BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044640
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 32.7 bits (73), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 7   VNLTEFPQIS---GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKL 63
           V L +FP  +    +++   +    + E+P + +    L  LT++R   L+ +  SI  L
Sbjct: 91  VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASL 149

Query: 64  KSLIWLSVHGCLNLESFPESLEKM----EHLNQINL 95
             L  LS+  C  L   PE L       EH   +NL
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185



 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 27  TAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEK 86
           TA+   P        L  L +  C+ L  +   I +L  L  L + GC+NL   P  + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 87  M 87
           +
Sbjct: 300 L 300


>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
           Asp172) From Plasmodium Vivax In Complex With
           Mt-Coformycin
          Length = 370

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 221 VGFPDDNHHTTVSFEFLSRVDKVKCYGV-CPVYANPNETKPNTFTLNFATQVWKLDDMAS 279
           VGF    H   +  E+    D V+  GV   V+A  + T PN  TL  A QV K++ +  
Sbjct: 194 VGFDHGGHEVDLK-EYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVERIGH 252

Query: 280 ASGTSDEEEL 289
               ++ +EL
Sbjct: 253 GIRVAESQEL 262


>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
           Vivax In Complex With Mt-Coformycin
          Length = 371

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 221 VGFPDDNHHTTVSFEFLSRVDKVKCYGV-CPVYANPNETKPNTFTLNFATQVWKLDDMAS 279
           VGF    H   +  E+    D V+  GV   V+A  + T PN  TL  A QV K++ +  
Sbjct: 195 VGFDHGGHEVDLK-EYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVERIGH 253

Query: 280 ASGTSDEEEL 289
               ++ +EL
Sbjct: 254 GIRVAESQEL 263


>pdb|2PGF|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
           Vivax In Complex With Adenosine
 pdb|2PGR|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
           Vivax In Complex With Pentostatin
 pdb|2QVN|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
           Vivax In Complex With Guanosine
          Length = 371

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 221 VGFPDDNHHTTVSFEFLSRVDKVKCYGV-CPVYANPNETKPNTFTLNFATQVWKLDDMAS 279
           VGF    H   +  E+    D V+  GV   V+A  + T PN  TL  A QV K++ +  
Sbjct: 203 VGFDHGGHEVDLK-EYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVERIGH 261

Query: 280 ASGTSDEEEL 289
               ++ +EL
Sbjct: 262 GIRVAESQEL 271


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 31  EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEK 86
           E+P  I  L NL +L +S  +    +   +   +SLIWL ++  L   + P ++ K
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 27.7 bits (60), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 31  EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEK 86
           E+P  I  L NL +L +S  +    +   +   +SLIWL ++  L   + P ++ K
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,873,547
Number of Sequences: 62578
Number of extensions: 330188
Number of successful extensions: 799
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 15
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)