Query 044640
Match_columns 305
No_of_seqs 308 out of 2399
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 8.8E-25 1.9E-29 230.6 21.1 243 1-257 830-1100(1153)
2 PLN00113 leucine-rich repeat r 99.2 1.3E-11 2.8E-16 129.3 8.0 114 2-115 124-239 (968)
3 PLN00113 leucine-rich repeat r 99.2 1.2E-11 2.6E-16 129.5 6.7 114 1-114 145-262 (968)
4 KOG0617 Ras suppressor protein 99.1 2.7E-12 5.8E-17 105.3 -2.3 112 1-115 38-153 (264)
5 PLN03210 Resistant to P. syrin 99.0 1.4E-09 3E-14 115.8 8.6 109 1-114 709-871 (1153)
6 KOG0444 Cytoskeletal regulator 98.9 9.7E-11 2.1E-15 112.5 -1.5 73 1-75 108-184 (1255)
7 KOG0617 Ras suppressor protein 98.8 5E-10 1.1E-14 92.1 -0.7 130 8-141 22-156 (264)
8 KOG0444 Cytoskeletal regulator 98.8 4E-10 8.6E-15 108.4 -2.6 101 1-103 131-260 (1255)
9 KOG0472 Leucine-rich repeat pr 98.8 5.1E-10 1.1E-14 102.6 -2.8 100 8-111 194-297 (565)
10 PLN03150 hypothetical protein; 98.7 9E-09 2E-13 102.9 5.1 92 19-110 420-512 (623)
11 PLN03150 hypothetical protein; 98.6 4.7E-08 1E-12 97.8 5.8 99 1-99 423-526 (623)
12 PRK15387 E3 ubiquitin-protein 98.6 1.6E-07 3.4E-12 95.1 8.1 57 1-59 287-360 (788)
13 KOG0472 Leucine-rich repeat pr 98.5 1.7E-08 3.8E-13 92.7 -1.1 92 8-101 423-541 (565)
14 PRK15370 E3 ubiquitin-protein 98.4 2.7E-07 5.9E-12 93.6 6.0 98 1-108 204-302 (754)
15 PRK15387 E3 ubiquitin-protein 98.4 2.2E-07 4.8E-12 94.1 4.7 133 2-155 328-460 (788)
16 KOG0532 Leucine-rich repeat (L 98.4 1.1E-08 2.4E-13 97.5 -4.5 106 2-112 81-189 (722)
17 PF14580 LRR_9: Leucine-rich r 98.4 2.1E-07 4.5E-12 78.1 3.3 104 18-127 20-125 (175)
18 KOG0532 Leucine-rich repeat (L 98.4 3.6E-08 7.8E-13 94.1 -1.9 155 1-162 126-294 (722)
19 PRK15370 E3 ubiquitin-protein 98.3 5.9E-07 1.3E-11 91.2 6.0 99 1-109 183-282 (754)
20 KOG1259 Nischarin, modulator o 98.3 6.3E-08 1.4E-12 86.2 -0.9 109 1-114 289-401 (490)
21 PF14580 LRR_9: Leucine-rich r 98.3 2.7E-07 5.9E-12 77.3 2.8 99 1-103 24-128 (175)
22 PF13855 LRR_8: Leucine rich r 98.3 6.8E-07 1.5E-11 61.5 3.4 56 18-74 2-59 (61)
23 KOG4194 Membrane glycoprotein 98.3 1.8E-07 3.9E-12 89.8 0.1 93 18-111 318-439 (873)
24 PRK15386 type III secretion pr 98.2 1.3E-06 2.8E-11 82.1 4.7 56 1-59 57-113 (426)
25 KOG4658 Apoptotic ATPase [Sign 98.2 4.5E-07 9.8E-12 93.4 0.9 78 18-96 572-650 (889)
26 PF13855 LRR_8: Leucine rich r 98.2 2.9E-06 6.3E-11 58.3 4.4 60 40-100 1-61 (61)
27 KOG4194 Membrane glycoprotein 98.1 2.1E-06 4.5E-11 82.6 3.3 133 8-144 113-252 (873)
28 KOG0618 Serine/threonine phosp 98.0 5.2E-07 1.1E-11 90.5 -2.3 90 18-110 46-135 (1081)
29 KOG4237 Extracellular matrix p 98.0 5.4E-07 1.2E-11 82.9 -2.5 97 7-103 56-155 (498)
30 KOG0618 Serine/threonine phosp 97.9 1.5E-06 3.3E-11 87.3 -0.8 95 1-98 50-147 (1081)
31 KOG4579 Leucine-rich repeat (L 97.9 5.9E-07 1.3E-11 71.5 -3.4 103 1-107 32-141 (177)
32 COG4886 Leucine-rich repeat (L 97.9 5.5E-06 1.2E-10 78.3 2.0 87 18-107 117-204 (394)
33 KOG4658 Apoptotic ATPase [Sign 97.9 5.1E-06 1.1E-10 85.8 1.9 81 18-99 546-629 (889)
34 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 51.2 3.2 40 18-58 2-41 (44)
35 PRK15386 type III secretion pr 97.9 1.4E-05 3.1E-10 75.2 4.5 55 1-61 77-135 (426)
36 COG4886 Leucine-rich repeat (L 97.7 1.5E-05 3.3E-10 75.3 2.2 110 2-115 122-235 (394)
37 cd00116 LRR_RI Leucine-rich re 97.6 2.7E-05 5.9E-10 70.9 2.7 102 1-102 86-207 (319)
38 KOG1259 Nischarin, modulator o 97.6 1.2E-05 2.6E-10 71.9 -0.2 83 18-103 285-367 (490)
39 KOG4237 Extracellular matrix p 97.5 4.8E-06 1E-10 76.7 -4.4 104 1-106 72-181 (498)
40 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.5E-09 46.9 2.8 38 65-103 2-39 (44)
41 cd00116 LRR_RI Leucine-rich re 97.4 4.5E-05 9.8E-10 69.4 1.1 85 18-102 82-179 (319)
42 KOG1859 Leucine-rich repeat pr 97.0 2.4E-05 5.1E-10 77.3 -6.0 82 18-103 188-269 (1096)
43 KOG4579 Leucine-rich repeat (L 97.0 4.7E-05 1E-09 60.8 -3.3 79 2-83 59-141 (177)
44 PF00560 LRR_1: Leucine Rich R 96.5 0.001 2.2E-08 35.8 0.6 21 18-38 1-21 (22)
45 KOG0531 Protein phosphatase 1, 96.4 0.0014 3.1E-08 62.5 1.9 84 16-103 94-177 (414)
46 KOG3207 Beta-tubulin folding c 96.2 0.002 4.3E-08 60.5 1.5 36 16-51 171-208 (505)
47 KOG0531 Protein phosphatase 1, 96.2 0.0012 2.7E-08 62.9 -0.1 98 1-103 100-201 (414)
48 KOG3207 Beta-tubulin folding c 96.1 0.0023 5E-08 60.1 1.1 101 1-103 177-286 (505)
49 KOG1859 Leucine-rich repeat pr 96.0 0.00038 8.3E-09 69.0 -4.3 92 18-114 165-256 (1096)
50 KOG3665 ZYG-1-like serine/thre 95.7 0.0045 9.7E-08 62.8 1.6 84 16-102 172-264 (699)
51 KOG1644 U2-associated snRNP A' 95.6 0.019 4.2E-07 48.9 4.5 83 18-103 43-128 (233)
52 KOG1644 U2-associated snRNP A' 95.1 0.035 7.6E-07 47.3 4.7 82 19-103 21-103 (233)
53 PF00560 LRR_1: Leucine Rich R 94.2 0.028 6.1E-07 30.0 1.4 19 90-109 2-20 (22)
54 KOG2739 Leucine-rich acidic nu 93.7 0.049 1.1E-06 48.0 2.6 39 63-101 64-104 (260)
55 PF13504 LRR_7: Leucine rich r 93.5 0.043 9.3E-07 27.4 1.2 16 18-33 2-17 (17)
56 KOG3665 ZYG-1-like serine/thre 92.7 0.055 1.2E-06 55.0 1.6 82 18-102 149-234 (699)
57 KOG2982 Uncharacterized conser 92.0 0.05 1.1E-06 49.2 0.3 80 18-100 72-158 (418)
58 KOG2120 SCF ubiquitin ligase, 91.9 0.0098 2.1E-07 53.6 -4.3 84 18-101 186-273 (419)
59 KOG2123 Uncharacterized conser 91.2 0.021 4.5E-07 51.1 -3.0 57 18-76 42-100 (388)
60 smart00370 LRR Leucine-rich re 90.3 0.18 3.9E-06 27.9 1.4 20 17-36 2-21 (26)
61 smart00369 LRR_TYP Leucine-ric 90.3 0.18 3.9E-06 27.9 1.4 20 17-36 2-21 (26)
62 KOG2739 Leucine-rich acidic nu 88.2 0.39 8.4E-06 42.5 2.6 89 12-102 38-130 (260)
63 KOG1909 Ran GTPase-activating 86.7 0.32 6.9E-06 44.8 1.2 40 35-74 208-251 (382)
64 KOG2120 SCF ubiquitin ligase, 86.5 0.12 2.7E-06 46.7 -1.4 80 17-98 286-373 (419)
65 smart00369 LRR_TYP Leucine-ric 86.2 0.47 1E-05 26.1 1.4 20 87-107 1-20 (26)
66 smart00370 LRR Leucine-rich re 86.2 0.47 1E-05 26.1 1.4 20 87-107 1-20 (26)
67 KOG2123 Uncharacterized conser 84.7 0.065 1.4E-06 48.0 -4.0 83 17-103 19-103 (388)
68 KOG1909 Ran GTPase-activating 83.4 0.22 4.7E-06 45.9 -1.3 84 18-101 214-311 (382)
69 KOG0473 Leucine-rich repeat pr 83.1 0.031 6.8E-07 48.8 -6.5 82 18-101 43-124 (326)
70 COG5238 RNA1 Ran GTPase-activa 82.9 0.55 1.2E-05 42.2 1.0 86 18-103 31-135 (388)
71 KOG3864 Uncharacterized conser 80.4 0.22 4.7E-06 42.6 -2.3 77 18-97 102-185 (221)
72 KOG0473 Leucine-rich repeat pr 80.0 0.058 1.3E-06 47.1 -6.0 80 30-112 31-111 (326)
73 smart00364 LRR_BAC Leucine-ric 72.8 2 4.3E-05 24.0 0.9 17 18-34 3-19 (26)
74 smart00365 LRR_SD22 Leucine-ri 66.9 5.1 0.00011 22.3 1.8 17 87-103 1-17 (26)
75 KOG2982 Uncharacterized conser 58.0 5.1 0.00011 36.6 1.1 83 19-101 47-134 (418)
76 PF13306 LRR_5: Leucine rich r 57.8 34 0.00075 25.9 5.8 80 18-103 13-95 (129)
77 PF13516 LRR_6: Leucine Rich r 56.9 6 0.00013 21.1 0.9 15 88-102 2-16 (24)
78 PF13306 LRR_5: Leucine rich r 56.4 29 0.00062 26.4 5.2 74 18-97 36-112 (129)
79 smart00367 LRR_CC Leucine-rich 55.1 9 0.0002 20.9 1.5 14 40-53 2-15 (26)
80 KOG1947 Leucine rich repeat pr 45.4 4.9 0.00011 38.3 -1.1 81 18-98 215-305 (482)
81 smart00368 LRR_RI Leucine rich 44.4 17 0.00037 20.3 1.5 14 88-101 2-15 (28)
82 KOG1947 Leucine rich repeat pr 37.6 14 0.00031 35.0 0.8 78 17-94 243-327 (482)
83 KOG4341 F-box protein containi 35.7 15 0.00033 35.0 0.6 98 2-99 300-412 (483)
84 COG5238 RNA1 Ran GTPase-activa 34.1 46 0.001 30.2 3.3 88 18-110 93-204 (388)
85 PF03604 DNA_RNApol_7kD: DNA d 27.4 17 0.00037 21.3 -0.3 11 243-254 21-31 (32)
86 KOG2894 Uncharacterized conser 25.7 37 0.0008 30.4 1.2 10 295-304 143-152 (331)
87 KOG3763 mRNA export factor TAP 23.8 33 0.00071 33.9 0.7 63 18-80 219-286 (585)
88 KOG3763 mRNA export factor TAP 23.3 37 0.0008 33.6 0.9 65 38-103 216-285 (585)
89 KOG4341 F-box protein containi 21.6 38 0.00083 32.4 0.6 81 18-98 295-382 (483)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=8.8e-25 Score=230.64 Aligned_cols=243 Identities=27% Similarity=0.335 Sum_probs=165.7
Q ss_pred CeecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCccc
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~l 80 (305)
|+|++|++++.+|....+|+.|+|++|+|+++|.++..+++|+.|+|++|+++..+|..+..+++|+.|++++|..+..+
T Consensus 830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 46788888888888888899999999999999999999999999999999999999998889999999999999888765
Q ss_pred CccccCCCCCcEeeecCCCcCeeCCC----Ccccccc---------CCCCCccccCCCCCccccccCCCCcEEE-EEcCC
Q 044640 81 PESLEKMEHLNQINLGRAKITEQRPS----SFENERG---------RLGGPSIILPGSEIPEWFSNQSSGSLLT-LQMPQ 146 (305)
Q Consensus 81 P~~~~~l~~L~~L~L~~n~i~~l~P~----si~~l~~---------l~~l~~~~lpG~~iP~~f~~~~~~~~l~-i~lp~ 146 (305)
+-. ..+. ....+..|....+ |. .+.+.-+ ......+.+||.++|.||.|++.|++++ |.+|+
T Consensus 910 ~l~--~~~~-~~~~~~~n~~~~~-p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~ 985 (1153)
T PLN03210 910 SWN--GSPS-EVAMATDNIHSKL-PSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLH 985 (1153)
T ss_pred cCC--CCch-hhhhhcccccccC-CchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCC
Confidence 421 1110 1111112211111 21 1111000 0123456899999999999999999998 99988
Q ss_pred C-CCCCccceeEEEEeecCCCC--CCCceeEEEEEEeeCCCCccceeEEEEecCceeCCCCCCCCCeEEEeEecCCCCCC
Q 044640 147 H-CRQTLVGFAFCAVLVSCDSE--RSGFDVDFRYSFETKTLGRRKRGRRCCFEEGWVGGYQVTKTDHVVLGFSPCGKVGF 223 (305)
Q Consensus 147 ~-~~~~~~gf~~c~v~~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdHl~l~y~~~~~~~~ 223 (305)
+ ..+.+.||++|+|+++.... ...+.+.|.|+|+++.|. .+........|.. ...++|++++- .+. ..
T Consensus 986 ~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~---~~~~~~~~~~~~~---~~~~~~l~~~~-~~~--~~ 1056 (1153)
T PLN03210 986 ISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGN---HFDSPYQPHVFSV---TKKGSHLVIFD-CCF--PL 1056 (1153)
T ss_pred cccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCC---ccccCCCceeEee---eccccceEEec-ccc--cc
Confidence 7 66789999999999887654 347789999999988776 2211110001111 12355665532 221 11
Q ss_pred CC------CCCccEEEEEEEeeCC-----cEeeeeeEEEEeCCCC
Q 044640 224 PD------DNHHTTVSFEFLSRVD-----KVKCYGVCPVYANPNE 257 (305)
Q Consensus 224 ~~------~~~~~~~sfef~~~~~-----vk~C~Gv~liy~~d~~ 257 (305)
.. +..+++|+++|..... ||+| |||++|+++..
T Consensus 1057 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~c-g~~~~~~~~~~ 1100 (1153)
T PLN03210 1057 NEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGC-GIRLSEDDSSL 1100 (1153)
T ss_pred cccccchhccCCceeeEEEEEecCCCCeEEEee-eEEEeccCCCc
Confidence 11 1246777777765442 8999 99999977544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.24 E-value=1.3e-11 Score=129.32 Aligned_cols=114 Identities=21% Similarity=0.326 Sum_probs=71.3
Q ss_pred eecCCCCCcccCC-CcCCccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQ-ISGNIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~-~~~~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+|++|...+.+|. .+.+|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++++++|++|++++|...+.
T Consensus 124 ~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 124 NLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred ECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc
Confidence 4444433334443 2235666666666665 5666777777777777777655566777777777777777777666666
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
+|..++++++|+.|+|++|.+.+..|..++++.+|.
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 676666677777777777666654466555554443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.22 E-value=1.2e-11 Score=129.49 Aligned_cols=114 Identities=25% Similarity=0.358 Sum_probs=80.5
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++|.....+|..++ +|+.|+|++|.+. .+|.+++++++|++|+|++|+....+|..++++++|+.|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 46777755556676543 6777888888776 6777788888888888887766667777777777777777777766
Q ss_pred CcccCccccCCCCCcEeeecCCCcCeeCCCCccccccC
Q 044640 77 LESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 77 l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l 114 (305)
...+|..++.+++|++|++++|.+.+..|..++.+.+|
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 66777777777777777777777665546655554443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=2.7e-12 Score=105.29 Aligned_cols=112 Identities=25% Similarity=0.313 Sum_probs=83.4
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
|.||+| +++.+|..+. +|+.|++.+|+|+++|.+|..+.+|+.|+++- +++..+|..++.++.|+.|++..++.-
T Consensus 38 LtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 38 LTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccc
Confidence 356776 6677776554 67778888888888888888888888888886 677778888888888888888776543
Q ss_pred c-ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 78 E-SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 78 ~-~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
+ .+|..+-.|..|+.|+|+.|.++-+ |..++++.++.
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lq 153 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQ 153 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccC-Chhhhhhccee
Confidence 3 5676666677777777777777776 77777766554
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.96 E-value=1.4e-09 Score=115.84 Aligned_cols=109 Identities=41% Similarity=0.619 Sum_probs=64.7
Q ss_pred CeecCCCCCcccCCCcCCccEEEEecCCCcccCc----------------------------------------------
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFETAIEEVPS---------------------------------------------- 34 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~---------------------------------------------- 34 (305)
|+|++|+.++.+|....+|+.|+|++|.|+++|.
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 4677787777777776677777777776665554
Q ss_pred --------cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecCCCcCeeCCC
Q 044640 35 --------SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 35 --------si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
+++++++|+.|++++|+.++.+|..+ ++++|+.|++++|..+..+|.. ..+|+.|+|++|.++.+ |.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~i-P~ 863 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEV-PW 863 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccC-hH
Confidence 44444455555555555555555443 4455555555555555444433 24566677777777776 76
Q ss_pred CccccccC
Q 044640 107 SFENERGR 114 (305)
Q Consensus 107 si~~l~~l 114 (305)
++..+++|
T Consensus 864 si~~l~~L 871 (1153)
T PLN03210 864 WIEKFSNL 871 (1153)
T ss_pred HHhcCCCC
Confidence 66655444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.93 E-value=9.7e-11 Score=112.47 Aligned_cols=73 Identities=32% Similarity=0.377 Sum_probs=57.7
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccc-cCCCCCCEEecccccccccccccccccccccEEEEEecC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSI-ECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si-~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~ 75 (305)
||||+| +|++.|..+. ++-.|+|++|+|+.||.++ -+|+-|-.|||++ +++..+|+.+..|..|++|.|++|.
T Consensus 108 lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 108 LDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCCh
Confidence 578887 7888887765 6677888888888888775 5788888888887 6788888888888888888888754
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.82 E-value=5e-10 Score=92.06 Aligned_cols=130 Identities=23% Similarity=0.291 Sum_probs=99.2
Q ss_pred CCcccCCCcC--CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCcccc
Q 044640 8 NLTEFPQISG--NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLE 85 (305)
Q Consensus 8 ~l~~~P~~~~--~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~ 85 (305)
...++|..+. +++.|.|+.|.++.+|+.|..|.+|+.|++++ +.++.+|..|..|+.|+.|+++- +.+..+|..+|
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccC
Confidence 3445555443 78889999999999999999999999999998 67999999999999999999987 68889999999
Q ss_pred CCCCCcEeeecCCCcCee-CCCCccccccCC--CCCccccCCCCCccccccCCCCcEEE
Q 044640 86 KMEHLNQINLGRAKITEQ-RPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLT 141 (305)
Q Consensus 86 ~l~~L~~L~L~~n~i~~l-~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~ 141 (305)
.++.|+.|||.+|++.+- .|..+..++.+. .+..+.+. -+|..+...+..+.+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILS 156 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEe
Confidence 999999999999988753 266665544332 23333331 2566565544444433
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.79 E-value=4e-10 Score=108.36 Aligned_cols=101 Identities=30% Similarity=0.372 Sum_probs=65.0
Q ss_pred CeecCCCCCcccCCCcC----CccEEEEecCCCcccCccccCCCCCCEEecccccc------------------------
Q 044640 1 IDFSSCVNLTEFPQISG----NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTR------------------------ 52 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~----~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~------------------------ 52 (305)
|+||+| ++..+|..+. .|-+|+|++|.++.+|+-+..|..|+.|.|++|..
T Consensus 131 LNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 567776 7777776553 45567788887777777777777777777776421
Q ss_pred -cccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecCCCcCee
Q 044640 53 -LKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 53 -l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
+..+|.++-.|.+|..++++. +.+..+|+.+-++.+|+.|+|++|.|+++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeee
Confidence 123455555666666666664 45556666666666666666666655554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.76 E-value=5.1e-10 Score=102.63 Aligned_cols=100 Identities=22% Similarity=0.368 Sum_probs=74.2
Q ss_pred CCcccCCCcCC---ccEEEEecCCCcccCccccCCCCCCEEeccccccccccccccc-ccccccEEEEEecCCCcccCcc
Q 044640 8 NLTEFPQISGN---IKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSIC-KLKSLIWLSVHGCLNLESFPES 83 (305)
Q Consensus 8 ~l~~~P~~~~~---L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~-~l~~L~~L~l~~c~~l~~lP~~ 83 (305)
.++.+|+.++. |..|||..|.|..+| +|+.++.|+.|.++. +.+..+|..++ ++++|.+||+.. ++++++|+.
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchH
Confidence 34555555542 333556666666666 555666666666655 45666776665 789999999999 589999999
Q ss_pred ccCCCCCcEeeecCCCcCeeCCCCcccc
Q 044640 84 LEKMEHLNQINLGRAKITEQRPSSFENE 111 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~~l~P~si~~l 111 (305)
+..+.+|++||+++|.|+++ |.+++++
T Consensus 271 ~clLrsL~rLDlSNN~is~L-p~sLgnl 297 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSL-PYSLGNL 297 (565)
T ss_pred HHHhhhhhhhcccCCccccC-Ccccccc
Confidence 99999999999999999999 9888876
No 10
>PLN03150 hypothetical protein; Provisional
Probab=98.74 E-value=9e-09 Score=102.90 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=84.4
Q ss_pred ccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 19 IKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 19 L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
++.|+|++|.+. .+|..|+.+++|+.|+|++|+..+.+|..++.+++|+.|++++|...+.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 677999999998 8999999999999999999877779999999999999999999988889999999999999999999
Q ss_pred CCcCeeCCCCccc
Q 044640 98 AKITEQRPSSFEN 110 (305)
Q Consensus 98 n~i~~l~P~si~~ 110 (305)
|.+.+.+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 9999877877654
No 11
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=4.7e-08 Score=97.77 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=84.2
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++|..-..+|..+. +|+.|+|++|.+. .+|.+++.+++|+.|+|++|+..+.+|..+++|++|+.|++++|..
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 46777755567776554 7899999999998 8999999999999999999888889999999999999999999998
Q ss_pred CcccCccccCC-CCCcEeeecCCC
Q 044640 77 LESFPESLEKM-EHLNQINLGRAK 99 (305)
Q Consensus 77 l~~lP~~~~~l-~~L~~L~L~~n~ 99 (305)
.+.+|..++.+ .++..+++.+|.
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccCChHHhhccccCceEEecCCc
Confidence 88999887753 456777887775
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.56 E-value=1.6e-07 Score=95.13 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=31.5
Q ss_pred CeecCCCCCcccCCCcCCccEEEEecCCCcccCccccC-----------------CCCCCEEeccccccccccccc
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIEC-----------------LTNLTLLTISRCTRLKRVSTS 59 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~-----------------L~~L~~L~L~~c~~l~~lP~~ 59 (305)
|+|++| +++.+|....+|+.|+|++|.|+.+|..... ..+|+.|+|++ +.+..+|..
T Consensus 287 L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~l 360 (788)
T PRK15387 287 LWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTL 360 (788)
T ss_pred EECcCC-ccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCCC
Confidence 345566 5556666556666666666655554431111 13577777777 455566653
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.48 E-value=1.7e-08 Score=92.74 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=65.9
Q ss_pred CCcccCCCc---CCccEEEEecCCCcccCccccCCCCCCEEeccccccccccccc------------------------c
Q 044640 8 NLTEFPQIS---GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTS------------------------I 60 (305)
Q Consensus 8 ~l~~~P~~~---~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~------------------------i 60 (305)
.+.-+|..+ .+|..|+|++|-+..+|..++.+..|+.|+++.| ++..+|.. +
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHh
Confidence 454555444 3788899999999999999999999999999984 55555443 5
Q ss_pred cccccccEEEEEecCCCcccCccccCCCCCcEeeecCCCcC
Q 044640 61 CKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKIT 101 (305)
Q Consensus 61 ~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~ 101 (305)
.+|.+|.+|++.+ +.++.+|..+|+|.+|++|.+++|+|+
T Consensus 502 ~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 5566666677665 456667777777777777777777666
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.43 E-value=2.7e-07 Score=93.56 Aligned_cols=98 Identities=21% Similarity=0.399 Sum_probs=71.1
Q ss_pred CeecCCCCCcccCCCc-CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 1 IDFSSCVNLTEFPQIS-GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~-~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
|+|++| +++.+|..+ .+|+.|+|++|.|+.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++| .+..
T Consensus 204 L~Ls~N-~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~ 276 (754)
T PRK15370 204 LILDNN-ELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISC 276 (754)
T ss_pred EEecCC-CCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCc
Confidence 567787 778888655 388888888888888887664 36888888885 4667777653 57888888764 5667
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
+|..+. .+|+.|++++|+++.+ |..+
T Consensus 277 LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l 302 (754)
T PRK15370 277 LPENLP--EELRYLSVYDNSIRTL-PAHL 302 (754)
T ss_pred cccccC--CCCcEEECCCCccccC-cccc
Confidence 776553 4788888888888776 6543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=2.2e-07 Score=94.10 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=88.5
Q ss_pred eecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccC
Q 044640 2 DFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFP 81 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP 81 (305)
++++| .++.+|....+|+.|+|++|.|+.+|... .+|+.|++++ +.+..+|..+ .+|+.|++++| .+..+|
T Consensus 328 ~Ls~N-~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~-N~L~~LP~l~---~~L~~LdLs~N-~Lt~LP 398 (788)
T PRK15387 328 WAYNN-QLTSLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYN-NRLTSLPALP---SGLKELIVSGN-RLTSLP 398 (788)
T ss_pred ccccC-ccccccccccccceEecCCCccCCCCCCC---cccceehhhc-cccccCcccc---cccceEEecCC-cccCCC
Confidence 44555 55666665567889999999999888643 4677788887 4677788653 57889999885 566777
Q ss_pred ccccCCCCCcEeeecCCCcCeeCCCCccccccCCCCCccccCCCCCccccccCCCCcEEEEEcCCCCCCCccce
Q 044640 82 ESLEKMEHLNQINLGRAKITEQRPSSFENERGRLGGPSIILPGSEIPEWFSNQSSGSLLTLQMPQHCRQTLVGF 155 (305)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~~l~~~~lpG~~iP~~f~~~~~~~~l~i~lp~~~~~~~~gf 155 (305)
..+ .+|+.|++++|.++.+ |.....+..| .+..+.+. .||..|....... .++| ..|++.|.
T Consensus 399 ~l~---s~L~~LdLS~N~LssI-P~l~~~L~~L-~Ls~NqLt--~LP~sl~~L~~L~--~LdL---s~N~Ls~~ 460 (788)
T PRK15387 399 VLP---SELKELMVSGNRLTSL-PMLPSGLLSL-SVYRNQLT--RLPESLIHLSSET--TVNL---EGNPLSER 460 (788)
T ss_pred Ccc---cCCCEEEccCCcCCCC-Ccchhhhhhh-hhccCccc--ccChHHhhccCCC--eEEC---CCCCCCch
Confidence 653 5788899999999887 7654444332 44445553 5887776544333 4444 34445543
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=1.1e-08 Score=97.50 Aligned_cols=106 Identities=26% Similarity=0.490 Sum_probs=80.2
Q ss_pred eecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 2 DFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
||+.| ++.++|+... .|+.|.|..|.|..+|..+.+|..|++|+|+. +.+..+|..++.|+ |+.|.+++ ++++
T Consensus 81 DlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~ 156 (722)
T KOG0532|consen 81 DLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLT 156 (722)
T ss_pred hcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-Cccc
Confidence 34444 4455555443 45556777777778888888899999999988 56778888887776 78888877 6788
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccc
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENER 112 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~ 112 (305)
.+|+.++.+..|..|+.+.|.+..+ |+.++.|.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~ 189 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLT 189 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHH
Confidence 8888888888888888888888888 87776654
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=2.1e-07 Score=78.07 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=32.4
Q ss_pred CccEEEEecCCCcccCcccc-CCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccc-cCCCCCcEeee
Q 044640 18 NIKTLYLFETAIEEVPSSIE-CLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESL-EKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~-~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~-~~l~~L~~L~L 95 (305)
+++.|+|+||.|+.+. .++ .+.+|+.|+|++ +.+..++. +..++.|++|++++| .+..+++.+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCC-CCCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEEC
Confidence 5677888888887764 465 577888888887 45666653 566788888888874 566665444 35778888888
Q ss_pred cCCCcCeeCCCCccccccCCCCCccccCCCCC
Q 044640 96 GRAKITEQRPSSFENERGRLGGPSIILPGSEI 127 (305)
Q Consensus 96 ~~n~i~~l~P~si~~l~~l~~l~~~~lpG~~i 127 (305)
++|+|..+ ..+..+..+..+....+.|+.|
T Consensus 96 ~~N~I~~l--~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDL--NELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SC--CCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCCh--HHhHHHHcCCCcceeeccCCcc
Confidence 88888765 2344443333344444445444
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=3.6e-08 Score=94.13 Aligned_cols=155 Identities=25% Similarity=0.326 Sum_probs=89.0
Q ss_pred CeecCCCCCcccCCCcC--CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQISG--NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~--~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|||+-| ++..+|..+. -|+.|-+++|+++.+|..|+.+.+|..|+.+. +.+.++|..++.+.+|+.|++..| .+.
T Consensus 126 l~ls~N-qlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn-~l~ 202 (722)
T KOG0532|consen 126 LDLSSN-QLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRN-HLE 202 (722)
T ss_pred hhhccc-hhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhh-hhh
Confidence 345554 5666666655 46677777777777777777777777777776 456667776777766666666653 445
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC-----------CCCccccCCC-CCccccccCCCCcEEEEEcCC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL-----------GGPSIILPGS-EIPEWFSNQSSGSLLTLQMPQ 146 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~-----------~l~~~~lpG~-~iP~~f~~~~~~~~l~i~lp~ 146 (305)
.+|+.+..| .|..||++.|++..+ |-.|.+++.|. .-..+|.-|. .|=.|+.-|+..+-..++++.
T Consensus 203 ~lp~El~~L-pLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q~~~a~~~~t 280 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQSGGALDLYT 280 (722)
T ss_pred hCCHHHhCC-ceeeeecccCceeec-chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhccccCCccccc
Confidence 556555532 466666666666666 66666554433 1223444443 344555555552222233322
Q ss_pred CCCCCccceeEEEEee
Q 044640 147 HCRQTLVGFAFCAVLV 162 (305)
Q Consensus 147 ~~~~~~~gf~~c~v~~ 162 (305)
. ..-.+|..|-+-.
T Consensus 281 ~--~RP~~~~~c~~ed 294 (722)
T KOG0532|consen 281 T--LRPRHFSSCHVED 294 (722)
T ss_pred c--cCCcccCCcchhh
Confidence 1 1124565666543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=5.9e-07 Score=91.19 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=78.7
Q ss_pred CeecCCCCCcccCCCc-CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 1 IDFSSCVNLTEFPQIS-GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~-~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
|+|+++ .++.+|..+ .+|+.|+|++|.|+.+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++|. +..
T Consensus 183 L~L~~~-~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~-L~~ 255 (754)
T PRK15370 183 LRLKIL-GLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR-ITE 255 (754)
T ss_pred EEeCCC-CcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc-cCc
Confidence 456665 788899755 489999999999999998775 58999999985 5778887653 579999999965 568
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCCcc
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSSFE 109 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~si~ 109 (305)
+|..+. .+|+.|++++|+++.+ |..+.
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~~L-P~~l~ 282 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKISCL-PENLP 282 (754)
T ss_pred CChhHh--CCCCEEECcCCccCcc-ccccC
Confidence 887654 5799999999999987 76553
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=6.3e-08 Score=86.18 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=55.0
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
||||+| .++.|-+... .++.|+++.|.|..+-. +..|.+|+.|||++ +.+..+-.+-.+|-++++|.+++ +.+
T Consensus 289 lDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~i 364 (490)
T KOG1259|consen 289 LDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKI 364 (490)
T ss_pred cccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhH
Confidence 345554 4444443322 45555555555555544 55555555555555 33444433333444555555555 244
Q ss_pred cccCccccCCCCCcEeeecCCCcCeeC-CCCccccccC
Q 044640 78 ESFPESLEKMEHLNQINLGRAKITEQR-PSSFENERGR 114 (305)
Q Consensus 78 ~~lP~~~~~l~~L~~L~L~~n~i~~l~-P~si~~l~~l 114 (305)
+.+. .++.+-+|..||+.+|+|..+. -.+|++++-|
T Consensus 365 E~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 365 ETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhhh-hhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 4443 3455666777777777776551 1245554433
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=2.7e-07 Score=77.31 Aligned_cols=99 Identities=17% Similarity=0.322 Sum_probs=41.8
Q ss_pred CeecCCCCCcccCCC---cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccc-cccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQI---SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSI-CKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~---~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i-~~l~~L~~L~l~~c~~ 76 (305)
|+|+|| .++.+... +.+|+.|+|++|.|+.++ .+..+++|+.|++++ +.+..+.+.+ ..+++|+.|++++| .
T Consensus 24 L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N-~ 99 (175)
T PF14580_consen 24 LNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNN-K 99 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS--
T ss_pred cccccc-ccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCC-c
Confidence 577887 56655432 347899999999999986 588899999999999 6788886554 36899999999985 4
Q ss_pred CcccCc--cccCCCCCcEeeecCCCcCee
Q 044640 77 LESFPE--SLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 77 l~~lP~--~~~~l~~L~~L~L~~n~i~~l 103 (305)
+..+-+ .+..+++|+.|+|.+|++...
T Consensus 100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 100 ISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp --SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCChHHhHHHHcCCCcceeeccCCcccch
Confidence 554443 356789999999999998765
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=6.8e-07 Score=61.47 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=35.1
Q ss_pred CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
+|+.|+|++|.|+.+|. .+..+++|+.|++++| .+..+|. .+.++++|+.|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 46677777777777764 4566777777777753 4444443 4556666666666665
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.26 E-value=1.8e-07 Score=89.78 Aligned_cols=93 Identities=26% Similarity=0.375 Sum_probs=63.3
Q ss_pred CccEEEEecCCCcccCc-cccCCCC------------------------CCEEeccccccccccc---ccccccccccEE
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTN------------------------LTLLTISRCTRLKRVS---TSICKLKSLIWL 69 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~------------------------L~~L~L~~c~~l~~lP---~~i~~l~~L~~L 69 (305)
+|++|+|+.|+|+++|+ ++..|+. |+.|||++|.....+- ..+..|++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 56666666666666643 3444444 4455554433222222 235678899999
Q ss_pred EEEecCCCcccC-ccccCCCCCcEeeecCCCcCeeCCCCcccc
Q 044640 70 SVHGCLNLESFP-ESLEKMEHLNQINLGRAKITEQRPSSFENE 111 (305)
Q Consensus 70 ~l~~c~~l~~lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l 111 (305)
.+.|| .++++| ..+..+.+|++|+|.+|.|..++|..+.++
T Consensus 398 ~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 398 RLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred eecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 99984 677777 467889999999999999999988877764
No 24
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=1.3e-06 Score=82.11 Aligned_cols=56 Identities=18% Similarity=0.496 Sum_probs=33.0
Q ss_pred CeecCCCCCcccCCCcCCccEEEEec-CCCcccCccccCCCCCCEEeccccccccccccc
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFE-TAIEEVPSSIECLTNLTLLTISRCTRLKRVSTS 59 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~-n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~ 59 (305)
|++++| .++.+|....+|+.|.+++ +.++.+|..+. .+|+.|++++|..+..+|..
T Consensus 57 L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 57 LYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred EEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 456666 6666665555666666665 34555565442 46666666666556555543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.18 E-value=4.5e-07 Score=93.43 Aligned_cols=78 Identities=29% Similarity=0.436 Sum_probs=40.0
Q ss_pred CccEEEEecC-CCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeec
Q 044640 18 NIKTLYLFET-AIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLG 96 (305)
Q Consensus 18 ~L~~L~L~~n-~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~ 96 (305)
.|+.|||++| .+.++|++|+.|-+|++|++++ ..+..+|..+++|+.|.+|++..+..+..+|.....|.+|++|.+-
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 4445555543 3345555555555555555555 3444555555555555555555555554454444445555555443
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=2.9e-06 Score=58.28 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=49.5
Q ss_pred CCCCEEecccccccccccc-cccccccccEEEEEecCCCcccCccccCCCCCcEeeecCCCc
Q 044640 40 TNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKI 100 (305)
Q Consensus 40 ~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i 100 (305)
++|+.|++++| .+..+|. .+..+++|++|++++|....--|..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999996 7888885 678899999999998655444446889999999999999875
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.09 E-value=2.1e-06 Score=82.65 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCcccCCCc---CCccEEEEecCCCcccC-ccccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCCcccCc
Q 044640 8 NLTEFPQIS---GNIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNLESFPE 82 (305)
Q Consensus 8 ~l~~~P~~~---~~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l~~lP~ 82 (305)
.|+.+|... ++|+.|+|..|.|.++- +.+..+..|+.|||+. +.+..+|.. +-.-.++++|+|++|....-=-.
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 344455432 24555555555555443 2355555566666665 344444432 22224677777777543332234
Q ss_pred cccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEEEc
Q 044640 83 SLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTLQM 144 (305)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~l 144 (305)
.|..+.+|..|.|+.|.++.+-+.+++++..|. .+..+.+ +|-+|...|...+.-.++|
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i---rive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI---RIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccce---eeehhhhhcCchhhhhhhh
Confidence 566677788888888888887223455455443 2222222 4556776666665555555
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.02 E-value=5.2e-07 Score=90.52 Aligned_cols=90 Identities=26% Similarity=0.445 Sum_probs=61.4
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
+|+.|+|++|.+...|..|..+.+|+.|+++. +.+..+|.++.++.+|++|+|.+ +.+..+|..+..+.+|+.|+++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccch
Confidence 46667777777777777777777777777765 56666776666777777777765 56667777777777777777777
Q ss_pred CCcCeeCCCCccc
Q 044640 98 AKITEQRPSSFEN 110 (305)
Q Consensus 98 n~i~~l~P~si~~ 110 (305)
|.+... |..|..
T Consensus 124 N~f~~~-Pl~i~~ 135 (1081)
T KOG0618|consen 124 NHFGPI-PLVIEV 135 (1081)
T ss_pred hccCCC-chhHHh
Confidence 766665 654433
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.99 E-value=5.4e-07 Score=82.85 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=82.1
Q ss_pred CCCcccCCCcC-CccEEEEecCCCcccCcc-ccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCc-c
Q 044640 7 VNLTEFPQISG-NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPE-S 83 (305)
Q Consensus 7 ~~l~~~P~~~~-~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~-~ 83 (305)
+.|+++|..+. +...++|+.|.|+.||+. ++.+++|+.|||++|+....-|..+.+|.+|..|-+.++++++.+|. .
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 56889998876 788899999999999874 79999999999999665555688899999999999999889999984 5
Q ss_pred ccCCCCCcEeeecCCCcCee
Q 044640 84 LEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~~l 103 (305)
|+.+.+|+.|.+.-|.+..+
T Consensus 136 F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred hhhHHHHHHHhcChhhhcch
Confidence 77888888888777777665
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.93 E-value=1.5e-06 Score=87.26 Aligned_cols=95 Identities=25% Similarity=0.412 Sum_probs=84.5
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
|||+++ .+..||..++ +|+.|+++.|.|.++|.++.++.+|++|+|.+ +.+..+|.++..+++|++|++++ +.+
T Consensus 50 l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~-N~f 126 (1081)
T KOG0618|consen 50 LDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSF-NHF 126 (1081)
T ss_pred eecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccch-hcc
Confidence 578887 8889998776 78889999999999999999999999999997 78999999999999999999999 578
Q ss_pred cccCccccCCCCCcEeeecCC
Q 044640 78 ESFPESLEKMEHLNQINLGRA 98 (305)
Q Consensus 78 ~~lP~~~~~l~~L~~L~L~~n 98 (305)
..+|..+..+..+..+..++|
T Consensus 127 ~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 127 GPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred CCCchhHHhhhHHHHHhhhcc
Confidence 889998888888888888888
No 31
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=5.9e-07 Score=71.46 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=78.5
Q ss_pred CeecCCCCCcccCCCcC------CccEEEEecCCCcccCccccC-CCCCCEEecccccccccccccccccccccEEEEEe
Q 044640 1 IDFSSCVNLTEFPQISG------NIKTLYLFETAIEEVPSSIEC-LTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHG 73 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~------~L~~L~L~~n~i~~lP~si~~-L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~ 73 (305)
|+|+.| .+..+++... .|+..+|++|.++.+|+.+.. .+.++.|+|++ +.+..+|..+..|+.|+.|+++.
T Consensus 32 ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 467777 5555555432 466688999999988888754 45788889988 67888888888889999999988
Q ss_pred cCCCcccCccccCCCCCcEeeecCCCcCeeCCCC
Q 044640 74 CLNLESFPESLEKMEHLNQINLGRAKITEQRPSS 107 (305)
Q Consensus 74 c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~s 107 (305)
+.+..+|..+-.+.+|.+|+..+|.+.++ |-.
T Consensus 110 -N~l~~~p~vi~~L~~l~~Lds~~na~~ei-d~d 141 (177)
T KOG4579|consen 110 -NPLNAEPRVIAPLIKLDMLDSPENARAEI-DVD 141 (177)
T ss_pred -CccccchHHHHHHHhHHHhcCCCCccccC-cHH
Confidence 46777787777788888888888888777 543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.88 E-value=5.5e-06 Score=78.28 Aligned_cols=87 Identities=26% Similarity=0.456 Sum_probs=54.5
Q ss_pred CccEEEEecCCCcccCccccCCC-CCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeec
Q 044640 18 NIKTLYLFETAIEEVPSSIECLT-NLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLG 96 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~-~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~ 96 (305)
.++.|++.++.+.++|..+..+. +|+.|++++ +.+..+|..++.++.|+.|+++.| .+..+|...+.+..|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheecc
Confidence 45566666666666666666664 666666666 456666555666666666666663 455566555456666666666
Q ss_pred CCCcCeeCCCC
Q 044640 97 RAKITEQRPSS 107 (305)
Q Consensus 97 ~n~i~~l~P~s 107 (305)
+|.+..+ |..
T Consensus 195 ~N~i~~l-~~~ 204 (394)
T COG4886 195 GNKISDL-PPE 204 (394)
T ss_pred CCccccC-chh
Confidence 6666666 554
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.88 E-value=5.1e-06 Score=85.77 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=44.9
Q ss_pred CccEEEEecCC--CcccCcc-ccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEee
Q 044640 18 NIKTLYLFETA--IEEVPSS-IECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~--i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~ 94 (305)
+|+.|-+.+|. +..++.. +..++.|+.|||++|..+..+|..|++|-+|++|+++++ .+..+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheec
Confidence 35555555553 4444433 455556666666655555666666666666666666553 3445566666666666666
Q ss_pred ecCCC
Q 044640 95 LGRAK 99 (305)
Q Consensus 95 L~~n~ 99 (305)
+..+.
T Consensus 625 l~~~~ 629 (889)
T KOG4658|consen 625 LEVTG 629 (889)
T ss_pred ccccc
Confidence 55544
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.4e-05 Score=51.20 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=31.6
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccc
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVST 58 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~ 58 (305)
+|++|+|++|+|+.+|..+++|++|+.|++++| .+..+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 688999999999999988999999999999985 5555543
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=1.4e-05 Score=75.17 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=40.2
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecC-CCcccCccccCCCCCCEEeccc--cccccccccccc
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFET-AIEEVPSSIECLTNLTLLTISR--CTRLKRVSTSIC 61 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n-~i~~lP~si~~L~~L~~L~L~~--c~~l~~lP~~i~ 61 (305)
|.+++|..++.+|+.+. +|+.|++++| .+..+|.++ +.|++.. +..+..+|.++.
T Consensus 77 L~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sL------e~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 77 ITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESV------RSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred EEccCCCCcccCCchhhhhhhheEccCccccccccccc------ceEEeCCCCCcccccCcchHh
Confidence 56788999999997665 8999999998 888888764 4444443 344667776543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.72 E-value=1.5e-05 Score=75.27 Aligned_cols=110 Identities=29% Similarity=0.458 Sum_probs=88.8
Q ss_pred eecCCCCCcccCCCcC----CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 2 DFSSCVNLTEFPQISG----NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~----~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
++.++ .+.++|...+ +|+.|++++|.++.+|..++.++.|+.|++++ +.+..+|...+.++.|+.|++++ +.+
T Consensus 122 ~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i 198 (394)
T COG4886 122 DLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKI 198 (394)
T ss_pred ecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-Ccc
Confidence 34444 6667776543 68999999999999999999999999999999 57888998777889999999999 578
Q ss_pred cccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 78 ESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 78 ~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
..+|..++.+..|+.|.+++|.+... +..+..+..+.
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~ 235 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLS 235 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcceec-chhhhhccccc
Confidence 88998877777799999999976666 66666655443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.65 E-value=2.7e-05 Score=70.87 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=68.0
Q ss_pred CeecCCCCCcccCCCc------CCccEEEEecCCCc-----ccCccccCC-CCCCEEeccccccc----ccccccccccc
Q 044640 1 IDFSSCVNLTEFPQIS------GNIKTLYLFETAIE-----EVPSSIECL-TNLTLLTISRCTRL----KRVSTSICKLK 64 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~------~~L~~L~L~~n~i~-----~lP~si~~L-~~L~~L~L~~c~~l----~~lP~~i~~l~ 64 (305)
|++++|..-...+..+ .+|+.|++++|.+. .+..++..+ ++|+.|++++|... ..++..+..+.
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 4667774432233222 23889999998876 344566677 88999999987643 23455566677
Q ss_pred cccEEEEEecCCCc----ccCccccCCCCCcEeeecCCCcCe
Q 044640 65 SLIWLSVHGCLNLE----SFPESLEKMEHLNQINLGRAKITE 102 (305)
Q Consensus 65 ~L~~L~l~~c~~l~----~lP~~~~~l~~L~~L~L~~n~i~~ 102 (305)
+|++|++++|.... .++..+..+++|+.|++++|.+..
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 89999998876442 344445556789999998888764
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.61 E-value=1.2e-05 Score=71.90 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=69.9
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
.|+.|+|++|.|+++..|..-+++++.|+++.| .+..+-. +..|++|+.|++++ +.+.++-.+-..+.+++.|.|++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh
Confidence 477899999999999999999999999999994 5555544 77889999999999 46777666666778899999999
Q ss_pred CCcCee
Q 044640 98 AKITEQ 103 (305)
Q Consensus 98 n~i~~l 103 (305)
|.+..+
T Consensus 362 N~iE~L 367 (490)
T KOG1259|consen 362 NKIETL 367 (490)
T ss_pred hhHhhh
Confidence 998876
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.50 E-value=4.8e-06 Score=76.73 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=85.4
Q ss_pred CeecCCCCCcccCCCc----CCccEEEEecCCCccc-CccccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQIS----GNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~----~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|.|..| +++.+|+.. .+|+.|+|+.|+|+.| |..+..|.+|..|-+.++++++.+|. .+++|.+|+.|.+.-|
T Consensus 72 irLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 72 IRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 356666 888999754 3789999999999977 88899999999999999899999996 5778999999988876
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
..--...+.+..|++|..|.+..|.+..+ +.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i-~~ 181 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSI-CK 181 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhh-cc
Confidence 65555667788888888888888887776 54
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=0.00011 Score=46.92 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=21.2
Q ss_pred cccEEEEEecCCCcccCccccCCCCCcEeeecCCCcCee
Q 044640 65 SLIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 65 ~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
+|++|++++| .+..+|..+++|++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4556666653 3445555556666666666666666554
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.44 E-value=4.5e-05 Score=69.42 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=64.2
Q ss_pred CccEEEEecCCCc-ccCccccCCCC---CCEEeccccccc----cccccccccc-ccccEEEEEecCCC----cccCccc
Q 044640 18 NIKTLYLFETAIE-EVPSSIECLTN---LTLLTISRCTRL----KRVSTSICKL-KSLIWLSVHGCLNL----ESFPESL 84 (305)
Q Consensus 18 ~L~~L~L~~n~i~-~lP~si~~L~~---L~~L~L~~c~~l----~~lP~~i~~l-~~L~~L~l~~c~~l----~~lP~~~ 84 (305)
+|+.|++++|.+. ..+..+..+.+ |+.|++++|... ..+...+..+ ++|+.|++++|... ..++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8999999999987 45555655555 999999997543 2334455566 89999999998755 2455566
Q ss_pred cCCCCCcEeeecCCCcCe
Q 044640 85 EKMEHLNQINLGRAKITE 102 (305)
Q Consensus 85 ~~l~~L~~L~L~~n~i~~ 102 (305)
..+.+|+.|++++|.+.+
T Consensus 162 ~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 162 RANRDLKELNLANNGIGD 179 (319)
T ss_pred HhCCCcCEEECcCCCCch
Confidence 677899999999998873
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.98 E-value=2.4e-05 Score=77.28 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=57.6
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
.++.|+|+.|+++.+- .+..|++|++|||++ |.+..+|..--.-.+|+.|++++| .++++- .+.++.+|+.||+++
T Consensus 188 ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~-gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNN-ALTTLR-GIENLKSLYGLDLSY 263 (1096)
T ss_pred HhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeeccc-HHHhhh-hHHhhhhhhccchhH
Confidence 5777888888888776 678888888888888 567777752111124888888874 555553 356788888888888
Q ss_pred CCcCee
Q 044640 98 AKITEQ 103 (305)
Q Consensus 98 n~i~~l 103 (305)
|-+.+.
T Consensus 264 Nll~~h 269 (1096)
T KOG1859|consen 264 NLLSEH 269 (1096)
T ss_pred hhhhcc
Confidence 866653
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.98 E-value=4.7e-05 Score=60.79 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=66.5
Q ss_pred eecCCCCCcccCCCcC----CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 2 DFSSCVNLTEFPQISG----NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~----~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
+|++| .+++||+.+. .++.|+|++|.|.++|..+..++.|+.|+++. +.+...|.-+..|.+|-.|+..++ ..
T Consensus 59 ~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~n-a~ 135 (177)
T KOG4579|consen 59 SLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPEN-AR 135 (177)
T ss_pred ecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCCC-cc
Confidence 67887 8999998765 57889999999999999999999999999999 577788888888899999998874 45
Q ss_pred cccCcc
Q 044640 78 ESFPES 83 (305)
Q Consensus 78 ~~lP~~ 83 (305)
..+|-.
T Consensus 136 ~eid~d 141 (177)
T KOG4579|consen 136 AEIDVD 141 (177)
T ss_pred ccCcHH
Confidence 555543
No 44
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.001 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=13.8
Q ss_pred CccEEEEecCCCcccCccccC
Q 044640 18 NIKTLYLFETAIEEVPSSIEC 38 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~ 38 (305)
+|++|+|++|.|+++|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466677777777777666554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.44 E-value=0.0014 Score=62.49 Aligned_cols=84 Identities=21% Similarity=0.407 Sum_probs=65.8
Q ss_pred cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeee
Q 044640 16 SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINL 95 (305)
Q Consensus 16 ~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L 95 (305)
+.+|+.|+|.+|.|+.+...+..+.+|+.|++++ +.+..+.. +..++.|+.|++++| .+..+.. +..+.+|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheeccC-cchhccC-CccchhhhcccC
Confidence 3478889999999998887788899999999998 56666654 566777999999985 5555543 344788888899
Q ss_pred cCCCcCee
Q 044640 96 GRAKITEQ 103 (305)
Q Consensus 96 ~~n~i~~l 103 (305)
++|.+..+
T Consensus 170 ~~n~i~~i 177 (414)
T KOG0531|consen 170 SYNRIVDI 177 (414)
T ss_pred Ccchhhhh
Confidence 99888877
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.002 Score=60.50 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=17.5
Q ss_pred cCCccEEEEecCCCcccCccc--cCCCCCCEEeccccc
Q 044640 16 SGNIKTLYLFETAIEEVPSSI--ECLTNLTLLTISRCT 51 (305)
Q Consensus 16 ~~~L~~L~L~~n~i~~lP~si--~~L~~L~~L~L~~c~ 51 (305)
+.+|+.|+|+.|.+...-++. ..+++|+.|.|+.|.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCC
Confidence 345566666666554222221 244555555555553
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.18 E-value=0.0012 Score=62.90 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=73.8
Q ss_pred CeecCCCCCcccCCC---cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQI---SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~---~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
|+|.++ +++.+... +.+|++|+|++|.|+.+.. +..++.|+.|++++ +.+..+.. +..++.|+.+++++|. +
T Consensus 100 l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~l~~n~-i 174 (414)
T KOG0531|consen 100 LDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLKSLKLLDLSYNR-I 174 (414)
T ss_pred eecccc-chhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc-CcchhccC-CccchhhhcccCCcch-h
Confidence 456666 66666662 3489999999999998754 67778899999999 46666654 4558999999999964 4
Q ss_pred cccCcc-ccCCCCCcEeeecCCCcCee
Q 044640 78 ESFPES-LEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 78 ~~lP~~-~~~l~~L~~L~L~~n~i~~l 103 (305)
..+... ...+.+|+.+++.+|.+..+
T Consensus 175 ~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 175 VDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhhhhhhhhhccchHHHhccCCchhcc
Confidence 444432 46788899999999988765
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0023 Score=60.11 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=63.8
Q ss_pred CeecCCCCCcccCC-----CcCCccEEEEecCCCc--ccCccccCCCCCCEEecccccccccccccccccccccEEEEEe
Q 044640 1 IDFSSCVNLTEFPQ-----ISGNIKTLYLFETAIE--EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHG 73 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-----~~~~L~~L~L~~n~i~--~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~ 73 (305)
|+|+.| ++..+-+ .+.+|+.|.|++|+++ .+-.-...+++|+.|+|..|+.+..-......+..|+.|+|++
T Consensus 177 LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 177 LNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred cccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 456665 3433222 2347888999999887 4555556778888888888653332222223456788888888
Q ss_pred cCCCcccC--ccccCCCCCcEeeecCCCcCee
Q 044640 74 CLNLESFP--ESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 74 c~~l~~lP--~~~~~l~~L~~L~L~~n~i~~l 103 (305)
|+ +..++ ...+.++.|+.|+++.+++..+
T Consensus 256 N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 256 NN-LIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred Cc-ccccccccccccccchhhhhccccCcchh
Confidence 54 44555 3456677777777777776655
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.05 E-value=0.00038 Score=69.03 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=71.2
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
.|...+.++|++..+..++.-++.|+.|+|+.|+ +...- .+..+++|+.||++. +.+..+|..-..-..|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc
Confidence 4667888999999999999999999999999954 54444 677889999999999 46888886432223499999999
Q ss_pred CCcCeeCCCCccccccC
Q 044640 98 AKITEQRPSSFENERGR 114 (305)
Q Consensus 98 n~i~~l~P~si~~l~~l 114 (305)
|.++.+ ..|.++++|
T Consensus 242 N~l~tL--~gie~LksL 256 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSL 256 (1096)
T ss_pred cHHHhh--hhHHhhhhh
Confidence 998876 234444433
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.74 E-value=0.0045 Score=62.76 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=58.0
Q ss_pred cCCccEEEEecCCCcccCccccCCCCCCEEeccccccccccc--ccccccccccEEEEEecCCCcccC-------ccccC
Q 044640 16 SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVS--TSICKLKSLIWLSVHGCLNLESFP-------ESLEK 86 (305)
Q Consensus 16 ~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP--~~i~~l~~L~~L~l~~c~~l~~lP-------~~~~~ 86 (305)
+.||..||+++|+|+.+ ..|++|++|+.|.+.+- .+..-. ..+.+|++|+.||+|.-.. ...+ +.-..
T Consensus 172 FpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMV 248 (699)
T ss_pred cCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhcccCCCeeecccccc-ccchHHHHHHHHhccc
Confidence 34788899999999888 77889999998888773 222211 2366789999999986332 2222 12234
Q ss_pred CCCCcEeeecCCCcCe
Q 044640 87 MEHLNQINLGRAKITE 102 (305)
Q Consensus 87 l~~L~~L~L~~n~i~~ 102 (305)
++.|+.||.+++.+.+
T Consensus 249 LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINE 264 (699)
T ss_pred CccccEEecCCcchhH
Confidence 7789999999876554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.56 E-value=0.019 Score=48.88 Aligned_cols=83 Identities=14% Similarity=0.279 Sum_probs=61.3
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccc-cccccEEEEEecCCCcccCcc--ccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICK-LKSLIWLSVHGCLNLESFPES--LEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~-l~~L~~L~l~~c~~l~~lP~~--~~~l~~L~~L~ 94 (305)
+...++|++|.|..++. +.++..|.+|.+.+ +++..+-+.+.. ++.|+.|.+.+| .+..+-+. +..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 45568999999887664 77888999999998 567766655554 567999999985 45555432 34677899999
Q ss_pred ecCCCcCee
Q 044640 95 LGRAKITEQ 103 (305)
Q Consensus 95 L~~n~i~~l 103 (305)
+-+|.++..
T Consensus 120 ll~Npv~~k 128 (233)
T KOG1644|consen 120 LLGNPVEHK 128 (233)
T ss_pred ecCCchhcc
Confidence 888877654
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.13 E-value=0.035 Score=47.35 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=53.1
Q ss_pred ccEEEEecCCCcccCccccC-CCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 19 IKTLYLFETAIEEVPSSIEC-LTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 19 L~~L~L~~n~i~~lP~si~~-L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
-+.++|.+..|..+-. ++. +.....+||++ +.+..++. +-.++.|.+|.++.|....--|..-..+++|..|.|.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtd-Ndl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTD-NDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccc-cchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3457777665543322 222 33667888988 45665554 44678899999988654444444434456799999999
Q ss_pred CCcCee
Q 044640 98 AKITEQ 103 (305)
Q Consensus 98 n~i~~l 103 (305)
|+|.++
T Consensus 98 Nsi~~l 103 (233)
T KOG1644|consen 98 NSIQEL 103 (233)
T ss_pred cchhhh
Confidence 988875
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.24 E-value=0.028 Score=30.03 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=10.5
Q ss_pred CcEeeecCCCcCeeCCCCcc
Q 044640 90 LNQINLGRAKITEQRPSSFE 109 (305)
Q Consensus 90 L~~L~L~~n~i~~l~P~si~ 109 (305)
|++|+|++|.++.+ |.+++
T Consensus 2 L~~Ldls~n~l~~i-p~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSI-PSSFS 20 (22)
T ss_dssp ESEEEETSSEESEE-GTTTT
T ss_pred ccEEECCCCcCEeC-Chhhc
Confidence 55566666666655 54443
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.68 E-value=0.049 Score=48.03 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=20.1
Q ss_pred cccccEEEEEec--CCCcccCccccCCCCCcEeeecCCCcC
Q 044640 63 LKSLIWLSVHGC--LNLESFPESLEKMEHLNQINLGRAKIT 101 (305)
Q Consensus 63 l~~L~~L~l~~c--~~l~~lP~~~~~l~~L~~L~L~~n~i~ 101 (305)
|++|++|.++.| .....++.....+++|++|+|++|+++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 455555555554 333334444444455566666555554
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.51 E-value=0.043 Score=27.40 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=8.6
Q ss_pred CccEEEEecCCCcccC
Q 044640 18 NIKTLYLFETAIEEVP 33 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP 33 (305)
+|+.|+|++|.|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777777665
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.68 E-value=0.055 Score=55.01 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=41.0
Q ss_pred CccEEEEecCCCc--ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCc--cccCCCCCcEe
Q 044640 18 NIKTLYLFETAIE--EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPE--SLEKMEHLNQI 93 (305)
Q Consensus 18 ~L~~L~L~~n~i~--~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~--~~~~l~~L~~L 93 (305)
.|+.|.+.|-.+. +.-.--.++++|..||+++ .++..+ ..|+.|++|+.|.+.+ -.++...+ .+-+|++|+.|
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCCee
Confidence 4555555543332 1111223555666666666 344444 4456666666665544 22222221 23357777888
Q ss_pred eecCCCcCe
Q 044640 94 NLGRAKITE 102 (305)
Q Consensus 94 ~L~~n~i~~ 102 (305)
|+|......
T Consensus 226 DIS~~~~~~ 234 (699)
T KOG3665|consen 226 DISRDKNND 234 (699)
T ss_pred ecccccccc
Confidence 877654443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.05 Score=49.19 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=51.0
Q ss_pred CccEEEEecCCCc---ccCccccCCCCCCEEecccccc---cccccccccccccccEEEEEecCCCc-ccCccccCCCCC
Q 044640 18 NIKTLYLFETAIE---EVPSSIECLTNLTLLTISRCTR---LKRVSTSICKLKSLIWLSVHGCLNLE-SFPESLEKMEHL 90 (305)
Q Consensus 18 ~L~~L~L~~n~i~---~lP~si~~L~~L~~L~L~~c~~---l~~lP~~i~~l~~L~~L~l~~c~~l~-~lP~~~~~l~~L 90 (305)
.++.|+|.+|.|. ++-.-+.+|+.|+.|+++.|.. +..+| -.+++|++|-|.|...-. .....+..++.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5677999999887 4555568899999999987542 23344 234688888888754321 222334455556
Q ss_pred cEeeecCCCc
Q 044640 91 NQINLGRAKI 100 (305)
Q Consensus 91 ~~L~L~~n~i 100 (305)
+.|+++.|++
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 6666666643
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.0098 Score=53.62 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=64.4
Q ss_pred CccEEEEecCCCc--ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccC--ccccCCCCCcEe
Q 044640 18 NIKTLYLFETAIE--EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFP--ESLEKMEHLNQI 93 (305)
Q Consensus 18 ~L~~L~L~~n~i~--~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP--~~~~~l~~L~~L 93 (305)
.+++|||+++.|+ .+.--+..+++|+.|.+.+...-..+-..|.+=..|+.|++++|+-+.+.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5889999999888 566667888899999999865545555556666889999999998776543 345778889999
Q ss_pred eecCCCcC
Q 044640 94 NLGRAKIT 101 (305)
Q Consensus 94 ~L~~n~i~ 101 (305)
+|+.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 99886544
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=0.021 Score=51.09 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=27.3
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccc--cccccccccEEEEEecCC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVST--SICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~--~i~~l~~L~~L~l~~c~~ 76 (305)
.|+.|.|+-|.|+.+- .+..+++|+.|+|.. +.+..+-+ -+.++++|+.|+|..|.-
T Consensus 42 ~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred cceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCc
Confidence 4455555555555442 244555555555554 23333322 234555555555554433
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.26 E-value=0.18 Score=27.86 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=13.3
Q ss_pred CCccEEEEecCCCcccCccc
Q 044640 17 GNIKTLYLFETAIEEVPSSI 36 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si 36 (305)
.+|+.|+|++|.|+.+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 35677777777777776653
No 61
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.26 E-value=0.18 Score=27.86 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=13.3
Q ss_pred CCccEEEEecCCCcccCccc
Q 044640 17 GNIKTLYLFETAIEEVPSSI 36 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si 36 (305)
.+|+.|+|++|.|+.+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 35677777777777776653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.20 E-value=0.39 Score=42.47 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=56.7
Q ss_pred cCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccc--cccccccccccccccccEEEEEecCCC--cccCccccCC
Q 044640 12 FPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRC--TRLKRVSTSICKLKSLIWLSVHGCLNL--ESFPESLEKM 87 (305)
Q Consensus 12 ~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c--~~l~~lP~~i~~l~~L~~L~l~~c~~l--~~lP~~~~~l 87 (305)
+-+.+.+|+.|.+.+..++.+- .+..|++|+.|.++.| .-...++-....+++|++|++++|..- .+++ .+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhh
Confidence 3344456777776665554321 2445789999999987 334445555556799999999996432 2232 23456
Q ss_pred CCCcEeeecCCCcCe
Q 044640 88 EHLNQINLGRAKITE 102 (305)
Q Consensus 88 ~~L~~L~L~~n~i~~ 102 (305)
.+|..|++..+..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 677888887766554
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.67 E-value=0.32 Score=44.84 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=18.3
Q ss_pred cccCCCCCCEEeccccccc----ccccccccccccccEEEEEec
Q 044640 35 SIECLTNLTLLTISRCTRL----KRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 35 si~~L~~L~~L~L~~c~~l----~~lP~~i~~l~~L~~L~l~~c 74 (305)
.+.++++|+.|||..|... ..+...+..+++|+.|++++|
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 4455555555555553221 122233334455555555555
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=0.12 Score=46.72 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCccEEEEecCC--C--cccCccccCCCCCCEEeccccccccc-ccccccccccccEEEEEecCCCcccCc---cccCCC
Q 044640 17 GNIKTLYLFETA--I--EEVPSSIECLTNLTLLTISRCTRLKR-VSTSICKLKSLIWLSVHGCLNLESFPE---SLEKME 88 (305)
Q Consensus 17 ~~L~~L~L~~n~--i--~~lP~si~~L~~L~~L~L~~c~~l~~-lP~~i~~l~~L~~L~l~~c~~l~~lP~---~~~~l~ 88 (305)
.+|+.|+|+|+. + ..+-.-...+++|..|||++|..+.. .-..+.+++-|++|.++.|..+ .|+ .+..++
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 488899999972 2 23333346788999999999876653 2234567888999999999754 233 356778
Q ss_pred CCcEeeecCC
Q 044640 89 HLNQINLGRA 98 (305)
Q Consensus 89 ~L~~L~L~~n 98 (305)
+|.+|+..+.
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 8999988653
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.21 E-value=0.47 Score=26.07 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=15.0
Q ss_pred CCCCcEeeecCCCcCeeCCCC
Q 044640 87 MEHLNQINLGRAKITEQRPSS 107 (305)
Q Consensus 87 l~~L~~L~L~~n~i~~l~P~s 107 (305)
|++|+.|+|++|.++.+ |..
T Consensus 1 L~~L~~L~L~~N~l~~l-p~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSL-PPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcC-CHH
Confidence 45678888888888887 653
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.21 E-value=0.47 Score=26.07 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=15.0
Q ss_pred CCCCcEeeecCCCcCeeCCCC
Q 044640 87 MEHLNQINLGRAKITEQRPSS 107 (305)
Q Consensus 87 l~~L~~L~L~~n~i~~l~P~s 107 (305)
|++|+.|+|++|.++.+ |..
T Consensus 1 L~~L~~L~L~~N~l~~l-p~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSL-PPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcC-CHH
Confidence 45678888888888887 653
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=0.065 Score=48.01 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=62.3
Q ss_pred CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCc--cccCCCCCcEee
Q 044640 17 GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPE--SLEKMEHLNQIN 94 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~--~~~~l~~L~~L~ 94 (305)
.+.+.|+..|+.|..|-- +..++.|+.|.|+- +++.++.. +..++.|+.|+|..| .+.++-+ .+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 367789999999886522 46788999999998 45666644 567789999999874 4555543 357889999999
Q ss_pred ecCCCcCee
Q 044640 95 LGRAKITEQ 103 (305)
Q Consensus 95 L~~n~i~~l 103 (305)
|..|...+-
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 998876654
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=83.40 E-value=0.22 Score=45.87 Aligned_cols=84 Identities=14% Similarity=0.246 Sum_probs=59.7
Q ss_pred CccEEEEecCCCc-----ccCccccCCCCCCEEecccccccc----ccccccc-ccccccEEEEEecCCCcc----cCcc
Q 044640 18 NIKTLYLFETAIE-----EVPSSIECLTNLTLLTISRCTRLK----RVSTSIC-KLKSLIWLSVHGCLNLES----FPES 83 (305)
Q Consensus 18 ~L~~L~L~~n~i~-----~lP~si~~L~~L~~L~L~~c~~l~----~lP~~i~-~l~~L~~L~l~~c~~l~~----lP~~ 83 (305)
+|+.|||..|-++ .+-..+..|++|+.|++++|..-. .+-..+. ..++|++|.+.+|..... +-..
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 7899999999876 345557778899999999985321 1222221 357899999999865432 2333
Q ss_pred ccCCCCCcEeeecCCCcC
Q 044640 84 LEKMEHLNQINLGRAKIT 101 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~ 101 (305)
+...+.|+.|+|++|.+.
T Consensus 294 ~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcchhhHHhcCCccccc
Confidence 455788999999999884
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.06 E-value=0.031 Score=48.76 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=62.1
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
..+.|||+.|.+..+-..+..++.|..|+++. +.+..+|...+.+..++.++++. +.++.+|...+..+.++++++-+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 45668888888777777777888888888886 56777787777777777777766 46777888888888888887777
Q ss_pred CCcC
Q 044640 98 AKIT 101 (305)
Q Consensus 98 n~i~ 101 (305)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 6543
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.88 E-value=0.55 Score=42.15 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred CccEEEEecCCCc-----ccCccccCCCCCCEEeccccc----------ccccccccccccccccEEEEEecCCCcccCc
Q 044640 18 NIKTLYLFETAIE-----EVPSSIECLTNLTLLTISRCT----------RLKRVSTSICKLKSLIWLSVHGCLNLESFPE 82 (305)
Q Consensus 18 ~L~~L~L~~n~i~-----~lP~si~~L~~L~~L~L~~c~----------~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~ 82 (305)
.+..++|+||-|. ++-..|.+-.+|+..+++.-- ++.-+...+-++++|+..+||.|-.-..+|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 5677999999775 455567777888888887621 1122233345678999999999766666666
Q ss_pred cc----cCCCCCcEeeecCCCcCee
Q 044640 83 SL----EKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 83 ~~----~~l~~L~~L~L~~n~i~~l 103 (305)
.+ .+-..|.+|.|++|.+-.+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCcc
Confidence 54 4567799999999987633
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.43 E-value=0.22 Score=42.57 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred CccEEEEecCCCcc-cCccccCCCCCCEEeccccccccc-----ccccccccccccEEEEEecCCCcccC-ccccCCCCC
Q 044640 18 NIKTLYLFETAIEE-VPSSIECLTNLTLLTISRCTRLKR-----VSTSICKLKSLIWLSVHGCLNLESFP-ESLEKMEHL 90 (305)
Q Consensus 18 ~L~~L~L~~n~i~~-lP~si~~L~~L~~L~L~~c~~l~~-----lP~~i~~l~~L~~L~l~~c~~l~~lP-~~~~~l~~L 90 (305)
.++.++-+++.|.. =-..+.+++.|+.|.+.+|+.+.. +-. -.++|+.|++++|..+.+.- ..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHhhhh
Confidence 35667777777763 234577888888888888876532 222 24789999999998776543 234567777
Q ss_pred cEeeecC
Q 044640 91 NQINLGR 97 (305)
Q Consensus 91 ~~L~L~~ 97 (305)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7776644
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.99 E-value=0.058 Score=47.13 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=54.8
Q ss_pred cccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 30 EEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 30 ~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
.++|- .|......+.||++. +.+..+-..+..++.|..|+++. +...-+|+.++.+..++.+++..|..+.. |.+.
T Consensus 31 s~~~v~ei~~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~ 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQ-PKSQ 107 (326)
T ss_pred cccchhhhhccceeeeehhhh-hHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhC-Cccc
Confidence 34552 355566777788777 45555555666677777888876 45667777777777777777777777777 7776
Q ss_pred cccc
Q 044640 109 ENER 112 (305)
Q Consensus 109 ~~l~ 112 (305)
++.+
T Consensus 108 ~k~~ 111 (326)
T KOG0473|consen 108 KKEP 111 (326)
T ss_pred cccC
Confidence 6654
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.78 E-value=2 Score=24.01 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=11.4
Q ss_pred CccEEEEecCCCcccCc
Q 044640 18 NIKTLYLFETAIEEVPS 34 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~ 34 (305)
+|+.|+.++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45667777777776665
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.92 E-value=5.1 Score=22.31 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.1
Q ss_pred CCCCcEeeecCCCcCee
Q 044640 87 MEHLNQINLGRAKITEQ 103 (305)
Q Consensus 87 l~~L~~L~L~~n~i~~l 103 (305)
+.+|+.|+|+.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35788888888888765
No 75
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.96 E-value=5.1 Score=36.63 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=50.0
Q ss_pred ccEEEEecCCCcccCc--cc-cCCCCCCEEeccccccc--ccccccccccccccEEEEEecCCCcccCccccCCCCCcEe
Q 044640 19 IKTLYLFETAIEEVPS--SI-ECLTNLTLLTISRCTRL--KRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQI 93 (305)
Q Consensus 19 L~~L~L~~n~i~~lP~--si-~~L~~L~~L~L~~c~~l--~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L 93 (305)
++.|.|.++.|...-. .| ...+.++.|||.+|... ..+-..+.+|+.|++|+++.|+.-..+-...--+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4456666666653322 23 34567888899885321 2334445688999999998764322221111235678888
Q ss_pred eecCCCcC
Q 044640 94 NLGRAKIT 101 (305)
Q Consensus 94 ~L~~n~i~ 101 (305)
-|.++.+.
T Consensus 127 VLNgT~L~ 134 (418)
T KOG2982|consen 127 VLNGTGLS 134 (418)
T ss_pred EEcCCCCC
Confidence 88887654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=57.77 E-value=34 Score=25.93 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=40.2
Q ss_pred CccEEEEecCCCcccCcc-ccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccCc-cccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFPE-SLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP~-~~~~l~~L~~L~ 94 (305)
+|+.+.+.. .++.++.. +..+++|+.+.+.+ .+..++. .+.++++|+.+.+.. .+..++. .+..+.+|+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 566777764 56666554 56666788888776 2666654 344555788887754 3444443 345577777777
Q ss_pred ecCCCcCee
Q 044640 95 LGRAKITEQ 103 (305)
Q Consensus 95 L~~n~i~~l 103 (305)
+..+ +..+
T Consensus 88 ~~~~-~~~i 95 (129)
T PF13306_consen 88 IPSN-ITEI 95 (129)
T ss_dssp ETTT--BEE
T ss_pred cCcc-ccEE
Confidence 7543 4444
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.94 E-value=6 Score=21.06 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=8.7
Q ss_pred CCCcEeeecCCCcCe
Q 044640 88 EHLNQINLGRAKITE 102 (305)
Q Consensus 88 ~~L~~L~L~~n~i~~ 102 (305)
++|+.|+|++|.|..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 567777777777653
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=56.41 E-value=29 Score=26.38 Aligned_cols=74 Identities=14% Similarity=0.279 Sum_probs=42.6
Q ss_pred CccEEEEecCCCcccCcc-ccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCCcccC-ccccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNLESFP-ESLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l~~lP-~~~~~l~~L~~L~ 94 (305)
+|+.+.+.++ ++.++.. +.++..|+.+.+.+ .+..++.. +..+++|+.+.+... +..++ ..+.++ +|+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred cccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 6888998775 8877764 56777899999975 45556554 445889999998652 44444 345555 777777
Q ss_pred ecC
Q 044640 95 LGR 97 (305)
Q Consensus 95 L~~ 97 (305)
+..
T Consensus 110 ~~~ 112 (129)
T PF13306_consen 110 IPS 112 (129)
T ss_dssp -TT
T ss_pred ECC
Confidence 654
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.14 E-value=9 Score=20.88 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=7.5
Q ss_pred CCCCEEeccccccc
Q 044640 40 TNLTLLTISRCTRL 53 (305)
Q Consensus 40 ~~L~~L~L~~c~~l 53 (305)
++|+.|+|++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 35555666655443
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=45.39 E-value=4.9 Score=38.28 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=42.0
Q ss_pred CccEEEEecC--CCcc----cCccccCCCCCCEEecccccccccc--cccccccccccEEEEEecCCCc--ccCccccCC
Q 044640 18 NIKTLYLFET--AIEE----VPSSIECLTNLTLLTISRCTRLKRV--STSICKLKSLIWLSVHGCLNLE--SFPESLEKM 87 (305)
Q Consensus 18 ~L~~L~L~~n--~i~~----lP~si~~L~~L~~L~L~~c~~l~~l--P~~i~~l~~L~~L~l~~c~~l~--~lP~~~~~l 87 (305)
+|+.|+++++ .+.. .......+.+|+.|+++.|..+... .......++|+.|.+.+|..+. .+-.....+
T Consensus 215 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~ 294 (482)
T KOG1947|consen 215 NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERC 294 (482)
T ss_pred hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhc
Confidence 6777777762 1111 1223345577777777776543211 1111124677777776665432 122223445
Q ss_pred CCCcEeeecCC
Q 044640 88 EHLNQINLGRA 98 (305)
Q Consensus 88 ~~L~~L~L~~n 98 (305)
++|+.|++++.
T Consensus 295 ~~L~~L~l~~c 305 (482)
T KOG1947|consen 295 PSLRELDLSGC 305 (482)
T ss_pred CcccEEeeecC
Confidence 66777777653
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.36 E-value=17 Score=20.26 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.8
Q ss_pred CCCcEeeecCCCcC
Q 044640 88 EHLNQINLGRAKIT 101 (305)
Q Consensus 88 ~~L~~L~L~~n~i~ 101 (305)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888775
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=37.65 E-value=14 Score=35.05 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=48.3
Q ss_pred CCccEEEEecCC-Cccc-Cccc-cCCCCCCEEecccccccc--cccccccccccccEEEEEecCCCcc--cCccccCCCC
Q 044640 17 GNIKTLYLFETA-IEEV-PSSI-ECLTNLTLLTISRCTRLK--RVSTSICKLKSLIWLSVHGCLNLES--FPESLEKMEH 89 (305)
Q Consensus 17 ~~L~~L~L~~n~-i~~l-P~si-~~L~~L~~L~L~~c~~l~--~lP~~i~~l~~L~~L~l~~c~~l~~--lP~~~~~l~~ 89 (305)
.+|+.|+|+++. ++.. -..+ ..+++|+.|.+.+|..+. .+-.....+++|+.|++++|..+.. +.....++++
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN 322 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence 378889999887 5522 2223 237799999988887532 2222334568899999999987632 2222334555
Q ss_pred CcEee
Q 044640 90 LNQIN 94 (305)
Q Consensus 90 L~~L~ 94 (305)
|+.|.
T Consensus 323 l~~l~ 327 (482)
T KOG1947|consen 323 LRELK 327 (482)
T ss_pred hhhhh
Confidence 55544
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=35.71 E-value=15 Score=35.03 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=47.1
Q ss_pred eecCCCCCcccCCC-c----CCccEEEEecCC-CcccC-ccc-cCCCCCCEEecccccccc--cccccccccccccEEEE
Q 044640 2 DFSSCVNLTEFPQI-S----GNIKTLYLFETA-IEEVP-SSI-ECLTNLTLLTISRCTRLK--RVSTSICKLKSLIWLSV 71 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~-~----~~L~~L~L~~n~-i~~lP-~si-~~L~~L~~L~L~~c~~l~--~lP~~i~~l~~L~~L~l 71 (305)
+.++|+.++..+-. + .+|+.|-|+++. ++..- ..+ .+...|+.+++..|.... ++-..-.+.+.|+.|.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 45566554433311 1 267778777764 32211 112 345566677766654322 12222224456666666
Q ss_pred EecCCCccc-----CccccCCCCCcEeeecCCC
Q 044640 72 HGCLNLESF-----PESLEKMEHLNQINLGRAK 99 (305)
Q Consensus 72 ~~c~~l~~l-----P~~~~~l~~L~~L~L~~n~ 99 (305)
+.|...... -..-..+..|+.+.|++.+
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 666544322 2222234455666665543
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=34.15 E-value=46 Score=30.25 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=55.5
Q ss_pred CccEEEEecCCCc-ccCc----cccCCCCCCEEecccccccccccc-----c---------ccccccccEEEEEecCCCc
Q 044640 18 NIKTLYLFETAIE-EVPS----SIECLTNLTLLTISRCTRLKRVST-----S---------ICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 18 ~L~~L~L~~n~i~-~lP~----si~~L~~L~~L~L~~c~~l~~lP~-----~---------i~~l~~L~~L~l~~c~~l~ 78 (305)
.|+..+|+.|+|. +.|+ -|.+-+.|.+|.|.+| .++.+.. . +.+-+.|++..... +++.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRle 170 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLE 170 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhc
Confidence 6788999999887 4444 4677788999999885 4443321 1 12335677776655 4566
Q ss_pred ccCccc-----cCCCCCcEeeecCCCcCeeCCCCccc
Q 044640 79 SFPESL-----EKMEHLNQINLGRAKITEQRPSSFEN 110 (305)
Q Consensus 79 ~lP~~~-----~~l~~L~~L~L~~n~i~~l~P~si~~ 110 (305)
..|... ..-..|+.+.+..|.|. |..+..
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~ 204 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTM 204 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHH
Confidence 555432 22246778888888776 554443
No 85
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.36 E-value=17 Score=21.31 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=8.2
Q ss_pred EeeeeeEEEEeC
Q 044640 243 VKCYGVCPVYAN 254 (305)
Q Consensus 243 k~C~Gv~liy~~ 254 (305)
++| |.|+||+.
T Consensus 21 ~~C-G~RIlyK~ 31 (32)
T PF03604_consen 21 PEC-GHRILYKK 31 (32)
T ss_dssp SSS-S-SEEBE-
T ss_pred CcC-CCeEEEec
Confidence 889 99999974
No 86
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=25.69 E-value=37 Score=30.40 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=8.9
Q ss_pred ccccccCCCC
Q 044640 295 RICRDDEVDT 304 (305)
Q Consensus 295 ~~~~~~~~~~ 304 (305)
+|++||+|||
T Consensus 143 klGKdP~VDT 152 (331)
T KOG2894|consen 143 KLGKDPDVDT 152 (331)
T ss_pred hcCCCCCccc
Confidence 5699999998
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.83 E-value=33 Score=33.91 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=37.2
Q ss_pred CccEEEEecCCCcccC--ccc-cCCCCCCEEecccccccccccccccc--cccccEEEEEecCCCccc
Q 044640 18 NIKTLYLFETAIEEVP--SSI-ECLTNLTLLTISRCTRLKRVSTSICK--LKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP--~si-~~L~~L~~L~L~~c~~l~~lP~~i~~--l~~L~~L~l~~c~~l~~l 80 (305)
.+..++|++|.+..|- +++ ...++|+.|+|++|......-..+.+ ...|+.|.+.||...+++
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 5666888888776442 223 45678888888886222221122222 235788888887655543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.28 E-value=37 Score=33.58 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCCCCEEecccccccccc---cccccccccccEEEEEecCCCcccCccccCC--CCCcEeeecCCCcCee
Q 044640 38 CLTNLTLLTISRCTRLKRV---STSICKLKSLIWLSVHGCLNLESFPESLEKM--EHLNQINLGRAKITEQ 103 (305)
Q Consensus 38 ~L~~L~~L~L~~c~~l~~l---P~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l--~~L~~L~L~~n~i~~l 103 (305)
+...+..++|++| ++..+ ...-...++|+.|+|++|......-..++++ ..|++|-+.+|.+..-
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4456677788874 44433 2222345789999999973222222222332 3478888888877653
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=21.63 E-value=38 Score=32.42 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=52.7
Q ss_pred CccEEEEecCCC-c-ccCcc-ccCCCCCCEEeccccccccccc--ccccccccccEEEEEecCCCcc--cCccccCCCCC
Q 044640 18 NIKTLYLFETAI-E-EVPSS-IECLTNLTLLTISRCTRLKRVS--TSICKLKSLIWLSVHGCLNLES--FPESLEKMEHL 90 (305)
Q Consensus 18 ~L~~L~L~~n~i-~-~lP~s-i~~L~~L~~L~L~~c~~l~~lP--~~i~~l~~L~~L~l~~c~~l~~--lP~~~~~l~~L 90 (305)
.|+.|+.+++.- . ++-.. ..+..+|+.|.+..|+.+...- ..-.+.++|+.+++.+|..... +-..-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 578888887643 3 22222 4677899999999998654321 1123567899999988764432 33333467788
Q ss_pred cEeeecCC
Q 044640 91 NQINLGRA 98 (305)
Q Consensus 91 ~~L~L~~n 98 (305)
+.|.|++.
T Consensus 375 r~lslshc 382 (483)
T KOG4341|consen 375 RVLSLSHC 382 (483)
T ss_pred ccCChhhh
Confidence 88888753
Done!