Query 044639
Match_columns 430
No_of_seqs 120 out of 277
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:15:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1E-102 3E-107 766.8 19.6 378 12-426 14-407 (408)
2 PF03547 Mem_trans: Membrane t 100.0 2.3E-49 5E-54 404.5 28.2 369 11-419 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 3.8E-28 8.2E-33 243.0 21.9 296 8-424 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 1E-24 2.3E-29 218.7 23.1 304 7-421 2-319 (321)
5 PRK09903 putative transporter 99.9 2.1E-22 4.6E-27 201.7 25.0 295 14-426 8-313 (314)
6 TIGR00841 bass bile acid trans 96.4 0.023 5E-07 56.5 10.5 96 323-425 14-123 (286)
7 TIGR00841 bass bile acid trans 88.8 4.1 8.9E-05 40.5 10.8 129 15-160 140-272 (286)
8 COG0385 Predicted Na+-dependen 85.4 5.2 0.00011 40.6 9.3 84 334-424 69-152 (319)
9 PF01758 SBF: Sodium Bile acid 85.3 8.4 0.00018 35.6 10.1 85 334-425 29-114 (187)
10 PF13593 DUF4137: SBF-like CPA 79.5 27 0.00059 35.3 12.0 128 282-423 4-147 (313)
11 PF05684 DUF819: Protein of un 72.3 10 0.00022 39.4 6.8 88 18-108 28-119 (378)
12 TIGR00832 acr3 arsenical-resis 66.1 72 0.0016 32.4 11.4 84 334-424 74-158 (328)
13 COG0385 Predicted Na+-dependen 63.5 10 0.00022 38.5 4.6 45 75-119 224-268 (319)
14 TIGR00832 acr3 arsenical-resis 61.3 13 0.00029 37.7 5.1 53 73-128 245-297 (328)
15 KOG2262 Sexual differentiation 52.0 3.7 8E-05 45.3 -0.8 100 59-169 432-533 (761)
16 PRK12460 2-keto-3-deoxyglucona 36.6 1.1E+02 0.0024 31.1 6.9 101 15-124 166-267 (312)
17 COG5505 Predicted integral mem 36.4 1.9E+02 0.0042 29.5 8.4 123 32-161 47-174 (384)
18 PF13593 DUF4137: SBF-like CPA 29.4 1.8E+02 0.004 29.3 7.3 108 14-128 163-277 (313)
19 PRK11677 hypothetical protein; 28.7 60 0.0013 28.9 3.2 22 80-101 6-27 (134)
20 COG2323 Predicted membrane pro 28.4 1.8E+02 0.0039 28.2 6.6 76 15-97 8-83 (224)
21 PF12534 DUF3733: Leucine-rich 28.0 67 0.0015 25.0 2.9 44 62-105 12-60 (65)
22 PF06522 B12D: NADH-ubiquinone 27.4 62 0.0014 25.5 2.8 28 75-102 6-33 (73)
23 COG2991 Uncharacterized protei 27.2 56 0.0012 26.0 2.4 24 73-96 3-26 (77)
24 COG4129 Predicted membrane pro 26.8 1E+02 0.0022 31.6 4.9 94 7-102 49-151 (332)
25 PF03806 ABG_transport: AbgT p 25.6 68 0.0015 34.7 3.5 73 13-87 78-150 (502)
26 TIGR02185 Trep_Strep conserved 24.4 62 0.0013 30.2 2.6 72 32-105 99-188 (189)
27 PF06295 DUF1043: Protein of u 21.9 81 0.0018 27.6 2.7 22 80-101 2-23 (128)
28 COG3771 Predicted membrane pro 21.9 43 0.00093 27.6 0.9 24 81-104 46-69 (97)
29 PF09605 Trep_Strep: Hypotheti 21.4 75 0.0016 29.6 2.6 36 69-106 151-186 (186)
30 KOG2718 Na+-bile acid cotransp 20.3 1.1E+02 0.0024 31.9 3.7 75 44-118 107-188 (371)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-102 Score=766.75 Aligned_cols=378 Identities=38% Similarity=0.744 Sum_probs=329.3
Q ss_pred hhhHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHHH
Q 044639 12 VLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALGAVLG 91 (430)
Q Consensus 12 ~~Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG~~~g 91 (430)
+||++|+++|+.+||++|++|.|+|++|+||.+|++||++|+|||+|+|||+++|.+||.+|||||+|++++|++|.++|
T Consensus 14 v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG 93 (408)
T KOG2722|consen 14 VMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIG 93 (408)
T ss_pred cccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCC--hhhhhhhhHHHHHHHHHHHHhhheeeccccC
Q 044639 92 YSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFG--SECYDKGVAYVSFSQWIHVILVYTLVYHMME 169 (430)
Q Consensus 92 ~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~--~~~~~~GvaYi~~~~~l~~i~~wt~~y~~l~ 169 (430)
|+++|++|+|+++||++++||+|||+||||+++++|+|++ ++.||| |+|++||++|+++|||+|++++|||+||++.
T Consensus 94 ~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~-~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~ 172 (408)
T KOG2722|consen 94 WLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDE-DGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLL 172 (408)
T ss_pred HHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcc-cCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeec
Confidence 9999999999999999999999999999999999999999 999999 6899999999999999999999999999999
Q ss_pred CCch-hhhhhcCCccchhhhhhcccccccccccCCCCCCcccccccCCCCCCCcccccCcccccccccCCCcccCCCCCC
Q 044639 170 PPLE-YYEIVEGGEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIPVISQTNIPD 248 (430)
Q Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (430)
++.. ..+.+++...|...++ . + +++.+++++++++++..++..+++.
T Consensus 173 ~p~~~~~~~~~~~~Ve~~~~~--~---------------~------~~s~e~~~~~~~k~~ll~~~en~~~--------- 220 (408)
T KOG2722|consen 173 PPNLELMSALKESPVEALLES--V---------------P------QPSVESDEDSTCKTLLLASKENRNN--------- 220 (408)
T ss_pred CCchhhhhcCChhhhhhhhhc--c---------------C------CCCcccccccccccccccccccCCC---------
Confidence 8753 1111111111110000 0 0 1111223333334443222111100
Q ss_pred CCCCCCCCCCcchhhhhhhhhhccccccccCchHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHH
Q 044639 249 FDSMEDGTPPTKVVKKIRIVAEHTPIRQILQPPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVML 328 (430)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~ll 328 (430)
....++.+.+++.+...++.++|++++||++|+++|+++|.|||||+++|++++||++++|++.++|+++|||+++
T Consensus 221 ----~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~ill 296 (408)
T KOG2722|consen 221 ----QVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILL 296 (408)
T ss_pred ----ceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhh
Confidence 0011344556667777777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCc
Q 044639 329 VLGGI-------------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGY 395 (430)
Q Consensus 329 lLGan-------------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~ 395 (430)
+|||| +++|++++||+++|+.|++++..|+|+|.++.|||+|+||++||+++|||+|++++||++|+
T Consensus 297 vLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~ 376 (408)
T KOG2722|consen 297 VLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGV 376 (408)
T ss_pred hhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhh
Confidence 99999 89999999999999999999999999999887999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044639 396 AASEASALLFWQHVFALFSLALYLIIYFNLL 426 (430)
Q Consensus 396 ~q~e~s~iL~~qY~~~~islt~~~t~fl~~~ 426 (430)
+|+|||++|||+|+++.+++|+|+++|+|++
T Consensus 377 ~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv 407 (408)
T KOG2722|consen 377 AERECSVILFWTYAVASLSLTVWSVFFLWLV 407 (408)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999986
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.3e-49 Score=404.48 Aligned_cols=369 Identities=29% Similarity=0.514 Sum_probs=275.3
Q ss_pred hhhhHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHH
Q 044639 11 AVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALGAVL 90 (430)
Q Consensus 11 a~~Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG~~~ 90 (430)
++.+++++++++++||+++ |.|++++|.+|.+|++++++++|||+|++++++.+.+++.++|++++...+.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCChhhhhhhhHHHHHHHHHHHHhhheeeccccCC
Q 044639 91 GYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLVYHMMEP 170 (430)
Q Consensus 91 g~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~~~~~~~GvaYi~~~~~l~~i~~wt~~y~~l~~ 170 (430)
+|++.|++|.|+++++....+++|+|.+++|+.++++++.+ +|++|++++..+.++++|++|+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~------------~~~~~~~~~~~~~~i~~~~~~~~l~~~ 147 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE------------RGVAYAIIFDVVNNIILWSLGYFLLES 147 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc------------hhhhhehHHHHhhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999843 899999999999999999999998887
Q ss_pred CchhhhhhcCCccchhhhhhcccccccccccCCCCCCcccccccCCCCCCCcccccCccccc--ccccCCCcccCCCCCC
Q 044639 171 PLEYYEIVEGGEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIA--RLFNSIPVISQTNIPD 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 248 (430)
..+..+..++.+.+.++.+++ +++++..+.+.+++.. .+++.++++.+... ...++.++..+ ..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 215 (385)
T PF03547_consen 148 RSEKEDKSEEEPSSAESIDSE---QEDSDEMSLDGSSPSS--------TEEEIDEDGSPSSTPSQSSASAPSSVS-TSPS 215 (385)
T ss_pred ccccccccccccccccccccc---ccCCccccCCcccccc--------cccccccCCcccccccccccccchhhc-cCCc
Confidence 543211111000000000000 0000000000000000 00000000000000 00000000000 0000
Q ss_pred CCCCCCCCCCcchhhhhhhhhhccccccccCchHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHH
Q 044639 249 FDSMEDGTPPTKVVKKIRIVAEHTPIRQILQPPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVML 328 (430)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~ll 328 (430)
. +.+. ..+.+.+++.+....+..++.++|||++|+++|++++++|+.|.++++ .+++|+++++|++++|++|+
T Consensus 216 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~ 288 (385)
T PF03547_consen 216 P-SNST-GAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALF 288 (385)
T ss_pred c-cccc-hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHH
Confidence 0 0000 111111222222222222688999999999999999999999999999 79999999999999999999
Q ss_pred HHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCc
Q 044639 329 VLGGI-------------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGY 395 (430)
Q Consensus 329 lLGan-------------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~ 395 (430)
+||++ .....++.||+++|+++++++.+.. . |+....++++++++|+|++..++|+.+|.
T Consensus 289 ~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l-~~~~~~~~~~~~~~P~a~~~~~~a~~~~~ 361 (385)
T PF03547_consen 289 VLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------L-DGDMARVLILQAAMPTAINSFVIASLYGL 361 (385)
T ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------C-CHHHHHHHHHhccCCchHHHHHHHHHhCC
Confidence 99999 4445699999999999999877544 2 55577899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 044639 396 AASEASALLFWQHVFALFSLALYL 419 (430)
Q Consensus 396 ~q~e~s~iL~~qY~~~~islt~~~ 419 (430)
++.|+|..++|+|+++.+++|+|+
T Consensus 362 ~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 362 DEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999994
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=243.01 Aligned_cols=296 Identities=20% Similarity=0.297 Sum_probs=245.0
Q ss_pred hhhhhhhHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHH
Q 044639 8 AVNAVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALG 87 (430)
Q Consensus 8 i~~a~~Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG 87 (430)
++....++++++++.++||+++ |.|++++|.+|.+|++++++.+|||+|++++++-..++ +++..++...+.....+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 5677899999999999999999 99999999999999999999999999999999998777 89999999999999999
Q ss_pred HHHHHHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCChhhhhhhhHHHHHHHHHHHHhhheeeccc
Q 044639 88 AVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLVYHM 167 (430)
Q Consensus 88 ~~~g~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~~~~~~~GvaYi~~~~~l~~i~~wt~~y~~ 167 (430)
.+..++.+|++|.|++++++...++.|+|+|++++.+..++ .+++|++|.+++++++++.+|++|+-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~------------~G~~gl~~~~i~~~~~~~~~~~~g~~~ 146 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL------------FGEKGLAYAVIFLIIGLFLMFTLGVIL 146 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH------------cCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996655444 456899999999999999999998765
Q ss_pred cCCCchhhhhhcCCccchhhhhhcccccccccccCCCCCCcccccccCCCCCCCcccccCcccccccccCCCcccCCCCC
Q 044639 168 MEPPLEYYEIVEGGEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIPVISQTNIP 247 (430)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (430)
+....+ + +
T Consensus 147 l~~~~~----------~------------------------------------~-------------------------- 154 (311)
T COG0679 147 LARSGG----------G------------------------------------T-------------------------- 154 (311)
T ss_pred HHHhcC----------C------------------------------------c--------------------------
Confidence 443210 0 0
Q ss_pred CCCCCCCCCCCcchhhhhhhhhhccccccccCchHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHH
Q 044639 248 DFDSMEDGTPPTKVVKKIRIVAEHTPIRQILQPPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVM 327 (430)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~l 327 (430)
+ +...+.. .+-+.||+.+|.++|++..... +.. | ..++++.+++|++++|+++
T Consensus 155 ---------~----~~~~~~~-----~~~~~nP~i~a~i~g~~~~~~~----i~l---P--~~~~~~~~~l~~a~~pl~l 207 (311)
T COG0679 155 ---------N----KSLLSVL-----KKLLTNPLIIALILGLLLNLLG----ISL---P--APLDTAVDLLASAASPLAL 207 (311)
T ss_pred ---------h----hHHHHHH-----HHHHhCcHHHHHHHHHHHHHcC----CCC---c--HHHHHHHHHHHHhhhhHHH
Confidence 0 0000000 2456789999999999988755 112 2 2899999999999999999
Q ss_pred HHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCc
Q 044639 328 LVLGGI------------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGY 395 (430)
Q Consensus 328 llLGan------------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~ 395 (430)
+.+|.. .+......|+++.|++..++.+ -+|+ ++...-|++++.++|+|.+...+++-+|.
T Consensus 208 i~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~---~~~l----~~~~~~v~vl~~a~P~A~~~~v~a~~~~~ 280 (311)
T COG0679 208 IALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAK---LLGL----SGLALQVLVLLSAMPTAVNAYVLARQYGG 280 (311)
T ss_pred HHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH---HcCC----ChHHHHHHHHHhhCcHHhHHHHHHHHhCC
Confidence 999999 5555566699999999997433 2353 34444899999999999999999998887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044639 396 AASEASALLFWQHVFALFSLALYLIIYFN 424 (430)
Q Consensus 396 ~q~e~s~iL~~qY~~~~islt~~~t~fl~ 424 (430)
.+...+...+-|=.++.+++|.|..++.+
T Consensus 281 ~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 281 DPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777778888999998887765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.93 E-value=1e-24 Score=218.69 Aligned_cols=304 Identities=19% Similarity=0.234 Sum_probs=233.0
Q ss_pred chhhhhhhHHHHHHHHHhhHHh-hcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHH
Q 044639 7 DAVNAVLPLLKLLSIAVIGSLI-AHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTA 85 (430)
Q Consensus 7 ~i~~a~~Pvlkv~~i~~~G~~l-A~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~ 85 (430)
.+|..+..++-++++.++||++ . |.+++++|..|.+|++++++.+|||+|+.++++-..++.+..+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999999 8 999999999999999999999999999999985333233344333344455667
Q ss_pred HHHHHHHHhHh-hcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCChhhhhhhhHHHHHHHHHHHHhhheee
Q 044639 86 LGAVLGYSVTL-ICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLV 164 (430)
Q Consensus 86 iG~~~g~lv~~-i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~~~~~~~GvaYi~~~~~l~~i~~wt~~ 164 (430)
..++++|.+.| .+|.+++.++....++.++|.+.+-+-+++++-.+ ++ ..++.|+..+..-..+..|+.|
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~-~~--------~~~~~~~~~~~~~~~~~~~~~~ 150 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGE-EG--------AKILIAALFIDTGAVLMTIALG 150 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhcc-cc--------hhhhHHHHHHHhccchhHHHHH
Confidence 77889999988 88999999999999999999999999999999543 22 1136666666555577788877
Q ss_pred ccccCCCchhhhhhcCCccchhhhhhcccccccccccCCCCCCcccccccCCCCCCCcccccCcccccccccCCCcccCC
Q 044639 165 YHMMEPPLEYYEIVEGGEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIPVISQT 244 (430)
Q Consensus 165 y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (430)
+-+..... ++ + .+
T Consensus 151 ~~~~~~~~--------~~-~--------------------------------------~~-------------------- 163 (321)
T TIGR00946 151 LFLVSEDG--------AG-G--------------------------------------EG-------------------- 163 (321)
T ss_pred HHHhcccc--------cc-c--------------------------------------cc--------------------
Confidence 53321100 00 0 00
Q ss_pred CCCCCCCCCCCCCCcchhhhhhhhhhccccc-cccCchHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchH
Q 044639 245 NIPDFDSMEDGTPPTKVVKKIRIVAEHTPIR-QILQPPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATV 323 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~V 323 (430)
+..+..+..+.. ++ -+.||+.+|.++|+++....+ + ++ .++.|+++++|++++
T Consensus 164 ------------~~~~~~~~~~~~-----~~~~~~nP~iia~i~Gl~~~~~~i-~---lP-----~~l~~~l~~lg~~~~ 217 (321)
T TIGR00946 164 ------------SGESTRLMLIFV-----WKKLIKFPPLWAPLLSVILSLVGF-K---MP-----GLILKSISILSGATT 217 (321)
T ss_pred ------------cchhHHHHHHHH-----HHHHHhCCChHHHHHHHHHHHHhh-c---Cc-----HHHHHHHHHHHHHHH
Confidence 000000001111 23 346899999999999998763 1 11 589999999999999
Q ss_pred HHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcc
Q 044639 324 PSVMLVLGGI-----------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASL 392 (430)
Q Consensus 324 P~~lllLGan-----------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql 392 (430)
|++|+.+|.. .+...++.|+++.|++..++... +++ |+..+-+++++.++|+|.+...+++-
T Consensus 218 plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~---~~l----~~~~~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 218 PMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKL---IGL----RGLELSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHH---hCC----ChHHHHHHHHHHcCChhhHHHHHHHH
Confidence 9999999998 45666889999999999775442 232 67778999999999999999999999
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044639 393 RGYAASEASALLFWQHVFALFSLALYLII 421 (430)
Q Consensus 393 ~~~~q~e~s~iL~~qY~~~~islt~~~t~ 421 (430)
+|..+++++...+++-+++.+++|+|+.+
T Consensus 291 y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 291 YEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888889999999999999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.91 E-value=2.1e-22 Score=201.65 Aligned_cols=295 Identities=14% Similarity=0.177 Sum_probs=218.7
Q ss_pred hHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 044639 14 PLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALGAVLGYS 93 (430)
Q Consensus 14 Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG~~~g~l 93 (430)
-++-++++.++||++. |.+++++|..|.+|++++++.+||++|+++.+. +.+++.+-|-+.+...+.+...++.+|+
T Consensus 8 ~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (314)
T PRK09903 8 DLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWF 84 (314)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3556679999999999 999999999999999999999999999999875 5555553344556667777777788888
Q ss_pred hHh-hcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCChhhhhhhhHHHHHHHHHHHHhhheeeccccCCCc
Q 044639 94 VTL-ICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLVYHMMEPPL 172 (430)
Q Consensus 94 v~~-i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~~~~~~~GvaYi~~~~~l~~i~~wt~~y~~l~~~~ 172 (430)
+.+ ..|-+++.++....+++++|.|.+-+-+++++-.+ +.. -|+.|..++. +.+++.|+.|.-.++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~--------~~~-~~~~~a~~~~-~~~~~~~~~g~~~~~~~~ 154 (314)
T PRK09903 85 GCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGD--------SVS-TGLVVAIISI-IVNAITIPIGLYLLNPSS 154 (314)
T ss_pred HHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCc--------hhh-hhhHHHHHHH-HHHHHHHHHHHHHHcccc
Confidence 764 66777677777778889999999999999988433 211 2565555443 567888987754433211
Q ss_pred hhhhhhcCCccchhhhhhcccccccccccCCCCCCcccccccCCCCCCCcccccCcccccccccCCCcccCCCCCCCCCC
Q 044639 173 EYYEIVEGGEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIPVISQTNIPDFDSM 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (430)
. + ++
T Consensus 155 ~----------~-----------------------------------~~------------------------------- 158 (314)
T PRK09903 155 G----------A-----------------------------------DG------------------------------- 158 (314)
T ss_pred c----------c-----------------------------------cc-------------------------------
Confidence 0 0 00
Q ss_pred CCCCCCcchhhhhhhhhhccccccccCchHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHHHHhH
Q 044639 253 EDGTPPTKVVKKIRIVAEHTPIRQILQPPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVMLVLGG 332 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~lllLGa 332 (430)
.++..++.. .+-+.||+.+|.++|+++.+.. + .-| .++.|+++++|++++|+.|+.+|+
T Consensus 159 ----~~~~~~~~l--------~~~~~nP~iia~~~gl~~~l~~-i-------~lP-~~i~~~l~~lg~~~~PlaL~~iG~ 217 (314)
T PRK09903 159 ----KKNSNLSAL--------ISAAKEPVVWAPVLATILVLVG-V-------KIP-AAWDPTFNLIAKANSGVAVFAAGL 217 (314)
T ss_pred ----ccchHHHHH--------HHHHhchHHHHHHHHHHHHHcC-C-------CCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111 1335689999999999976421 1 111 599999999999999999999999
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCchhhhHHH
Q 044639 333 I----------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAASEASA 402 (430)
Q Consensus 333 n----------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~~q~e~s~ 402 (430)
. -.....+.|+++.|++..++... .|+ |+..+=+++++.++|+|.+...+++-+|...+.++.
T Consensus 218 ~L~~~~~~~~~~~~~~~~~Kli~~P~i~~~~~~~---~~l----~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~ 290 (314)
T PRK09903 218 TLAAHKFEFSAEIAYNTFLKLILMPLALLLVGMA---CHL----NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTA 290 (314)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHHHHHHHHH---cCC----CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHH
Confidence 8 34455778999999988654432 243 566667999999999999999999998876667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 044639 403 LLFWQHVFALFSLALYLIIYFNLL 426 (430)
Q Consensus 403 iL~~qY~~~~islt~~~t~fl~~~ 426 (430)
..+.+-.++++|+|+|+.+ ++++
T Consensus 291 ~v~~sTlls~iTlpl~~~l-~~~~ 313 (314)
T PRK09903 291 SLAVSVLGFVVTAPLWIYV-SRLV 313 (314)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhh
Confidence 8899999999999999985 5543
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.43 E-value=0.023 Score=56.53 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=76.6
Q ss_pred HHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHH
Q 044639 323 VPSVMLVLGGI--------------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAA 388 (430)
Q Consensus 323 VP~~lllLGan--------------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~ 388 (430)
+..+++.+|.+ .....++.|++++|+++.++.+.. + .||.+...+++..++|+|.+...
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~---~----l~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF---K----LPPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh---C----CCHHHHHHHHheeeCCCchHHHH
Confidence 56677777777 344557789999999998765422 3 48899999999999999999988
Q ss_pred HHcccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044639 389 IASLRGYAASEASALLFWQHVFALFSLALYLIIYFNL 425 (430)
Q Consensus 389 itql~~~~q~e~s~iL~~qY~~~~islt~~~t~fl~~ 425 (430)
+|+..|-...-++.....+=+++++++|+|+.++...
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~ 123 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKM 123 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764444467777889999999999999988754
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=88.76 E-value=4.1 Score=40.48 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhHHhhcccCCCCChhhhhh---hcchhhhhhhhHHHHHhhhhccccccc-hhhhHHHHHHHHHHHHHHHH
Q 044639 15 LLKLLSIAVIGSLIAHPKFQFVPKETFRI---LSKLVFVLFLPCLILNHLVSSISLKNF-ILWWFIPVNVVVSTALGAVL 90 (430)
Q Consensus 15 vlkv~~i~~~G~~lA~~r~~il~~~~~k~---ls~lv~~vf~PcLiFskla~sit~~~i-~~lw~ipl~~~l~~~iG~~~ 90 (430)
.+-+++-...|..+. |.- + +.+|. ++.+.. +++=++++.-++.+.. ++ .+.|-+-+..++...+|+.+
T Consensus 140 ~~~v~vPl~lG~~~r--~~~--p-~~~~~~~~~~~~s~-~~l~liv~~~~~~~~~--~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HKL--P-QIAKIILKVGLISV-FLLSVIIAVVGGINVE--NLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHH--HHh--H-HHHHHHHhCchHHH-HHHHHHHHHHHHhhHH--HHHHhhHHHHHHHHHHHHHHHHH
Confidence 666788888998876 321 2 22222 332222 1222444444443332 22 23344555667888999999
Q ss_pred HHHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCChhhhhhhhHHHHHHHHHHHHhh
Q 044639 91 GYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILV 160 (430)
Q Consensus 91 g~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~~~~~~~GvaYi~~~~~l~~i~~ 160 (430)
||.+.|.+|.+++.+.-+...++..|.+ +++.-+.. -|+++...-...|.......+.++-
T Consensus 212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~---lal~la~~------~f~~~~a~~~~~~~v~~~~~~~~~a 272 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISIEVGMQNSQ---LCSTIAQL------SFSPEVAVPSAIFPLIYALFQLAFA 272 (286)
T ss_pred HHHHHHHhCCCHhhheeeeeeeecccHH---HHHHHHHH------hcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 55554442 3444444445556554444444443
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=85.42 E-value=5.2 Score=40.59 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCchhhhHHHHHHHHHHHHHH
Q 044639 334 TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAASEASALLFWQHVFALF 413 (430)
Q Consensus 334 ~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~~q~e~s~iL~~qY~~~~i 413 (430)
..+-..+.-++++|++|+++.++.. . ||-..-=+++..+.|+.++.-.+|++.+-.-.-+-..-.-+=++.++
T Consensus 69 ~vligl~~qfvlmPlla~~~~~~~~------l-~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f 141 (319)
T COG0385 69 LVLIGLAAQFVLMPLLALLLAKLFP------L-PPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPF 141 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC------C-CHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3444588889999999999877433 3 67677778899999999999889998531111121223345667888
Q ss_pred HHHHHHHHHHH
Q 044639 414 SLALYLIIYFN 424 (430)
Q Consensus 414 slt~~~t~fl~ 424 (430)
..|+++.+|+.
T Consensus 142 ~tPllv~l~~~ 152 (319)
T COG0385 142 LTPLLVGLLAG 152 (319)
T ss_pred HHHHHHHHHhc
Confidence 88888888765
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=85.28 E-value=8.4 Score=35.60 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCchhhhHHHH-HHHHHHHHH
Q 044639 334 TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAASEASAL-LFWQHVFAL 412 (430)
Q Consensus 334 ~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~~q~e~s~i-L~~qY~~~~ 412 (430)
.++...+..++++|+++.++.... -.+||-+..-+++..+.|.+...-.+|.+-+ |+.+.|.- ....=..+.
T Consensus 29 ~l~~~l~~~~~i~Plla~~l~~~~------~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~-Gd~~ls~~lt~istll~~ 101 (187)
T PF01758_consen 29 LLLIGLLAQFLIMPLLAFGLAWLL------LPLSPALALGLLLVAACPGGPASNVFTYLAG-GDVALSVSLTLISTLLAP 101 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HH------TT--HHHHHHHHHHHHS-B-THHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC-CCcccccceeeHHHHHHH
Confidence 344457899999999999866211 1247789999999999999999888888744 34444333 455558899
Q ss_pred HHHHHHHHHHHHh
Q 044639 413 FSLALYLIIYFNL 425 (430)
Q Consensus 413 islt~~~t~fl~~ 425 (430)
+.+|+|..++..-
T Consensus 102 ~~~P~~~~l~~~~ 114 (187)
T PF01758_consen 102 FLMPLLLYLLSGG 114 (187)
T ss_dssp HHHHHHHHHHH-G
T ss_pred HHHHHHHHHHhcc
Confidence 9999998877643
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=79.48 E-value=27 Score=35.26 Aligned_cols=128 Identities=15% Similarity=0.262 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHHHHhHH--------------HHHHHHHHHHHHHH
Q 044639 282 VFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVMLVLGGI--------------TTVGIVTARLLVLP 347 (430)
Q Consensus 282 ~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~lllLGan--------------~iv~i~~~RliilP 347 (430)
.+++++++..|..=|-..-- ..+++. ++....+|..+.++-|.+ ..+.....=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~g~~---~~~~~~-----~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAPGAA---GGVIKP-----EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCccccc---CCccch-----hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56667777766544332111 112211 233334477888888877 45555777899999
Q ss_pred HHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHH-HHcccCchhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 044639 348 LIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAA-IASLRGYAASEASAL-LFWQHVFALFSLALYLIIYF 423 (430)
Q Consensus 348 iiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~-itql~~~~q~e~s~i-L~~qY~~~~islt~~~t~fl 423 (430)
++|.++....... .|+-+..=+++..|+||.++.+. +|+.-| |+.+.+.+ =.-+-.+.++..|+|+.+++
T Consensus 76 ll~~~~~~l~~~~-----~~~~l~~Gl~~~~~lPtTv~S~v~~T~~Ag-GN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPAF-----LPPELALGLLILACLPTTVSSSVVLTRLAG-GNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhcc-----CCHHHHHHHHHHhhCCchhhHHHHHHHHcC-CCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 9999877654421 25568888999999999988764 777643 22233222 34567788888999988887
No 11
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=72.28 E-value=10 Score=39.45 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=58.6
Q ss_pred HHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhh----HHHHHHHHHHHHHHHHHHH
Q 044639 18 LLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWW----FIPVNVVVSTALGAVLGYS 93 (430)
Q Consensus 18 v~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw----~ipl~~~l~~~iG~~~g~l 93 (430)
++++...|.+++ ..|+++......+-+.+...++|.-++==|-+ .+.++++..+ .+.+...+.+++|...++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~-~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLS-ADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999 99999555556677888888877766654433 3444444443 3445557778888888877
Q ss_pred hHhhcCCCCccccee
Q 044639 94 VTLICQPPPQFFRFT 108 (430)
Q Consensus 94 v~~i~~~P~~~~~~i 108 (430)
+.+-.--|+.|+..-
T Consensus 105 l~~~~l~~~~wk~ag 119 (378)
T PF05684_consen 105 LFGGFLGPEGWKIAG 119 (378)
T ss_pred HHhhcccchHHHHHH
Confidence 766554566666543
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=66.15 E-value=72 Score=32.43 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCchhhhHHHHH-HHHHHHHH
Q 044639 334 TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAASEASALL-FWQHVFAL 412 (430)
Q Consensus 334 ~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~~q~e~s~iL-~~qY~~~~ 412 (430)
.+....+.-++++|+++.++.+.. ++ ++|-+..=+++..+.|.++....+|.+.+ |+.+.|..+ -..=.++.
T Consensus 74 ~~~~~~~~qfvi~Plla~~l~~l~--~~----~~p~l~~GliLv~~~Pgg~~S~v~T~lAk-Gnvalsv~lt~~stLl~~ 146 (328)
T TIGR00832 74 GLILSLFINWIIGPFLMFLLAWLF--LR----DLFEYIAGLILLGLARCIAMVFVWNQLAK-GDPEYTLVLVAVNSLFQV 146 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--cC----CCHHHHHHHHHHHhcchHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Confidence 455568889999999999865532 12 35668889999999999998878888843 333444443 45555667
Q ss_pred HHHHHHHHHHHH
Q 044639 413 FSLALYLIIYFN 424 (430)
Q Consensus 413 islt~~~t~fl~ 424 (430)
+..|.+..+|+.
T Consensus 147 ~~~P~l~~ll~~ 158 (328)
T TIGR00832 147 FLYAPLAWLLLG 158 (328)
T ss_pred HHHHHHHHHHHh
Confidence 777777776664
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=63.53 E-value=10 Score=38.51 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCcccceeeEEEecCCcCC
Q 044639 75 FIPVNVVVSTALGAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGY 119 (430)
Q Consensus 75 ~ipl~~~l~~~iG~~~g~lv~~i~~~P~~~~~~il~~~~fgN~~~ 119 (430)
.+-+..+++-.+|+..||...|.++.++..+.-+..+++-.|++.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 466777899999999999999999999999999999999999763
No 14
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=61.34 E-value=13 Score=37.71 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHh
Q 044639 73 WWFIPVNVVVSTALGAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSV 128 (430)
Q Consensus 73 lw~ipl~~~l~~~iG~~~g~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl 128 (430)
++.+-...++++.+|+.+||.+.|.+|.+++.+.-+..+++-.|+ ++++.-+.
T Consensus 245 i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 245 IALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 334444567889999999999999999999999999999887774 56776666
No 15
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=52.00 E-value=3.7 Score=45.26 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=66.6
Q ss_pred HhhhhccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhcCCC-CcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCC
Q 044639 59 NHLVSSISLKNFILWWFIPVNVVVSTALGAVLGYSVTLICQPP-PQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPF 137 (430)
Q Consensus 59 skla~sit~~~i~~lw~ipl~~~l~~~iG~~~g~lv~~i~~~P-~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF 137 (430)
+||-+. .++.-+||+..+ .++...++..++...+.- +--.++++.+|+++=...+|+.+++|..++ ..
T Consensus 432 trlMkk--YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq----~~ 500 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQ----TP 500 (761)
T ss_pred HHHHHH--hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccC----Cc
Confidence 445555 788889999543 344445555655555542 223456666778889999999999999765 34
Q ss_pred C-hhhhhhhhHHHHHHHHHHHHhhheeeccccC
Q 044639 138 G-SECYDKGVAYVSFSQWIHVILVYTLVYHMME 169 (430)
Q Consensus 138 ~-~~~~~~GvaYi~~~~~l~~i~~wt~~y~~l~ 169 (430)
| +.-.+.=+.|+.=..=++.+.+-+|||.-|+
T Consensus 501 GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~ 533 (761)
T KOG2262|consen 501 GLNIITEYIIGYIYPGRPIANLCFKTYGYISMT 533 (761)
T ss_pred cHHHHHHHHHHhhcCCchHHHHHHHHhchhhHH
Confidence 4 4455555566655566677888888887554
No 16
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=36.59 E-value=1.1e+02 Score=31.11 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHH-HHHHHHHHHHHHH
Q 044639 15 LLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNV-VVSTALGAVLGYS 93 (430)
Q Consensus 15 vlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~-~l~~~iG~~~g~l 93 (430)
++-.++-..+|+++. | ++++.|+.+++-+-. .+|-.+| -++.++|++++.+.|+--+.. ++...+....++.
T Consensus 166 lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~f-~I~f~~f-~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 166 LVAALLPLVLGMILG----N-LDPDMRKFLTKGGPL-LIPFFAF-ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHHHHh----c-cchhhHHHHhccceE-eHHHHHH-HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 355778888999887 3 666666666655332 4444444 489999999999998655444 5566677777888
Q ss_pred hHhhcCCCCcccceeeEEEecCCcCChhHHH
Q 044639 94 VTLICQPPPQFFRFTIIMTAFGNTGYIPLSV 124 (430)
Q Consensus 94 v~~i~~~P~~~~~~il~~~~fgN~~~LPia~ 124 (430)
+.|++|.+++. ++......||.=-=|-++
T Consensus 239 i~rllg~~~~~--g~li~stAGnAIcgpAAV 267 (312)
T PRK12460 239 ADRLVGGTGIA--GAAASSTAGNAVATPLAI 267 (312)
T ss_pred HHHHhCCChhH--HHHHHHHhhHHHHHHHHH
Confidence 88888877766 444444567764444443
No 17
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=36.37 E-value=1.9e+02 Score=29.54 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=79.7
Q ss_pred cCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhh----HHHHHHHHHHHHHHHHHHHhHhhcCCCCcccc-
Q 044639 32 KFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWW----FIPVNVVVSTALGAVLGYSVTLICQPPPQFFR- 106 (430)
Q Consensus 32 r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw----~ipl~~~l~~~iG~~~g~lv~~i~~~P~~~~~- 106 (430)
..|+++ .....++.+-|..+|+.|+--|= +.+.++|.+++ ++-+.+-+...+|+++++.+-|=+-. .-|+-
T Consensus 47 t~Glfs--~~S~~y~~v~n~llpamI~lmLl-qcd~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ksf~g-d~Wka~ 122 (384)
T COG5505 47 TVGLFS--VESPVYDTVWNYLLPAMIPLMLL-QCDVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLLKSFIG-DLWKAG 122 (384)
T ss_pred hccccc--ccCcHHHHHHHHHHHHHHHHHHH-HccHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHhhh
Confidence 789995 77888999999999999997664 57888887776 66666677778888888877764444 33443
Q ss_pred eeeEEEecCCcCChhHHHHHHhhcCCCCCCCChhhhhhhhHHHHHHHHHHHHhhh
Q 044639 107 FTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVY 161 (430)
Q Consensus 107 ~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~~~~~~~GvaYi~~~~~l~~i~~w 161 (430)
+.+.+.=-|-+-| .+=+|+.=.. ++.-|+..-...=+-|...+..+-.+..+
T Consensus 123 gmi~gSytGGSaN--mAAmqaaLeV-P~~~fsatlaaDtv~ySll~~lli~iVpy 174 (384)
T COG5505 123 GMISGSYTGGSAN--MAAMQAALEV-PGEYFSATLAADTVMYSLLFFLLISIVPY 174 (384)
T ss_pred hheeeeeeCCcch--HHHHHhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444 3445554433 55555555555566777655444444433
No 18
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=29.38 E-value=1.8e+02 Score=29.29 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhHHhhcccCCCCChhhh--hhhcchhhhhhhhHHHHHhhhhccccc---cch--hhhHHHHHHHHHHHH
Q 044639 14 PLLKLLSIAVIGSLIAHPKFQFVPKETF--RILSKLVFVLFLPCLILNHLVSSISLK---NFI--LWWFIPVNVVVSTAL 86 (430)
Q Consensus 14 Pvlkv~~i~~~G~~lA~~r~~il~~~~~--k~ls~lv~~vf~PcLiFskla~sit~~---~i~--~lw~ipl~~~l~~~i 86 (430)
=++++++-..+|-++- |. +.+.++ |..-+.+=...+-.++++...++...+ ++. ++..+-...+....+
T Consensus 163 L~~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV 238 (313)
T ss_pred HHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence 3456666677786653 22 333222 222233344555667777777764322 232 333444445667778
Q ss_pred HHHHHHHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHh
Q 044639 87 GAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSV 128 (430)
Q Consensus 87 G~~~g~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl 128 (430)
++.++|...|.++.+++.+--+.+||+ --|+|+++..+-
T Consensus 239 ~l~~~~~~~r~~~~~~~d~iA~~F~gs---~Ksl~~gvpl~~ 277 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDRIAVLFCGS---QKSLALGVPLAS 277 (313)
T ss_pred HHHHHHHHHhhcCCChhhEEEEEEEcC---cCcchhHHHHHH
Confidence 889999999999999999988888877 455667665443
No 19
>PRK11677 hypothetical protein; Provisional
Probab=28.69 E-value=60 Score=28.88 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhHhhcCCC
Q 044639 80 VVVSTALGAVLGYSVTLICQPP 101 (430)
Q Consensus 80 ~~l~~~iG~~~g~lv~~i~~~P 101 (430)
+++.+++|.++|+++.|++..-
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 3578899999999999975544
No 20
>COG2323 Predicted membrane protein [Function unknown]
Probab=28.36 E-value=1.8e+02 Score=28.15 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHHHHHh
Q 044639 15 LLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALGAVLGYSV 94 (430)
Q Consensus 15 vlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG~~~g~lv 94 (430)
++|-+++-.+++++. | .-+||.+|+|...=|.=.++...++.....++=..+|-.-+.+++..++..+++|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766 3 568999999999999999999999999988876777767777777888888889888
Q ss_pred Hhh
Q 044639 95 TLI 97 (430)
Q Consensus 95 ~~i 97 (430)
.|-
T Consensus 81 ~ks 83 (224)
T COG2323 81 LKS 83 (224)
T ss_pred hcc
Confidence 764
No 21
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=28.01 E-value=67 Score=25.01 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=32.3
Q ss_pred hhccccccchhhh--HHHHHHHHHHHHHHHHHHHhH---hhcCCCCccc
Q 044639 62 VSSISLKNFILWW--FIPVNVVVSTALGAVLGYSVT---LICQPPPQFF 105 (430)
Q Consensus 62 a~sit~~~i~~lw--~ipl~~~l~~~iG~~~g~lv~---~i~~~P~~~~ 105 (430)
.++.+.+.+|-|| ++|=..+++..+|.+.|-+-. ++.+.|.+..
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~~ 60 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTSS 60 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCccc
Confidence 4566889999999 888888888877777765533 5667777644
No 22
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=27.37 E-value=62 Score=25.50 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCC
Q 044639 75 FIPVNVVVSTALGAVLGYSVTLICQPPP 102 (430)
Q Consensus 75 ~ipl~~~l~~~iG~~~g~lv~~i~~~P~ 102 (430)
++||.+++.+++|++.+.+++.++.-|.
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999998766553
No 23
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.21 E-value=56 Score=25.97 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHh
Q 044639 73 WWFIPVNVVVSTALGAVLGYSVTL 96 (430)
Q Consensus 73 lw~ipl~~~l~~~iG~~~g~lv~~ 96 (430)
.|++-+.+.++.++|+.+|+++.|
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhheec
Confidence 577888889999999999999886
No 24
>COG4129 Predicted membrane protein [Function unknown]
Probab=26.77 E-value=1e+02 Score=31.62 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=62.1
Q ss_pred chhhhhhhHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHH---------
Q 044639 7 DAVNAVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIP--------- 77 (430)
Q Consensus 7 ~i~~a~~Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ip--------- 77 (430)
-++-+++-...-+.-+.+|.++|.--.=+++ ..-..=-+++.++.||+++-|+...+....+.-..+++
T Consensus 49 t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g--~~~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~~ 126 (332)
T COG4129 49 TIKRSLKRALQRLLGNALGAILAVLFFLLFG--QNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLI 126 (332)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhHH
Confidence 3455667777778888888777621111111 01111235677889999999999955555444444332
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCC
Q 044639 78 VNVVVSTALGAVLGYSVTLICQPPP 102 (430)
Q Consensus 78 l~~~l~~~iG~~~g~lv~~i~~~P~ 102 (430)
.|=++.+.+|...|.++..++.+|+
T Consensus 127 ~~r~l~~~vG~~~a~lvn~~~~~~~ 151 (332)
T COG4129 127 FNRFLLVFVGVGVAFLVNLVMPPPD 151 (332)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCch
Confidence 2247889999999999999999998
No 25
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=25.61 E-value=68 Score=34.70 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHH
Q 044639 13 LPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALG 87 (430)
Q Consensus 13 ~Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG 87 (430)
.|-+.+++++.+|.-.| +|.|++++-.||.+.+.-=...+|.++|.-+-+++-.|- --+-.+|+..++...+|
T Consensus 78 F~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDA-g~Vvl~PL~a~iF~~~G 150 (502)
T PF03806_consen 78 FPPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDA-GYVVLPPLAAMIFAAVG 150 (502)
T ss_pred CCcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcccccc-eeEeHHhhHHHHHHHcC
Confidence 35677888888888777 599999999999999999999999999999999995443 33335888888877543
No 26
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=24.40 E-value=62 Score=30.22 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=44.7
Q ss_pred cCCCCChhhhhhhcchhhhh------hhhHHHHH-----hhhhcc-c------cccchhhhHHHHHHHHHHHHHHHHHHH
Q 044639 32 KFQFVPKETFRILSKLVFVL------FLPCLILN-----HLVSSI-S------LKNFILWWFIPVNVVVSTALGAVLGYS 93 (430)
Q Consensus 32 r~~il~~~~~k~ls~lv~~v------f~PcLiFs-----kla~si-t------~~~i~~lw~ipl~~~l~~~iG~~~g~l 93 (430)
|.|=-....|..++..++.. ++|...+. ++.++- + ..+..+.|.+++..+.+++.|.+-+++
T Consensus 99 ~~g~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~t~v~~~iG~~i 178 (189)
T TIGR02185 99 STGGYKNKRKVTIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVIMIVLTAVAGIAGVLI 178 (189)
T ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 44433334555666555542 35666643 233322 2 233456788889988888888888898
Q ss_pred hHhhcCCCCccc
Q 044639 94 VTLICQPPPQFF 105 (430)
Q Consensus 94 v~~i~~~P~~~~ 105 (430)
-+|++| |||+
T Consensus 179 G~kllk--KHF~ 188 (189)
T TIGR02185 179 GKKLLK--KHFE 188 (189)
T ss_pred HHHHHH--HhcC
Confidence 888887 6765
No 27
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.94 E-value=81 Score=27.59 Aligned_cols=22 Identities=9% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHhhcCCC
Q 044639 80 VVVSTALGAVLGYSVTLICQPP 101 (430)
Q Consensus 80 ~~l~~~iG~~~g~lv~~i~~~P 101 (430)
+++.+++|.++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999876544
No 28
>COG3771 Predicted membrane protein [Function unknown]
Probab=21.90 E-value=43 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHhhcCCCCcc
Q 044639 81 VVSTALGAVLGYSVTLICQPPPQF 104 (430)
Q Consensus 81 ~l~~~iG~~~g~lv~~i~~~P~~~ 104 (430)
...|++|.++||+++-++...-+.
T Consensus 46 a~lF~~G~~lgwli~g~fy~k~~l 69 (97)
T COG3771 46 ATLFAAGFALGWLICGLFYLKVRL 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999998877655443
No 29
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=21.39 E-value=75 Score=29.55 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=29.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHhhcCCCCcccc
Q 044639 69 NFILWWFIPVNVVVSTALGAVLGYSVTLICQPPPQFFR 106 (430)
Q Consensus 69 ~i~~lw~ipl~~~l~~~iG~~~g~lv~~i~~~P~~~~~ 106 (430)
++.+.|.+++..+++++.|.+-+++-+|++| |||++
T Consensus 151 ~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk--KHF~K 186 (186)
T PF09605_consen 151 SFFTPWMLIIIIIITFVGALLGALLGKKLLK--KHFEK 186 (186)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 6777788999998888888888888888876 77653
No 30
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=20.34 E-value=1.1e+02 Score=31.87 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=55.6
Q ss_pred hcchhhhhhhhHHHHHhhhhc--cccccchhhhHHHHH----HHHHHHHHHHHHHHhHhhcCCCCcc-cceeeEEEecCC
Q 044639 44 LSKLVFVLFLPCLILNHLVSS--ISLKNFILWWFIPVN----VVVSTALGAVLGYSVTLICQPPPQF-FRFTIIMTAFGN 116 (430)
Q Consensus 44 ls~lv~~vf~PcLiFskla~s--it~~~i~~lw~ipl~----~~l~~~iG~~~g~lv~~i~~~P~~~-~~~il~~~~fgN 116 (430)
.+.++-.++.|-+.+++++-- .+.|+.+..+--|.- ++-.+.+.-.+|+.+.+.+..|+++ .++++.+|..|=
T Consensus 107 ~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~ 186 (371)
T KOG2718|consen 107 FTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPG 186 (371)
T ss_pred ceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCC
Confidence 444555566678877776654 478888887744433 3446778888899999999999999 799999998874
Q ss_pred cC
Q 044639 117 TG 118 (430)
Q Consensus 117 ~~ 118 (430)
-+
T Consensus 187 g~ 188 (371)
T KOG2718|consen 187 GG 188 (371)
T ss_pred cc
Confidence 43
Done!