984 3333332 2589999998721 0
Q ss_pred cc----ccceEEE------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCce-eEEe---------
Q 044637 220 MR----QLSRMIL------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERK-LVCV--------- 279 (370)
Q Consensus 220 ~~----~L~~L~l------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~--------- 279 (370)
.+ +++.|.+ .+...|++|++|++++|.+.+ .|.. +++|+.|++++|.+.+.. .+..
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 01 5566655 111223677777777776644 3322 366777777766654410 0000
Q ss_pred ---cCCCC-ccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 280 ---GCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 280 ---~~~~~-~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++..+ ++|+.|+++++ .++.+|.. +++|+.|++++|. ++.+|. .+++|++|++.+|+
T Consensus 308 ~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 308 EIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred cCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCCCC
Confidence 01122 46777777773 46665542 5888889988886 446777 47889999999886
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.2e-22 Score=189.99 Aligned_cols=235 Identities=17% Similarity=0.093 Sum_probs=149.1
Q ss_pred ccCCeeeEEEcCCCCcccC-CcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 63 KKFKHLRVLNLGSAVLDQY-PPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
..+++|++|+|++|.++.+ |..+..+++|++|++++|.+...+. ++.+++|++|++++|.+..+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4455999999999999854 5689999999999999999986654 8999999999999998887764 48999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhh-ccCCCCEEEEecCC
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLC-QLHKLECLKLVNEG 218 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 218 (370)
++ +|....++. ..+++|+.|++.++. ...+..++.+++|+.|++++|. ..+..|..+. .+++|+.|+++++.
T Consensus 106 L~-~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AA-NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CC-SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred Cc-CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCCCc
Confidence 99 766544443 246788888887777 3345567788888888888885 5554555554 56666666665411
Q ss_pred CccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 219 NMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 219 ~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
+..+. ....+ ++|++|++++|.+.+. +..++.+++|+.|++++|.+.+ ++.. +..+++|+.|++++++..
T Consensus 181 ----l~~~~-~~~~l-~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~--lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 ----IYDVK-GQVVF-AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL--IEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ----CCEEE-CCCCC-TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE--ECTT-CCCCTTCCEEECTTCCBC
T ss_pred ----ccccc-ccccC-CCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc--cchh-hccCCCCCEEEcCCCCCc
Confidence 11111 12223 5555555555554332 2234455555555555555442 2222 344455555555553321
Q ss_pred -ceeEeCCCCCCCcceEeec
Q 044637 299 -EEWTMGAGAMPKLESLILN 317 (370)
Q Consensus 299 -~~i~~~~~~l~~L~~L~l~ 317 (370)
..+|..+..++.|+.+.+.
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 1333334444555554443
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=175.58 Aligned_cols=232 Identities=17% Similarity=0.113 Sum_probs=175.2
Q ss_pred HHhccCCeeeEEEcCCCCccc-CCcccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCccccH--HHhccc
Q 044637 60 NFCKKFKHLRVLNLGSAVLDQ-YPPGLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDHSPE--DIWMML 135 (370)
Q Consensus 60 ~~~~~~~~L~~L~L~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~lp~--~i~~l~ 135 (370)
..+.++++|++|++++|.++. .|..+..+++|++|++++|.++.+|.. ++++++|++|++++|.+..+|. .+..++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 357899999999999999984 456799999999999999999998876 8999999999999998888886 678999
Q ss_pred cCcEEEccCCc-CCCCC-CCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhh-hccCCCC
Q 044637 136 KLMHLNFGSIT-LPAPP-KNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSL-CQLHKLE 210 (370)
Q Consensus 136 ~L~~L~l~~~~-~~~~~-~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~ 210 (370)
+|++|+++ ++ ....+ +..+.++++|++|++.++. ...+..+..+++|+.|+++++. ...++..+ ..+
T Consensus 150 ~L~~L~l~-~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~~---- 221 (353)
T 2z80_A 150 KLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ---HILLLEIFVDVT---- 221 (353)
T ss_dssp TCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC---STTHHHHHHHHT----
T ss_pred CCcEEECC-CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc---cccchhhhhhhc----
Confidence 99999999 66 44444 5678999999999988887 4447788999999999999984 44555443 334
Q ss_pred EEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCccc---ccCCCCCCeEEeecccccCce---eEEecCCCC
Q 044637 211 CLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT---LEELPHLEVLKLKQNSYLERK---LVCVGCSSF 284 (370)
Q Consensus 211 ~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~ 284 (370)
++|++|++++|.+.+..+.. ....+.++.+++..+.+.+.. ++.. +..+
T Consensus 222 ------------------------~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l 276 (353)
T 2z80_A 222 ------------------------SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQI 276 (353)
T ss_dssp ------------------------TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTC
T ss_pred ------------------------ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-Hhcc
Confidence 55555555555554433322 234566777777776665421 1222 4567
Q ss_pred ccccEEEecCCCCCceeEeCC-CCCCCcceEeecCCcccCCC
Q 044637 285 PQLKILHLKSMLWLEEWTMGA-GAMPKLESLILNPCAYLRKL 325 (370)
Q Consensus 285 ~~L~~L~l~~~~~l~~i~~~~-~~l~~L~~L~l~~c~~l~~l 325 (370)
++|+.|++++| .++.+|... +.+++|+.|++++|+.....
T Consensus 277 ~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 277 SGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 88888888884 577787764 78888888888888765543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=7e-21 Score=169.08 Aligned_cols=201 Identities=18% Similarity=0.199 Sum_probs=164.0
Q ss_pred CCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCc-Cccc-cHHHhccccCcEE
Q 044637 65 FKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSY-IDHS-PEDIWMMLKLMHL 140 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~~L 140 (370)
.+++++|++++|.++.++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999999554 5689999999999999999966 7789999999999999995 8777 5678899999999
Q ss_pred EccCCcCCCCC-CCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC
Q 044637 141 NFGSITLPAPP-KNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 217 (370)
Q Consensus 141 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 217 (370)
+++ ++....+ +..+.++++|++|++.++. ...+ ..++.+++|+.|+++++. .....+..+..+++|+.|++++.
T Consensus 111 ~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 111 HLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp ECT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS
T ss_pred ECC-CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCCC
Confidence 999 7664444 6678899999999988887 4444 447889999999999984 44333446888999999999872
Q ss_pred CCccccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccC
Q 044637 218 GNMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLE 273 (370)
Q Consensus 218 ~~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 273 (370)
. +..+.. ++..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+..
T Consensus 188 ~----l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 188 R----VAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp C----CCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred c----ccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 2 222111 56677 899999999999887777779999999999999998753
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.7e-21 Score=181.28 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=153.6
Q ss_pred CCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCcee
Q 044637 86 ENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFI 164 (370)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 164 (370)
..+++|++|++++|.+..++ ..++.+++|++|++++|.+...++ ++.+++|++|+++ +|....++ ..++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls-~N~l~~l~----~~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN-NNYVQELL----VGPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECC-SSEEEEEE----ECTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEec-CCcCCCCC----CCCCcCEE
Confidence 34569999999999999764 689999999999999998876654 8899999999999 76644444 23799999
Q ss_pred ccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEE-ecC-CCCCCceEEE
Q 044637 165 SALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMIL-SEY-KFPPSLTQLS 241 (370)
Q Consensus 165 ~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~-~~p~~L~~L~ 241 (370)
++.++. ...+. ..+++|+.|++++|. ..+..+..++.+++|+.|++++.. +..... .+. .+ ++|++|+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~~l-~~L~~L~ 175 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASS-DTLEHLN 175 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTSC----CCEEEGGGGGGGT-TTCCEEE
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCCC----CCCcChHHHhhhC-CcccEEe
Confidence 988877 44443 356889999999985 555555566777666666666511 111111 121 34 5666666
Q ss_pred EeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcc
Q 044637 242 LSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 321 (370)
Q Consensus 242 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~ 321 (370)
+++|.+.+. .....+++|+.|++++|.+++ ++.. +..+++|+.|++++| .+..+|..++.+++|+.|++++|+.
T Consensus 176 Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 176 LQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred cCCCccccc--cccccCCCCCEEECCCCCCCC--CCHh-HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 666665432 223346666666666666553 2222 445566666666663 4556666666666666666666664
Q ss_pred c-CCCchhcccCCCCcEEEec
Q 044637 322 L-RKLPEELWCIKSLCKLELH 341 (370)
Q Consensus 322 l-~~l~~~~~~l~~L~~L~l~ 341 (370)
. ..+|..+..+++|+.+.+.
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEecc
Confidence 4 2445555555555555553
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.3e-21 Score=187.74 Aligned_cols=282 Identities=13% Similarity=0.081 Sum_probs=168.5
Q ss_pred hhHHHhccCCeeeEEEcCCCCcc-c----CCcccCCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcCcc
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLD-Q----YPPGLENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYIDH 126 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~-~----~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~ 126 (370)
.+......+++|++|+|++|.++ . ++.....+++|++|+++++.++ .++..+..+++|++|++++|.+..
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 34555668899999999999865 2 3334456789999999998875 445566789999999999998878
Q ss_pred ccHHHhccccCcEEEccCCcC-C---CCCCCCCCCCCCCceeccccCC-CCCcccc------------------------
Q 044637 127 SPEDIWMMLKLMHLNFGSITL-P---APPKNNSSTLKNLIFISALHPG-SCTPDIL------------------------ 177 (370)
Q Consensus 127 lp~~i~~l~~L~~L~l~~~~~-~---~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l------------------------ 177 (370)
+|..+..+++|++|+++ ... . ...+..+..+++|+.|.+.... ..++..+
T Consensus 235 l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEEC-BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHhhhhHHHhhccc-ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 88888889999999987 432 1 1222334444455554443332 3333333
Q ss_pred -CCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec----------CCC----cc--------ccceEEE------
Q 044637 178 -GRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN----------EGN----MR--------QLSRMIL------ 228 (370)
Q Consensus 178 -~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~----~~--------~L~~L~l------ 228 (370)
..+++|+.|++.++. ....++.....+++|+.|++.. ... .+ +|++|.+
T Consensus 314 ~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred HHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 445555555555331 2233333445556666666661 000 00 4555554
Q ss_pred -----ecC-CCCCCceEEEEec----cCCCCC-----CcccccCCCCCCeEEeeccc--ccCceeEEecCCCCccccEEE
Q 044637 229 -----SEY-KFPPSLTQLSLSN----TELMED-----PMPTLEELPHLEVLKLKQNS--YLERKLVCVGCSSFPQLKILH 291 (370)
Q Consensus 229 -----~~~-~~p~~L~~L~l~~----~~~~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~ 291 (370)
.+. .+ ++|++|++++ +.+++. .+..+..+++|+.|+++.|. +++..+... ...+++|++|+
T Consensus 392 ~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~ 469 (592)
T 3ogk_B 392 NESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWML 469 (592)
T ss_dssp HHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEE
T ss_pred HHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEee
Confidence 111 24 5666666652 233221 11224456667777765432 333222211 23467788888
Q ss_pred ecCCCCCc--eeEeCCCCCCCcceEeecCCcccC-CCchhcccCCCCcEEEecCCC
Q 044637 292 LKSMLWLE--EWTMGAGAMPKLESLILNPCAYLR-KLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 292 l~~~~~l~--~i~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+++|. ++ .++.....+++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 88754 54 233345678899999999998432 245555678899999999986
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=9.4e-21 Score=170.50 Aligned_cols=218 Identities=18% Similarity=0.174 Sum_probs=169.4
Q ss_pred eeEEEcCCCCcc--cCCcccC-------CcCCCcEEeeCCCCCc-ccChhh--hcCCCCcEEecCCCcCccccHHHhcc-
Q 044637 68 LRVLNLGSAVLD--QYPPGLE-------NFFYLKYLKLNIPSLK-CLPSLL--CTLINLQTLEMPSSYIDHSPEDIWMM- 134 (370)
Q Consensus 68 L~~L~L~~~~~~--~~~~~~~-------~l~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~lp~~i~~l- 134 (370)
|++|+++++.++ .+|..+. .+++|++|++++|.++ .+|..+ +.+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 888999999885 6776665 7899999999999998 678776 89999999999999888778888877
Q ss_pred ----ccCcEEEccCCcCCCCCC-CCCCCCCCCceeccccCC-CC---Ccccc--CCCCCccEEEEecccccch--hcHHH
Q 044637 135 ----LKLMHLNFGSITLPAPPK-NNSSTLKNLIFISALHPG-SC---TPDIL--GRLPNVQTLRISGDLSYYH--SGVSK 201 (370)
Q Consensus 135 ----~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~---~~~~l--~~l~~L~~L~l~~~~~~~~--~~~~~ 201 (370)
++|++|+++ ++....++ ..++++++|++|++.++. .. .+..+ +.+++|+.|++++|. .. ..++.
T Consensus 145 ~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~ 221 (312)
T 1wwl_A 145 QWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG--METPSGVCS 221 (312)
T ss_dssp TTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC--CCCHHHHHH
T ss_pred HhhcCCCcEEEee-CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc--CcchHHHHH
Confidence 899999999 77755554 789999999999988776 22 34444 889999999999995 22 12332
Q ss_pred hhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCc-ccccCCCCCCeEEeecccccCceeEEec
Q 044637 202 SLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPM-PTLEELPHLEVLKLKQNSYLERKLVCVG 280 (370)
Q Consensus 202 ~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 280 (370)
.+ +..+ ++|++|++++|.+.+..+ ..+..+++|++|++++|.++. ++..
T Consensus 222 ~~--------------------------~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~- 271 (312)
T 1wwl_A 222 AL--------------------------AAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKG- 271 (312)
T ss_dssp HH--------------------------HHTT-CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSS-
T ss_pred HH--------------------------HhcC-CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhh-
Confidence 21 1234 677777788887766553 445678999999999998872 2332
Q ss_pred CCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCccc
Q 044637 281 CSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL 322 (370)
Q Consensus 281 ~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l 322 (370)
+. ++|++|+++++ .++.+|. +..+++|+.|++++|+..
T Consensus 272 ~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 22 78999999994 6888866 889999999999999754
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.7e-19 Score=175.84 Aligned_cols=232 Identities=16% Similarity=0.065 Sum_probs=151.2
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+..+|. .+++|+.|+++ +
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~-~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF-G 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC-S
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC-C
Confidence 567777777777776665 35677777777777777665 56777777777776666665 45667777777 5
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC---C---
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE---G--- 218 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~--- 218 (370)
|....+|.. +++|++|++.++. ..++. .+++|+.|++++|. ...+| ..+++|+.|+++++ +
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~---l~~l~---~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ---LTSLP---MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC---CCCCc---ccCCCCcEEECCCCCCCCCCC
Confidence 555555543 3566666666555 33332 23445555555552 22233 23445555555540 0
Q ss_pred CccccceEEE------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEe
Q 044637 219 NMRQLSRMIL------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHL 292 (370)
Q Consensus 219 ~~~~L~~L~l------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 292 (370)
...+|+.|.+ .+...+++|++|++++|.+.+ .| ..+++|+.|++++|.+... + ..+++|+.|++
T Consensus 199 ~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l--p----~~~~~L~~L~L 268 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL--P----MLPSGLLSLSV 268 (622)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC--C----CCCTTCCEEEC
T ss_pred ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC--C----cccccCcEEeC
Confidence 0003444433 122233889999999998765 44 5679999999999988642 2 15789999999
Q ss_pred cCCCCCceeEeCCCCCCCcceEeecCCcccCCCchhcc
Q 044637 293 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW 330 (370)
Q Consensus 293 ~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 330 (370)
++| .++.+|..+..+++|+.|++++|+..+..|..+.
T Consensus 269 s~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 269 YRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 995 6889998899999999999999997665555443
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=9.5e-21 Score=185.30 Aligned_cols=282 Identities=12% Similarity=0.030 Sum_probs=191.2
Q ss_pred hHHHhccCCeeeEEEcCCCCcc-----cCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecC------------
Q 044637 58 CENFCKKFKHLRVLNLGSAVLD-----QYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMP------------ 120 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~------------ 120 (370)
+..++..++.|++|+++++.++ .++..+..+++|++|+++++.+..+|..+..+++|++|+++
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 4556667788888888877764 33344556778888888887776666666666777766665
Q ss_pred ---------------CCcCccccHHHhccccCcEEEccCCcCCC--CCCCCCCCCCCCceeccccCC--CCCccccCCCC
Q 044637 121 ---------------SSYIDHSPEDIWMMLKLMHLNFGSITLPA--PPKNNSSTLKNLIFISALHPG--SCTPDILGRLP 181 (370)
Q Consensus 121 ---------------~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~ 181 (370)
++....+|..+..+++|++|+++ +|... .++..+..+++|++|++..+. ..++.....++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL-YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET-TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecC-CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 33234456666778899999998 65421 122235778899999876333 33344446788
Q ss_pred CccEEEEec----------ccccchhcHHHhhhccCCCCEEEEec---CCCcc--------ccceEEEe-----------
Q 044637 182 NVQTLRISG----------DLSYYHSGVSKSLCQLHKLECLKLVN---EGNMR--------QLSRMILS----------- 229 (370)
Q Consensus 182 ~L~~L~l~~----------~~~~~~~~~~~~l~~l~~L~~L~l~~---~~~~~--------~L~~L~l~----------- 229 (370)
+|+.|++.+ +.......+......+++|++|++.. ++..+ +|++|.+.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 999999994 43122334555566789999999954 22111 57888773
Q ss_pred ---------cCCCCCCceEEEEeccC--CCCCCccccc-CCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCC
Q 044637 230 ---------EYKFPPSLTQLSLSNTE--LMEDPMPTLE-ELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLW 297 (370)
Q Consensus 230 ---------~~~~p~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 297 (370)
+..+ ++|++|+++.|. +.+..+..++ .+++|+.|++++|.+++..++.. ...+++|+.|+|++|+
T Consensus 423 p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 423 PLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp CCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-
T ss_pred hHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-
Confidence 2347 899999998764 4444444444 58999999999998876554444 5788999999999987
Q ss_pred Cce--eEeCCCCCCCcceEeecCCcccCC-CchhcccCCCCcEEEecCC
Q 044637 298 LEE--WTMGAGAMPKLESLILNPCAYLRK-LPEELWCIKSLCKLELHWP 343 (370)
Q Consensus 298 l~~--i~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~ 343 (370)
++. ++.....+++|+.|++++|..... +......++.++...+...
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 552 343345789999999999995443 2223346788877777665
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.9e-19 Score=160.33 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=141.4
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
..+++|++|+++++.++.++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+..++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 46788999999999988776 58889999999999999998886 899999999999999888876 6888999999999
Q ss_pred cCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcc
Q 044637 143 GSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 143 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 221 (370)
+ +|....++. +..+++|++|++.++. ...+. +..+++|+.|++++|. ...++. +..+++|+.|++++..
T Consensus 115 ~-~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~n~--- 184 (308)
T 1h6u_A 115 T-STQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADDNK--- 184 (308)
T ss_dssp T-TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSC---
T ss_pred C-CCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCCCc---
Confidence 9 776555654 7888999999987777 44443 7788889999998884 233333 6667777777776511
Q ss_pred ccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccC
Q 044637 222 QLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLE 273 (370)
Q Consensus 222 ~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 273 (370)
+..+. .+..+ ++|++|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 185 -l~~~~-~l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 -ISDIS-PLASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -CCCCG-GGGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -cCcCh-hhcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 11111 23445 66777777776654432 35666777777776666544
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=9.5e-19 Score=154.52 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=122.0
Q ss_pred EEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCCcCC
Q 044637 71 LNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSITLP 148 (370)
Q Consensus 71 L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~ 148 (370)
++-.+..+..+|..+. ++|++|++++|.++.++. .++.+++|++|++++|.+..++. .+..+++|++|+++ ++..
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCcc
Confidence 3444444556666553 467777777777776554 66777777777777776666553 46677777777777 5543
Q ss_pred CCC-CCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchh-cHHHhhhccCCCCEEEEecCCCccccc
Q 044637 149 APP-KNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHS-GVSKSLCQLHKLECLKLVNEGNMRQLS 224 (370)
Q Consensus 149 ~~~-~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~ 224 (370)
..+ +..+.++++|++|++.++. ...+ ..++.+++|+.|+++++. ... .+|..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~l~~~~~~------------------- 147 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSN------------------- 147 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCCCCCGGGGG-------------------
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc--cceecCchhhcc-------------------
Confidence 333 3445666666666655555 2222 245666666677666663 211 12333333
Q ss_pred eEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCC----eEEeecccccCceeEEecCCCCccccEEEecCCCCCce
Q 044637 225 RMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLE----VLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEE 300 (370)
Q Consensus 225 ~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 300 (370)
+ ++|++|++++|.+.+..+..++.+++|+ .|++++|.+.+.. .. .....+|+.|+++++ .++.
T Consensus 148 --------l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--~~-~~~~~~L~~L~L~~n-~l~~ 214 (276)
T 2z62_A 148 --------L-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--PG-AFKEIRLKELALDTN-QLKS 214 (276)
T ss_dssp --------C-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC--TT-SSCSCCEEEEECCSS-CCSC
T ss_pred --------C-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC--cc-ccCCCcccEEECCCC-ceee
Confidence 3 4555555555555444444444444444 5666666654321 11 222346777777774 4666
Q ss_pred eEeC-CCCCCCcceEeecCCccc
Q 044637 301 WTMG-AGAMPKLESLILNPCAYL 322 (370)
Q Consensus 301 i~~~-~~~l~~L~~L~l~~c~~l 322 (370)
++.. +..+++|+.|++++|+..
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBC
T ss_pred cCHhHhcccccccEEEccCCccc
Confidence 6543 356777777777777644
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=7.1e-19 Score=155.33 Aligned_cols=198 Identities=21% Similarity=0.200 Sum_probs=141.8
Q ss_pred CeeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCcccc-HHHhccccCcEEEc
Q 044637 66 KHLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSP-EDIWMMLKLMHLNF 142 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l 142 (370)
+.|++|++++|.++.++. .+..+++|++|++++|.+..++. .++.+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 469999999999995554 78999999999999999997754 7899999999999999887766 56889999999999
Q ss_pred cCCcCCCCCC-CCCCCCCCCceeccccCC-C--CCccccCCCCCccEEEEecccccchhcHHHhhhccCCCC----EEEE
Q 044637 143 GSITLPAPPK-NNSSTLKNLIFISALHPG-S--CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLE----CLKL 214 (370)
Q Consensus 143 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~L~l 214 (370)
+ ++....++ ..++.+++|++|++.++. . .++..+..+++|+.|++++|. .....+..+..+++|+ .|++
T Consensus 108 ~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 V-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp T-TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred C-CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeec
Confidence 9 76644444 468899999999988887 3 368889999999999999995 4444444555555554 4555
Q ss_pred ecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccc
Q 044637 215 VNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSY 271 (370)
Q Consensus 215 ~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 271 (370)
++.. +..+.-..... .+|++|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus 185 s~n~----l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 185 SLNP----MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CSSC----CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCc----ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 4411 11111011222 3566666666665444444445566666666665544
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.9e-22 Score=191.37 Aligned_cols=108 Identities=27% Similarity=0.215 Sum_probs=53.0
Q ss_pred CCceEEEEeccCCCCCCccccc-----CCCCCCeEEeecccccCce---eEEecCCCCccccEEEecCCCCCceeE-eC-
Q 044637 235 PSLTQLSLSNTELMEDPMPTLE-----ELPHLEVLKLKQNSYLERK---LVCVGCSSFPQLKILHLKSMLWLEEWT-MG- 304 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~- 304 (370)
++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.. ++.. +..+++|++|++++| .+.... ..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l 361 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNN-RLEDAGVREL 361 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSS-BCHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH-HhhCCCccEEEccCC-ccccccHHHH
Confidence 4555555555544322222221 1245555555555544321 1111 233456666666664 343211 11
Q ss_pred ---CC-CCCCcceEeecCCcccC----CCchhcccCCCCcEEEecCCC
Q 044637 305 ---AG-AMPKLESLILNPCAYLR----KLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 305 ---~~-~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~~~ 344 (370)
+. ..++|+.|++++|.... .+|..+..+++|++|++++|+
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 11 15567777777776443 556666667777777777765
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=3.5e-22 Score=189.55 Aligned_cols=281 Identities=15% Similarity=0.021 Sum_probs=148.6
Q ss_pred HHHhccCCeeeEEEcCCCCcc-cCCccc-CCcC----CCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcCccc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLD-QYPPGL-ENFF----YLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYIDHS 127 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~-~~~~~~-~~l~----~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~l 127 (370)
+..+..+++|++|++++|.++ ..+..+ ..++ +|++|++++|.+. .++..+..+++|++|++++|.+...
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 444555555666666655554 111111 1222 4566666665555 2344555555666666665543321
Q ss_pred -cHHHh-----ccccCcEEEccCCcCCCC-----CCCCCCCCCCCceeccccCC--CCCccccC-----CCCCccEEEEe
Q 044637 128 -PEDIW-----MMLKLMHLNFGSITLPAP-----PKNNSSTLKNLIFISALHPG--SCTPDILG-----RLPNVQTLRIS 189 (370)
Q Consensus 128 -p~~i~-----~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~l~-----~l~~L~~L~l~ 189 (370)
+..+. ..++|++|+++ +|.... ++..+..+++|++|++.++. ...+..+. ..++|+.|+++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLE-YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECT-TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHhcCCCcceEEECC-CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 11111 13346666665 443111 12233445566666655444 11111111 23456666666
Q ss_pred cccccchh----cHHHhhhccCCCCEEEEecCCC-ccccceEEE-ecCCCCCCceEEEEeccCCCCC----CcccccCCC
Q 044637 190 GDLSYYHS----GVSKSLCQLHKLECLKLVNEGN-MRQLSRMIL-SEYKFPPSLTQLSLSNTELMED----PMPTLEELP 259 (370)
Q Consensus 190 ~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~-~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~----~~~~l~~l~ 259 (370)
+|. ... .++..+..+++|+.|++++..- ...+..+.- ....+ ++|++|++++|.+... .+..+..++
T Consensus 208 ~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 208 SCG--VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp TSC--CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred CCC--CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 653 222 2455555666666666654110 000000000 11246 8899999999987653 355566789
Q ss_pred CCCeEEeecccccCceeEE---ecCCCCccccEEEecCCCCCce-----eEeCCCCCCCcceEeecCCcccCCCch----
Q 044637 260 HLEVLKLKQNSYLERKLVC---VGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLRKLPE---- 327 (370)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~~l~~L~~L~l~~c~~l~~l~~---- 327 (370)
+|++|++++|.+.+..... ......++|++|++++|. ++. ++..+..+++|+.|++++|......+.
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 9999999988775432111 001234689999999875 442 344456779999999999974432222
Q ss_pred hccc-CCCCcEEEecCCC
Q 044637 328 ELWC-IKSLCKLELHWPQ 344 (370)
Q Consensus 328 ~~~~-l~~L~~L~l~~~~ 344 (370)
.+.. .++|++|++++|.
T Consensus 364 ~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHTSTTCCCCEEECTTSC
T ss_pred HHcCCCCceEEEECCCCC
Confidence 2222 6799999999986
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.2e-19 Score=157.23 Aligned_cols=205 Identities=16% Similarity=0.133 Sum_probs=102.8
Q ss_pred cCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCC-CCCCCCCCCceecc
Q 044637 88 FFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPK-NNSSTLKNLIFISA 166 (370)
Q Consensus 88 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 166 (370)
+++|+.|+++++.++.++ .++.+++|++|++++|.+..++ .++.+++|++|+++ +|....++ ..++++++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEEC
Confidence 444444444444444333 2444444444444444433332 34444444444444 33322222 22344444444444
Q ss_pred ccCC-CCC-ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEec
Q 044637 167 LHPG-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSN 244 (370)
Q Consensus 167 ~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~ 244 (370)
.++. ... +..+..+++|+.|++++|. .. .++.. .+..+ ++|++|++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~-~~~~~--------------------------~~~~l-~~L~~L~l~~ 166 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQ--LQ-SLPKG--------------------------VFDKL-TNLTELDLSY 166 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC--CC-CCCTT--------------------------TTTTC-TTCCEEECCS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCc--cC-ccCHH--------------------------HhccC-ccCCEEECCC
Confidence 4444 222 2234556666666666663 21 11111 12233 5566666666
Q ss_pred cCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcccCC
Q 044637 245 TELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRK 324 (370)
Q Consensus 245 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~ 324 (370)
|.+.+..+..++.+++|+.|++++|.+.+.. +.. +..+++|+.|++++++ + .+.+|+|+.|.+..|.....
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~l~~N~-~------~~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGV-FDRLTSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCSSC-B------CCCTTTTHHHHHHHHHTGGG
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccC-HHH-HhCCcCCCEEEccCCC-c------cccCcHHHHHHHHHHhCCCc
Confidence 6655544445566677777777766665432 222 4566677777777653 1 24566777777777766666
Q ss_pred CchhcccCCC
Q 044637 325 LPEELWCIKS 334 (370)
Q Consensus 325 l~~~~~~l~~ 334 (370)
+|..++.++.
T Consensus 238 ip~~~~~~~~ 247 (272)
T 3rfs_A 238 VRNSAGSVAP 247 (272)
T ss_dssp BBCTTSCBCG
T ss_pred ccCcccccCC
Confidence 7766665544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.5e-18 Score=152.80 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=104.8
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHHHhccccCcEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHL 140 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 140 (370)
+.++++++.++++++.++.+|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+..++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4678889999999999998887764 6899999999999966 56789999999999999988887754 789999999
Q ss_pred EccCCcCCCCCCCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEeccc
Q 044637 141 NFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDL 192 (370)
Q Consensus 141 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 192 (370)
+++ ++....+|..+..+++|++|++.++. ..++ ..+..+++|+.|+++++.
T Consensus 83 ~Ls-~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 83 DLS-HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ECC-SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ECC-CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 999 77777888888888888888877776 4444 557778888888888774
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.2e-20 Score=171.55 Aligned_cols=255 Identities=16% Similarity=0.146 Sum_probs=144.4
Q ss_pred CeeeEEEcCCCCcccCCcccCCc--CCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcc--ccHHHhccccCcEEE
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENF--FYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDH--SPEDIWMMLKLMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~ 141 (370)
..++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34666777666554 2334444 56777777776666554455566777777777764432 555566677777777
Q ss_pred ccCCcC-CCCCCCCCCCCCCCceeccccCC--C--CCccccCCCCCccEEEEecccccchhcHHHhhhccC-CCCEEEEe
Q 044637 142 FGSITL-PAPPKNNSSTLKNLIFISALHPG--S--CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH-KLECLKLV 215 (370)
Q Consensus 142 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~ 215 (370)
++ +|. ....+..++.+++|++|++.++. . .++..+..+++|+.|++++|.......++..+..++ +|+.|+++
T Consensus 125 L~-~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LE-GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CT-TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred Cc-CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77 444 22334445556666666666552 2 244445667777777777762111123566666676 77777666
Q ss_pred cCCCccccceEEEecCCCCCCceEEEEeccC-CCCCCcccccCCCCCCeEEeeccc-ccCceeEEecCCCCccccEEEec
Q 044637 216 NEGNMRQLSRMILSEYKFPPSLTQLSLSNTE-LMEDPMPTLEELPHLEVLKLKQNS-YLERKLVCVGCSSFPQLKILHLK 293 (370)
Q Consensus 216 ~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~ 293 (370)
+....+.-..+.-.+..+ ++|++|++++|. +++..+..++.+++|++|++++|. +....+ .. +..+++|+.|+++
T Consensus 204 ~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-l~~~~~L~~L~l~ 280 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LE-LGEIPTLKTLQVF 280 (336)
T ss_dssp SCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GG-GGGCTTCCEEECT
T ss_pred CCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HH-HhcCCCCCEEecc
Confidence 521000000000022345 777778887776 555666677778888888888774 222221 12 4567788888888
Q ss_pred CCCCCceeEeCCCCC-CCcceEeecCCcccCCCchhcc
Q 044637 294 SMLWLEEWTMGAGAM-PKLESLILNPCAYLRKLPEELW 330 (370)
Q Consensus 294 ~~~~l~~i~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~ 330 (370)
+| +..- .+..+ .+|+.|++++|...+..|..++
T Consensus 281 ~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 281 GI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred Cc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 76 2210 11222 2355666777776655565444
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=3.3e-20 Score=168.60 Aligned_cols=230 Identities=15% Similarity=0.139 Sum_probs=175.0
Q ss_pred HHHhccC--CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCc-c-cChhhhcCCCCcEEecCCCcCc-cccHHHhc
Q 044637 59 ENFCKKF--KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLK-C-LPSLLCTLINLQTLEMPSSYID-HSPEDIWM 133 (370)
Q Consensus 59 ~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-lp~~~~~l~~L~~L~l~~~~~~-~lp~~i~~ 133 (370)
+..+..+ +++++|+++++.+...+..+..+++|++|++++|.+. . +|..+..+++|++|++++|.+. ..+..++.
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 4455666 8999999999998866666778999999999999987 3 8888999999999999999665 56778889
Q ss_pred cccCcEEEccCCc-CCC--CCCCCCCCCCCCceeccccC-C-C--CCccccCCCC-CccEEEEeccc-ccchhcHHHhhh
Q 044637 134 MLKLMHLNFGSIT-LPA--PPKNNSSTLKNLIFISALHP-G-S--CTPDILGRLP-NVQTLRISGDL-SYYHSGVSKSLC 204 (370)
Q Consensus 134 l~~L~~L~l~~~~-~~~--~~~~~l~~l~~L~~L~l~~~-~-~--~~~~~l~~l~-~L~~L~l~~~~-~~~~~~~~~~l~ 204 (370)
+++|++|+++ +| ... .++..+.++++|++|++.++ . . .++..+..++ +|+.|++++|. ......++..+.
T Consensus 141 ~~~L~~L~L~-~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 141 NSNLVRLNLS-GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp CTTCSEEECT-TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred CCCCCEEECC-CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 9999999999 76 333 35666778999999999988 5 2 2566788899 99999999984 122267788889
Q ss_pred ccCCCCEEEEecCCC--ccccceEEEecCCCCCCceEEEEeccC-CCCCCcccccCCCCCCeEEeecccccCceeEEecC
Q 044637 205 QLHKLECLKLVNEGN--MRQLSRMILSEYKFPPSLTQLSLSNTE-LMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGC 281 (370)
Q Consensus 205 ~l~~L~~L~l~~~~~--~~~L~~L~l~~~~~p~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 281 (370)
.+++|+.|+++++.. .-.+. .+..+ ++|++|++++|. +.......++.+++|+.|++++| +.... +
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~-----~ 288 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQ----EFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-----L 288 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGG----GGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-----H
T ss_pred hCCCCCEEeCCCCCcCCHHHHH----HHhCC-CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH-----H
Confidence 999999999987220 00111 45677 999999999994 43344446788999999999988 44333 2
Q ss_pred CCC-ccccEEEecCCCCCcee
Q 044637 282 SSF-PQLKILHLKSMLWLEEW 301 (370)
Q Consensus 282 ~~~-~~L~~L~l~~~~~l~~i 301 (370)
..+ .+++.|++++ +.++..
T Consensus 289 ~~l~~~l~~L~l~~-n~l~~~ 308 (336)
T 2ast_B 289 QLLKEALPHLQINC-SHFTTI 308 (336)
T ss_dssp HHHHHHSTTSEESC-CCSCCT
T ss_pred HHHHhhCcceEEec-ccCccc
Confidence 223 3477777876 456643
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.9e-18 Score=148.94 Aligned_cols=195 Identities=22% Similarity=0.226 Sum_probs=135.4
Q ss_pred eeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHHH-hccccCcEEEccC
Q 044637 67 HLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPEDI-WMMLKLMHLNFGS 144 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~l~~ 144 (370)
..++++++++.++.+|..+. ++|++|++++|.++.+|. .++.+++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~- 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT- 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC-
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC-
Confidence 46788999888888887664 588999999999887764 6888999999999999888887654 678999999999
Q ss_pred CcCCCCCCC-CCCCCCCCceeccccCC-CCC-ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcc
Q 044637 145 ITLPAPPKN-NSSTLKNLIFISALHPG-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 145 ~~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 221 (370)
++....++. .+..+++|++|++.++. ... +..+..+++|+.|+++++. .. .++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~-~~~~~------------------- 151 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQ-SLPKG------------------- 151 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC-CCCTT-------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CC-ccCHh-------------------
Confidence 666555553 45778888888877766 333 3446778888888888873 22 22211
Q ss_pred ccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCC
Q 044637 222 QLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSML 296 (370)
Q Consensus 222 ~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 296 (370)
.+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+.. +.. +..+++|+.|++++++
T Consensus 152 -------~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 -------VFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGA-FDSLEKLKMLQLQENP 216 (270)
T ss_dssp -------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCSSC
T ss_pred -------HccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHH-hccccCCCEEEecCCC
Confidence 23334 66666666666665555555667777777777777665322 112 4556777777777643
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1.8e-18 Score=152.39 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=165.7
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEE
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLN 141 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 141 (370)
..+++|+.|+++++.++.++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.+..++.. ++.+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 56789999999999988665 4888999999999999999875 789999999999999988887754 68899999999
Q ss_pred ccCCcCCCCCCC-CCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCC
Q 044637 142 FGSITLPAPPKN-NSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 218 (370)
Q Consensus 142 l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 218 (370)
++ +|....++. .++.+++|++|++.++. ...+ ..++.+++|+.|++++|. .. .++..
T Consensus 116 L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~-~~~~~---------------- 175 (272)
T 3rfs_A 116 LV-ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQ-SLPEG---------------- 175 (272)
T ss_dssp CT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC-CCCTT----------------
T ss_pred CC-CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--cC-ccCHH----------------
Confidence 99 777555554 47899999999988887 4444 446889999999999984 22 22211
Q ss_pred CccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCC
Q 044637 219 NMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWL 298 (370)
Q Consensus 219 ~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 298 (370)
.+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+ .+.+++|+.|+++.+...
T Consensus 176 ----------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 176 ----------VFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHS 235 (272)
T ss_dssp ----------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHHHTG
T ss_pred ----------HhcCC-ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHHhCC
Confidence 23445 8888899999988777777789999999999998865 345788999999885544
Q ss_pred ceeEeCCCCCCCc
Q 044637 299 EEWTMGAGAMPKL 311 (370)
Q Consensus 299 ~~i~~~~~~l~~L 311 (370)
..+|..++.++..
T Consensus 236 g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 236 GVVRNSAGSVAPD 248 (272)
T ss_dssp GGBBCTTSCBCGG
T ss_pred CcccCcccccCCC
Confidence 5788777766653
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=3.1e-18 Score=152.26 Aligned_cols=200 Identities=20% Similarity=0.139 Sum_probs=138.0
Q ss_pred cCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcccc-HHHhccccCcEEEccCCcCCCCCCCCCCCCCCCce
Q 044637 85 LENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSP-EDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIF 163 (370)
Q Consensus 85 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 163 (370)
++.+++++.++++++.++.+|..+. ++++.|++++|.+..++ ..+..+++|++|+++ ++....++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECC-CCccCcccCC-CCCCcCCE
Confidence 6678899999999999999987664 68999999999887664 568899999999999 7665555543 67788888
Q ss_pred eccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEE
Q 044637 164 ISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSL 242 (370)
Q Consensus 164 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l 242 (370)
|++.++. ..++..+..+++|+.|+++++. .....+.. +..+ ++|++|++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~--l~~l~~~~---------------------------~~~l-~~L~~L~L 131 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGA---------------------------LRGL-GELQELYL 131 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC--CCCCCSST---------------------------TTTC-TTCCEEEC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc--CcccCHHH---------------------------HcCC-CCCCEEEC
Confidence 8877776 6667777777788888887773 22211122 3344 56666666
Q ss_pred eccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeCCCCCCCcceEeecCCcc
Q 044637 243 SNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 321 (370)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~ 321 (370)
++|.+....+..+..+++|+.|++++|.+.+.. ... +..+++|+.|++++ +.++.+|..+..+++|+.|.+.+|+.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~-~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGL-LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccC-HHH-hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 666665544445566677777777766665321 111 34566677777776 34666666666666777777776654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=4.4e-18 Score=152.68 Aligned_cols=201 Identities=18% Similarity=0.175 Sum_probs=129.7
Q ss_pred EcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCC
Q 044637 72 NLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPP 151 (370)
Q Consensus 72 ~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 151 (370)
.+..+.+.... ....+++|++|+++++.+..+| .+..+++|++|++++|.+..++. +..+++|++|+++ ++....+
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~-~n~l~~~ 100 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELS-GNPLKNV 100 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECC-SCCCSCC
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEcc-CCcCCCc
Confidence 34444444221 2456889999999999999888 68999999999999998888887 8999999999999 7765555
Q ss_pred CCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEec
Q 044637 152 KNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSE 230 (370)
Q Consensus 152 ~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~ 230 (370)
+ .+..+++|++|++.++. ..++ .+..+++|+.|+++++. ...++. +..+++|+.|++++.. +..+. .+
T Consensus 101 ~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~n~----l~~~~-~l 169 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ---ITNISP-LAGLTNLQYLSIGNAQ----VSDLT-PL 169 (308)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC---CCCCGG-GGGCTTCCEEECCSSC----CCCCG-GG
T ss_pred h-hhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCc---cCcCcc-ccCCCCccEEEccCCc----CCCCh-hh
Confidence 4 68889999999988887 5444 48889999999999884 222322 5556555555555411 11110 13
Q ss_pred CCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecC
Q 044637 231 YKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKS 294 (370)
Q Consensus 231 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 294 (370)
..+ ++|++|++++|.+.+.. .+..+++|++|++++|.+.+.. . +..+++|+.|++++
T Consensus 170 ~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 170 ANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTN 226 (308)
T ss_dssp TTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEE
T ss_pred cCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccC
Confidence 334 45555555555443221 1444555555555554444322 1 33445555555554
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1e-17 Score=147.36 Aligned_cols=198 Identities=21% Similarity=0.223 Sum_probs=136.3
Q ss_pred CCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCCcCCCCCCCC-CCCCCCCceecc
Q 044637 89 FYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSITLPAPPKNN-SSTLKNLIFISA 166 (370)
Q Consensus 89 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l 166 (370)
...++++++++.++.+|..+. ++|++|++++|.+..++. .+..+++|++|+++ ++....++.. +.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcCCCCCCEEEC
Confidence 357899999999999887654 689999999998887775 57889999999999 7665566554 467778888887
Q ss_pred ccCC-CCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEec
Q 044637 167 LHPG-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSN 244 (370)
Q Consensus 167 ~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~ 244 (370)
.++. ..++ ..+..+++|+.|+++++. .....+. .+..+ ++|++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~---------------------------~~~~l-~~L~~L~Ls~ 142 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ--LKSLPPR---------------------------VFDSL-TKLTYLSLGY 142 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC--CCCCCTT---------------------------TTTTC-TTCCEEECCS
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc--cCeeCHH---------------------------HhCcC-cCCCEEECCC
Confidence 6666 3333 345667777777777663 2111111 23345 6777777777
Q ss_pred cCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEeC-CCCCCCcceEeecCCccc
Q 044637 245 TELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYL 322 (370)
Q Consensus 245 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~l~~L~~L~l~~c~~l 322 (370)
|.+....+..++.+++|+.|++++|.+.+.. +.. +..+++|++|+++++ .++.++.. +..+++|+.|++++|+..
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGA-FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCccCHhHccCCcccceeEecCCcCcEeC-hhH-hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCee
Confidence 7766555555777888888888877765432 222 556777888888774 56666643 566777888888777643
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=1.8e-20 Score=173.75 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=164.2
Q ss_pred hhhHHHhccCCeeeEEEcCCCCcc-c----CCcccCCcCCCcEEeeCCCCCc----ccChhh-------hcCCCCcEEec
Q 044637 56 IQCENFCKKFKHLRVLNLGSAVLD-Q----YPPGLENFFYLKYLKLNIPSLK----CLPSLL-------CTLINLQTLEM 119 (370)
Q Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~-~----~~~~~~~l~~L~~L~l~~~~~~----~lp~~~-------~~l~~L~~L~l 119 (370)
..+...+..+++|++|+|++|.++ . ++..+..+++|++|++++|.+. .+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 344556778899999999999877 2 4455778899999999987554 334444 67889999999
Q ss_pred CCCcCcc-----ccHHHhccccCcEEEccCCcCCCCC-CCCCCCCCCCceeccccCCCCCccccCCC---------CCcc
Q 044637 120 PSSYIDH-----SPEDIWMMLKLMHLNFGSITLPAPP-KNNSSTLKNLIFISALHPGSCTPDILGRL---------PNVQ 184 (370)
Q Consensus 120 ~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~l---------~~L~ 184 (370)
++|.+.. +|..+..+++|++|+++ +|..... +..+. ..+..+ ++|+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~------------------~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIA------------------RALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHH------------------HHHHHHHHHHHHHTCCCCC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHH------------------HHHHHHhhhhhcccCCCCc
Confidence 9986654 77778888999999998 6542110 11111 111111 5566
Q ss_pred EEEEecccccch-hcHH---HhhhccCCCCEEEEecCCCc-cccceEEE-ecCCCCCCceEEEEeccCCC----CCCccc
Q 044637 185 TLRISGDLSYYH-SGVS---KSLCQLHKLECLKLVNEGNM-RQLSRMIL-SEYKFPPSLTQLSLSNTELM----EDPMPT 254 (370)
Q Consensus 185 ~L~l~~~~~~~~-~~~~---~~l~~l~~L~~L~l~~~~~~-~~L~~L~l-~~~~~p~~L~~L~l~~~~~~----~~~~~~ 254 (370)
.|++++|. .. ..++ ..+..+++|+.|+++++.-. ..+..+.- ++..+ ++|++|++++|.++ ...+..
T Consensus 163 ~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 163 SIICGRNR--LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp EEECCSSC--CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHH
T ss_pred EEECCCCC--CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHH
Confidence 66666653 22 2222 35555666666666541100 00000000 23455 78888888888864 345666
Q ss_pred ccCCCCCCeEEeecccccCce---eEEecC--CCCccccEEEecCCCCCce-----eEeCC-CCCCCcceEeecCCcccC
Q 044637 255 LEELPHLEVLKLKQNSYLERK---LVCVGC--SSFPQLKILHLKSMLWLEE-----WTMGA-GAMPKLESLILNPCAYLR 323 (370)
Q Consensus 255 l~~l~~L~~L~l~~~~~~~~~---~~~~~~--~~~~~L~~L~l~~~~~l~~-----i~~~~-~~l~~L~~L~l~~c~~l~ 323 (370)
+..+++|+.|++++|.+.+.. ++.. + +.+++|++|+|++| .++. ++..+ ..+++|+.|++++|+...
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDA-FSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHH-HHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHH-HhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 788899999999988876541 1111 2 44788999999885 4654 66555 557899999999988665
Q ss_pred CCc--hhc-ccCCCCcEEEecCC
Q 044637 324 KLP--EEL-WCIKSLCKLELHWP 343 (370)
Q Consensus 324 ~l~--~~~-~~l~~L~~L~l~~~ 343 (370)
..+ ..+ ..+++++.+++...
T Consensus 318 ~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 318 EDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp TSHHHHHHHHHHHHHTCCEECCC
T ss_pred chhHHHHHHHHhhhcCcchhhhc
Confidence 443 222 23455555555443
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=3.9e-19 Score=173.86 Aligned_cols=280 Identities=15% Similarity=0.145 Sum_probs=169.4
Q ss_pred hHHHhccCCeeeEEEcCCCCccc-----CCcccCCcCCCcEEeeCCCC--Cc--ccChhhhcCCCCcEEecCCC-cCccc
Q 044637 58 CENFCKKFKHLRVLNLGSAVLDQ-----YPPGLENFFYLKYLKLNIPS--LK--CLPSLLCTLINLQTLEMPSS-YIDHS 127 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--~~--~lp~~~~~l~~L~~L~l~~~-~~~~l 127 (370)
+..++..+++|++|++++|.++. ++.....+++|++|+++++. +. .++..+..+++|++|++++| .+..+
T Consensus 148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 227 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence 45555677777777777776541 22223356677777777775 22 23333455778888888877 55556
Q ss_pred cHHHhccccCcEEEccCCcCC-------------------------------CCCCCCCCCCCCCceeccccCC---CCC
Q 044637 128 PEDIWMMLKLMHLNFGSITLP-------------------------------APPKNNSSTLKNLIFISALHPG---SCT 173 (370)
Q Consensus 128 p~~i~~l~~L~~L~l~~~~~~-------------------------------~~~~~~l~~l~~L~~L~l~~~~---~~~ 173 (370)
|..+..+++|++|+++ .+.. ..++..+..+++|++|++.++. ..+
T Consensus 228 ~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTG-GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306 (594)
T ss_dssp HHHHHHCTTCSEEECS-BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH
T ss_pred HHHHhcCCcceEcccc-cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH
Confidence 6667777777777755 3210 0111122246778888876666 122
Q ss_pred ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec------------CCCc--------cccceEEE-----
Q 044637 174 PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN------------EGNM--------RQLSRMIL----- 228 (370)
Q Consensus 174 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~------------~~~~--------~~L~~L~l----- 228 (370)
...+..+++|+.|++.++. ....++.....+++|+.|++.. ++.. .+|++|.+
T Consensus 307 ~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 3335678888888888873 3344444555688888888832 0000 05666644
Q ss_pred ------ec-CCCCCCceEEEEe--c---c-CCCCCC-----cccccCCCCCCeEEeecccccCceeEEecCCCCccccEE
Q 044637 229 ------SE-YKFPPSLTQLSLS--N---T-ELMEDP-----MPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKIL 290 (370)
Q Consensus 229 ------~~-~~~p~~L~~L~l~--~---~-~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 290 (370)
.+ ..+ ++|++|+++ + | .++... +..+..+++|+.|++++ .+++..+... ...+++|+.|
T Consensus 385 ~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L 461 (594)
T 2p1m_B 385 TNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEML 461 (594)
T ss_dssp CHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEE
T ss_pred CHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-HHhchhccEe
Confidence 11 136 778888887 2 2 333211 11245678888888865 4443332221 2237889999
Q ss_pred EecCCCCCce-eEeCC-CCCCCcceEeecCCcccCC-CchhcccCCCCcEEEecCCC
Q 044637 291 HLKSMLWLEE-WTMGA-GAMPKLESLILNPCAYLRK-LPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 291 ~l~~~~~l~~-i~~~~-~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~~ 344 (370)
++++|. ++. .+..+ ..+++|+.|++++|..... +...+..+++|+.|++++|+
T Consensus 462 ~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 462 SVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp EEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred eccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 999865 432 12122 5689999999999986332 22345568999999999997
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=4.5e-18 Score=146.91 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=103.8
Q ss_pred CCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCc-CccccH-HHhccccCcEEEccCC-cCCCCCC-CCCCCCCCCcee
Q 044637 90 YLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSY-IDHSPE-DIWMMLKLMHLNFGSI-TLPAPPK-NNSSTLKNLIFI 164 (370)
Q Consensus 90 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~~-~~~~~~~-~~l~~l~~L~~L 164 (370)
+|++|++++|.++.+|. .++.+++|++|++++|. +..++. .+..+++|++|+++ + +....++ ..+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~-~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-NTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-EETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-CCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666665543 45556666666666663 555553 34556666666666 4 3333333 344556666666
Q ss_pred ccccCC-CCCccccCCCCCcc---EEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCce-E
Q 044637 165 SALHPG-SCTPDILGRLPNVQ---TLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLT-Q 239 (370)
Q Consensus 165 ~l~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~-~ 239 (370)
++.++. ..+|. +..+++|+ .|+++++. ....++.. .+..+ ++|+ +
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~--------------------------~~~~l-~~L~~~ 160 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVN--------------------------AFQGL-CNETLT 160 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTT--------------------------TTTTT-BSSEEE
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcc--------------------------cccch-hcceeE
Confidence 655555 44443 55566666 77777762 11111111 23334 5556 6
Q ss_pred EEEeccCCCCCCcccccCCCCCCeEEeeccc-ccCceeEEecCCCC-ccccEEEecCCCCCceeEeCCCCCCCcceEeec
Q 044637 240 LSLSNTELMEDPMPTLEELPHLEVLKLKQNS-YLERKLVCVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLILN 317 (370)
Q Consensus 240 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~ 317 (370)
|++++|.+.. .+......++|+.|++++|. +.+ ..+.. +..+ ++|+.|++++ +.++.+|.. .+++|+.|.+.
T Consensus 161 L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~-i~~~~-~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 161 LKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTV-IDKDA-FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp EECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCE-ECTTT-TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECT
T ss_pred EEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCccc-CCHHH-hhccccCCcEEECCC-CccccCChh--HhccCceeecc
Confidence 6666665542 22222222667777777663 442 11122 4556 6777777777 456666543 67777777777
Q ss_pred CCc
Q 044637 318 PCA 320 (370)
Q Consensus 318 ~c~ 320 (370)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 664
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=9.6e-20 Score=168.84 Aligned_cols=229 Identities=16% Similarity=0.143 Sum_probs=154.4
Q ss_pred hHHHhccCCeeeEEEcCCCCcc----cCCccc-------CCcCCCcEEeeCCCCCcc-----cChhhhcCCCCcEEecCC
Q 044637 58 CENFCKKFKHLRVLNLGSAVLD----QYPPGL-------ENFFYLKYLKLNIPSLKC-----LPSLLCTLINLQTLEMPS 121 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~----~~~~~~-------~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~ 121 (370)
+...+..+++|++|+|++|.+. .+|..+ ..+++|++|++++|.+.. +|..+..+++|++|++++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 4455778999999999997544 445444 788999999999999885 788899999999999999
Q ss_pred CcCc-----cccHHHhcc---------ccCcEEEccCCcCC--CCCC---CCCCCCCCCceeccccCC-C------CCcc
Q 044637 122 SYID-----HSPEDIWMM---------LKLMHLNFGSITLP--APPK---NNSSTLKNLIFISALHPG-S------CTPD 175 (370)
Q Consensus 122 ~~~~-----~lp~~i~~l---------~~L~~L~l~~~~~~--~~~~---~~l~~l~~L~~L~l~~~~-~------~~~~ 175 (370)
|.+. .++..+..+ ++|++|+++ +|.. ..++ ..+..+++|++|++.++. . ..+.
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 9764 234445555 899999999 6653 2333 234456666666665555 1 1122
Q ss_pred ccCCCCCccEEEEecccccch----hcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCC-
Q 044637 176 ILGRLPNVQTLRISGDLSYYH----SGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMED- 250 (370)
Q Consensus 176 ~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~- 250 (370)
.+..+++|+.|++++|. .. ..++.. +..+ ++|++|++++|.+.+.
T Consensus 211 ~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~---------------------------l~~~-~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNT--FTHLGSSALAIA---------------------------LKSW-PNLRELGLNDCLLSARG 260 (386)
T ss_dssp TGGGCTTCCEEECCSSC--CHHHHHHHHHHH---------------------------GGGC-TTCCEEECTTCCCCHHH
T ss_pred HhhcCCCccEEECcCCC--CCcHHHHHHHHH---------------------------HccC-CCcCEEECCCCCCchhh
Confidence 45556666666666663 22 233333 3345 8899999999988664
Q ss_pred ---Ccccc--cCCCCCCeEEeecccccCc---eeEEecC-CCCccccEEEecCCCCCceeE----eCCCCCCCcceEeec
Q 044637 251 ---PMPTL--EELPHLEVLKLKQNSYLER---KLVCVGC-SSFPQLKILHLKSMLWLEEWT----MGAGAMPKLESLILN 317 (370)
Q Consensus 251 ---~~~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~-~~~~~L~~L~l~~~~~l~~i~----~~~~~l~~L~~L~l~ 317 (370)
.+..+ +.+++|+.|++++|.+.+. .++.. + ..+++|++|++++|+ ++... .....+++++.+.+.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~-l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH-HHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH-HHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhh
Confidence 34455 3499999999999998762 12222 2 457999999999964 44222 112346666666665
Q ss_pred CC
Q 044637 318 PC 319 (370)
Q Consensus 318 ~c 319 (370)
..
T Consensus 339 ~~ 340 (386)
T 2ca6_A 339 EL 340 (386)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.4e-17 Score=143.88 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=143.8
Q ss_pred CCcccChhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCCcC-CCCCCC-CCCCCCCCceecccc-CC-CCCc
Q 044637 100 SLKCLPSLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSITL-PAPPKN-NSSTLKNLIFISALH-PG-SCTP 174 (370)
Q Consensus 100 ~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~-~~~~~~-~l~~l~~L~~L~l~~-~~-~~~~ 174 (370)
.++.+|. +. .+|++|++++|.+..+|. .++.+++|++|+++ ++. ...++. .+.++++|++|++.+ +. ..++
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3667776 33 388999999988887775 57788899999998 664 555554 677888999999877 44 4443
Q ss_pred -cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEecc-CCCCCCc
Q 044637 175 -DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNT-ELMEDPM 252 (370)
Q Consensus 175 -~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~-~~~~~~~ 252 (370)
..+..+++|+.|+++++. ...+|. +..++ .+ ..|++|++++| .+....+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~---l~~lp~-~~~l~------------------------~L-~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG---LKMFPD-LTKVY------------------------ST-DIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC---CCSCCC-CTTCC------------------------BC-CSEEEEEEESCTTCCEECT
T ss_pred HHHhCCCCCCCEEeCCCCC---Cccccc-ccccc------------------------cc-ccccEEECCCCcchhhcCc
Confidence 456788889999998884 222332 22221 12 33447888888 7655555
Q ss_pred ccccCCCCCC-eEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCC-CCcceEeecCCcccCCCchhc
Q 044637 253 PTLEELPHLE-VLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAM-PKLESLILNPCAYLRKLPEEL 329 (370)
Q Consensus 253 ~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~ 329 (370)
..++.+++|+ .|++++|.+.. ++...+.. ++|+.|+++++..++.++. .+..+ ++|+.|++++|. ++.+|..
T Consensus 149 ~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~- 223 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK- 223 (239)
T ss_dssp TTTTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-
T ss_pred ccccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-
Confidence 5678888999 99998887752 22221233 7899999988645887764 46677 889999999887 4566664
Q ss_pred ccCCCCcEEEecCCC
Q 044637 330 WCIKSLCKLELHWPQ 344 (370)
Q Consensus 330 ~~l~~L~~L~l~~~~ 344 (370)
.+++|+.|++.++.
T Consensus 224 -~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 -GLEHLKELIARNTW 237 (239)
T ss_dssp -TCTTCSEEECTTC-
T ss_pred -HhccCceeeccCcc
Confidence 67888888888875
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=2.6e-17 Score=150.39 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=78.8
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcC-ccccHH-HhccccCcEEEccCC
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYI-DHSPED-IWMMLKLMHLNFGSI 145 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~-~~lp~~-i~~l~~L~~L~l~~~ 145 (370)
++++-++++++.+|..+ .+++++|+|++|+++.+|. .++++++|++|++++|.+ +.+|.. +.++++|+++....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777777788888766 3578888888888888875 478888888888888864 445543 456777766443314
Q ss_pred cCCCCC-CCCCCCCCCCceeccccCC-CCCcc-ccCCCCCccEEEEecc
Q 044637 146 TLPAPP-KNNSSTLKNLIFISALHPG-SCTPD-ILGRLPNVQTLRISGD 191 (370)
Q Consensus 146 ~~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~ 191 (370)
+....+ |..+..+++|++|++.++. ..++. .+....++..+++..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence 444444 4556777778887776666 33332 2334445556666554
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.6e-18 Score=159.24 Aligned_cols=135 Identities=17% Similarity=0.228 Sum_probs=85.7
Q ss_pred hhHHHhccCCeeeEEEcCCCCcccCC-----cccCCcC-CCcEEeeCCCCCccc-ChhhhcC-----CCCcEEecCCCcC
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLDQYP-----PGLENFF-YLKYLKLNIPSLKCL-PSLLCTL-----INLQTLEMPSSYI 124 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~~ 124 (370)
..+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..++.+ ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44566666677889999988887444 5667777 888999988888844 4555554 8888999988876
Q ss_pred cccc-HH----Hhcc-ccCcEEEccCCcCCCCCC-CC----CCC-CCCCceeccccCC-C-----CCccccCCCC-CccE
Q 044637 125 DHSP-ED----IWMM-LKLMHLNFGSITLPAPPK-NN----SST-LKNLIFISALHPG-S-----CTPDILGRLP-NVQT 185 (370)
Q Consensus 125 ~~lp-~~----i~~l-~~L~~L~l~~~~~~~~~~-~~----l~~-l~~L~~L~l~~~~-~-----~~~~~l~~l~-~L~~ 185 (370)
...+ .. +..+ ++|++|+++ +|.....+ .. +.. .++|++|++.++. . .++..+..++ +|+.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 5443 32 3344 788888888 65532222 11 223 2467777766655 1 2223333443 6667
Q ss_pred EEEeccc
Q 044637 186 LRISGDL 192 (370)
Q Consensus 186 L~l~~~~ 192 (370)
|++++|.
T Consensus 172 L~Ls~n~ 178 (362)
T 3goz_A 172 LNLRGNN 178 (362)
T ss_dssp EECTTSC
T ss_pred eeecCCC
Confidence 7766664
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=147.31 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=37.0
Q ss_pred CCCcEEeeCCCCCc-ccChhh--hcCCCCcEEecCCCcCcc-cc----HHHhccccCcEEEccCCcCCCCC-CCCCCCCC
Q 044637 89 FYLKYLKLNIPSLK-CLPSLL--CTLINLQTLEMPSSYIDH-SP----EDIWMMLKLMHLNFGSITLPAPP-KNNSSTLK 159 (370)
Q Consensus 89 ~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~-lp----~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~ 159 (370)
++|++|++++|.+. ..|..+ +.+++|++|++++|.+.. .+ ..+..+++|++|+++ +|....+ +..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIA-QAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEE-CCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEee-CCCcchhhHHHhccCC
Confidence 44556666555555 334444 555556666665554332 11 122345566666665 4432222 23344444
Q ss_pred CCceecccc
Q 044637 160 NLIFISALH 168 (370)
Q Consensus 160 ~L~~L~l~~ 168 (370)
+|++|++.+
T Consensus 170 ~L~~L~Ls~ 178 (310)
T 4glp_A 170 ALTSLDLSD 178 (310)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 444444333
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.8e-18 Score=158.90 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=159.3
Q ss_pred EEEcCCCCcc-cCCcccCCcCCCcEEeeCCCCCcccC-----hhhhcCC-CCcEEecCCCcCccc-cHHHhcc-----cc
Q 044637 70 VLNLGSAVLD-QYPPGLENFFYLKYLKLNIPSLKCLP-----SLLCTLI-NLQTLEMPSSYIDHS-PEDIWMM-----LK 136 (370)
Q Consensus 70 ~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~ 136 (370)
.+.++++.++ .+|..+...++|++|++++|.+...+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3678888888 55666666677999999999999765 5678888 999999999977654 4556655 99
Q ss_pred CcEEEccCCcCCC-CCCCC----CCCC-CCCceeccccCC-C-CCc----cccCC-CCCccEEEEeccc--ccchhcHHH
Q 044637 137 LMHLNFGSITLPA-PPKNN----SSTL-KNLIFISALHPG-S-CTP----DILGR-LPNVQTLRISGDL--SYYHSGVSK 201 (370)
Q Consensus 137 L~~L~l~~~~~~~-~~~~~----l~~l-~~L~~L~l~~~~-~-~~~----~~l~~-l~~L~~L~l~~~~--~~~~~~~~~ 201 (370)
|++|+++ +|... ..+.. +..+ ++|++|++.++. . ..+ ..+.. .++|+.|++++|. ......++.
T Consensus 82 L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECC-SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECc-CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999 76633 22222 3444 789999988777 2 222 22444 3689999999885 111235566
Q ss_pred hhhccC-CCCEEEEecCCCccccceEEE-----ecCCCCCCceEEEEeccCCCCCCcc----cccC-CCCCCeEEeeccc
Q 044637 202 SLCQLH-KLECLKLVNEGNMRQLSRMIL-----SEYKFPPSLTQLSLSNTELMEDPMP----TLEE-LPHLEVLKLKQNS 270 (370)
Q Consensus 202 ~l~~l~-~L~~L~l~~~~~~~~L~~L~l-----~~~~~p~~L~~L~l~~~~~~~~~~~----~l~~-l~~L~~L~l~~~~ 270 (370)
.+..++ +|+.|+++++. +..... .+..+|++|++|++++|.+.+.... .+.. .++|+.|++++|.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNN----LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHhcCCccccEeeecCCC----CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 666665 78888877621 110000 2233424778888887776553332 3333 3578888888777
Q ss_pred ccCcee---EEecCCCCccccEEEecCCC--C-----CceeEeCCCCCCCcceEeecCCcccC
Q 044637 271 YLERKL---VCVGCSSFPQLKILHLKSML--W-----LEEWTMGAGAMPKLESLILNPCAYLR 323 (370)
Q Consensus 271 ~~~~~~---~~~~~~~~~~L~~L~l~~~~--~-----l~~i~~~~~~l~~L~~L~l~~c~~l~ 323 (370)
+.+... ... ...+++|+.|++++|. . +..++..+..+++|+.|++++|....
T Consensus 237 l~~~~~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 765321 222 4566778888887753 0 22334456677777778887777443
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=2.4e-19 Score=175.38 Aligned_cols=275 Identities=17% Similarity=0.112 Sum_probs=136.5
Q ss_pred cCCeeeEEEcCCC-Ccc--cCCcccCCcCCCcEEeeCCCCCcc-----cChhhhcCCCCcEEecCCCc--C--ccccHHH
Q 044637 64 KFKHLRVLNLGSA-VLD--QYPPGLENFFYLKYLKLNIPSLKC-----LPSLLCTLINLQTLEMPSSY--I--DHSPEDI 131 (370)
Q Consensus 64 ~~~~L~~L~L~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~--~--~~lp~~i 131 (370)
.+++|++|++++| .++ .++..+..+++|++|++++|.++. ++.....+++|++|++++|. + ..++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4556666666655 233 233333355666666666655432 22222245566666666653 1 1122223
Q ss_pred hccccCcEEEccCCcC-CCCCCCCCCCCCCCceeccccC-------------------------------C-CCCccccC
Q 044637 132 WMMLKLMHLNFGSITL-PAPPKNNSSTLKNLIFISALHP-------------------------------G-SCTPDILG 178 (370)
Q Consensus 132 ~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~-------------------------------~-~~~~~~l~ 178 (370)
..+++|++|+++ +|. ...++..+.++++|++|++..+ . ..++..+.
T Consensus 208 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HHCTTCCEEECC-TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred HhCCCCcEEecC-CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 445667777766 442 2223333344445555542211 1 12222233
Q ss_pred CCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC--CCcc--------ccceEEEec------------------
Q 044637 179 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE--GNMR--------QLSRMILSE------------------ 230 (370)
Q Consensus 179 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~--------~L~~L~l~~------------------ 230 (370)
.+++|+.|++++|. .....+...+..+++|+.|++.+. +..+ +|++|.++-
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 56777888887775 222234445667788888888761 0000 344443310
Q ss_pred ---CCCCCCceEEEEeccCCCCCCccccc-CCCCCCeEEee--c----ccccC----ceeEEecCCCCccccEEEecCCC
Q 044637 231 ---YKFPPSLTQLSLSNTELMEDPMPTLE-ELPHLEVLKLK--Q----NSYLE----RKLVCVGCSSFPQLKILHLKSML 296 (370)
Q Consensus 231 ---~~~p~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~~~~----~~~~~~~~~~~~~L~~L~l~~~~ 296 (370)
..+ ++|++|.+..+.+++..+..++ .+++|+.|+++ + +.+++ ..+... +..+++|+.|++++
T Consensus 366 ~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~L~~L~L~~-- 441 (594)
T 2p1m_B 366 SVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-VEHCKDLRRLSLSG-- 441 (594)
T ss_dssp HHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH-HHHCTTCCEEECCS--
T ss_pred HHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH-HhhCCCccEEeecC--
Confidence 124 5555555544444333333332 35666666665 2 22221 011111 23455666666654
Q ss_pred CCce-eEeCCC-CCCCcceEeecCCcccCCCchhc-ccCCCCcEEEecCCC
Q 044637 297 WLEE-WTMGAG-AMPKLESLILNPCAYLRKLPEEL-WCIKSLCKLELHWPQ 344 (370)
Q Consensus 297 ~l~~-i~~~~~-~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~~~ 344 (370)
.+.. .+..+. .+++|+.|++++|......+..+ ..+++|++|++++|+
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 2321 111122 37889999998887533322223 568999999999997
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.4e-16 Score=140.14 Aligned_cols=171 Identities=18% Similarity=0.180 Sum_probs=109.1
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEc
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNF 142 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 142 (370)
.++++|++|++++|.++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEEC
Confidence 456677788888877776543 6777788888888887777665 777788888888887776665 3777778888888
Q ss_pred cCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcc
Q 044637 143 GSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 143 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 221 (370)
+ +|....+ ..+..+++|+.|++.++. ..+ ..+..+++|+.|++++|. .. .++
T Consensus 120 ~-~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~--l~-~~~--------------------- 172 (291)
T 1h6t_A 120 E-HNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--IS-DIV--------------------- 172 (291)
T ss_dssp T-TSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CC-CCG---------------------
T ss_pred C-CCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc--cc-cch---------------------
Confidence 7 5554444 245556666666655555 322 345555566666665552 11 111
Q ss_pred ccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccC
Q 044637 222 QLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLE 273 (370)
Q Consensus 222 ~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 273 (370)
.+..+ ++|++|++++|.+.+ . ..+..+++|+.|++++|.+..
T Consensus 173 -------~l~~l-~~L~~L~L~~N~i~~-l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 -------PLAGL-TKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -------GGTTC-TTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred -------hhcCC-CccCEEECCCCcCCC-C-hhhccCCCCCEEECcCCcccC
Confidence 12234 666666676676544 2 246777778888887776654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=8.3e-16 Score=133.66 Aligned_cols=174 Identities=19% Similarity=0.215 Sum_probs=119.6
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEcc
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFG 143 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 143 (370)
...++++++++.++.+|..+. +++++|++++|.+..++ ..++++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456789999999888887765 58999999999998664 468889999999999997776664 46788999999999
Q ss_pred CCcCCCCCC-CCCCCCCCCceeccccCC-CCCcc-ccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCc
Q 044637 144 SITLPAPPK-NNSSTLKNLIFISALHPG-SCTPD-ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNM 220 (370)
Q Consensus 144 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 220 (370)
++....++ ..+..+++|++|++.++. ..++. .+..+++|+.|+++++. . ..++..
T Consensus 92 -~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l-~~~~~~------------------ 149 (251)
T 3m19_A 92 -NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--L-QSIPAG------------------ 149 (251)
T ss_dssp -TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C-CCCCTT------------------
T ss_pred -CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--C-CccCHH------------------
Confidence 66644554 445677777777766665 43333 24566677777776663 2 122110
Q ss_pred cccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeeccccc
Q 044637 221 RQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYL 272 (370)
Q Consensus 221 ~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 272 (370)
.+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 150 --------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 150 --------AFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------HcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 22334 56666666666665555555666777777777766654
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=145.34 Aligned_cols=218 Identities=18% Similarity=0.143 Sum_probs=128.8
Q ss_pred CCcEEeeCCCCCc--ccCh--hhhcCCCCcEEecCCCcCc-cccHHH--hccccCcEEEccCCcC-CCCCC----CCCCC
Q 044637 90 YLKYLKLNIPSLK--CLPS--LLCTLINLQTLEMPSSYID-HSPEDI--WMMLKLMHLNFGSITL-PAPPK----NNSST 157 (370)
Q Consensus 90 ~L~~L~l~~~~~~--~lp~--~~~~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~~-~~~~~----~~l~~ 157 (370)
.++.+.+.++.+. .+.. ....+++|++|++++|.+. ..|..+ ..+++|++|+++ ++. ....+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEee-cccccchhhhhHHHHhhh
Confidence 3555666665554 1111 1223455666666666443 344444 566666666666 444 22211 12234
Q ss_pred CCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhc--HHHhhhccCCCCEEEEecCCCccccceEEEecCCC
Q 044637 158 LKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSG--VSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKF 233 (370)
Q Consensus 158 l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~ 233 (370)
+++|++|++.++. ...+..++.+++|+.|++++|. .... ++... ++..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~-------------------------~~~~l 196 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP--GLGERGLMAAL-------------------------CPHKF 196 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT--TCHHHHHHTTS-------------------------CTTSS
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC--CccchhhhHHH-------------------------hhhcC
Confidence 5556666655544 2223445555556666665553 1111 11110 23456
Q ss_pred CCCceEEEEeccCCCCCCcc----cccCCCCCCeEEeecccccCceeEEecCCCC---ccccEEEecCCCCCceeEeCCC
Q 044637 234 PPSLTQLSLSNTELMEDPMP----TLEELPHLEVLKLKQNSYLERKLVCVGCSSF---PQLKILHLKSMLWLEEWTMGAG 306 (370)
Q Consensus 234 p~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~i~~~~~ 306 (370)
++|++|++++|.+.. .+. .++.+++|++|++++|.+.+.. +.. +..+ ++|++|++++| .++.+|..+.
T Consensus 197 -~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~ 271 (310)
T 4glp_A 197 -PAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-NPS-APRCMWSSALNSLNLSFA-GLEQVPKGLP 271 (310)
T ss_dssp -CCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSC-CSSCCCCTTCCCEECCSS-CCCSCCSCCC
T ss_pred -CCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc-hhh-HHhccCcCcCCEEECCCC-CCCchhhhhc
Confidence 788888888887742 222 2467889999999988887653 222 3333 78999999884 5778876553
Q ss_pred CCCCcceEeecCCcccCCCchhcccCCCCcEEEecCCC
Q 044637 307 AMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 344 (370)
Q Consensus 307 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~ 344 (370)
++|+.|++++|... .+|. +..+++|+.|++.+|+
T Consensus 272 --~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 --AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp --SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTT
T ss_pred --CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCC
Confidence 89999999998744 4554 5678999999999886
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=7.7e-16 Score=140.58 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=32.6
Q ss_pred eeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCc-ccCh-hhhcCCCCcEE-ecCCCcCcccc-HHHhccccCcEEE
Q 044637 67 HLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLK-CLPS-LLCTLINLQTL-EMPSSYIDHSP-EDIWMMLKLMHLN 141 (370)
Q Consensus 67 ~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~-~~~~l~~L~~L-~l~~~~~~~lp-~~i~~l~~L~~L~ 141 (370)
++++|+|++|.++.+|+ .|..+++|++|+|++|.+. .+|. .+.++++|+.+ .+..+.+..++ ..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 44445555544444433 2444445555555544442 2322 23444444332 22223444443 2234444555555
Q ss_pred cc
Q 044637 142 FG 143 (370)
Q Consensus 142 l~ 143 (370)
++
T Consensus 111 l~ 112 (350)
T 4ay9_X 111 IS 112 (350)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=8.2e-16 Score=149.71 Aligned_cols=170 Identities=21% Similarity=0.234 Sum_probs=78.6
Q ss_pred CcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCceecc
Q 044637 87 NFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISA 166 (370)
Q Consensus 87 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 166 (370)
.+++|++|+++++.+..+| .++.+++|+.|++++|.+..+++ +..+++|++|+++ +|....++ .+..+++|+.|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls-~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD-ENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC-SSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc-CCCCCCCh-hhccCCCCCEEEe
Confidence 3444444444444444443 24444444444444444444433 4444444444444 33322222 3444444444444
Q ss_pred ccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEecc
Q 044637 167 LHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNT 245 (370)
Q Consensus 167 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~ 245 (370)
.++. .. +..+..+++|+.|++++|. .. .+ ..+..+++|+.|+++++. +..+. .+..+ ++|+.|++++|
T Consensus 117 s~N~l~~-l~~l~~l~~L~~L~Ls~N~--l~-~l-~~l~~l~~L~~L~Ls~N~----l~~~~-~l~~l-~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNGISD-INGLVHLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLEDNQ----ISDIV-PLAGL-TKLQNLYLSKN 185 (605)
T ss_dssp TTSCCCC-CGGGGGCTTCSEEECCSSC--CC-CC-GGGGSCTTCSEEECCSSC----CCCCG-GGTTC-TTCCEEECCSS
T ss_pred cCCCCCC-CccccCCCccCEEECCCCc--cC-Cc-hhhcccCCCCEEECcCCc----CCCch-hhccC-CCCCEEECcCC
Confidence 4443 22 1234444555555555542 11 11 334444444444444311 11100 13345 66677777777
Q ss_pred CCCCCCcccccCCCCCCeEEeecccccC
Q 044637 246 ELMEDPMPTLEELPHLEVLKLKQNSYLE 273 (370)
Q Consensus 246 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 273 (370)
.+.+. ..+..+++|+.|++++|.+.+
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66442 356677777777777776654
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2.7e-16 Score=153.06 Aligned_cols=188 Identities=20% Similarity=0.165 Sum_probs=140.1
Q ss_pred cCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccc
Q 044637 88 FFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISAL 167 (370)
Q Consensus 88 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 167 (370)
+..+..+.++.+.+..++ .+..+.+|+.|++++|.+..+| .+..+++|+.|+++ +|....++. +..+++|+.|++.
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls-~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN-GNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECT-TSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEee-CCCCCCChh-hccCCCCCEEECc
Confidence 345556677777777554 3578899999999999888887 68899999999999 777666665 8899999999988
Q ss_pred cCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccC
Q 044637 168 HPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTE 246 (370)
Q Consensus 168 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~ 246 (370)
++. ..+ ..+..+++|+.|++++|. . ..+ ..+..+++|+.|+++++. +..+. .+..+ ++|+.|+|++|.
T Consensus 96 ~N~l~~l-~~l~~l~~L~~L~Ls~N~--l-~~l-~~l~~l~~L~~L~Ls~N~----l~~l~-~l~~l-~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 96 ENKIKDL-SSLKDLKKLKSLSLEHNG--I-SDI-NGLVHLPQLESLYLGNNK----ITDIT-VLSRL-TKLDTLSLEDNQ 164 (605)
T ss_dssp SSCCCCC-TTSTTCTTCCEEECTTSC--C-CCC-GGGGGCTTCSEEECCSSC----CCCCG-GGGSC-TTCSEEECCSSC
T ss_pred CCCCCCC-hhhccCCCCCEEEecCCC--C-CCC-ccccCCCccCEEECCCCc----cCCch-hhccc-CCCCEEECcCCc
Confidence 888 444 478899999999999985 3 233 457788888888887622 22211 45567 788888888887
Q ss_pred CCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCC
Q 044637 247 LMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSML 296 (370)
Q Consensus 247 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 296 (370)
+.+..+ +..+++|+.|+|++|.+.+. .. +..+++|+.|+|++|+
T Consensus 165 l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 165 ISDIVP--LAGLTKLQNLYLSKNHISDL---RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBC---GG-GTTCTTCSEEECCSEE
T ss_pred CCCchh--hccCCCCCEEECcCCCCCCC---hH-HccCCCCCEEEccCCc
Confidence 755444 77888888888888877653 22 6677888888888753
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.3e-15 Score=128.50 Aligned_cols=175 Identities=19% Similarity=0.196 Sum_probs=107.4
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCCc
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSIT 146 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 146 (370)
+.++.+++.++.+|..+ .++|++|+++++.++.++. .++.+++|++|++++|.+..+|.. +..+++|++|+++ ++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CC
Confidence 45566666666666544 3477777777777776654 356777777777777766666644 4667777777777 55
Q ss_pred CCCCCCC-CCCCCCCCceeccccCC-CCCcc-ccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcccc
Q 044637 147 LPAPPKN-NSSTLKNLIFISALHPG-SCTPD-ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQL 223 (370)
Q Consensus 147 ~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 223 (370)
....++. .+.++++|++|++.++. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|++++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~----- 159 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP----- 159 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC-----
Confidence 5444443 35677777777766665 33333 35677788888888774 333222335556566666555422
Q ss_pred ceEEEecCCCCCCceEEEEeccCCCCCCcccccCCC
Q 044637 224 SRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELP 259 (370)
Q Consensus 224 ~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~ 259 (370)
+...+ +.|++|+++.|.+.+.+|..++.++
T Consensus 160 -----~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 -----WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence 33344 5666666666666666665555443
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=8.5e-16 Score=134.48 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=121.6
Q ss_pred cCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEcc
Q 044637 64 KFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 143 (370)
.+..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4556677778888877665 4678889999999999888887 78888999999999988888876 8888999999998
Q ss_pred CCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 144 SITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 144 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
+|....++... . ++|+.|++.++. ... ..+..+++|+.|++++|. ...++ .+
T Consensus 94 -~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~---i~~~~-~l------------------- 146 (263)
T 1xeu_A 94 -RNRLKNLNGIP-S-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK---LKSIV-ML------------------- 146 (263)
T ss_dssp -SSCCSCCTTCC-C-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSC---CCBCG-GG-------------------
T ss_pred -CCccCCcCccc-c-CcccEEEccCCccCCC-hhhcCcccccEEECCCCc---CCCCh-HH-------------------
Confidence 76655555432 2 777777776666 333 357777777777777773 22222 22
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCc
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLER 274 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 274 (370)
..+ ++|++|++++|.+.+. ..++.+++|+.|++++|.+...
T Consensus 147 --------~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 147 --------GFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --------GGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --------ccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 334 6667777777766554 5567788888888887776543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=2.9e-15 Score=144.40 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=135.3
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCC
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 145 (370)
.++++|++++|.++.+|..+ +++|++|++++|.++.+| +.+++|++|++++|.+..+|. +.. +|++|+++ +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls-~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD-N 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC-S
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC-C
Confidence 48999999999999888866 379999999999999999 568999999999998888887 554 99999999 7
Q ss_pred cCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccc
Q 044637 146 TLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLS 224 (370)
Q Consensus 146 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~ 224 (370)
|....+|. .+++|+.|++.++. ..+|. .+++|+.|++++|. ...+|. +. ++|+.|+++++. ++
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~N~----L~ 193 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVSTNL----LE 193 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCSSC----CS
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcCCC----CC
Confidence 77666777 68899999988887 55665 57899999999984 333555 44 778888887622 22
Q ss_pred eEEEecCCCCCCc-------eEEEEeccCCCCCCcccccCCCCCCeEEeecccccCc
Q 044637 225 RMILSEYKFPPSL-------TQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLER 274 (370)
Q Consensus 225 ~L~l~~~~~p~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 274 (370)
.+. .++.+| +.|++++|.+. .+|..+..+++|+.|++++|.+.+.
T Consensus 194 ~lp----~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 194 SLP----AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SCC----CCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred chh----hHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 111 122355 77888877764 4566666677888888877777653
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=7.3e-15 Score=127.63 Aligned_cols=176 Identities=16% Similarity=0.179 Sum_probs=108.1
Q ss_pred CCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCC-CCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEE
Q 044637 112 INLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPP-KNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRI 188 (370)
Q Consensus 112 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l 188 (370)
...++++++++.+..+|..+. ++++.|+++ ++....+ +..+.++++|++|++.++. ...+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456788888887888876654 578888888 6553333 3456677777777766655 223334566666666666
Q ss_pred ecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeec
Q 044637 189 SGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQ 268 (370)
Q Consensus 189 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 268 (370)
+++. .. .++.. .+..+ ++|++|++++|.+....+..++.+++|+.|++++
T Consensus 91 ~~n~--l~-~~~~~--------------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 91 ANNQ--LA-SLPLG--------------------------VFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp TTSC--CC-CCCTT--------------------------TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCc--cc-ccChh--------------------------Hhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 6663 11 11110 23344 6667777777766555555566777777777777
Q ss_pred ccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccC
Q 044637 269 NSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLR 323 (370)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~ 323 (370)
|.+.+.. +.. ++.+++|++|+++++ .++.++. .+..+++|+.|++++|+...
T Consensus 141 N~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 141 NQLQSIP-AGA-FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCCCC-TTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccC-HHH-cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7665422 212 556677777777773 4665554 45667777777777776543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=2e-15 Score=145.48 Aligned_cols=188 Identities=16% Similarity=0.100 Sum_probs=140.9
Q ss_pred CCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCCCCCceecccc
Q 044637 89 FYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALH 168 (370)
Q Consensus 89 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 168 (370)
.+|++|+++++.++.+|..+ +++|++|++++|.+..+| ..+++|++|+++ +|....+|. +.+ +|++|++.+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls-~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDAC-DNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECC-SSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEcc-CCCCCCcch-hhc--CCCEEECCC
Confidence 38999999999999998766 379999999999888898 468999999999 777556777 555 888888777
Q ss_pred CC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCC
Q 044637 169 PG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTEL 247 (370)
Q Consensus 169 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~ 247 (370)
+. ..+|. .+++|+.|++++|. ...+|. .+ ++|++|++++|.+
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~---l~~lp~------------------------------~l-~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQ---LTMLPE------------------------------LP-TSLEVLSVRNNQL 172 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC---CSCCCC------------------------------CC-TTCCEEECCSSCC
T ss_pred CcCCCCCC---cCccccEEeCCCCc---cCcCCC------------------------------cC-CCcCEEECCCCCC
Confidence 77 55555 57788888888873 222221 12 7788888888887
Q ss_pred CCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccc-------cEEEecCCCCCceeEeCCCCCCCcceEeecCCc
Q 044637 248 MEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQL-------KILHLKSMLWLEEWTMGAGAMPKLESLILNPCA 320 (370)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~ 320 (370)
.+ +|. +. ++|+.|++++|.++... .. . ++| +.|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~~lp--~~--~--~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLESLP--AV--P--VRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCSSCC--CC--C----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CC-cch-hh--CCCCEEECcCCCCCchh--hH--H--HhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 55 454 54 88999999988876322 11 1 156 9999998 4688888888889999999999998
Q ss_pred ccCCCchhcccCC
Q 044637 321 YLRKLPEELWCIK 333 (370)
Q Consensus 321 ~l~~l~~~~~~l~ 333 (370)
..+.+|..+..++
T Consensus 242 l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 242 LSSRIRESLSQQT 254 (571)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHhh
Confidence 7776776665543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.1e-14 Score=129.28 Aligned_cols=145 Identities=24% Similarity=0.233 Sum_probs=122.4
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+| .++.+++|++|++++|.+..++ .+..+++|++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEE
Confidence 6789999999999999997776 899999999999999999877 4899999999999999888875 688999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN 216 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 216 (370)
++ +|....+ ..++.+++|+.|++.++. ...+. +..+++|+.|++++|. ...++ .+..+++|+.|++++
T Consensus 141 l~-~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~---i~~l~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 141 LG-NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH---ISDLR-ALAGLKNLDVLELFS 209 (291)
T ss_dssp CC-SSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCBCG-GGTTCTTCSEEEEEE
T ss_pred cc-CCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc---CCCCh-hhccCCCCCEEECcC
Confidence 99 7775555 568899999999988888 55554 8999999999999994 33343 366677777776665
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.7e-15 Score=123.97 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=75.8
Q ss_pred CCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCC-CCCCCCCCCCCCCcee
Q 044637 86 ENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLP-APPKNNSSTLKNLIFI 164 (370)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L 164 (370)
..+++|++|+++++.+..+| .+..+++|++|++++|.+..++ .+..+++|++|+++ +|.. ...+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEE
Confidence 44566666666666666666 5666666666666666544443 45566666666666 4432 2233344444444444
Q ss_pred ccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEE
Q 044637 165 SALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSL 242 (370)
Q Consensus 165 ~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l 242 (370)
++.++. ...+..+..+++|+.|++++|. ....++ .+..+ ++|++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~--~i~~~~----------------------------~l~~l-~~L~~L~l 166 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDIM----------------------------PLKTL-PELKSLNI 166 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT--BCCCCG----------------------------GGGGC-SSCCEEEC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC--CccccH----------------------------hhcCC-CCCCEEEC
Confidence 433333 1223344444455555554442 122221 12233 55555555
Q ss_pred eccCCCCCCcccccCCCCCCeEEeeccccc
Q 044637 243 SNTELMEDPMPTLEELPHLEVLKLKQNSYL 272 (370)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 272 (370)
++|.+.+ .+ .+..+++|+.|++++|.+.
T Consensus 167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 5555433 11 4556666666666666543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.7e-15 Score=126.72 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=114.6
Q ss_pred ccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcc-ccHHHhccccCcEEE
Q 044637 63 KKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDH-SPEDIWMMLKLMHLN 141 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~ 141 (370)
.++++|++|++++|.++.+| .+..+++|++|++++|.++.++ .++.+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 56788999999999988777 6888999999999999777665 78889999999999997764 566788899999999
Q ss_pred ccCCcC-CCCCCCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec
Q 044637 142 FGSITL-PAPPKNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN 216 (370)
Q Consensus 142 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 216 (370)
++ +|. ....+..++.+++|++|++.++. ..++ .+..+++|+.|++++|. ...++ .+..+++|+.|++++
T Consensus 119 Ls-~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~---i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 119 IS-HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG---VHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CC-SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC---CCCCT-TGGGCSSCCEEEECB
T ss_pred ec-CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC---CcChH-HhccCCCCCEEEeeC
Confidence 99 665 33456678899999999988886 4444 68889999999999884 23333 555666666665554
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.5e-14 Score=126.47 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=119.6
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLN 141 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 141 (370)
+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. ++.+++|++|++++|.+..+|.. .. ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI-PS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC-CC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc-cc-CcccEEE
Confidence 567899999999999999877 68899999999999999998887 99999999999999988888753 33 9999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN 216 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 216 (370)
++ +|....++ .+..+++|+.|++.++. ..++ .+..+++|+.|++++|. ..+. ..+..+++|+.|++++
T Consensus 113 L~-~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~--i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 113 LD-NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE--ITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CC-SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC--CCBC--TTSTTCCCCCEEEEEE
T ss_pred cc-CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc--Ccch--HHhccCCCCCEEeCCC
Confidence 99 77766664 58899999999988888 5554 68899999999999995 3332 5566666666666665
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.8e-14 Score=120.28 Aligned_cols=98 Identities=12% Similarity=0.207 Sum_probs=61.3
Q ss_pred CcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCCcCCCCCCCC-CCCCCCCceecccc
Q 044637 91 LKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSITLPAPPKNN-SSTLKNLIFISALH 168 (370)
Q Consensus 91 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~ 168 (370)
-+.++.+++.++.+|..+ .++|++|++++|.+..++.. +..+++|++|+++ ++....++.. +..+++|++|++.+
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCC
Confidence 357788888888888554 45899999999977777754 5788889999988 6654444432 35555555555444
Q ss_pred CC-CCCcc-ccCCCCCccEEEEecc
Q 044637 169 PG-SCTPD-ILGRLPNVQTLRISGD 191 (370)
Q Consensus 169 ~~-~~~~~-~l~~l~~L~~L~l~~~ 191 (370)
+. ..++. .+..+++|+.|+++++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHhHhcCccCCCEEEcCCC
Confidence 44 22222 2344444444444444
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.2e-14 Score=118.27 Aligned_cols=128 Identities=20% Similarity=0.120 Sum_probs=105.3
Q ss_pred ccCCeeeEEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcc-ccHHHhccccCcE
Q 044637 63 KKFKHLRVLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDH-SPEDIWMMLKLMH 139 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 139 (370)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45588999999999998 8888889999999999999999987 688999999999999998776 7777778999999
Q ss_pred EEccCCcCCCCCC--CCCCCCCCCceeccccCC-CCCcc----ccCCCCCccEEEEeccc
Q 044637 140 LNFGSITLPAPPK--NNSSTLKNLIFISALHPG-SCTPD----ILGRLPNVQTLRISGDL 192 (370)
Q Consensus 140 L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~~~----~l~~l~~L~~L~l~~~~ 192 (370)
|+++ +|....++ ..+..+++|+.|++.++. ...+. .+..+++|+.|++.++.
T Consensus 100 L~Ls-~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLS-GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECB-SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred Eecc-CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999 77766654 567778888888876666 44443 56777778877777763
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=8.4e-14 Score=118.39 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=59.5
Q ss_pred EEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccCCcC
Q 044637 70 VLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGSITL 147 (370)
Q Consensus 70 ~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 147 (370)
+++.+++.++.+|..+. ++|+.|++++|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|+++ ++.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCc
Confidence 45555555555554433 355555555555554433 445555555555555544443 3445555555555555 444
Q ss_pred CCCCCCC-CCCCCCCceeccccCC--CCCccccCCCCCccEEEEecc
Q 044637 148 PAPPKNN-SSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 148 ~~~~~~~-l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 191 (370)
...+|.. +..+++|++|++.++. ...+..+..+++|+.|++++|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 3344433 3445555555544444 222334455555555555555
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1e-13 Score=118.65 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=52.2
Q ss_pred EEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCCcC
Q 044637 70 VLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSITL 147 (370)
Q Consensus 70 ~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 147 (370)
+++.+++.++.+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|+++ ++.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCc
Confidence 34444444444444332 3445555555444433 33344444555555555444444422 2444455555554 333
Q ss_pred CCCCCC-CCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecc
Q 044637 148 PAPPKN-NSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 148 ~~~~~~-~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 191 (370)
...++. .+..+++|++|++.++. ..+|..+..+++|+.|++++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence 333322 23444444444444433 444444444444444444444
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=7.3e-17 Score=156.11 Aligned_cols=175 Identities=21% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCc--------------CccccHHHhccccCcEEE-ccCCcCCCC
Q 044637 86 ENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSY--------------IDHSPEDIWMMLKLMHLN-FGSITLPAP 150 (370)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~--------------~~~lp~~i~~l~~L~~L~-l~~~~~~~~ 150 (370)
..+++|+.|++++|.++.+|..++.|++|+.|+++++. ....|..++.+++|+.|+ ++ .+....
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcccch
Confidence 45677777777777777777777777777777776552 233455667777777777 33 221000
Q ss_pred CCC------CCCC--CCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCcc
Q 044637 151 PKN------NSST--LKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMR 221 (370)
Q Consensus 151 ~~~------~l~~--l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 221 (370)
++. .+.. ...|+.|++.++. ..+|. ++.+++|+.|++++|. ...+|..++.+++|+.|++++..
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~N~--- 497 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR---LRALPPALAALRCLEVLQASDNA--- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC---CCCCCGGGGGCTTCCEEECCSSC---
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc---ccccchhhhcCCCCCEEECCCCC---
Confidence 000 0000 1247777777666 55555 7778888888888873 33666666665444444444311
Q ss_pred ccceEEEecCCCCCCceEEEEeccCCCCCC-cccccCCCCCCeEEeecccc
Q 044637 222 QLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLEELPHLEVLKLKQNSY 271 (370)
Q Consensus 222 ~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 271 (370)
++.+. .+..+ ++|++|++++|.+.+.. |..++.+++|+.|++++|.+
T Consensus 498 -l~~lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 498 -LENVD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -CCCCG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred -CCCCc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 11111 22233 44444444444443332 44444444444444444444
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=8.9e-14 Score=118.24 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=82.8
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC--hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCC
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP--SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSI 145 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 145 (370)
++++++++.++.+|..+. ..+++|++++|.++.++ ..++.+++|++|++++|.+..++. .+..+++|++|+++ +
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-S 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-S
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-C
Confidence 366677666666665543 34567777777766552 236667777777777776665553 46667777777777 5
Q ss_pred cCCCCCC-CCCCCCCCCceeccccCC-C-CCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEe
Q 044637 146 TLPAPPK-NNSSTLKNLIFISALHPG-S-CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 215 (370)
Q Consensus 146 ~~~~~~~-~~l~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 215 (370)
+....++ ..+..+++|++|++.++. . ..+..+..+++|+.|++++|. .....+..+..+++|+.|+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ--ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC--CCCBCTTTTTTCTTCCEEECC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc--CCEECHHHhcCCCCCCEEEec
Confidence 5533333 335666667777666655 2 234556666677777776663 333334444444444444443
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=6.6e-15 Score=146.68 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=97.1
Q ss_pred ccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCCCCC
Q 044637 79 DQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNSSTL 158 (370)
Q Consensus 79 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l 158 (370)
...+..+..+.+|++|+|++|.+..+|..+..+++|++|+|++|.+..+|..++.+++|++|+++ +|....+|..++++
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPAELGSC 292 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSCCSSGGGG
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCccChhhcCC
Confidence 34466677888899999999888888888888899999999998888888888889999999998 76666888888888
Q ss_pred CCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhc
Q 044637 159 KNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQ 205 (370)
Q Consensus 159 ~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 205 (370)
++|++|++.++. ..+|..++.+++|+.|++++|. ..+..|..+..
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~--l~~~~p~~~~~ 338 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP--LEKQFLKILTE 338 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC--CCSHHHHHHHH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc--cCCCChHHHhh
Confidence 999999887777 7778888889999999999885 55566665544
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.8e-14 Score=114.62 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=82.2
Q ss_pred ccCCeeeEEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCcc-ccHHHhccccCcE
Q 044637 63 KKFKHLRVLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDH-SPEDIWMMLKLMH 139 (370)
Q Consensus 63 ~~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 139 (370)
...++++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45688999999999998 8888889999999999999999987 688999999999999998776 7777778999999
Q ss_pred EEccCCcCCCCCC--CCCCCCCCCceeccc
Q 044637 140 LNFGSITLPAPPK--NNSSTLKNLIFISAL 167 (370)
Q Consensus 140 L~l~~~~~~~~~~--~~l~~l~~L~~L~l~ 167 (370)
|+++ +|....++ ..++.+++|++|++.
T Consensus 93 L~ls-~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 93 LNLS-GNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp EECT-TSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred EECC-CCcCCChHHHHHHhhCCCCCEEeCc
Confidence 9999 66544432 334444444444433
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=7.5e-14 Score=127.91 Aligned_cols=173 Identities=21% Similarity=0.240 Sum_probs=111.1
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChh-hh-cCCCCcEEecCCCcCccccH-HHhccccCcEEEccCC
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSL-LC-TLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSI 145 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~-~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 145 (370)
++++++++.++.+|..+. ..+++|++++|.++.++.. +. .+++|++|++++|.+..++. .+..+++|++|+++ +
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-S 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-S
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-C
Confidence 577888888887777654 3678888888888876544 44 78888888888887777764 47788888888888 6
Q ss_pred cCCCCCC-CCCCCCCCCceeccccCC-CC-CccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccc
Q 044637 146 TLPAPPK-NNSSTLKNLIFISALHPG-SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQ 222 (370)
Q Consensus 146 ~~~~~~~-~~l~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (370)
+....++ ..+..+++|++|++.++. .. .+..+..+++|+.|++++|. ...++..+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~----------------- 157 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ---ISRFPVELIK----------------- 157 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCSCCGGGTC-----------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc---CCeeCHHHhc-----------------
Confidence 6544444 346777888888877666 32 34567777788888887773 2233322100
Q ss_pred cceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCC--CCeEEeecccc
Q 044637 223 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPH--LEVLKLKQNSY 271 (370)
Q Consensus 223 L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 271 (370)
.+..+ ++|+.|++++|.+....+..+..++. ++.|++.+|.+
T Consensus 158 ------~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 158 ------DGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ------CcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 00223 55666666666655444444555555 35666665544
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=2e-13 Score=116.80 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CCeeeEEEcCCCCccc-CCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-HhccccCcEEE
Q 044637 65 FKHLRVLNLGSAVLDQ-YPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLN 141 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 141 (370)
.++|++|++++|.++. .|..+..+++|++|++++|.+..+|. .+..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 3789999999999994 46778999999999999999998875 468999999999999988888765 57899999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEeccc
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDL 192 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 192 (370)
++ ++....+|..+..+++|++|++.++. ..++ ..+..+++|+.|++.+|.
T Consensus 119 Ls-~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 119 MC-CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CC-SSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cc-CCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99 88877899999999999999988887 5554 457889999999999985
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=4.3e-13 Score=114.00 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=108.5
Q ss_pred CeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEc
Q 044637 66 KHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNF 142 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 142 (370)
+.+++|++++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 67999999999999555 4789999999999999999966 77899999999999999999898866 578999999999
Q ss_pred cCCcCCCCC-CCCCCCCCCCceeccccCC-CCCc-cccCCCCCccEEEEeccc
Q 044637 143 GSITLPAPP-KNNSSTLKNLIFISALHPG-SCTP-DILGRLPNVQTLRISGDL 192 (370)
Q Consensus 143 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 192 (370)
+ ++....+ +..+..+++|++|++.++. ..++ ..+..+++|+.|++++|.
T Consensus 112 ~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 N-ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp C-SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9 7664444 6778999999999988888 4444 458889999999999986
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=113.54 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=107.8
Q ss_pred CeeeEEEcCCCCcccC-C-cccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-HhccccCcEEE
Q 044637 66 KHLRVLNLGSAVLDQY-P-PGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 141 (370)
+.+++|++++|.++.+ + ..+..+++|++|++++|.++.++. .++.+++|++|++++|.+..++.. +..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 4578999999999955 3 347899999999999999997764 799999999999999988887754 78899999999
Q ss_pred ccCCcCC-CCCCCCCCCCCCCceeccccCC-CCC-ccccCCCCCccEEEEeccc
Q 044637 142 FGSITLP-APPKNNSSTLKNLIFISALHPG-SCT-PDILGRLPNVQTLRISGDL 192 (370)
Q Consensus 142 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~ 192 (370)
++ ++.. ...|..+..+++|++|++.++. ..+ +..+..+++|+.|++++|.
T Consensus 112 Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LR-SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CT-TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CC-CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99 6664 4447788999999999988887 444 7788999999999999986
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=5.6e-14 Score=115.13 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=102.1
Q ss_pred hccCCeeeEEEcCCCCcccCCcccCCcC-CCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHH-hccccCcE
Q 044637 62 CKKFKHLRVLNLGSAVLDQYPPGLENFF-YLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDI-WMMLKLMH 139 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~ 139 (370)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|+.+ +.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4577899999999999987765 55544 999999999999987 57889999999999999888888655 88999999
Q ss_pred EEccCCcCCCCCCC--CCCCCCCCceeccccCC-CCCccc----cCCCCCccEEEEeccc
Q 044637 140 LNFGSITLPAPPKN--NSSTLKNLIFISALHPG-SCTPDI----LGRLPNVQTLRISGDL 192 (370)
Q Consensus 140 L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~~ 192 (370)
|+++ +|....+|. .+..+++|+.|++.++. ...+.. +..+++|+.|+++.+.
T Consensus 93 L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999 776666665 67777888888876666 444543 6677777777777764
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=6e-15 Score=123.39 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=103.1
Q ss_pred hccCCeeeEEEcCCCCcc-cCC------cccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhcc
Q 044637 62 CKKFKHLRVLNLGSAVLD-QYP------PGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMM 134 (370)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~-~~~------~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l 134 (370)
+.....++.++++++.+. ..| ..+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..+..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 344555555555555544 333 36777888888888888888777 7788888888888888777787777777
Q ss_pred ccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCc--cccCCCCCccEEEEecccccchhcHH----------H
Q 044637 135 LKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTP--DILGRLPNVQTLRISGDLSYYHSGVS----------K 201 (370)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~----------~ 201 (370)
++|++|+++ +|....+| .+..+++|++|++.++. ..++ ..+..+++|+.|++++|. .....| .
T Consensus 93 ~~L~~L~L~-~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 93 DTLEELWIS-YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHCSEEEEE-EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHH
T ss_pred CcCCEEECc-CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc--cccccccccchHHHHHH
Confidence 888888888 66655555 56677788888877666 4433 367888899999999885 333322 2
Q ss_pred hhhccCCCCEEE
Q 044637 202 SLCQLHKLECLK 213 (370)
Q Consensus 202 ~l~~l~~L~~L~ 213 (370)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 366777777765
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=4.7e-13 Score=108.68 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=100.5
Q ss_pred hhHHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcc-cChhhhcCCCCcEEecCCCcCcccc--HHHhc
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKC-LPSLLCTLINLQTLEMPSSYIDHSP--EDIWM 133 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~lp--~~i~~ 133 (370)
.++..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+..+| ..+..
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 118 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhc
Confidence 3445568899999999999999866 778999999999999999996 7888888999999999999888876 67889
Q ss_pred cccCcEEEccCCcCCCCCCC----CCCCCCCCceeccccCC-CCCcc
Q 044637 134 MLKLMHLNFGSITLPAPPKN----NSSTLKNLIFISALHPG-SCTPD 175 (370)
Q Consensus 134 l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~-~~~~~ 175 (370)
+++|++|+++ +|....++. .+..+++|++|++..+. .+.+.
T Consensus 119 l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 119 LECLKSLDLF-NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CSCCCEEECC-SSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCCCEEEee-CCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999999999 777666665 78899999999988877 55543
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=119.95 Aligned_cols=148 Identities=19% Similarity=0.122 Sum_probs=116.5
Q ss_pred CeeeEEEcCCCCcccCCc-ccC-CcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEE
Q 044637 66 KHLRVLNLGSAVLDQYPP-GLE-NFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLN 141 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 141 (370)
+.+++|+|++|.++.++. .+. .+++|++|++++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 458999999999995554 455 8999999999999999776 568999999999999998888775 478899999999
Q ss_pred ccCCcCCCCC-CCCCCCCCCCceeccccCC-CCCcccc----CCCCCccEEEEecccccchhcHHHhhhccCC--CCEEE
Q 044637 142 FGSITLPAPP-KNNSSTLKNLIFISALHPG-SCTPDIL----GRLPNVQTLRISGDLSYYHSGVSKSLCQLHK--LECLK 213 (370)
Q Consensus 142 l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~--L~~L~ 213 (370)
++ +|....+ +..+..+++|+.|++.++. ..++..+ ..+++|+.|++++|. ....-+..+..++. ++.|+
T Consensus 119 L~-~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 119 LY-NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK--LKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CC-SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC--CCCCCHHHHHHSCHHHHTTEE
T ss_pred CC-CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC--CCccCHHHhhhccHhhcceEE
Confidence 99 7664444 6778999999999988888 6666554 578999999999985 43333456666665 36677
Q ss_pred Eec
Q 044637 214 LVN 216 (370)
Q Consensus 214 l~~ 216 (370)
+.+
T Consensus 196 l~~ 198 (361)
T 2xot_A 196 LHN 198 (361)
T ss_dssp CCS
T ss_pred ecC
Confidence 765
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.7e-12 Score=107.85 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=97.8
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChh--hhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccCC
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSL--LCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGSI 145 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 145 (370)
++++++++.++.+|..+.. +|++|++++|.++.++.. ++.+++|++|++++|.+..+ |..+..+++|++|+++ +
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-E 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-S
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-C
Confidence 6889999999888876654 899999999999987753 88999999999999987766 5678889999999999 6
Q ss_pred cCCCCC-CCCCCCCCCCceeccccCC--CCCccccCCCCCccEEEEeccc
Q 044637 146 TLPAPP-KNNSSTLKNLIFISALHPG--SCTPDILGRLPNVQTLRISGDL 192 (370)
Q Consensus 146 ~~~~~~-~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 192 (370)
+....+ +..+..+++|++|++.++. ...+..+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 664444 4457888888988877777 3446677888888888888875
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=4.4e-12 Score=105.37 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=100.9
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccCCcC
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGSITL 147 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 147 (370)
++++++++.++.+|..+. ++|++|++++|.++.+|..+..+++|++|++++|.+..++. .+..+++|++|+++ ++.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCc
Confidence 578999999988887664 58999999999999999899999999999999998887774 57889999999999 776
Q ss_pred CCCCC-CCCCCCCCCceeccccCC-CCCcc-ccCCCCCccEEEEeccc
Q 044637 148 PAPPK-NNSSTLKNLIFISALHPG-SCTPD-ILGRLPNVQTLRISGDL 192 (370)
Q Consensus 148 ~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 192 (370)
...++ ..+..+++|++|++.++. ..++. .+..+++|+.|++.++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 55554 468889999999988777 55554 47788899999998885
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=1.1e-12 Score=126.75 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=109.8
Q ss_pred HHHhccCCeeeEEE-cCCCCcccCCc------ccCC--cCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccH
Q 044637 59 ENFCKKFKHLRVLN-LGSAVLDQYPP------GLEN--FFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPE 129 (370)
Q Consensus 59 ~~~~~~~~~L~~L~-L~~~~~~~~~~------~~~~--l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~ 129 (370)
+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. ++.+++|+.|++++|.+..+|.
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch
Confidence 45566777788777 45443221111 0111 1258889999998888886 8889999999999998888888
Q ss_pred HHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCC--ccccCCCCCccEEEEecccccchhc---HHHhh
Q 044637 130 DIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCT--PDILGRLPNVQTLRISGDLSYYHSG---VSKSL 203 (370)
Q Consensus 130 ~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~l 203 (370)
.++.+++|++|+++ +|....+| .++++++|+.|++.++. ... |..++.+++|+.|++++|. ..+. ....+
T Consensus 481 ~~~~l~~L~~L~Ls-~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~--l~~~~~~~~~l~ 556 (567)
T 1dce_A 481 ALAALRCLEVLQAS-DNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS--LCQEEGIQERLA 556 (567)
T ss_dssp GGGGCTTCCEEECC-SSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG--GGGSSSCTTHHH
T ss_pred hhhcCCCCCEEECC-CCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc--CCCCccHHHHHH
Confidence 88899999999999 77766677 78889999999987777 555 7888899999999999885 3222 22334
Q ss_pred hccCCCCEEEE
Q 044637 204 CQLHKLECLKL 214 (370)
Q Consensus 204 ~~l~~L~~L~l 214 (370)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 55788888753
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=3.4e-13 Score=107.18 Aligned_cols=125 Identities=15% Similarity=0.031 Sum_probs=103.6
Q ss_pred CcCCCcEEeeCCCCCc--ccChhhhcCCCCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCC-CCCCCCCCCCCce
Q 044637 87 NFFYLKYLKLNIPSLK--CLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAP-PKNNSSTLKNLIF 163 (370)
Q Consensus 87 ~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 163 (370)
..++|+.|++++|.+. .+|..++.+++|++|++++|.+..+ ..++.+++|++|+++ +|.... +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECC-CCcccchHHHHhhhCCCCCE
Confidence 3578999999999998 8898889999999999999988777 678899999999999 776444 7776777999999
Q ss_pred eccccCC-CCCc--cccCCCCCccEEEEecccccchhcHH---HhhhccCCCCEEEEe
Q 044637 164 ISALHPG-SCTP--DILGRLPNVQTLRISGDLSYYHSGVS---KSLCQLHKLECLKLV 215 (370)
Q Consensus 164 L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 215 (370)
|++.++. ...+ ..+..+++|+.|++++|. .....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 9988888 5543 778899999999999995 333322 478889999988764
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.8e-12 Score=129.17 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=101.0
Q ss_pred HHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhccccCc
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLM 138 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 138 (370)
++.+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++.|++|++|+|++|.+..+|..++.|++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 55678899999999999999999988889999999999999999999999999999999999998889999999999999
Q ss_pred EEEccCCcCCCCCCCCCCCCCCCceeccccCC
Q 044637 139 HLNFGSITLPAPPKNNSSTLKNLIFISALHPG 170 (370)
Q Consensus 139 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (370)
+|+++ +|....+|..++++++|++|++.++.
T Consensus 297 ~L~L~-~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECC-SSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEECC-CCCCCccChhhhcCCCccEEeCCCCc
Confidence 99999 87877899999999999999988877
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.4e-12 Score=105.31 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=102.0
Q ss_pred ccCCcCCCcEEeeCCCCCcccChhhhcCC-CCcEEecCCCcCccccHHHhccccCcEEEccCCcCCCCCCCCC-CCCCCC
Q 044637 84 GLENFFYLKYLKLNIPSLKCLPSLLCTLI-NLQTLEMPSSYIDHSPEDIWMMLKLMHLNFGSITLPAPPKNNS-STLKNL 161 (370)
Q Consensus 84 ~~~~l~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L 161 (370)
.+..+.+|+.|++++|.++.+|. +..+. +|++|++++|.+..+ ..++.+++|++|+++ +|....+|..+ ..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECC-CCcccccCcchhhcCCCC
Confidence 35678899999999999998875 55554 999999999988877 578899999999999 77766777665 889999
Q ss_pred ceeccccCC-CCCcc--ccCCCCCccEEEEecccccchhcHHH----hhhccCCCCEEEEec
Q 044637 162 IFISALHPG-SCTPD--ILGRLPNVQTLRISGDLSYYHSGVSK----SLCQLHKLECLKLVN 216 (370)
Q Consensus 162 ~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~~ 216 (370)
++|++.++. ..++. .+..+++|+.|++++|. ....+. .+..+++|+.|+++.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~---i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP---VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG---GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC---CCCcHhHHHHHHHHCCccceeCCCc
Confidence 999988887 66665 78889999999999984 334444 377777777777665
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=3.8e-11 Score=108.40 Aligned_cols=255 Identities=13% Similarity=0.034 Sum_probs=160.4
Q ss_pred CCeeeEEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCcccChhhhc--------CCCCcEEecCCCcCccccH-HHhc
Q 044637 65 FKHLRVLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLKCLPSLLCT--------LINLQTLEMPSSYIDHSPE-DIWM 133 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~ 133 (370)
+++|++|||++|.+. ..+. +.++.++++.+..+.+. +..+.. |++|+.|++.+ .+..++. .+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcc--ccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 788999999988876 2222 22333555555555222 124556 89999999988 6777764 4678
Q ss_pred cccCcEEEccCCcCCCCCC-CCCCCCCCCceeccccCC------CCCccccCCCCCcc-EEEEecccccchhcHHHhh--
Q 044637 134 MLKLMHLNFGSITLPAPPK-NNSSTLKNLIFISALHPG------SCTPDILGRLPNVQ-TLRISGDLSYYHSGVSKSL-- 203 (370)
Q Consensus 134 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~l-- 203 (370)
+++|+.+++. ++....++ ..+..+.++..+...... .-....+..+.+|+ .+.+.... .++..+
T Consensus 123 ~~~L~~l~l~-~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~-----~l~~~~~~ 196 (329)
T 3sb4_A 123 CDNLKICQIR-KKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG-----KLEDEIMK 196 (329)
T ss_dssp CTTCCEEEBC-CSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC-----CHHHHHHH
T ss_pred CcccceEEcC-CCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC-----cHHHHHhh
Confidence 8999999998 65533333 456677777777633211 11122244556666 45554432 233322
Q ss_pred --hccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecC
Q 044637 204 --CQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGC 281 (370)
Q Consensus 204 --~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 281 (370)
....++..+.+.+.-.....+. ....+ ++|+.+++.+|.+.......+.++++|+.+++..+ +.. . ....+
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~---l~~~~-~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I-~~~aF 269 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKL---IRDYM-PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-I-GQRVF 269 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHH---HHHHC-TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-E-CTTTT
T ss_pred cccCccccceEEEeeeecHHHHHH---HHHhc-CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-e-hHHHh
Confidence 2345566666654000000000 00125 89999999998876666667889999999999865 322 2 22226
Q ss_pred CCCcccc-EEEecCCCCCceeE-eCCCCCCCcceEeecCCcccCCCc-hhcccCCCCcEEEe
Q 044637 282 SSFPQLK-ILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLP-EELWCIKSLCKLEL 340 (370)
Q Consensus 282 ~~~~~L~-~L~l~~~~~l~~i~-~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l 340 (370)
.++++|+ .+.+.+ .++.++ ..+..|++|+.+++.++. ++.++ ..+.++++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 7888999 999987 578886 467889999999998776 44554 47888999998864
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=5.3e-14 Score=117.61 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=108.6
Q ss_pred hhHHHhccCCeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHHHhcccc
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPEDIWMMLK 136 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 136 (370)
.++..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+| .++.+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 34557889999999999999999888 789999999999999999999988888999999999999888887 6899999
Q ss_pred CcEEEccCCcCCCCCCC--CCCCCCCCceeccccCC--CCCcc----------ccCCCCCccEEE
Q 044637 137 LMHLNFGSITLPAPPKN--NSSTLKNLIFISALHPG--SCTPD----------ILGRLPNVQTLR 187 (370)
Q Consensus 137 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~--~~~~~----------~l~~l~~L~~L~ 187 (370)
|++|+++ +|....++. .+..+++|++|++.++. ...+. .+..+++|+.|+
T Consensus 117 L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECC-CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999 776555443 67899999999987776 22222 267889999987
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=9.7e-11 Score=95.72 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=93.3
Q ss_pred eeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCC
Q 044637 68 LRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSI 145 (370)
Q Consensus 68 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 145 (370)
.+.++++++.++.+|..+ .++|++|++++|.+..+|. .++.+++|++|++++|.+..+|.. +..+++|++|+++ +
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-E 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-S
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-C
Confidence 467888888888777654 3688899999988887764 467888999999988888777754 5788889999998 6
Q ss_pred cCCCCCCC-CCCCCCCCceeccccCC-CCCccc-cCCCCCccEEEEeccc
Q 044637 146 TLPAPPKN-NSSTLKNLIFISALHPG-SCTPDI-LGRLPNVQTLRISGDL 192 (370)
Q Consensus 146 ~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 192 (370)
+....++. .+..+++|++|++.++. ..++.. +..+++|+.|++++|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66555554 46788888888877777 555544 4778889999998885
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5e-11 Score=98.95 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=91.8
Q ss_pred CeeeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEcc
Q 044637 66 KHLRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFG 143 (370)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 143 (370)
+++++|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5799999999999999999999999999999999999776 568999999999999998888775 58899999999999
Q ss_pred CCcCCCCCCC-CCCCCCCCceeccccCC
Q 044637 144 SITLPAPPKN-NSSTLKNLIFISALHPG 170 (370)
Q Consensus 144 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 170 (370)
++....+|. .+..+++|+.|++.++.
T Consensus 111 -~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 -GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 777667765 47889999999977665
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=2.9e-11 Score=100.31 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=92.7
Q ss_pred cEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccccHH--HhccccCcEEEccCCcC-CCCCCCCCCCCCCCceecccc
Q 044637 92 KYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHSPED--IWMMLKLMHLNFGSITL-PAPPKNNSSTLKNLIFISALH 168 (370)
Q Consensus 92 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~ 168 (370)
+++++++++++.+|..+.. +|++|++++|.+..++.. ++.+++|++|+++ ++. ....|..+.++++|++|++.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEECCC
Confidence 8899999999999976654 999999999988888753 8899999999999 666 444477889999999999888
Q ss_pred CC-CCC-ccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEec
Q 044637 169 PG-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN 216 (370)
Q Consensus 169 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 216 (370)
+. ... +..+..+++|+.|+++++. .....+..+..+++|+.|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCC
Confidence 77 333 4457889999999999985 4444455555554444444443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=1.2e-10 Score=94.99 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=77.1
Q ss_pred eEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCCc
Q 044637 69 RVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSIT 146 (370)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 146 (370)
++++++++.++.+|..+. ++|++|++++|.++.+ |..++.+++|++|++++|.+..+|.. +..+++|++|+++ ++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CC
Confidence 678899888888887664 7899999999998876 56788899999999999988888865 4788899999998 66
Q ss_pred CCCCCCCC-CCCCCCCceeccccCC
Q 044637 147 LPAPPKNN-SSTLKNLIFISALHPG 170 (370)
Q Consensus 147 ~~~~~~~~-l~~l~~L~~L~l~~~~ 170 (370)
....+|.. +..+++|++|++.++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 65556554 6666666666655544
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=1.4e-10 Score=94.10 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=75.5
Q ss_pred eeEEEcCCCCcccCCcccCCcCCCcEEeeCCCCCccc-ChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCC
Q 044637 68 LRVLNLGSAVLDQYPPGLENFFYLKYLKLNIPSLKCL-PSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSI 145 (370)
Q Consensus 68 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 145 (370)
.++++++++.++.+|..+. ++|++|++++|.++.+ |..++.+++|++|++++|.+..+|.. +..+++|++|+++ +
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-D 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-S
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-C
Confidence 5678999988888887663 7889999999998877 56688899999999999988888765 4788889999998 6
Q ss_pred cCCCCCCC-CCCCCCCCceeccccCC
Q 044637 146 TLPAPPKN-NSSTLKNLIFISALHPG 170 (370)
Q Consensus 146 ~~~~~~~~-~l~~l~~L~~L~l~~~~ 170 (370)
+....++. .+..+++|++|++.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 66555554 35556666666544443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2.6e-10 Score=93.14 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=89.4
Q ss_pred CCeeeEEEcCCCCcccCCc-ccCCcCCCcEEeeCCCCCcccChh-hhcCCCCcEEecCCCcCccccHH-HhccccCcEEE
Q 044637 65 FKHLRVLNLGSAVLDQYPP-GLENFFYLKYLKLNIPSLKCLPSL-LCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLN 141 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 141 (370)
.++|++|++++|.++.++. .+..+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4689999999999986654 568899999999999999988754 68999999999999988888765 57899999999
Q ss_pred ccCCcCCCCCCCC-CCCCCCCceeccccCC
Q 044637 142 FGSITLPAPPKNN-SSTLKNLIFISALHPG 170 (370)
Q Consensus 142 l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 170 (370)
++ ++....+|.. +..+++|++|++.++.
T Consensus 107 l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LD-TNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CC-SSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-CCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99 7776667665 5789999999977765
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=7.2e-09 Score=95.82 Aligned_cols=258 Identities=10% Similarity=0.099 Sum_probs=146.3
Q ss_pred CCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCcccc-HHHhccccCcEEE
Q 044637 65 FKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSP-EDIWMMLKLMHLN 141 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 141 (370)
+..++.+.+.+. ++.++ ..|..+ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .+..++ ..+..+++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 344555555433 22222 233343 5666666544 454432 3333 2566666654 333333 2345566666666
Q ss_pred ccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCc
Q 044637 142 FGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNM 220 (370)
Q Consensus 142 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 220 (370)
+. ++....++...-.+.+|+.+.+...- .--...+..+++|+.+.+..+ ....-..++.+ .+|+.+.+..
T Consensus 187 l~-~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp~---- 257 (401)
T 4fdw_A 187 LS-KTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLPN---- 257 (401)
T ss_dssp CT-TSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEET----
T ss_pred cC-CCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEeCC----
Confidence 66 54444444443345566666543221 112234556667777776653 11111223333 5677777754
Q ss_pred cccceEEE-ecCCCCCCceEEEEeccCCC-----CCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecC
Q 044637 221 RQLSRMIL-SEYKFPPSLTQLSLSNTELM-----EDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKS 294 (370)
Q Consensus 221 ~~L~~L~l-~~~~~p~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 294 (370)
+++.+.- .+..+ ++|+.+.+.++... ......+.+|++|+.+.+. +.+.. . ....+.++++|+.+.|..
T Consensus 258 -~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I-~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 258 -GVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-L-GQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp -TCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-E-CTTTTTTCCSCCEEEECT
T ss_pred -CccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-E-hhhhhcCCCCccEEEECc
Confidence 2222211 55677 88899988877543 1234457889999999998 33322 1 111267788999999965
Q ss_pred CCCCceeEe-CCCCCCCcceEeecCCcccCCCchhcccC-CCCcEEEecCCC
Q 044637 295 MLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCI-KSLCKLELHWPQ 344 (370)
Q Consensus 295 ~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~~~ 344 (370)
.++.+.. .+..+ +|+.+.+.++......+..+..+ .+++.|.+....
T Consensus 333 --~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 333 --NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp --TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred --cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 4777764 46677 99999999986443334455556 478899987764
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=2e-08 Score=92.83 Aligned_cols=244 Identities=10% Similarity=0.064 Sum_probs=162.0
Q ss_pred HHhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHHHhccccC
Q 044637 60 NFCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPEDIWMMLKL 137 (370)
Q Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 137 (370)
..|..+ +|+.+.+.++ ++.++ ..|..+ +|+.+.+.. .++.++ ..+..|.+|+.+++..+.+..++.......+|
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 345665 6999999876 55333 345554 799999986 577664 56889999999999999888888776667899
Q ss_pred cEEEccCCcCCCCC-CCCCCCCCCCceeccccCCCCCc-cccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEe
Q 044637 138 MHLNFGSITLPAPP-KNNSSTLKNLIFISALHPGSCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 215 (370)
Q Consensus 138 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 215 (370)
+.+.+. ++. ..+ ...+.+|++|+.+.+...-..+. ..+.. .+|+.+.+... ....-..++..|++|+.+.+.
T Consensus 206 ~~l~lp-~~l-~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 206 EEVLLP-VTL-KEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp SEEECC-TTC-CEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEE
T ss_pred CEEEeC-Cch-heehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeC
Confidence 999998 653 333 34678899999998654332222 22333 68999999654 333334578899999999987
Q ss_pred cCCCc-cccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEec
Q 044637 216 NEGNM-RQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLK 293 (370)
Q Consensus 216 ~~~~~-~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 293 (370)
..... -.+..+.- .+..| ++|+.+.+.+ .+.......+.++++|+.+.+..+ +.. .-... +.++ +|+.+.+.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c-~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~-I~~~a-F~~~-~L~~l~l~ 353 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGC-PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ-INFSA-FNNT-GIKEVKVE 353 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTC-TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE-ECTTS-SSSS-CCCEEEEC
T ss_pred CccccCCcccEECHHHhhCC-ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE-EcHHh-CCCC-CCCEEEEc
Confidence 61100 00111111 56678 8999999974 344444556788999999999643 322 11122 6677 89999999
Q ss_pred CCCCCceeEe-CCCCCC-CcceEeecCCc
Q 044637 294 SMLWLEEWTM-GAGAMP-KLESLILNPCA 320 (370)
Q Consensus 294 ~~~~l~~i~~-~~~~l~-~L~~L~l~~c~ 320 (370)
++ .+..++. .+..++ +++.|.+....
T Consensus 354 ~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 354 GT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CC-CCcccccccccCCCCCccEEEeCHHH
Confidence 84 4555442 344554 67788776643
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=3.2e-09 Score=86.37 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=84.4
Q ss_pred CcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccCCcCCCCCCCC-CCCCCCCceecccc
Q 044637 91 LKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGSITLPAPPKNN-SSTLKNLIFISALH 168 (370)
Q Consensus 91 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~ 168 (370)
-+.++++++.+..+|..+. ++|++|++++|.+..+ |..++.+++|++|+++ ++....+|.. +.++++|++|++.+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEEECCC
Confidence 4789999999999998765 8999999999988877 4568899999999999 7777777765 58899999999888
Q ss_pred CC-CCCccc-cCCCCCccEEEEeccc
Q 044637 169 PG-SCTPDI-LGRLPNVQTLRISGDL 192 (370)
Q Consensus 169 ~~-~~~~~~-l~~l~~L~~L~l~~~~ 192 (370)
+. ..++.. +..+++|+.|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 77 666654 8889999999999985
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=4.4e-09 Score=85.21 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=84.6
Q ss_pred CCcEEeeCCCCCcccChhhhcCCCCcEEecCCCcCccc-cHHHhccccCcEEEccCCcCCCCCCCC-CCCCCCCceeccc
Q 044637 90 YLKYLKLNIPSLKCLPSLLCTLINLQTLEMPSSYIDHS-PEDIWMMLKLMHLNFGSITLPAPPKNN-SSTLKNLIFISAL 167 (370)
Q Consensus 90 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~ 167 (370)
..+.++++++.++.+|..+. ++|++|++++|.+..+ |..+..+++|++|+++ ++....++.. +..+++|++|++.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECC
Confidence 46899999999999997664 8999999999988887 4568899999999999 7776666654 5899999999988
Q ss_pred cCC-CCCcc-ccCCCCCccEEEEeccc
Q 044637 168 HPG-SCTPD-ILGRLPNVQTLRISGDL 192 (370)
Q Consensus 168 ~~~-~~~~~-~l~~l~~L~~L~l~~~~ 192 (370)
++. ..++. .+..+++|+.|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 887 55554 48889999999999985
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.4e-08 Score=91.46 Aligned_cols=214 Identities=12% Similarity=-0.016 Sum_probs=134.0
Q ss_pred cCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCCcC----CCCC-CCCCCCCCC
Q 044637 88 FFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSITL----PAPP-KNNSSTLKN 160 (370)
Q Consensus 88 l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~----~~~~-~~~l~~l~~ 160 (370)
|++|+.+++.. .++.++. .|..|++|+.+++.++.+..++.. +..+.++..+... ... ...+ ...+.++.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~-~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG-SSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT-CTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc-chhhhhccccccccccccccc
Confidence 78888888888 7777754 577888888888888866665533 4445555655554 211 1111 122445556
Q ss_pred Cc-eeccccCCCCCcc----ccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecCCCccccceEEE-ecCCCC
Q 044637 161 LI-FISALHPGSCTPD----ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMIL-SEYKFP 234 (370)
Q Consensus 161 L~-~L~l~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~~p 234 (370)
|+ .+.+.... .++. .-....+++.+.+.+.- ...........+++|+.+++.... ++.+.- .+..+
T Consensus 178 L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~----i~~I~~~aF~~~- 249 (329)
T 3sb4_A 178 LETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN----ATTIPDFTFAQK- 249 (329)
T ss_dssp CEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC----CCEECTTTTTTC-
T ss_pred cceeEEecCCC-cHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC----cceecHhhhhCC-
Confidence 66 33321111 1111 11245677788877763 223333333348899999987611 222221 46678
Q ss_pred CCceEEEEeccCCCCCCcccccCCCCCC-eEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcc
Q 044637 235 PSLTQLSLSNTELMEDPMPTLEELPHLE-VLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLE 312 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~ 312 (370)
.+|+.+++.++ +.......+.++++|+ .+.+.. .+.. ..... +.++++|+.+.+.+ +.++.++. .+..+++|+
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCccCCEEEeCC-CccCccchhhhcCCcchh
Confidence 89999999887 5555556688999999 999985 4432 11222 77889999999987 56888875 678899999
Q ss_pred eEee
Q 044637 313 SLIL 316 (370)
Q Consensus 313 ~L~l 316 (370)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 8864
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=1.4e-08 Score=92.22 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=41.6
Q ss_pred hccCCeeeEEEcCC-CCcccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCccccHHHhccccCc
Q 044637 62 CKKFKHLRVLNLGS-AVLDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSPEDIWMMLKLM 138 (370)
Q Consensus 62 ~~~~~~L~~L~L~~-~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 138 (370)
+..+++|++|+|++ |.++.+| ..|..+++|++|+|++|.++.++ ..+++|++|++|+|++|.+..+|..+.....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 44555555555553 5555333 34555555555555555555432 244555555555555555555554433333355
Q ss_pred EEEcc
Q 044637 139 HLNFG 143 (370)
Q Consensus 139 ~L~l~ 143 (370)
.|++.
T Consensus 107 ~l~l~ 111 (347)
T 2ifg_A 107 ELVLS 111 (347)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 55555
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=3.5e-10 Score=103.64 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCeeeEEEcCCCCcc-c----CCcccC-CcCCCcEEeeCCCCCcc--cChhhhcCCCCcEEecCCCcCcccc-----HHH
Q 044637 65 FKHLRVLNLGSAVLD-Q----YPPGLE-NFFYLKYLKLNIPSLKC--LPSLLCTLINLQTLEMPSSYIDHSP-----EDI 131 (370)
Q Consensus 65 ~~~L~~L~L~~~~~~-~----~~~~~~-~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~lp-----~~i 131 (370)
++.|+.|++++|.++ . +...+. ..++|++|++++|.+.. +......+.+|++|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999876 2 222233 23689999999998872 2223345678899999998664322 122
Q ss_pred -hccccCcEEEccCCcCCCC-----CCCCCCCCCCCceeccccCC------CCCccccCCCCCccEEEEecc
Q 044637 132 -WMMLKLMHLNFGSITLPAP-----PKNNSSTLKNLIFISALHPG------SCTPDILGRLPNVQTLRISGD 191 (370)
Q Consensus 132 -~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~ 191 (370)
...++|++|+++ +|.... ++..+..+++|++|++.++. ..+...+...++|+.|++++|
T Consensus 151 ~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLS-NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECC-SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCC-CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 135778888888 654211 22223445555555555444 112333444445555555555
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=4.2e-07 Score=83.88 Aligned_cols=267 Identities=12% Similarity=0.049 Sum_probs=144.5
Q ss_pred HHHhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCC--c-----------
Q 044637 59 ENFCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSS--Y----------- 123 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~--~----------- 123 (370)
...|..|++|+.+.+..+ ++.+. ..|..|.+|+.+++..+ ++.++ ..+..+.+|+.+.+..+ .
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 345788888888888754 55333 35777888888888653 44443 24555666655544322 0
Q ss_pred --------Ccccc-HHHhccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccc
Q 044637 124 --------IDHSP-EDIWMMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLS 193 (370)
Q Consensus 124 --------~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 193 (370)
...+. ..+..+.+|+.+.+. +....--...+.++.+|+.+.+...- .-....+..+..|+.+.+....
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~-~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~- 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLP-DSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSL- 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTC-
T ss_pred cccccCccccccchhhhcccCCCcEEecC-CccceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCc-
Confidence 01111 234567788888887 44321112345667777777643322 1112234445555555443321
Q ss_pred cchhcHHHhhhccCCCCEEEEecC-----CCcc----ccceEEE----------ecCCCCCCceEEEEeccCCCCCCccc
Q 044637 194 YYHSGVSKSLCQLHKLECLKLVNE-----GNMR----QLSRMIL----------SEYKFPPSLTQLSLSNTELMEDPMPT 254 (370)
Q Consensus 194 ~~~~~~~~~l~~l~~L~~L~l~~~-----~~~~----~L~~L~l----------~~~~~p~~L~~L~l~~~~~~~~~~~~ 254 (370)
..+.........|+.+.+... ...+ .++.+.+ .+..+ ..++.+......+. ...
T Consensus 220 ---~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~-~~l~~~~~~~~~i~---~~~ 292 (394)
T 4fs7_A 220 ---YYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNC-SGLKKVIYGSVIVP---EKT 292 (394)
T ss_dssp ---CEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTC-TTCCEEEECSSEEC---TTT
T ss_pred ---eEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccc-cccceeccCceeec---ccc
Confidence 011111222334444444320 0000 1222221 23344 55555555443221 123
Q ss_pred ccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCCc-hhcccC
Q 044637 255 LEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLP-EELWCI 332 (370)
Q Consensus 255 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l 332 (370)
+..+.+|+.+.+..+ +.. . ....+.++.+|+.+.|.. .++.+.. ++..|.+|+.+.+..+ ++.++ ..+..|
T Consensus 293 F~~~~~L~~i~l~~~-i~~-I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C 365 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKF-I-GEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGC 365 (394)
T ss_dssp TTTCTTCCEEEECTT-CCE-E-CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTC
T ss_pred ccccccccccccccc-cce-e-chhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCC
Confidence 567888998888643 221 1 111266778899999874 4777753 5678899999999765 55554 467889
Q ss_pred CCCcEEEecCC
Q 044637 333 KSLCKLELHWP 343 (370)
Q Consensus 333 ~~L~~L~l~~~ 343 (370)
++|+.+++...
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 99999998654
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=9.3e-07 Score=81.56 Aligned_cols=244 Identities=11% Similarity=0.089 Sum_probs=128.8
Q ss_pred cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCcccc-HHHhccccCcEEEccCCcCCCCCC--------
Q 044637 83 PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSP-EDIWMMLKLMHLNFGSITLPAPPK-------- 152 (370)
Q Consensus 83 ~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~-------- 152 (370)
..|..|.+|+.+.+.. .++.++ ..+.+|.+|+.+++..+ +..++ ..+..+.+|+.+.+. .....--.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p-~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP-LMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC-TTCCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc-Cceeeecceeeecccc
Confidence 3578899999999974 477775 45889999999999765 44443 235566777766655 32110001
Q ss_pred --------------CCCCCCCCCceeccccCCC-CCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEEEEecC
Q 044637 153 --------------NNSSTLKNLIFISALHPGS-CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 217 (370)
Q Consensus 153 --------------~~l~~l~~L~~L~l~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 217 (370)
..+.+|++|+.+.+..... -....+..+++|+.+.+..+ ....-..++.++..|+.+.+...
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~---~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN---LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT---CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC---ceEeCchhhccccccceeecCCC
Confidence 1233444444444322111 11122334444554444332 11111123444445554444330
Q ss_pred -----CCcc---ccceEEE----------ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEe
Q 044637 218 -----GNMR---QLSRMIL----------SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCV 279 (370)
Q Consensus 218 -----~~~~---~L~~L~l----------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 279 (370)
+..+ +++.+.+ .+..+ ..++.+.+..+. .......+..++.++........+...
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~-~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~----- 291 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGC-TDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEK----- 291 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTC-SSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTT-----
T ss_pred ceEeehhhcccCCCceEEECCCceeccccccccc-ccceeEEcCCCc-ceeeccccccccccceeccCceeeccc-----
Confidence 0000 3333333 12233 444555544332 111222334455555555543322111
Q ss_pred cCCCCccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCCc-hhcccCCCCcEEEecCC
Q 044637 280 GCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLP-EELWCIKSLCKLELHWP 343 (370)
Q Consensus 280 ~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~ 343 (370)
.+..+.+|+.+.+.. .++.+.. ++..+.+|+.+.+... ++.++ ..+.+|.+|+.+.+...
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc
Confidence 155677888888875 4777764 4678899999999654 55554 46778999999988643
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=5.5e-08 Score=88.15 Aligned_cols=100 Identities=17% Similarity=0.053 Sum_probs=84.2
Q ss_pred eEEEcCCC-CcccCCcccCCcCCCcEEeeCC-CCCcccC-hhhhcCCCCcEEecCCCcCccccH-HHhccccCcEEEccC
Q 044637 69 RVLNLGSA-VLDQYPPGLENFFYLKYLKLNI-PSLKCLP-SLLCTLINLQTLEMPSSYIDHSPE-DIWMMLKLMHLNFGS 144 (370)
Q Consensus 69 ~~L~L~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~ 144 (370)
..++.+++ .++.+|. +..+.+|++|+|++ |.+..+| ..++.|++|++|+|++|.+..+++ .+..+++|++|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~- 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS- 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-
Confidence 35688888 7999999 99999999999996 9999887 579999999999999998887765 57899999999999
Q ss_pred CcCCCCCCCCCCCCCCCceeccccCC
Q 044637 145 ITLPAPPKNNSSTLKNLIFISALHPG 170 (370)
Q Consensus 145 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 170 (370)
+|....+|..+.....|+.|++.++.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 77777777655444449999977666
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=7.2e-09 Score=94.86 Aligned_cols=140 Identities=19% Similarity=0.120 Sum_probs=100.1
Q ss_pred cCCeeeEEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCccc-----Chhh-hcCCCCcEEecCCCcCcc-----ccHH
Q 044637 64 KFKHLRVLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLKCL-----PSLL-CTLINLQTLEMPSSYIDH-----SPED 130 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~l-----p~~~-~~l~~L~~L~l~~~~~~~-----lp~~ 130 (370)
..+.|++|+|++|.++ ........+++|++|++++|.+... ...+ ...++|++|++++|.+.. ++..
T Consensus 99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 3479999999999987 2223233567899999999998732 2222 246889999999997643 5556
Q ss_pred HhccccCcEEEccCCcCCC-----CCCCCCCCCCCCceeccccCC-C-----CCccccCCCCCccEEEEecccccchhcH
Q 044637 131 IWMMLKLMHLNFGSITLPA-----PPKNNSSTLKNLIFISALHPG-S-----CTPDILGRLPNVQTLRISGDLSYYHSGV 199 (370)
Q Consensus 131 i~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 199 (370)
+..+++|++|+++ +|... .+...+..+++|++|++.+|. . .++..+...++|+.|++++|. ....-
T Consensus 179 L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~--i~~~g 255 (372)
T 3un9_A 179 LAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE--LSSEG 255 (372)
T ss_dssp HHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS--CCHHH
T ss_pred HhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC--CCHHH
Confidence 6789999999999 66522 223456677899999988887 2 344556667889999999986 54444
Q ss_pred HHhhhcc
Q 044637 200 SKSLCQL 206 (370)
Q Consensus 200 ~~~l~~l 206 (370)
...+..+
T Consensus 256 ~~~L~~~ 262 (372)
T 3un9_A 256 RQVLRDL 262 (372)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4455444
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.53 E-value=4.1e-06 Score=77.22 Aligned_cols=270 Identities=11% Similarity=0.091 Sum_probs=158.8
Q ss_pred HHhccCC-eeeEEEcCCCCcccC-CcccCCcCCCcEEeeCCCC---CcccC-hhhhcCCCCcEEecCCCcCcccc-HHHh
Q 044637 60 NFCKKFK-HLRVLNLGSAVLDQY-PPGLENFFYLKYLKLNIPS---LKCLP-SLLCTLINLQTLEMPSSYIDHSP-EDIW 132 (370)
Q Consensus 60 ~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~---~~~lp-~~~~~l~~L~~L~l~~~~~~~lp-~~i~ 132 (370)
..|..++ .|+.+.+..+ ++.+ ...|..|.+|+.+.+..+. ++.+. ..+..+.+|+.+.+..+ +..++ ..+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4466664 5888888765 4422 3457788899998887643 55554 35667788887776554 33333 2355
Q ss_pred ccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEecccccchhcHHHhhhccCCCCEE
Q 044637 133 MMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECL 212 (370)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 212 (370)
.+.+|+.+.+. .....--...+..+.+|+.+.+...-..+........+|+.+.+.... ...-..++..+..+...
T Consensus 135 ~c~~L~~i~lp-~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~---~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIP-EGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKV---TRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTC---CEECTTTTTTCTTCCEE
T ss_pred hhccccccccc-ceeeeecccceecccccccccccceeeEeccccccccceeEEEECCcc---cccccchhhhcccccee
Confidence 67788888887 433211223456677777776433222222222234567777765542 22222344455555555
Q ss_pred EEecC-----CCcc------------------ccceEEE----------ecCCCCCCceEEEEeccCCCCCCcccccCCC
Q 044637 213 KLVNE-----GNMR------------------QLSRMIL----------SEYKFPPSLTQLSLSNTELMEDPMPTLEELP 259 (370)
Q Consensus 213 ~l~~~-----~~~~------------------~L~~L~l----------~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~ 259 (370)
..... +..+ .+..+.+ .+..+ ..|+.+.+.... .......+.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c-~~L~~i~lp~~~-~~I~~~aF~~c~ 288 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSC-AYLASVKMPDSV-VSIGTGAFMNCP 288 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTC-SSCCEEECCTTC-CEECTTTTTTCT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeec-ccccEEeccccc-ceecCccccccc
Confidence 44330 0000 1111111 34456 677777775432 122233456788
Q ss_pred CCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCCc-hhcccCCCCcE
Q 044637 260 HLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLP-EELWCIKSLCK 337 (370)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~ 337 (370)
+|+.+.+. +.+.. +....+.++.+|+.+.|.. .++.+.. ++..|.+|+.+.|... ++.++ ..+.+|++|+.
T Consensus 289 ~L~~i~l~-~~i~~--I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 289 ALQDIEFS-SRITE--LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCCEEECC-TTCCE--ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred ccccccCC-Ccccc--cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 89888886 22221 1111266778999999975 4777764 5678999999999754 56665 46788999999
Q ss_pred EEecCCC
Q 044637 338 LELHWPQ 344 (370)
Q Consensus 338 L~l~~~~ 344 (370)
+++.+..
T Consensus 362 i~~~~~~ 368 (394)
T 4gt6_A 362 IEYSGSR 368 (394)
T ss_dssp EEESSCH
T ss_pred EEECCce
Confidence 9999886
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=1.3e-08 Score=92.59 Aligned_cols=138 Identities=21% Similarity=0.251 Sum_probs=76.4
Q ss_pred HHHhhhccCCCCEEEEecCCCccccceEEEecCCCCCCceEEEEeccCCCCCCccccc--CCCCCCeEEeecc--cccCc
Q 044637 199 VSKSLCQLHKLECLKLVNEGNMRQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLE--ELPHLEVLKLKQN--SYLER 274 (370)
Q Consensus 199 ~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~p~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~ 274 (370)
+...+..+++|++|.+.+... +.+. . ... ++|++|++..|.+.......++ .+|+|+.|+|+.+ ...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~-l~l~----~-~~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN-LSIG----K-KPR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT-CBCC----S-CBC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCC-ceec----c-ccC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 445556667777777765210 0011 1 124 6778888877766544444443 6788888877531 21111
Q ss_pred e-e-----EEecCCCCccccEEEecCCCCCceeE---eCCCCCCCcceEeecCCcccC----CCchhcccCCCCcEEEec
Q 044637 275 K-L-----VCVGCSSFPQLKILHLKSMLWLEEWT---MGAGAMPKLESLILNPCAYLR----KLPEELWCIKSLCKLELH 341 (370)
Q Consensus 275 ~-~-----~~~~~~~~~~L~~L~l~~~~~l~~i~---~~~~~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~ 341 (370)
. . ... ...||+|+.|.+.+|......+ .....+|+|+.|++++|.... .++.++..+++|+.|++.
T Consensus 237 ~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 237 GDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 0 0 111 2357788888887754322111 112457788888887776333 244455667788888887
Q ss_pred CCC
Q 044637 342 WPQ 344 (370)
Q Consensus 342 ~~~ 344 (370)
+|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 765
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=9.2e-08 Score=86.95 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=50.6
Q ss_pred CCCCCCeEEeecccccCce--eEEecCCCCccccEEEecCCCCCce-----eEeCCCCCCCcceEeecCCcccCCCchhc
Q 044637 257 ELPHLEVLKLKQNSYLERK--LVCVGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLRKLPEEL 329 (370)
Q Consensus 257 ~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 329 (370)
.+|+|++|++.+|.+.+.. .... ...+|+|++|+|+. +.+.. ++..+..+++|+.|++++|.... .++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d---~~~ 324 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD---EMK 324 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH---HHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCH---HHH
Confidence 4788888888777665321 1111 24578899999976 45653 34344568899999999886432 222
Q ss_pred ccCCC--CcEEEecCCC
Q 044637 330 WCIKS--LCKLELHWPQ 344 (370)
Q Consensus 330 ~~l~~--L~~L~l~~~~ 344 (370)
..+.. ..++++++..
T Consensus 325 ~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHCCSEEECCSBC
T ss_pred HHHHHHcCCEEEecCCc
Confidence 22222 2457777654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=6.9e-08 Score=77.64 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCceEEEEeccCCCCCCcccccCCCCCCeEEeeccc-ccCceeEEecCCC----CccccEEEecCCCCCcee-EeCCCCC
Q 044637 235 PSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNS-YLERKLVCVGCSS----FPQLKILHLKSMLWLEEW-TMGAGAM 308 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~i-~~~~~~l 308 (370)
..|+.|++++|.+++.....+..+++|+.|+|++|. +++..+.. +.. .++|++|+|++|..+++- ...+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 457888888888777777777788888888888775 44433222 222 246888888888777621 1224567
Q ss_pred CCcceEeecCCcccCC
Q 044637 309 PKLESLILNPCAYLRK 324 (370)
Q Consensus 309 ~~L~~L~l~~c~~l~~ 324 (370)
++|+.|++++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 7888888888876653
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.8e-07 Score=75.55 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=80.4
Q ss_pred hhHHHhccCCeeeEEEcCCC-Ccc-----cCCcccCCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcCc
Q 044637 57 QCENFCKKFKHLRVLNLGSA-VLD-----QYPPGLENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYID 125 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~ 125 (370)
.+...+...+.|++|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45667788899999999999 776 34556677789999999999887 24556667788999999998665
Q ss_pred c-----ccHHHhccccCcEEEc--cCCcCCCCCCCCCCCCCCCceeccccCCCCCccccCCCCCccEEEEeccc
Q 044637 126 H-----SPEDIWMMLKLMHLNF--GSITLPAPPKNNSSTLKNLIFISALHPGSCTPDILGRLPNVQTLRISGDL 192 (370)
Q Consensus 126 ~-----lp~~i~~l~~L~~L~l--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 192 (370)
. +...+...++|++|++ + ++..+.- +. ..+...+...++|+.|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~-~N~i~~~--g~---------------~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQ-SQPLGNN--VE---------------MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCC-SSCCCHH--HH---------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCC-CCCCCHH--HH---------------HHHHHHHHhCCCcCEEeccCCC
Confidence 3 4445566677888888 4 3321100 00 1123344556678888888774
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=7.3e-07 Score=71.65 Aligned_cols=84 Identities=8% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE-eCCCC----CCCcceEeecCCcccCC-CchhcccC
Q 044637 259 PHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT-MGAGA----MPKLESLILNPCAYLRK-LPEELWCI 332 (370)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~----l~~L~~L~l~~c~~l~~-l~~~~~~l 332 (370)
..|+.|++++|.+++..+.. +..+++|++|+|++|..++... ..+.. +++|+.|++++|..++. --..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 46999999999987765433 5689999999999999887432 11233 46899999999987663 12346679
Q ss_pred CCCcEEEecCCC
Q 044637 333 KSLCKLELHWPQ 344 (370)
Q Consensus 333 ~~L~~L~l~~~~ 344 (370)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999998
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00014 Score=66.34 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeEe-CCCCCCCcce
Q 044637 235 PSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLES 313 (370)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~ 313 (370)
..|+.+.+..+ +.......+.++.+|+.+.+..+ +.. . ....+.++++|+.+.+.+ ..++.++. .+..|.+|+.
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~-i-~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT-V-PYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE-E-CTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCE
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-cee-c-cccccccccccccccccc-cccceehhhhhcCCCCCCE
Confidence 55555555433 12222223445556666665421 111 0 111144556666666654 23555542 3455666666
Q ss_pred EeecCCcccCCCc-hhcccCCCCcEEEec
Q 044637 314 LILNPCAYLRKLP-EELWCIKSLCKLELH 341 (370)
Q Consensus 314 L~l~~c~~l~~l~-~~~~~l~~L~~L~l~ 341 (370)
+.+... ++.++ ..+.+|++|+.+.+.
T Consensus 315 i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 315 VTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 666432 33333 244556666666553
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=5.8e-06 Score=71.38 Aligned_cols=59 Identities=24% Similarity=0.170 Sum_probs=29.2
Q ss_pred cCCeeeEEEcCCCCccc---CCcccCCcCCCcEEeeCCCCCcccChhhhcCC--CCcEEecCCCc
Q 044637 64 KFKHLRVLNLGSAVLDQ---YPPGLENFFYLKYLKLNIPSLKCLPSLLCTLI--NLQTLEMPSSY 123 (370)
Q Consensus 64 ~~~~L~~L~L~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~ 123 (370)
++++|++|+|++|.++. +|..+..+++|++|+|++|.+..+. .+..+. +|++|++++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 45555555555555542 2233345555555555555555431 233333 55555555553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=6.7e-05 Score=69.02 Aligned_cols=266 Identities=10% Similarity=0.048 Sum_probs=139.4
Q ss_pred HHHhccCCeeeEEEcCCCC---cccCC-cccCCcCCCcEEeeCCCCCcccC-hhhhcCCCCcEEecCCCcCcccc-HHHh
Q 044637 59 ENFCKKFKHLRVLNLGSAV---LDQYP-PGLENFFYLKYLKLNIPSLKCLP-SLLCTLINLQTLEMPSSYIDHSP-EDIW 132 (370)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~---~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~lp-~~i~ 132 (370)
+..|..|++|+.+.+..+. ++.+. ..|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+... +..++ ..+.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~ 157 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFS 157 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccccee
Confidence 4468899999999987653 44332 34666777777766543 44443 34566777777777544 22222 2344
Q ss_pred ccccCcEEEccCCcCCCCCCCCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEeccc-------------------
Q 044637 133 MMLKLMHLNFGSITLPAPPKNNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDL------------------- 192 (370)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~------------------- 192 (370)
.+.+|+.+.+. +.. ..+....-...+|+.+.+.... ......+..+.++.........
T Consensus 158 ~c~~L~~i~~~-~~~-~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 4gt6_A 158 YCYSLHTVTLP-DSV-TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL 235 (394)
T ss_dssp TCTTCCEEECC-TTC-CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred ccccccccccc-cee-eEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccc
Confidence 55666666665 332 1121111122344444422211 1111122233333332221110
Q ss_pred ---------------ccchhcHHHhhhccCCCCEEEEecCCCccccceEEE-ecCCCCCCceEEEEeccCCCCCCccccc
Q 044637 193 ---------------SYYHSGVSKSLCQLHKLECLKLVNEGNMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLE 256 (370)
Q Consensus 193 ---------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~ 256 (370)
......-..++..+..|+.+.+.. ++..+.- .+..+ ..|+.+.+... +.......+.
T Consensus 236 ~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c-~~L~~i~l~~~-i~~I~~~aF~ 308 (394)
T 4gt6_A 236 IRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNC-PALQDIEFSSR-ITELPESVFA 308 (394)
T ss_dssp EECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTT
T ss_pred cccccccccceEEcCCcceEcccceeeecccccEEeccc-----ccceecCcccccc-cccccccCCCc-ccccCceeec
Confidence 001111123455667777776654 1111100 45567 88888888533 3333344578
Q ss_pred CCCCCCeEEeecccccCceeEEecCCCCccccEEEecCCCCCceeE-eCCCCCCCcceEeecCCcccCCCchhcccCCCC
Q 044637 257 ELPHLEVLKLKQNSYLERKLVCVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSL 335 (370)
Q Consensus 257 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 335 (370)
++.+|+.+.+..+ +.. .-... +.++.+|+.+.|.. .++.+. .++..|++|+.+.+.++... ...+..+.+|
T Consensus 309 ~c~~L~~i~lp~~-v~~-I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L 380 (394)
T 4gt6_A 309 GCISLKSIDIPEG-ITQ-ILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGL 380 (394)
T ss_dssp TCTTCCEEECCTT-CCE-ECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC
T ss_pred CCCCcCEEEeCCc-ccE-ehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCC
Confidence 8999999999743 221 11112 67788999999964 466665 35778999999999886522 1345567888
Q ss_pred cEEEecCC
Q 044637 336 CKLELHWP 343 (370)
Q Consensus 336 ~~L~l~~~ 343 (370)
+.+.+...
T Consensus 381 ~~i~i~~~ 388 (394)
T 4gt6_A 381 QNLPVAPG 388 (394)
T ss_dssp --------
T ss_pred CEEEeCCC
Confidence 88877654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=1.2e-05 Score=65.70 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=71.2
Q ss_pred hhhHHHhccCCeeeEEEcCCCCcc-----cCCcccCCcCCCcEEeeCCCCCcc-----cChhhhcCCCCcEEec--CCCc
Q 044637 56 IQCENFCKKFKHLRVLNLGSAVLD-----QYPPGLENFFYLKYLKLNIPSLKC-----LPSLLCTLINLQTLEM--PSSY 123 (370)
Q Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~ 123 (370)
..+...+...+.|++|+|++|.+. .+...+...+.|++|++++|.+.. +...+...++|++|++ ++|.
T Consensus 55 ~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 55 KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 345566778899999999999987 344556667899999999999883 5667788899999999 7786
Q ss_pred Ccc-----ccHHHhccccCcEEEccCCcC
Q 044637 124 IDH-----SPEDIWMMLKLMHLNFGSITL 147 (370)
Q Consensus 124 ~~~-----lp~~i~~l~~L~~L~l~~~~~ 147 (370)
+.. +...+...++|++|+++ +|.
T Consensus 135 i~~~g~~~l~~~L~~n~~L~~L~L~-~n~ 162 (185)
T 1io0_A 135 LGNNVEMEIANMLEKNTTLLKFGYH-FTQ 162 (185)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECC-CSS
T ss_pred CCHHHHHHHHHHHHhCCCcCEEecc-CCC
Confidence 643 44556677899999999 553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=3.8e-05 Score=66.31 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=45.5
Q ss_pred CcCCCcEEeeCCCCCccc---ChhhhcCCCCcEEecCCCcCccccHHHhccc--cCcEEEccCCcC-CCCCCC-------
Q 044637 87 NFFYLKYLKLNIPSLKCL---PSLLCTLINLQTLEMPSSYIDHSPEDIWMML--KLMHLNFGSITL-PAPPKN------- 153 (370)
Q Consensus 87 ~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~--~L~~L~l~~~~~-~~~~~~------- 153 (370)
.+++|+.|+|++|.++.+ |..++.+++|+.|+|++|.+..+ ..+..+. +|++|++. +|. ...+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~-~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLD-GNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECT-TSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEcc-CCcCccccCcchhHHHH
Confidence 456777777777776643 35556777777777777766554 2344444 77777777 444 223331
Q ss_pred CCCCCCCCceec
Q 044637 154 NSSTLKNLIFIS 165 (370)
Q Consensus 154 ~l~~l~~L~~L~ 165 (370)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 134456666665
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.0071 Score=54.95 Aligned_cols=262 Identities=9% Similarity=0.078 Sum_probs=136.7
Q ss_pred HhccCCeeeEEEcCCCCcccCC-cccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCcCccccHHHhccccCc
Q 044637 61 FCKKFKHLRVLNLGSAVLDQYP-PGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSYIDHSPEDIWMMLKLM 138 (370)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 138 (370)
++....+|+.+.+... ++.++ ..|..|.+|+.+.+..+ ++.++. .+.++ +|+.+.+..+ +..++.......+|+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 4455667777777643 44333 34677788888888643 555543 34554 5666666443 344443333345677
Q ss_pred EEEccCCcCCCCCC-CCCCCCCCCceeccccCC-CCCccccCCCCCccEEEEecccccc----------hhcHHHhhhcc
Q 044637 139 HLNFGSITLPAPPK-NNSSTLKNLIFISALHPG-SCTPDILGRLPNVQTLRISGDLSYY----------HSGVSKSLCQL 206 (370)
Q Consensus 139 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~----------~~~~~~~l~~l 206 (370)
.+.+. +.. ..+. ..+.++ +++...+...- .-....+..+.+++...+....... .......+..+
T Consensus 117 ~i~lp-~~~-~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFP-GAT-TEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECC-TTC-CEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCC-Ccc-ccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 77776 432 1111 122222 34433322111 1112234455666666554432000 00011112222
Q ss_pred CCCCEEEEecCCCccccceEEE-ecCCCCCCceEEEEeccCCCCCCcccccCCCCCCeEEeecccccCceeEEecCCCCc
Q 044637 207 HKLECLKLVNEGNMRQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEELPHLEVLKLKQNSYLERKLVCVGCSSFP 285 (370)
Q Consensus 207 ~~L~~L~l~~~~~~~~L~~L~l-~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 285 (370)
..+..+.+.. ..+...- .+..+ ..++.+.+... +.......+..+..|+.+.+..+ +.. .-... +..+.
T Consensus 194 ~~~~~~~~~~-----~~~~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~a-F~~~~ 263 (379)
T 4h09_A 194 KTGTEFTIPS-----TVKTVTAYGFSYG-KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-IGSFL-LQNCT 263 (379)
T ss_dssp CCCSEEECCT-----TCCEECTTTTTTC-SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-ECTTT-TTTCT
T ss_pred cccccccccc-----ceeEEeecccccc-cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-eCccc-cceee
Confidence 3333333322 0000000 23344 66777766543 22222334567888999988643 221 11112 56678
Q ss_pred cccEEEecCCCCCceeEe-CCCCCCCcceEeecCCcccCCCc-hhcccCCCCcEEEecC
Q 044637 286 QLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLP-EELWCIKSLCKLELHW 342 (370)
Q Consensus 286 ~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~ 342 (370)
+|+.+.+.. .++.++. .+..+++|+.+.+.++. ++.++ ..+.++.+|+.+.+..
T Consensus 264 ~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 264 ALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhccccccc--cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence 899999875 4777764 46789999999998764 44454 4677899999999854
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.01 Score=44.97 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=40.3
Q ss_pred eEEEcCCCCcc--cCCcccCCcCCCcEEeeCCCCCcccCh-hhhcCCCCcEEecCCCc
Q 044637 69 RVLNLGSAVLD--QYPPGLENFFYLKYLKLNIPSLKCLPS-LLCTLINLQTLEMPSSY 123 (370)
Q Consensus 69 ~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 123 (370)
.+++-++..++ .+|..+. .+|++|+|++|.++.+|. .+..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777777777 7776553 378888999888888865 46778888888888873
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.43 E-value=0.014 Score=47.60 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=59.7
Q ss_pred hHHHhccCCeeeEEEcCCC-Ccc-----cCCcccCCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCCcCcc
Q 044637 58 CENFCKKFKHLRVLNLGSA-VLD-----QYPPGLENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSSYIDH 126 (370)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~ 126 (370)
+......-+.|+.|+|+++ .+. .+...+..-..|+.|+|++|.+. .+.+.+..-+.|+.|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4455566788999999985 665 34455666778999999999887 345556666789999998886643
Q ss_pred -----ccHHHhccccCcEEEcc
Q 044637 127 -----SPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 127 -----lp~~i~~l~~L~~L~l~ 143 (370)
+-..+..-..|++|+++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHHHhhCCceeEEECC
Confidence 22333344567777776
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.58 E-value=0.044 Score=41.38 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=42.5
Q ss_pred cEEeeCCCCCc--ccChhhhcCCCCcEEecCCCcCccccHH-HhccccCcEEEccCCc
Q 044637 92 KYLKLNIPSLK--CLPSLLCTLINLQTLEMPSSYIDHSPED-IWMMLKLMHLNFGSIT 146 (370)
Q Consensus 92 ~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 146 (370)
.+++.++++++ .+|..+. .+|++|+|++|.+..+|.+ +..+++|+.|++. +|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG-AN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec-CC
Confidence 47888898888 8886543 4799999999999998865 5678999999999 54
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.13 E-value=0.053 Score=44.10 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=63.4
Q ss_pred hhHHHhccCCeeeEEEcCCCCcc-----cCCcccCCcCCCcEEeeCCCCCc-----ccChhhhcCCCCcEEecCCC---c
Q 044637 57 QCENFCKKFKHLRVLNLGSAVLD-----QYPPGLENFFYLKYLKLNIPSLK-----CLPSLLCTLINLQTLEMPSS---Y 123 (370)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~---~ 123 (370)
.+-..+..=+.|+.|+|++|.+. .+...+..-..|+.|+|++|.|. .+-+.+..-+.|++|+++++ .
T Consensus 61 ~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ 140 (197)
T 1pgv_A 61 SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV 140 (197)
T ss_dssp HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC
Confidence 44556677789999999999987 33444556689999999999988 34455666677999999865 2
Q ss_pred Cc-----cccHHHhccccCcEEEcc
Q 044637 124 ID-----HSPEDIWMMLKLMHLNFG 143 (370)
Q Consensus 124 ~~-----~lp~~i~~l~~L~~L~l~ 143 (370)
+. .+-..+..-+.|+.|+++
T Consensus 141 ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 141 LGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred cCHHHHHHHHHHHHhCCCcCeEecc
Confidence 33 233445566789999888
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=71.20 E-value=1.7 Score=41.42 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=17.0
Q ss_pred CEeEEecChhhhHHHHHHhc
Q 044637 8 TIKACYVPSLEFTSLALMAE 27 (370)
Q Consensus 8 ~v~~~~mHdli~~d~a~~i~ 27 (370)
.+.+|+|||+| ||+|++++
T Consensus 450 ~~~~~~mHdlv-~~~a~~~~ 468 (549)
T 2a5y_B 450 PVLTFKIDHII-HMFLKHVV 468 (549)
T ss_dssp SSCEEECCHHH-HHHHHTTS
T ss_pred CceEEEeChHH-HHHHHHHH
Confidence 45689999999 99999987
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=29.74 E-value=23 Score=36.95 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=18.7
Q ss_pred CCCCEeEEecChhhhHHHHHHhc
Q 044637 5 AGGTIKACYVPSLEFTSLALMAE 27 (370)
Q Consensus 5 ~~~~v~~~~mHdli~~d~a~~i~ 27 (370)
.+|...+|+|||+| |++|++.+
T Consensus 428 ~~~~~~~~~~h~l~-~~~~~~~~ 449 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQ-VDFLTEKN 449 (1249)
T ss_dssp ESSSSEEEECCHHH-HHHHHHHT
T ss_pred cCCCceEEEecHHH-HHHHHhhh
Confidence 35667789999999 99999886
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=22.72 E-value=39 Score=32.01 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=17.3
Q ss_pred CCCEeEEecChhhhHHHHHHh
Q 044637 6 GGTIKACYVPSLEFTSLALMA 26 (370)
Q Consensus 6 ~~~v~~~~mHdli~~d~a~~i 26 (370)
+|...+|+|||++ ||++...
T Consensus 429 ~~~~~~~~~H~lv-~~~~~~~ 448 (591)
T 1z6t_A 429 NGKSFRYYLHDLQ-VDFLTEK 448 (591)
T ss_dssp ETTEEEEECCHHH-HHHHHHH
T ss_pred CCCccEEEEcHHH-HHHHHhh
Confidence 4566789999999 9999987
Done!