Query 044640
Match_columns 305
No_of_seqs 308 out of 2399
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 1.9E-14 6.5E-19 131.3 12.5 132 1-137 86-231 (328)
2 4fcg_A Uncharacterized protein 99.5 2E-14 6.9E-19 131.2 11.6 137 1-139 155-305 (328)
3 2v70_A SLIT-2, SLIT homolog 2 99.4 1E-12 3.4E-17 113.1 11.8 139 1-142 16-160 (220)
4 1w8a_A SLIT protein; signaling 99.4 6.2E-13 2.1E-17 111.9 10.2 123 1-124 13-140 (192)
5 3rgz_A Protein brassinosteroid 99.4 6.7E-13 2.3E-17 134.2 10.2 81 1-81 471-555 (768)
6 2v9t_B SLIT homolog 2 protein 99.4 1.9E-12 6.4E-17 111.4 11.2 139 2-145 17-160 (220)
7 1ogq_A PGIP-2, polygalacturona 99.4 8E-13 2.7E-17 119.6 7.7 94 18-111 77-172 (313)
8 2wfh_A SLIT homolog 2 protein 99.4 2E-12 6.8E-17 109.0 9.5 110 2-114 16-128 (193)
9 4g8a_A TOLL-like receptor 4; l 99.4 3E-12 1E-16 125.1 12.3 133 8-142 42-180 (635)
10 3e6j_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 107.8 12.9 136 2-145 25-167 (229)
11 3rgz_A Protein brassinosteroid 99.3 2.5E-12 8.5E-17 130.0 10.7 108 1-108 447-558 (768)
12 1ogq_A PGIP-2, polygalacturona 99.3 1.8E-12 6.1E-17 117.3 7.8 140 1-142 81-228 (313)
13 2ell_A Acidic leucine-rich nuc 99.3 2.3E-12 7.9E-17 105.6 7.7 99 2-103 30-135 (168)
14 1p9a_G Platelet glycoprotein I 99.3 8.2E-12 2.8E-16 111.9 10.9 99 1-103 36-139 (290)
15 3vq2_A TLR4, TOLL-like recepto 99.3 1E-11 3.6E-16 121.5 12.4 139 3-142 18-160 (606)
16 3rfs_A Internalin B, repeat mo 99.3 1.9E-11 6.7E-16 108.1 12.1 84 18-103 64-148 (272)
17 3m19_A Variable lymphocyte rec 99.3 2.4E-11 8.4E-16 106.1 12.2 136 2-140 20-160 (251)
18 2v70_A SLIT-2, SLIT homolog 2 99.3 8.7E-12 3E-16 107.2 9.0 114 1-115 37-156 (220)
19 3m19_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 105.5 12.6 138 1-144 40-186 (251)
20 4b8c_D Glucose-repressible alc 99.3 5.6E-13 1.9E-17 134.1 1.5 105 1-108 229-336 (727)
21 2z62_A TOLL-like receptor 4, v 99.3 3.6E-11 1.2E-15 106.2 12.4 134 8-142 18-156 (276)
22 2r9u_A Variable lymphocyte rec 99.3 1E-11 3.4E-16 103.0 8.1 106 1-110 17-126 (174)
23 1ozn_A Reticulon 4 receptor; N 99.2 4.1E-11 1.4E-15 106.4 11.9 114 1-115 37-156 (285)
24 3g39_A Variable lymphocyte rec 99.2 1.6E-11 5.6E-16 101.2 8.6 100 1-103 14-117 (170)
25 2o6s_A Variable lymphocyte rec 99.2 7.1E-11 2.4E-15 100.0 12.8 135 3-144 14-155 (208)
26 4eco_A Uncharacterized protein 99.2 5.2E-12 1.8E-16 125.1 6.6 81 31-111 197-298 (636)
27 2xot_A Amphoterin-induced prot 99.2 6.1E-11 2.1E-15 109.3 12.7 124 2-130 24-154 (361)
28 3j0a_A TOLL-like receptor 5; m 99.2 4.4E-11 1.5E-15 122.1 12.7 141 2-143 10-156 (844)
29 2v9t_B SLIT homolog 2 protein 99.2 3.5E-11 1.2E-15 103.3 10.0 113 1-115 37-155 (220)
30 3e6j_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 103.5 10.5 112 1-115 45-162 (229)
31 4ezg_A Putative uncharacterize 99.2 6E-11 2.1E-15 99.9 11.2 95 18-115 45-139 (197)
32 4ezg_A Putative uncharacterize 99.2 2.5E-11 8.5E-16 102.2 8.7 135 1-142 49-188 (197)
33 2xwt_C Thyrotropin receptor; s 99.2 4.1E-11 1.4E-15 103.7 10.3 107 6-114 20-129 (239)
34 1ozn_A Reticulon 4 receptor; N 99.2 6.2E-11 2.1E-15 105.3 11.6 139 1-141 61-207 (285)
35 2o6q_A Variable lymphocyte rec 99.2 1E-10 3.6E-15 103.2 12.9 111 2-115 22-136 (270)
36 1dce_A Protein (RAB geranylger 99.2 1.6E-11 5.6E-16 120.0 8.3 102 1-107 446-551 (567)
37 2o6q_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 102.9 12.9 113 1-115 42-160 (270)
38 4b8c_D Glucose-repressible alc 99.2 8.1E-12 2.8E-16 125.6 5.7 96 17-115 224-319 (727)
39 3rfs_A Internalin B, repeat mo 99.2 9.9E-11 3.4E-15 103.5 11.8 110 2-114 69-183 (272)
40 4eco_A Uncharacterized protein 99.2 1.2E-11 3.9E-16 122.6 6.3 141 1-146 254-411 (636)
41 2o6r_A Variable lymphocyte rec 99.2 9.2E-11 3.1E-15 96.9 10.8 119 2-124 13-138 (177)
42 3t6q_A CD180 antigen; protein- 99.2 7.9E-11 2.7E-15 115.2 11.7 108 8-115 23-132 (606)
43 2z66_A Variable lymphocyte rec 99.2 2.8E-11 9.5E-16 108.5 7.7 97 17-114 78-177 (306)
44 1w8a_A SLIT protein; signaling 99.2 5.8E-11 2E-15 99.7 8.8 102 1-103 34-141 (192)
45 2je0_A Acidic leucine-rich nuc 99.2 1.8E-11 6E-16 98.2 4.9 84 18-103 18-103 (149)
46 2xwt_C Thyrotropin receptor; s 99.2 2E-10 6.8E-15 99.4 11.7 111 1-114 36-157 (239)
47 1p9a_G Platelet glycoprotein I 99.2 1.7E-10 5.9E-15 103.2 11.2 119 1-123 15-137 (290)
48 3zyj_A Leucine-rich repeat-con 99.2 1.5E-10 5E-15 109.4 11.3 100 1-102 93-199 (440)
49 4ecn_A Leucine-rich repeat pro 99.2 4E-11 1.4E-15 122.6 7.9 140 1-146 496-653 (876)
50 2o6s_A Variable lymphocyte rec 99.2 1.8E-10 6.1E-15 97.5 10.7 112 1-115 33-151 (208)
51 2z66_A Variable lymphocyte rec 99.1 1.2E-10 4E-15 104.4 9.5 114 1-115 83-202 (306)
52 4ecn_A Leucine-rich repeat pro 99.1 6.7E-11 2.3E-15 120.9 8.8 136 1-142 453-626 (876)
53 3vq2_A TLR4, TOLL-like recepto 99.1 7.7E-11 2.6E-15 115.3 8.6 97 18-114 400-499 (606)
54 2xot_A Amphoterin-induced prot 99.1 1.4E-10 4.8E-15 106.9 9.9 105 1-108 44-155 (361)
55 1a9n_A U2A', U2A'; complex (nu 99.1 5.7E-11 1.9E-15 98.2 6.4 101 1-106 24-130 (176)
56 1ziw_A TOLL-like receptor 3; i 99.1 2.1E-10 7.3E-15 113.7 11.7 112 2-115 10-124 (680)
57 2z63_A TOLL-like receptor 4, v 99.1 3.4E-10 1.2E-14 109.6 12.7 133 8-141 18-155 (570)
58 3v47_A TOLL-like receptor 5B a 99.1 1.7E-10 5.7E-15 108.9 10.2 123 18-142 276-402 (455)
59 3zyi_A Leucine-rich repeat-con 99.1 2.4E-10 8.1E-15 108.3 11.2 96 18-115 148-245 (452)
60 2z62_A TOLL-like receptor 4, v 99.1 1.5E-10 5.2E-15 102.2 9.1 114 1-115 33-152 (276)
61 2z80_A TOLL-like receptor 2, v 99.1 1.1E-10 3.8E-15 106.9 8.2 111 2-115 37-152 (353)
62 4g8a_A TOLL-like receptor 4; l 99.1 1.3E-10 4.3E-15 113.6 9.1 112 1-115 57-176 (635)
63 3v47_A TOLL-like receptor 5B a 99.1 2.6E-10 8.8E-15 107.6 10.6 127 1-128 280-412 (455)
64 3zyi_A Leucine-rich repeat-con 99.1 4.1E-10 1.4E-14 106.7 11.6 94 18-114 124-220 (452)
65 2wfh_A SLIT homolog 2 protein 99.1 1.9E-10 6.4E-15 96.8 8.2 100 1-103 36-141 (193)
66 2id5_A Lingo-1, leucine rich r 99.1 4.4E-10 1.5E-14 106.9 11.7 105 8-113 22-129 (477)
67 2z7x_B TOLL-like receptor 1, v 99.1 2.4E-10 8.4E-15 109.8 9.8 111 1-115 5-118 (520)
68 2ft3_A Biglycan; proteoglycan, 99.1 5E-10 1.7E-14 101.6 11.2 94 18-115 124-220 (332)
69 2z63_A TOLL-like receptor 4, v 99.1 1.4E-10 4.9E-15 112.3 7.8 99 17-115 373-473 (570)
70 2z81_A CD282 antigen, TOLL-lik 99.1 1.8E-10 6.3E-15 111.2 8.3 82 18-99 51-134 (549)
71 2id5_A Lingo-1, leucine rich r 99.1 4.8E-10 1.7E-14 106.6 11.0 113 1-115 37-155 (477)
72 1wwl_A Monocyte differentiatio 99.1 2.3E-10 7.8E-15 103.2 8.2 102 1-102 100-215 (312)
73 3t6q_A CD180 antigen; protein- 99.1 6.8E-10 2.3E-14 108.6 11.8 102 1-103 259-365 (606)
74 2z7x_B TOLL-like receptor 1, v 99.1 6.2E-10 2.1E-14 106.9 11.0 135 1-140 307-449 (520)
75 2z81_A CD282 antigen, TOLL-lik 99.0 2.5E-10 8.6E-15 110.2 8.1 112 3-115 12-126 (549)
76 2ell_A Acidic leucine-rich nuc 99.0 2.5E-10 8.5E-15 93.3 6.9 103 17-122 24-132 (168)
77 1xku_A Decorin; proteoglycan, 99.0 1.1E-09 3.6E-14 99.3 11.4 95 18-115 172-266 (330)
78 2z80_A TOLL-like receptor 2, v 99.0 2.6E-10 8.8E-15 104.4 7.3 111 1-114 57-176 (353)
79 3oja_A Leucine-rich immune mol 99.0 4.5E-10 1.5E-14 107.7 9.3 129 2-135 105-237 (487)
80 1h6u_A Internalin H; cell adhe 99.0 1.1E-09 3.8E-14 98.7 10.9 97 1-103 46-144 (308)
81 1xeu_A Internalin C; cellular 99.0 1.4E-09 4.7E-14 95.9 11.2 95 2-103 47-143 (263)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 5.7E-10 2E-14 108.5 9.5 111 1-115 36-149 (562)
83 1dce_A Protein (RAB geranylger 99.0 3.4E-10 1.1E-14 110.7 7.7 103 18-124 442-547 (567)
84 1h6u_A Internalin H; cell adhe 99.0 1.2E-09 4.2E-14 98.4 10.9 107 1-115 68-176 (308)
85 3zyj_A Leucine-rich repeat-con 99.0 1.7E-09 5.9E-14 102.0 12.1 104 8-113 54-161 (440)
86 1xku_A Decorin; proteoglycan, 99.0 2.2E-09 7.6E-14 97.1 12.3 99 1-103 105-207 (330)
87 2ft3_A Biglycan; proteoglycan, 99.0 9.6E-10 3.3E-14 99.7 9.7 109 2-115 39-150 (332)
88 2je0_A Acidic leucine-rich nuc 99.0 3.1E-10 1.1E-14 90.9 5.3 102 1-106 22-130 (149)
89 2o6r_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 90.0 9.0 100 1-103 33-139 (177)
90 3j0a_A TOLL-like receptor 5; m 99.0 1.1E-09 3.6E-14 111.9 10.3 113 1-114 29-150 (844)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.7E-09 5.7E-14 105.2 11.2 106 1-108 336-448 (562)
92 3o53_A Protein LRIM1, AGAP0063 99.0 9.5E-10 3.3E-14 99.3 8.7 127 2-134 105-236 (317)
93 3o6n_A APL1; leucine-rich repe 99.0 9.6E-10 3.3E-14 101.9 8.2 111 2-114 51-167 (390)
94 1ziw_A TOLL-like receptor 3; i 99.0 1.6E-09 5.5E-14 107.4 10.1 143 1-146 30-180 (680)
95 1h6t_A Internalin B; cell adhe 99.0 3E-09 1E-13 95.1 10.8 107 1-115 51-159 (291)
96 1jl5_A Outer protein YOPM; leu 99.0 3E-09 1E-13 101.1 11.3 96 2-106 117-212 (454)
97 3o6n_A APL1; leucine-rich repe 98.9 1.9E-09 6.7E-14 99.8 9.6 92 18-112 227-318 (390)
98 1h6t_A Internalin B; cell adhe 98.9 3.7E-09 1.3E-13 94.5 11.0 106 1-114 73-180 (291)
99 3oja_B Anopheles plasmodium-re 98.9 2.8E-09 9.7E-14 104.5 11.2 101 1-103 80-186 (597)
100 3oja_B Anopheles plasmodium-re 98.9 1.1E-09 3.7E-14 107.5 8.2 112 2-115 57-174 (597)
101 2ifg_A High affinity nerve gro 98.9 1.9E-09 6.6E-14 98.2 9.2 99 2-103 14-118 (347)
102 3cvr_A Invasion plasmid antige 98.9 2.8E-09 9.5E-14 104.2 10.8 93 1-106 85-177 (571)
103 3g39_A Variable lymphocyte rec 98.9 2.8E-09 9.5E-14 87.7 8.9 102 18-123 10-115 (170)
104 3cvr_A Invasion plasmid antige 98.9 6.5E-10 2.2E-14 108.7 5.8 131 1-154 105-244 (571)
105 1wwl_A Monocyte differentiatio 98.9 6.3E-10 2.2E-14 100.3 5.3 86 16-102 94-187 (312)
106 1jl5_A Outer protein YOPM; leu 98.9 4.7E-09 1.6E-13 99.8 11.2 99 1-108 158-256 (454)
107 4glp_A Monocyte differentiatio 98.9 2.2E-09 7.4E-14 96.6 8.4 58 18-75 118-180 (310)
108 1xeu_A Internalin C; cellular 98.9 3.2E-09 1.1E-13 93.6 8.8 129 2-144 25-157 (263)
109 1a9n_A U2A', U2A'; complex (nu 98.9 5.9E-10 2E-14 92.0 3.8 100 1-103 47-155 (176)
110 4ay9_X Follicle-stimulating ho 98.9 4.1E-09 1.4E-13 96.5 9.6 98 8-106 20-121 (350)
111 3g06_A SSPH2 (leucine-rich rep 98.9 6.2E-09 2.1E-13 102.8 11.5 31 2-33 127-157 (622)
112 3oja_A Leucine-rich immune mol 98.9 1.2E-09 4.1E-14 104.8 6.0 128 1-133 125-260 (487)
113 2r9u_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 86.7 8.8 94 18-115 13-108 (174)
114 3g06_A SSPH2 (leucine-rich rep 98.9 1.5E-09 5E-14 107.2 6.0 116 2-131 187-304 (622)
115 3o53_A Protein LRIM1, AGAP0063 98.9 1.8E-09 6E-14 97.5 5.7 128 1-133 125-260 (317)
116 1m9s_A Internalin B; cell inva 98.9 8.8E-09 3E-13 101.4 11.1 97 1-103 48-146 (605)
117 1m9s_A Internalin B; cell inva 98.9 7E-09 2.4E-13 102.1 9.9 107 1-115 70-178 (605)
118 4fmz_A Internalin; leucine ric 98.8 1.2E-08 4E-13 92.8 10.6 92 2-99 50-143 (347)
119 4glp_A Monocyte differentiatio 98.8 3.2E-09 1.1E-13 95.5 6.2 145 1-155 122-287 (310)
120 4fmz_A Internalin; leucine ric 98.8 1.4E-08 5E-13 92.1 10.4 98 1-103 71-170 (347)
121 2ifg_A High affinity nerve gro 98.8 1E-08 3.5E-13 93.4 8.6 87 20-108 11-99 (347)
122 3bz5_A Internalin-J, INLJ; leu 98.8 2.6E-08 8.7E-13 94.8 11.4 95 1-103 90-185 (457)
123 3bz5_A Internalin-J, INLJ; leu 98.8 2.9E-08 9.8E-13 94.4 11.7 94 1-103 47-142 (457)
124 1ds9_A Outer arm dynein; leuci 98.8 1.3E-10 4.6E-15 97.8 -5.1 83 17-103 48-130 (198)
125 1o6v_A Internalin A; bacterial 98.7 2.4E-08 8.4E-13 94.7 9.5 97 1-103 226-324 (466)
126 1o6v_A Internalin A; bacterial 98.7 6.9E-08 2.4E-12 91.6 10.9 106 1-114 204-311 (466)
127 2ast_B S-phase kinase-associat 98.7 1.4E-09 4.7E-14 98.4 -1.8 84 18-101 94-182 (336)
128 1ds9_A Outer arm dynein; leuci 98.6 3.5E-10 1.2E-14 95.2 -5.9 118 18-142 24-147 (198)
129 2ast_B S-phase kinase-associat 98.6 1.4E-09 4.7E-14 98.4 -3.0 81 18-98 119-205 (336)
130 2ca6_A RAN GTPase-activating p 98.4 3.7E-08 1.3E-12 91.1 1.0 86 17-103 159-259 (386)
131 2ca6_A RAN GTPase-activating p 98.4 7.5E-08 2.6E-12 89.0 1.6 123 1-124 164-317 (386)
132 4ay9_X Follicle-stimulating ho 98.3 3.4E-06 1.2E-10 76.9 11.4 75 1-76 35-116 (350)
133 3goz_A Leucine-rich repeat-con 98.1 6E-07 2.1E-11 82.3 0.5 102 2-103 4-124 (362)
134 3goz_A Leucine-rich repeat-con 97.9 1.4E-06 4.9E-11 79.8 0.4 101 1-102 85-210 (362)
135 1z7x_W Ribonuclease inhibitor; 97.8 3.7E-06 1.3E-10 79.0 1.3 85 17-101 28-126 (461)
136 1z7x_W Ribonuclease inhibitor; 97.8 1.5E-06 5.2E-11 81.6 -1.6 113 1-114 261-400 (461)
137 3ogk_B Coronatine-insensitive 97.8 4.4E-06 1.5E-10 81.0 1.3 57 16-73 191-252 (592)
138 3un9_A NLR family member X1; l 97.8 3.2E-06 1.1E-10 78.2 0.2 86 17-102 126-225 (372)
139 3sb4_A Hypothetical leucine ri 97.6 0.00013 4.5E-09 65.6 8.2 93 17-113 226-322 (329)
140 3e4g_A ATP synthase subunit S, 97.6 7.8E-05 2.7E-09 61.4 5.5 82 18-99 62-150 (176)
141 3ogk_B Coronatine-insensitive 97.6 7.3E-06 2.5E-10 79.5 -0.9 42 62-103 190-235 (592)
142 3rw6_A Nuclear RNA export fact 97.5 3.4E-05 1.2E-09 68.0 3.0 79 22-103 148-235 (267)
143 2p1m_B Transport inhibitor res 97.5 1.3E-06 4.4E-11 84.7 -7.3 82 17-98 130-221 (594)
144 2p1m_B Transport inhibitor res 97.5 2.9E-05 9.8E-10 75.2 2.1 83 17-99 105-195 (594)
145 3un9_A NLR family member X1; l 97.4 1.5E-05 5.2E-10 73.6 -0.8 86 17-102 101-197 (372)
146 3sb4_A Hypothetical leucine ri 97.1 0.001 3.4E-08 59.8 7.4 90 1-95 231-328 (329)
147 3rw6_A Nuclear RNA export fact 97.0 0.00013 4.5E-09 64.2 1.0 76 17-94 170-257 (267)
148 2ra8_A Uncharacterized protein 97.0 0.00046 1.6E-08 63.4 4.4 83 17-101 172-265 (362)
149 1io0_A Tropomodulin; LRR prote 96.9 0.00035 1.2E-08 57.7 2.0 85 18-102 37-137 (185)
150 1io0_A Tropomodulin; LRR prote 96.6 0.00046 1.6E-08 57.0 1.1 85 17-101 65-164 (185)
151 3e4g_A ATP synthase subunit S, 96.4 0.0019 6.5E-08 53.1 3.6 78 1-79 66-154 (176)
152 3rfe_A Platelet glycoprotein I 96.1 0.0049 1.7E-07 47.9 4.1 43 8-50 19-65 (130)
153 2ra8_A Uncharacterized protein 94.9 0.046 1.6E-06 49.9 6.7 77 17-96 139-227 (362)
154 4fdw_A Leucine rich hypothetic 94.0 0.25 8.5E-06 45.6 9.7 54 18-73 181-235 (401)
155 3rfe_A Platelet glycoprotein I 93.5 0.083 2.8E-06 40.7 4.6 50 21-73 12-64 (130)
156 4fdw_A Leucine rich hypothetic 93.4 0.42 1.4E-05 44.0 10.0 90 18-111 249-345 (401)
157 4gt6_A Cell surface protein; l 86.4 2.4 8.3E-05 38.3 8.5 74 18-96 266-342 (394)
158 1pgv_A TMD-1, tropomodulin TMD 83.5 0.44 1.5E-05 39.5 1.8 81 18-98 42-136 (197)
159 1pgv_A TMD-1, tropomodulin TMD 80.6 0.42 1.5E-05 39.6 0.7 83 18-100 71-169 (197)
160 4fs7_A Uncharacterized protein 75.9 4.5 0.00015 36.5 6.2 75 18-97 298-375 (394)
161 4fs7_A Uncharacterized protein 74.2 5.3 0.00018 36.0 6.3 75 35-114 292-368 (394)
162 4h09_A Hypothetical leucine ri 72.8 16 0.00056 32.3 9.1 81 18-103 218-301 (379)
163 4gt6_A Cell surface protein; l 66.2 16 0.00054 32.8 7.6 100 35-142 260-364 (394)
164 4h09_A Hypothetical leucine ri 52.0 64 0.0022 28.3 9.0 12 84-95 306-317 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=1.9e-14 Score=131.32 Aligned_cols=132 Identities=22% Similarity=0.347 Sum_probs=89.6
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
|+|++| .++.+|..+. +|++|+|++|.|+.+|..++.+++|+.|+|++| .+..+|..+..+++|++|++++|+.+
T Consensus 86 L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 86 LELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred EEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCc
Confidence 467776 6667776554 677788888877777777777888888888774 45577777777778888888777777
Q ss_pred cccCccccC---------CCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCC
Q 044640 78 ESFPESLEK---------MEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSG 137 (305)
Q Consensus 78 ~~lP~~~~~---------l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~ 137 (305)
+.+|..++. +++|++|++++|.++.+ |..+..+.+|. .+..+.+. .+|..|......
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L 231 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKL 231 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTC
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCC--cCchhhccCCCC
Confidence 777766554 77777777777777766 76666665554 33333333 356555544333
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=2e-14 Score=131.17 Aligned_cols=137 Identities=23% Similarity=0.321 Sum_probs=83.9
Q ss_pred CeecCCCCCcccCCC------------cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccE
Q 044640 1 IDFSSCVNLTEFPQI------------SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIW 68 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~------------~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~ 68 (305)
|+|++|..++.+|.. +.+|+.|+|++|.|+.+|..++.+++|+.|+|++| .+..+|..+..+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCE
Confidence 355565556666653 23566666666666666666666666666666663 44456666666666777
Q ss_pred EEEEecCCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcE
Q 044640 69 LSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSL 139 (305)
Q Consensus 69 L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~ 139 (305)
|++++|+..+.+|..++.+++|+.|++++|.+.+.+|..+..+.+|. ++..+.+.| .+|+++.+......
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCI 305 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCE
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-hccHHHhhccCceE
Confidence 77766666666666666666777777766655555566666655554 444444444 46776665544433
No 3
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=113.06 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=106.8
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCcccCc--cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPS--SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~--si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~ 76 (305)
|+++++ .++.+|..+. .++.|+|++|.|+.++. .+..+++|+.|+|++|+ +..++. .+..+++|++|++++|..
T Consensus 16 l~~s~n-~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 16 VDCSNQ-KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeCCC-CcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCcc
Confidence 467776 7889998765 78999999999998843 37999999999999954 555554 789999999999999765
Q ss_pred CcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 77 LESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 77 l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
....|..++.+++|++|+|++|.++++.|..+..+.+|. .+..+.+.+ -.|..|........+.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEe
Confidence 555556689999999999999999999777787777665 555555554 24777765444444333
No 4
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=6.2e-13 Score=111.92 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=101.1
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCcccCcc--ccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPSS--IECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~s--i~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
|+++++ .++++|..+. +++.|+|++|.|+.+|.. ++.+++|+.|+|++|+.....|..+..+++|+.|++++|...
T Consensus 13 l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 13 VDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp EECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred EEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 467776 7899998665 899999999999998874 899999999999996555555888999999999999997666
Q ss_pred cccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCC
Q 044640 78 ESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPG 124 (305)
Q Consensus 78 ~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG 124 (305)
...|..+..+++|++|+|++|.++++.|..+..+.++. ++..+.+.+
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55666789999999999999999999777777776665 444555554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.39 E-value=6.7e-13 Score=134.18 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=47.7
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++|...+.+|..+. +|+.|+|++|.++ .+|..++.+++|+.|++++|+..+.+|..++.+++|+.|++++|..
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 35566644445555443 5666666666666 5666666666666666666555556666666666666666665544
Q ss_pred CcccC
Q 044640 77 LESFP 81 (305)
Q Consensus 77 l~~lP 81 (305)
.+.+|
T Consensus 551 ~g~ip 555 (768)
T 3rgz_A 551 NGTIP 555 (768)
T ss_dssp ESBCC
T ss_pred CCcCC
Confidence 33333
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=1.9e-12 Score=111.35 Aligned_cols=139 Identities=21% Similarity=0.208 Sum_probs=105.5
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+++++ .++.+|..+. +|+.|+|++|.|+.+|. .+..+++|+.|+|++|+.....|..+.++++|++|++++| .+..
T Consensus 17 ~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 94 (220)
T 2v9t_B 17 DCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITE 94 (220)
T ss_dssp ECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCC
T ss_pred EcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCc
Confidence 45565 7889998665 89999999999998876 6899999999999996544445888999999999999996 5566
Q ss_pred cCcc-ccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEEEcC
Q 044640 80 FPES-LEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTLQMP 145 (305)
Q Consensus 80 lP~~-~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~lp 145 (305)
+|.. +..+++|+.|+|++|.++++.|..+..+.+|. .+..+.+.+ ..|..|....... .++|.
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~--~L~L~ 160 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQ--TMHLA 160 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC--EEECC
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCC--EEEeC
Confidence 7654 68899999999999999999677777776665 455555544 1234565443344 44443
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.36 E-value=8e-13 Score=119.60 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=43.2
Q ss_pred CccEEEEec-CCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeee
Q 044640 18 NIKTLYLFE-TAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~-n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L 95 (305)
+|+.|+|++ |.+. .+|..++.+++|++|+|++|.....+|..+..+++|++|++++|.....+|..++.+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 344445542 4444 44444444455555555443333344444444445555555444333344444444445555555
Q ss_pred cCCCcCeeCCCCcccc
Q 044640 96 GRAKITEQRPSSFENE 111 (305)
Q Consensus 96 ~~n~i~~l~P~si~~l 111 (305)
++|.+++..|..+..+
T Consensus 157 ~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSF 172 (313)
T ss_dssp CSSCCEEECCGGGGCC
T ss_pred cCCcccCcCCHHHhhh
Confidence 5554443334444433
No 8
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=109.05 Aligned_cols=110 Identities=20% Similarity=0.275 Sum_probs=90.8
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccCccccCCCCCCEEeccccccccccc-ccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+++++ .++++|..+. +|+.|+|++|.|+.+|..+..+++|+.|+|++|. +..++ ..+..+++|+.|++++|.....
T Consensus 16 ~~~~~-~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 16 RCSNK-GLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp ECTTS-CCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EcCCC-CCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 56666 7889997654 8999999999999999999999999999999964 55555 5688999999999999765554
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCC-CccccccC
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPS-SFENERGR 114 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~-si~~l~~l 114 (305)
.|..+..+++|+.|+|++|.++.+ |. .+..+.++
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L 128 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSAL 128 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTC
T ss_pred CHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccc
Confidence 556789999999999999999998 54 45555544
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=3e-12 Score=125.14 Aligned_cols=133 Identities=19% Similarity=0.281 Sum_probs=105.7
Q ss_pred CCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccC-cc
Q 044640 8 NLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFP-ES 83 (305)
Q Consensus 8 ~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP-~~ 83 (305)
.++++|..+. +++.|+|++|.|+.+|+ +|.++++|++|+|++| .+..+|+ .+.+|++|++|+|++| .+..+| ..
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~ 119 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA 119 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGG
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHH
Confidence 6889998775 89999999999999875 6999999999999996 5666754 6889999999999996 466776 46
Q ss_pred ccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 84 LEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
+..+++|++|+|++|.++++.+..++++++|. ++..+.+.+..+|..+........+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 88999999999999999998445677777775 555666666567887776555544443
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=8.5e-12 Score=107.81 Aligned_cols=136 Identities=24% Similarity=0.280 Sum_probs=103.4
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~ 78 (305)
+.+++ .++.+|..+. +|+.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|. .+..+++|+.|++++|. +.
T Consensus 25 ~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~ 101 (229)
T 3e6j_A 25 DCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LT 101 (229)
T ss_dssp ECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred EccCC-CcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CC
Confidence 44554 7889998654 899999999999977 677899999999999995 5677775 46789999999999975 55
Q ss_pred ccC-ccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCc-cccccCCCCcEEEEEcC
Q 044640 79 SFP-ESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIP-EWFSNQSSGSLLTLQMP 145 (305)
Q Consensus 79 ~lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP-~~f~~~~~~~~l~i~lp 145 (305)
.+| ..+..+++|+.|+|++|.++.+ |..+..+.+|. .+..+.+.+ +| ..|....... .+.+.
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~--~L~l~ 167 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKS--IPHGAFDRLSSLT--HAYLF 167 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCC--CCTTTTTTCTTCC--EEECT
T ss_pred ccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCc--cCHHHHhCCCCCC--EEEee
Confidence 555 4578899999999999999988 99888777765 455555543 44 4454443444 44543
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=2.5e-12 Score=130.01 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=94.6
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++|...+.+|..+. +|+.|+|++|.++ .+|..++.+++|+.|++++|+....+|..++.+++|++|++++|..
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 56888866668887664 7899999999999 7899999999999999999887779999999999999999999988
Q ss_pred CcccCccccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 77 LESFPESLEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 77 l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
.+.+|..++.+++|+.|++++|.+.+.+|..+
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 88999999999999999999998886557654
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.33 E-value=1.8e-12 Score=117.30 Aligned_cols=140 Identities=17% Similarity=0.288 Sum_probs=111.9
Q ss_pred CeecC-CCCCcccCCCcC---CccEEEEecCCCc-ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecC
Q 044640 1 IDFSS-CVNLTEFPQISG---NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~-c~~l~~~P~~~~---~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~ 75 (305)
|+|++ |.....+|..++ +|++|+|++|.|+ .+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 46774 544457776654 7999999999999 899999999999999999976666899999999999999999987
Q ss_pred CCcccCccccCCC-CCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 76 NLESFPESLEKME-HLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 76 ~l~~lP~~~~~l~-~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
....+|..++.+. +|+.|++++|.+.+..|..+..+. +. .+..+.+.+ .+|.+|........+.+
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQKIHL 228 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGGCCTTSCCSEEEC
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCCHHHhcCCCCCEEEC
Confidence 7669999999998 999999999999977688887765 44 445555554 47777866555444443
No 13
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.3e-12 Score=105.59 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=49.3
Q ss_pred eecCCCCCc--ccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 2 DFSSCVNLT--EFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 2 ~Ls~c~~l~--~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
+|++| .++ .+|..+. +|+.|+|++|.|+.+ ..+..+++|+.|++++|.....+|..+..+++|++|++++| .
T Consensus 30 ~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 106 (168)
T 2ell_A 30 VLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-K 106 (168)
T ss_dssp ECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-S
T ss_pred ECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-c
Confidence 44454 333 4554432 455555555555544 44555555555555554322224444444555555555554 3
Q ss_pred CcccC--ccccCCCCCcEeeecCCCcCee
Q 044640 77 LESFP--ESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 77 l~~lP--~~~~~l~~L~~L~L~~n~i~~l 103 (305)
+..+| ..+..+++|+.|++++|.+.++
T Consensus 107 l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 107 LKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp CCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred cCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 33433 3445555555555555555554
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.31 E-value=8.2e-12 Score=111.86 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=53.7
Q ss_pred CeecCCCCCcccC-CCc---CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFP-QIS---GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P-~~~---~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++| .++.++ ..+ .+|+.|+|++|.|+.+|.. +.+++|+.|++++ +.+..+|..+..+++|++|++++|.
T Consensus 36 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~- 111 (290)
T 1p9a_G 36 LHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR- 111 (290)
T ss_dssp EECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSC-
T ss_pred EEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCc-
Confidence 356665 344443 222 2556666666666655543 5556666666665 3455555555556666666666543
Q ss_pred CcccC-ccccCCCCCcEeeecCCCcCee
Q 044640 77 LESFP-ESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 77 l~~lP-~~~~~l~~L~~L~L~~n~i~~l 103 (305)
+..+| ..+..+++|+.|+|++|.++.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 33333 4455556666666666666555
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=1e-11 Score=121.49 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=106.4
Q ss_pred ecCCCCCcccCCCc-CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCccc
Q 044640 3 FSSCVNLTEFPQIS-GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 3 Ls~c~~l~~~P~~~-~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~l 80 (305)
.+++ .++.+|..+ .+++.|+|++|.++.+|. .+..+++|+.|++++|......|..+.++++|++|++++|......
T Consensus 18 c~~~-~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 18 CMDQ-KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp CTTS-CCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred ccCC-CcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence 4443 688888755 489999999999997765 7899999999999996544444667889999999999997655555
Q ss_pred CccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 81 PESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 81 P~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
|..++.+++|++|++++|.+.++.|..++.+.+|. .+..+.+.+.++|.+|........+.+
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 88899999999999999999888446777777765 555666665568888876555554443
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.29 E-value=1.9e-11 Score=108.10 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=41.9
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccCccccCCCCCcEeeec
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLG 96 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~ 96 (305)
+|+.|+|++|.++.++ .++.+++|+.|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|+++
T Consensus 64 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 5555555555555543 45555555555555532 333332 23455555555555543332222334555555555555
Q ss_pred CCCcCee
Q 044640 97 RAKITEQ 103 (305)
Q Consensus 97 ~n~i~~l 103 (305)
+|.++++
T Consensus 142 ~n~l~~~ 148 (272)
T 3rfs_A 142 HNQLQSL 148 (272)
T ss_dssp SSCCCCC
T ss_pred CCccCcc
Confidence 5555555
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=2.4e-11 Score=106.11 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=96.4
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+++++ .++.+|..+. +++.|+|++|.|+.++. .+..+++|+.|+|++|......|..+..+++|++|++++|.....
T Consensus 20 ~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 20 DCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp ECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred ecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 55665 7888887664 89999999999997654 689999999999999654444455678899999999999755444
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCcc-ccccCCCCcEE
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPE-WFSNQSSGSLL 140 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~-~f~~~~~~~~l 140 (305)
.+..+..+++|++|+|++|.++++.+..+..+.+|. .+..+.+.+ +|. +|........+
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTL 160 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEE
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEE
Confidence 446678899999999999999988333456566554 444444443 443 56544443333
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=8.7e-12 Score=107.16 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=93.7
Q ss_pred CeecCCCCCcccCC--C---cCCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ--I---SGNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~--~---~~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.++. . +.+|+.|+|++|.|+.+|. .+..+++|+.|+|++|......|..+..+++|++|++++|
T Consensus 37 L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 37 LRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 578888 6777743 2 3489999999999998876 7999999999999996544444456889999999999998
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
......|..+..+++|+.|+|++|.++++.|..+..+.++.
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 76666688899999999999999999999777777766554
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=3.1e-11 Score=105.46 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=99.9
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCcccCc-cccCCCCCCEEeccccccccccc-ccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.++. .+ .+|+.|+|++|.|+.++. .+..+++|+.|+|++|+ +..+| ..+..+++|++|++++|
T Consensus 40 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 40 LDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC
Confidence 578888 5555554 33 489999999999997755 57999999999999964 55555 55788999999999997
Q ss_pred CCCcccCc-cccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEEEc
Q 044640 75 LNLESFPE-SLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTLQM 144 (305)
Q Consensus 75 ~~l~~lP~-~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~l 144 (305)
. +..+|. .+..+++|+.|+|++|.++++.|..+..+.+|. ++..+.+.+ ..|..|....... .+++
T Consensus 118 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~--~L~l 186 (251)
T 3m19_A 118 Q-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQ--TITL 186 (251)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC--EEEC
T ss_pred c-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCC--EEEe
Confidence 4 556654 468899999999999999999444677766665 455555543 2334565443444 4444
No 20
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=5.6e-13 Score=134.07 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=67.5
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l 77 (305)
|+|++| .+..+|..+. +|+.|+|++|.|+.+|.+|+.|++|+.|+|++| .+..+|..++.|++|++|+|++| .+
T Consensus 229 L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l 305 (727)
T 4b8c_D 229 LDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MV 305 (727)
T ss_dssp EECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CC
T ss_pred EECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CC
Confidence 456666 4556665432 566677777777777766777777777777764 34566766777777777777764 45
Q ss_pred cccCccccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 78 ESFPESLEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 78 ~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
..+|..++.+++|+.|+|++|.+++..|..+
T Consensus 306 ~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 5667667777777777777777666534433
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=3.6e-11 Score=106.24 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=105.6
Q ss_pred CCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEeccccccccccc-ccccccccccEEEEEecCCCcccCccc
Q 044640 8 NLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCLNLESFPESL 84 (305)
Q Consensus 8 ~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~~l~~lP~~~ 84 (305)
.++++|..+. +|+.|+|++|.|+.+|. .+..+++|+.|++++| .+..++ ..+..+++|++|++++|......|..+
T Consensus 18 ~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 5677888665 79999999999998876 7899999999999996 455555 478899999999999976655556788
Q ss_pred cCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 85 EKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 85 ~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
..+++|+.|++++|.+.++.+..+..+.+|. .+..+.+.+-.+|.+|........+.+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 9999999999999999998444677766665 455556655557899987655555444
No 22
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1e-11 Score=102.99 Aligned_cols=106 Identities=21% Similarity=0.317 Sum_probs=84.7
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l 77 (305)
++++++ .++.+|..+. +|+.|+|++|.|+.+ |..++.+++|+.|+|++| .+..+|.. +..+++|+.|++++| .+
T Consensus 17 l~~~~n-~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l 93 (174)
T 2r9u_A 17 VNCQNI-RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HL 93 (174)
T ss_dssp EECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCC-CCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-cc
Confidence 356776 7888987554 899999999999977 567899999999999985 67777765 478999999999985 55
Q ss_pred cccCcc-ccCCCCCcEeeecCCCcCeeCCCCccc
Q 044640 78 ESFPES-LEKMEHLNQINLGRAKITEQRPSSFEN 110 (305)
Q Consensus 78 ~~lP~~-~~~l~~L~~L~L~~n~i~~l~P~si~~ 110 (305)
..+|.. +..+++|+.|+|++|.+... |..+..
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~-~~~~~~ 126 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE-CRDIMY 126 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT-BGGGHH
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc-cccHHH
Confidence 666654 88899999999999998877 554443
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=4.1e-11 Score=106.43 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=85.7
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCccc-CccccCCCCCCEEecccccccccc-cccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRV-STSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|. .+ .+|+.|+|++|.|+.+ |..+..+++|+.|++++|..+..+ |..+..+++|++|++++|
T Consensus 37 L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 37 IFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 467777 6667764 23 3788899999998876 677888999999999987656666 667788888899988887
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
......|..+..+++|++|++++|.+..+.+..+..+.+|.
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 66555567778888888888888888887333455555443
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=1.6e-11 Score=101.21 Aligned_cols=100 Identities=26% Similarity=0.395 Sum_probs=82.2
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCC
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l 77 (305)
|+++++ .++.+|..+. +|+.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|.. +..+++|++|++++| .+
T Consensus 14 l~~s~n-~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l 90 (170)
T 3g39_A 14 VDCSGK-SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QL 90 (170)
T ss_dssp EECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCC-CcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-cc
Confidence 467776 7888997654 899999999999987 567899999999999995 56677765 578999999999996 45
Q ss_pred cccCc-cccCCCCCcEeeecCCCcCee
Q 044640 78 ESFPE-SLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 78 ~~lP~-~~~~l~~L~~L~L~~n~i~~l 103 (305)
..+|. .+..+++|+.|+|++|.+...
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 56665 588899999999999988876
No 25
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=7.1e-11 Score=100.02 Aligned_cols=135 Identities=21% Similarity=0.274 Sum_probs=97.1
Q ss_pred ecCCCCCcccCCCcC-CccEEEEecCCCcccCcc-ccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCCcc
Q 044640 3 FSSCVNLTEFPQISG-NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 3 Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l~~ 79 (305)
.+++ .++.+|..+. +|+.|+|++|.|+.+|.. ++.+++|+.|++++| .+..+|.. +..+++|++|++++|. +..
T Consensus 14 c~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 90 (208)
T 2o6s_A 14 CYSQ-GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQS 90 (208)
T ss_dssp CCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred ecCC-CccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCc
Confidence 3444 6778886654 899999999999988765 689999999999995 56666654 5789999999999975 445
Q ss_pred cC-ccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCcc-ccccCCCCcEEEEEc
Q 044640 80 FP-ESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPE-WFSNQSSGSLLTLQM 144 (305)
Q Consensus 80 lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~-~f~~~~~~~~l~i~l 144 (305)
+| ..++.+++|+.|++++|.++++.+..+..+.+|. .+..+.+.+ +|. .|....... .+++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~--~L~l 155 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQ--YIWL 155 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCC--EEEC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce--eCHHHhccCCCcc--EEEe
Confidence 55 4578899999999999999998343456666554 444444443 443 454443334 4444
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=5.2e-12 Score=125.08 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=51.3
Q ss_pred ccCccccCCCCCCEEeccccccccc-----------------cccccc--ccccccEEEEEecCCCcccCccccCCCCCc
Q 044640 31 EVPSSIECLTNLTLLTISRCTRLKR-----------------VSTSIC--KLKSLIWLSVHGCLNLESFPESLEKMEHLN 91 (305)
Q Consensus 31 ~lP~si~~L~~L~~L~L~~c~~l~~-----------------lP~~i~--~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~ 91 (305)
.+|..++++++|+.|+|++|..... +|..++ ++++|++|++++|...+.+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4666666677777777766542222 666666 667777777776666666666666666777
Q ss_pred EeeecCCC-cCe-eCCCCcccc
Q 044640 92 QINLGRAK-ITE-QRPSSFENE 111 (305)
Q Consensus 92 ~L~L~~n~-i~~-l~P~si~~l 111 (305)
+|++++|. +++ .+|..++.+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHH
T ss_pred EEECcCCCCCccccchHHHHhh
Confidence 77777666 665 226555544
No 27
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=6.1e-11 Score=109.30 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=94.1
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccCcc-cc-CCCCCCEEeccccccccccc-ccccccccccEEEEEecCCC
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPSS-IE-CLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~s-i~-~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~~l 77 (305)
+++++ .++.+|..+. .++.|+|++|.|+.+|.. +. .+++|+.|+|++| .+..++ ..+..+++|+.|++++|. +
T Consensus 24 ~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l 100 (361)
T 2xot_A 24 SCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-L 100 (361)
T ss_dssp ECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred EeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-C
Confidence 45665 7888997665 788999999999988765 44 8999999999985 555555 568889999999999965 4
Q ss_pred cccC-ccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccc
Q 044640 78 ESFP-ESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEW 130 (305)
Q Consensus 78 ~~lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~ 130 (305)
..+| ..+..+.+|+.|+|++|.+..+.|..+..+.+|. .+..+.+. .+|.+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~ 154 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVE 154 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCGG
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC--eeCHH
Confidence 5554 4688899999999999999988667777776665 44444443 35654
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=4.4e-11 Score=122.11 Aligned_cols=141 Identities=19% Similarity=0.204 Sum_probs=107.9
Q ss_pred eecCCCCCcccCCCcCCccEEEEecCCCccc-CccccCCCCCCEEecccccccccc-cccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISGNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRV-STSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+.+++ +++.+|....+++.|+|++|.|+.+ |.++.++++|+.|+|++|.....+ |..+.++++|++|++++|.....
T Consensus 10 dcs~~-~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 10 FYRFC-NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp EESCC-CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred EccCC-CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 34555 7889999556899999999999966 778999999999999998777777 67888999999999999876666
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCC--ccccccCC--CCCccccCCCCCccccccCCCCcEEEEE
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSS--FENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTLQ 143 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~s--i~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~ 143 (305)
.|..++.+++|++|+|++|.+.+..|.. +..+++|. ++..+.+.+...|..|...+....+.+.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 6889999999999999999988743544 66666665 4445555554445667665555555553
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=3.5e-11 Score=103.34 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=93.0
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCccc-CccccCCCCCCEEeccccccccccccc-ccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|. .+ .+|+.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|.. +..+++|+.|++++|
T Consensus 37 L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 37 IRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp EECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC
Confidence 578888 6777775 33 3899999999999977 788999999999999995 67778765 578999999999998
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
......|..+..+++|+.|+|++|.++++.+..+..+.++.
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 76666678899999999999999999999444566555443
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=4.1e-11 Score=103.47 Aligned_cols=112 Identities=21% Similarity=0.380 Sum_probs=91.3
Q ss_pred CeecCCCCCccc-CCCc---CCccEEEEecCCCcccCcc-ccCCCCCCEEeccccccccccccc-ccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEF-PQIS---GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~-P~~~---~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c 74 (305)
|+|++| .+..+ |..+ .+|+.|+|++|.|+.+|.. +..+++|+.|+|++| .+..+|.. +..+++|+.|++++|
T Consensus 45 L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 45 LYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC
Confidence 578888 55555 4444 3899999999999999865 589999999999995 56667654 678999999999996
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
.+..+|..+..+++|+.|+|++|.++.+.+..+..+.+|.
T Consensus 123 -~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 123 -KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp -CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred -cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 5679999999999999999999999998334566555554
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=6e-11 Score=99.85 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
+|+.|++++|.|+.+| .+..+++|+.|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 5667777777777666 5666777777777765 444433 456667777777777655444566666677777777777
Q ss_pred CCcCeeCCCCccccccCC
Q 044640 98 AKITEQRPSSFENERGRL 115 (305)
Q Consensus 98 n~i~~l~P~si~~l~~l~ 115 (305)
|.+....|..+..+++|.
T Consensus 122 n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVN 139 (197)
T ss_dssp SBCBGGGHHHHTTCSSCC
T ss_pred CccCcHhHHHHhhCCCCC
Confidence 766653344444444443
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=2.5e-11 Score=102.23 Aligned_cols=135 Identities=19% Similarity=0.142 Sum_probs=98.9
Q ss_pred CeecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|++++| .++.+|.. +.+|+.|++++|.++.++ .+..+++|+.|++++|......|..+..+++|++|++++|....
T Consensus 49 L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 49 ITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp EEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred EeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 567887 67788843 238999999999887665 78889999999999976555578888899999999999987766
Q ss_pred ccCccccCCCCCcEeeecCCC-cCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 79 SFPESLEKMEHLNQINLGRAK-ITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~-i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
..|..++.+++|++|++++|. +..+ | .+..+++|. .+..+.+.+ +| .+........+.+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEE
T ss_pred HhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEe
Confidence 678888899999999999998 7776 6 566666554 333444433 44 3444444444444
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.22 E-value=4.1e-11 Score=103.72 Aligned_cols=107 Identities=19% Similarity=0.366 Sum_probs=86.7
Q ss_pred CCCCcccCCCcCCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccC-c
Q 044640 6 CVNLTEFPQISGNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFP-E 82 (305)
Q Consensus 6 c~~l~~~P~~~~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP-~ 82 (305)
|..++++|....+|+.|+|++|.|+.+|. .++.+++|+.|++++|+.+..+|. .+.++++|++|++++|+.+..+| .
T Consensus 20 c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp ECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 55688899843489999999999998877 688999999999999755777775 67889999999999866777776 4
Q ss_pred cccCCCCCcEeeecCCCcCeeCCCCccccccC
Q 044640 83 SLEKMEHLNQINLGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l 114 (305)
.+..+++|+.|++++|.++++ |. +..+.++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~l-p~-~~~l~~L 129 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMF-PD-LTKVYST 129 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSC-CC-CTTCCBC
T ss_pred HhCCCCCCCEEeCCCCCCccc-cc-ccccccc
Confidence 678899999999999999887 76 5555444
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=6.2e-11 Score=105.25 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=95.5
Q ss_pred CeecCCCCCccc-CCCcC---CccEEEEecCC-Cccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEF-PQISG---NIKTLYLFETA-IEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~-P~~~~---~L~~L~L~~n~-i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+ |..+. +|+.|+|++|. ++.+ |..+..+++|+.|++++|......|..+..+++|++|++++|
T Consensus 61 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 61 LWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 467777 55665 44443 78899999997 8877 677889999999999986544444677888899999999987
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEE
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLT 141 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~ 141 (305)
......+..++.+++|+.|++++|.++++.+..+..+.+|. .+..+.+.+ ..|.+|........+.
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLY 207 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEE
T ss_pred cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEee
Confidence 54433334578888999999999999888333466665554 333343433 2366775544444333
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.22 E-value=1e-10 Score=103.18 Aligned_cols=111 Identities=26% Similarity=0.377 Sum_probs=82.3
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCCc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l~ 78 (305)
+++++ .++.+|..+. +++.|+|++|.|+.+|. .+..+++|+.|++++| .+..+|.. +..+++|++|++++|. +.
T Consensus 22 ~~~~~-~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~ 98 (270)
T 2o6q_A 22 DCSSK-KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQ 98 (270)
T ss_dssp ECTTS-CCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CC
T ss_pred EccCC-CCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CC
Confidence 45665 6778887554 78899999999988775 6888899999999884 56667665 4678889999988865 44
Q ss_pred ccC-ccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 79 SFP-ESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 79 ~lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
.+| ..+..+++|++|++++|.++.+.|..+..+.+|.
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 444 4567788888888888888887444455555554
No 36
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1.6e-11 Score=120.05 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=64.4
Q ss_pred CeecCCCCCcccCCCc--CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .++.+|... .+|+.|+|++|.|+.+|..++.+++|+.|+|++| .+..+| .++.+++|+.|++++|. +.
T Consensus 446 L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~-l~ 521 (567)
T 1dce_A 446 LHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR-LQ 521 (567)
T ss_dssp EECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC-CC
T ss_pred EEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCC-CC
Confidence 456666 566666521 2566677777777777777777777777777763 455566 56666777777776653 33
Q ss_pred cc--CccccCCCCCcEeeecCCCcCeeCCCC
Q 044640 79 SF--PESLEKMEHLNQINLGRAKITEQRPSS 107 (305)
Q Consensus 79 ~l--P~~~~~l~~L~~L~L~~n~i~~l~P~s 107 (305)
.+ |..++.+++|+.|+|++|.++++ |..
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~ 551 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQE-EGI 551 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGS-SSC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCC-ccH
Confidence 33 66666677777777777776666 443
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=1.2e-10 Score=102.86 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=86.4
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCcccCccc-cCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEVPSSI-ECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~lP~si-~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|. .+ .+|+.|+|++|.|+.+|..+ ..+++|+.|++++| .+..+|. .+..+++|++|++++|
T Consensus 42 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 42 LDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS
T ss_pred EECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC
Confidence 577887 6777775 33 37899999999999888765 78999999999985 4556654 4678899999999997
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
......|..++.+++|++|+|++|.++++.+..+..+.+|.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 65554556678899999999999999988333356565554
No 38
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=8.1e-12 Score=125.64 Aligned_cols=96 Identities=22% Similarity=0.149 Sum_probs=87.3
Q ss_pred CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeec
Q 044640 17 GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLG 96 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~ 96 (305)
.+|+.|+|++|.|..+|..+..+++|+.|+|++| .+..+|..+++|++|++|+|++|. +..+|..++.|.+|++|+|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECC
Confidence 3789999999999999999999999999999995 566999999999999999999975 55999999999999999999
Q ss_pred CCCcCeeCCCCccccccCC
Q 044640 97 RAKITEQRPSSFENERGRL 115 (305)
Q Consensus 97 ~n~i~~l~P~si~~l~~l~ 115 (305)
+|.+..+ |..|+.+.+|.
T Consensus 302 ~N~l~~l-p~~~~~l~~L~ 319 (727)
T 4b8c_D 302 DNMVTTL-PWEFGNLCNLQ 319 (727)
T ss_dssp SSCCCCC-CSSTTSCTTCC
T ss_pred CCCCCcc-ChhhhcCCCcc
Confidence 9999988 98888876654
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=9.9e-11 Score=103.51 Aligned_cols=110 Identities=19% Similarity=0.343 Sum_probs=55.4
Q ss_pred eecCCCCCcccCCCc--CCccEEEEecCCCcccCcc-ccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCC
Q 044640 2 DFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNL 77 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l 77 (305)
+|++| .++.++... .+|+.|+|++|.|+.+|.. ++.+++|+.|++++|+ +..+|. .+..+++|++|++++|..
T Consensus 69 ~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l- 145 (272)
T 3rfs_A 69 ALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQL- 145 (272)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred ECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCcc-
Confidence 44554 344443221 2556666666666655443 4556666666666643 333332 345566666666666533
Q ss_pred cccC-ccccCCCCCcEeeecCCCcCeeCCCCccccccC
Q 044640 78 ESFP-ESLEKMEHLNQINLGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 78 ~~lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l 114 (305)
..+| ..++.+++|+.|++++|.++++.|..+..+.+|
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 3333 334556666666666666665522233444443
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.20 E-value=1.2e-11 Score=122.63 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=79.0
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCC-Cc--ccCccccCC------CCCCEEecccccccccccc--cccccccc
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETA-IE--EVPSSIECL------TNLTLLTISRCTRLKRVST--SICKLKSL 66 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~-i~--~lP~si~~L------~~L~~L~L~~c~~l~~lP~--~i~~l~~L 66 (305)
|+|++|...+.+|..++ +|+.|+|++|. ++ .+|..++.+ ++|+.|++++|+ +..+|. .++++++|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L 332 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKL 332 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTC
T ss_pred EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCC
Confidence 34555555555665443 45556666665 55 356655554 566666666643 335665 56666666
Q ss_pred cEEEEEecCCCcccCccccCCCCCcEeeecCCCcCeeCCCCcccccc-CC--CCCccccCCCCCccccccCCCCcEEEEE
Q 044640 67 IWLSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERG-RL--GGPSIILPGSEIPEWFSNQSSGSLLTLQ 143 (305)
Q Consensus 67 ~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~-l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~ 143 (305)
+.|++++|...+.+| .++.+++|+.|++++|.+..+ |..+..+.+ |. .+..+.+. ++|.+|...+..+...++
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEE
T ss_pred CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc-cHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEE
Confidence 666666654444566 555566666666666666655 665655555 54 33334443 577776554444555566
Q ss_pred cCC
Q 044640 144 MPQ 146 (305)
Q Consensus 144 lp~ 146 (305)
+..
T Consensus 409 Ls~ 411 (636)
T 4eco_A 409 FSY 411 (636)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=9.2e-11 Score=96.86 Aligned_cols=119 Identities=22% Similarity=0.297 Sum_probs=90.4
Q ss_pred eecCCCCCcccCCCc-CCccEEEEecCCCcccCcc-ccCCCCCCEEeccccccccccccc-ccccccccEEEEEecCCCc
Q 044640 2 DFSSCVNLTEFPQIS-GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~-~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c~~l~ 78 (305)
+++++ .++.+|..+ .+|+.|+|++|.++.+|.. ++.+++|+.|++++| .+..+|.. +..+++|+.|++++|. +.
T Consensus 13 ~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 89 (177)
T 2o6r_A 13 RCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQ 89 (177)
T ss_dssp ECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred EecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-cc
Confidence 45665 688888655 4899999999999988765 589999999999995 56666654 6789999999999975 44
Q ss_pred ccC-ccccCCCCCcEeeecCCCcCeeCCCC-ccccccCC--CCCccccCC
Q 044640 79 SFP-ESLEKMEHLNQINLGRAKITEQRPSS-FENERGRL--GGPSIILPG 124 (305)
Q Consensus 79 ~lP-~~~~~l~~L~~L~L~~n~i~~l~P~s-i~~l~~l~--~l~~~~lpG 124 (305)
.+| ..++.+++|+.|++++|.++++ |.. +..+.++. .+..+.+.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeec
Confidence 555 4578899999999999999988 654 45555544 344444443
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.19 E-value=7.9e-11 Score=115.25 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=80.8
Q ss_pred CCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCcccc
Q 044640 8 NLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLE 85 (305)
Q Consensus 8 ~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~ 85 (305)
.++.+|..+. +++.|+|++|.|+.+ |..++.+++|++|+|++|......|..+.++++|++|++++|......|..++
T Consensus 23 ~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 23 GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 5677887554 788888888888866 56788888888888888655555577788888888888888766666677788
Q ss_pred CCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 86 KMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 86 ~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
.+++|++|++++|.++++.|..+..+.+|.
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred ccccccEeeccccCcccCCcchhccCCccc
Confidence 888888888888888776455555555443
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.19 E-value=2.8e-11 Score=108.55 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccc--cccccccccEEEEEecCCCcccCccccCCCCCcEee
Q 044640 17 GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVST--SICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQIN 94 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~--~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~ 94 (305)
.+|+.|+|++|.++.+|..+..+++|+.|++++| .+..++. .+..+++|++|++++|......|..+..+++|+.|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 3677777777777777776777777777777764 3444442 455666666666666554444555556666666666
Q ss_pred ecCCCcCe-eCCCCccccccC
Q 044640 95 LGRAKITE-QRPSSFENERGR 114 (305)
Q Consensus 95 L~~n~i~~-l~P~si~~l~~l 114 (305)
+++|.+.+ ..|..+..++++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCccccccchhHHhhCcCC
Confidence 66666654 225555544444
No 44
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=5.8e-11 Score=99.74 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=86.2
Q ss_pred CeecCCCCCcccCCC--c---CCccEEEEecCCCccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQI--S---GNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~---~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|.. + .+|+.|+|++|.|+.+ |..+..+++|+.|+|++|+.....|..+..+++|++|++++|
T Consensus 34 L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 34 LLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp EECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred EECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 578888 67777753 3 4899999999999977 778999999999999996544444455889999999999998
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCee
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
......|..+..+++|++|+|++|.+.+.
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 113 QISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777789999999999999999999875
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.8e-11 Score=98.25 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=42.9
Q ss_pred CccEEEEecCCCc--ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeee
Q 044640 18 NIKTLYLFETAIE--EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~n~i~--~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L 95 (305)
+|+.|++++|.++ .+|..+..+++|+.|++++| .+..+ ..+..+++|++|++++|.....+|..++.+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4555555555555 45555555555555555553 33333 34445555555555554433334444444555555555
Q ss_pred cCCCcCee
Q 044640 96 GRAKITEQ 103 (305)
Q Consensus 96 ~~n~i~~l 103 (305)
++|.++++
T Consensus 96 s~N~i~~~ 103 (149)
T 2je0_A 96 SGNKIKDL 103 (149)
T ss_dssp TTSCCCSH
T ss_pred CCCcCCCh
Confidence 55555543
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=2e-10 Score=99.37 Aligned_cols=111 Identities=19% Similarity=0.314 Sum_probs=90.8
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCC-CcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEe
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETA-IEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHG 73 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~-i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~ 73 (305)
|+|++| .++.+|. .+ .+|+.|+|++|. ++.+|. .+..+++|+.|++++|+.+..+|. .+..+++|+.|++++
T Consensus 36 L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 36 LKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 578888 7888886 33 489999999997 998876 689999999999999677888874 678899999999999
Q ss_pred cCCCcccCccccCCCCCc---EeeecCC-CcCeeCCCCccccccC
Q 044640 74 CLNLESFPESLEKMEHLN---QINLGRA-KITEQRPSSFENERGR 114 (305)
Q Consensus 74 c~~l~~lP~~~~~l~~L~---~L~L~~n-~i~~l~P~si~~l~~l 114 (305)
|. +..+|. ++.+.+|+ .|++++| .++.+.+..+..+.++
T Consensus 115 n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 115 TG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp EC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred CC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 75 666887 88888888 9999999 9999833446655544
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=1.7e-10 Score=103.20 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=95.0
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+++++ .++.+|..+. +++.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|.. ..+++|++|++++| .+.
T Consensus 15 l~~~~~-~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~ 90 (290)
T 1p9a_G 15 VNCDKR-NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQ 90 (290)
T ss_dssp EECTTS-CCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCS
T ss_pred EECCCC-CCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCC
Confidence 356665 7888987654 899999999999976 567899999999999995 57777764 78999999999995 677
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILP 123 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lp 123 (305)
.+|..+..+++|++|++++|.++++.|..+..+.+|. .+..+.+.
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 8999999999999999999999998445677666654 34444443
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=109.39 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=47.1
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.++. .+ .+|+.|+|++|.|+.+|. .+..+++|+.|+|++| .+..+|. .+..+++|+.|++++|
T Consensus 93 L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 93 LQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp EECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC
T ss_pred EECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCC
Confidence 345555 3444442 11 255566666666665544 3555556666666553 2333332 3444455555555554
Q ss_pred CCCcccCc-cccCCCCCcEeeecCCCcCe
Q 044640 75 LNLESFPE-SLEKMEHLNQINLGRAKITE 102 (305)
Q Consensus 75 ~~l~~lP~-~~~~l~~L~~L~L~~n~i~~ 102 (305)
+.+..+|. .+..+++|+.|+|++|.++.
T Consensus 171 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 171 KRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp TTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcceeCcchhhcccccCeecCCCCcCcc
Confidence 44444443 23344444444444444433
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=4e-11 Score=122.59 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=83.7
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCC-Cc--ccCccccCCC-------CCCEEecccccccccccc--ccccccc
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETA-IE--EVPSSIECLT-------NLTLLTISRCTRLKRVST--SICKLKS 65 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~-i~--~lP~si~~L~-------~L~~L~L~~c~~l~~lP~--~i~~l~~ 65 (305)
|+|++|...+.+|..++ +|+.|+|++|. ++ .+|..++.++ +|+.|+|++|+ +..+|. .++++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCC
Confidence 45666655666665443 56666666665 55 3666555544 66666666643 336666 6666777
Q ss_pred ccEEEEEecCCCcccCccccCCCCCcEeeecCCCcCeeCCCCcccccc-CC--CCCccccCCCCCccccccCCCCcEEEE
Q 044640 66 LIWLSVHGCLNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERG-RL--GGPSIILPGSEIPEWFSNQSSGSLLTL 142 (305)
Q Consensus 66 L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~-l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i 142 (305)
|+.|++++|.. ..+| .++.+++|+.|+|++|.+..+ |..+..+.+ |. .+..+.+. .+|.+|......+...+
T Consensus 575 L~~L~Ls~N~l-~~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKV-RHLE-AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCC-CBCC-CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEE
T ss_pred CCEEECCCCCc-ccch-hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEE
Confidence 77777766543 3666 666667777777777777655 666666555 54 33344443 56777655444445556
Q ss_pred EcCC
Q 044640 143 QMPQ 146 (305)
Q Consensus 143 ~lp~ 146 (305)
++..
T Consensus 650 ~Ls~ 653 (876)
T 4ecn_A 650 DFSY 653 (876)
T ss_dssp ECCS
T ss_pred ECcC
Confidence 6543
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=1.8e-10 Score=97.52 Aligned_cols=112 Identities=22% Similarity=0.382 Sum_probs=86.9
Q ss_pred CeecCCCCCcccCCC-c---CCccEEEEecCCCcccCcc-ccCCCCCCEEeccccccccccccc-ccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQI-S---GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-~---~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|.. + .+|+.|+|++|.|+.+|.. +..+++|+.|++++| .+..+|.. +..+++|++|++++|
T Consensus 33 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 33 LDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC
Confidence 578888 66777753 2 4899999999999988775 589999999999995 56666654 678999999999997
Q ss_pred CCCcccCc-cccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPE-SLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~-~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
. +..+|. .+..+++|+.|++++|.++++.+..+..+.++.
T Consensus 111 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 111 Q-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred c-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 5 455554 578899999999999999988333355555443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.14 E-value=1.2e-10 Score=104.42 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=86.6
Q ss_pred CeecCCCCCcccCCCc---CCccEEEEecCCCcccCc--cccCCCCCCEEecccccccccccccccccccccEEEEEecC
Q 044640 1 IDFSSCVNLTEFPQIS---GNIKTLYLFETAIEEVPS--SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~---~~L~~L~L~~n~i~~lP~--si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~ 75 (305)
|+|++| .++.+|..+ .+|+.|+|++|.++.+|. .+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 83 L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 467777 666777644 378888998888887764 67888888888888876555666777788888888888875
Q ss_pred CCc-ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 76 NLE-SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 76 ~l~-~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
... .+|..+..+++|+.|++++|.++++.|..+..+++|.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 544 4788888888888888888888887566666665554
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=6.7e-11 Score=120.93 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=108.8
Q ss_pred CeecCCCCCcc------------------cCCCcC-----CccEEEEecCCCc-ccCccccCCCCCCEEecccccccc--
Q 044640 1 IDFSSCVNLTE------------------FPQISG-----NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLK-- 54 (305)
Q Consensus 1 L~Ls~c~~l~~------------------~P~~~~-----~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~-- 54 (305)
|+|++| .+.. +|..++ +|+.|+|++|.+. .+|..++++++|+.|+|++|+.+.
T Consensus 453 L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 453 IYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp EEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred EECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence 578888 4555 888653 7899999999876 899999999999999999986344
Q ss_pred cccccccccc-------cccEEEEEecCCCcccCc--cccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccC
Q 044640 55 RVSTSICKLK-------SLIWLSVHGCLNLESFPE--SLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILP 123 (305)
Q Consensus 55 ~lP~~i~~l~-------~L~~L~l~~c~~l~~lP~--~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lp 123 (305)
.+|..++.++ +|+.|++++|... .+|. .++++++|+.|+|++|.+..+ | .+..+.+|. .+..+.+.
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL-E-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-C-CCCTTSEESEEECCSSCCS
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc-h-hhcCCCcceEEECcCCccc
Confidence 6898887776 9999999997654 9999 899999999999999999977 8 777776665 45555554
Q ss_pred CCCCccccccCCC-CcEEEE
Q 044640 124 GSEIPEWFSNQSS-GSLLTL 142 (305)
Q Consensus 124 G~~iP~~f~~~~~-~~~l~i 142 (305)
.+|.+|..... ...+.+
T Consensus 609 --~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 609 --EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp --CCCTTSCEECTTCCEEEC
T ss_pred --cchHHHhhccccCCEEEC
Confidence 68888866554 444443
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.13 E-value=7.7e-11 Score=115.33 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=47.6
Q ss_pred CccEEEEecCCCcccC--ccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc-ccCccccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVP--SSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE-SFPESLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP--~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~-~lP~~~~~l~~L~~L~ 94 (305)
+|+.|++++|.+..++ ..+..+++|+.|++++|......|..+..+++|++|++++|.... .+|..++.+++|+.|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 3444555555444332 234455555555555544334444445555555555555544333 2455555555555555
Q ss_pred ecCCCcCeeCCCCccccccC
Q 044640 95 LGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 95 L~~n~i~~l~P~si~~l~~l 114 (305)
+++|.++++.|..+..+++|
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTC
T ss_pred CCCCcCCccChhhhcccccC
Confidence 55555555544444444444
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=1.4e-10 Score=106.88 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=87.6
Q ss_pred CeecCCCCCcccCCC-----cCCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEe
Q 044640 1 IDFSSCVNLTEFPQI-----SGNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHG 73 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-----~~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~ 73 (305)
|+|++| .++.+|.. +.+|+.|+|++|.|+.+|. .+..+++|+.|+|++| .+..+|. .+..+++|+.|++++
T Consensus 44 L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 44 LDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp EECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC
Confidence 578898 67777753 3489999999999998875 6899999999999995 4666655 578899999999999
Q ss_pred cCCCcccCccccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 74 CLNLESFPESLEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 74 c~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
|......|..+..+++|+.|+|++|.++.+ |..+
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~ 155 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRF-PVEL 155 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSC-CGGG
T ss_pred CcccEECHHHhCCcccCCEEECCCCcCCee-CHHH
Confidence 876655678899999999999999999998 7654
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=5.7e-11 Score=98.18 Aligned_cols=101 Identities=15% Similarity=0.288 Sum_probs=66.9
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccc-cccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSI-CKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i-~~l~~L~~L~l~~c~~ 76 (305)
|+|++| .++.+|.... +|+.|+|++|.|+.+ ..++.+++|+.|++++| .+..+|..+ ..+++|++|++++| .
T Consensus 24 L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 24 LDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-S 99 (176)
T ss_dssp EECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred EEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-c
Confidence 456666 5556654332 677777777777766 56777777777777774 455666444 66777777777775 4
Q ss_pred CcccCc--cccCCCCCcEeeecCCCcCeeCCC
Q 044640 77 LESFPE--SLEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 77 l~~lP~--~~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
+..+|. .+..+++|+.|++++|.+..+ |.
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~ 130 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNPVTNK-KH 130 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSGGGGS-TT
T ss_pred CCcchhhHhhhcCCCCCEEEecCCCCCCc-Hh
Confidence 466665 566777777777777777766 55
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.13 E-value=2.1e-10 Score=113.75 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=75.1
Q ss_pred eecCCCCCcccCCCc-CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQIS-GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~-~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+.+++ .++.+|..+ .+++.|+|++|.|+.+|. .++.+++|+.|++++|......|..+.++++|++|++++| .+..
T Consensus 10 ~cs~~-~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 87 (680)
T 1ziw_A 10 DCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQ 87 (680)
T ss_dssp ECCSS-CCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCC
T ss_pred ECCCC-CccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCc
Confidence 34444 677777655 378888888888887665 4777888888888876544444666777777777777775 3445
Q ss_pred cCc-cccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 80 FPE-SLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 80 lP~-~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
+|. .++.+++|++|++++|.+.++.|..++.+.+|.
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 554 467777777777777777776345565555443
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.12 E-value=3.4e-10 Score=109.60 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=95.8
Q ss_pred CCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccc-cccccccccccEEEEEecCCCcccCccc
Q 044640 8 NLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRV-STSICKLKSLIWLSVHGCLNLESFPESL 84 (305)
Q Consensus 8 ~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L~l~~c~~l~~lP~~~ 84 (305)
.++.+|..+. +++.|+|++|.|+.++. .+..+++|+.|++++|+ +..+ |..+.++++|++|++++|......|..+
T Consensus 18 ~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 5778887554 78899999999987754 68889999999999864 4445 4567888899999998876444445778
Q ss_pred cCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEE
Q 044640 85 EKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLT 141 (305)
Q Consensus 85 ~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~ 141 (305)
+.+++|++|++++|.++.+.+..++.+.+|. .+..+.+.+-++|..|........+.
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 8888899999988888887333566666665 44445555545777776655444443
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.12 E-value=1.7e-10 Score=108.91 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=88.6
Q ss_pred CccEEEEecCCCcc-cCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeec
Q 044640 18 NIKTLYLFETAIEE-VPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLG 96 (305)
Q Consensus 18 ~L~~L~L~~n~i~~-lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~ 96 (305)
+|+.|+|++|.+.. +|..++.+++|+.|++++|......|..+..+++|+.|++++|......|..++.+++|+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 68888888888884 46678888999999998865555556678888999999999876655557778888899999999
Q ss_pred CCCcCeeCCCCccccccCC--CCCccccCCCCCc-cccccCCCCcEEEE
Q 044640 97 RAKITEQRPSSFENERGRL--GGPSIILPGSEIP-EWFSNQSSGSLLTL 142 (305)
Q Consensus 97 ~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP-~~f~~~~~~~~l~i 142 (305)
+|.+.++.|..+..+++|. ++..+.+.+ +| .+|........+.+
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS--VPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEEC
T ss_pred CCcccccChhhccccccccEEECCCCcccc--CCHhHhccCCcccEEEc
Confidence 9998888677777766665 444444443 44 34544333443333
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.12 E-value=2.4e-10 Score=108.30 Aligned_cols=96 Identities=24% Similarity=0.457 Sum_probs=55.1
Q ss_pred CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccCccccCCCCCcEeee
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L 95 (305)
+|+.|+|++|.|+.+|. .+..+++|+.|++++|+.+..+|. .+..+++|+.|++++| .+..+|. +..+++|+.|+|
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L 225 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN-LTPLVGLEELEM 225 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC-CTTCTTCCEEEC
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc-ccccccccEEEC
Confidence 45555555555555543 345555555555555555555544 3455666666666664 3444443 455667777777
Q ss_pred cCCCcCeeCCCCccccccCC
Q 044640 96 GRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 96 ~~n~i~~l~P~si~~l~~l~ 115 (305)
++|.+.++.|..+..+.+|.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLK 245 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCC
T ss_pred cCCcCcccCcccccCccCCC
Confidence 77777777555555554443
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.12 E-value=1.5e-10 Score=102.23 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=86.7
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecC
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~ 75 (305)
|+|++| .++.+|. .+ .+|+.|+|++|.|+.++. .+..+++|+.|++++|......|..+.++++|++|++++|.
T Consensus 33 L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 33 LDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp EECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 578887 6777775 33 378999999999997765 68899999999999965444444678889999999999875
Q ss_pred CCcccCccccCCCCCcEeeecCCCcCee-CCCCccccccCC
Q 044640 76 NLESFPESLEKMEHLNQINLGRAKITEQ-RPSSFENERGRL 115 (305)
Q Consensus 76 ~l~~lP~~~~~l~~L~~L~L~~n~i~~l-~P~si~~l~~l~ 115 (305)
.....+..++.+++|++|++++|.+..+ +|..+..+.+|.
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 4444444688889999999999998873 277777766654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=106.89 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=88.3
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+++++ .++++|..+. +|+.|+|++|.|+.+|. .+..+++|+.|++++|+.....|..+.++++|++|++++| .+..
T Consensus 37 ~~~~~-~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 114 (353)
T 2z80_A 37 KGSSG-SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSN 114 (353)
T ss_dssp ECCST-TCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSS
T ss_pred eCCCC-CcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCc
Confidence 34554 7888997654 89999999999998877 7899999999999996444334567889999999999996 4556
Q ss_pred cCcc-ccCCCCCcEeeecCCCcCeeCCC--CccccccCC
Q 044640 80 FPES-LEKMEHLNQINLGRAKITEQRPS--SFENERGRL 115 (305)
Q Consensus 80 lP~~-~~~l~~L~~L~L~~n~i~~l~P~--si~~l~~l~ 115 (305)
+|.. ++.+++|++|++++|.++.+ |. .+..+++|.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~~l~~L~ 152 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQ 152 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSS-CSSCSCTTCTTCC
T ss_pred CCHhHhCCCccCCEEECCCCCCccc-CchhhhccCCCCc
Confidence 6655 78899999999999999988 65 566666554
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.11 E-value=1.3e-10 Score=113.60 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=85.6
Q ss_pred CeecCCCCCcccCCC-c---CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQI-S---GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-~---~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|||++| .++.+|.. + .+|++|+|++|.|+.+|+ .|..|++|++|+|++| .+..+|. .+.++++|++|++++|
T Consensus 57 LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 57 LDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS
T ss_pred EEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC
Confidence 688888 78888753 3 378999999999998865 5889999999999985 5777765 5788999999999987
Q ss_pred CCCcccC-ccccCCCCCcEeeecCCCcCee-CCCCccccccCC
Q 044640 75 LNLESFP-ESLEKMEHLNQINLGRAKITEQ-RPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP-~~~~~l~~L~~L~L~~n~i~~l-~P~si~~l~~l~ 115 (305)
+ +..+| ..++++++|++|+|++|.++.+ .|..+..+..|.
T Consensus 135 ~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 135 N-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp C-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred c-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 4 45555 4578888999999999888764 255555554443
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.11 E-value=2.6e-10 Score=107.59 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=98.9
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++|......|..++ +|+.|+|++|.|+.+ |..++.+++|+.|+|++|......|..+..+++|+.|++++|..
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 46677744444455543 899999999999976 66899999999999999755444577889999999999999877
Q ss_pred CcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCc
Q 044640 77 LESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIP 128 (305)
Q Consensus 77 l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP 128 (305)
....|..+..+++|++|++++|.++++.+..+..+++|. .+..+.+.+ .+|
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~ 412 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP 412 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CTT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc-CCC
Confidence 666688999999999999999999998333456666665 555566665 355
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.10 E-value=4.1e-10 Score=106.65 Aligned_cols=94 Identities=26% Similarity=0.418 Sum_probs=50.7
Q ss_pred CccEEEEecCCCcccCcc-ccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccCc-cccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFPE-SLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP~-~~~~l~~L~~L~ 94 (305)
+|+.|+|++|.|+.+|.. ++.+++|+.|+|++| .+..+|. .+.++++|+.|++++|+.++.+|. .+..+++|+.|+
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 444455555555544433 444555555555553 2333333 344555666666665555555554 356677777777
Q ss_pred ecCCCcCeeCCCCccccccC
Q 044640 95 LGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 95 L~~n~i~~l~P~si~~l~~l 114 (305)
|++|.++++ |. +..+.+|
T Consensus 203 L~~n~l~~~-~~-~~~l~~L 220 (452)
T 3zyi_A 203 LGMCNIKDM-PN-LTPLVGL 220 (452)
T ss_dssp CTTSCCSSC-CC-CTTCTTC
T ss_pred CCCCccccc-cc-ccccccc
Confidence 777777766 53 3333333
No 65
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.9e-10 Score=96.85 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=83.4
Q ss_pred CeecCCCCCcccCCCcC---CccEEEEecCCCcccCc-cccCCCCCCEEeccccccccccc-ccccccccccEEEEEecC
Q 044640 1 IDFSSCVNLTEFPQISG---NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~ 75 (305)
|+|++| .++.+|..+. +|+.|+|++|.|+.++. .+..+++|+.|+|++|. +..+| ..+..+++|+.|++++|
T Consensus 36 L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N- 112 (193)
T 2wfh_A 36 LYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN- 112 (193)
T ss_dssp EECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-
T ss_pred EECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-
Confidence 578888 7888986654 79999999999998865 68999999999999964 55555 57889999999999996
Q ss_pred CCcccCc-cccCCCCCcEeeecCCCcCee
Q 044640 76 NLESFPE-SLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 76 ~l~~lP~-~~~~l~~L~~L~L~~n~i~~l 103 (305)
.+..+|. .+..+++|+.|+|++|.+...
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 4556665 588899999999999988754
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.09 E-value=4.4e-10 Score=106.85 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCc-cc
Q 044640 8 NLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPE-SL 84 (305)
Q Consensus 8 ~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~-~~ 84 (305)
.++.+|..+. +++.|+|++|.|+.+ |..+..+++|+.|+|++|......|..+.++++|++|++++|. +..+|. .+
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred CcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 5667776543 677777777777765 3466777777777777754333336666777777777777653 444443 35
Q ss_pred cCCCCCcEeeecCCCcCeeCCCCcccccc
Q 044640 85 EKMEHLNQINLGRAKITEQRPSSFENERG 113 (305)
Q Consensus 85 ~~l~~L~~L~L~~n~i~~l~P~si~~l~~ 113 (305)
..+++|++|+|++|.+.++.|..+..+.+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCccccCChhHcccccc
Confidence 66667777777777666664444444433
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.09 E-value=2.4e-10 Score=109.76 Aligned_cols=111 Identities=19% Similarity=0.128 Sum_probs=90.2
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCcccC-ccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|++++| .++.+|..+. +|+.|+|++|.|+.+| ..+..+++|+.|+|++|+.....|..+.++++|++|++++| .+.
T Consensus 5 l~ls~n-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 82 (520)
T 2z7x_B 5 VDRSKN-GLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLV 82 (520)
T ss_dssp EECTTS-CCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCC
T ss_pred EecCCC-CcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-cee
Confidence 578888 7888998654 8999999999999776 57899999999999996544445788999999999999996 556
Q ss_pred ccCccccCCCCCcEeeecCCCcCee-CCCCccccccCC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ-RPSSFENERGRL 115 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l-~P~si~~l~~l~ 115 (305)
.+|.. .+++|++|+|++|.++++ .|..++.+++|.
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 78877 789999999999999874 367777765554
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.09 E-value=5e-10 Score=101.60 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=41.4
Q ss_pred CccEEEEecCCCcccCcc-ccCCCCCCEEeccccccc--ccccccccccccccEEEEEecCCCcccCccccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRL--KRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l--~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~ 94 (305)
+|+.|++++|.|+.+|.. +..+++|+.|++++|... ...|..+..+ +|+.|++++| .+..+|..+. ++|+.|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCB
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEE
Confidence 444444444444444332 444555555555543221 1223333333 3333333332 1222333221 4566666
Q ss_pred ecCCCcCeeCCCCccccccCC
Q 044640 95 LGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 95 L~~n~i~~l~P~si~~l~~l~ 115 (305)
+++|.++++.|..+..+.++.
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCS
T ss_pred CCCCcCCccCHHHhcCCCCCC
Confidence 666666666334555544443
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=1.4e-10 Score=112.30 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCccEEEEecCCCcccCccccCCCCCCEEeccccccccccc-ccccccccccEEEEEecCCCcccCccccCCCCCcEeee
Q 044640 17 GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINL 95 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L 95 (305)
.+|+.|+|++|.+..+|..+..+++|+.|++++|......| ..+..+++|++|++++|......|..+..+++|+.|++
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 36677777777777666666667777777776654333323 24556666666666666555555555666666666666
Q ss_pred cCCCcC-eeCCCCccccccCC
Q 044640 96 GRAKIT-EQRPSSFENERGRL 115 (305)
Q Consensus 96 ~~n~i~-~l~P~si~~l~~l~ 115 (305)
++|.+. +..|..+..+++|.
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCC
T ss_pred cCCcCccccchhhhhcccCCC
Confidence 666654 22255555544443
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.07 E-value=1.8e-10 Score=111.19 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=39.3
Q ss_pred CccEEEEecCCCcccC-ccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc-ccCccccCCCCCcEeee
Q 044640 18 NIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE-SFPESLEKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~-~lP~~~~~l~~L~~L~L 95 (305)
+|++|+|++|.|+.+| ..++.+++|+.|++++|......|..++++++|++|++++|.... ..|..++.+++|++|++
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 4555666666555443 345555555555555543222222234555555555555543222 23344444555555555
Q ss_pred cCCC
Q 044640 96 GRAK 99 (305)
Q Consensus 96 ~~n~ 99 (305)
++|.
T Consensus 131 ~~n~ 134 (549)
T 2z81_A 131 GNVE 134 (549)
T ss_dssp EESS
T ss_pred CCCc
Confidence 5444
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=4.8e-10 Score=106.60 Aligned_cols=113 Identities=17% Similarity=0.221 Sum_probs=89.2
Q ss_pred CeecCCCCCcccC-CCc---CCccEEEEecCCCccc-CccccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFP-QIS---GNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P-~~~---~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.++ ..+ .+|+.|+|++|.|+.+ |..++.+++|+.|+|++| .+..+|. .+.++++|++|++++|
T Consensus 37 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 37 LDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTS
T ss_pred EECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCC
Confidence 578887 666665 333 3789999999999966 778899999999999985 5667765 4678899999999998
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
......|..+..+++|+.|++++|.+..+.|..+..+.+|.
T Consensus 115 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 77666777888899999999999998888666666665554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.07 E-value=2.3e-10 Score=103.18 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=66.4
Q ss_pred CeecCCCCCcccCCCc-----CCccEEEEecCCCcccCccccCC-----CCCCEEecccccccccccccccccccccEEE
Q 044640 1 IDFSSCVNLTEFPQIS-----GNIKTLYLFETAIEEVPSSIECL-----TNLTLLTISRCTRLKRVSTSICKLKSLIWLS 70 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~-----~~L~~L~L~~n~i~~lP~si~~L-----~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~ 70 (305)
|+|++|.....+|..+ .+|+.|+|++|.|+.+|..++.+ ++|++|+|++|+.....|..++.+++|+.|+
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 4667774334566543 36777888888887667766666 7788888877544333336677777777777
Q ss_pred EEecCCCcc--cCccc--cCCCCCcEeeecCCCcCe
Q 044640 71 VHGCLNLES--FPESL--EKMEHLNQINLGRAKITE 102 (305)
Q Consensus 71 l~~c~~l~~--lP~~~--~~l~~L~~L~L~~n~i~~ 102 (305)
+++|...+. +|..+ +.+++|++|++++|.+++
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 777665443 23333 666777777777777764
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.06 E-value=6.8e-10 Score=108.55 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=66.4
Q ss_pred CeecCCCCCcccCCC-c---CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQI-S---GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-~---~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|++++| .++.+|.. + .+|+.|+|++|.++++|..++.+++|+.|++++|......|..+..+++|+.|++++|..
T Consensus 259 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 356666 55555543 2 367778888888888887777788888888887644444455666777777777777655
Q ss_pred CcccCcc-ccCCCCCcEeeecCCCcCee
Q 044640 77 LESFPES-LEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 77 l~~lP~~-~~~l~~L~~L~L~~n~i~~l 103 (305)
...+|.. ++.+++|+.|++++|.+.+.
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred ccccchhhhhccCcCCEEECCCCccccc
Confidence 5455433 55666666666666666554
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.05 E-value=6.2e-10 Score=106.92 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=94.1
Q ss_pred CeecCCCCCcccC--CCcCCccEEEEecCCCcc-cCccccCCCCCCEEecccccccc--cccccccccccccEEEEEecC
Q 044640 1 IDFSSCVNLTEFP--QISGNIKTLYLFETAIEE-VPSSIECLTNLTLLTISRCTRLK--RVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~~~P--~~~~~L~~L~L~~n~i~~-lP~si~~L~~L~~L~L~~c~~l~--~lP~~i~~l~~L~~L~l~~c~ 75 (305)
|++++| .+..++ ..+.+|+.|+|++|.++. +|..++.+++|+.|++++|+... .+|..+..+++|++|++++|.
T Consensus 307 L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 307 FTVSGT-RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEESS-CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEcCCC-ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 467777 455554 556688999999999884 78888999999999999865433 566778888999999999876
Q ss_pred CCcccCcc-ccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEE
Q 044640 76 NLESFPES-LEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLL 140 (305)
Q Consensus 76 ~l~~lP~~-~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l 140 (305)
....+|.. +..+++|+.|++++|.+++..|..+. .++. ++..+.+. .+|.++........+
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQEL 449 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEE
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEE
Confidence 55557764 67788888999988888665455442 2222 34444443 578776644444433
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.05 E-value=2.5e-10 Score=110.23 Aligned_cols=112 Identities=18% Similarity=0.088 Sum_probs=90.6
Q ss_pred ecCCCCCcccCCCcC-CccEEEEecCCCccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCccc
Q 044640 3 FSSCVNLTEFPQISG-NIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 3 Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~l 80 (305)
++++ .++++|..+. +|+.|+|++|.|+.+ |..++.+++|++|++++|......|..+..+++|++|++++|......
T Consensus 12 ~~~~-~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 12 GRSR-SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp CTTS-CCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCCC-ccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 3444 7889998665 899999999999976 578999999999999997544445578999999999999997655544
Q ss_pred CccccCCCCCcEeeecCCCcCee-CCCCccccccCC
Q 044640 81 PESLEKMEHLNQINLGRAKITEQ-RPSSFENERGRL 115 (305)
Q Consensus 81 P~~~~~l~~L~~L~L~~n~i~~l-~P~si~~l~~l~ 115 (305)
|..++.+++|++|++++|.++++ .|..++.+.+|.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 55599999999999999999854 266677766665
No 76
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=2.5e-10 Score=93.34 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=85.8
Q ss_pred CCccEEEEecCCCc--ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEee
Q 044640 17 GNIKTLYLFETAIE--EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQIN 94 (305)
Q Consensus 17 ~~L~~L~L~~n~i~--~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~ 94 (305)
.+|+.|+|++|.|+ .+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 48999999999999 999999999999999999965 6666 7788999999999999876666888888899999999
Q ss_pred ecCCCcCeeCC--CCccccccCC--CCCcccc
Q 044640 95 LGRAKITEQRP--SSFENERGRL--GGPSIIL 122 (305)
Q Consensus 95 L~~n~i~~l~P--~si~~l~~l~--~l~~~~l 122 (305)
+++|.++.+ | ..+..+++|. .+..+.+
T Consensus 102 Ls~N~l~~~-~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 102 LSGNKLKDI-STLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp CBSSSCCSS-GGGGGGSSCSCCCEEECCSSGG
T ss_pred ccCCccCcc-hhHHHHhcCCCCCEEEeeCCcC
Confidence 999999987 5 5666665554 3334444
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.04 E-value=1.1e-09 Score=99.27 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=59.0
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
+|+.|++++|.++.+|..+. ++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++
T Consensus 172 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 66677777777776666554 5677777776543333355666667777777776544433344566666777777777
Q ss_pred CCcCeeCCCCccccccCC
Q 044640 98 AKITEQRPSSFENERGRL 115 (305)
Q Consensus 98 n~i~~l~P~si~~l~~l~ 115 (305)
|.+..+ |..+..++++.
T Consensus 250 N~l~~l-p~~l~~l~~L~ 266 (330)
T 1xku_A 250 NKLVKV-PGGLADHKYIQ 266 (330)
T ss_dssp SCCSSC-CTTTTTCSSCC
T ss_pred CcCccC-ChhhccCCCcC
Confidence 777666 66665555443
No 78
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=104.42 Aligned_cols=111 Identities=23% Similarity=0.300 Sum_probs=66.2
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCcccC-ccccCCCCCCEEeccccccccccccc-ccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|. .+ .+|+.|+|++|.|+.++ ..++.+++|+.|++++| .+..+|.. +..+++|++|++++|
T Consensus 57 L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 57 LDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC
T ss_pred EECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC
Confidence 456666 5566654 22 26677777777777553 45677777777777764 44455544 566667777777664
Q ss_pred CCCcccCc--cccCCCCCcEeeecCC-CcCeeCCCCccccccC
Q 044640 75 LNLESFPE--SLEKMEHLNQINLGRA-KITEQRPSSFENERGR 114 (305)
Q Consensus 75 ~~l~~lP~--~~~~l~~L~~L~L~~n-~i~~l~P~si~~l~~l 114 (305)
.+..+|. .+..+++|++|++++| .+..+.|..+..++++
T Consensus 135 -~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 135 -PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp -CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred -CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 3445554 5666667777777666 3555534444444333
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=4.5e-10 Score=107.74 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=78.3
Q ss_pred eecCCCCCcccCCCcCCccEEEEecCCCccc-CccccCCCCCCEEeccccccccccccccc-ccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISGNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVSTSIC-KLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~-~l~~L~~L~l~~c~~l~~ 79 (305)
+|++|......+..+.+|+.|+|++|.|+.+ |..++.+++|+.|+|++|......|..+. .+++|+.|++++|. +..
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 4555522222223345677777777777754 55677777777777777654444565554 57777777777754 444
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCC
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQS 135 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~ 135 (305)
+|.. ..+++|+.|+|++|.++++ |..+..+.+|. ++..+.+.+ +|.++....
T Consensus 184 ~~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~ 237 (487)
T 3oja_A 184 VKGQ-VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQ 237 (487)
T ss_dssp EECC-CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCT
T ss_pred cccc-ccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc--cchhhccCC
Confidence 4433 2477777777777777777 66666665554 444444443 666665433
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.03 E-value=1.1e-09 Score=98.68 Aligned_cols=97 Identities=24% Similarity=0.313 Sum_probs=66.4
Q ss_pred CeecCCCCCcccCCCc--CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|++++| .++.+|... .+|+.|+|++|.|+.+|. +..+++|+.|++++| .+..+| .+..+++|+.|++++|. +.
T Consensus 46 L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~-l~ 120 (308)
T 1h6u_A 46 LSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQ-IT 120 (308)
T ss_dssp EECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSC-CC
T ss_pred EEeeCC-CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCC-CC
Confidence 456666 666666432 377888888888887776 777888888888875 355555 46677777777777754 44
Q ss_pred ccCccccCCCCCcEeeecCCCcCee
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.+|. +..+++|+.|++++|.++++
T Consensus 121 ~~~~-l~~l~~L~~L~l~~n~l~~~ 144 (308)
T 1h6u_A 121 DVTP-LAGLSNLQVLYLDLNQITNI 144 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred Cchh-hcCCCCCCEEECCCCccCcC
Confidence 4553 66677777777777777666
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.03 E-value=1.4e-09 Score=95.93 Aligned_cols=95 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred eecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
++++| .++.+|.. +.+|+.|+|++|.|+.+|. +..+++|+.|++++| .+..+|.... ++|+.|++++| .+..
T Consensus 47 ~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N-~l~~ 120 (263)
T 1xeu_A 47 NGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNN-ELRD 120 (263)
T ss_dssp ECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEECCSS-CCSB
T ss_pred ECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEccCC-ccCC
Confidence 44444 44444421 1245555555555555554 555555555555552 3444444222 55555555554 2333
Q ss_pred cCccccCCCCCcEeeecCCCcCee
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
+| .+..+++|+.|++++|.++++
T Consensus 121 ~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 121 TD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp SG-GGTTCTTCCEEECTTSCCCBC
T ss_pred Ch-hhcCcccccEEECCCCcCCCC
Confidence 33 345555566666666555555
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.03 E-value=5.7e-10 Score=108.50 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=89.3
Q ss_pred CeecCCCCCcccCCCc-CCccEEEEecCCCcccC-ccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQIS-GNIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~-~~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
+++++| .++.+|..+ .+|+.|+|++|.|+.+| ..++.+++|+.|+|++|+.....|..+.++++|++|++++| .+.
T Consensus 36 l~ls~~-~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 113 (562)
T 3a79_B 36 VDYSNR-NLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQ 113 (562)
T ss_dssp EECTTS-CCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred EEcCCC-CCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCC
Confidence 467887 788899755 48999999999999886 57899999999999996544444777889999999999996 466
Q ss_pred ccCccccCCCCCcEeeecCCCcCee-CCCCccccccCC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ-RPSSFENERGRL 115 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l-~P~si~~l~~l~ 115 (305)
.+|.. .+++|++|++++|.+.++ .|..++.+.+|.
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 88877 789999999999999886 135677665554
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=3.4e-10 Score=110.73 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=88.3
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
.|+.|+|++|.|+.+|. ++.+++|+.|+|++| .+..+|..++.+++|+.|++++| .+..+| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 58899999999999997 999999999999995 67799999999999999999996 566688 889999999999999
Q ss_pred CCcCeeC-CCCccccccCC--CCCccccCC
Q 044640 98 AKITEQR-PSSFENERGRL--GGPSIILPG 124 (305)
Q Consensus 98 n~i~~l~-P~si~~l~~l~--~l~~~~lpG 124 (305)
|.++++. |..++.+++|. .+..+.+.+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 9999986 78888777665 444444443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.02 E-value=1.2e-09 Score=98.35 Aligned_cols=107 Identities=16% Similarity=0.315 Sum_probs=79.4
Q ss_pred CeecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .++.+|.. +.+|+.|+|++|.|+.+| .+..+++|+.|++++| .+..+|. +..+++|+.|++++| .+.
T Consensus 68 L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~ 142 (308)
T 1h6u_A 68 LELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QIT 142 (308)
T ss_dssp EECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCC
T ss_pred EEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccC
Confidence 567887 67777752 237888999999888876 5888889999999885 4666665 778888888888886 445
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
.++. ++.+++|+.|++++|.++.+ |. +..+.+|.
T Consensus 143 ~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 176 (308)
T 1h6u_A 143 NISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLT 176 (308)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred cCcc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCC
Confidence 5554 67788888888888888877 44 55555443
No 85
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.02 E-value=1.7e-09 Score=102.01 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=78.4
Q ss_pred CCcccCCCcC-CccEEEEecCCCcccC-ccccCCCCCCEEecccccccccc-cccccccccccEEEEEecCCCcccCc-c
Q 044640 8 NLTEFPQISG-NIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRV-STSICKLKSLIWLSVHGCLNLESFPE-S 83 (305)
Q Consensus 8 ~l~~~P~~~~-~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L~l~~c~~l~~lP~-~ 83 (305)
.++.+|..+. +++.|+|++|.|+.++ ..+..+++|+.|+|++|+ +..+ +..+.++++|++|++++| .+..+|. .
T Consensus 54 ~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 54 NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp CCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhH
Confidence 6778887664 7889999999998765 678889999999999864 4444 467788889999999886 4555554 6
Q ss_pred ccCCCCCcEeeecCCCcCeeCCCCcccccc
Q 044640 84 LEKMEHLNQINLGRAKITEQRPSSFENERG 113 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~~l~P~si~~l~~ 113 (305)
+..+++|+.|+|++|.+..+.+..+..+.+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 788888999999988888883334444433
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=2.2e-09 Score=97.14 Aligned_cols=99 Identities=18% Similarity=0.309 Sum_probs=63.0
Q ss_pred CeecCCCCCcccCCCcC-CccEEEEecCCCcccCc-cccCCCCCCEEeccccccc--ccccccccccccccEEEEEecCC
Q 044640 1 IDFSSCVNLTEFPQISG-NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRL--KRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l--~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
|+|++| .++.+|..+. +|+.|++++|.++.++. .+..+++|+.|++++|... ...+..+..+++|+.|++++|.
T Consensus 105 L~Ls~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 105 LYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN- 182 (330)
T ss_dssp EECCSS-CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred EECCCC-cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-
Confidence 567887 6778886654 88889999988887765 4678888888888875432 2445566667777777666643
Q ss_pred CcccCccccCCCCCcEeeecCCCcCee
Q 044640 77 LESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 77 l~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
+..+|..+. ++|+.|++++|.++++
T Consensus 183 l~~l~~~~~--~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 183 ITTIPQGLP--PSLTELHLDGNKITKV 207 (330)
T ss_dssp CCSCCSSCC--TTCSEEECTTSCCCEE
T ss_pred cccCCcccc--ccCCEEECCCCcCCcc
Confidence 334443322 3444444444444444
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.01 E-value=9.6e-10 Score=99.73 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=82.0
Q ss_pred eecCCCCCcccCCCcC-CccEEEEecCCCcccC-ccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQISG-NIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~-~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+++++ .++.+|..+. +++.|+|++|.|+.+| ..+..+++|+.|++++|+.....|..+..+++|++|++++| .+..
T Consensus 39 ~~~~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 116 (332)
T 2ft3_A 39 QCSDL-GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVE 116 (332)
T ss_dssp ECCSS-CCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCS
T ss_pred ECCCC-CccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCc
Confidence 45665 6778887654 8899999999998775 47889999999999986544444778888899999999885 4567
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCC-CccccccCC
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPS-SFENERGRL 115 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~-si~~l~~l~ 115 (305)
+|..+. ++|++|++++|.+..+ |. .+..++++.
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~ 150 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMN 150 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCCCC-CSGGGSSCSSCC
T ss_pred cCcccc--ccCCEEECCCCccCcc-CHhHhCCCccCC
Confidence 777654 7888888888888887 44 355555443
No 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=3.1e-10 Score=90.86 Aligned_cols=102 Identities=16% Similarity=0.268 Sum_probs=86.5
Q ss_pred CeecCCCCCc--ccCCCcC---CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecC
Q 044640 1 IDFSSCVNLT--EFPQISG---NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~--~~P~~~~---~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~ 75 (305)
|++++| .++ .+|..+. +|+.|+|++|.|+.+ ..++.+++|+.|++++|.....+|..+..+++|++|++++|.
T Consensus 22 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 22 LVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp EECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred EEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence 578888 565 8887654 899999999999988 789999999999999975544488888889999999999975
Q ss_pred CCcccC--ccccCCCCCcEeeecCCCcCeeCCC
Q 044640 76 NLESFP--ESLEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 76 ~l~~lP--~~~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
+..+| ..++.+++|++|++++|.++++ |.
T Consensus 100 -i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~ 130 (149)
T 2je0_A 100 -IKDLSTIEPLKKLENLKSLDLFNCEVTNL-ND 130 (149)
T ss_dssp -CCSHHHHGGGGGCTTCCEEECTTCGGGGS-TT
T ss_pred -CCChHHHHHHhhCCCCCEEeCcCCcccch-HH
Confidence 55554 7889999999999999999988 64
No 89
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=1.2e-09 Score=90.01 Aligned_cols=100 Identities=23% Similarity=0.371 Sum_probs=82.3
Q ss_pred CeecCCCCCcccCCC-c---CCccEEEEecCCCcccCcc-ccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQI-S---GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-~---~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|.. + .+|+.|+|++|.|+.+|.. ++.+++|+.|+|++| .+..+|. .+..+++|++|++++|
T Consensus 33 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 33 LELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC
Confidence 578887 57777753 2 4899999999999988876 689999999999995 5666665 4678999999999997
Q ss_pred CCCcccCcc-ccCCCCCcEeeecCCCcCee
Q 044640 75 LNLESFPES-LEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 75 ~~l~~lP~~-~~~l~~L~~L~L~~n~i~~l 103 (305)
.+..+|.. +..+++|+.|++++|.+.+.
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 111 -QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 45567654 57899999999999999876
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=111.88 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=65.0
Q ss_pred CeecCCCCCccc-CCCc---CCccEEEEecCC-Cccc-CccccCCCCCCEEecccccccccccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEF-PQIS---GNIKTLYLFETA-IEEV-PSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~-P~~~---~~L~~L~L~~n~-i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+ |..+ .+|+.|+|++|. +..+ |..++++++|+.|+|++|+.....|..+.++++|++|++++|
T Consensus 29 LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 29 LLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 466776 44444 3333 256667777663 3355 556667777777777765444444666666666666666666
Q ss_pred CCCcccCcc--ccCCCCCcEeeecCCCcCeeCC-CCccccccC
Q 044640 75 LNLESFPES--LEKMEHLNQINLGRAKITEQRP-SSFENERGR 114 (305)
Q Consensus 75 ~~l~~lP~~--~~~l~~L~~L~L~~n~i~~l~P-~si~~l~~l 114 (305)
.....+|.. ++.+++|++|+|++|.+.++.| ..++++++|
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 554444443 5666666666666666665522 234444443
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.99 E-value=1.7e-09 Score=105.18 Aligned_cols=106 Identities=17% Similarity=0.118 Sum_probs=70.1
Q ss_pred CeecCCCCCcccC--CCcCCccEEEEecCCCcc-cCccccCCCCCCEEecccccccc---cccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFP--QISGNIKTLYLFETAIEE-VPSSIECLTNLTLLTISRCTRLK---RVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P--~~~~~L~~L~L~~n~i~~-lP~si~~L~~L~~L~L~~c~~l~---~lP~~i~~l~~L~~L~l~~c 74 (305)
|++++| .+..++ ....+|+.|+|++|.++. +|..++.+++|+.|++++| .+. .+|..+..+++|+.|++++|
T Consensus 336 L~l~~n-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDT-PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESS-CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCC-CcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC
Confidence 356666 343333 445578888888888874 6777788888888888875 444 33455677788888888876
Q ss_pred CCCcccCcc-ccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 75 LNLESFPES-LEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 75 ~~l~~lP~~-~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
.....+|.. +..+++|+.|++++|.+++..|..+
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 555446653 5667777777777777765445444
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.98 E-value=9.5e-10 Score=99.31 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=78.1
Q ss_pred eecCCCCCcccC-CCcCCccEEEEecCCCcccC-ccccCCCCCCEEecccccccccccccc-cccccccEEEEEecCCCc
Q 044640 2 DFSSCVNLTEFP-QISGNIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKRVSTSI-CKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 2 ~Ls~c~~l~~~P-~~~~~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~lP~~i-~~l~~L~~L~l~~c~~l~ 78 (305)
++++| .++.+| ..+.+|+.|+|++|.|+.++ ..++.+++|+.|++++|......|..+ ..+++|++|++++|. +.
T Consensus 105 ~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~ 182 (317)
T 3o53_A 105 HAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182 (317)
T ss_dssp ECCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC
T ss_pred ECCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cc
Confidence 45555 333333 33456777777777777664 366777788888888754433334444 357778888887754 44
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQ 134 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~ 134 (305)
.+|... .+++|+.|+|++|.++++ |..+..+.++. .+..+.+. .+|.++...
T Consensus 183 ~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l 236 (317)
T 3o53_A 183 DVKGQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV--LIEKALRFS 236 (317)
T ss_dssp EEECCC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC--EECTTCCCC
T ss_pred cccccc-ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc--chhhHhhcC
Confidence 554433 477788888888888877 66666666554 34444443 366666443
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.97 E-value=9.6e-10 Score=101.89 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=68.1
Q ss_pred eecCCCCCcccCCCc----CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 2 DFSSCVNLTEFPQIS----GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~----~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
++++| .++.+|... .+|+.|+|++|.|+.+|. .+..+++|+.|++++|......|..+..+++|++|++++| .
T Consensus 51 ~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 128 (390)
T 3o6n_A 51 TFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-D 128 (390)
T ss_dssp EEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-c
Confidence 45554 456666532 367777777777776654 5677777777777775433333445667777777777775 3
Q ss_pred CcccCcc-ccCCCCCcEeeecCCCcCeeCCCCccccccC
Q 044640 77 LESFPES-LEKMEHLNQINLGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 77 l~~lP~~-~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l 114 (305)
+..+|.. ++.+++|++|++++|.+.++.|..+..+++|
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 4455544 4667777777777777776644445554444
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.96 E-value=1.6e-09 Score=107.41 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=102.0
Q ss_pred CeecCCCCCcccCCC-c---CCccEEEEecCCCccc-CccccCCCCCCEEecccccccccccc-cccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQI-S---GNIKTLYLFETAIEEV-PSSIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-~---~~L~~L~L~~n~i~~l-P~si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|.. + .+|+.|+|++|.++.+ |..++.+++|+.|+|++| .+..+|. .+.++++|++|++++|
T Consensus 30 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 30 LNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC
Confidence 578887 67777753 3 3789999999999966 667899999999999985 5667776 5889999999999997
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEEEcCC
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTLQMPQ 146 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~lp~ 146 (305)
......|..++.+++|++|++++|.+.+..|..+.++++|. .+..+.+.+ ..|.+|......+...+++..
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTT
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCC
Confidence 65444446788999999999999999888566676666654 333343433 234445433333444555543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.96 E-value=3e-09 Score=95.09 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=75.9
Q ss_pred CeecCCCCCcccCCCc--CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|++++| .++.+|... .+|+.|+|++|.|+.++. +..+++|+.|++++| .+..+|. +..+++|+.|++++|. +.
T Consensus 51 L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~-i~ 125 (291)
T 1h6t_A 51 IIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNG-IS 125 (291)
T ss_dssp EECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSC-CC
T ss_pred EEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCc-CC
Confidence 456776 667776532 478888888888888777 888888888888885 4566655 7778888888888864 44
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
.++ .+..+++|+.|++++|.++++ + .+..+.+|.
T Consensus 126 ~~~-~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 159 (291)
T 1h6t_A 126 DIN-GLVHLPQLESLYLGNNKITDI-T-VLSRLTKLD 159 (291)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCS
T ss_pred CCh-hhcCCCCCCEEEccCCcCCcc-h-hhccCCCCC
Confidence 453 466777888888888887776 3 444444443
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.96 E-value=3e-09 Score=101.12 Aligned_cols=96 Identities=18% Similarity=0.329 Sum_probs=52.1
Q ss_pred eecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccC
Q 044640 2 DFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFP 81 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP 81 (305)
++++| .++.+|....+|+.|+|++|.++.+| +++.+++|+.|++++| .+..+|..+ .+|++|++++| .+..+|
T Consensus 117 ~l~~n-~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~ 189 (454)
T 1jl5_A 117 LVDNN-NLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP 189 (454)
T ss_dssp ECCSS-CCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC
T ss_pred ECCCC-ccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc
Confidence 34444 34444444345555666666666555 3666666666666663 344455432 35566666654 333455
Q ss_pred ccccCCCCCcEeeecCCCcCeeCCC
Q 044640 82 ESLEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
.++.+++|+.|++++|.++++ |.
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~l-~~ 212 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKKL-PD 212 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSSC-CC
T ss_pred -cccCCCCCCEEECCCCcCCcC-CC
Confidence 355666666666666666654 44
No 97
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.95 E-value=1.9e-09 Score=99.80 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=44.9
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
+|+.|+|++|.++.+ ..++.+++|+.|++++|......|..+..+++|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 227 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp SCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCS
T ss_pred cccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCC
Confidence 444455555544443 23455555555555554333333444555555555555553 3344444444555555555555
Q ss_pred CCcCeeCCCCccccc
Q 044640 98 AKITEQRPSSFENER 112 (305)
Q Consensus 98 n~i~~l~P~si~~l~ 112 (305)
|.+..+ |..+..++
T Consensus 305 n~l~~~-~~~~~~l~ 318 (390)
T 3o6n_A 305 NHLLHV-ERNQPQFD 318 (390)
T ss_dssp SCCCCC-GGGHHHHT
T ss_pred Ccceec-CccccccC
Confidence 555554 44444333
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=3.7e-09 Score=94.49 Aligned_cols=106 Identities=16% Similarity=0.280 Sum_probs=61.9
Q ss_pred CeecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .++.+|.. +.+|+.|+|++|.++.+|. +..+++|+.|++++| .+..++ .+..+++|+.|++++|. +.
T Consensus 73 L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~ 147 (291)
T 1h6t_A 73 LFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-IT 147 (291)
T ss_dssp EECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CC
T ss_pred EEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CC
Confidence 355665 45555542 2256667777776666554 666677777777664 344443 35566667777776653 33
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l 114 (305)
.+ ..++.+++|+.|++++|.+.++ +. +..+.+|
T Consensus 148 ~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L 180 (291)
T 1h6t_A 148 DI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKL 180 (291)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTC
T ss_pred cc-hhhccCCCCCEEEccCCccccc-hh-hcCCCcc
Confidence 34 3456666677777777766666 33 4444443
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=2.8e-09 Score=104.54 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=55.0
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCcccCcc-ccCCCCCCEEeccccccccccccc-ccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+|. .+ .+|+.|+|++|.|+.+|+. ++.+++|+.|+|++| .+..+|.. ++.+++|++|++++|
T Consensus 80 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 80 LNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence 345555 3444442 22 2556666666666655433 456666666666663 34455544 355666666666665
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCee
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
......|..++.+++|+.|++++|.+.++
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred cCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 44444444566666666666666665554
No 100
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=1.1e-09 Score=107.51 Aligned_cols=112 Identities=13% Similarity=0.225 Sum_probs=86.9
Q ss_pred eecCCCCCcccCCCc----CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccccccccccccEEEEEecCC
Q 044640 2 DFSSCVNLTEFPQIS----GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLN 76 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~----~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~ 76 (305)
++++| .++.+|..+ .+|+.|+|++|.|+.+|. .++.+++|+.|+|++|......|..++.+++|++|++++| .
T Consensus 57 ~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 134 (597)
T 3oja_B 57 TFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-D 134 (597)
T ss_dssp EESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-C
Confidence 45665 567777643 489999999999997765 8899999999999996544444455788999999999997 4
Q ss_pred CcccCcc-ccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 77 LESFPES-LEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 77 l~~lP~~-~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
+..+|.. ++.+++|++|+|++|.+.++.|..+..+.+|.
T Consensus 135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 5566655 58899999999999999988566677666554
No 101
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.9e-09 Score=98.24 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=74.6
Q ss_pred eecCCCCCcccCCCcC---CccEEEEec-CCCcccC-ccccCCCCCCEEecccccccccc-cccccccccccEEEEEecC
Q 044640 2 DFSSCVNLTEFPQISG---NIKTLYLFE-TAIEEVP-SSIECLTNLTLLTISRCTRLKRV-STSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~---~L~~L~L~~-n~i~~lP-~si~~L~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L~l~~c~ 75 (305)
+++++..|+.+|. +. +|+.|+|++ |.|+.+| ..++.|++|+.|+|++|+ +..+ |..+.+|++|+.|+|++|
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-
Confidence 3444336888998 64 588999996 9999887 468899999999999964 5544 456788999999999985
Q ss_pred CCcccCccccCCCCCcEeeecCCCcCee
Q 044640 76 NLESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 76 ~l~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.+..+|........|+.|+|.+|.+...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCC
Confidence 5666765443333499999999988764
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=2.8e-09 Score=104.20 Aligned_cols=93 Identities=15% Similarity=0.315 Sum_probs=58.9
Q ss_pred CeecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCccc
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~l 80 (305)
|+|++| .++.+|..+.+|+.|+|++|.|+.+|. +.. +|+.|+|++| .+..+|. .+++|+.|++++|. +..+
T Consensus 85 L~Ls~N-~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~l 155 (571)
T 3cvr_A 85 LEITQN-ALISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTML 155 (571)
T ss_dssp EECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCC
T ss_pred EECcCC-CCcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcC
Confidence 466776 566777555577777777777777776 544 6777777764 4555665 45666666666643 4445
Q ss_pred CccccCCCCCcEeeecCCCcCeeCCC
Q 044640 81 PESLEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 81 P~~~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
|. .+++|+.|+|++|.++++ |.
T Consensus 156 p~---~l~~L~~L~Ls~N~L~~l-p~ 177 (571)
T 3cvr_A 156 PE---LPTSLEVLSVRNNQLTFL-PE 177 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCC-CC
T ss_pred CC---cCCCcCEEECCCCCCCCc-ch
Confidence 55 355666666666666665 55
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=2.8e-09 Score=87.69 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=80.1
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccc-cccccccccccEEEEEecCCCcccCc-cccCCCCCcEeee
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRV-STSICKLKSLIWLSVHGCLNLESFPE-SLEKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L~l~~c~~l~~lP~-~~~~l~~L~~L~L 95 (305)
..+.|++++|.++++|..+. ++|+.|+|++| .+..+ |..+..+++|++|++++|. +..+|. .+..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 45789999999999998874 89999999996 45555 7778999999999999975 556665 5689999999999
Q ss_pred cCCCcCeeCCCCccccccCC--CCCccccC
Q 044640 96 GRAKITEQRPSSFENERGRL--GGPSIILP 123 (305)
Q Consensus 96 ~~n~i~~l~P~si~~l~~l~--~l~~~~lp 123 (305)
++|.++++.|..+..+.+|. .+..+.+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999999334566666554 33444333
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.93 E-value=6.5e-10 Score=108.69 Aligned_cols=131 Identities=19% Similarity=0.261 Sum_probs=97.8
Q ss_pred CeecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCccc
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~l 80 (305)
|+|++| .++.+|....+|+.|+|++|.|+.+|. .+++|+.|+|++| .+..+|. .+++|+.|++++| .+..+
T Consensus 105 L~Ls~N-~l~~ip~l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~L~~l 175 (571)
T 3cvr_A 105 LDACDN-RLSTLPELPASLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNN-QLTFL 175 (571)
T ss_dssp EECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCC
T ss_pred EEccCC-CCCCcchhhcCCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCC-CCCCc
Confidence 578898 777899833499999999999999998 6899999999995 5677887 5789999999996 46668
Q ss_pred CccccCCCCCcEeeecCCCcCeeCCCCccccccC-------C--CCCccccCCCCCccccccCCCCcEEEEEcCCCCCCC
Q 044640 81 PESLEKMEHLNQINLGRAKITEQRPSSFENERGR-------L--GGPSIILPGSEIPEWFSNQSSGSLLTLQMPQHCRQT 151 (305)
Q Consensus 81 P~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l-------~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~lp~~~~~~ 151 (305)
|. +. ++|+.|+|++|.|+.+ |. +.. ++ . .+..+.+. .||.++.... +...++| ..|.
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~--~L~~L~L---~~N~ 241 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRIT--HIPENILSLD--PTCTIIL---EDNP 241 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCC--CCCGGGGGSC--TTEEEEC---CSSS
T ss_pred ch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcce--ecCHHHhcCC--CCCEEEe---eCCc
Confidence 88 65 8999999999999988 87 543 33 2 44444443 5898876643 3445555 3445
Q ss_pred ccc
Q 044640 152 LVG 154 (305)
Q Consensus 152 ~~g 154 (305)
+.|
T Consensus 242 l~~ 244 (571)
T 3cvr_A 242 LSS 244 (571)
T ss_dssp CCH
T ss_pred CCC
Confidence 554
No 105
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.93 E-value=6.3e-10 Score=100.26 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=67.7
Q ss_pred cCCccEEEEecCCCc-ccCccc--cCCCCCCEEeccccccccccccccccc-----ccccEEEEEecCCCcccCccccCC
Q 044640 16 SGNIKTLYLFETAIE-EVPSSI--ECLTNLTLLTISRCTRLKRVSTSICKL-----KSLIWLSVHGCLNLESFPESLEKM 87 (305)
Q Consensus 16 ~~~L~~L~L~~n~i~-~lP~si--~~L~~L~~L~L~~c~~l~~lP~~i~~l-----~~L~~L~l~~c~~l~~lP~~~~~l 87 (305)
+.+|+.|+|++|.|+ .+|..+ +.+++|+.|+|++| .+..+|..+..+ ++|++|++++|......|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 457888999988888 678876 88888999999885 455557777776 888999998876555555788888
Q ss_pred CCCcEeeecCCCcCe
Q 044640 88 EHLNQINLGRAKITE 102 (305)
Q Consensus 88 ~~L~~L~L~~n~i~~ 102 (305)
++|++|++++|.+.+
T Consensus 173 ~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 173 PALSTLDLSDNPELG 187 (312)
T ss_dssp SSCCEEECCSCTTCH
T ss_pred CCCCEEECCCCCcCc
Confidence 889999998888654
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.92 E-value=4.7e-09 Score=99.80 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=64.5
Q ss_pred CeecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCccc
Q 044640 1 IDFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESF 80 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~l 80 (305)
|++++| .++.+|....+|+.|+|++|.++.+| .++.+++|+.|++++| .+..+|... ++|+.|++++| .+..+
T Consensus 158 L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~l~~n-~l~~l 230 (454)
T 1jl5_A 158 IDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGNN-ILEEL 230 (454)
T ss_dssp EECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCCEEECCSS-CCSSC
T ss_pred EECCCC-cCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---CcccEEECcCC-cCCcc
Confidence 345555 45556666666677777777666666 4677777777777764 344455433 46777777775 34467
Q ss_pred CccccCCCCCcEeeecCCCcCeeCCCCc
Q 044640 81 PESLEKMEHLNQINLGRAKITEQRPSSF 108 (305)
Q Consensus 81 P~~~~~l~~L~~L~L~~n~i~~l~P~si 108 (305)
|. ++.+++|+.|++++|.++++ |..+
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~l-~~~~ 256 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKTL-PDLP 256 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSSC-CSCC
T ss_pred cc-cCCCCCCCEEECCCCcCCcc-cccc
Confidence 74 67777888888888877776 6543
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=96.57 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=25.6
Q ss_pred CccEEEEecCCCcc-cC----ccccCCCCCCEEecccccccccccccccccccccEEEEEecC
Q 044640 18 NIKTLYLFETAIEE-VP----SSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCL 75 (305)
Q Consensus 18 ~L~~L~L~~n~i~~-lP----~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~ 75 (305)
+|+.|+|++|.|+. .| ..+..+++|+.|+|++|......|..+..+++|++|++++|.
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 44555555555542 11 122344455555555533322223344445555555555543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=3.2e-09 Score=93.56 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=95.3
Q ss_pred eecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
+++++ .++.++.. +.+|+.|++++|.|+.+| .+..+++|+.|++++| .+..+|. +..+++|+.|++++| .+..
T Consensus 25 ~l~~~-~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~ 99 (263)
T 1xeu_A 25 NLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKN 99 (263)
T ss_dssp HHTCS-CTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSC
T ss_pred HhcCC-CcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCC
Confidence 35555 56666632 348999999999999998 7999999999999995 6777877 899999999999996 5667
Q ss_pred cCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCccccccCCCCcEEEEEc
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSNQSSGSLLTLQM 144 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~~~~~~~l~i~l 144 (305)
+|.... .+|+.|++++|.++++ | .+..+.+|. ++..+.+.+ +| .+....... .+++
T Consensus 100 l~~~~~--~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~--~L~L 157 (263)
T 1xeu_A 100 LNGIPS--ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLE--VLDL 157 (263)
T ss_dssp CTTCCC--SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCC--EEEC
T ss_pred cCcccc--CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC--Ch-HHccCCCCC--EEEC
Confidence 776554 8999999999999987 5 466666554 444444433 44 454433333 4444
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=5.9e-10 Score=91.99 Aligned_cols=100 Identities=21% Similarity=0.366 Sum_probs=83.9
Q ss_pred CeecCCCCCcccCCCc--CCccEEEEecCCCcccCccc-cCCCCCCEEecccccccccccc--cccccccccEEEEEecC
Q 044640 1 IDFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSSI-ECLTNLTLLTISRCTRLKRVST--SICKLKSLIWLSVHGCL 75 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~si-~~L~~L~~L~L~~c~~l~~lP~--~i~~l~~L~~L~l~~c~ 75 (305)
|+|++| .++.++... .+|+.|+|++|.|+.+|..+ +.+++|+.|++++| .+..+|. .+..+++|+.|++++|
T Consensus 47 L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N- 123 (176)
T 1a9n_A 47 IDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN- 123 (176)
T ss_dssp EECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-
T ss_pred EECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-
Confidence 578888 677774332 38999999999999998776 89999999999995 6788887 7889999999999996
Q ss_pred CCcccCcc----ccCCCCCcEeeecCCCcCee
Q 044640 76 NLESFPES----LEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 76 ~l~~lP~~----~~~l~~L~~L~L~~n~i~~l 103 (305)
.+..+|.. +..+++|+.|+++.|.+.+.
T Consensus 124 ~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 124 PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 45678875 88899999999998876653
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.90 E-value=4.1e-09 Score=96.53 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=83.0
Q ss_pred CCcccCCCc-CCccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCccc-Ccc
Q 044640 8 NLTEFPQIS-GNIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESF-PES 83 (305)
Q Consensus 8 ~l~~~P~~~-~~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~l-P~~ 83 (305)
+++++|..+ .+++.|+|++|.|+.+|. .+..+++|+.|+|++|+.++.+|. .+.++++|+.+...+++.+..+ |..
T Consensus 20 ~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 20 KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 789999766 589999999999999997 579999999999999877777875 5678898887666665677777 567
Q ss_pred ccCCCCCcEeeecCCCcCeeCCC
Q 044640 84 LEKMEHLNQINLGRAKITEQRPS 106 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n~i~~l~P~ 106 (305)
+..+++|++|++++|.+..+ |.
T Consensus 100 f~~l~~L~~L~l~~n~l~~~-~~ 121 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHL-PD 121 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSC-CC
T ss_pred hhhccccccccccccccccC-Cc
Confidence 89999999999999999988 53
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.90 E-value=6.2e-09 Score=102.79 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=14.8
Q ss_pred eecCCCCCcccCCCcCCccEEEEecCCCcccC
Q 044640 2 DFSSCVNLTEFPQISGNIKTLYLFETAIEEVP 33 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP 33 (305)
+|++| +++.+|..+.+|+.|+|++|.|+.+|
T Consensus 127 ~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 127 WIFGN-QLTSLPVLPPGLQELSVSDNQLASLP 157 (622)
T ss_dssp ECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred ECCCC-CCCcCCCCCCCCCEEECcCCcCCCcC
Confidence 34444 34444444445555555555554444
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.89 E-value=1.2e-09 Score=104.81 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=97.0
Q ss_pred CeecCCCCCccc-CCCc---CCccEEEEecCCCcc-cCcccc-CCCCCCEEecccccccccccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEF-PQIS---GNIKTLYLFETAIEE-VPSSIE-CLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~-P~~~---~~L~~L~L~~n~i~~-lP~si~-~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.+ |..+ .+|+.|+|++|.|+. .|..+. .+++|+.|+|++| .+..+|.. ..+++|+.|++++|
T Consensus 125 L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN 201 (487)
T ss_dssp EECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS
T ss_pred EECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCC
Confidence 578888 45544 4444 489999999999995 577775 8999999999995 56666654 46899999999996
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCcccccc
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSN 133 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~ 133 (305)
.+..+|..+..+++|+.|+|++|.+.++ |..+..+.++. .+..+.+....+|.|+..
T Consensus 202 -~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 202 -KLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -CCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -CCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 5667887899999999999999999998 98887766654 333343331245666643
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=4.7e-09 Score=86.71 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=77.1
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCcc-ccCCCCCcEeeec
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPES-LEKMEHLNQINLG 96 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~-~~~l~~L~~L~L~ 96 (305)
.-+.++++++.++++|..+. ++|+.|+|++|+.....|..+..+++|++|++++| .+..+|.. +..+++|+.|+|+
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 34679999999999999885 89999999996544444678899999999999996 56677764 6899999999999
Q ss_pred CCCcCeeCCCC-ccccccCC
Q 044640 97 RAKITEQRPSS-FENERGRL 115 (305)
Q Consensus 97 ~n~i~~l~P~s-i~~l~~l~ 115 (305)
+|.++++ |.. +..+.+|.
T Consensus 90 ~N~l~~l-~~~~~~~l~~L~ 108 (174)
T 2r9u_A 90 DNHLKSI-PRGAFDNLKSLT 108 (174)
T ss_dssp SSCCCCC-CTTTTTTCTTCS
T ss_pred CCcccee-CHHHhccccCCC
Confidence 9999998 554 66666554
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.87 E-value=1.5e-09 Score=107.25 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=72.9
Q ss_pred eecCCCCCcccCCCcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccC
Q 044640 2 DFSSCVNLTEFPQISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFP 81 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP 81 (305)
+|++| .++.+|..+.+|+.|++++|.|+.+|.. +++|+.|++++| .+..+| ..+++|+.|++++| .+..+|
T Consensus 187 ~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp 257 (622)
T 3g06_A 187 SVSDN-QLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLP 257 (622)
T ss_dssp ECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCC
T ss_pred ECCCC-CCCCCCCccchhhEEECcCCcccccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCC
Confidence 45555 4555555555566666666666655543 366788888874 566677 34577888888885 556677
Q ss_pred ccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCcccc
Q 044640 82 ESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWF 131 (305)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f 131 (305)
. .+++|+.|+|++|.++.+ |..+..+++|. .+..+.+.| .+|..|
T Consensus 258 ~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~-~~~~~l 304 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSE-RTLQAL 304 (622)
T ss_dssp C---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCH-HHHHHH
T ss_pred c---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCC-cCHHHH
Confidence 6 467788888888888877 77777666554 344444443 234433
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.86 E-value=1.8e-09 Score=97.54 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=97.2
Q ss_pred CeecCCCCCcccCC-Cc---CCccEEEEecCCCccc-Cccc-cCCCCCCEEecccccccccccccccccccccEEEEEec
Q 044640 1 IDFSSCVNLTEFPQ-IS---GNIKTLYLFETAIEEV-PSSI-ECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGC 74 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~---~~L~~L~L~~n~i~~l-P~si-~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c 74 (305)
|+|++| .++.++. .+ .+|+.|+|++|.|+.+ |..+ ..+++|+.|+|++| .+..+|... .+++|+.|++++|
T Consensus 125 L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~L~Ls~N 201 (317)
T 3o53_A 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN 201 (317)
T ss_dssp EECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEECCSS
T ss_pred EECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-ccccCCEEECCCC
Confidence 578888 5666654 33 4899999999999965 4555 57999999999995 577776543 5899999999996
Q ss_pred CCCcccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC--CCCccccCCCCCcccccc
Q 044640 75 LNLESFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL--GGPSIILPGSEIPEWFSN 133 (305)
Q Consensus 75 ~~l~~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~~f~~ 133 (305)
.+..+|..+..+++|+.|++++|.++.+ |..+..++++. .+..+.+....+|.|+..
T Consensus 202 -~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 202 -KLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -CCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -cCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 5667888899999999999999999998 88887766654 344444432245677654
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.86 E-value=8.8e-09 Score=101.40 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=47.8
Q ss_pred CeecCCCCCcccCCCc--CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .+..+|... .+|+.|+|++|.|+.+|. +..+++|+.|+|++| .+..+| .+..+++|+.|+|++|. +.
T Consensus 48 L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~ 122 (605)
T 1m9s_A 48 IIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-IS 122 (605)
T ss_dssp CBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CC
T ss_pred EECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CC
Confidence 345555 455555321 256666666666665554 555566666666553 333333 34455555555555542 22
Q ss_pred ccCccccCCCCCcEeeecCCCcCee
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.+| .+..+++|+.|+|++|.+.++
T Consensus 123 ~l~-~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 123 DIN-GLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred CCc-cccCCCccCEEECCCCccCCc
Confidence 232 234444444444444444443
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=7e-09 Score=102.10 Aligned_cols=107 Identities=17% Similarity=0.275 Sum_probs=72.8
Q ss_pred CeecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .+..+|.. +.+|+.|+|++|.|+.+| .+..+++|+.|+|++| .+..+| .+..+++|+.|+|++|. +.
T Consensus 70 L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~ 144 (605)
T 1m9s_A 70 LFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-IT 144 (605)
T ss_dssp EECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC-CC
T ss_pred EEeeCC-CCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc-cC
Confidence 567777 56666652 237888888888888776 5788888888888875 455554 36677788888887754 44
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccCC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGRL 115 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l~ 115 (305)
.+ ..+..+++|+.|+|++|.+.++ +. +..+.+|.
T Consensus 145 ~l-~~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~ 178 (605)
T 1m9s_A 145 DI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQ 178 (605)
T ss_dssp CC-GGGGSCTTCSEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred Cc-hhhcccCCCCEEECcCCcCCCc-hh-hccCCCCC
Confidence 44 4566777777888877777776 33 55544443
No 118
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=1.2e-08 Score=92.77 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=54.9
Q ss_pred eecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 2 DFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
++++| .++.+|.. +.+|+.|++++|.++.+|. +..+++|+.|++++| .+..+| .+..+++|++|++++|. +..
T Consensus 50 ~l~~~-~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~ 124 (347)
T 4fmz_A 50 VVAGE-KVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISD 124 (347)
T ss_dssp ECCSS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCC
T ss_pred EEeCC-ccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccC
Confidence 45555 55555542 2367777777777776665 667777777777764 444554 35666666666666643 334
Q ss_pred cCccccCCCCCcEeeecCCC
Q 044640 80 FPESLEKMEHLNQINLGRAK 99 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~ 99 (305)
+|. +..+++|+.|++++|.
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCT
T ss_pred chh-hccCCceeEEECCCCC
Confidence 443 5555666666666553
No 119
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.83 E-value=3.2e-09 Score=95.50 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=100.6
Q ss_pred CeecCCCCCcccCC-------CcCCccEEEEecCCCcccC-ccccCCCCCCEEeccccccccc--cc--ccccccccccE
Q 044640 1 IDFSSCVNLTEFPQ-------ISGNIKTLYLFETAIEEVP-SSIECLTNLTLLTISRCTRLKR--VS--TSICKLKSLIW 68 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-------~~~~L~~L~L~~n~i~~lP-~si~~L~~L~~L~L~~c~~l~~--lP--~~i~~l~~L~~ 68 (305)
|+|++|.....+|. ...+|+.|+|++|.|..+| ..++.+++|+.|+|++|+.... ++ ..+..+++|++
T Consensus 122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred EEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 67888854433331 1458999999999999765 6789999999999999764432 33 33468899999
Q ss_pred EEEEecCCCcccCc----cccCCCCCcEeeecCCCcCeeCCCCcccc---ccCC--CCCccccCCCCCccccccCCCCcE
Q 044640 69 LSVHGCLNLESFPE----SLEKMEHLNQINLGRAKITEQRPSSFENE---RGRL--GGPSIILPGSEIPEWFSNQSSGSL 139 (305)
Q Consensus 69 L~l~~c~~l~~lP~----~~~~l~~L~~L~L~~n~i~~l~P~si~~l---~~l~--~l~~~~lpG~~iP~~f~~~~~~~~ 139 (305)
|++++|. +..+|. .++.+++|++|+|++|.+.+..|..+..+ ++|. .+..+.+. .+|.++. . +.
T Consensus 202 L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~--~L 274 (310)
T 4glp_A 202 LALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--A--KL 274 (310)
T ss_dssp CBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--S--CC
T ss_pred EECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--C--CC
Confidence 9999974 555555 25678999999999999998878777665 3444 44444454 5787763 2 33
Q ss_pred EEEEcCCCCCCCccce
Q 044640 140 LTLQMPQHCRQTLVGF 155 (305)
Q Consensus 140 l~i~lp~~~~~~~~gf 155 (305)
..++| ..+++.++
T Consensus 275 ~~L~L---s~N~l~~~ 287 (310)
T 4glp_A 275 RVLDL---SSNRLNRA 287 (310)
T ss_dssp SCEEC---CSCCCCSC
T ss_pred CEEEC---CCCcCCCC
Confidence 34555 34445554
No 120
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=1.4e-08 Score=92.14 Aligned_cols=98 Identities=19% Similarity=0.377 Sum_probs=71.5
Q ss_pred CeecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .++.+|.. +.+|+.|+|++|.++.+| .+..+++|+.|++++| .+..+|. +..+++|+.|++++|..+.
T Consensus 71 L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 71 LNLNGN-QITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp EECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCC
T ss_pred EEccCC-ccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcc
Confidence 467777 66677652 237888888888888875 5888888888888884 4566665 6778888888888876666
Q ss_pred ccCccccCCCCCcEeeecCCCcCee
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.++. +..+++|++|++++|.+..+
T Consensus 147 ~~~~-~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 147 DLSP-LSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred cccc-hhhCCCCcEEEecCCCcCCc
Confidence 5554 66777777777777777665
No 121
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1e-08 Score=93.40 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=74.5
Q ss_pred cEEEEecC-CCcccCccccCCCCCCEEeccccccccccc-ccccccccccEEEEEecCCCcccCccccCCCCCcEeeecC
Q 044640 20 KTLYLFET-AIEEVPSSIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLGR 97 (305)
Q Consensus 20 ~~L~L~~n-~i~~lP~si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~~ 97 (305)
..++++++ .|+.+|. |..+++|+.|+|++++.+..+| ..+.+|++|+.|+|++|......|..++.+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34788888 8999999 9999999999999756777777 5789999999999999865555566789999999999999
Q ss_pred CCcCeeCCCCc
Q 044640 98 AKITEQRPSSF 108 (305)
Q Consensus 98 n~i~~l~P~si 108 (305)
|.|+++ |..+
T Consensus 90 N~l~~~-~~~~ 99 (347)
T 2ifg_A 90 NALESL-SWKT 99 (347)
T ss_dssp SCCSCC-CSTT
T ss_pred Ccccee-CHHH
Confidence 999999 6543
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=2.6e-08 Score=94.76 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=51.8
Q ss_pred CeecCCCCCcccCC-CcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcc
Q 044640 1 IDFSSCVNLTEFPQ-ISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLES 79 (305)
Q Consensus 1 L~Ls~c~~l~~~P~-~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~ 79 (305)
|+|++| .++.+|- .+.+|+.|+|++|.++.+| ++.+++|+.|++++| .+..++ ++.+++|+.|++++|..++.
T Consensus 90 L~Ls~N-~l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 90 LACDSN-KLTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp EECCSS-CCSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCC
T ss_pred EECcCC-CCceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccc
Confidence 456666 4555541 1236677777777777665 666667777777664 344343 44555555555555544444
Q ss_pred cCccccCCCCCcEeeecCCCcCee
Q 044640 80 FPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 80 lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
++ ++.+++|+.|++++|.++++
T Consensus 164 ~~--~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 164 LD--VTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCCCC
T ss_pred cc--cccCCcCCEEECCCCcccee
Confidence 42 34444555555555544444
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=2.9e-08 Score=94.41 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=73.1
Q ss_pred CeecCCCCCcccCCCc--CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQIS--GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~--~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .++.+|... .+|+.|+|++|.|+.+| ++.+++|+.|++++| .+..+| ++.+++|++|++++| .+.
T Consensus 47 L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N-~l~ 119 (457)
T 3bz5_A 47 LDCHNS-SITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN-KLT 119 (457)
T ss_dssp EECCSS-CCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSS-CCS
T ss_pred EEccCC-CcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCC-cCC
Confidence 567777 677777432 37888999998888886 888888999999885 466665 778888999998886 455
Q ss_pred ccCccccCCCCCcEeeecCCCcCee
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.+| ++.+++|++|++++|.++++
T Consensus 120 ~l~--~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 120 KLD--VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSCC
T ss_pred eec--CCCCCcCCEEECCCCcccee
Confidence 565 77888888888888888876
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=1.3e-10 Score=97.76 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=66.2
Q ss_pred CCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeeec
Q 044640 17 GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINLG 96 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L~ 96 (305)
.+|+.|+|++|.|+.+| .+..+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+| .++.+++|+.|+++
T Consensus 48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEES
T ss_pred CCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECC
Confidence 37888899888888888 8888888999998885 56678887777788888888886 455566 46677888888888
Q ss_pred CCCcCee
Q 044640 97 RAKITEQ 103 (305)
Q Consensus 97 ~n~i~~l 103 (305)
+|.+..+
T Consensus 124 ~N~i~~~ 130 (198)
T 1ds9_A 124 NNKITNW 130 (198)
T ss_dssp EEECCCH
T ss_pred CCcCCch
Confidence 8888765
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.74 E-value=2.4e-08 Score=94.74 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=65.9
Q ss_pred CeecCCCCCcccCCC--cCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQI--SGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~--~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|+|++| .++.++.. +.+|+.|++++|.++.++. +..+++|+.|++++| .+..+|. +..+++|+.|++++|. +.
T Consensus 226 L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~ 300 (466)
T 1o6v_A 226 LSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LE 300 (466)
T ss_dssp EECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CS
T ss_pred EECCCC-CcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCc-cc
Confidence 456676 55555533 2377888888888877665 777788888888874 4555555 6677778888877754 34
Q ss_pred ccCccccCCCCCcEeeecCCCcCee
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.++. ++.+++|+.|++++|.+.+.
T Consensus 301 ~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 301 DISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred Cchh-hcCCCCCCEEECcCCcCCCc
Confidence 4443 56677777777777777776
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.69 E-value=6.9e-08 Score=91.59 Aligned_cols=106 Identities=16% Similarity=0.293 Sum_probs=70.6
Q ss_pred CeecCCCCCcccCC--CcCCccEEEEecCCCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc
Q 044640 1 IDFSSCVNLTEFPQ--ISGNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE 78 (305)
Q Consensus 1 L~Ls~c~~l~~~P~--~~~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~ 78 (305)
|++++| .+..++. .+.+|+.|++++|.++.++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|. +.
T Consensus 204 L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~ 278 (466)
T 1o6v_A 204 LIATNN-QISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-IS 278 (466)
T ss_dssp EECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CC
T ss_pred EEecCC-cccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cC
Confidence 456666 4444433 2347888888888888764 47778888888888854 444444 6777888888888864 44
Q ss_pred ccCccccCCCCCcEeeecCCCcCeeCCCCccccccC
Q 044640 79 SFPESLEKMEHLNQINLGRAKITEQRPSSFENERGR 114 (305)
Q Consensus 79 ~lP~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~~l 114 (305)
.+|. +..+++|+.|++++|.+.++ +. +..+++|
T Consensus 279 ~~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 311 (466)
T 1o6v_A 279 NISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNL 311 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTC
T ss_pred cccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCC
Confidence 4544 66778888888888888776 43 4444333
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.66 E-value=1.4e-09 Score=98.44 Aligned_cols=84 Identities=18% Similarity=0.338 Sum_probs=46.3
Q ss_pred CccEEEEecCCCc-c-cCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCc--ccCccccCCCCCcEe
Q 044640 18 NIKTLYLFETAIE-E-VPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLE--SFPESLEKMEHLNQI 93 (305)
Q Consensus 18 ~L~~L~L~~n~i~-~-lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~--~lP~~~~~l~~L~~L 93 (305)
+|+.|+|++|.+. . +|..+..+++|+.|++++|......|..+..+++|++|++++|..+. .+|..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 5566666666555 2 55555666666666666654333445555555666666666653333 244445555556666
Q ss_pred eecCC-CcC
Q 044640 94 NLGRA-KIT 101 (305)
Q Consensus 94 ~L~~n-~i~ 101 (305)
++++| .++
T Consensus 174 ~l~~~~~l~ 182 (336)
T 2ast_B 174 NLSWCFDFT 182 (336)
T ss_dssp ECCCCTTCC
T ss_pred cCCCCCCcC
Confidence 66555 554
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=3.5e-10 Score=95.19 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=85.9
Q ss_pred CccEEEEecC--CCcccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccccCCCCCcEeee
Q 044640 18 NIKTLYLFET--AIEEVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESLEKMEHLNQINL 95 (305)
Q Consensus 18 ~L~~L~L~~n--~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~~L~~L~L 95 (305)
+++.+.+.++ .++++|..+..+++|+.|++++| .+..+| .+..+++|++|++++|. +..+|..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 5666777765 67788889999999999999985 566688 78889999999999974 5688888877889999999
Q ss_pred cCCCcCeeCCCCccccccCC--CCCccccCCCCCcc--ccccCCCCcEEEE
Q 044640 96 GRAKITEQRPSSFENERGRL--GGPSIILPGSEIPE--WFSNQSSGSLLTL 142 (305)
Q Consensus 96 ~~n~i~~l~P~si~~l~~l~--~l~~~~lpG~~iP~--~f~~~~~~~~l~i 142 (305)
++|.++++ | .+..+.++. .+..+.+.+ +|. .+........+.+
T Consensus 101 ~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 101 SYNQIASL-S-GIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEEECCCH-H-HHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEE
T ss_pred cCCcCCcC-C-ccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEe
Confidence 99999987 6 566665554 344444432 333 4544444444444
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.62 E-value=1.4e-09 Score=98.44 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=47.0
Q ss_pred CccEEEEecCCCc-ccCccccCCCCCCEEecccccccc--cccccccccccccEEEEEecCCCcc--cCccccCCC-CCc
Q 044640 18 NIKTLYLFETAIE-EVPSSIECLTNLTLLTISRCTRLK--RVSTSICKLKSLIWLSVHGCLNLES--FPESLEKME-HLN 91 (305)
Q Consensus 18 ~L~~L~L~~n~i~-~lP~si~~L~~L~~L~L~~c~~l~--~lP~~i~~l~~L~~L~l~~c~~l~~--lP~~~~~l~-~L~ 91 (305)
+|+.|+|++|.+. ..|..++.+++|+.|++++|..+. .+|..+..+++|+.|++++|..+.. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 5666666666665 455556666666666666654443 2455555566666666666523332 455555566 666
Q ss_pred EeeecCC
Q 044640 92 QINLGRA 98 (305)
Q Consensus 92 ~L~L~~n 98 (305)
+|++++|
T Consensus 199 ~L~l~~~ 205 (336)
T 2ast_B 199 QLNLSGY 205 (336)
T ss_dssp EEECCSC
T ss_pred EEEeCCC
Confidence 6666666
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.43 E-value=3.7e-08 Score=91.06 Aligned_cols=86 Identities=8% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCccEEEEecCCCc--ccC---ccccCCCCCCEEecccccccc------cccccccccccccEEEEEecCCC----cccC
Q 044640 17 GNIKTLYLFETAIE--EVP---SSIECLTNLTLLTISRCTRLK------RVSTSICKLKSLIWLSVHGCLNL----ESFP 81 (305)
Q Consensus 17 ~~L~~L~L~~n~i~--~lP---~si~~L~~L~~L~L~~c~~l~------~lP~~i~~l~~L~~L~l~~c~~l----~~lP 81 (305)
.+|+.|+|++|.|. .+| ..+..+++|+.|+|++|. +. .+|..+..+++|+.|++++|... ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 68889999999886 455 567788899999999864 43 34446778889999999987642 6678
Q ss_pred ccccCCCCCcEeeecCCCcCee
Q 044640 82 ESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~~l 103 (305)
..+..+++|+.|+|++|.+...
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHccCCCcCEEECCCCCCchh
Confidence 8888888999999999888754
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.37 E-value=7.5e-08 Score=88.99 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=90.4
Q ss_pred CeecCCCCC-cccCC------CcCCccEEEEecCCCc------ccCccccCCCCCCEEeccccccc----cccccccccc
Q 044640 1 IDFSSCVNL-TEFPQ------ISGNIKTLYLFETAIE------EVPSSIECLTNLTLLTISRCTRL----KRVSTSICKL 63 (305)
Q Consensus 1 L~Ls~c~~l-~~~P~------~~~~L~~L~L~~n~i~------~lP~si~~L~~L~~L~L~~c~~l----~~lP~~i~~l 63 (305)
|+|++|..- ..+|. ...+|+.|+|++|.|. -+|..+..+++|+.|+|++|... ..+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 578888332 34552 2248999999999998 24558899999999999997642 6788889999
Q ss_pred ccccEEEEEecCCCcc----cCccc--cCCCCCcEeeecCCCcCe-----eCCCCc-cccccCC--CCCccccCC
Q 044640 64 KSLIWLSVHGCLNLES----FPESL--EKMEHLNQINLGRAKITE-----QRPSSF-ENERGRL--GGPSIILPG 124 (305)
Q Consensus 64 ~~L~~L~l~~c~~l~~----lP~~~--~~l~~L~~L~L~~n~i~~-----l~P~si-~~l~~l~--~l~~~~lpG 124 (305)
++|+.|++++|..... +|..+ +.+++|+.|+|++|.+.. + |..+ .++++|. .+..+.+.+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccCCcCCc
Confidence 9999999999875543 56666 448999999999999998 5 7666 3345444 344444443
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.32 E-value=3.4e-06 Score=76.91 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=57.7
Q ss_pred CeecCCCCCcccCCC-c---CCccEEEEecCCCc-ccCc-cccCCCCCCEEeccccccccccc-ccccccccccEEEEEe
Q 044640 1 IDFSSCVNLTEFPQI-S---GNIKTLYLFETAIE-EVPS-SIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHG 73 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-~---~~L~~L~L~~n~i~-~lP~-si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~ 73 (305)
|+|++| +++.+|.. + .+|+.|+|++|.|. .+|. .+.++++|+.+.+.+++.+..+| ..+..+++|++|++++
T Consensus 35 L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 35 LRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp EEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred EEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 578898 78999863 3 38999999999985 5665 46888888876666557777774 5678889999999988
Q ss_pred cCC
Q 044640 74 CLN 76 (305)
Q Consensus 74 c~~ 76 (305)
|..
T Consensus 114 n~l 116 (350)
T 4ay9_X 114 TGI 116 (350)
T ss_dssp ECC
T ss_pred ccc
Confidence 643
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.07 E-value=6e-07 Score=82.30 Aligned_cols=102 Identities=11% Similarity=0.157 Sum_probs=60.7
Q ss_pred eecCCCCCcccCCCcC---CccEEEEecCCCcccC-----ccccCCC-CCCEEeccccccccccccccccc-----cccc
Q 044640 2 DFSSCVNLTEFPQISG---NIKTLYLFETAIEEVP-----SSIECLT-NLTLLTISRCTRLKRVSTSICKL-----KSLI 67 (305)
Q Consensus 2 ~Ls~c~~l~~~P~~~~---~L~~L~L~~n~i~~lP-----~si~~L~-~L~~L~L~~c~~l~~lP~~i~~l-----~~L~ 67 (305)
.|+.+..-+.+|..+. +|+.|+|++|.|..++ ..+..++ +|+.|+|++|......+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 3555533344444332 5777888888777665 4566777 78888887764333334444443 7777
Q ss_pred EEEEEecCCCcccCcc----ccCC-CCCcEeeecCCCcCee
Q 044640 68 WLSVHGCLNLESFPES----LEKM-EHLNQINLGRAKITEQ 103 (305)
Q Consensus 68 ~L~l~~c~~l~~lP~~----~~~l-~~L~~L~L~~n~i~~l 103 (305)
.|++++|......+.. +..+ ++|+.|+|++|.+...
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 7777776533333332 3333 6777777777777655
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.93 E-value=1.4e-06 Score=79.79 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=62.0
Q ss_pred CeecCCCCCcccCCC-----c----CCccEEEEecCCCcccCcc-----ccC-CCCCCEEecccccccc----ccccccc
Q 044640 1 IDFSSCVNLTEFPQI-----S----GNIKTLYLFETAIEEVPSS-----IEC-LTNLTLLTISRCTRLK----RVSTSIC 61 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~-----~----~~L~~L~L~~n~i~~lP~s-----i~~-L~~L~~L~L~~c~~l~----~lP~~i~ 61 (305)
|+|++| .++..+.. + .+|+.|+|++|.|+..+.. +.. .++|+.|+|++|.... .++..+.
T Consensus 85 L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 85 LNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 567777 44433321 1 4788888888888765432 333 3588888888854331 4455555
Q ss_pred ccc-cccEEEEEecCCCcccCc----cccCC-CCCcEeeecCCCcCe
Q 044640 62 KLK-SLIWLSVHGCLNLESFPE----SLEKM-EHLNQINLGRAKITE 102 (305)
Q Consensus 62 ~l~-~L~~L~l~~c~~l~~lP~----~~~~l-~~L~~L~L~~n~i~~ 102 (305)
.++ +|+.|++++|......+. .+..+ ++|+.|+|++|.+..
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 555 788888888654333332 23344 478888888887776
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.83 E-value=3.7e-06 Score=78.95 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCccEEEEecCCCc-----ccCccccCCCCCCEEecccccccccccccc-cccc----cccEEEEEecCCC----cccCc
Q 044640 17 GNIKTLYLFETAIE-----EVPSSIECLTNLTLLTISRCTRLKRVSTSI-CKLK----SLIWLSVHGCLNL----ESFPE 82 (305)
Q Consensus 17 ~~L~~L~L~~n~i~-----~lP~si~~L~~L~~L~L~~c~~l~~lP~~i-~~l~----~L~~L~l~~c~~l----~~lP~ 82 (305)
.+|+.|+|++|.+. .+|..+..+++|+.|++++|......+..+ ..++ +|++|++++|... ..+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 36777777777776 456666677777777777754222112111 1233 5777777766533 24566
Q ss_pred cccCCCCCcEeeecCCCcC
Q 044640 83 SLEKMEHLNQINLGRAKIT 101 (305)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~ 101 (305)
.+..+++|++|++++|.+.
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTTSCTTCCEEECCSSBCH
T ss_pred HHccCCceeEEECCCCcCc
Confidence 6666666777777666654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.82 E-value=1.5e-06 Score=81.65 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=69.5
Q ss_pred CeecCCCCCcc-----cCCCc---CCccEEEEecCCCcc-----cCcccc-CCCCCCEEecccccccc----cccccccc
Q 044640 1 IDFSSCVNLTE-----FPQIS---GNIKTLYLFETAIEE-----VPSSIE-CLTNLTLLTISRCTRLK----RVSTSICK 62 (305)
Q Consensus 1 L~Ls~c~~l~~-----~P~~~---~~L~~L~L~~n~i~~-----lP~si~-~L~~L~~L~L~~c~~l~----~lP~~i~~ 62 (305)
|+|++| .++. +|..+ .+|+.|+|++|.|.. +...+. ..++|+.|++++|.... .+|..+..
T Consensus 261 L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 261 LWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 467787 5655 56543 478888998888862 222222 23688888888875332 25666667
Q ss_pred cccccEEEEEecCCCcccCccc----cC-CCCCcEeeecCCCcCe----eCCCCccccccC
Q 044640 63 LKSLIWLSVHGCLNLESFPESL----EK-MEHLNQINLGRAKITE----QRPSSFENERGR 114 (305)
Q Consensus 63 l~~L~~L~l~~c~~l~~lP~~~----~~-l~~L~~L~L~~n~i~~----l~P~si~~l~~l 114 (305)
+++|+.|++++|.....-+..+ .. .++|+.|++++|.++. .+|..+...++|
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 7888888888874332222222 21 5678888888888773 225555444444
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.80 E-value=4.4e-06 Score=81.01 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=31.2
Q ss_pred cCCccEEEEecCCCc-----ccCccccCCCCCCEEecccccccccccccccccccccEEEEEe
Q 044640 16 SGNIKTLYLFETAIE-----EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHG 73 (305)
Q Consensus 16 ~~~L~~L~L~~n~i~-----~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~ 73 (305)
..+|+.|+|++|.++ .++..+..+++|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECB
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccc
Confidence 345666666666554 33444455666666666664 3334555555555555555543
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=3.2e-06 Score=78.19 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=53.9
Q ss_pred CCccEEEEecCCCccc-----Cccc-cCCCCCCEEeccccccc----ccccccccccccccEEEEEecCCCc----ccCc
Q 044640 17 GNIKTLYLFETAIEEV-----PSSI-ECLTNLTLLTISRCTRL----KRVSTSICKLKSLIWLSVHGCLNLE----SFPE 82 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~l-----P~si-~~L~~L~~L~L~~c~~l----~~lP~~i~~l~~L~~L~l~~c~~l~----~lP~ 82 (305)
.+|+.|+|++|.|... ...+ ...++|+.|+|++|... ..++..+..+++|++|++++|..-. .++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 3678888888877632 2222 24567888888876421 2345555667778888888765321 2345
Q ss_pred cccCCCCCcEeeecCCCcCe
Q 044640 83 SLEKMEHLNQINLGRAKITE 102 (305)
Q Consensus 83 ~~~~l~~L~~L~L~~n~i~~ 102 (305)
.+...++|+.|+|++|.+..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCCcCeEECCCCCCCH
Confidence 55566678888888877764
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.00013 Score=65.63 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCccEEEEecCCCcccCcc-ccCCCCCCEEecccccccccccc-ccccccccc-EEEEEecCCCcccC-ccccCCCCCcE
Q 044640 17 GNIKTLYLFETAIEEVPSS-IECLTNLTLLTISRCTRLKRVST-SICKLKSLI-WLSVHGCLNLESFP-ESLEKMEHLNQ 92 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~-~L~l~~c~~l~~lP-~~~~~l~~L~~ 92 (305)
.+|+.|+|.+|.++.+|.. +..+++|+.|+|.++ +..++. .+.++++|+ .|.+.. .+..++ ..|..+.+|+.
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 4789999999999999875 788999999999984 777775 577889999 999987 466665 67889999999
Q ss_pred eeecCCCcCeeCCCCcccccc
Q 044640 93 INLGRAKITEQRPSSFENERG 113 (305)
Q Consensus 93 L~L~~n~i~~l~P~si~~l~~ 113 (305)
++++.|+++.+.+..+....+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCC
T ss_pred EEeCCCccCccchhhhcCCcc
Confidence 999999999883334544433
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=7.8e-05 Score=61.44 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=60.4
Q ss_pred CccEEEEecCCCcc-cCccccCCCCCCEEecccccccccc-ccccccc----ccccEEEEEecCCCcccC-ccccCCCCC
Q 044640 18 NIKTLYLFETAIEE-VPSSIECLTNLTLLTISRCTRLKRV-STSICKL----KSLIWLSVHGCLNLESFP-ESLEKMEHL 90 (305)
Q Consensus 18 ~L~~L~L~~n~i~~-lP~si~~L~~L~~L~L~~c~~l~~l-P~~i~~l----~~L~~L~l~~c~~l~~lP-~~~~~l~~L 90 (305)
+|+.|+|++|.|+. =-..+..+++|+.|+|++|..++.- -..+..+ ++|+.|++++|..+..-- ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999883 2355789999999999999866431 1123333 479999999998765411 234568999
Q ss_pred cEeeecCCC
Q 044640 91 NQINLGRAK 99 (305)
Q Consensus 91 ~~L~L~~n~ 99 (305)
++|++++..
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999998753
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.58 E-value=7.3e-06 Score=79.45 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=19.7
Q ss_pred ccccccEEEEEecCCC----cccCccccCCCCCcEeeecCCCcCee
Q 044640 62 KLKSLIWLSVHGCLNL----ESFPESLEKMEHLNQINLGRAKITEQ 103 (305)
Q Consensus 62 ~l~~L~~L~l~~c~~l----~~lP~~~~~l~~L~~L~L~~n~i~~l 103 (305)
.+++|+.|++++|... ..++..+.++++|+.|+++++.+.++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 3344444444443322 23333344555566666666555443
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=3.4e-05 Score=67.98 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=47.7
Q ss_pred EEEecCCCcccCccc----cCCCCCCEEecccccccc---cccccccccccccEEEEEecCCCcccCccccCCC--CCcE
Q 044640 22 LYLFETAIEEVPSSI----ECLTNLTLLTISRCTRLK---RVSTSICKLKSLIWLSVHGCLNLESFPESLEKME--HLNQ 92 (305)
Q Consensus 22 L~L~~n~i~~lP~si----~~L~~L~~L~L~~c~~l~---~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~~~l~--~L~~ 92 (305)
++++.|....++..+ .++++|+.|+|++|+ +. .+|..+..+++|+.|+|++|. +..+ ..+..+. +|+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcce
Confidence 555666544444322 456777888888753 33 344555677788888887753 4443 2233344 7888
Q ss_pred eeecCCCcCee
Q 044640 93 INLGRAKITEQ 103 (305)
Q Consensus 93 L~L~~n~i~~l 103 (305)
|+|++|.+.+-
T Consensus 225 L~L~~Npl~~~ 235 (267)
T 3rw6_A 225 LWLDGNSLCDT 235 (267)
T ss_dssp EECTTSTTGGG
T ss_pred EEccCCcCccc
Confidence 88888887753
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.51 E-value=1.3e-06 Score=84.74 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCccEEEEecC-CCcc--cCccccCCCCCCEEecccccccc----cccccccccccccEEEEEecC-CC--cccCccccC
Q 044640 17 GNIKTLYLFET-AIEE--VPSSIECLTNLTLLTISRCTRLK----RVSTSICKLKSLIWLSVHGCL-NL--ESFPESLEK 86 (305)
Q Consensus 17 ~~L~~L~L~~n-~i~~--lP~si~~L~~L~~L~L~~c~~l~----~lP~~i~~l~~L~~L~l~~c~-~l--~~lP~~~~~ 86 (305)
.+|+.|+|++| .+.. ++.-+..+++|+.|++++|.... .++.....+++|+.|++++|. .+ ..++.....
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 46777777766 4442 44444566677777777654111 122222344556666665553 01 112222233
Q ss_pred CCCCcEeeecCC
Q 044640 87 MEHLNQINLGRA 98 (305)
Q Consensus 87 l~~L~~L~L~~n 98 (305)
+++|++|+++++
T Consensus 210 ~~~L~~L~L~~~ 221 (594)
T 2p1m_B 210 CPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCEEECCTT
T ss_pred CCCCcEEecCCC
Confidence 455555555544
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.50 E-value=2.9e-05 Score=75.18 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=64.5
Q ss_pred CCccEEEEecCCCc-ccCcccc-CCCCCCEEeccccccccc--ccccccccccccEEEEEecCCC----cccCccccCCC
Q 044640 17 GNIKTLYLFETAIE-EVPSSIE-CLTNLTLLTISRCTRLKR--VSTSICKLKSLIWLSVHGCLNL----ESFPESLEKME 88 (305)
Q Consensus 17 ~~L~~L~L~~n~i~-~lP~si~-~L~~L~~L~L~~c~~l~~--lP~~i~~l~~L~~L~l~~c~~l----~~lP~~~~~l~ 88 (305)
.+|+.|+|++|.+. ..+..+. .+++|+.|+|++|..+.. ++..+..+++|++|++++|... ..++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 48999999999888 4555664 689999999999876654 6666667899999999998622 22444555788
Q ss_pred CCcEeeecCCC
Q 044640 89 HLNQINLGRAK 99 (305)
Q Consensus 89 ~L~~L~L~~n~ 99 (305)
+|+.|+++++.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 99999999876
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.43 E-value=1.5e-05 Score=73.57 Aligned_cols=86 Identities=7% Similarity=0.048 Sum_probs=58.8
Q ss_pred CCccEEEEecCCCcc--cCccccCCCCCCEEecccccccc----cccccc-cccccccEEEEEecCCCc----ccCcccc
Q 044640 17 GNIKTLYLFETAIEE--VPSSIECLTNLTLLTISRCTRLK----RVSTSI-CKLKSLIWLSVHGCLNLE----SFPESLE 85 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~--lP~si~~L~~L~~L~L~~c~~l~----~lP~~i-~~l~~L~~L~l~~c~~l~----~lP~~~~ 85 (305)
.+|+.|+|++|.|.. +..-...+.+|+.|+|++|.... .+...+ ...++|+.|++++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 478999999999873 22223446688999999964322 122222 235789999999975322 3555567
Q ss_pred CCCCCcEeeecCCCcCe
Q 044640 86 KMEHLNQINLGRAKITE 102 (305)
Q Consensus 86 ~l~~L~~L~L~~n~i~~ 102 (305)
.+++|++|+|++|.+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp TCSSCCEEECTTSSCHH
T ss_pred cCCCcCEEeCCCCCCCc
Confidence 78889999999998874
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.001 Score=59.76 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=71.1
Q ss_pred CeecCCCCCcccCCCc----CCccEEEEecCCCcccCcc-ccCCCCCC-EEeccccccccccc-ccccccccccEEEEEe
Q 044640 1 IDFSSCVNLTEFPQIS----GNIKTLYLFETAIEEVPSS-IECLTNLT-LLTISRCTRLKRVS-TSICKLKSLIWLSVHG 73 (305)
Q Consensus 1 L~Ls~c~~l~~~P~~~----~~L~~L~L~~n~i~~lP~s-i~~L~~L~-~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~ 73 (305)
|+|++| .++.+|+.. .+|+.|+|..| ++.++.. +..+.+|+ .|++.+ .+..++ .++.++++|+.|++++
T Consensus 231 l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 231 LDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp EECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred EECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence 356665 577888653 38999999997 8888765 78999999 999987 577775 5788899999999987
Q ss_pred cCCCcccCc-cccCCCCCcEeee
Q 044640 74 CLNLESFPE-SLEKMEHLNQINL 95 (305)
Q Consensus 74 c~~l~~lP~-~~~~l~~L~~L~L 95 (305)
+ .+..++. .+.++++|+.++.
T Consensus 307 n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 307 D-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp S-CCCEECTTTTCTTCCCCEEEC
T ss_pred C-ccCccchhhhcCCcchhhhcc
Confidence 4 5666664 7888999998863
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.04 E-value=0.00013 Score=64.20 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=49.5
Q ss_pred CCccEEEEecCCCccc---CccccCCCCCCEEecccccccccccccccccc--cccEEEEEecCCCcccCc-------cc
Q 044640 17 GNIKTLYLFETAIEEV---PSSIECLTNLTLLTISRCTRLKRVSTSICKLK--SLIWLSVHGCLNLESFPE-------SL 84 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~l---P~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~--~L~~L~l~~c~~l~~lP~-------~~ 84 (305)
.+|+.|+|++|.|+.+ |..++.+++|+.|+|++| .+..+. .+..+. +|+.|++++|.....+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 3678888888877754 455677888888888874 454442 234444 788888888766555553 24
Q ss_pred cCCCCCcEee
Q 044640 85 EKMEHLNQIN 94 (305)
Q Consensus 85 ~~l~~L~~L~ 94 (305)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5566676654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.01 E-value=0.00046 Score=63.37 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=46.9
Q ss_pred CCccEEEEecCCCcccCccccCCCCCCEEeccccccccccccccc--ccccccEEEEEecC-------CCcccCccc--c
Q 044640 17 GNIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVSTSIC--KLKSLIWLSVHGCL-------NLESFPESL--E 85 (305)
Q Consensus 17 ~~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~--~l~~L~~L~l~~c~-------~l~~lP~~~--~ 85 (305)
.+|+.|+|+++.-..+|. +. +++|+.|+|..|.........+. .+++|+.|+|+.+. .+..+...+ +
T Consensus 172 P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 478888888873224444 43 77888888876542221112222 56788888875321 111222222 2
Q ss_pred CCCCCcEeeecCCCcC
Q 044640 86 KMEHLNQINLGRAKIT 101 (305)
Q Consensus 86 ~l~~L~~L~L~~n~i~ 101 (305)
.+++|++|+|.+|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp TCTTCCEEEEESCTTH
T ss_pred CCCCcCEEeCCCCCCc
Confidence 4677888888777665
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.86 E-value=0.00035 Score=57.72 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=60.7
Q ss_pred CccEEEEecC-CCc-----ccCccccCCCCCCEEeccccccc----ccccccccccccccEEEEEecCCCc----ccCcc
Q 044640 18 NIKTLYLFET-AIE-----EVPSSIECLTNLTLLTISRCTRL----KRVSTSICKLKSLIWLSVHGCLNLE----SFPES 83 (305)
Q Consensus 18 ~L~~L~L~~n-~i~-----~lP~si~~L~~L~~L~L~~c~~l----~~lP~~i~~l~~L~~L~l~~c~~l~----~lP~~ 83 (305)
+|+.|+|++| .|. .+...+...++|+.|+|++|..- ..+...+...++|++|++++|..-. .+...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 6888999998 775 35666777888999999986422 2344455556789999998875432 25556
Q ss_pred ccCCCCCcEeee--cCCCcCe
Q 044640 84 LEKMEHLNQINL--GRAKITE 102 (305)
Q Consensus 84 ~~~l~~L~~L~L--~~n~i~~ 102 (305)
+...++|++|+| ++|.+..
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCH
T ss_pred HHhCCCceEEEecCCCCCCCH
Confidence 667778999999 7787764
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.64 E-value=0.00046 Score=56.95 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=64.1
Q ss_pred CCccEEEEecCCCc-----ccCccccCCCCCCEEeccccccc----ccccccccccccccEEEE--EecCCCc----ccC
Q 044640 17 GNIKTLYLFETAIE-----EVPSSIECLTNLTLLTISRCTRL----KRVSTSICKLKSLIWLSV--HGCLNLE----SFP 81 (305)
Q Consensus 17 ~~L~~L~L~~n~i~-----~lP~si~~L~~L~~L~L~~c~~l----~~lP~~i~~l~~L~~L~l--~~c~~l~----~lP 81 (305)
.+|+.|+|++|.|. .+...+...+.|+.|+|++|..- ..+...+...++|+.|++ ++|..-. .+.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 37999999999987 35666777789999999996422 235666777789999999 6664332 144
Q ss_pred ccccCCCCCcEeeecCCCcC
Q 044640 82 ESLEKMEHLNQINLGRAKIT 101 (305)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i~ 101 (305)
+.+...++|++|+|++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 55566789999999999875
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.44 E-value=0.0019 Score=53.07 Aligned_cols=78 Identities=13% Similarity=0.222 Sum_probs=53.8
Q ss_pred CeecCCCCCccc--C--CCcCCccEEEEecCC-Cc-ccCccccCC----CCCCEEecccccccccc-cccccccccccEE
Q 044640 1 IDFSSCVNLTEF--P--QISGNIKTLYLFETA-IE-EVPSSIECL----TNLTLLTISRCTRLKRV-STSICKLKSLIWL 69 (305)
Q Consensus 1 L~Ls~c~~l~~~--P--~~~~~L~~L~L~~n~-i~-~lP~si~~L----~~L~~L~L~~c~~l~~l-P~~i~~l~~L~~L 69 (305)
|||++|. ++.. . ....+|+.|+|++|. |+ .--..|..+ ++|+.|+|++|.+++.- -..+..+++|+.|
T Consensus 66 LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L 144 (176)
T 3e4g_A 66 IDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYL 144 (176)
T ss_dssp EEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEE
T ss_pred EeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEE
Confidence 5888985 5431 1 123489999999994 66 222335544 37999999999876531 1235578999999
Q ss_pred EEEecCCCcc
Q 044640 70 SVHGCLNLES 79 (305)
Q Consensus 70 ~l~~c~~l~~ 79 (305)
++++|..+..
T Consensus 145 ~L~~c~~Itd 154 (176)
T 3e4g_A 145 FLSDLPGVKE 154 (176)
T ss_dssp EEESCTTCCC
T ss_pred ECCCCCCCCc
Confidence 9999987654
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.08 E-value=0.0049 Score=47.88 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCc--ccCCCcC-CccEEEEecCCCcccCcc-ccCCCCCCEEecccc
Q 044640 8 NLT--EFPQISG-NIKTLYLFETAIEEVPSS-IECLTNLTLLTISRC 50 (305)
Q Consensus 8 ~l~--~~P~~~~-~L~~L~L~~n~i~~lP~s-i~~L~~L~~L~L~~c 50 (305)
.|+ .+|..+. +|+.|+|++|.|+.||.. +..+.+|+.|+|.+|
T Consensus 19 ~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 19 GLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 455 6665443 677777777777766654 356666667766664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.90 E-value=0.046 Score=49.94 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCccEEEEecCCCc----------ccCccccCCCCCCEEecccccccccccccccccccccEEEEEecCCCcccCccc--
Q 044640 17 GNIKTLYLFETAIE----------EVPSSIECLTNLTLLTISRCTRLKRVSTSICKLKSLIWLSVHGCLNLESFPESL-- 84 (305)
Q Consensus 17 ~~L~~L~L~~n~i~----------~lP~si~~L~~L~~L~L~~c~~l~~lP~~i~~l~~L~~L~l~~c~~l~~lP~~~-- 84 (305)
.+|+.|.+.+.... .+...+..+++|+.|.|++|..+ .++. + .+++|+.|++..|.........+
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 37888888654332 24445567788999999886433 3444 3 37889999998775432222222
Q ss_pred cCCCCCcEeeec
Q 044640 85 EKMEHLNQINLG 96 (305)
Q Consensus 85 ~~l~~L~~L~L~ 96 (305)
..+++|++|+|+
T Consensus 216 ~~lp~L~~L~L~ 227 (362)
T 2ra8_A 216 SDLPNLEKLVLY 227 (362)
T ss_dssp SBCTTCCEEEEE
T ss_pred ccCCCCcEEEEe
Confidence 257888888885
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.01 E-value=0.25 Score=45.56 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=34.5
Q ss_pred CccEEEEecCCCcccCccccCCCCCCEEecccccccccccc-cccccccccEEEEEe
Q 044640 18 NIKTLYLFETAIEEVPSSIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHG 73 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~ 73 (305)
+|+.++|.+|.++.+|...-..++|+.+.|.. .+..++. .+.++++|+.+.+..
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 68888888888888877655567777777764 2444443 344455555555543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.52 E-value=0.083 Score=40.72 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=27.4
Q ss_pred EEEEecCCCc--ccCccccCCCCCCEEeccccccccccccc-ccccccccEEEEEe
Q 044640 21 TLYLFETAIE--EVPSSIECLTNLTLLTISRCTRLKRVSTS-ICKLKSLIWLSVHG 73 (305)
Q Consensus 21 ~L~L~~n~i~--~lP~si~~L~~L~~L~L~~c~~l~~lP~~-i~~l~~L~~L~l~~ 73 (305)
.++.+++.++ .+|..|. .+|+.|+|++ +.+..+|.. +..+++|+.|+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 4666666666 6665432 3466666666 345555543 23444555555544
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.36 E-value=0.42 Score=43.99 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=62.4
Q ss_pred CccEEEEecCCCcccCc-cccCCCCCCEEeccccccc----cccc-ccccccccccEEEEEecCCCcccC-ccccCCCCC
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRL----KRVS-TSICKLKSLIWLSVHGCLNLESFP-ESLEKMEHL 90 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l----~~lP-~~i~~l~~L~~L~l~~c~~l~~lP-~~~~~l~~L 90 (305)
+|+.+.| .+.++.++. .+.++++|+.+.+.++... ..++ ..+.++++|+.+.+.. .+..++ ..+..+.+|
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCc
Confidence 6888888 456787754 5788999999999874321 1344 4577788999999874 366665 457788899
Q ss_pred cEeeecCCCcCeeCCCCcccc
Q 044640 91 NQINLGRAKITEQRPSSFENE 111 (305)
Q Consensus 91 ~~L~L~~n~i~~l~P~si~~l 111 (305)
+.+.|..+ ++.+-+..+...
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS
T ss_pred cEEEECcc-ccEEcHHhCCCC
Confidence 99988544 666634445444
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.42 E-value=2.4 Score=38.34 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=42.7
Q ss_pred CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccC-ccccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFP-ESLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP-~~~~~l~~L~~L~ 94 (305)
+|+.+.+..+ +..+.. .+.++..|+.+.+.. .+..++. .+.++.+|+.+.+.. .++.+. ..+..+.+|+.+.
T Consensus 266 ~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 266 YLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEE
T ss_pred cccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEE
Confidence 4555655433 233332 355677777777753 4555554 345567777777754 244454 3466677777777
Q ss_pred ec
Q 044640 95 LG 96 (305)
Q Consensus 95 L~ 96 (305)
+.
T Consensus 341 ip 342 (394)
T 4gt6_A 341 IP 342 (394)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.45 E-value=0.44 Score=39.54 Aligned_cols=81 Identities=9% Similarity=0.057 Sum_probs=41.0
Q ss_pred CccEEEEecC-CCc-----ccCccccCCCCCCEEeccccccc----ccccccccccccccEEEEEecCCCc----ccCcc
Q 044640 18 NIKTLYLFET-AIE-----EVPSSIECLTNLTLLTISRCTRL----KRVSTSICKLKSLIWLSVHGCLNLE----SFPES 83 (305)
Q Consensus 18 ~L~~L~L~~n-~i~-----~lP~si~~L~~L~~L~L~~c~~l----~~lP~~i~~l~~L~~L~l~~c~~l~----~lP~~ 83 (305)
.|+.|+|+++ .|. .+-..+..-+.|+.|+|++|..- ..|...+..=+.|+.|+|++|..-. .+-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4666777664 553 23444555566777777664321 1233333333566677766653221 12223
Q ss_pred ccCCCCCcEeeecCC
Q 044640 84 LEKMEHLNQINLGRA 98 (305)
Q Consensus 84 ~~~l~~L~~L~L~~n 98 (305)
+..-..|+.|+|+++
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 333445666666543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=80.63 E-value=0.42 Score=39.62 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=57.0
Q ss_pred CccEEEEecCCCc-----ccCccccCCCCCCEEeccccccc----ccccccccccccccEEEEEecCC--Cc-----ccC
Q 044640 18 NIKTLYLFETAIE-----EVPSSIECLTNLTLLTISRCTRL----KRVSTSICKLKSLIWLSVHGCLN--LE-----SFP 81 (305)
Q Consensus 18 ~L~~L~L~~n~i~-----~lP~si~~L~~L~~L~L~~c~~l----~~lP~~i~~l~~L~~L~l~~c~~--l~-----~lP 81 (305)
.|+.|+|++|.|. .|-..+..-+.|+.|+|++|..- ..|-+.+..=+.|+.|+|++|.. ++ .+-
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 6899999999987 34555667789999999995422 23444455556799999987532 22 233
Q ss_pred ccccCCCCCcEeeecCCCc
Q 044640 82 ESLEKMEHLNQINLGRAKI 100 (305)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~i 100 (305)
+.+..-+.|..|+++.+.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 3444556788898876653
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=75.95 E-value=4.5 Score=36.50 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=56.8
Q ss_pred CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccC-ccccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFP-ESLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP-~~~~~l~~L~~L~ 94 (305)
+|+.+.+..+ ++.++. .+.++++|+.+++.. .+..+.. ++.++++|+.+.+..+ +..++ ..+..+.+|+.++
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEE
Confidence 6888888654 777765 478899999999975 4667754 5778899999998753 66665 4678889999998
Q ss_pred ecC
Q 044640 95 LGR 97 (305)
Q Consensus 95 L~~ 97 (305)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 854
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.21 E-value=5.3 Score=36.00 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=52.7
Q ss_pred cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccC-ccccCCCCCcEeeecCCCcCeeCCCCccccc
Q 044640 35 SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFP-ESLEKMEHLNQINLGRAKITEQRPSSFENER 112 (305)
Q Consensus 35 si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP-~~~~~l~~L~~L~L~~n~i~~l~P~si~~l~ 112 (305)
.+..+.+|+.+.+.. .+..++. ++.++.+|+.+++.. .++.++ ..+.++.+|+.+.+..+ ++.+-...+....
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 356788999998875 3666654 466789999999864 366665 56788999999998665 6666333444444
Q ss_pred cC
Q 044640 113 GR 114 (305)
Q Consensus 113 ~l 114 (305)
+|
T Consensus 367 ~L 368 (394)
T 4fs7_A 367 NL 368 (394)
T ss_dssp TC
T ss_pred CC
Confidence 33
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=72.77 E-value=16 Score=32.34 Aligned_cols=81 Identities=11% Similarity=0.218 Sum_probs=36.6
Q ss_pred CccEEEEecCCCcccCc-cccCCCCCCEEecccccccccccc-cccccccccEEEEEecCCCcccCc-cccCCCCCcEee
Q 044640 18 NIKTLYLFETAIEEVPS-SIECLTNLTLLTISRCTRLKRVST-SICKLKSLIWLSVHGCLNLESFPE-SLEKMEHLNQIN 94 (305)
Q Consensus 18 ~L~~L~L~~n~i~~lP~-si~~L~~L~~L~L~~c~~l~~lP~-~i~~l~~L~~L~l~~c~~l~~lP~-~~~~l~~L~~L~ 94 (305)
+|+.+.+..+ ++.++. .+..+..|+.+.+.. .+..+.. .+.+..+|+.+.+.. .+..++. .+..+.+|+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEE
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccccccccccccccc
Confidence 3444444322 333322 234555566555543 1333332 233445555555543 2333332 344555555555
Q ss_pred ecCCCcCee
Q 044640 95 LGRAKITEQ 103 (305)
Q Consensus 95 L~~n~i~~l 103 (305)
+..+.++.+
T Consensus 293 l~~~~i~~I 301 (379)
T 4h09_A 293 MDNSAIETL 301 (379)
T ss_dssp ECCTTCCEE
T ss_pred cccccccee
Confidence 555555554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=66.15 E-value=16 Score=32.79 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=58.2
Q ss_pred cccCCCCCCEEeccccccccccc-ccccccccccEEEEEecCCCcccCc-cccCCCCCcEeeecCCCcCeeCCCCccccc
Q 044640 35 SIECLTNLTLLTISRCTRLKRVS-TSICKLKSLIWLSVHGCLNLESFPE-SLEKMEHLNQINLGRAKITEQRPSSFENER 112 (305)
Q Consensus 35 si~~L~~L~~L~L~~c~~l~~lP-~~i~~l~~L~~L~l~~c~~l~~lP~-~~~~l~~L~~L~L~~n~i~~l~P~si~~l~ 112 (305)
.+..+..|+.+.+.. ....+. ..+.++++|+.+.+.. .+..+++ .+..+.+|+.+.+..+ ++.+-...+....
T Consensus 260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 356677888888865 233343 3456778899988863 4666664 5778889999988643 5555233444444
Q ss_pred cCCCCCccccCCC--CCc-cccccCCCCcEEEE
Q 044640 113 GRLGGPSIILPGS--EIP-EWFSNQSSGSLLTL 142 (305)
Q Consensus 113 ~l~~l~~~~lpG~--~iP-~~f~~~~~~~~l~i 142 (305)
+| ..+.+|.+ .|+ ..|.+-.....+++
T Consensus 335 ~L---~~i~ip~sv~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 335 QL---ERIAIPSSVTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TC---CEEEECTTCCBCCGGGGTTCTTCCEEEE
T ss_pred CC---CEEEECcccCEEhHhHhhCCCCCCEEEE
Confidence 33 33344443 344 34544444444444
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=51.96 E-value=64 Score=28.31 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.2
Q ss_pred ccCCCCCcEeee
Q 044640 84 LEKMEHLNQINL 95 (305)
Q Consensus 84 ~~~l~~L~~L~L 95 (305)
+.++.+|+.+.|
T Consensus 306 F~~c~~L~~i~l 317 (379)
T 4h09_A 306 FMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEC
T ss_pred hcCCCCCCEEEc
Confidence 334444444444
Done!