BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044643
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3E6Y3|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana
GN=At1g28695 PE=2 SV=1
Length = 329
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 237/350 (67%), Gaps = 37/350 (10%)
Query: 28 GNLFI-VSLLFAGVLYICIWSPSRSNPLLPYQKPQRICPHTRLKTIKLPIDELELALEEA 86
GNL + V+L FAG LYI YQ L+T + P+DELE AL A
Sbjct: 9 GNLVVAVALFFAGALYI-----------FNYQNYVNT-----LRTTQYPVDELEAALYTA 52
Query: 87 AMPN-KTVIIAVVNRAYVEQSIKADTTMLDLFLESFWLGEGTRPLLDNLLIVAVDQTAYD 145
A N KTVII +VN+AYV++ + +TMLDLFLESFW GEGT PLLD+L++VAVDQTAYD
Sbjct: 53 AAGNNKTVIITMVNKAYVKE-VGRGSTMLDLFLESFWEGEGTLPLLDHLMVVAVDQTAYD 111
Query: 146 RCLFKRLHCYRLLT-DGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYSFIFTDTDVM 204
RC FKRLHCY++ T DGVD EKV+MS+DFI+MMWRRT L+LDVL+RGY+ IFTDTDVM
Sbjct: 112 RCRFKRLHCYKMETEDGVDLEGEKVFMSKDFIEMMWRRTRLILDVLRRGYNVIFTDTDVM 171
Query: 205 WMRNPFMMLDKNESEDLQISVDEYNGDPRSQKNLINTGFYFIRSNNRTIDLFSKWYGMKD 264
W+R+P L N S D+QISVD N + LINTGFY +RSNN+TI LF KWY M+
Sbjct: 172 WLRSPLSRL--NMSLDMQISVDRINVGGQ----LINTGFYHVRSNNKTISLFQKWYDMRL 225
Query: 265 NSTGMKEQDVLLELMRKGIFKQLGMRVKFLDTQYFSGFCQDSKNIWSVTTVHSNCCRHID 324
NSTGMKEQDVL L+ G F QLG+ V FL T FSGFCQDS ++ VTTVH+NCC HI
Sbjct: 226 NSTGMKEQDVLKNLLDSGFFNQLGLNVGFLSTTEFSGFCQDSPHMGVVTTVHANCCLHIP 285
Query: 325 AKVSDLKFVLRDWKRFTALKAKYPTMGRNKTMTYRWSPHNACKNSWKQEH 374
AKV DL VLRDWKR+ A + +WSPH C SW H
Sbjct: 286 AKVFDLTRVLRDWKRYKA-----------SHVNSKWSPHLKCSRSWNDTH 324
>sp|P0C042|Y4597_ARATH Uncharacterized protein At4g15970 OS=Arabidopsis thaliana
GN=At4g15970 PE=2 SV=1
Length = 367
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 179/296 (60%), Gaps = 21/296 (7%)
Query: 76 IDELELALEEAAMPNKTVIIAVVNRAYVEQSIKADTTMLDLFLESFWLGEGTRPLLDNLL 135
+ +L L EAA +KTVII +N+A+ E + + DLFL SF +G+GT+PLL +L+
Sbjct: 39 LKKLGKILTEAATEDKTVIITTLNKAWSEPN-----STFDLFLHSFHVGKGTKPLLRHLV 93
Query: 136 IVAVDQTAYDRCLFKRLH-CYRLLTDGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGY 194
+ +D+ AY RC H CY + T G+DFA +K++M+ D++KMMWRR L +LK Y
Sbjct: 94 VACLDEEAYSRCSEVHPHRCYFMKTPGIDFAGDKMFMTPDYLKMMWRRIEFLGTLLKLRY 153
Query: 195 SFIFTDTDVMWMRNPFMMLDKNESEDLQISVDEYNGDPRSQKNLINTGFYFIRSNNRTID 254
+FIFT PF L K D QI+ D Y+GD + N +N GF F+++N RTID
Sbjct: 154 NFIFTI--------PFPRLSK--EVDFQIACDRYSGDDKDIHNAVNGGFAFVKANQRTID 203
Query: 255 LFSKWYGMKDNSTGMKEQDVLLELMRKGIFKQLGMRVKFLDTQYFSGFCQDSKNIWSVTT 314
++ WY + +QDVL ++ G ++G++++FLDT+YF GFC+ S+++ V T
Sbjct: 204 FYNYWYMSRLRYPDRHDQDVLDQIKGGGYPAKIGLKMRFLDTKYFGGFCEPSRDLDKVCT 263
Query: 315 VHSNCCRHIDAKVSDLKFVLRDWKRFTALKAKYPTMGRNKTMTYRWSPHNACKNSW 370
+H+NCC ++ K+ DL+ V+ DW+ + + A T G + MT+R P N K W
Sbjct: 264 MHANCCVGLENKIKDLRQVIVDWENYVS--AAKTTDG--QIMTWR-DPENCMKQWW 314
>sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase
OS=Dictyostelium discoideum GN=agtA PE=1 SV=1
Length = 648
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 185 LLLDVLKRGYSFIFTDTDVMWMRNPFMMLDKNESEDLQISVDEYNGDPRSQK--NLINTG 242
++LDVLK+GY+ ++TDTD++W R+PF+ ++ +++ Q + D+ + D Q+ + I G
Sbjct: 117 VVLDVLKKGYNVLWTDTDIVWKRDPFIHFYQDINQENQFTNDD-DIDLYVQQDDDDICAG 175
Query: 243 FYFIRSNNRTI---------------DLFSKWYGMKDNSTGMKEQDVLLELMRKGIFKQL 287
FYFIRSN RTI D + +K +K +++LL L K+
Sbjct: 176 FYFIRSNQRTIKFIQDSINFLNPCIDDQIAMRLFLKSQGINIKSKNILLSLSEND--KKD 233
Query: 288 GMRVKFLD-------TQYFSGFCQDSKNIWSVTTVHSNC 319
+R + LD T YF+ NI + +H+NC
Sbjct: 234 KIRYRLLDKKLFPNGTNYFNLKITQRDNI-TPFIIHNNC 271
>sp|C5BP08|CH60_TERTT 60 kDa chaperonin OS=Teredinibacter turnerae (strain ATCC 39867 /
T7901) GN=groL PE=3 SV=1
Length = 546
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 261 GMKDNSTGMKEQDVLLELMRKGIFKQLGMRVKFLDTQYFSGFCQDSKNIWSVTTVHSNCC 320
G+K + GM D +++GI K + V+F+ + C+DSK+I V T+ +N
Sbjct: 103 GLKSVAAGMNPMD-----LKRGIDKAVAAAVEFVKSSAQP--CEDSKSIAQVGTISANSD 155
Query: 321 RHI 323
HI
Sbjct: 156 SHI 158
>sp|Q6CWI2|IML1_KLULA Vacuolar membrane-associated protein IML1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=IML1 PE=3 SV=1
Length = 1558
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 277 ELMRKGIFKQLGMRVKFLDTQYF----SGFCQDSKNIWSVTTVHSNCCRHIDAKVS 328
ELM KG+F + R FLD YF F ++K ++ +T HSN H+ K+S
Sbjct: 1211 ELMNKGLFHHVESRHGFLDGHYFYQLNPEFTTENKTLYKTSTKHSNES-HLMRKIS 1265
>sp|A0Q1U9|THIC_CLONN Phosphomethylpyrimidine synthase OS=Clostridium novyi (strain NT)
GN=thiC PE=3 SV=1
Length = 437
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 24/120 (20%)
Query: 160 DGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYSFIFTDTDVMWMR-----NPF---- 210
DGVDF T ++++ ++ ++R L++++ RG S +F WM+ NPF
Sbjct: 155 DGVDFMTIHCGINRETAEV-FKRNPRLMNLVSRGGSLLFA-----WMQLNNKENPFYEHF 208
Query: 211 -MMLDKNESEDLQISVD--------EYNGDPRSQKNLINTGFYFIRSNNRTIDLFSKWYG 261
+LD E D+ IS+ E + DP K LI G R+ R + + + G
Sbjct: 209 DKVLDICEKYDVTISLGDACRPGCIEDSTDPSQIKELITLGELTKRAWERNVQIIIEGPG 268
>sp|Q8XMK9|THIC_CLOPE Phosphomethylpyrimidine synthase OS=Clostridium perfringens (strain
13 / Type A) GN=thiC PE=3 SV=1
Length = 436
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 160 DGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYSFIFTDTDVMWMRNPFM-----MLD 214
DGVDF T ++++ I+ +RR L +++ RG S +F ++ NPF +LD
Sbjct: 155 DGVDFVTIHAGLNRETIET-FRRNKRLTNIVSRGGSLLFAWMELNNRENPFYEYFDRLLD 213
Query: 215 KNESEDLQISVDE 227
E DL +S+ +
Sbjct: 214 ICEKYDLTLSLGD 226
>sp|Q0TTB7|THIC_CLOP1 Phosphomethylpyrimidine synthase OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=thiC PE=3 SV=1
Length = 436
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 160 DGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYSFIFTDTDVMWMRNPFM-----MLD 214
DGVDF T ++++ I+ +RR L +++ RG S +F ++ NPF +LD
Sbjct: 155 DGVDFVTIHAGLNRETIET-FRRNKRLTNIVSRGGSLLFAWMELNNRENPFYEYFDRLLD 213
Query: 215 KNESEDLQISVDE 227
E DL +S+ +
Sbjct: 214 ICEKYDLTLSLGD 226
>sp|Q0SV55|THIC_CLOPS Phosphomethylpyrimidine synthase OS=Clostridium perfringens (strain
SM101 / Type A) GN=thiC PE=3 SV=1
Length = 436
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 160 DGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYSFIFTDTDVMWMRNPFM-----MLD 214
DGVDF T ++++ I+ +RR L +++ RG S +F ++ NPF +LD
Sbjct: 155 DGVDFVTIHAGLNRETIET-FRRNKRLTNIVSRGGSLLFAWMELNNRENPFYEYFDRLLD 213
Query: 215 KNESEDLQISVDE 227
E DL +S+ +
Sbjct: 214 ICEKYDLTLSLGD 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,001,110
Number of Sequences: 539616
Number of extensions: 5561936
Number of successful extensions: 15929
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15913
Number of HSP's gapped (non-prelim): 9
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)