Query 044639
Match_columns 430
No_of_seqs 120 out of 277
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.0 0.042 1.4E-06 54.4 11.3 124 280-423 19-156 (332)
2 3zux_A Transporter, ASBTNM; tr 31.7 23 0.00079 34.5 2.7 48 78-128 232-279 (332)
3 2zjs_E Preprotein translocase 6.8 4.3E+02 0.015 18.7 3.5 23 405-427 27-49 (60)
4 2oar_A Large-conductance mecha 5.4 5.8E+02 0.02 22.5 4.1 23 329-351 45-68 (174)
5 1q90_G Cytochrome B6F complex 5.4 2.2E+02 0.0076 18.7 1.0 18 285-302 5-23 (37)
6 1v54_L VIIIA, cytochrome C oxi 4.9 7.1E+02 0.024 17.0 3.5 22 401-422 21-42 (47)
7 1vf5_F Protein PET M; photosyn 4.5 8.1E+02 0.028 15.8 3.9 24 76-99 8-31 (35)
8 3dl8_C SECE; RECA-type ATPase 4.3 5.3E+02 0.018 18.5 2.6 23 405-427 26-48 (65)
9 1zcd_A Na(+)/H(+) antiporter 1 4.3 2.6E+02 0.0088 27.8 1.1 95 37-131 248-351 (388)
10 1q90_M Cytochrome B6F complex 4.0 9.4E+02 0.032 15.9 4.0 24 75-98 8-31 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.98 E-value=0.042 Score=54.40 Aligned_cols=124 Identities=10% Similarity=-0.037 Sum_probs=89.7
Q ss_pred chHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHHHHhHH--------------HHHHHHHHHHHH
Q 044639 280 PPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVMLVLGGI--------------TTVGIVTARLLV 345 (430)
Q Consensus 280 Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~lllLGan--------------~iv~i~~~Rlii 345 (430)
+-.+.++++.++|..=|=..- .++ ..-..++.++++..|.+ ......+.++++
T Consensus 19 ~~~l~i~~~~~lg~~~P~~~~------~~~-------~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 19 TFSLWAALFAAAAFFAPDTFK------WAG-------PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp THHHHHHHHHHHHHHCGGGTG------GGG-------GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcchhhh------hhH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 446777777777765331100 111 12235788999999999 344558899999
Q ss_pred HHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044639 346 LPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAASEASALLFWQHVFALFSLALYLIIYF 423 (430)
Q Consensus 346 lPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~~q~e~s~iL~~qY~~~~islt~~~t~fl 423 (430)
+|+++.++.... + .||.+...+++..++|++.+...+|++.+-...-+...-..+=.++++++|+|..+++
T Consensus 86 ~Pll~~~l~~~~---~----l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 86 MPATAWCLSKLL---N----LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHT---T----CCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---C----CChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999866532 2 5899999999999999999988889886633233455567888899999999988876
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=31.69 E-value=23 Score=34.51 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHh
Q 044639 78 VNVVVSTALGAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSV 128 (430)
Q Consensus 78 l~~~l~~~iG~~~g~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl 128 (430)
+..+++..+|+.+||.+.|.+|.|++.+.-+...|+..|+ .+++..+.
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs---~lai~lA~ 279 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS---GLAAALAA 279 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH---HHHHHHHH
Confidence 3457788999999999999999999988888887888888 34544444
No 3
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=6.82 E-value=4.3e+02 Score=18.70 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044639 405 FWQHVFALFSLALYLIIYFNLLL 427 (430)
Q Consensus 405 ~~qY~~~~islt~~~t~fl~~~~ 427 (430)
.++|....+..++.++.|+++++
T Consensus 27 ~~~~t~vViv~v~i~~~~~~~vD 49 (60)
T 2zjs_E 27 VVEGTQAILLFTLAFMVILGLYD 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888865
No 4
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=5.42 E-value=5.8e+02 Score=22.50 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=13.4
Q ss_pred HHhHH-HHHHHHHHHHHHHHHHHH
Q 044639 329 VLGGI-TTVGIVTARLLVLPLIGI 351 (430)
Q Consensus 329 lLGan-~iv~i~~~RliilPiiGv 351 (430)
++||. +.+---++.=+++|+||+
T Consensus 45 IIGaAF~~IVtSlV~dIImPlIgl 68 (174)
T 2oar_A 45 VIGTAFTALVTKFTDSIITPLINR 68 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 34444 333334566788899993
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.40 E-value=2.2e+02 Score=18.68 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=10.1
Q ss_pred HHHHHHhhcchh-hhhccc
Q 044639 285 SLFAILIGIIPG-LKSFAV 302 (430)
Q Consensus 285 ~ilgiii~~IP~-lk~lf~ 302 (430)
.+.|++.|+||- +--+|+
T Consensus 5 lL~GIVlGlipvtlaGLfv 23 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFV 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHH
Confidence 356777777774 333443
No 6
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=4.94 E-value=7.1e+02 Score=17.00 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044639 401 SALLFWQHVFALFSLALYLIIY 422 (430)
Q Consensus 401 s~iL~~qY~~~~islt~~~t~f 422 (430)
-.+.+|.|...-++.|+.++.+
T Consensus 21 ~~~~~~~f~g~GF~~PF~i~~~ 42 (47)
T 1v54_L 21 LLAMMTLFFGSGFAAPFFIVRH 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3457899999999999988754
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.49 E-value=8.1e+02 Score=15.82 Aligned_cols=24 Identities=17% Similarity=-0.039 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcC
Q 044639 76 IPVNVVVSTALGAVLGYSVTLICQ 99 (430)
Q Consensus 76 ipl~~~l~~~iG~~~g~lv~~i~~ 99 (430)
+......++.+|...|++.-|+-+
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhheeec
Confidence 455666778899999999888753
No 8
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=4.26 E-value=5.3e+02 Score=18.55 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044639 405 FWQHVFALFSLALYLIIYFNLLL 427 (430)
Q Consensus 405 ~~qY~~~~islt~~~t~fl~~~~ 427 (430)
.++|.+.++..++.++.|+++++
T Consensus 26 ~~~~T~vViv~v~i~~~~i~~vD 48 (65)
T 3dl8_C 26 VVKATISVIIFSLAIGVYLWILD 48 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777888887765
No 9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=4.25 E-value=2.6e+02 Score=27.84 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=60.8
Q ss_pred ChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhh-HHHHHHHHHHHHHHHH-----HHHhHhhc--CCCCcccc-e
Q 044639 37 PKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWW-FIPVNVVVSTALGAVL-----GYSVTLIC--QPPPQFFR-F 107 (430)
Q Consensus 37 ~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw-~ipl~~~l~~~iG~~~-----g~lv~~i~--~~P~~~~~-~ 107 (430)
.++..+.+...+..+++|-..|.+.+=+++.+....+. ..++-+.+.-.+|-.+ +|+..|+. +.|+.+.+ -
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 45677788888989999999999999888774332220 1111222223444433 46665555 67776533 4
Q ss_pred eeEEEecCCcCChhHHHHHHhhcC
Q 044639 108 TIIMTAFGNTGYIPLSVVSSVCHN 131 (430)
Q Consensus 108 il~~~~fgN~~~LPia~v~sl~~~ 131 (430)
....|.-.|++=..=-++..++-+
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~ 351 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFG 351 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHST
T ss_pred HHHHHHHhccchHHHHHHHHHhcc
Confidence 466667788888777777888765
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=4.03 E-value=9.4e+02 Score=15.90 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhc
Q 044639 75 FIPVNVVVSTALGAVLGYSVTLIC 98 (430)
Q Consensus 75 ~ipl~~~l~~~iG~~~g~lv~~i~ 98 (430)
-+...+..++.+|..+|++.-|+-
T Consensus 8 ~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 8 GTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566677888999999988864
Done!