Query 044639
Match_columns 430
No_of_seqs 120 out of 277
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 08:50:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044639.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044639hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 9.7 74 0.0054 29.1 3.0 46 282-329 6-54 (405)
2 d2oara1 f.16.1.1 (A:10-118) Ga 6.0 2.6E+02 0.019 20.7 4.1 25 328-352 12-37 (109)
3 d2e74d2 f.23.12.1 (D:12-45) IS 5.2 81 0.0059 18.5 0.4 29 275-303 5-33 (34)
4 d1q90g_ f.23.26.1 (G:) PetG su 4.5 1.4E+02 0.0099 17.1 1.0 18 285-302 5-23 (30)
5 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.3 1E+03 0.074 20.5 8.6 65 41-105 32-103 (405)
6 d1jb0m_ f.23.19.1 (M:) Subunit 3.2 1.8E+02 0.013 16.5 0.9 13 285-297 8-20 (31)
7 d1oedc_ f.36.1.1 (C:) Acetylch 2.6 1.1E+03 0.083 18.2 6.6 20 10-29 7-26 (260)
8 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.6 2.1E+02 0.015 19.4 0.7 14 35-48 37-50 (67)
9 d1m8pa3 c.37.1.15 (A:391-573) 2.5 3.7E+02 0.027 19.4 2.3 23 101-123 1-23 (183)
10 d3b60a2 f.37.1.1 (A:10-328) Mu 2.3 1.2E+03 0.087 17.7 7.0 41 51-92 33-74 (319)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.74 E-value=74 Score=29.10 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcchhhhhcccCC--CCchhhHHH-HHHhhccchHHHHHHH
Q 044639 282 VFASLFAILIGIIPGLKSFAVGS--DAPLGFITD-SLDIVAQATVPSVMLV 329 (430)
Q Consensus 282 ~~a~ilgiii~~IP~lk~lf~~~--~~pL~fi~d-~~~~lG~a~VP~~lll 329 (430)
.+|+++|+++|.+= +.....+ ..-++++.| +.+.+--..+|++..-
T Consensus 6 li~lv~Gi~~G~~~--~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~s 54 (405)
T d2nwwa1 6 LIGLILGAIVGLIL--GHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFAS 54 (405)
T ss_dssp HHHHHHHHHHHHHH--HTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888642 1111000 122455555 3566666777777654
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.98 E-value=2.6e+02 Score=20.67 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.5
Q ss_pred HHHhHH-HHHHHHHHHHHHHHHHHHH
Q 044639 328 LVLGGI-TTVGIVTARLLVLPLIGIG 352 (430)
Q Consensus 328 llLGan-~iv~i~~~RliilPiiGv~ 352 (430)
+++||. +.+--.++.-+++|+||..
T Consensus 12 vIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 12 VVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 466777 4444466777899999974
No 3
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.16 E-value=81 Score=18.53 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.5
Q ss_pred ccccCchHHHHHHHHHhhcchhhhhcccC
Q 044639 275 RQILQPPVFASLFAILIGIIPGLKSFAVG 303 (430)
Q Consensus 275 ~~~~~Pp~~a~ilgiii~~IP~lk~lf~~ 303 (430)
|+|||=-+.+.+-|...|..-|+-+-|++
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 56777778999999999988887777765
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.50 E-value=1.4e+02 Score=17.08 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=11.1
Q ss_pred HHHHHHhhcchh-hhhccc
Q 044639 285 SLFAILIGIIPG-LKSFAV 302 (430)
Q Consensus 285 ~ilgiii~~IP~-lk~lf~ 302 (430)
.+.|++.|+||- +-.+|+
T Consensus 5 ll~GivlGlipiTl~Glfv 23 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGLFV 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHHHH
Confidence 356777777775 444444
No 5
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.29 E-value=1e+03 Score=20.55 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=43.3
Q ss_pred hhhhcchhhhh---hhhHHHHHhhhhcc-cc--ccchhhhH-HHHHHHHHHHHHHHHHHHhHhhcCCCCccc
Q 044639 41 FRILSKLVFVL---FLPCLILNHLVSSI-SL--KNFILWWF-IPVNVVVSTALGAVLGYSVTLICQPPPQFF 105 (430)
Q Consensus 41 ~k~ls~lv~~v---f~PcLiFskla~si-t~--~~i~~lw~-ipl~~~l~~~iG~~~g~lv~~i~~~P~~~~ 105 (430)
-+.++++-.+. ..+=|+|..+...+ +. ++.+.++. .-..+++++.++..+|+++..++++.....
T Consensus 32 l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~~ 103 (405)
T d2nwwa1 32 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIH 103 (405)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34455555443 34668888887777 33 34445543 344457888999999999999999877543
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.25 E-value=1.8e+02 Score=16.54 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=8.8
Q ss_pred HHHHHHhhcchhh
Q 044639 285 SLFAILIGIIPGL 297 (430)
Q Consensus 285 ~ilgiii~~IP~l 297 (430)
.+++++|+++|-+
T Consensus 8 v~valvial~pg~ 20 (31)
T d1jb0m_ 8 VYVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567777777754
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.64 E-value=1.1e+03 Score=18.19 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHhhHHhh
Q 044639 10 NAVLPLLKLLSIAVIGSLIA 29 (430)
Q Consensus 10 ~a~~Pvlkv~~i~~~G~~lA 29 (430)
--+.|-+=+.+++.+||++=
T Consensus 7 n~~~P~~~~~~l~~~~f~lp 26 (260)
T d1oedc_ 7 NFITPCVLISFLASLAFYLP 26 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHeeeC
Confidence 34678888999999999985
No 8
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.62 E-value=2.1e+02 Score=19.39 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=12.9
Q ss_pred CCChhhhhhhcchh
Q 044639 35 FVPKETFRILSKLV 48 (430)
Q Consensus 35 il~~~~~k~ls~lv 48 (430)
+|++|.+|+++.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999999876
No 9
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=2.45 E-value=3.7e+02 Score=19.39 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.1
Q ss_pred CCcccceeeEEEecCCcCChhHH
Q 044639 101 PPQFFRFTIIMTAFGNTGYIPLS 123 (430)
Q Consensus 101 P~~~~~~il~~~~fgN~~~LPia 123 (430)
|++.+|.++.-.+.+-+|-==+|
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 88999999988888888876554
No 10
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.34 E-value=1.2e+03 Score=17.72 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=19.4
Q ss_pred hhhhHHHHHhhhhc-cccccchhhhHHHHHHHHHHHHHHHHHH
Q 044639 51 LFLPCLILNHLVSS-ISLKNFILWWFIPVNVVVSTALGAVLGY 92 (430)
Q Consensus 51 vf~PcLiFskla~s-it~~~i~~lw~ipl~~~l~~~iG~~~g~ 92 (430)
++.|-+ ..++..+ ++.+|...++.+.+..+..+++..++.+
T Consensus 33 ~~~~~~-~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~ 74 (319)
T d3b60a2 33 TFMLSL-LKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSY 74 (319)
T ss_dssp HHHHHH-HTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344433 3344433 3555666665555555444444444443
Done!