Query 044643
Match_columns 378
No_of_seqs 175 out of 363
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.9 0.00014 4.7E-09 71.2 13.1 162 93-281 6-173 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.4 0.00049 1.7E-08 65.3 9.6 161 93-281 6-174 (263)
3 3tzt_A Glycosyl transferase fa 97.3 0.0017 5.7E-08 61.6 11.8 157 175-343 83-270 (276)
4 1g9r_A Glycosyl transferase; a 97.1 0.0015 5.3E-08 62.6 9.0 179 94-297 3-206 (311)
5 3e61_A Putative transcriptiona 34.0 1.7E+02 0.0056 25.5 8.7 60 129-195 63-123 (277)
6 2c0n_A A197; thermophil protei 29.0 33 0.0011 31.0 2.9 91 142-248 16-125 (203)
7 3l9k_W Dynein intermediate cha 25.6 40 0.0014 22.4 2.1 29 169-197 9-37 (38)
8 3p0b_A TT1467 protein; glycosi 23.1 36 0.0012 35.1 2.4 30 183-212 226-255 (540)
9 1pfi_A Major coat protein of P 21.6 54 0.0018 22.2 2.2 13 33-45 31-43 (46)
10 2p6w_A VP54, putative glycosyl 20.7 1.2E+02 0.004 27.4 4.8 122 144-278 30-160 (213)
11 1fo8_A Alpha-1,3-mannosyl-glyc 20.5 5.6E+02 0.019 24.4 11.2 110 92-214 5-121 (343)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.86 E-value=0.00014 Score=71.19 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=89.6
Q ss_pred EEEEEecchhhcccccchhhhHHHHHHHhHhhcCCCCCCCcEEEEEeC---hHHHHHHHhcCCcEEEeecCCCCCccccc
Q 044643 93 VIIAVVNRAYVEQSIKADTTMLDLFLESFWLGEGTRPLLDNLLIVAVD---QTAYDRCLFKRLHCYRLLTDGVDFATEKV 169 (378)
Q Consensus 93 VIvt~~N~a~~~~g~~~~~smldlFLesf~~~~~~~~l~~n~lVvAlD---~~t~~~c~~~g~~c~~~~~~~~d~s~~~~ 169 (378)
-|+.++|.+|... .+- .+.|.... .+ -..++|+..| ++..+.+++.+......+.-.........
T Consensus 6 ~vt~~~d~~Yl~~-------a~v-l~~SL~~~-~s---~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~ 73 (333)
T 1ll2_A 6 FVTLTTNDAYAKG-------ALV-LGSSLKQH-RT---SRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLT 73 (333)
T ss_dssp EEEEESSHHHHHH-------HHH-HHHHHHHT-TC---CSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHH
T ss_pred EEEEEeCHHHHHH-------HHH-HHHHHHHh-CC---CCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcc
Confidence 3444578999862 222 24554431 11 2445555553 56667777777655444321111110000
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHcCC-cEEEeeceEEeccCcccccccCCCCCeEEecccCCCCCCCCCCccCeEEEEEEe
Q 044643 170 YMSQDFIKMMWRRTNLLLDVLKRGY-SFIFTDTDVMWMRNPFMMLDKNESEDLQISVDEYNGDPRSQKNLINTGFYFIRS 248 (378)
Q Consensus 170 ygS~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~p~l~~~~~aDi~vssD~~~~~~~~~~~~~NtGf~yvR~ 248 (378)
...+.....++.|+.+.. + ..| .||+.|+|++.++|+-+.+.. + .+....|. + .+..+|+|+|.+++
T Consensus 74 ~~~~~~~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~-~--~~aAv~d~----~--~~~~fNsGvmlin~ 141 (333)
T 1ll2_A 74 LMKRPELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFER-E--ELSAAPDP----G--WPDCFNSGVFVYQP 141 (333)
T ss_dssp HHHCGGGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGS-C--SSEEEECS----S--STTSEEEEEEEECC
T ss_pred cccccchHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCC-C--ceeEEecC----C--CCcceeeeEEEEeC
Confidence 000011235667776554 2 344 499999999999999888742 2 34433442 1 23579999999999
Q ss_pred CHHHHHHHHHHHhhhhcC--CCCCchHHHHHHHHc
Q 044643 249 NNRTIDLFSKWYGMKDNS--TGMKEQDVLLELMRK 281 (378)
Q Consensus 249 T~~ti~f~~~W~~~~~~~--~~~~DQ~vfN~ll~~ 281 (378)
+..+ ++.+.+.+.+. -...||++||.++.+
T Consensus 142 ~~~~---~~~l~~~~~~~~~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 142 SVET---YNQLLHVASEQGSFDGGDQGLLNTFFNS 173 (333)
T ss_dssp CHHH---HHHHHHHHHHTCCTTSSHHHHHHHHTTT
T ss_pred CHHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHh
Confidence 8544 33443333221 134799999998753
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.43 E-value=0.00049 Score=65.27 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=88.9
Q ss_pred EEEE-EecchhhcccccchhhhHHHHHHHhHhhcCCCCCCCcEEEEE---eChHHHHHHHhcCCcEEEeecCCCCCccc-
Q 044643 93 VIIA-VVNRAYVEQSIKADTTMLDLFLESFWLGEGTRPLLDNLLIVA---VDQTAYDRCLFKRLHCYRLLTDGVDFATE- 167 (378)
Q Consensus 93 VIvt-~~N~a~~~~g~~~~~smldlFLesf~~~~~~~~l~~n~lVvA---lD~~t~~~c~~~g~~c~~~~~~~~d~s~~- 167 (378)
..+| .+|.+|.. +.+-+ +.|++.. .+ ...++|+. ++++..+.+++.+......+. .+....
T Consensus 6 AyvTl~td~~Yl~-------ga~vL-~~SL~~~-~s---~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~--l~~~~~~ 71 (263)
T 3u2u_A 6 AFVTLTTNDAYAK-------GALVL-GSSLKQH-RT---TRRLVVLATPQVSDSMRKVLETVFDEVIMVDV--LDSGDSA 71 (263)
T ss_dssp EEEEEESSHHHHH-------HHHHH-HHHHHHT-TC---CSEEEEEECTTSCHHHHHHHHHHSSEEEECCC--CCCCCHH
T ss_pred EEEEEEECHHHHH-------HHHHH-HHHHHHh-CC---CCCEEEEecCCCCHHHHHHHHHcCCeEEEeee--cCCcchh
Confidence 3444 46888886 23333 5665532 22 12344443 345677788887766554432 111000
Q ss_pred --cccCCHHHHHHHHHHHHHHHHHHHcCC-cEEEeeceEEeccCcccccccCCCCCeEEecccCCCCCCCCCCccCeEEE
Q 044643 168 --KVYMSQDFIKMMWRRTNLLLDVLKRGY-SFIFTDTDVMWMRNPFMMLDKNESEDLQISVDEYNGDPRSQKNLINTGFY 244 (378)
Q Consensus 168 --~~ygS~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~p~l~~~~~aDi~vssD~~~~~~~~~~~~~NtGf~ 244 (378)
.....+.+ ..+|.|..+-. ++ .| .||+.|+|++.++|.-+.+.. + .+....|.. .+..+|+|+|
T Consensus 72 ~~~~~~rp~~-~~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~-~--~~aA~~d~~------~~~~fNsGv~ 138 (263)
T 3u2u_A 72 HLTLMKRPEL-GVTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDR-E--ELSAAPDPG------WPDCFNSGVF 138 (263)
T ss_dssp HHHHTTCTTG-GGGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGS-C--SSEEEECTT------STTSEEEEEE
T ss_pred hhhhhcCcch-hHHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCC-C--cceEeccCC------CCccccCeEE
Confidence 00111111 23455655443 22 46 499999999999999888742 2 344445531 2357899999
Q ss_pred EEEeCHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHc
Q 044643 245 FIRSNNRTIDLFSKWYGMKDNSTGMKEQDVLLELMRK 281 (378)
Q Consensus 245 yvR~T~~ti~f~~~W~~~~~~~~~~~DQ~vfN~ll~~ 281 (378)
.+.++..+-+-+-+...... .....||++||.++..
T Consensus 139 li~p~~~~~~~l~~~~~~~~-~~~~~DQd~LN~~f~~ 174 (263)
T 3u2u_A 139 VYQPSVETYNQLLHLASEQG-SFDGGDQGILNTFFSS 174 (263)
T ss_dssp EECCCHHHHHHHHHHHHHHC-CTTSSHHHHHHHHTTT
T ss_pred EEcccHHHHHHHHHHHHhcC-CCCcccHHHHHHHhcc
Confidence 99998644333333322221 1235799999999853
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=97.31 E-value=0.0017 Score=61.63 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHcCC-cEEEeeceEEeccCccccccc-CCCCCeEEecccCCCCC--------C-CCCCccCeEE
Q 044643 175 FIKMMWRRTNLLLDVLKRGY-SFIFTDTDVMWMRNPFMMLDK-NESEDLQISVDEYNGDP--------R-SQKNLINTGF 243 (378)
Q Consensus 175 f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~p~l~~-~~~aDi~vssD~~~~~~--------~-~~~~~~NtGf 243 (378)
|...+..|.. +-+++...+ .||+.|+|++.++|.-+.+.. ..+.-+.+..|+..... . ......|+|+
T Consensus 83 ~s~~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV 161 (276)
T 3tzt_A 83 YPKEMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGL 161 (276)
T ss_dssp -CHHHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEE
T ss_pred cCHHHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeE
Confidence 3344555554 444554445 599999999999999888742 22344555566532210 0 1136899999
Q ss_pred EEEEeCHH-HHHHHHHHHhhhhcCC---CCCchHHHHHHHHcCCcCCCCcEEEEccc--CccC-Cccc----c---CCC-
Q 044643 244 YFIRSNNR-TIDLFSKWYGMKDNST---GMKEQDVLLELMRKGIFKQLGMRVKFLDT--QYFS-GFCQ----D---SKN- 308 (378)
Q Consensus 244 ~yvR~T~~-ti~f~~~W~~~~~~~~---~~~DQ~vfN~ll~~~~~~~~gl~v~~Ld~--~~F~-GF~q----~---~~d- 308 (378)
|.+..+.- -..+.+.+.+.+.+.. ...||++||.++.. ++..||. ..+. |+.. . ..+
T Consensus 162 ~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~--------~~~~Lp~~~wN~~~~~~~~~~~~~~~~~~~ 233 (276)
T 3tzt_A 162 LLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILNAMYGD--------RIYPLDDLIYNYDARNYSSYLIRSKKQADL 233 (276)
T ss_dssp EEEEHHHHHHHCCHHHHHHHHHHC--------CHHHHHHHGG--------GEEEEEHHHHSEETTCHHHHHHHTTTCCSH
T ss_pred EEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHHHHHhC--------CEEECCchheeeecccchhhhccccchhhh
Confidence 99987641 1122222222222222 25799999998853 5788885 3333 4321 1 111
Q ss_pred ---CCceEEEEccccc--CccchHHHHHHHHHHHHhcccc
Q 044643 309 ---IWSVTTVHSNCCR--HIDAKVSDLKFVLRDWKRFTAL 343 (378)
Q Consensus 309 ---~~~~~~VHaN~~~--G~~~K~~rLr~vl~dw~~y~~~ 343 (378)
...|.++|-+-.. -...-.++++++ |++|...
T Consensus 234 ~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~---w~~Y~~~ 270 (276)
T 3tzt_A 234 AWLMDHTVVLHFCGRDKPWKKNHRNKFTSL---YKHYMSL 270 (276)
T ss_dssp HHHHHHCCEEECCSSCCTTSTTCCSTTHHH---HHHHHHH
T ss_pred hhhccCCeEEEECCCCCCcCCCCCCchHHH---HHHHHHH
Confidence 2368899976431 112223466665 6666543
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=97.07 E-value=0.0015 Score=62.64 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=94.0
Q ss_pred EEEEecchhhcccccchhhhHHHHHHHhHhhcCCCCCCCcEEEEEeC--hHHHHHHHhc----CCcEEEeecCCCCC---
Q 044643 94 IIAVVNRAYVEQSIKADTTMLDLFLESFWLGEGTRPLLDNLLIVAVD--QTAYDRCLFK----RLHCYRLLTDGVDF--- 164 (378)
Q Consensus 94 Ivt~~N~a~~~~g~~~~~smldlFLesf~~~~~~~~l~~n~lVvAlD--~~t~~~c~~~----g~~c~~~~~~~~d~--- 164 (378)
|+.++|.+|... +. ..+.|.+..+.. .--++.|++.| ++..+.+++. +........+...+
T Consensus 3 I~~~~d~~Y~~~-------~~-vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~ 72 (311)
T 1g9r_A 3 IVFAADDNYAAY-------LC-VAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGF 72 (311)
T ss_dssp EEEEECGGGHHH-------HH-HHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTS
T ss_pred EEEECCHhHHHH-------HH-HHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcC
Confidence 556689999863 22 235565121211 12245556544 6666666654 43333222211111
Q ss_pred cc-ccccCCHHHHHHHHHHHHHHHHHHHcCC-cEEEeeceEEeccCccccccc-CCCCCeEEecccCCC-C-------CC
Q 044643 165 AT-EKVYMSQDFIKMMWRRTNLLLDVLKRGY-SFIFTDTDVMWMRNPFMMLDK-NESEDLQISVDEYNG-D-------PR 233 (378)
Q Consensus 165 s~-~~~ygS~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~p~l~~-~~~aDi~vssD~~~~-~-------~~ 233 (378)
.. ...+ | ..+..|.. +-.+|. .+ .||+.|+|++.++|.-+.+.. .++.-+.+..|.+.. . +.
T Consensus 73 ~~~~~~~-s----~~~y~Rl~-l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~ 145 (311)
T 1g9r_A 73 PLNIRHI-S----ITTYARLK-LGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGM 145 (311)
T ss_dssp CCCCTTC-C----GGGGGGGG-HHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTC
T ss_pred ccccccC-C----HHHHHHHH-HHHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCC
Confidence 11 1111 1 12333544 344553 44 499999999999998888742 234455555564321 0 11
Q ss_pred -CCCCccCeEEEEEEeCH----HHHHHHHHHHhhhhcCCCCCchHHHHHHHHcCCcCCCCcEEEEcccC
Q 044643 234 -SQKNLINTGFYFIRSNN----RTIDLFSKWYGMKDNSTGMKEQDVLLELMRKGIFKQLGMRVKFLDTQ 297 (378)
Q Consensus 234 -~~~~~~NtGf~yvR~T~----~ti~f~~~W~~~~~~~~~~~DQ~vfN~ll~~~~~~~~gl~v~~Ld~~ 297 (378)
......|+|+|.+.++. ...+-+.+|.......-...||+++|.++.. ++..||..
T Consensus 146 ~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~--------~~~~Lp~~ 206 (311)
T 1g9r_A 146 ADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG--------GVCYANSR 206 (311)
T ss_dssp CTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTT--------SEEEECGG
T ss_pred CCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcC--------CEEEcChh
Confidence 12457999999998763 2223333454433222235799999988753 36667643
No 5
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.05 E-value=1.7e+02 Score=25.55 Aligned_cols=60 Identities=8% Similarity=-0.104 Sum_probs=37.1
Q ss_pred CCCCcEEEEEeChHHHH-HHHhcCCcEEEeecCCCCCccccccCCHHHHHHHHHHHHHHHHHHHcCCc
Q 044643 129 PLLDNLLIVAVDQTAYD-RCLFKRLHCYRLLTDGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYS 195 (378)
Q Consensus 129 ~l~~n~lVvAlD~~t~~-~c~~~g~~c~~~~~~~~d~s~~~~ygS~~f~~m~w~K~~~l~~vL~lGy~ 195 (378)
..++-+++...+++..+ .+.+.|+|++.+.....+ .. +...+....+ -.....++++|+.
T Consensus 63 ~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~~~~~---~~-~V~~D~~~~g---~~a~~~L~~~G~~ 123 (277)
T 3e61_A 63 HNCTGMISTAFNENIIENTLTDHHIPFVFIDRINNE---HN-GISTNHFKGG---QLQAEVVRKGKGK 123 (277)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC-------------HHHHH---HHHHHHHHHTTCC
T ss_pred CCCCEEEEecCChHHHHHHHHcCCCCEEEEeccCCC---CC-eEEechHHHH---HHHHHHHHHCCCC
Confidence 35788888888888888 999999999987543211 11 5555555555 2356677788985
No 6
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=28.99 E-value=33 Score=30.98 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCcEEEeecCCCCCccccccCCHHHHHHHHHHHHHHHHHHH-cCCc-EEEeeceEEecc-Cc--ccccccC
Q 044643 142 TAYDRCLFKRLHCYRLLTDGVDFATEKVYMSQDFIKMMWRRTNLLLDVLK-RGYS-FIFTDTDVMWMR-NP--FMMLDKN 216 (378)
Q Consensus 142 ~t~~~c~~~g~~c~~~~~~~~d~s~~~~ygS~~f~~m~w~K~~~l~~vL~-lGy~-VLfsDvDVVWlR-nP--~p~l~~~ 216 (378)
.....|.+.|++.+.... . | -+...|..++...|+ .||+ ++|.|+|||=+. || .+.+ ..
T Consensus 16 ~l~~~l~~~gi~~~l~~~-~----------S----lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rL-l~ 79 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR-R----------N----HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAK-FN 79 (203)
T ss_dssp HHHHHHHHTTCCEEEECC-C----------S----CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHH-HH
T ss_pred HHHHHHHhCCCeEEEEcc-c----------c----chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHH-Hh
Confidence 345677788888876542 1 0 144568899999887 6887 889999955433 33 2222 14
Q ss_pred CCCCeEEecccCCC-------------C-CCCCCCccCeEEEEEEe
Q 044643 217 ESEDLQISVDEYNG-------------D-PRSQKNLINTGFYFIRS 248 (378)
Q Consensus 217 ~~aDi~vssD~~~~-------------~-~~~~~~~~NtGf~yvR~ 248 (378)
.++|+++.+=.-.+ + ....-...-|||+.+|-
T Consensus 80 ~g~DVV~GsYp~K~~~~~s~~a~~y~~~i~~~~V~d~~tGF~lIkR 125 (203)
T 2c0n_A 80 EGYDVVCGYYYLKTLRGYSVYRKDWEKEIFDGEVNGCGLGFTFIKR 125 (203)
T ss_dssp HTCSEEEEECBCTTSSSBSEESSSBCSSCCCEECSEECSSEEEEEH
T ss_pred CCCCEEEEEeeccCCCccchHHHHHHHhccCceeeeccccEEEEhH
Confidence 57899886531111 0 00123456689999885
No 7
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=25.59 E-value=40 Score=22.36 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=25.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCcEE
Q 044643 169 VYMSQDFIKMMWRRTNLLLDVLKRGYSFI 197 (378)
Q Consensus 169 ~ygS~~f~~m~w~K~~~l~~vL~lGy~VL 197 (378)
...|.+|....-+..+++.+.|.-.||++
T Consensus 9 I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 9 IILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 35689999999999999999999999865
No 8
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=23.06 E-value=36 Score=35.13 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCcEEEeeceEEeccCcccc
Q 044643 183 TNLLLDVLKRGYSFIFTDTDVMWMRNPFMM 212 (378)
Q Consensus 183 ~~~l~~vL~lGy~VLfsDvDVVWlRnP~p~ 212 (378)
..+...+-+.|+..+|+|...+-...|.|.
T Consensus 226 ~~l~~~L~~~Gi~y~~vd~~~~~~~~~~p~ 255 (540)
T 3p0b_A 226 PGVDELLMRAGIRYTFVDAHLVQGGEPLSP 255 (540)
T ss_dssp CCHHHHHHHTTCCEEEECTHHHHCSSCCCC
T ss_pred hhHHHHHHHcCCeEEEECchhhccCCCCCC
Confidence 367788889999999999998887766663
No 9
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=21.57 E-value=54 Score=22.19 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.4
Q ss_pred HHHHHhhHHhhhh
Q 044643 33 VSLLFAGVLYICI 45 (378)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (378)
+.|++||++|..+
T Consensus 31 vil~VAGLiysm~ 43 (46)
T 1pfi_A 31 VILAVAGLIYSML 43 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5688899998764
No 10
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=20.74 E-value=1.2e+02 Score=27.41 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=63.8
Q ss_pred HHHHHhcCCcEEEeecCCCCCccccccCCHHHHHHHHHHHHHHHHHHHcCCc---EEEeeceEEec-cCcccccccC---
Q 044643 144 YDRCLFKRLHCYRLLTDGVDFATEKVYMSQDFIKMMWRRTNLLLDVLKRGYS---FIFTDTDVMWM-RNPFMMLDKN--- 216 (378)
Q Consensus 144 ~~~c~~~g~~c~~~~~~~~d~s~~~~ygS~~f~~m~w~K~~~l~~vL~lGy~---VLfsDvDVVWl-RnP~p~l~~~--- 216 (378)
.++|+..|..-|+.... ... +++ ...-|+|.=++++....=-+ +.+.|.|++.. .||-.-+..+
T Consensus 30 ~DYArrHGYelfy~d~~---l~k-----~~e-~a~eW~ksW~IR~AM~khPeAEWfWWLDsDAlIMDmnf~lPLe~yldl 100 (213)
T 2p6w_A 30 EEYCSIHGYNFYYEESE---PLE-----TEE-HALHFRRSWIIQQAAEKFPSTEWFLWLDSDVYVNPKNKNKPITSFIDL 100 (213)
T ss_dssp HHHHHHHTCEEEEECSC---CSC-----CSH-HHHHHTHHHHHHHHHHHCTTCSEEEEECTTEEECGGGTTSCGGGTCCC
T ss_pred HHHHHHcCCeEEEeecc---ccc-----chh-hcccchhhHHHHHHHHHCCCceEEEEecCCceeecCCCCCcHHHcccc
Confidence 48899999887764321 111 111 22345555577777776433 88999999876 2332222223
Q ss_pred CCCCeEEecccCCCCCCCCCCccCeEEEEEEeCHHHHHHHHHHH-hhhhc-CCCCCchHHHHHH
Q 044643 217 ESEDLQISVDEYNGDPRSQKNLINTGFYFIRSNNRTIDLFSKWY-GMKDN-STGMKEQDVLLEL 278 (378)
Q Consensus 217 ~~aDi~vssD~~~~~~~~~~~~~NtGf~yvR~T~~ti~f~~~W~-~~~~~-~~~~~DQ~vfN~l 278 (378)
.+.-+++- +|...++. ...+|+|.+++..++--++=.+ |- +.++. .+-..+|....+-
T Consensus 101 ~~~NlvvH--Gw~e~~~~-~~~lNtGvfL~~~~~~~irncq-WSld~~~~w~~~~~~~~~~~~~ 160 (213)
T 2p6w_A 101 SDPNILYH--TFHEAPWG-SYPINTGVKFVHKDALEIEKIV-WSLRNEAPWNTFPYEQKTVYEY 160 (213)
T ss_dssp CCTTCCEE--EECCTTTS-SSSCCTTEEEEEGGGHHHHHHH-HHTTTSTTTTSTTTHHHHHHHT
T ss_pred ccCceeec--cccccccc-cccccceeeeecccchhhhhce-eehhhhhcccCCCcccceeeee
Confidence 33333321 11111222 2478999999777665544433 32 22221 1224578766553
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=20.48 E-value=5.6e+02 Score=24.36 Aligned_cols=110 Identities=9% Similarity=0.018 Sum_probs=62.7
Q ss_pred eEEEEEecchhhcccccchhhhHHHHHHHhHhhcCCCCCCCcEEEEEeCh---HHHHHHHhcCCcEEEeecCCCC--Ccc
Q 044643 92 TVIIAVVNRAYVEQSIKADTTMLDLFLESFWLGEGTRPLLDNLLIVAVDQ---TAYDRCLFKRLHCYRLLTDGVD--FAT 166 (378)
Q Consensus 92 tVIvt~~N~a~~~~g~~~~~smldlFLesf~~~~~~~~l~~n~lVvAlD~---~t~~~c~~~g~~c~~~~~~~~d--~s~ 166 (378)
.|||++.|..- |..-|++.... +.......+||+-|. ++.+.++..+.+.-........ ...
T Consensus 5 pViI~~yNRp~-----------l~~~L~sL~~~--~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~ 71 (343)
T 1fo8_A 5 PILVIACDRST-----------VRRCLDKLLHY--RPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQ 71 (343)
T ss_dssp CEEEEESSCTT-----------HHHHHHHHHHH--CSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCC
T ss_pred cEEEEECCcHH-----------HHHHHHHHHhc--CCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccc
Confidence 58888888862 33345554421 122234567777765 4555555544332222111111 112
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHH--cCCcEEEeeceEEeccCcccccc
Q 044643 167 EKVYMSQDFIKMMWRRTNLLLDVLK--RGYSFIFTDTDVMWMRNPFMMLD 214 (378)
Q Consensus 167 ~~~ygS~~f~~m~w~K~~~l~~vL~--lGy~VLfsDvDVVWlRnP~p~l~ 214 (378)
+...|.++|.++-..-...+..+.+ .+=.|++.|-|.+.-.|=+.++.
T Consensus 72 ~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 72 PDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred hhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 3334556676665555556666666 55669999999999888888874
Done!