BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044643
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 271 MILDLLKSLWKSSTITIDQMKRGYERIYNE 300
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4
Length = 136
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 69 MILDLLKSLWKSSTITIDQMKRGYERIYNE 98
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 131
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 64 MILDLLKSLWKSSTITIDQMKRGYERIYNE 93
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 63 MILDLLKSLWKSSTITIDQMKRGYERIYNE 92
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4
Length = 129
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 61 MILDLLKSLWKSSTITIDQMKRGYERIYNE 90
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 3
Length = 150
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 63 MILDLLKSLWKSSTITIDQMKRGYERIYNE 92
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed
Cell Death 4
Length = 137
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 63 MILDLLKSLWKSSTITVDQMKRGYERIYNE 92
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 171 MSQDFIKMMWRRTNLLLDVLKRGYSFIFTD 200
M D +K +W+ + + +D +KRGY I+ +
Sbjct: 234 MILDLLKSLWKSSTITVDQMKRGYERIYNE 263
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
pdb|2IOL|B Chain B, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
Length = 150
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 174 DFIKMMWRRTNLLLDVLKRGYSFIFTD 200
D +K +W+ + + +D KRGY I+ +
Sbjct: 66 DLLKSLWKSSTITIDQXKRGYERIYNE 92
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 174 DFIKMMWRRTNLLLDVLKRGYSFIFTD 200
D +K +W+ + + +D KRGY I+ +
Sbjct: 223 DLLKSLWKSSTITVDQXKRGYERIYNE 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,833,747
Number of Sequences: 62578
Number of extensions: 422879
Number of successful extensions: 1021
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 10
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)