Query 044644
Match_columns 183
No_of_seqs 129 out of 1771
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.4E-28 5.1E-33 162.5 17.6 146 2-148 11-156 (160)
2 KOG0027 Calmodulin and related 99.9 1.9E-25 4.1E-30 151.0 17.1 144 5-148 2-149 (151)
3 PTZ00184 calmodulin; Provision 99.9 5.7E-24 1.2E-28 143.5 18.1 148 1-148 1-148 (149)
4 PTZ00183 centrin; Provisional 99.9 4.2E-23 9.2E-28 140.7 18.1 146 3-148 9-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 6E-22 1.3E-26 129.3 15.8 146 3-148 25-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 1.5E-20 3.2E-25 122.0 16.0 140 4-147 25-164 (171)
7 KOG0034 Ca2+/calmodulin-depend 99.8 1.3E-19 2.7E-24 124.8 14.7 143 4-150 26-177 (187)
8 KOG0037 Ca2+-binding protein, 99.8 2.3E-18 5E-23 118.4 16.7 135 10-151 56-191 (221)
9 KOG0030 Myosin essential light 99.8 1.2E-18 2.6E-23 111.3 13.3 144 4-148 4-151 (152)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.1E-17 2.3E-22 115.4 15.4 147 3-152 21-179 (193)
11 KOG0036 Predicted mitochondria 99.8 1.6E-17 3.4E-22 123.7 16.0 142 4-151 7-149 (463)
12 KOG4223 Reticulocalbin, calume 99.5 6E-14 1.3E-18 102.0 9.7 136 9-144 161-301 (325)
13 KOG4223 Reticulocalbin, calume 99.5 9E-14 2E-18 101.1 8.9 147 5-151 70-231 (325)
14 PLN02964 phosphatidylserine de 99.5 2.2E-12 4.7E-17 103.8 14.2 105 3-112 135-243 (644)
15 KOG0037 Ca2+-binding protein, 99.4 4.8E-12 1E-16 87.5 9.9 86 10-102 123-208 (221)
16 cd05022 S-100A13 S-100A13: S-1 99.4 3.7E-12 8E-17 77.8 8.3 68 84-151 8-78 (89)
17 PF13499 EF-hand_7: EF-hand do 99.4 2.6E-12 5.7E-17 74.6 7.4 62 85-146 1-66 (66)
18 KOG0027 Calmodulin and related 99.4 1.8E-11 3.9E-16 82.7 11.9 108 46-154 7-119 (151)
19 PTZ00183 centrin; Provisional 99.3 1.3E-10 2.7E-15 79.0 13.9 102 47-149 17-119 (158)
20 cd05027 S-100B S-100B: S-100B 99.3 3.3E-11 7.1E-16 73.6 9.3 69 84-152 8-83 (88)
21 PF13499 EF-hand_7: EF-hand do 99.3 1.8E-11 3.9E-16 71.0 7.7 62 12-73 1-66 (66)
22 KOG0038 Ca2+-binding kinase in 99.3 8.7E-11 1.9E-15 76.2 10.7 143 4-150 21-179 (189)
23 cd05022 S-100A13 S-100A13: S-1 99.3 3.3E-11 7.1E-16 73.6 8.2 69 8-76 5-76 (89)
24 KOG0044 Ca2+ sensor (EF-Hand s 99.2 7.5E-10 1.6E-14 76.7 13.9 126 26-153 7-133 (193)
25 smart00027 EH Eps15 homology d 99.2 1.9E-10 4E-15 71.8 9.6 71 4-76 3-73 (96)
26 cd05029 S-100A6 S-100A6: S-100 99.2 1.3E-10 2.8E-15 71.0 8.4 68 84-151 10-82 (88)
27 PTZ00184 calmodulin; Provision 99.2 6.3E-10 1.4E-14 74.7 12.5 101 48-149 12-113 (149)
28 cd05027 S-100B S-100B: S-100B 99.2 2.2E-10 4.7E-15 70.0 9.0 69 8-76 5-80 (88)
29 COG5126 FRQ1 Ca2+-binding prot 99.2 1.1E-09 2.3E-14 73.5 12.8 105 48-154 21-126 (160)
30 KOG0377 Protein serine/threoni 99.2 6.3E-10 1.4E-14 84.5 12.6 138 11-150 464-617 (631)
31 PF13833 EF-hand_8: EF-hand do 99.2 1.6E-10 3.6E-15 64.2 7.0 52 97-148 1-53 (54)
32 cd05031 S-100A10_like S-100A10 99.2 4.3E-10 9.3E-15 69.8 9.4 70 84-153 8-84 (94)
33 cd05026 S-100Z S-100Z: S-100Z 99.2 3.1E-10 6.8E-15 70.2 8.5 68 84-151 10-84 (93)
34 cd05025 S-100A1 S-100A1: S-100 99.2 7.1E-10 1.5E-14 68.6 9.7 71 83-153 8-85 (92)
35 KOG2562 Protein phosphatase 2 99.1 7.1E-10 1.5E-14 84.6 11.1 136 5-144 272-420 (493)
36 cd05029 S-100A6 S-100A6: S-100 99.1 8.9E-10 1.9E-14 67.3 9.0 70 7-76 6-80 (88)
37 cd00052 EH Eps15 homology doma 99.1 6.4E-10 1.4E-14 64.5 7.9 62 87-150 2-63 (67)
38 smart00027 EH Eps15 homology d 99.1 9.8E-10 2.1E-14 68.5 8.9 70 82-153 8-77 (96)
39 cd00213 S-100 S-100: S-100 dom 99.1 1.1E-09 2.3E-14 67.3 8.1 70 7-76 4-80 (88)
40 cd00213 S-100 S-100: S-100 dom 99.1 1.7E-09 3.6E-14 66.4 8.9 68 83-150 7-81 (88)
41 cd05026 S-100Z S-100Z: S-100Z 99.1 2.3E-09 4.9E-14 66.4 8.9 69 8-76 7-82 (93)
42 cd05025 S-100A1 S-100A1: S-100 99.1 2.4E-09 5.2E-14 66.2 9.1 68 9-76 7-81 (92)
43 cd05023 S-100A11 S-100A11: S-1 99.1 3.4E-09 7.3E-14 64.9 9.3 68 84-151 9-83 (89)
44 KOG0028 Ca2+-binding protein ( 99.0 8.8E-09 1.9E-13 68.0 11.5 104 47-151 33-137 (172)
45 cd05031 S-100A10_like S-100A10 99.0 2.6E-09 5.7E-14 66.3 8.7 67 9-75 6-79 (94)
46 KOG0034 Ca2+/calmodulin-depend 99.0 3E-09 6.4E-14 73.7 9.8 101 13-113 68-176 (187)
47 KOG0040 Ca2+-binding actin-bun 99.0 8.8E-09 1.9E-13 87.9 14.2 137 3-147 2245-2397(2399)
48 cd00051 EFh EF-hand, calcium b 99.0 2.7E-09 5.8E-14 60.5 7.8 61 86-146 2-62 (63)
49 PF13833 EF-hand_8: EF-hand do 99.0 2.1E-09 4.6E-14 59.6 7.0 52 24-75 1-53 (54)
50 PLN02964 phosphatidylserine de 99.0 7.2E-09 1.6E-13 83.9 12.4 100 46-149 142-244 (644)
51 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.3E-09 5E-14 68.6 7.7 62 82-147 46-107 (116)
52 cd00052 EH Eps15 homology doma 99.0 2.5E-09 5.5E-14 62.0 7.2 61 14-76 2-62 (67)
53 PF14658 EF-hand_9: EF-hand do 98.9 7E-09 1.5E-13 58.8 6.9 61 88-148 2-64 (66)
54 cd00051 EFh EF-hand, calcium b 98.9 7.1E-09 1.5E-13 58.7 7.2 61 13-73 2-62 (63)
55 cd05023 S-100A11 S-100A11: S-1 98.9 1.8E-08 3.9E-13 61.7 9.0 70 7-76 5-81 (89)
56 cd05030 calgranulins Calgranul 98.9 2.1E-08 4.5E-13 61.4 7.5 66 84-149 8-80 (88)
57 KOG2643 Ca2+ binding protein, 98.9 4.3E-08 9.4E-13 74.5 10.5 134 13-152 320-457 (489)
58 KOG0036 Predicted mitochondria 98.8 7.3E-08 1.6E-12 72.9 11.5 102 46-152 13-114 (463)
59 cd00252 SPARC_EC SPARC_EC; ext 98.8 6E-08 1.3E-12 62.2 7.9 60 46-110 47-106 (116)
60 KOG0041 Predicted Ca2+-binding 98.8 1.1E-07 2.4E-12 65.2 9.4 73 4-76 92-164 (244)
61 KOG2643 Ca2+ binding protein, 98.8 4.5E-07 9.6E-12 69.2 13.2 158 13-178 235-412 (489)
62 cd05030 calgranulins Calgranul 98.8 8E-08 1.7E-12 58.8 7.6 69 8-76 5-80 (88)
63 KOG4251 Calcium binding protei 98.7 3.2E-08 6.9E-13 70.0 6.0 148 11-158 101-319 (362)
64 PF14658 EF-hand_9: EF-hand do 98.7 1.5E-07 3.3E-12 53.4 6.8 61 15-75 2-64 (66)
65 KOG0041 Predicted Ca2+-binding 98.7 1.7E-07 3.7E-12 64.3 8.2 66 84-149 99-164 (244)
66 cd05024 S-100A10 S-100A10: A s 98.7 4.6E-07 1E-11 55.1 8.7 67 84-151 8-79 (91)
67 PF12763 EF-hand_4: Cytoskelet 98.6 2E-07 4.2E-12 58.6 7.1 69 4-75 3-71 (104)
68 PF12763 EF-hand_4: Cytoskelet 98.4 2E-06 4.4E-11 54.0 7.9 67 81-150 7-73 (104)
69 cd05024 S-100A10 S-100A10: A s 98.4 4.3E-06 9.4E-11 50.9 8.9 68 8-76 5-77 (91)
70 PF00036 EF-hand_1: EF hand; 98.4 6.1E-07 1.3E-11 42.7 3.7 23 88-110 4-26 (29)
71 KOG0751 Mitochondrial aspartat 98.4 2.1E-05 4.5E-10 61.3 13.8 139 7-151 32-178 (694)
72 KOG0030 Myosin essential light 98.4 2.4E-06 5.2E-11 55.4 7.5 73 80-152 7-81 (152)
73 PF00036 EF-hand_1: EF hand; 98.4 6.5E-07 1.4E-11 42.7 3.7 28 121-148 1-28 (29)
74 KOG4666 Predicted phosphate ac 98.4 8.7E-07 1.9E-11 65.2 5.7 110 47-157 259-368 (412)
75 KOG1029 Endocytic adaptor prot 98.3 2.1E-05 4.6E-10 64.2 13.1 142 4-150 9-259 (1118)
76 KOG0169 Phosphoinositide-speci 98.3 1.8E-05 3.9E-10 64.5 12.5 140 6-150 131-276 (746)
77 KOG2562 Protein phosphatase 2 98.3 1.6E-05 3.4E-10 61.4 11.1 137 12-152 226-383 (493)
78 KOG0031 Myosin regulatory ligh 98.3 5.9E-06 1.3E-10 54.5 7.6 86 25-111 78-164 (171)
79 PF14788 EF-hand_10: EF hand; 98.3 6.4E-06 1.4E-10 44.1 5.9 50 27-76 1-50 (51)
80 KOG0038 Ca2+-binding kinase in 98.2 7.9E-06 1.7E-10 53.5 7.3 100 14-113 74-178 (189)
81 PF13405 EF-hand_6: EF-hand do 98.2 3.2E-06 6.9E-11 41.0 4.0 30 12-41 1-31 (31)
82 PF13405 EF-hand_6: EF-hand do 98.2 2.7E-06 5.8E-11 41.3 3.8 29 86-114 2-31 (31)
83 PRK12309 transaldolase/EF-hand 98.1 2.3E-05 5E-10 60.6 8.2 55 82-149 332-386 (391)
84 KOG4251 Calcium binding protei 98.1 2.5E-05 5.5E-10 55.6 7.6 97 49-145 238-342 (362)
85 KOG0046 Ca2+-binding actin-bun 98.0 4.2E-05 9E-10 60.0 8.3 74 2-76 10-86 (627)
86 PF13202 EF-hand_5: EF hand; P 98.0 1E-05 2.2E-10 37.1 3.1 22 88-109 3-24 (25)
87 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.8E-06 6E-11 54.3 1.5 61 82-144 52-112 (113)
88 KOG0040 Ca2+-binding actin-bun 98.0 1.5E-05 3.3E-10 69.1 6.1 70 84-153 2253-2329(2399)
89 KOG0751 Mitochondrial aspartat 98.0 0.00016 3.4E-09 56.6 11.0 62 84-145 179-241 (694)
90 PF14788 EF-hand_10: EF hand; 98.0 6.4E-05 1.4E-09 40.3 6.2 47 101-147 2-48 (51)
91 PF13202 EF-hand_5: EF hand; P 97.8 4.2E-05 9.2E-10 35.0 3.5 24 13-36 1-24 (25)
92 KOG0377 Protein serine/threoni 97.8 0.00011 2.4E-09 56.7 7.6 68 45-112 545-615 (631)
93 PRK12309 transaldolase/EF-hand 97.8 0.00018 3.8E-09 55.8 8.2 59 41-113 328-386 (391)
94 KOG1707 Predicted Ras related/ 97.5 0.0012 2.6E-08 53.0 9.9 146 2-150 186-379 (625)
95 PF10591 SPARC_Ca_bdg: Secrete 97.5 4.9E-05 1.1E-09 48.6 1.3 63 43-108 50-112 (113)
96 PF09279 EF-hand_like: Phospho 97.4 0.00051 1.1E-08 41.4 4.9 64 86-150 2-71 (83)
97 KOG0046 Ca2+-binding actin-bun 97.4 0.0013 2.8E-08 52.0 8.0 70 84-154 19-91 (627)
98 KOG4666 Predicted phosphate ac 97.4 0.0011 2.5E-08 49.3 7.3 104 9-114 257-361 (412)
99 PF05042 Caleosin: Caleosin re 97.1 0.01 2.2E-07 40.4 9.3 136 11-147 7-165 (174)
100 KOG4065 Uncharacterized conser 97.0 0.004 8.6E-08 39.3 6.1 59 87-145 70-142 (144)
101 smart00054 EFh EF-hand, calciu 96.9 0.0019 4E-08 29.6 3.1 25 123-147 3-27 (29)
102 PF09279 EF-hand_like: Phospho 96.8 0.0065 1.4E-07 36.5 5.6 63 13-76 2-70 (83)
103 KOG4065 Uncharacterized conser 96.7 0.012 2.6E-07 37.2 6.5 35 4-40 62-96 (144)
104 smart00054 EFh EF-hand, calciu 96.7 0.0044 9.5E-08 28.2 3.7 27 13-39 2-28 (29)
105 KOG1955 Ral-GTPase effector RA 96.6 0.007 1.5E-07 47.7 5.8 64 83-148 230-293 (737)
106 KOG1265 Phospholipase C [Lipid 96.4 0.1 2.2E-06 44.4 12.0 121 22-149 159-300 (1189)
107 KOG0998 Synaptic vesicle prote 96.4 0.0047 1E-07 52.8 4.4 143 5-152 123-349 (847)
108 PLN02952 phosphoinositide phos 96.3 0.061 1.3E-06 44.2 9.8 89 60-149 13-111 (599)
109 KOG1955 Ral-GTPase effector RA 96.1 0.025 5.5E-07 44.7 6.7 71 4-76 224-294 (737)
110 KOG1029 Endocytic adaptor prot 96.1 0.012 2.7E-07 48.8 5.2 65 8-74 192-256 (1118)
111 KOG0042 Glycerol-3-phosphate d 96.0 0.023 5E-07 45.7 6.0 75 4-78 586-660 (680)
112 PF09069 EF-hand_3: EF-hand; 95.8 0.18 3.9E-06 30.8 8.2 66 84-152 3-79 (90)
113 KOG3555 Ca2+-binding proteogly 95.6 0.029 6.2E-07 42.4 4.8 65 81-149 247-311 (434)
114 KOG0035 Ca2+-binding actin-bun 95.6 0.27 5.8E-06 42.1 10.8 103 5-108 741-848 (890)
115 KOG1264 Phospholipase C [Lipid 95.5 0.11 2.3E-06 43.9 8.4 145 5-150 137-295 (1267)
116 KOG2243 Ca2+ release channel ( 95.3 0.037 7.9E-07 49.1 5.1 58 89-147 4062-4119(5019)
117 KOG4578 Uncharacterized conser 95.1 0.018 3.8E-07 43.2 2.5 64 85-148 334-398 (421)
118 KOG4347 GTPase-activating prot 95.1 0.26 5.6E-06 40.5 9.0 101 4-106 497-612 (671)
119 PF05517 p25-alpha: p25-alpha 94.8 0.41 8.8E-06 32.4 8.3 64 90-153 8-74 (154)
120 KOG0169 Phosphoinositide-speci 94.7 0.47 1E-05 39.8 9.6 99 46-149 135-233 (746)
121 KOG3555 Ca2+-binding proteogly 94.7 0.096 2.1E-06 39.7 5.3 98 12-114 212-312 (434)
122 PF05517 p25-alpha: p25-alpha 94.0 0.7 1.5E-05 31.3 8.0 63 14-76 2-70 (154)
123 KOG4347 GTPase-activating prot 93.5 0.15 3.2E-06 41.8 4.7 77 65-142 536-612 (671)
124 KOG0042 Glycerol-3-phosphate d 93.5 0.23 5E-06 40.3 5.6 69 85-153 594-662 (680)
125 PF08726 EFhand_Ca_insen: Ca2+ 93.4 0.059 1.3E-06 31.1 1.8 56 83-146 5-67 (69)
126 KOG3866 DNA-binding protein of 93.0 0.3 6.6E-06 36.6 5.2 61 89-149 249-325 (442)
127 KOG0998 Synaptic vesicle prote 92.7 0.14 3.1E-06 44.1 3.8 145 4-153 4-195 (847)
128 KOG4578 Uncharacterized conser 92.6 0.11 2.3E-06 39.2 2.5 65 48-112 334-398 (421)
129 PF05042 Caleosin: Caleosin re 92.3 0.93 2E-05 31.1 6.5 36 116-151 92-127 (174)
130 PLN02952 phosphoinositide phos 90.6 4.7 0.0001 33.6 10.1 87 24-111 13-109 (599)
131 PF08976 DUF1880: Domain of un 89.4 0.39 8.5E-06 30.6 2.5 33 117-149 4-36 (118)
132 cd07313 terB_like_2 tellurium 89.1 1.9 4.1E-05 26.8 5.6 83 25-109 13-97 (104)
133 PF09069 EF-hand_3: EF-hand; 88.3 4.2 9E-05 24.9 7.2 63 11-76 3-76 (90)
134 PLN02228 Phosphoinositide phos 86.7 4.2 9.2E-05 33.6 7.4 66 82-149 22-93 (567)
135 PLN02222 phosphoinositide phos 86.3 3.1 6.8E-05 34.5 6.5 65 83-149 24-91 (581)
136 KOG4286 Dystrophin-like protei 86.0 15 0.00033 31.4 10.1 156 10-169 419-601 (966)
137 PF14513 DAG_kinase_N: Diacylg 85.7 2.1 4.6E-05 28.4 4.4 36 60-95 45-80 (138)
138 PLN02230 phosphoinositide phos 85.2 5.7 0.00012 33.1 7.5 67 82-149 27-103 (598)
139 PF08414 NADPH_Ox: Respiratory 85.2 6.3 0.00014 24.4 5.9 61 9-74 28-91 (100)
140 KOG1707 Predicted Ras related/ 84.5 2 4.2E-05 35.4 4.4 65 4-74 308-376 (625)
141 KOG4004 Matricellular protein 83.0 0.69 1.5E-05 32.4 1.3 55 90-146 193-248 (259)
142 KOG2243 Ca2+ release channel ( 83.0 2.8 6.1E-05 38.3 5.0 57 16-73 4062-4118(5019)
143 KOG0035 Ca2+-binding actin-bun 82.4 5.2 0.00011 34.7 6.3 68 83-150 746-818 (890)
144 KOG3866 DNA-binding protein of 81.3 3 6.6E-05 31.5 4.1 21 17-37 250-270 (442)
145 PF08414 NADPH_Ox: Respiratory 81.1 9.9 0.00022 23.6 5.6 65 83-152 29-96 (100)
146 COG3763 Uncharacterized protei 80.9 6.9 0.00015 22.5 4.6 34 24-57 35-68 (71)
147 KOG3449 60S acidic ribosomal p 80.1 12 0.00027 23.6 6.3 55 13-72 3-57 (112)
148 PF08976 DUF1880: Domain of un 79.6 1.8 4E-05 27.6 2.2 31 44-74 4-34 (118)
149 PRK00523 hypothetical protein; 77.2 8.5 0.00018 22.3 4.2 34 24-57 36-69 (72)
150 PF03672 UPF0154: Uncharacteri 75.6 9.9 0.00021 21.6 4.2 33 25-57 29-61 (64)
151 PLN02223 phosphoinositide phos 75.6 15 0.00033 30.3 6.8 68 82-150 14-94 (537)
152 PF00404 Dockerin_1: Dockerin 75.2 3.8 8.3E-05 17.6 1.9 14 94-107 1-14 (21)
153 PF08726 EFhand_Ca_insen: Ca2+ 73.3 6.3 0.00014 22.8 3.1 52 12-71 7-65 (69)
154 KOG4403 Cell surface glycoprot 72.5 11 0.00024 30.0 5.1 88 59-150 40-131 (575)
155 KOG0039 Ferric reductase, NADH 72.5 14 0.00029 31.4 6.1 84 61-152 2-93 (646)
156 PRK01844 hypothetical protein; 71.9 12 0.00025 21.8 3.9 34 24-57 35-68 (72)
157 cd07313 terB_like_2 tellurium 71.6 21 0.00045 22.0 5.7 51 98-148 13-65 (104)
158 COG4103 Uncharacterized protei 69.7 30 0.00066 23.1 6.9 90 15-108 34-125 (148)
159 PF07308 DUF1456: Protein of u 69.3 19 0.00042 20.7 5.8 48 101-148 14-61 (68)
160 PF09068 EF-hand_2: EF hand; 69.3 29 0.00063 22.7 8.4 27 86-112 99-125 (127)
161 PF02761 Cbl_N2: CBL proto-onc 67.8 24 0.00053 21.3 6.2 49 97-145 19-67 (85)
162 PLN02222 phosphoinositide phos 67.7 30 0.00065 29.0 7.0 66 5-75 22-90 (581)
163 PF01023 S_100: S-100/ICaBP ty 67.7 15 0.00034 19.0 4.4 31 9-39 4-36 (44)
164 KOG4004 Matricellular protein 67.7 2.2 4.7E-05 30.1 0.5 48 60-110 201-248 (259)
165 KOG1954 Endocytosis/signaling 67.4 14 0.0003 29.1 4.7 58 84-144 444-501 (532)
166 KOG2871 Uncharacterized conser 66.3 5.9 0.00013 30.8 2.5 61 83-143 308-369 (449)
167 PLN02228 Phosphoinositide phos 66.2 42 0.00091 28.1 7.5 65 6-75 22-92 (567)
168 PF14513 DAG_kinase_N: Diacylg 64.2 40 0.00087 22.4 6.5 36 98-133 46-82 (138)
169 PLN02230 phosphoinositide phos 63.2 51 0.0011 27.8 7.5 63 12-75 30-102 (598)
170 PF12174 RST: RCD1-SRO-TAF4 (R 61.1 28 0.0006 20.2 4.2 16 97-112 38-53 (70)
171 TIGR01639 P_fal_TIGR01639 Plas 60.9 23 0.0005 19.8 3.8 31 26-56 8-38 (61)
172 KOG1785 Tyrosine kinase negati 59.9 87 0.0019 24.9 8.0 86 24-113 187-275 (563)
173 KOG2871 Uncharacterized conser 59.6 12 0.00025 29.3 3.0 59 11-69 309-368 (449)
174 KOG1265 Phospholipase C [Lipid 59.3 91 0.002 27.7 8.3 97 55-158 156-259 (1189)
175 PF02761 Cbl_N2: CBL proto-onc 58.9 38 0.00082 20.5 6.1 51 25-75 20-70 (85)
176 PRK09430 djlA Dna-J like membr 57.5 78 0.0017 23.6 9.2 97 24-128 68-174 (267)
177 PTZ00373 60S Acidic ribosomal 56.4 50 0.0011 21.1 6.3 53 14-71 6-58 (112)
178 KOG2301 Voltage-gated Ca2+ cha 56.4 8.7 0.00019 35.9 2.2 70 4-74 1410-1483(1592)
179 TIGR01565 homeo_ZF_HD homeobox 55.8 34 0.00074 19.0 4.7 35 3-42 6-44 (58)
180 KOG3449 60S acidic ribosomal p 53.8 55 0.0012 20.8 5.2 53 87-144 4-56 (112)
181 PF07308 DUF1456: Protein of u 53.6 42 0.0009 19.3 5.2 46 29-74 15-60 (68)
182 PF11116 DUF2624: Protein of u 53.2 49 0.0011 20.0 6.9 45 99-143 13-57 (85)
183 TIGR01848 PHA_reg_PhaR polyhyd 53.1 43 0.00093 21.2 4.3 20 92-111 11-30 (107)
184 PF08461 HTH_12: Ribonuclease 52.8 28 0.00061 19.7 3.3 36 25-60 11-46 (66)
185 PF05099 TerB: Tellurite resis 52.7 14 0.00029 24.2 2.3 78 25-104 37-116 (140)
186 PTZ00373 60S Acidic ribosomal 52.5 60 0.0013 20.8 6.6 51 89-144 8-58 (112)
187 PRK08181 transposase; Validate 51.9 85 0.0018 23.5 6.5 60 98-160 4-63 (269)
188 PF12987 DUF3871: Domain of un 51.5 1.1E+02 0.0023 23.4 7.0 65 97-161 214-298 (323)
189 TIGR02787 codY_Gpos GTP-sensin 50.9 72 0.0016 23.5 5.7 48 4-57 176-223 (251)
190 PF07879 PHB_acc_N: PHB/PHA ac 50.3 26 0.00055 19.9 2.7 22 91-112 10-31 (64)
191 COG5069 SAC6 Ca2+-binding acti 49.1 44 0.00096 27.2 4.8 83 7-93 481-563 (612)
192 PF12419 DUF3670: SNF2 Helicas 47.2 57 0.0012 21.6 4.6 49 97-145 80-138 (141)
193 KOG4301 Beta-dystrobrevin [Cyt 47.1 47 0.001 25.8 4.5 63 87-150 113-175 (434)
194 cd00086 homeodomain Homeodomai 46.2 46 0.001 17.7 6.1 46 3-55 5-50 (59)
195 PF09336 Vps4_C: Vps4 C termin 46.1 27 0.00059 19.6 2.5 26 100-125 29-54 (62)
196 PF11020 DUF2610: Domain of un 45.8 56 0.0012 19.4 3.7 42 34-75 35-77 (82)
197 PF03979 Sigma70_r1_1: Sigma-7 45.5 24 0.00051 21.0 2.3 31 97-129 18-48 (82)
198 PF00046 Homeobox: Homeobox do 44.8 49 0.0011 17.6 6.1 43 4-53 6-48 (57)
199 PF13551 HTH_29: Winged helix- 44.5 74 0.0016 19.5 6.4 51 5-55 58-110 (112)
200 cd07316 terB_like_DjlA N-termi 43.9 75 0.0016 19.4 7.0 82 25-108 13-97 (106)
201 PF06569 DUF1128: Protein of u 43.5 40 0.00086 19.6 2.9 11 28-38 54-64 (71)
202 COG5611 Predicted nucleic-acid 42.3 93 0.002 20.1 4.9 62 12-73 22-85 (130)
203 PF08355 EF_assoc_1: EF hand a 42.1 24 0.00051 20.8 1.9 24 128-151 10-33 (76)
204 PLN02223 phosphoinositide phos 41.6 1.5E+02 0.0032 24.8 6.8 62 13-75 18-92 (537)
205 cd05833 Ribosomal_P2 Ribosomal 40.8 95 0.0021 19.7 6.6 51 90-145 7-57 (109)
206 KOG0493 Transcription factor E 40.1 83 0.0018 23.4 4.7 45 3-54 251-295 (342)
207 KOG2301 Voltage-gated Ca2+ cha 39.8 36 0.00078 32.2 3.5 69 80-149 1413-1485(1592)
208 cd07176 terB tellurite resista 39.0 58 0.0013 20.0 3.5 79 25-106 16-99 (111)
209 KOG1954 Endocytosis/signaling 38.9 86 0.0019 25.0 4.9 26 45-70 475-500 (532)
210 PF07499 RuvA_C: RuvA, C-termi 38.6 61 0.0013 16.8 4.0 38 103-144 3-40 (47)
211 KOG4629 Predicted mechanosensi 36.1 2.2E+02 0.0047 24.8 7.1 59 86-151 406-464 (714)
212 cd04790 HTH_Cfa-like_unk Helix 35.8 1.5E+02 0.0032 20.5 5.5 15 100-114 115-129 (172)
213 KOG4301 Beta-dystrobrevin [Cyt 34.9 1.4E+02 0.0031 23.3 5.4 54 19-73 118-171 (434)
214 KOG3077 Uncharacterized conser 34.8 1.9E+02 0.0042 21.6 8.3 66 84-149 64-130 (260)
215 cd07177 terB_like tellurium re 34.7 1E+02 0.0022 18.4 4.2 16 25-40 13-28 (104)
216 PLN00138 large subunit ribosom 34.0 1.3E+02 0.0028 19.3 5.5 52 15-71 5-56 (113)
217 PF13720 Acetyltransf_11: Udp 33.9 83 0.0018 18.8 3.4 49 4-57 27-75 (83)
218 PF01885 PTS_2-RNA: RNA 2'-pho 33.0 98 0.0021 21.7 4.1 36 94-129 26-61 (186)
219 PF10437 Lip_prot_lig_C: Bacte 31.7 1.2E+02 0.0025 18.0 3.9 42 103-146 44-86 (86)
220 TIGR03573 WbuX N-acetyl sugar 31.3 1.5E+02 0.0033 22.9 5.3 14 135-148 301-314 (343)
221 PF14771 DUF4476: Domain of un 30.9 1.3E+02 0.0027 18.2 8.7 11 64-74 40-50 (95)
222 PF03250 Tropomodulin: Tropomo 30.8 37 0.00081 22.8 1.6 54 2-74 21-74 (147)
223 PF01885 PTS_2-RNA: RNA 2'-pho 30.7 1.3E+02 0.0029 21.1 4.5 37 22-58 27-63 (186)
224 KOG3077 Uncharacterized conser 29.7 2.4E+02 0.0052 21.1 10.8 66 10-75 63-129 (260)
225 PF04361 DUF494: Protein of un 29.7 1.8E+02 0.004 19.7 5.3 44 85-130 4-48 (155)
226 PRK00819 RNA 2'-phosphotransfe 28.9 1.5E+02 0.0034 20.7 4.5 33 96-128 29-61 (179)
227 PF07128 DUF1380: Protein of u 28.4 1.3E+02 0.0029 20.0 3.9 48 101-148 27-79 (139)
228 PHA02105 hypothetical protein 27.3 1.2E+02 0.0026 16.8 3.2 48 27-74 4-56 (68)
229 PF09851 SHOCT: Short C-termin 27.2 80 0.0017 14.8 3.7 24 8-37 3-26 (31)
230 COG2818 Tag 3-methyladenine DN 27.1 1.5E+02 0.0032 21.0 4.0 42 10-51 54-95 (188)
231 KOG4403 Cell surface glycoprot 26.8 3.5E+02 0.0076 22.0 8.3 87 23-113 40-130 (575)
232 cd04411 Ribosomal_P1_P2_L12p R 26.4 1.7E+02 0.0038 18.4 7.0 42 101-147 17-58 (105)
233 KOG4286 Dystrophin-like protei 26.3 3E+02 0.0065 24.2 6.3 104 44-148 417-533 (966)
234 PF05256 UPF0223: Uncharacteri 26.2 1E+02 0.0023 18.7 2.9 54 5-58 11-65 (88)
235 KOG0843 Transcription factor E 25.8 2.4E+02 0.0053 19.8 5.0 45 3-54 107-151 (197)
236 PRK00819 RNA 2'-phosphotransfe 25.6 2.2E+02 0.0048 19.9 4.8 36 22-57 28-63 (179)
237 PF09107 SelB-wing_3: Elongati 25.4 1.2E+02 0.0026 16.2 3.4 29 25-58 8-36 (50)
238 PF11422 IBP39: Initiator bind 25.1 2.5E+02 0.0053 19.7 8.3 67 49-116 21-91 (181)
239 PF02885 Glycos_trans_3N: Glyc 25.0 1.4E+02 0.003 16.7 5.0 15 42-56 13-27 (66)
240 PF04876 Tenui_NCP: Tenuivirus 24.7 2.3E+02 0.005 19.2 7.6 54 50-112 86-139 (175)
241 PF06648 DUF1160: Protein of u 24.3 2.1E+02 0.0046 18.6 5.8 43 84-129 37-80 (122)
242 PF12486 DUF3702: ImpA domain 24.0 2.4E+02 0.0051 19.1 5.9 29 9-37 67-95 (148)
243 PF12631 GTPase_Cys_C: Catalyt 23.6 1.6E+02 0.0034 16.9 3.6 15 41-55 57-71 (73)
244 PF01325 Fe_dep_repress: Iron 23.4 1.4E+02 0.0031 16.4 5.0 47 5-58 2-48 (60)
245 KOG1264 Phospholipase C [Lipid 23.4 5.5E+02 0.012 23.1 7.4 88 62-150 159-251 (1267)
246 COG4103 Uncharacterized protei 23.4 2.4E+02 0.0053 19.0 5.7 62 88-151 34-97 (148)
247 cd08032 LARP_7 La RNA-binding 23.3 1E+02 0.0022 18.5 2.4 21 125-145 28-48 (82)
248 COG3146 Uncharacterized protei 22.7 1.1E+02 0.0024 23.9 3.0 33 133-165 182-214 (387)
249 KOG4718 Non-SMC (structural ma 22.5 3.1E+02 0.0067 19.9 5.1 58 1-58 89-148 (235)
250 PF08044 DUF1707: Domain of un 22.3 1.5E+02 0.0032 16.0 2.8 30 24-53 20-49 (53)
251 TIGR02675 tape_meas_nterm tape 22.3 1.7E+02 0.0038 16.9 4.1 34 4-39 9-42 (75)
252 PF02337 Gag_p10: Retroviral G 22.0 1.3E+02 0.0029 18.4 2.8 40 106-145 14-58 (90)
253 PF02459 Adeno_terminal: Adeno 21.5 2.4E+02 0.0052 23.5 4.8 48 86-133 457-504 (548)
254 PLN02508 magnesium-protoporphy 21.5 2.2E+02 0.0047 22.2 4.3 16 42-57 36-51 (357)
255 PF07848 PaaX: PaaX-like prote 21.4 1.8E+02 0.0039 16.7 3.8 43 85-129 5-47 (70)
256 PF13623 SurA_N_2: SurA N-term 21.4 2.6E+02 0.0057 18.7 7.9 40 106-145 95-144 (145)
257 PRK04387 hypothetical protein; 21.2 2.1E+02 0.0046 17.5 4.3 53 5-57 11-64 (90)
258 PF12995 DUF3879: Domain of un 21.0 3E+02 0.0064 19.1 5.7 37 28-64 2-38 (186)
259 COG4465 CodY Pleiotropic trans 20.8 3.4E+02 0.0073 19.8 4.9 48 4-57 182-229 (261)
260 cd00076 H4 Histone H4, one of 20.2 2.2E+02 0.0047 17.2 7.9 66 44-117 14-82 (85)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=162.48 Aligned_cols=146 Identities=57% Similarity=0.988 Sum_probs=140.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCC
Q 044644 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 81 (183)
Q Consensus 2 ~~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~ 81 (183)
.++|+++++++|+++|..+|++++|.|+..+|..+++.+|..++...+..++..++. +.+.|+|.+|+.++........
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 467999999999999999999999999999999999999999999999999999999 8899999999999998888888
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
..+++..+|+.||.|++|+|+..+++.++..+|..+++++++.++..++.|++|.|+|++|++.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-25 Score=151.03 Aligned_cols=144 Identities=67% Similarity=1.074 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCc--
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS-- 82 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~-- 82 (183)
++..++..++.+|..+|.+++|+|+..++..+++.+|..++..++..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 678889999999999999999999999999999999999999999999999999999999999999999866544333
Q ss_pred --HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 83 --EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 83 --~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
.+.+..+|+.+|.+++|+||.+|++.++..+|.+.+..++..++..+|.|++|.|+|++|+..+..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 458999999999999999999999999999999999999999999999999999999999998753
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=5.7e-24 Score=143.55 Aligned_cols=148 Identities=93% Similarity=1.320 Sum_probs=137.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCC
Q 044644 1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT 80 (183)
Q Consensus 1 l~~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~ 80 (183)
|+..++++++..++..|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|++++|+.++.......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 67889999999999999999999999999999999999999888999999999999999999999999999987665544
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
...+.+..+|..+|.+++|.|+.++|..++...+..++...+..++..+|.+++|.|+|++|+.++..
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 45678899999999999999999999999999998899999999999999999999999999988753
No 4
>PTZ00183 centrin; Provisional
Probab=99.92 E-value=4.2e-23 Score=140.70 Aligned_cols=146 Identities=51% Similarity=0.857 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCc
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~ 82 (183)
.++++++++.+..+|..+|.+++|.|+..+|..++..+|..++...+..++..++.+++|.|++.+|+..+.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 46889999999999999999999999999999999999988899999999999999999999999999988765444446
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
.+.+..+|+.+|.+++|.|+..||..++...+..++..++..++..++.+++|.|++++|..++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999999999998765
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6e-22 Score=129.29 Aligned_cols=146 Identities=47% Similarity=0.795 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCc
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~ 82 (183)
..+++++.+.++..|..+|.+++|+|+.+++..+..++|+.+..+++..++..+++.+.|.|+|++|...+.........
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 35778888999999999999999999999999999999999999999999999999999999999999998776665568
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
.+.+..+|+.+|-|++|.|+..+|+.+...+|++++++++..++..++.+.+|.|+.++|..++..
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999999988753
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.88 E-value=1.5e-20 Score=122.00 Aligned_cols=140 Identities=40% Similarity=0.733 Sum_probs=133.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcH
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 83 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~ 83 (183)
.|++.+|+.++.+|..+|.+++|.|+.++++..+.++|..++++++..++... +|-|+|.-|+.++...+....++
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHH
Confidence 57889999999999999999999999999999999999999999999998764 78999999999999999888899
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
+.+..+|+.+|.+++|+|..+.++.+|...|..++++++..++..+-.+..|.|+|..|+..+.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998776
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-19 Score=124.81 Aligned_cols=143 Identities=37% Similarity=0.656 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhhCCC-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhhcCCCC
Q 044644 4 QLTDDQISEFKEAFSLFDKD-GDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT-IDFPEFLNLMARKMKDTD 81 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~-v~~~ef~~~~~~~~~~~~ 81 (183)
.|+..||..+...|.+++.+ ++|+++.+||..+. .+.. .....+++..++.+++|. |+|++|+..+........
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~---Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELAL---NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhc---CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 48999999999999999999 99999999999987 3322 334567777787777777 999999999998888777
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCC--H----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLT--D----EEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~--~----~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
..+++..+|+.||.+++|.|+.+|+.+++..+- ...+ + ..++.++..+|.++||.|+++||+.++.+.+
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 777999999999999999999999999998863 3444 3 3456678999999999999999999988764
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-18 Score=118.38 Aligned_cols=135 Identities=29% Similarity=0.492 Sum_probs=124.1
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHH
Q 044644 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKE 88 (183)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~ 88 (183)
-..+...|...|+++.|.|+.+|++++|...++ ..+.+-++.|...+|.+..|+|++.||..++..+ ..|+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 457889999999999999999999999987654 5778889999999999999999999999999865 67999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 89 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
+|+.+|.|+.|.|+..||+++|..+|..++++..+.+++.++.-..|.|.+++|++++.....
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888999999999998876543
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=111.31 Aligned_cols=144 Identities=49% Similarity=0.793 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHhhcCCC-
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD--GNGTIDFPEFLNLMARKMKDT- 80 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~v~~~ef~~~~~~~~~~~- 80 (183)
.++++....++.+|..+|..++|+|+..+...+|+.+|.+|++.++.+....+..+ +-.+++|++|+-++.......
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 56778889999999999999999999999999999999999999999999888776 446899999999887665432
Q ss_pred -CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 81 -DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 81 -~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
-..+.+.+-++.+|.+++|.|...|++.+|..+|..++++++..++.-. .|.+|.|+|+.|+..+++
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 2357788889999999999999999999999999999999999999887 788999999999987753
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-17 Score=115.37 Aligned_cols=147 Identities=26% Similarity=0.447 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCC
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 81 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~ 81 (183)
+.+++.|+.+|.+-|..-. .+|.++.++|+.++...+. .-+..-+..+|+.+|.+++|.|+|.||+..++..+...
T Consensus 21 t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt- 97 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT- 97 (193)
T ss_pred cCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-
Confidence 4678899998888887633 4799999999999999875 44556689999999999999999999999998877666
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNL----GE-------KLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
..+.+..+|+.||.|++|.|+..|+-.++..+ +. ......+..+|+.+|.|+||.||+++|......-+
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 66788889999999999999999999988663 21 12345678899999999999999999999876544
Q ss_pred Hh
Q 044644 151 RR 152 (183)
Q Consensus 151 ~~ 152 (183)
..
T Consensus 178 ~i 179 (193)
T KOG0044|consen 178 SI 179 (193)
T ss_pred HH
Confidence 33
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.78 E-value=1.6e-17 Score=123.74 Aligned_cols=142 Identities=23% Similarity=0.433 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCc
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~ 82 (183)
+.+++--.+++.+|..+|.+++|.++..++...+..+... +..+.+..++..+|.+.+|.|+|++|..++.. .
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~ 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h
Confidence 4455556789999999999999999999999999999776 78888999999999999999999999999975 4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
+..+..+|..+|.++||.|+.+|+.+.|..+|.++++++++++++.+|.++++.|+++||..++...+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 567999999999999999999999999999999999999999999999999999999999999887763
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6e-14 Score=102.04 Aligned_cols=136 Identities=24% Similarity=0.427 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCC-C---cH
Q 044644 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-D---SE 83 (183)
Q Consensus 9 e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~-~---~~ 83 (183)
.+.+-++.|...|.+++|.++.+||..+|.--. .....-.+...+..+|+|++|.|+++||+.-+-...... . ..
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 456778899999999999999999999885442 234556688999999999999999999999776544311 1 12
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
.+-..++...|.|+||+++.+|+..++...+......++..|+...|.|+||++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 3345778888999999999999999998888888889999999999999999999999875
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=9e-14 Score=101.12 Aligned_cols=147 Identities=22% Similarity=0.381 Sum_probs=116.8
Q ss_pred CCHHHH-HHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC-----
Q 044644 5 LTDDQI-SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK----- 78 (183)
Q Consensus 5 l~~~e~-~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~----- 78 (183)
|++++. .++..++.++|.+++|.|+..++..++..........++.+-|..++.+.+|.|+|+++...+.....
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~ 149 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEF 149 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcccc
Confidence 444454 47889999999999999999999999887766666777888899999999999999999987764211
Q ss_pred -CCCcH-------HHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 79 -DTDSE-------EELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 79 -~~~~~-------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
..... ..-..-|+.-|.|++|.++.+||..++..-. ..+.+-.+..-+..+|+|+||.|+++||+.-++..
T Consensus 150 ~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 150 PDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred ccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 11111 1234569999999999999999999985532 34555567888999999999999999999998876
Q ss_pred HH
Q 044644 150 RR 151 (183)
Q Consensus 150 ~~ 151 (183)
..
T Consensus 230 ~~ 231 (325)
T KOG4223|consen 230 EG 231 (325)
T ss_pred cC
Confidence 53
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.47 E-value=2.2e-12 Score=103.81 Aligned_cols=105 Identities=22% Similarity=0.404 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAE---LQDMINEVDADGNGTIDFPEFLNLMARKMK 78 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~ 78 (183)
+.|...|+..+++.|..+|++++|.+ +..++..+| ..+++.+ +..+|..+|.+++|.|+++||+.++....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 36788999999999999999999997 888899999 5888877 89999999999999999999999998643
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 044644 79 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 112 (183)
Q Consensus 79 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (183)
.....+.+..+|+.+|.|++|.|+.+||..++..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3346778999999999999999999999999988
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.39 E-value=4.8e-12 Score=87.50 Aligned_cols=86 Identities=30% Similarity=0.523 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHH
Q 044644 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEA 89 (183)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (183)
|++|+.+|..+|.|++|.|+..||+++|..+|+.++.+..+.|+++++..++|.|.|++|++++..+ ..+.++
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~ 195 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEA 195 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHH
Confidence 4567777777777777777777777777777777777777777777776667777777777777654 456777
Q ss_pred HHhhcCCCCCccc
Q 044644 90 FRVFDKDQNGFIS 102 (183)
Q Consensus 90 f~~~D~~~~g~i~ 102 (183)
|+..|.+.+|.|+
T Consensus 196 Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 196 FRRRDTAQQGSIT 208 (221)
T ss_pred HHHhccccceeEE
Confidence 7777777777554
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.39 E-value=3.7e-12 Score=77.75 Aligned_cols=68 Identities=25% Similarity=0.441 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 84 EELKEAFRVFDK-DQNGFISAAELRHVMTN-LGEKLTD-EEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 84 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
..+..+|+.||. +++|+|+.+||+.++.. +|..++. .++..+++.+|.|+||.|+|+||+.++.....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 467899999999 99999999999999999 8877888 89999999999999999999999998887643
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=2.6e-12 Score=74.58 Aligned_cols=62 Identities=50% Similarity=0.952 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE----EVDEMIREADVDGDGQINYEEFVKVM 146 (183)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~g~i~~~ef~~~l 146 (183)
.+..+|+.+|.+++|.|+.+||..++..++...++. .++.++..+|.|++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999999999999999999999998666554 45556999999999999999999875
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=1.8e-11 Score=82.75 Aligned_cols=108 Identities=31% Similarity=0.474 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-----CHH
Q 044644 46 EAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-----TDE 120 (183)
Q Consensus 46 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~ 120 (183)
..++..+|..+|.+++|.|+..++...+..+...+ ....+..++..+|.+++|.|+.++|..++....... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 35678999999999999999999999998765544 778999999999999999999999999998865433 345
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhH
Q 044644 121 EVDEMIREADVDGDGQINYEEFVKVMMAKRRRKR 154 (183)
Q Consensus 121 ~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 154 (183)
++..+|..+|.|++|+|+..++..++.....+..
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 8999999999999999999999999988765554
No 19
>PTZ00183 centrin; Provisional
Probab=99.33 E-value=1.3e-10 Score=79.04 Aligned_cols=102 Identities=30% Similarity=0.380 Sum_probs=86.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 044644 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEM 125 (183)
Q Consensus 47 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l 125 (183)
..+..+|..+|.+++|.|+..+|..++...- .......+..+|..+|.+++|.|+.++|..++... ........+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4467889999999999999999999987542 22355779999999999999999999999987654 344566788999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHH
Q 044644 126 IREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 126 ~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
|..+|.+++|.|+.++|..++...
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 999999999999999999998754
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.31 E-value=3.3e-11 Score=73.64 Aligned_cols=69 Identities=25% Similarity=0.496 Sum_probs=62.3
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 044644 84 EELKEAFRVFD-KDQNG-FISAAELRHVMTN-----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 152 (183)
..+..+|+.+| .+++| .|+.+|++.++.. +|...++.++..+++.+|.|++|.|+|++|+.++......
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 46889999998 79999 6999999999999 7888899999999999999999999999999988765543
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.31 E-value=1.8e-11 Score=71.03 Aligned_cols=62 Identities=45% Similarity=0.855 Sum_probs=51.7
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHH----HHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEA----ELQDMINEVDADGNGTIDFPEFLNLM 73 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~g~v~~~ef~~~~ 73 (183)
+++.+|..+|.+++|+|+..||..++..++...+.. .+..+|..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 578999999999999999999999999998766543 45555888888888888888888764
No 22
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.29 E-value=8.7e-11 Score=76.17 Aligned_cols=143 Identities=27% Similarity=0.486 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCC-----------CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 044644 4 QLTDDQISEFKEAFSLFDKDG-----------DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNL 72 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~-----------~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~ 72 (183)
-++..+|-++...|..+.++. .-+++.+.+.. +..+..++- -++|...+..++.|.++|++|+.+
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELkenpf---k~ri~e~FSeDG~GnlsfddFlDm 96 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKENPF---KRRICEVFSEDGRGNLSFDDFLDM 96 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcChH---HHHHHHHhccCCCCcccHHHHHHH
Confidence 356788888888887775431 11333443332 223332333 345566677799999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHH----HHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 73 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEV----DEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 73 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~----~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
++......+..-....+|+.+|-|+|+.|...++...+..+- ..++++++ ++++...|.|+||.+++.+|...+.
T Consensus 97 fSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 97 FSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 999888877777889999999999999999999999998864 45777665 4567788999999999999998876
Q ss_pred HHH
Q 044644 148 AKR 150 (183)
Q Consensus 148 ~~~ 150 (183)
..+
T Consensus 177 raP 179 (189)
T KOG0038|consen 177 RAP 179 (189)
T ss_pred hCc
Confidence 544
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.29 E-value=3.3e-11 Score=73.59 Aligned_cols=69 Identities=17% Similarity=0.365 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhCC-CCCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 8 DQISEFKEAFSLFDK-DGDGCITTKELGTVMRS-LGQNPTE-AELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 8 ~e~~~l~~~f~~~d~-~~~g~l~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.-+..+..+|..||. +++|+|+..+|+.++.. +|..++. .++..++..+|.+++|.|+|++|+.++..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 446789999999999 99999999999999999 8877777 899999999999999999999999988764
No 24
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=7.5e-10 Score=76.71 Aligned_cols=126 Identities=23% Similarity=0.357 Sum_probs=103.9
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-CCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHH
Q 044644 26 GCITTKELGTVMRSLGQNPTEAELQDMINEVDAD-GNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAA 104 (183)
Q Consensus 26 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 104 (183)
..++.+.+.++.+.- ..+..+++.+++.+-.. .+|.++-++|..++....+..........+|+.+|.|++|.|+..
T Consensus 7 ~~~~~~~~e~l~~~t--~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQT--KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFL 84 (193)
T ss_pred ccCCcHHHHHHHHhc--CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHH
Confidence 345555565555443 46788899999998765 489999999999999887755566778899999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 105 ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
||...+........++-+...|..+|.|++|.|+++|++.++.......
T Consensus 85 Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~ 133 (193)
T KOG0044|consen 85 EFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMT 133 (193)
T ss_pred HHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHc
Confidence 9999998877777888888899999999999999999999988765443
No 25
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=1.9e-10 Score=71.78 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.++++++..++.+|..+|.+++|.|+..++..++...+ ++..++..++..++.+++|.|++++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999875 678899999999999999999999999988654
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.22 E-value=1.3e-10 Score=70.99 Aligned_cols=68 Identities=24% Similarity=0.478 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 84 EELKEAFRVFDK-DQ-NGFISAAELRHVMTN---LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
..+..+|..||. +| +|+|+.+||+.++.. +|.+++++++..+++.+|.|++|.|+|++|+.++.....
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 457788999998 67 899999999999963 688899999999999999999999999999998876543
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.22 E-value=6.3e-10 Score=74.73 Aligned_cols=101 Identities=30% Similarity=0.423 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 044644 48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMI 126 (183)
Q Consensus 48 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~ 126 (183)
.+...|..+|.+++|.|++++|..++...-.. ...+.+..+|..+|.+++|.|+.++|..++.... .......+..+|
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 46678889999999999999999988654332 3467899999999999999999999999987643 334556788999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHH
Q 044644 127 READVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
..+|.+++|.|+.++|..++...
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999999999988654
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.21 E-value=2.2e-10 Score=70.02 Aligned_cols=69 Identities=22% Similarity=0.513 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhC-CCCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 8 DQISEFKEAFSLFD-KDGDG-CITTKELGTVMRS-----LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 8 ~e~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.-+..+..+|..+| .+++| +|+..+++.++.. +|..+++.++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44678999999998 78999 6999999999999 8888999999999999999999999999999888654
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=73.51 Aligned_cols=105 Identities=27% Similarity=0.330 Sum_probs=90.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 044644 48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMI 126 (183)
Q Consensus 48 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~ 126 (183)
+++..|..+|.+++|.|++.++..+++. +........+..++..+|. +.+.|+..+|..+|...- ..-+.+++...|
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3567788899999999999999999984 4455578899999999999 999999999999997753 566789999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHhhH
Q 044644 127 READVDGDGQINYEEFVKVMMAKRRRKR 154 (183)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 154 (183)
+.+|.|++|+|+..++..++........
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~~lge~~~ 126 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLKSLGERLS 126 (160)
T ss_pred HHhCCCCCceecHHHHHHHHHhhcccCC
Confidence 9999999999999999999886654443
No 30
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.19 E-value=6.3e-10 Score=84.46 Aligned_cols=138 Identities=22% Similarity=0.418 Sum_probs=103.7
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCC---------
Q 044644 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT--------- 80 (183)
Q Consensus 11 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~--------- 80 (183)
+.+...|+.+|..++|+|+...+..++... |.+++=..+.. +....+.+|.|.|......+.......
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 457889999999999999999999988765 55554322222 223445677888887766553211000
Q ss_pred --CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 81 --DSEEELKEAFRVFDKDQNGFISAAELRHVMTNL----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 81 --~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
.....+..+|+.+|.|+.|.||.+||+.++.-+ ...++++++..+...+|.|+||.|++.||+..+.-..
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 022345678999999999999999999988543 4678999999999999999999999999999876543
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.6e-10 Score=64.16 Aligned_cols=52 Identities=44% Similarity=0.828 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 97 QNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
.+|.|+.++|..++..+|.. ++++++..++..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888988 99999999999999999999999999999865
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.18 E-value=4.3e-10 Score=69.84 Aligned_cols=70 Identities=27% Similarity=0.469 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 84 EELKEAFRVFDK-DQ-NGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
..+..+|..+|. ++ +|.|+.+|+..++.. ++..++..++..++..+|.+++|.|+|++|+.++.......
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 468889999997 87 699999999999986 45678999999999999999999999999999887655443
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.17 E-value=3.1e-10 Score=70.21 Aligned_cols=68 Identities=21% Similarity=0.405 Sum_probs=58.1
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 84 EELKEAFRVFD-KDQNG-FISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
..+..+|+.|| .|++| .|+.+||+.++... ....++.++..++..+|.|++|.|+|+||+.++.....
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 45778899998 78998 59999999999762 33457889999999999999999999999999877643
No 34
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.16 E-value=7.1e-10 Score=68.59 Aligned_cols=71 Identities=27% Similarity=0.504 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 83 EEELKEAFRVFD-KDQNG-FISAAELRHVMTN-LG----EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 83 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
.+.+..+|..+| .+++| .|+..|++.++.. +| ...++.++..++..+|.|++|.|+|++|+.++......-
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~ 85 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 356889999997 99999 5999999999975 44 346889999999999999999999999999887655443
No 35
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.15 E-value=7.1e-10 Score=84.55 Aligned_cols=136 Identities=18% Similarity=0.339 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHHhhcCCC
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINE----VDADGNGTIDFPEFLNLMARKMKDT 80 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~----~d~~~~g~v~~~ef~~~~~~~~~~~ 80 (183)
++.++-..+...|..+|.+++|.|+.+++..-- ...++...+.++|.. .-...+|+++|++|+.++...-..
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k- 347 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK- 347 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC-
Confidence 456666677788999999999999999996543 235667889999993 334568899999999988765433
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C-CC-CCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-------G-EK-LTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~-~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
.....+..+|+.+|.+++|.|+..|++-+++.. + .. .-+..++.++.-+.....++|++++|..
T Consensus 348 ~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 348 DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 355789999999999999999999999887653 2 12 2345677888888878889999999986
No 36
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.13 E-value=8.9e-10 Score=67.33 Aligned_cols=70 Identities=19% Similarity=0.515 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhCC-CC-CCceeHHHHHHHHHH---cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 7 DDQISEFKEAFSLFDK-DG-DGCITTKELGTVMRS---LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 7 ~~e~~~l~~~f~~~d~-~~-~g~l~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
++.+..+-.+|.+||. ++ +|+|+..||+.++.. +|..++.+++..+++.+|.+++|.|+|++|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3456788899999998 66 899999999999963 6888999999999999999999999999999888654
No 37
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.12 E-value=6.4e-10 Score=64.53 Aligned_cols=62 Identities=32% Similarity=0.500 Sum_probs=56.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 87 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
..+|..+|.+++|.|+.+|+..++...| .+...+..++..++.+++|.|++++|+..+....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999999999886 5888999999999999999999999999876544
No 38
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.11 E-value=9.8e-10 Score=68.51 Aligned_cols=70 Identities=26% Similarity=0.503 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
....+..+|..+|.+++|.|+.+++..++...+ ++..++..++..++.+++|.|++++|+.++.......
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999998875 7889999999999999999999999999887655443
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.08 E-value=1.1e-09 Score=67.25 Aligned_cols=70 Identities=20% Similarity=0.480 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhCC--CCCCceeHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 7 DDQISEFKEAFSLFDK--DGDGCITTKELGTVMRS-LGQN----PTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 7 ~~e~~~l~~~f~~~d~--~~~g~l~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
++++..++.+|..+|. +++|.|+..++..++.. +|.. .+..++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999 89999999999999976 4543 358999999999999999999999999988754
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.08 E-value=1.7e-09 Score=66.36 Aligned_cols=68 Identities=22% Similarity=0.472 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDK--DQNGFISAAELRHVMTN-LGEK----LTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 83 ~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
...+..+|..+|. +++|.|+.+++..++.. .|.+ .+..++..++..++.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3568889999999 89999999999999976 4543 3588999999999999999999999999888653
No 41
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.06 E-value=2.3e-09 Score=66.36 Aligned_cols=69 Identities=20% Similarity=0.435 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhC-CCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 8 DQISEFKEAFSLFD-KDGDG-CITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 8 ~e~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.-+..+..+|..+| .+++| +|+..||+.++... +...+..++..++..+|.+++|.|+|++|+.++..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34568889999999 67898 59999999999762 334577899999999999999999999999998765
No 42
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.06 E-value=2.4e-09 Score=66.21 Aligned_cols=68 Identities=26% Similarity=0.564 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhC-CCCCC-ceeHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 9 QISEFKEAFSLFD-KDGDG-CITTKELGTVMRS-LG----QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 9 e~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
-+..++++|..+| .+++| .|+..++..++.. +| ..++..++..++..+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3467899999997 99999 5999999999975 43 35688999999999999999999999999988754
No 43
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.05 E-value=3.4e-09 Score=64.87 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=57.9
Q ss_pred HHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 84 EELKEAFRV-FDKDQNG-FISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 84 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
..+..+|+. .|.+|+| .|+.+||+.++... +...++.++..++..+|.|++|.|+|+||+.++.....
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 457888998 6788876 99999999999886 33567889999999999999999999999998876543
No 44
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=8.8e-09 Score=68.03 Aligned_cols=104 Identities=29% Similarity=0.377 Sum_probs=88.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHH
Q 044644 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEM 125 (183)
Q Consensus 47 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l 125 (183)
..+...|..++.++.|.|+++++...+..+-..+ ..+++..+...+|.++.|.|+.++|...+.. ++..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 5688999999999999999999976666543333 5678999999999999999999999999755 6666699999999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 126 IREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 126 ~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
|..+|.|++|.||+.+|+........
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhCc
Confidence 99999999999999999987665543
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.04 E-value=2.6e-09 Score=66.29 Aligned_cols=67 Identities=22% Similarity=0.516 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhCC-CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 9 QISEFKEAFSLFDK-DG-DGCITTKELGTVMRS-----LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 9 e~~~l~~~f~~~d~-~~-~g~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
-...++.+|..+|. ++ +|+|+..++..++.. +|..++..++..++..++.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35678999999997 87 699999999999876 566789999999999999999999999999988864
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.04 E-value=3e-09 Score=73.66 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=84.5
Q ss_pred HHHHHHhhCCCCCCc-eeHHHHHHHHHHcCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCc------HH
Q 044644 13 FKEAFSLFDKDGDGC-ITTKELGTVMRSLGQNPTEA-ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS------EE 84 (183)
Q Consensus 13 l~~~f~~~d~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~------~~ 84 (183)
..+++..++.+++|. |+.++|.+.+.......+.. .++-+|+.+|.+++|.|+.+++...+......... ..
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 346788888888887 99999999998887666655 89999999999999999999999998876653322 34
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 044644 85 ELKEAFRVFDKDQNGFISAAELRHVMTNL 113 (183)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (183)
.+..+|..+|.++||.|+.+|+..++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 45678999999999999999999998764
No 47
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.04 E-value=8.8e-09 Score=87.90 Aligned_cols=137 Identities=26% Similarity=0.538 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCC-------HHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPT-------EAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
++.+++.+..+.-+|..||.+++|+++..+|..+|+.+|++++ +..+..++...|.+.+|.|+..+|+.+|..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4678999999999999999999999999999999999998773 346899999999999999999999999976
Q ss_pred hcCCC-CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHH
Q 044644 76 KMKDT-DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD--------GDGQINYEEFVKVM 146 (183)
Q Consensus 76 ~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--------~~g~i~~~ef~~~l 146 (183)
.-... ...+.+..+|+.+|. +..+|+..++.+. ++++++.-++..+.+- ..+.+.|.+|.+.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 53322 134589999999998 7889998887664 6777777666655332 23468999998876
Q ss_pred H
Q 044644 147 M 147 (183)
Q Consensus 147 ~ 147 (183)
+
T Consensus 2397 ~ 2397 (2399)
T KOG0040|consen 2397 F 2397 (2399)
T ss_pred h
Confidence 5
No 48
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.03 E-value=2.7e-09 Score=60.47 Aligned_cols=61 Identities=61% Similarity=1.045 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l 146 (183)
+..+|..+|.+++|.|+..++..++..++.+.+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999998765
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.02 E-value=2.1e-09 Score=59.64 Aligned_cols=52 Identities=38% Similarity=0.695 Sum_probs=48.2
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 24 GDGCITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
++|.|+.++|..++..+|.. ++..++..+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999998753
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=99.02 E-value=7.2e-09 Score=83.88 Aligned_cols=100 Identities=16% Similarity=0.366 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc-CCCCcHH--HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q 044644 46 EAELQDMINEVDADGNGTIDFPEFLNLMARKM-KDTDSEE--ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEV 122 (183)
Q Consensus 46 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 122 (183)
.+++...|..+|.+++|.+ +...+..+- ..+...+ .+..+|..+|.+++|.|+.+||..++..++...+++++
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 3557888999999999986 334444332 1232222 37899999999999999999999999998877889999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 123 DEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 123 ~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
..+|..+|.|++|.|+++||..++...
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999999998873
No 51
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.01 E-value=2.3e-09 Score=68.65 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=54.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
....+..+|..+|.|+||.|+.+|+..+. + ......+..++..+|.|++|.||++||+..+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34668899999999999999999999886 2 35577889999999999999999999999983
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.01 E-value=2.5e-09 Score=61.97 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=55.1
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 14 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
+++|..+|.+++|.|+..++..++..+|. +.+.+..++..++.+++|.|++.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998874 78889999999999999999999999988643
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=98.94 E-value=7e-09 Score=58.80 Aligned_cols=61 Identities=25% Similarity=0.565 Sum_probs=56.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q 044644 88 EAFRVFDKDQNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGD-GQINYEEFVKVMMA 148 (183)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~ef~~~l~~ 148 (183)
.+|..||.++.|.|...++..+|+..+. ..++++++.+...+|.++. |.|+++.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999987 8999999999999999997 99999999998764
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.94 E-value=7.1e-09 Score=58.68 Aligned_cols=61 Identities=57% Similarity=1.008 Sum_probs=55.1
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 73 (183)
+..+|..+|.+++|.|+..++..++..++...+...+..+|..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999998764
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.93 E-value=1.8e-08 Score=61.67 Aligned_cols=70 Identities=27% Similarity=0.475 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHh-hCCCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 7 DDQISEFKEAFSL-FDKDGDG-CITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 7 ~~e~~~l~~~f~~-~d~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
+..+..|..+|.. .|.+++| .|+..||+.++... +...+..++..++..+|.+++|.|+|++|+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4556789999999 6677765 99999999999875 334567889999999999999999999999988654
No 56
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.85 E-value=2.1e-08 Score=61.40 Aligned_cols=66 Identities=20% Similarity=0.477 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 84 EELKEAFRVFDKD--QNGFISAAELRHVMT-NLGEKLT----DEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 84 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
..+..+|..++.. ++|.|+.+||+.++. .++..++ +.++..++..+|.|++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567789999866 478999999999997 4555565 8999999999999999999999999988765
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.85 E-value=4.3e-08 Score=74.52 Aligned_cols=134 Identities=20% Similarity=0.333 Sum_probs=97.3
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCH---HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHH
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTE---AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEA 89 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~---~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (183)
++-.|..+|+..+|.|+..+|..++-......+. ...+++-+.++.. +-.|+++||.+++..+. +...+..+
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~----~l~dfd~A 394 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLN----NLNDFDIA 394 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHh----hhhHHHHH
Confidence 4556888888888999999998876555322222 2355666666554 44699999998887542 33445555
Q ss_pred HHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 044644 90 FRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 152 (183)
...|- ...+.|+..+|+++... .|..+++..++-+|..+|.|+||.++++||+..|.+.-..
T Consensus 395 l~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 395 LRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred HHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 55553 23467999999998766 4788998889999999999999999999999998775443
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.84 E-value=7.3e-08 Score=72.87 Aligned_cols=102 Identities=16% Similarity=0.330 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 044644 46 EAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEM 125 (183)
Q Consensus 46 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l 125 (183)
+..+..+|+.+|.+++|.|+..+....+..+.......+....+|+.+|.|.+|.++.+||++.+. ..+.++-.+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHH
Confidence 455889999999999999999999988776555445778899999999999999999999999986 445678899
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHh
Q 044644 126 IREADVDGDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 126 ~~~~d~~~~g~i~~~ef~~~l~~~~~~ 152 (183)
|..+|.++||.|...|...++.....+
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCc
Confidence 999999999999999999988876544
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.77 E-value=6e-08 Score=62.15 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 044644 46 EAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM 110 (183)
Q Consensus 46 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 110 (183)
...+.-.|..+|.+++|.|+.+|+..+. +. .....+..+|..+|.|+||.||.+||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4556677777777777777777777655 11 134566777777777777777777777776
No 60
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=65.24 Aligned_cols=73 Identities=36% Similarity=0.604 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.|+..+|+.+..+|..||.+.+|+|+..|++.++.++|.+-+.-.++.++...|.+.+|+|+|.+|.-++...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999877653
No 61
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.75 E-value=4.5e-07 Score=69.17 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=104.0
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHc------CC--------CCC-HHHHH--HHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVMRSL------GQ--------NPT-EAELQ--DMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l~~~------~~--------~~~-~~~~~--~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
++-.|..+|.|++|-|+.+||....+-. |. ..+ ...+. .+..-|..++++.+++++|..++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 4567899999999999999997754321 21 011 11222 2333467889999999999999998
Q ss_pred hcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCH--HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 044644 76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTD--EEVDEMIREADVDGDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 76 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~--~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 152 (183)
+ ..+.+..-|..+|+...|.|+..+|..++.... .+... ..+...-+.+..+ +..||++||.++..-....
T Consensus 315 L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l 388 (489)
T KOG2643|consen 315 L-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL 388 (489)
T ss_pred H-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh
Confidence 7 556777789999999999999999999987654 22211 2344555566444 5679999999987765444
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhhhhh
Q 044644 153 KRIEERSSAMENEKEGKKVDGERKRR 178 (183)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (183)
.........+. ..+..++...+|+
T Consensus 389 ~dfd~Al~fy~--~Ag~~i~~~~f~r 412 (489)
T KOG2643|consen 389 NDFDIALRFYH--MAGASIDEKTFQR 412 (489)
T ss_pred hHHHHHHHHHH--HcCCCCCHHHHHH
Confidence 43333332222 2233444444443
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.75 E-value=8e-08 Score=58.80 Aligned_cols=69 Identities=17% Similarity=0.382 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhCCC--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 8 DQISEFKEAFSLFDKD--GDGCITTKELGTVMR-SLGQNPT----EAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 8 ~e~~~l~~~f~~~d~~--~~g~l~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.-+..+..+|..++.. ++|+|+..+|+.++. .++..++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4456788999999865 478999999999996 4555555 8999999999999999999999999988654
No 63
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.73 E-value=3.2e-08 Score=69.99 Aligned_cols=148 Identities=21% Similarity=0.266 Sum_probs=100.5
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHc---CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC--------
Q 044644 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL---GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD-------- 79 (183)
Q Consensus 11 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~-------- 79 (183)
+++..+|.+.|.+.+++|+..++++++..- .+.-+..+.+.-|+..|.+++|.|++++|..-+...-..
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevada 180 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADA 180 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHH
Confidence 578999999999999999999999987543 112233445667888899999999999998544211000
Q ss_pred -----------------------------CC----------------------cHHHHHHHHHhhcCCCCCcccHHHHHH
Q 044644 80 -----------------------------TD----------------------SEEELKEAFRVFDKDQNGFISAAELRH 108 (183)
Q Consensus 80 -----------------------------~~----------------------~~~~~~~~f~~~D~~~~g~i~~~e~~~ 108 (183)
|+ ....+..+.+.+|.|||..+|..+|..
T Consensus 181 irlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFis 260 (362)
T KOG4251|consen 181 IRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFIS 260 (362)
T ss_pred hhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhc
Confidence 00 011234556778999999999999887
Q ss_pred HHHH-----hCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhHHHHh
Q 044644 109 VMTN-----LGEKLTD----EEVDEMIREADVDGDGQINYEEFVKVMMAKRRRKRIEER 158 (183)
Q Consensus 109 ~l~~-----~~~~~~~----~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 158 (183)
.... .|..+.+ .-...+-..+|.|++|.+++++.-.++..........+.
T Consensus 261 lpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~ 319 (362)
T KOG4251|consen 261 LPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEV 319 (362)
T ss_pred CCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHH
Confidence 6422 1222322 223445567899999999999999987766555444443
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.68 E-value=1.5e-07 Score=53.38 Aligned_cols=61 Identities=39% Similarity=0.738 Sum_probs=56.1
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHh
Q 044644 15 EAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGN-GTIDFPEFLNLMAR 75 (183)
Q Consensus 15 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~v~~~ef~~~~~~ 75 (183)
.+|..+|.++.|.|...++...|+.++. .+.+++++.+...+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3688999999999999999999999998 8999999999999999888 99999999998864
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.68 E-value=1.7e-07 Score=64.31 Aligned_cols=66 Identities=32% Similarity=0.642 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
..+..+|+.||.+.||+|+..|++.+++++|.+-+.--+..++..+|.|.+|+|+|-+|+-++...
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 567889999999999999999999999999988888889999999999999999999999766543
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.65 E-value=4.6e-07 Score=55.07 Aligned_cols=67 Identities=16% Similarity=0.399 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
..+..+|..|. .+.+.++..||+.++..- ....++..++.+++.+|.|+||.|+|.||+.++.....
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 44677888887 446799999999999662 34457889999999999999999999999998877543
No 67
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.64 E-value=2e-07 Score=58.58 Aligned_cols=69 Identities=25% Similarity=0.413 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
.++++|..++..+|..++. ++|.|+..+...++...+ ++...+..||...|.+++|.++++||+..|..
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 5788999999999999985 589999999999998875 67899999999999999999999999988864
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.44 E-value=2e-06 Score=54.00 Aligned_cols=67 Identities=27% Similarity=0.524 Sum_probs=58.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
.....+..+|...|+ ++|.|+.++.+.++...+ ++.+.+..+|...|.+++|+++++||+-.|.-..
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 356788999999985 689999999999999887 8999999999999999999999999998877553
No 69
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.44 E-value=4.3e-06 Score=50.86 Aligned_cols=68 Identities=15% Similarity=0.362 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 8 ~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.-+..+-.+|..|. .+.+.|+..||+.++..- +....+..+..++..+|.+++|.|+|.||+.++..+
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34567788999997 446799999999988542 334467789999999999999999999999988754
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.40 E-value=6.1e-07 Score=42.75 Aligned_cols=23 Identities=52% Similarity=0.821 Sum_probs=10.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHH
Q 044644 88 EAFRVFDKDQNGFISAAELRHVM 110 (183)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l 110 (183)
.+|+.+|.|++|.|+.+||..++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH
Confidence 34444444444444444444443
No 71
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.40 E-value=2.1e-05 Score=61.30 Aligned_cols=139 Identities=15% Similarity=0.268 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCceeHHHHHHHH-HHcCCCCCHHHHHHHHH-hhCCCCCCcccHHHHHHHHHhhcCCCCcHH
Q 044644 7 DDQISEFKEAFSLFDKDGDGCITTKELGTVM-RSLGQNPTEAELQDMIN-EVDADGNGTIDFPEFLNLMARKMKDTDSEE 84 (183)
Q Consensus 7 ~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l-~~~~~~~~~~~~~~l~~-~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~ 84 (183)
++|++.+--.|...+.++..+++.++|.+.. .-++.......+.++.. ..|...+|-|+|.||+.+-..++. +..
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~---pDa 108 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA---PDA 108 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC---chH
Confidence 4444444444555567888899999997753 33344444445544444 446678899999999998877664 456
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGE------KLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
.+..+|..+|+.+.|.+|.+++.+++.+... +.+.+-+...| ..+....++|.+|..++.....
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~~ 178 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQL 178 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHHH
Confidence 7889999999999999999999999977542 23333344433 3334556888888887766443
No 72
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.40 E-value=2.4e-06 Score=55.37 Aligned_cols=73 Identities=29% Similarity=0.507 Sum_probs=63.9
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHHHHh
Q 044644 80 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD--GDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~l~~~~~~ 152 (183)
++..++++.+|..||..+||.|+..+.-.+++.+|.+++++++.+.+...+.+ .-..|+|++|+.++......
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 34558899999999999999999999999999999999999999999999887 45689999999987765443
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.39 E-value=6.5e-07 Score=42.66 Aligned_cols=28 Identities=50% Similarity=0.857 Sum_probs=25.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 121 EVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 121 ~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
++..+|..+|+|++|.|+++||+..+..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4788999999999999999999998764
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.38 E-value=8.7e-07 Score=65.24 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=93.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 044644 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (183)
Q Consensus 47 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 126 (183)
..+..+|..||.+++|.++|.+....+..++..+.....+..+|+.|+.+-||.+...++..+|+... .+..-.+.-+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 45678999999999999999999999998888888888999999999999999999999999886642 24444567789
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHhhHHHH
Q 044644 127 READVDGDGQINYEEFVKVMMAKRRRKRIEE 157 (183)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~ 157 (183)
..++...+|+|++.+|..+............
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~~ 368 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATEPNLALSEL 368 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhCchhhhhhh
Confidence 9999999999999999999887766654444
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.1e-05 Score=64.17 Aligned_cols=142 Identities=23% Similarity=0.416 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc------
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM------ 77 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~------ 77 (183)
.++.+|..+..+.|..+. .+.|+|+..+-++++-..| +....+..||...|.+.+|+++..+|.-.|....
T Consensus 9 avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 357788888888888884 4679999999999877765 5567789999999999999999999997762100
Q ss_pred --------------------------------------------------------------------CC----------
Q 044644 78 --------------------------------------------------------------------KD---------- 79 (183)
Q Consensus 78 --------------------------------------------------------------------~~---------- 79 (183)
..
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence 00
Q ss_pred ----------C---------------CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC
Q 044644 80 ----------T---------------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGD 134 (183)
Q Consensus 80 ----------~---------------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~ 134 (183)
+ ...-.+..+|..+|....|++|-..-+.+|...+ ++...+..++..-|.|+|
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D 243 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD 243 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC
Confidence 0 0123467889999999999999999999998876 888889999999999999
Q ss_pred CcccHHHHHHHHHHHH
Q 044644 135 GQINYEEFVKVMMAKR 150 (183)
Q Consensus 135 g~i~~~ef~~~l~~~~ 150 (183)
|.++-+||+-.|.-..
T Consensus 244 GkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 244 GKLSADEFILAMHLIE 259 (1118)
T ss_pred CcccHHHHHHHHHHHH
Confidence 9999999997776543
No 76
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.32 E-value=1.8e-05 Score=64.52 Aligned_cols=140 Identities=16% Similarity=0.314 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHH
Q 044644 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEE 85 (183)
Q Consensus 6 ~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~ 85 (183)
.......+..+|...|.+++|.++..+...++..+...+....+..+|+..+..+++.+...+|..+.......+ .
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp----e 206 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP----E 206 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----h
Confidence 344556788899999999999999999999999999999999999999999999999999999999887665433 6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHHH
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~l~~~~ 150 (183)
+..+|..+-.+ .++++.+++..++.... ...+.+.+..++..+... ..+.++++.|..||.+..
T Consensus 207 v~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 207 VYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 88888888544 89999999999998764 457778888888777443 355799999999998754
No 77
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.30 E-value=1.6e-05 Score=61.38 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=104.8
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHH--HHHHc------------CCCCCHHHHHHH---HHhhCCCCCCcccHHHHHHHHH
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGT--VMRSL------------GQNPTEAELQDM---INEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~--~l~~~------------~~~~~~~~~~~l---~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
.+.++|..+++.+.|.|+..++.. ++..+ +...+.+....+ |..+|.+++|.|+-++...+..
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 578899999999999999998855 33322 122344444444 8888999999999999876654
Q ss_pred hhcCCCCcHHHHHHHHH----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 75 RKMKDTDSEEELKEAFR----VFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 75 ~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
.-+ ...-+.++|. ..-.-.+|.|+..+|..++-.....-++..++.+|+.+|.+++|.++..+...+.....
T Consensus 306 ~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 306 HTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred cch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHH
Confidence 322 2345778887 34566889999999999998888788889999999999999999999999887665544
Q ss_pred Hh
Q 044644 151 RR 152 (183)
Q Consensus 151 ~~ 152 (183)
..
T Consensus 382 ~r 383 (493)
T KOG2562|consen 382 QR 383 (493)
T ss_pred HH
Confidence 33
No 78
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.29 E-value=5.9e-06 Score=54.53 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=43.7
Q ss_pred CCceeHHHHHHHHH-HcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccH
Q 044644 25 DGCITTKELGTVMR-SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISA 103 (183)
Q Consensus 25 ~g~l~~~e~~~~l~-~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 103 (183)
.|.|+...|..+.. .+...-+++.|...|..||.++.|.|.-+.+..++...- ..-..+++..+|+.+-++..|.++.
T Consensus 78 ~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~dy 156 (171)
T KOG0031|consen 78 PGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFDY 156 (171)
T ss_pred CCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCceeH
Confidence 45555555544432 233333445555555555555555555555555554422 2224455555555555555555555
Q ss_pred HHHHHHHH
Q 044644 104 AELRHVMT 111 (183)
Q Consensus 104 ~e~~~~l~ 111 (183)
..|..++.
T Consensus 157 ~~~~~~it 164 (171)
T KOG0031|consen 157 KAFTYIIT 164 (171)
T ss_pred HHHHHHHH
Confidence 55555553
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.26 E-value=6.4e-06 Score=44.14 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=40.4
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 27 CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 27 ~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
+++..|+..+|+.+++.+++..+..+|+.+|.+++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999888653
No 80
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.25 E-value=7.9e-06 Score=53.47 Aligned_cols=100 Identities=21% Similarity=0.356 Sum_probs=78.3
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHH----HH
Q 044644 14 KEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL----KE 88 (183)
Q Consensus 14 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~----~~ 88 (183)
+++...+..+|.|.++.++|..+++.+. ..+..-.+...|+-+|-++++.|...+....+..+....-..+++ ..
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 3566777889999999999999877653 345556678888899999999999999998887766544344444 44
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh
Q 044644 89 AFRVFDKDQNGFISAAELRHVMTNL 113 (183)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (183)
+...-|.||||.++..||..++...
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 5666799999999999999988654
No 81
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.22 E-value=3.2e-06 Score=41.01 Aligned_cols=30 Identities=57% Similarity=1.014 Sum_probs=25.2
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH-HcC
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGTVMR-SLG 41 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~~l~-~~~ 41 (183)
+++.+|..+|.+++|+|+.+||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468899999999999999999999998 564
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.22 E-value=2.7e-06 Score=41.27 Aligned_cols=29 Identities=55% Similarity=1.025 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMT-NLG 114 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 114 (183)
+..+|+.+|.|++|.|+.+||..++. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 443
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.08 E-value=2.3e-05 Score=60.61 Aligned_cols=55 Identities=31% Similarity=0.463 Sum_probs=48.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
....+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456778899999999999999999942 5788999999999999999999987654
No 84
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.07 E-value=2.5e-05 Score=55.60 Aligned_cols=97 Identities=22% Similarity=0.493 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCC--------cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH
Q 044644 49 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE 120 (183)
Q Consensus 49 ~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~--------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~ 120 (183)
++.|...+|.+++..++..+|+........... .....+..-..+|.|+||.+|.+|+..++...+...+-.
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~aln 317 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALN 317 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHH
Confidence 467777788888888888888865433221110 123445556778999999999999999987776667777
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHH
Q 044644 121 EVDEMIREADVDGDGQINYEEFVKV 145 (183)
Q Consensus 121 ~~~~l~~~~d~~~~g~i~~~ef~~~ 145 (183)
++..++...|.|++..++.++.+..
T Consensus 318 e~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 318 EVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHhhhccCCCcccCHHHHHHH
Confidence 8888888999999999999988754
No 85
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.01 E-value=4.2e-05 Score=59.99 Aligned_cols=74 Identities=28% Similarity=0.549 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN---PTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 2 ~~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
...|+.+|+..+...|..+| +++|+++..++..++.+.+.. ...++++.++...+.+.+|.|+|++|+..+..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 46789999999999999999 999999999999999887654 357889999999999999999999999976543
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.00 E-value=1e-05 Score=37.06 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=11.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHH
Q 044644 88 EAFRVFDKDQNGFISAAELRHV 109 (183)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~ 109 (183)
.+|+.+|.|++|.|+.+|+.++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHH
Confidence 3455555555555555555543
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.00 E-value=2.8e-06 Score=54.35 Aligned_cols=61 Identities=21% Similarity=0.439 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
....+...|..+|.|+||.|+..|+..+...+ ...+..+..++...|.|+||.||+.||..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 45677888999999999999999999886544 45666789999999999999999999975
No 88
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.99 E-value=1.5e-05 Score=69.07 Aligned_cols=70 Identities=24% Similarity=0.557 Sum_probs=61.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-------TDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
.++..+|+.||.+.+|.++..+|+.+|+.+|+.+ ++..+..++..+|++.+|+|+..+|++||.+++...
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc
Confidence 4577889999999999999999999999999755 234799999999999999999999999999987544
No 89
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.98 E-value=0.00016 Score=56.57 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC-CCCCCcccHHHHHHH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD-VDGDGQINYEEFVKV 145 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d-~~~~g~i~~~ef~~~ 145 (183)
+.-..+|+..|..++|.||.=+|..++......+....++..+-... .+...++|+..|..+
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 44677899999999999999999999988777777777777666653 344456777766543
No 90
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.97 E-value=6.4e-05 Score=40.32 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
++..|++.+++.++..+++..+..+|..+|..++|.+.-+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67788899998888888888888899999999999999888888765
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.82 E-value=4.2e-05 Score=34.99 Aligned_cols=24 Identities=46% Similarity=0.808 Sum_probs=16.3
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHH
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTV 36 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~ 36 (183)
++..|..+|.+++|.|+..||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345677777777777777777654
No 92
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.82 E-value=0.00011 Score=56.65 Aligned_cols=68 Identities=26% Similarity=0.417 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHH---hhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 044644 45 TEAELQDMINEVDADGNGTIDFPEFLNLMA---RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 112 (183)
Q Consensus 45 ~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~---~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (183)
..+.+..+|+.+|.+++|.|+.+||...+. .+++.+-...++-.+-+.+|.|+||.|+..||-.++.=
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 345567778888888888888888877554 34455556677777788888888888887777776643
No 93
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.77 E-value=0.00018 Score=55.84 Aligned_cols=59 Identities=25% Similarity=0.413 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 044644 41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 113 (183)
Q Consensus 41 ~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (183)
|.......+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5566678889999999999999999999942 4678999999999999999999998653
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.54 E-value=0.0012 Score=52.97 Aligned_cols=146 Identities=21% Similarity=0.319 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHH-HHHcCCCCCHHHHHHHHHhhCCCC-----CCcccHHHHHHHHHh
Q 044644 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTV-MRSLGQNPTEAELQDMINEVDADG-----NGTIDFPEFLNLMAR 75 (183)
Q Consensus 2 ~~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~~l~~~~d~~~-----~g~v~~~ef~~~~~~ 75 (183)
+.++.+..++.|.++|...|.+.+|.++-.|+..+ ..+++..+...++..+-......- ++.++..-|+.+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 45678889999999999999999999999999775 455677777766655544443221 233455555543211
Q ss_pred hcCC---------------------------C--------------CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 044644 76 KMKD---------------------------T--------------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG 114 (183)
Q Consensus 76 ~~~~---------------------------~--------------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 114 (183)
.... + .-.+.+..+|..+|.|+||.++-.|+..++...+
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 1000 0 0124456789999999999999999999998876
Q ss_pred CCC-CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 115 EKL-TDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 115 ~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
... ...- .-..-..+..|.++|..|++.|.-..
T Consensus 346 ~~pW~~~~---~~~~t~~~~~G~ltl~g~l~~WsL~T 379 (625)
T KOG1707|consen 346 GSPWTSSP---YKDSTVKNERGWLTLNGFLSQWSLMT 379 (625)
T ss_pred CCCCCCCc---ccccceecccceeehhhHHHHHHHHh
Confidence 322 0000 00111233678999999998876543
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.48 E-value=4.9e-05 Score=48.64 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 044644 43 NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRH 108 (183)
Q Consensus 43 ~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 108 (183)
..-...+.-.|..+|.+++|.|+..|+..+...+. .....+...|..+|.|+||.||..|...
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 44566677888889999999999888887766442 2445688889999999999999888754
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.38 E-value=0.00051 Score=41.39 Aligned_cols=64 Identities=30% Similarity=0.641 Sum_probs=50.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHHH
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMTNL-GE-KLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~l~~~~ 150 (183)
+..+|..+.. +.+.||.++|..+|..- +. ..+.+.+..++..+..+ ..+.+++++|..+|.+..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 5678888855 78899999999999664 43 46888999999888655 478999999999998643
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.36 E-value=0.0013 Score=51.97 Aligned_cols=70 Identities=33% Similarity=0.632 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRKR 154 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 154 (183)
..+.+.|...| ++.|+|+..++..++.+.+.. ...++++.++...+.|.+|.|+|++|+..+.+...+..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~~ 91 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKDI 91 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhhh
Confidence 35677799999 999999999999999987643 45789999999999999999999999998887766653
No 98
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.36 E-value=0.0011 Score=49.28 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhCCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHH
Q 044644 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELK 87 (183)
Q Consensus 9 e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~ 87 (183)
....++..|..+|.+++|.++..+--..+.-+ +-..+...++..|+.|+...+|.+.-.+|..++.....-+ .-.+.
T Consensus 257 vsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~ 334 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVP 334 (412)
T ss_pred hhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeecc
Confidence 33678899999999999999988877766666 4456778899999999999999999988888876544322 22467
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhC
Q 044644 88 EAFRVFDKDQNGFISAAELRHVMTNLG 114 (183)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~ 114 (183)
.+|+..+...+|+|+.++|+.+....+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCc
Confidence 789999999999999999999986543
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.11 E-value=0.01 Score=40.42 Aligned_cols=136 Identities=19% Similarity=0.162 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHHhhc----------
Q 044644 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD---GNGTIDFPEFLNLMARKM---------- 77 (183)
Q Consensus 11 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~g~v~~~ef~~~~~~~~---------- 77 (183)
..|++=..-+|.|++|.|..-|-...++.+|+++-.+.+..++-..... ..+-+.---|.-.+.+..
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3455666678999999999999999999999887665544443222111 011110000000000000
Q ss_pred ---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 78 ---KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE-------KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 78 ---~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
...-..+.+..+|..++..+.+.+|..|+..++..... .-+.-|...++..+ .+++|.+.-++-.....
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 00113578999999999888899999999999977432 22334555566555 78899999888776543
No 100
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.004 Score=39.30 Aligned_cols=59 Identities=34% Similarity=0.623 Sum_probs=43.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh------C---CC-CCHHHH----HHHHHhhCCCCCCcccHHHHHHH
Q 044644 87 KEAFRVFDKDQNGFISAAELRHVMTNL------G---EK-LTDEEV----DEMIREADVDGDGQINYEEFVKV 145 (183)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~------~---~~-~~~~~~----~~l~~~~d~~~~g~i~~~ef~~~ 145 (183)
-..|...|.|+++.|+--|+..++... | .+ .++.++ +.+++.-|.|+||.|+|-||+..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 345888899999999999998888553 2 12 344454 44556678899999999999864
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.85 E-value=0.0019 Score=29.58 Aligned_cols=25 Identities=44% Similarity=0.781 Sum_probs=14.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 123 DEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 123 ~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
..+|+.+|.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555556666666555543
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.75 E-value=0.0065 Score=36.50 Aligned_cols=63 Identities=16% Similarity=0.383 Sum_probs=48.1
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHhh
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQ--NPTEAELQDMINEVDAD----GNGTIDFPEFLNLMARK 76 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~~~ 76 (183)
+..+|..+.. +.+.|+.++|..+|..-.. ..+...+..++..+..+ ..+.++++.|..++.+.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5678888855 6889999999999876633 35788888888887544 35778888888888653
No 103
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.012 Score=37.18 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHc
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL 40 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~ 40 (183)
.+++++++- ..|...|.+++|.|+--|+..++...
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~ 96 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHT 96 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHH
Confidence 345555432 45777788888888888887766543
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.68 E-value=0.0044 Score=28.24 Aligned_cols=27 Identities=52% Similarity=0.896 Sum_probs=18.1
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHH
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVMRS 39 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l~~ 39 (183)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777666543
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.007 Score=47.72 Aligned_cols=64 Identities=30% Similarity=0.467 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
.+.+..-|+.+-+|-.|.|+-.--+.++.+.. +.-.++.+||...|.+.||.+++.||++.+.-
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 45667779999999999999999999998875 77788999999999999999999999998754
No 106
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.45 E-value=0.1 Score=44.36 Aligned_cols=121 Identities=14% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhc
Q 044644 22 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG-------NGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFD 94 (183)
Q Consensus 22 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 94 (183)
.+..|.|....+...... +-.+..+...+..+.... ....+++.|..++..++.. .++..+|..+.
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----PEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----hhHHHHHHHhc
Confidence 455777777766554433 222344444444443221 1235678888888877643 57999999999
Q ss_pred CCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHHHHH
Q 044644 95 KDQNGFISAAELRHVMTNL----------GEKLTDEEVDEMIREADVDG----DGQINYEEFVKVMMAK 149 (183)
Q Consensus 95 ~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~l~~~~d~~~----~g~i~~~ef~~~l~~~ 149 (183)
.++..++|.+++..++..- ..+..+..+..++..+..|. .|.++-+.|+.+++.-
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 8888999999999999552 24578889999999997774 7899999999999873
No 107
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.0047 Score=52.76 Aligned_cols=143 Identities=20% Similarity=0.345 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc---C---
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM---K--- 78 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~---~--- 78 (183)
++.++..++..+|..+... +|.++....+-+|... .+....+-++|...|.+.+|.+++.+|...|.... .
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 5778888999999998765 7888888887777665 35566677899999999999999999997663110 0
Q ss_pred ------------------------------------------------------------------------------CC
Q 044644 79 ------------------------------------------------------------------------------DT 80 (183)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (183)
.+
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence 01
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 044644 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 152 (183)
.....+..+|...|.+.+|.|+..+....+...| +....+...+...+.+..|.+++++|+-.+......
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 1234567789999999999999999999987755 888899999999999999999999998877766555
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=96.26 E-value=0.061 Score=44.20 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=62.4
Q ss_pred CCCcccHHHHHHHHHhhc-CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhC------
Q 044644 60 GNGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-E-KLTDEEVDEMIREAD------ 130 (183)
Q Consensus 60 ~~g~v~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~l~~~~d------ 130 (183)
+.|.++|++|..+...+. .......++..+|..+-. +.+.|+.++|..+|.... . ..+.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357899999988877553 222356789999999854 446899999999997743 2 356666666665431
Q ss_pred -CCCCCcccHHHHHHHHHHH
Q 044644 131 -VDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 131 -~~~~g~i~~~ef~~~l~~~ 149 (183)
....+.+++++|..+|.+.
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 1123468999999999864
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.025 Score=44.74 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.+++++..-+..-|+.+-.+-.|.|+..--++++.+. .+.-.++..||...|.+.+|.++..||+..+...
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4678888888899999999999999988888888775 4667889999999999999999999999988654
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.012 Score=48.80 Aligned_cols=65 Identities=20% Similarity=0.419 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 8 ~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
...-++++.|..+|+...|+|+..+-+.+|...+ ++.-.+..||...|++++|.++.++|+-.|.
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3445789999999999999999999999887765 5677789999999999999999999997664
No 111
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.98 E-value=0.023 Score=45.73 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK 78 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~ 78 (183)
.++++++..++..|..+|.++.|+++..+....+...+...+....+.+....+.+-+|.+...+|.+++.....
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999988899999999999999888999999999999876543
No 112
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.83 E-value=0.18 Score=30.78 Aligned_cols=66 Identities=17% Similarity=0.381 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNL-------GE----KLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~ 152 (183)
++++.+|+.+ .|++|.++...+..++... |+ .-.+..+..+|... .....|+.++|+.++..-++.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 5788889999 6788999999888888553 21 22677788888887 355679999999998876443
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.57 E-value=0.029 Score=42.38 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
.-...+-.+|..+|.|.||.++..|+..+.. .-.+..+..+|...|...||.|+-.||+..+...
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 3467889999999999999999999998853 3667789999999999999999999999876543
No 114
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.55 E-value=0.27 Score=42.11 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCH-HH----HHHHHHhhCCCCCCcccHHHHHHHHHhhcCC
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTE-AE----LQDMINEVDADGNGTIDFPEFLNLMARKMKD 79 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~-~~----~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~ 79 (183)
.++.....++..|..+++...|.++.+++..+|-.+|...-. +. +.++....+...-|.|++.+|...|......
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 355666789999999999989999999999999999987764 22 3333333344444789999999999876666
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 044644 80 TDSEEELKEAFRVFDKDQNGFISAAELRH 108 (183)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 108 (183)
......+...|+.+-.++. +|..+++..
T Consensus 821 l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 LDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6667777888888755443 577777776
No 115
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.55 E-value=0.11 Score=43.89 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=91.2
Q ss_pred CCHHHH-HHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHH-HHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCc
Q 044644 5 LTDDQI-SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAE-LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (183)
Q Consensus 5 l~~~e~-~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~ 82 (183)
.++..| +.+++.+..+|......++..++..+|.......+... ...-|... ....+.++|++|..+...++.....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccch
Confidence 455666 46677888888777778999999998887766555433 32333332 2345679999999998877654322
Q ss_pred HHHHH--H--HHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCC-----CCCcccHHHHHHHHHHHH
Q 044644 83 EEELK--E--AFRVFDKDQNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADVD-----GDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 83 ~~~~~--~--~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~-----~~g~i~~~ef~~~l~~~~ 150 (183)
..... . +...-+...-.+++.++|.++|..-... .....++.++..+-.| ...++.+.||+.++.+.+
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhcc
Confidence 21111 1 2222233344689999999998552211 1122455555555333 355899999999998764
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.30 E-value=0.037 Score=49.14 Aligned_cols=58 Identities=28% Similarity=0.539 Sum_probs=51.4
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 89 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
.|+.+|+||.|.|+..+|..+++... ..++++++-+++....|.+...+|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 47889999999999999999997764 57889999999999999999999999997653
No 117
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.12 E-value=0.018 Score=43.17 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
.+..-|.++|.|+.+.|...|++.+=.-+- ..-.......+++-.|.|+|..|+++||...|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 455557777777777777766544422211 1233445666777777777777777777776654
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.09 E-value=0.26 Score=40.50 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhh-----------CCCC---CCceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHH
Q 044644 4 QLTDDQISEFKEAFSLF-----------DKDG---DGCITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPE 68 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~-----------d~~~---~g~l~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~v~~~e 68 (183)
.|+.+++..+..+|..- |++- ..+++...|..+...+. +..+..-+.++|...|.+++|.++|.+
T Consensus 497 ~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~ 576 (671)
T KOG4347|consen 497 SLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKD 576 (671)
T ss_pred ccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHH
Confidence 46677777777777432 1111 11344555555555542 334455578999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHH
Q 044644 69 FLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAEL 106 (183)
Q Consensus 69 f~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 106 (183)
++..+..+.... ..+.+..+|+.+|++++ ....++.
T Consensus 577 lv~gL~~l~~~~-~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 577 LVSGLSILKAGD-ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHhhccCCcc-ccccccc
Confidence 999887665433 55778889999999999 8888888
No 119
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.79 E-value=0.41 Score=32.43 Aligned_cols=64 Identities=22% Similarity=0.469 Sum_probs=48.4
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 90 FRVFDKDQNGFISAAELRHVMTNLG---EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
|..+-..+...|+...|..+|...+ ..++...++.+|..+.......|+|++|..+|.......
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 3333455667899999999999865 468999999999998777777899999999988765544
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.66 E-value=0.47 Score=39.76 Aligned_cols=99 Identities=19% Similarity=0.318 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 044644 46 EAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEM 125 (183)
Q Consensus 46 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l 125 (183)
...+..+|...|++.+|.+++.+-..+...+.. .-........|+..+..+++.+...++..+....+... ++..+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 455889999999999999999998887764322 22456678888888999999999999999987765322 67777
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHH
Q 044644 126 IREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 126 ~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
|..+-.+ .+.++.++++.++...
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHh
Confidence 7777443 7788888888877665
No 121
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.65 E-value=0.096 Score=39.67 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHH
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLG---QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKE 88 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~ 88 (183)
+|+..|..+=.+.++......+...-..+. ..+=...+-=||..+|.+.++.++..|...+.... .+..++.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHH
Confidence 456666665444444333333333222221 12234567889999999999999999988877654 6678999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhC
Q 044644 89 AFRVFDKDQNGFISAAELRHVMTNLG 114 (183)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~~ 114 (183)
+|..+|...||.|+..|....+...+
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCC
Confidence 99999999999999999999987766
No 122
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.95 E-value=0.7 Score=31.29 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=47.2
Q ss_pred HHHHHhh---CCCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 14 KEAFSLF---DKDGDGCITTKELGTVMRSLGQ---NPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 14 ~~~f~~~---d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
+.+|..| ...+...++...|..+++..++ .++...+..+|..+...+...|+|++|..++..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455554 3455678999999999988754 5788999999999877777789999999888643
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.55 E-value=0.15 Score=41.84 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=54.3
Q ss_pred cHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 044644 65 DFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142 (183)
Q Consensus 65 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef 142 (183)
+++.|...+....+-+....-...+|+.+|.+++|.|+..++...+..+...-..+.+.-++..++.+.+ ....++-
T Consensus 536 ~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 536 DYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3444444444333322233456788999999999999999999999888766666777888888888877 6555554
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.47 E-value=0.23 Score=40.28 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
....-|..+|.++.|.++.+++.+.+...+.+.+.+....++...+.+-+|.+...+|..++.....-.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 345668999999999999999999999998889999999999999999999999999999877655433
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.42 E-value=0.059 Score=31.11 Aligned_cols=56 Identities=25% Similarity=0.487 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG-------DGQINYEEFVKVM 146 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~g~i~~~ef~~~l 146 (183)
.+.+...|+.+ .++.++||..|+++.+ +++.++.+...+..-. .|.++|..|+.-+
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 47789999999 7888999999999984 3333455555542222 3678888887543
No 126
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.97 E-value=0.3 Score=36.58 Aligned_cols=61 Identities=23% Similarity=0.417 Sum_probs=34.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCH-----------HHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 89 AFRVFDKDQNGFISAAELRHVMTNL-----GEKLTD-----------EEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~-----------~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
.|...|.|+||+++..++..++..- ...-.+ ..-..+++.+|+|.|..|++++|++.-.+.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 4556666777777777666665331 110000 012345677777777777777777654443
No 127
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=0.14 Score=44.07 Aligned_cols=145 Identities=21% Similarity=0.343 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC----
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD---- 79 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~---- 79 (183)
.++..+-..+..+|..+|..+.|.|+..+-..++...| +....+-.+|...+..+.|.++...|...++.....
T Consensus 4 ~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~ 81 (847)
T KOG0998|consen 4 GLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGR 81 (847)
T ss_pred CCCCCccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhccc
Confidence 34444446778899999999999999999988887765 567778888988888888889988888765311000
Q ss_pred -------------------------------------------CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 044644 80 -------------------------------------------TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116 (183)
Q Consensus 80 -------------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 116 (183)
....-.+..+|+.+.+. .|.++.+..+.++....
T Consensus 82 ~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~-- 158 (847)
T KOG0998|consen 82 ELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK-- 158 (847)
T ss_pred CcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--
Confidence 00123456668888665 78888888888876654
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhh
Q 044644 117 LTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRK 153 (183)
Q Consensus 117 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 153 (183)
+....+..++...|.+.+|.++..+|...+.......
T Consensus 159 Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 159 LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred CChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 7778888999999999999999999998776544433
No 128
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.60 E-value=0.11 Score=39.17 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 044644 48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 112 (183)
Q Consensus 48 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (183)
.+.--|..+|++.++.|+-.|+.-+-..+..........+.+|+.+|.|+|..||.+|+...+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 35556888899999999988888777776666667888999999999999999999999988754
No 129
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.26 E-value=0.93 Score=31.13 Aligned_cols=36 Identities=11% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 116 KLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 116 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
.+.++.++++|..++....+.+++.|...++..++.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 357788999999999888889999999998887543
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=90.65 E-value=4.7 Score=33.62 Aligned_cols=87 Identities=9% Similarity=0.164 Sum_probs=59.3
Q ss_pred CCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCC-CcHHHHHHHHHhh-------
Q 044644 24 GDGCITTKELGTVMRSLGQ--NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-DSEEELKEAFRVF------- 93 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~------- 93 (183)
+.|.+++++|..+.+.+.. .....++..+|..+..++ +.++.++|..++...-... ...+....++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988887743 347899999999996544 6899999999997653322 1223333333322
Q ss_pred cCCCCCcccHHHHHHHHH
Q 044644 94 DKDQNGFISAAELRHVMT 111 (183)
Q Consensus 94 D~~~~g~i~~~e~~~~l~ 111 (183)
...+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 112334588999999885
No 131
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=89.45 E-value=0.39 Score=30.55 Aligned_cols=33 Identities=33% Similarity=0.670 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 117 LTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 117 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
+++++++.++..+-.|..|.|.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 789999999999999999999999999876643
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.08 E-value=1.9 Score=26.78 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=49.8
Q ss_pred CCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCccc
Q 044644 25 DGCITTKELGTVMRSL--GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFIS 102 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 102 (183)
||.++..|...+-..+ .+.++..+...+...+........++.+|...+............+..+|+..- .||.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCCC
Confidence 6788888776654432 124567777777777766555667888888877654422222333445555553 456677
Q ss_pred HHHHHHH
Q 044644 103 AAELRHV 109 (183)
Q Consensus 103 ~~e~~~~ 109 (183)
..|-.-+
T Consensus 91 ~~E~~~l 97 (104)
T cd07313 91 EYEEHLI 97 (104)
T ss_pred HHHHHHH
Confidence 6665443
No 133
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.29 E-value=4.2 Score=24.86 Aligned_cols=63 Identities=22% Similarity=0.506 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHc-------C----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 044644 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL-------G----QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (183)
Q Consensus 11 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 76 (183)
.+++-+|..+ .+.+|.++...|..+|..+ | +...+..++..|.... ....|+...|+.++...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 5788899988 6778999999998887653 2 1225666777777652 34568888888888654
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=86.65 E-value=4.2 Score=33.64 Aligned_cols=66 Identities=17% Similarity=0.356 Sum_probs=46.2
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-E-KLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAK 149 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~l~~~ 149 (183)
..+++..+|..+-. ++.++.++|..+|.... . ..+.+.+..++..+... ..|.++.++|..+|.+.
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 45678888887753 35788888888887643 2 24556677777777543 24679999999999864
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=86.30 E-value=3.1 Score=34.47 Aligned_cols=65 Identities=20% Similarity=0.430 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLG-E-KLTDEEVDEMIREADV-DGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~l~~~ 149 (183)
...+..+|..+.. .+.++.++|..+|.... . ..+.+.+..++..+.. ...+.++++.|..||.+.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 3578888888853 46899999999887743 2 3466677777777532 235679999999999863
No 136
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.01 E-value=15 Score=31.45 Aligned_cols=156 Identities=14% Similarity=0.136 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhCCCC-CCceeHHHHHHHHHH--------cCCCCC-----HHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 10 ISEFKEAFSLFDKDG-DGCITTKELGTVMRS--------LGQNPT-----EAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 10 ~~~l~~~f~~~d~~~-~g~l~~~e~~~~l~~--------~~~~~~-----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
++-+.++|..++..+ +..++..+...+|.. .|.-+. +--++-+++.||...+|.|..-+|...+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 344567777776553 444555555444322 232221 222577888999999999998888887776
Q ss_pred hcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH-------HHh------CCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 044644 76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-------TNL------GEKLTDEEVDEMIREADVDGDGQINYEEF 142 (183)
Q Consensus 76 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l-------~~~------~~~~~~~~~~~l~~~~d~~~~g~i~~~ef 142 (183)
++... ..+.+..+|...-.++.- +....|..++ +.+ |..--+..+..+|.. .++-..|++..|
T Consensus 499 lck~~-leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~--v~~~pei~~~~f 574 (966)
T KOG4286|consen 499 LCKAH-LEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQF--VNNKPEIEAALF 574 (966)
T ss_pred Hhcch-hHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHh--cCCCCcchHHHH
Confidence 65544 667888999998544333 2244444443 333 322233456777773 456668999999
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhhhhh
Q 044644 143 VKVMMAKRRRKRIEERSSAMENEKEGK 169 (183)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (183)
+.++...++.....-...++......+
T Consensus 575 ~dw~~~epqsmVwL~vlhRv~~aE~~k 601 (966)
T KOG4286|consen 575 LDWMRLEPQSMVWLPVLHRVAAAETAK 601 (966)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHHH
Confidence 998877776666666666655544444
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=85.68 E-value=2.1 Score=28.38 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred CCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcC
Q 044644 60 GNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDK 95 (183)
Q Consensus 60 ~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~ 95 (183)
..+.|+|+.|..+|...+...-+.+.-..+|..|-.
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 456899999999998877666566667778877743
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.25 E-value=5.7 Score=33.11 Aligned_cols=67 Identities=13% Similarity=0.338 Sum_probs=47.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C--CCCHHHHHHHHHhhCCC-------CCCcccHHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-E--KLTDEEVDEMIREADVD-------GDGQINYEEFVKVMMAK 149 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~l~~~~d~~-------~~g~i~~~ef~~~l~~~ 149 (183)
....+..+|..+..++ +.++.++|..+|.... . ..+.+.+..++..+-.. ..+.+++++|..+|.+.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4568889999985443 7899999999997754 2 23556666666554221 23469999999999874
No 139
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.22 E-value=6.3 Score=24.45 Aligned_cols=61 Identities=15% Similarity=0.315 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHH
Q 044644 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD---GNGTIDFPEFLNLMA 74 (183)
Q Consensus 9 e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~g~v~~~ef~~~~~ 74 (183)
....+++.|..+.. +|+|+...|..++ |..-+.+-+..+|.++... ....|+.+++..++.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 35566777777755 6788888886654 4445666677777665321 123455555555443
No 140
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.46 E-value=2 Score=35.36 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP----TEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
+|++.-++.+..+|..+|.+++|.++..|+..+....+..+ ...+.- -.+..|.+++.-|+..+.
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHH
Confidence 67888899999999999999999999999999988875433 111111 122578899998887664
No 141
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=83.04 E-value=0.69 Score=32.45 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=39.6
Q ss_pred HHhhc-CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 90 FRVFD-KDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (183)
Q Consensus 90 f~~~D-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l 146 (183)
|..+| ...||++|..|+.-+-. ..-.-++.+..+|...|.|.||+|+++||...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34444 34789999888876522 112345567889999999999999999998654
No 142
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=83.01 E-value=2.8 Score=38.30 Aligned_cols=57 Identities=26% Similarity=0.550 Sum_probs=47.7
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 16 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (183)
Q Consensus 16 ~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 73 (183)
.|..+|+++.|.|+..+|..++..- ...+.+++.-++.-...+.+..++|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4677899999999999999887653 34677888888888888899999999999654
No 143
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.36 E-value=5.2 Score=34.73 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD-----EEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
..++..+|..++....|.++.+++..++..+|+.... .++..++...+.+..|.|++.+|..+|....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3567888999999999999999999999999977664 2344456666777779999999999887543
No 144
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=81.35 E-value=3 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=12.7
Q ss_pred HHhhCCCCCCceeHHHHHHHH
Q 044644 17 FSLFDKDGDGCITTKELGTVM 37 (183)
Q Consensus 17 f~~~d~~~~g~l~~~e~~~~l 37 (183)
|...|.+++|.++..++..++
T Consensus 250 F~LHD~NsDGfldeqELEaLF 270 (442)
T KOG3866|consen 250 FALHDLNSDGFLDEQELEALF 270 (442)
T ss_pred eeeeccCCcccccHHHHHHHH
Confidence 455566666666666665554
No 145
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=81.05 E-value=9.9 Score=23.61 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHHHHHHh
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD---GDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~g~i~~~ef~~~l~~~~~~ 152 (183)
...+..-|..+-. +|.|+..+|..++ |.+-+.+-+.++|..+... ....|+.+|+..+|.+...+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 4455555777655 7899998888865 3335566667777665322 24678999988888876544
No 146
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.93 E-value=6.9 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 24 GDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
++..|+.+.++..+..+|..+|+..++++++.+-
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3678999999999999999999999999988763
No 147
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=80.12 E-value=12 Score=23.59 Aligned_cols=55 Identities=16% Similarity=0.407 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNL 72 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~ 72 (183)
+...|..+...++...+..++..+|...|.....+.+..++..+ .|+ +.++.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 44566777777777889999999999999999999999999887 344 77887753
No 148
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=79.60 E-value=1.8 Score=27.60 Aligned_cols=31 Identities=23% Similarity=0.547 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 44 PTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 44 ~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
+++++.+++|..+..+..|+|.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6788899999999999999999999998665
No 149
>PRK00523 hypothetical protein; Provisional
Probab=77.15 E-value=8.5 Score=22.35 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=30.3
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 24 GDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
.+..|+.+.++.....+|..+|+..++++.+.+.
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3678999999999999999999999999988773
No 150
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.64 E-value=9.9 Score=21.57 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=29.6
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
+..|+.+.++.....+|..+|+..++.+.+.+.
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 567999999999999999999999999987763
No 151
>PLN02223 phosphoinositide phospholipase C
Probab=75.63 E-value=15 Score=30.26 Aligned_cols=68 Identities=4% Similarity=-0.031 Sum_probs=47.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHh-C-CCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHHH
Q 044644 82 SEEELKEAFRVFDKDQNGFISAAELRHVM---TNL-G-EKLTDEEVDEMIREADVD--------GDGQINYEEFVKVMMA 148 (183)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~l~~~~d~~--------~~g~i~~~ef~~~l~~ 148 (183)
..+.+..+|..+. .+.|.++.+.+.+++ ... | ...+.+.++.++..+-.. ..+.+++++|..+|.+
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 3467888888883 566888888888888 443 2 345666777777655322 2356999999999988
Q ss_pred HH
Q 044644 149 KR 150 (183)
Q Consensus 149 ~~ 150 (183)
..
T Consensus 93 ~~ 94 (537)
T PLN02223 93 TE 94 (537)
T ss_pred cc
Confidence 65
No 152
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=75.19 E-value=3.8 Score=17.62 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=6.9
Q ss_pred cCCCCCcccHHHHH
Q 044644 94 DKDQNGFISAAELR 107 (183)
Q Consensus 94 D~~~~g~i~~~e~~ 107 (183)
|.|+||.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34555555555444
No 153
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=73.31 E-value=6.3 Score=22.76 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-------CCCcccHHHHHH
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD-------GNGTIDFPEFLN 71 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~g~v~~~ef~~ 71 (183)
++...|+.+ .++.++||..++++.|.. +.+..+...+..- ..|.++|..|+.
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 567888888 677899999999887532 2224444444321 236678887764
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=72.54 E-value=11 Score=29.97 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=48.7
Q ss_pred CCCCcccHHHHHHHHHhhcCCCC---cHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCC
Q 044644 59 DGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGD 134 (183)
Q Consensus 59 ~~~g~v~~~ef~~~~~~~~~~~~---~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~ 134 (183)
.++...+..+|+......+.... --+.++.+-+.+|-|++|.|+.+|=..+++. +.+.-+..--.+ .+.. .|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH~-dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFHG-DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hccC-Cc
Confidence 45555666666654433322211 2366777888888888888888877777754 222211111111 2322 44
Q ss_pred CcccHHHHHHHHHHHH
Q 044644 135 GQINYEEFVKVMMAKR 150 (183)
Q Consensus 135 g~i~~~ef~~~l~~~~ 150 (183)
..|+.++....|....
T Consensus 116 ~~ItVedLWeaW~~Se 131 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESE 131 (575)
T ss_pred cceeHHHHHHHHHhhh
Confidence 5677776666665544
No 155
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.46 E-value=14 Score=31.42 Aligned_cols=84 Identities=25% Similarity=0.459 Sum_probs=60.4
Q ss_pred CCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhCCC
Q 044644 61 NGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL---G-----EKLTDEEVDEMIREADVD 132 (183)
Q Consensus 61 ~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~l~~~~d~~ 132 (183)
++ +++++|. ....+.+..+..+|..+|. ++|.++.+++..++... + ...+.+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7788877 2233467788899999987 88999999888887542 1 223445566678888888
Q ss_pred CCCcccHHHHHHHHHHHHHh
Q 044644 133 GDGQINYEEFVKVMMAKRRR 152 (183)
Q Consensus 133 ~~g~i~~~ef~~~l~~~~~~ 152 (183)
..|++.++++...+......
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~ 93 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTL 93 (646)
T ss_pred ccceeeecchhHHHHhchHH
Confidence 88888888888777755533
No 156
>PRK01844 hypothetical protein; Provisional
Probab=71.89 E-value=12 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 24 GDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
.+..|+.+.++......|..+|+..++++.+.+.
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999999999988773
No 157
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=71.57 E-value=21 Score=21.97 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=26.9
Q ss_pred CCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 98 NGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 98 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
||.++..|...+-.-+. ..+++.+...++..+........++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56666665555432211 1355566666665554444445566666666554
No 158
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.65 E-value=30 Score=23.08 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=54.8
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHH--cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 044644 15 EAFSLFDKDGDGCITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 92 (183)
Q Consensus 15 ~~f~~~d~~~~g~l~~~e~~~~l~~--~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 92 (183)
-.|..+.. +|.++..|...+..- -.+.++.+.+..+..+...-+...+++..|-..+...+......+.+..+|..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45666554 566776666554322 24567788888888777666667788888887776554433334455556666
Q ss_pred hcCCCCCcccHHHHHH
Q 044644 93 FDKDQNGFISAAELRH 108 (183)
Q Consensus 93 ~D~~~~g~i~~~e~~~ 108 (183)
.- .||.++.-|-.-
T Consensus 112 a~--ADg~l~e~Ed~v 125 (148)
T COG4103 112 AY--ADGELDESEDHV 125 (148)
T ss_pred HH--ccccccHHHHHH
Confidence 53 456666544433
No 159
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=69.32 E-value=19 Score=20.67 Aligned_cols=48 Identities=10% Similarity=0.237 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
++.+++..++...|..++.+++..++..-+..+--..+-+.+..|+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 445577778877778888888888887754433334444555555543
No 160
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.31 E-value=29 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=18.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMTN 112 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (183)
+-.++..||++++|.|+.-.++..+.-
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 456688889999999998888877654
No 161
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=67.75 E-value=24 Score=21.26 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=32.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 044644 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 145 (183)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 145 (183)
+...|+..+|...+...-......+...+=..+|..++++||-=||--+
T Consensus 19 ~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHH
Confidence 3467888888888877644444456667777788888888886666544
No 162
>PLN02222 phosphoinositide phospholipase C 2
Probab=67.73 E-value=30 Score=28.96 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHh
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ--NPTEAELQDMINEVDA-DGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~g~v~~~ef~~~~~~ 75 (183)
+++.|+ ..+|..+.. ++.++.++|..+|..... ..+.+.+..|+..+.. ...+.++++.|..++..
T Consensus 22 ~~~~ei---~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREI---KTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHH---HHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 345555 556666643 479999999999988743 3467778888887632 23567999999998854
No 163
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.72 E-value=15 Score=18.97 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhCC--CCCCceeHHHHHHHHHH
Q 044644 9 QISEFKEAFSLFDK--DGDGCITTKELGTVMRS 39 (183)
Q Consensus 9 e~~~l~~~f~~~d~--~~~g~l~~~e~~~~l~~ 39 (183)
-+..+-.+|..|.. .....++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45567778888853 23578999999888765
No 164
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=67.67 E-value=2.2 Score=30.07 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 044644 60 GNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM 110 (183)
Q Consensus 60 ~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 110 (183)
.+|.+|..+++-+-..+.+ ....+...|..+|.|+||+|+.+|....+
T Consensus 201 ~d~~~sh~el~pl~ap~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3566777666544443332 34678889999999999999998887654
No 165
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=14 Score=29.14 Aligned_cols=58 Identities=28% Similarity=0.429 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
..+.++|..+.+ -+|+||-..-+..+... .+..+.+..+++..|.|+||.++-+||.-
T Consensus 444 ~~yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 444 PTYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred cchHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 346677877755 47899988777776554 48888999999999999999999999973
No 166
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.32 E-value=5.9 Score=30.78 Aligned_cols=61 Identities=31% Similarity=0.546 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-hCCCCCCcccHHHHH
Q 044644 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE-ADVDGDGQINYEEFV 143 (183)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~-~d~~~~g~i~~~ef~ 143 (183)
.+.+++.|+.+|+.+.|+|+..-++.++...+..+++...-.+... ++...-|.|-..+|.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 5788999999999999999999999999988866666555444433 344444444444443
No 167
>PLN02228 Phosphoinositide phospholipase C
Probab=66.24 E-value=42 Score=28.07 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHh
Q 044644 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ--NPTEAELQDMINEVDAD----GNGTIDFPEFLNLMAR 75 (183)
Q Consensus 6 ~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~~ 75 (183)
+++|+ ..+|..+.. ++.++.++|..+|..... ..+...+..++..+... ..|.++.+.|..++..
T Consensus 22 ~~~ei---~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSI---KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHH---HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 56666 445555543 358999999999988743 35567788888887643 3467999999998854
No 168
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=64.20 E-value=40 Score=22.45 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCC
Q 044644 98 NGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDG 133 (183)
Q Consensus 98 ~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~ 133 (183)
.+.|+.+.|+.+|.. +...++++-..++|..+-...
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 347999999999988 455677778889998884433
No 169
>PLN02230 phosphoinositide phospholipase C 4
Probab=63.25 E-value=51 Score=27.78 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHh
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQ---NPTEAELQDMINEVDA-------DGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~-------~~~g~v~~~ef~~~~~~ 75 (183)
.++.+|..+..+ ++.++.++|..+|..... ..+...+..++..+.. -..+.++.+.|..++..
T Consensus 30 ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 457778887544 379999999999988753 2356667777765422 12346999999998754
No 170
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=61.12 E-value=28 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=7.5
Q ss_pred CCCcccHHHHHHHHHH
Q 044644 97 QNGFISAAELRHVMTN 112 (183)
Q Consensus 97 ~~g~i~~~e~~~~l~~ 112 (183)
..+.|+.+||.+.++.
T Consensus 38 k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 38 KKKKISREEFVRKLRQ 53 (70)
T ss_pred HHCCCCHHHHHHHHHH
Confidence 3444555555444443
No 171
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=60.93 E-value=23 Score=19.76 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=25.8
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 044644 26 GCITTKELGTVMRSLGQNPTEAELQDMINEV 56 (183)
Q Consensus 26 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 56 (183)
-.+|.+|+...+..++..++..++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3578889999999998888888888888775
No 172
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=59.88 E-value=87 Score=24.93 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=59.9
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCc---
Q 044644 24 GDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGF--- 100 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~--- 100 (183)
....+....|.++|.+.....+--++..+-..+|...++.|+.=||=.+.+.+. ....+..-|..+..-+-|+
T Consensus 187 ~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq----Pw~tllkNWq~LavtHPGYmAF 262 (563)
T KOG1785|consen 187 KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ----PWKTLLKNWQTLAVTHPGYMAF 262 (563)
T ss_pred CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc----cHHHHHHhhhhhhccCCceeEE
Confidence 355778888888888876555556677777788888889998777766665432 3444555566666667774
Q ss_pred ccHHHHHHHHHHh
Q 044644 101 ISAAELRHVMTNL 113 (183)
Q Consensus 101 i~~~e~~~~l~~~ 113 (183)
++.+|++.-+...
T Consensus 263 LTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 263 LTYDEVKARLQKY 275 (563)
T ss_pred eeHHHHHHHHHHH
Confidence 6788888877553
No 173
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.57 E-value=12 Score=29.27 Aligned_cols=59 Identities=22% Similarity=0.402 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHH-HHHHHHhhCCCCCCcccHHHH
Q 044644 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAE-LQDMINEVDADGNGTIDFPEF 69 (183)
Q Consensus 11 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~g~v~~~ef 69 (183)
.+++++|..+|+.++|+|+..-+..++..++...++.. +..+=..++...-|.|-..+|
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 57889999999999999999999988888774444433 333222333333444434443
No 174
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=59.26 E-value=91 Score=27.74 Aligned_cols=97 Identities=16% Similarity=0.306 Sum_probs=63.3
Q ss_pred hhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCC--CCCccc-----HHHHHHHHHHhCCCCCHHHHHHHHH
Q 044644 55 EVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKD--QNGFIS-----AAELRHVMTNLGEKLTDEEVDEMIR 127 (183)
Q Consensus 55 ~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~-----~~e~~~~l~~~~~~~~~~~~~~l~~ 127 (183)
.+-.+..|+|-...++..+.... ....+..+...+-.. +...|. .+.|..++..+ ....+++.+|.
T Consensus 156 kmqvn~~grip~knI~k~F~~~k----~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ 228 (1189)
T KOG1265|consen 156 KMQVNFEGRIPVKNIIKTFSADK----KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFR 228 (1189)
T ss_pred hhcccccccccHHHHHHHhhcCC----chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---CCchhHHHHHH
Confidence 34567788888888887776432 124455554444322 223344 34455555554 34578999999
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHHhhHHHHh
Q 044644 128 EADVDGDGQINYEEFVKVMMAKRRRKRIEER 158 (183)
Q Consensus 128 ~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 158 (183)
.+..+...+++.+++..|+.....-.+..+.
T Consensus 229 ki~~~~kpylT~~ql~dfln~~QrDpRLNei 259 (1189)
T KOG1265|consen 229 KISGKKKPYLTKEQLVDFLNKKQRDPRLNEI 259 (1189)
T ss_pred HhccCCCccccHHHHHHHHhhhccCcchhhh
Confidence 9988888999999999999887655544443
No 175
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=58.88 E-value=38 Score=20.45 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
+-.|+..+|...|+....-.+..+...+=..+|...++.||.=||-.+.+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 456888888888887755555566677777788888888887777766654
No 176
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=57.48 E-value=78 Score=23.63 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred CCCceeHHHHHHHHHHc--CCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHH----HHHHHhhc
Q 044644 24 GDGCITTKELGTVMRSL--GQNPTEAE---LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL----KEAFRVFD 94 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~--~~~~~~~~---~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~----~~~f~~~D 94 (183)
-||.++..|+. ....+ ...++.+. +..+|+.- .....++.+|+.-+...+.. ....+ ..+|..-
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~--r~~l~~~lL~~l~~vA- 140 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGG--RFDLLRMFLEIQIQAA- 140 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHH-
Confidence 48999999997 33333 13445555 45555543 34458899999877654432 22222 3334433
Q ss_pred CCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHh
Q 044644 95 KDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIRE 128 (183)
Q Consensus 95 ~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~ 128 (183)
-.||.++..|-.-+..-.. ..++..++..+...
T Consensus 141 -~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 141 -FADGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred -HhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2467788877443332211 34777777776554
No 177
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=56.43 E-value=50 Score=21.11 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=41.0
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71 (183)
Q Consensus 14 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 71 (183)
-..|..+...++..+|.+++..+|...|..+....+..+++.+. ..++++++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 34455555556667999999999999999999999988888873 366777775
No 178
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.39 E-value=8.7 Score=35.92 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPT----EAELQDMINEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
.|++.+++.+.+++..+|++..|.|...++..++..+..++. ... +.+-..+....++.|++.+-...+.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 488999999999999999999999999999999988743321 111 3333334455677888887666554
No 179
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=55.77 E-value=34 Score=18.96 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCc----eeHHHHHHHHHHcCC
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGC----ITTKELGTVMRSLGQ 42 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~----l~~~e~~~~l~~~~~ 42 (183)
+.|+.+++..|...|... |+ .+..+...+...+|+
T Consensus 6 T~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCC
Confidence 368899999999999763 55 777888888888764
No 180
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=53.78 E-value=55 Score=20.77 Aligned_cols=53 Identities=21% Similarity=0.438 Sum_probs=40.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 87 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
.-+|-..+..+.-..+..+++.++...|.....+.+..+++.+. |+ +.+|.++
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 33455556667778999999999999999999999999999982 22 4555554
No 181
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=53.55 E-value=42 Score=19.29 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 29 TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 29 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
+..++..++...|..++..++..++..=+..+-...+=..+..++.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 3455666677777777777777776664443333344444444443
No 182
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=53.21 E-value=49 Score=20.00 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=34.7
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q 044644 99 GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (183)
Q Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~ 143 (183)
..||..|+..+....+.+++++.+..++..+..+.-.-.+-++=.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~ 57 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERK 57 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 458999999999999999999999999999866554333433333
No 183
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=53.13 E-value=43 Score=21.16 Aligned_cols=20 Identities=10% Similarity=0.634 Sum_probs=10.9
Q ss_pred hhcCCCCCcccHHHHHHHHH
Q 044644 92 VFDKDQNGFISAAELRHVMT 111 (183)
Q Consensus 92 ~~D~~~~g~i~~~e~~~~l~ 111 (183)
.+|.....+||.+++.+++.
T Consensus 11 LYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred ccCCCccceeeHHHHHHHHH
Confidence 34555555555555555553
No 184
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=52.80 E-value=28 Score=19.74 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.3
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC
Q 044644 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 60 (183)
++.++..++...|..-|...+++.+...++.++.++
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 467888999998888888899999999998887654
No 185
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=52.69 E-value=14 Score=24.20 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=37.1
Q ss_pred CCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCccc
Q 044644 25 DGCITTKELGTVMRSL--GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFIS 102 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 102 (183)
||.++.+|...+...+ ....+......+...+.......+++.+|+..+............+..++...-.| |.++
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~~ 114 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEIS 114 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-S
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCCC
Confidence 6788888877665544 22334444555555554333335666777665544322111233444555555444 4444
Q ss_pred HH
Q 044644 103 AA 104 (183)
Q Consensus 103 ~~ 104 (183)
..
T Consensus 115 ~~ 116 (140)
T PF05099_consen 115 PE 116 (140)
T ss_dssp CC
T ss_pred HH
Confidence 33
No 186
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=52.48 E-value=60 Score=20.78 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=38.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 89 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
+|-.....++..+|.+++..++...|..+....+..+++.+. ..+.++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 333444556667999999999999999999998999998882 345566554
No 187
>PRK08181 transposase; Validated
Probab=51.94 E-value=85 Score=23.47 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhHHHHhhh
Q 044644 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRRRKRIEERSS 160 (183)
Q Consensus 98 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 160 (183)
..+|+.+.+...+..+..+--.+.+...... -..+.++|.+|+..+...+...+......
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~---a~~~~~~~~e~L~~ll~~E~~~R~~~~~~ 63 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQ---ADKEGWPAARFLAAIAEHELAERARRRIE 63 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHH---HhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887643222333333332 24567899999999998877666655543
No 188
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=51.47 E-value=1.1e+02 Score=23.38 Aligned_cols=65 Identities=11% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCCcccHHHHHHHHHHhC---------------CCCCHHHHHHHHHhhCCCC-----CCcccHHHHHHHHHHHHHhhHHH
Q 044644 97 QNGFISAAELRHVMTNLG---------------EKLTDEEVDEMIREADVDG-----DGQINYEEFVKVMMAKRRRKRIE 156 (183)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~---------------~~~~~~~~~~l~~~~d~~~-----~g~i~~~ef~~~l~~~~~~~~~~ 156 (183)
++-.|+..+|.+++.++. ..+++..+..+.+.+-.|. +|.|+...|.+.+...-..+=++
T Consensus 214 ~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~AnKsSYID 293 (323)
T PF12987_consen 214 GDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTGANKSSYID 293 (323)
T ss_pred ccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhcccchhhHH
Confidence 678899999999986641 2367788888888764442 67899999999988755444444
Q ss_pred Hhhhh
Q 044644 157 ERSSA 161 (183)
Q Consensus 157 ~~~~~ 161 (183)
.-..+
T Consensus 294 ~fLdR 298 (323)
T PF12987_consen 294 SFLDR 298 (323)
T ss_pred HHHhh
Confidence 44333
No 189
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=50.88 E-value=72 Score=23.55 Aligned_cols=48 Identities=10% Similarity=0.334 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
.||..|+..+++++..++.+ +|.++..++...+ .++...+...++.+.
T Consensus 176 tLSySEleAv~~IL~~L~~~-egrlse~eLAerl-----GVSRs~ireAlrkLE 223 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGN-EGLLVASKIADRV-----GITRSVIVNALRKLE 223 (251)
T ss_pred hccHhHHHHHHHHHHHhccc-cccccHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence 45666777777777776432 4667766665543 345555555555553
No 190
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=50.33 E-value=26 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.607 Sum_probs=17.5
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q 044644 91 RVFDKDQNGFISAAELRHVMTN 112 (183)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (183)
+.+|.....+|+.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4578888888999998888754
No 191
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=49.14 E-value=44 Score=27.24 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHH
Q 044644 7 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL 86 (183)
Q Consensus 7 ~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~ 86 (183)
.+.++..-.+|...-+.+...++..++..++..+|.....++-.+.|..-+...+ .+.|.++.......+. +...+
T Consensus 481 ~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel~---D~d~v 556 (612)
T COG5069 481 WQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSELV---DYDLV 556 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhhc---Chhhh
Confidence 4445555567777656566679999999999999876665555555544332222 4667777666554332 33444
Q ss_pred HHHHHhh
Q 044644 87 KEAFRVF 93 (183)
Q Consensus 87 ~~~f~~~ 93 (183)
...|..+
T Consensus 557 ~~~~~~f 563 (612)
T COG5069 557 TRGFTEF 563 (612)
T ss_pred hhhHHHH
Confidence 5555444
No 192
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=47.17 E-value=57 Score=21.63 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=38.5
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHH
Q 044644 97 QNGFISAAELRHVMTNLG---------EKLTDEEVDEMIREADVDGDGQ-INYEEFVKV 145 (183)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~l~~~~d~~~~g~-i~~~ef~~~ 145 (183)
|+..||.+||.+++..-. ..+++..+..+...+...+.+. +++.|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 678899999999987642 2468899999999997766664 998887654
No 193
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=47.14 E-value=47 Score=25.76 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=45.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 044644 87 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKR 150 (183)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~ 150 (183)
..+..++|..+.|.++.--++-.+..++.+--.+.++.+|+.+ .+..|-+.+-.|..++....
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHH
Confidence 4456678999999988887888777776555566778888888 66677666666666655543
No 194
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=46.18 E-value=46 Score=17.66 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINE 55 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~ 55 (183)
..+++.++..|...|.. +.+.+..+...+...+| ++...|..-|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 35678888899999986 45778888888877775 455666655543
No 195
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=46.13 E-value=27 Score=19.57 Aligned_cols=26 Identities=8% Similarity=0.314 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 044644 100 FISAAELRHVMTNLGEKLTDEEVDEM 125 (183)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~l 125 (183)
.|+.++|..++......++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888888777888777654
No 196
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=45.83 E-value=56 Score=19.41 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 34 GTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 34 ~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
..||+.. |..++.+....+-+.++......|+|+|++.+...
T Consensus 35 ~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 35 ATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4466665 44555555444444444455567999999887654
No 197
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=45.47 E-value=24 Score=20.99 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=15.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 044644 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (183)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 129 (183)
..|+||.+++..+|.... ++...+..++..+
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 356677777777665332 5666666666655
No 198
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=44.76 E-value=49 Score=17.60 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHH
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMI 53 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~ 53 (183)
.+++.++..|...|.. +.+.+..+...+...+| ++...|..-|
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF 48 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWF 48 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCH
Confidence 5788899999999985 56778888888777775 4455555544
No 199
>PF13551 HTH_29: Winged helix-turn helix
Probab=44.48 E-value=74 Score=19.51 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHH--HHcCCCCCHHHHHHHHHh
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVM--RSLGQNPTEAELQDMINE 55 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l--~~~~~~~~~~~~~~l~~~ 55 (183)
+++++...+.+.+......+.+..+...+...| ...+..++..-+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 555555555555554333322345555555533 223455555555555443
No 200
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=43.85 E-value=75 Score=19.42 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC-CCC-cHHHHHHHHHhhcCCCCCcc
Q 044644 25 DGCITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK-DTD-SEEELKEAFRVFDKDQNGFI 101 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~-~~~-~~~~~~~~f~~~D~~~~g~i 101 (183)
||.++..|...+-..+ ....+......+...+........++.+|...+..... .+. ....+..+|..-- .||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--ADG~~ 90 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--ADGEL 90 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCCC
Confidence 6778877775543322 12233333333333332222223667777776665431 111 1233444455443 35667
Q ss_pred cHHHHHH
Q 044644 102 SAAELRH 108 (183)
Q Consensus 102 ~~~e~~~ 108 (183)
+..|-.-
T Consensus 91 ~~~E~~~ 97 (106)
T cd07316 91 SEAEREL 97 (106)
T ss_pred CHHHHHH
Confidence 7665443
No 201
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=43.50 E-value=40 Score=19.60 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=4.2
Q ss_pred eeHHHHHHHHH
Q 044644 28 ITTKELGTVMR 38 (183)
Q Consensus 28 l~~~e~~~~l~ 38 (183)
++..|...++.
T Consensus 54 fS~sEm~aI~~ 64 (71)
T PF06569_consen 54 FSPSEMQAIAE 64 (71)
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 202
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=42.28 E-value=93 Score=20.06 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 12 EFKEAFSLFDKDGDGCITTKELGTVMRSL--GQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (183)
Q Consensus 12 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 73 (183)
...+.|..+.+.+.++|+..-+...+.-+ |...+.+.+....+.+=.+..=.|...+|+...
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~~~~f~V~~~d~i~~A 85 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLNDELFNVELKDFIREA 85 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccccceecchHHHHHH
Confidence 46788888888888999988887766555 555666666666665433333345666665544
No 203
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=42.11 E-value=24 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=18.8
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHH
Q 044644 128 EADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 128 ~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
....|..|.|+++.|++.+.-.-.
T Consensus 10 ~~~~n~~G~iTl~gfLa~W~l~T~ 33 (76)
T PF08355_consen 10 SVVTNEKGWITLQGFLAQWSLTTL 33 (76)
T ss_pred eeEEcCCCcCcHHHHHHHHHHHHH
Confidence 345788999999999998875443
No 204
>PLN02223 phosphoinositide phospholipase C
Probab=41.59 E-value=1.5e+02 Score=24.78 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHH---HHcC--CCCCHHHHHHHHHhhCCCC--------CCcccHHHHHHHHHh
Q 044644 13 FKEAFSLFDKDGDGCITTKELGTVM---RSLG--QNPTEAELQDMINEVDADG--------NGTIDFPEFLNLMAR 75 (183)
Q Consensus 13 l~~~f~~~d~~~~g~l~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~g~v~~~ef~~~~~~ 75 (183)
++.+|..+. .+.|.++.+.+.++| .... ...+.++++.++..+-... .+.++.+.|..++..
T Consensus 18 v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 18 ILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 466777773 567899999999988 4432 2456777777777653322 255999999998854
No 205
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=40.82 E-value=95 Score=19.74 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=37.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 044644 90 FRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 145 (183)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 145 (183)
|-.....++..+|.+++..++...|..+....+..+++.+. ..+.++.+.-
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~ 57 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAA 57 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 33334456668999999999999998888888888888882 2455666554
No 206
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=40.09 E-value=83 Score=23.40 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMIN 54 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~ 54 (183)
..|+.+++.+|+..|+. +-||+..--+.+.+.|+ +++..|+..|.
T Consensus 251 TAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELg--LNEsQIKIWFQ 295 (342)
T KOG0493|consen 251 TAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELG--LNESQIKIWFQ 295 (342)
T ss_pred ccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhC--cCHHHhhHHhh
Confidence 36788999999999974 56888877777888876 45666766654
No 207
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.82 E-value=36 Score=32.19 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 80 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLT----DEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
+++-+.+..+|..+|++..|.|...++..++..+.+++. ... +.+...+-.+.+|.|++.+-+..+...
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 446688999999999999999999999999988754321 111 333344555577788888777665543
No 208
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=38.96 E-value=58 Score=20.02 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCceeHHHHHHHHHHcCC-----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCC
Q 044644 25 DGCITTKELGTVMRSLGQ-----NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNG 99 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~-----~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 99 (183)
||.++..|...+...+.. ......+..++...-..- ...+..++...+............+..++..... ||
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG 92 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DG 92 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cC
Confidence 677888887776655531 123344444544432210 0234455555555443311122334444544433 45
Q ss_pred cccHHHH
Q 044644 100 FISAAEL 106 (183)
Q Consensus 100 ~i~~~e~ 106 (183)
.++..|-
T Consensus 93 ~~~~~E~ 99 (111)
T cd07176 93 EVDPEER 99 (111)
T ss_pred CCCHHHH
Confidence 5655443
No 209
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.91 E-value=86 Score=24.98 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=12.5
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHH
Q 044644 45 TEAELQDMINEVDADGNGTIDFPEFL 70 (183)
Q Consensus 45 ~~~~~~~l~~~~d~~~~g~v~~~ef~ 70 (183)
+.+.+-.+|...|.+.+|.++-++|.
T Consensus 475 pnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 475 PNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chhHHHhhhhhhcCCcccCcCHHHHH
Confidence 34444445555555555555544443
No 210
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=38.61 E-value=61 Score=16.85 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 103 AAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (183)
Q Consensus 103 ~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 144 (183)
.+|....|..+| .++.++...+..+.. ...++.++.+.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 357777888887 788888888888754 34455666554
No 211
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=36.11 E-value=2.2e+02 Score=24.85 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
...+|+..-..+.-.+..+++..+ +.+++++..++.++...++.|+++.|.+.....-.
T Consensus 406 A~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 406 ARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 456677777766667776666665 67888999999998877777999999998876654
No 212
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=35.80 E-value=1.5e+02 Score=20.47 Aligned_cols=15 Identities=7% Similarity=0.335 Sum_probs=6.9
Q ss_pred cccHHHHHHHHHHhC
Q 044644 100 FISAAELRHVMTNLG 114 (183)
Q Consensus 100 ~i~~~e~~~~l~~~~ 114 (183)
.|+.++...++...|
T Consensus 115 ~V~~~~w~~l~~~~g 129 (172)
T cd04790 115 LVTKEKWVAILKAAG 129 (172)
T ss_pred cCCHHHHHHHHHHcC
Confidence 344444444444444
No 213
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=34.87 E-value=1.4e+02 Score=23.29 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=23.9
Q ss_pred hhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 044644 19 LFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (183)
Q Consensus 19 ~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 73 (183)
.+|..+.|+++..-....|..+...--....+.||..+. +.+|.+.+-.|..++
T Consensus 118 A~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 118 AEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred hcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 344445555555555444444433333444555554442 233433433333333
No 214
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.83 E-value=1.9e+02 Score=21.57 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=43.3
Q ss_pred HHHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 044644 84 EELKEAFRVF-DKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (183)
Q Consensus 84 ~~~~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~ 149 (183)
..+..+|..+ |++.+..|-.+-+.++|..+|....+-.+--+.=.+..-..|..+.++|+.-+...
T Consensus 64 ~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 64 KRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 3445555444 77776789999999999999954443322222233445567889999998866554
No 215
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=34.65 E-value=1e+02 Score=18.38 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=10.5
Q ss_pred CCceeHHHHHHHHHHc
Q 044644 25 DGCITTKELGTVMRSL 40 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~ 40 (183)
||.++..|...+...+
T Consensus 13 DG~i~~~E~~~i~~~~ 28 (104)
T cd07177 13 DGRVDEEEIAAIEALL 28 (104)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6778877776654443
No 216
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=34.04 E-value=1.3e+02 Score=19.29 Aligned_cols=52 Identities=21% Similarity=0.472 Sum_probs=39.1
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 044644 15 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71 (183)
Q Consensus 15 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 71 (183)
..|..+-..++..+|.+++..+|...|.......+..+++.+. ..++.+.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~-----gK~i~eLIa 56 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK-----GKDITELIA 56 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3444444456667999999999999999888888888888873 256777764
No 217
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=33.85 E-value=83 Score=18.76 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
.++.+++..++++|..+=..+ .+.++-...+... .....++..+..-+.
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~--~~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG---LTLEEALEELEEE--YPDSPEVREIVDFIR 75 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHH--TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHh--ccCCHHHHHHHHHHH
Confidence 578889999999987773322 3444444434332 122344444444443
No 218
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=33.02 E-value=98 Score=21.71 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=20.2
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 044644 94 DKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (183)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 129 (183)
..+.+|+++.+|+-+.+..-+..++.+++..++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 356678888888887776656667777777777664
No 219
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=31.67 E-value=1.2e+02 Score=18.00 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-CCCcccHHHHHHHH
Q 044644 103 AAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKVM 146 (183)
Q Consensus 103 ~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-~~g~i~~~ef~~~l 146 (183)
.+++...| .|.+.+.+.+...+..++.+ --|.++.+++++++
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45555555 34557778888888777444 34578888887754
No 220
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=31.25 E-value=1.5e+02 Score=22.95 Aligned_cols=14 Identities=29% Similarity=0.524 Sum_probs=5.9
Q ss_pred CcccHHHHHHHHHH
Q 044644 135 GQINYEEFVKVMMA 148 (183)
Q Consensus 135 g~i~~~ef~~~l~~ 148 (183)
|.||.+|-+..+..
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444444333
No 221
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=30.92 E-value=1.3e+02 Score=18.25 Aligned_cols=11 Identities=0% Similarity=0.232 Sum_probs=4.5
Q ss_pred ccHHHHHHHHH
Q 044644 64 IDFPEFLNLMA 74 (183)
Q Consensus 64 v~~~ef~~~~~ 74 (183)
++-.+...++.
T Consensus 40 ~T~~Qv~~il~ 50 (95)
T PF14771_consen 40 FTCAQVKQILS 50 (95)
T ss_pred eeHHHHHHHHH
Confidence 44444444433
No 222
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=30.80 E-value=37 Score=22.75 Aligned_cols=54 Identities=13% Similarity=0.304 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (183)
Q Consensus 2 ~~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 74 (183)
...||++|+.++......+|+++. .|+...- + =....+..+|.++.+..+.++.
T Consensus 21 L~~LS~EEL~~L~~el~e~DPd~~-~lP~g~R-q-----------------~dQT~K~pTG~fdRe~Ll~~le 74 (147)
T PF03250_consen 21 LAKLSPEELEELENELEEMDPDNS-LLPAGMR-Q-----------------RDQTEKPPTGPFDREALLDYLE 74 (147)
T ss_pred HHhCCHHHHHHHHHHHHhhCCCcc-cCChhhh-c-----------------ccccCCCCCCCcCHHHHHHHHH
Confidence 356888888888888888877642 1221111 0 1123455677777777776664
No 223
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=30.66 E-value=1.3e+02 Score=21.07 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 044644 22 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDA 58 (183)
Q Consensus 22 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 58 (183)
.+.+|+++.+++...+..-+..++.+++..+...-++
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 4668999999998887776667788888888776543
No 224
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.68 E-value=2.4e+02 Score=21.09 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=48.7
Q ss_pred HHHHHHHHHhh-CCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 044644 10 ISEFKEAFSLF-DKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (183)
Q Consensus 10 ~~~l~~~f~~~-d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 75 (183)
...+...|..+ |+..+..|..+-+..++..+|+.+..-.+..+.-.+....-+..+.++|+..+..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 44566677666 4444467888888899999999888777766666777666778899999886643
No 225
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=29.67 E-value=1.8e+02 Score=19.73 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=32.1
Q ss_pred HHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 044644 85 ELKEAFRVF-DKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (183)
Q Consensus 85 ~~~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 130 (183)
.+..+|..| |.+.+-..+.+++..-|...| +...++...+..++
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 345566665 444567788999999999888 88888887776553
No 226
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=28.95 E-value=1.5e+02 Score=20.66 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=17.5
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 044644 96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128 (183)
Q Consensus 96 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 128 (183)
|.+|.+..+++...+...+..++.+.+..++..
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 445666666666555443334555555555443
No 227
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=28.40 E-value=1.3e+02 Score=20.04 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC-----CcccHHHHHHHHHH
Q 044644 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGD-----GQINYEEFVKVMMA 148 (183)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~-----g~i~~~ef~~~l~~ 148 (183)
.|.+|+..+...+..+++++++..++..++.-+. -.|+..--...+..
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~ 79 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIRE 79 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHH
Confidence 5678888887777778899999999988866432 24666444444443
No 228
>PHA02105 hypothetical protein
Probab=27.33 E-value=1.2e+02 Score=16.78 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=28.5
Q ss_pred ceeHHHHHHHHHHc---CCCCCHHHHHHHHHhhCCCCCC--cccHHHHHHHHH
Q 044644 27 CITTKELGTVMRSL---GQNPTEAELQDMINEVDADGNG--TIDFPEFLNLMA 74 (183)
Q Consensus 27 ~l~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~g--~v~~~ef~~~~~ 74 (183)
+++.++|..++... ...+..+-+.++-..+...+-. .++|++|-..+-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 46777777776554 2334555566655555554433 368888876653
No 229
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.24 E-value=80 Score=14.78 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 044644 8 DQISEFKEAFSLFDKDGDGCITTKELGTVM 37 (183)
Q Consensus 8 ~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l 37 (183)
+.+..+...+. .|.||.+||...-
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~~k 26 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQKK 26 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHHHH
Confidence 34445555443 5778888876644
No 230
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=27.06 E-value=1.5e+02 Score=20.97 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHH
Q 044644 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQD 51 (183)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~ 51 (183)
...++++|..+|..+--..+.+++..++..-|.--....|..
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 356888999999988888899999999988776555544443
No 231
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.77 E-value=3.5e+02 Score=22.01 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=54.6
Q ss_pred CCCCceeHHHHHHHHHH---cC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCC
Q 044644 23 DGDGCITTKELGTVMRS---LG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN 98 (183)
Q Consensus 23 ~~~g~l~~~e~~~~l~~---~~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 98 (183)
.++...+..+|..+... .+ ..++.+.+..|-+.+|-+.+|.|+.+|=-.++..-+........-...|.- .|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cc
Confidence 44555666666554322 22 356778899999999999999999887666665433322222222224442 45
Q ss_pred CcccHHHHHHHHHHh
Q 044644 99 GFISAAELRHVMTNL 113 (183)
Q Consensus 99 g~i~~~e~~~~l~~~ 113 (183)
..|+.+|+.......
T Consensus 116 ~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 116 KHITVEDLWEAWKES 130 (575)
T ss_pred cceeHHHHHHHHHhh
Confidence 679999998887654
No 232
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=26.44 E-value=1.7e+02 Score=18.39 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044644 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (183)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~ 147 (183)
+|.+++..+|...|..++...+..+++.+ ...+.++.+.-..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL-----aGk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL-----NGKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH-----cCCCHHHHHHHHH
Confidence 99999999999999999999999999988 2345677665443
No 233
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=26.26 E-value=3e+02 Score=24.24 Aligned_cols=104 Identities=11% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHhhCCCCCC-cccHHHHHHHHHhhcC----------CCC--cHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 044644 44 PTEAELQDMINEVDADGNG-TIDFPEFLNLMARKMK----------DTD--SEEELKEAFRVFDKDQNGFISAAELRHVM 110 (183)
Q Consensus 44 ~~~~~~~~l~~~~d~~~~g-~v~~~ef~~~~~~~~~----------~~~--~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 110 (183)
++..-+..+|...+..++. .++..+.+..+..... ..+ ....+-.++..||+..+|.|..-+|+-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 3445567777777655443 3455555544322110 000 13456677899999999999999999988
Q ss_pred HHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044644 111 TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (183)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~ 148 (183)
..++.....+.+..+|+.+...+. .+....|--.+..
T Consensus 497 i~lck~~leek~~ylF~~vA~~~s-q~~q~~l~lLL~d 533 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTS-QCDQRRLGLLLHD 533 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchh-hHHHHHHHHHHHH
Confidence 888777777888899999955554 3334444444443
No 234
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=26.19 E-value=1e+02 Score=18.74 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCC
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEVDA 58 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~ 58 (183)
-+.+|+..+-..|......-.+.|+.++|....+.+ .+.++..+=+++++.|..
T Consensus 11 WsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~ 65 (88)
T PF05256_consen 11 WSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEE 65 (88)
T ss_dssp --HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356677776677766554434557777776666555 345666777777777754
No 235
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=25.76 E-value=2.4e+02 Score=19.84 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044644 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMIN 54 (183)
Q Consensus 3 ~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~ 54 (183)
+.|+.+++.+|+..|. +++||.-.|-.++.+.++ +++..++..|.
T Consensus 107 T~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~--LsetQVkvWFQ 151 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLS--LSETQVKVWFQ 151 (197)
T ss_pred cccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcC--CChhHhhhhhh
Confidence 4578899999999986 478998888888888875 45555655553
No 236
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=25.59 E-value=2.2e+02 Score=19.91 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 22 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 22 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
.+.+|+++.+++...++.-+...+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 366899999999888776556678888888765543
No 237
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=25.40 E-value=1.2e+02 Score=16.16 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=17.8
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 044644 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDA 58 (183)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 58 (183)
.|.++..+|+..+ ..+...+..+++.+|.
T Consensus 8 ~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLL-----GLSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHH-----TS-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHH-----CccHHHHHHHHHHHhc
Confidence 5667777777765 4556666666666654
No 238
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=25.12 E-value=2.5e+02 Score=19.68 Aligned_cols=67 Identities=10% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCCC--cccHHHHHHHHHhhcCCC--CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 044644 49 LQDMINEVDADGNG--TIDFPEFLNLMARKMKDT--DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116 (183)
Q Consensus 49 ~~~l~~~~d~~~~g--~v~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 116 (183)
+..+|..+-. .+| .++.+.|+..+......+ ........+=..+-+.....||..||..++..+|+.
T Consensus 21 vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 21 VISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp HHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred HHHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 4455555543 334 677778877665443221 112222222233345557788899999998888843
No 239
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.02 E-value=1.4e+02 Score=16.71 Aligned_cols=15 Identities=7% Similarity=0.284 Sum_probs=5.2
Q ss_pred CCCCHHHHHHHHHhh
Q 044644 42 QNPTEAELQDMINEV 56 (183)
Q Consensus 42 ~~~~~~~~~~l~~~~ 56 (183)
..++.+++..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 13 EDLSREEAKAAFDAI 27 (66)
T ss_dssp ----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 344444444444444
No 240
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=24.73 E-value=2.3e+02 Score=19.22 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=30.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 044644 50 QDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 112 (183)
Q Consensus 50 ~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (183)
..++..-+.+.++.|++..|..++...+. ..+..-|- .+...+|.++++.++..
T Consensus 86 ehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----dWIT~~~L----kh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 86 EHLLGGEDDSTNGLIDIGKFFDILQPKLG-----DWITKNFL----KHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHhcCCcCCcccceeHHHHHHHHHHHhh-----hHHHHHHH----hccchhhHHHHHHHHHH
Confidence 33333333334667888888887765432 22333332 34456777777777644
No 241
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=24.28 E-value=2.1e+02 Score=18.64 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q 044644 84 EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREA 129 (183)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~ 129 (183)
..+..+++.|-. +.|+.+.+..++... |..++..++..+...+
T Consensus 37 ~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 37 DKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 445555555532 336666666666544 2456666655555554
No 242
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=23.99 E-value=2.4e+02 Score=19.10 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 044644 9 QISEFKEAFSLFDKDGDGCITTKELGTVM 37 (183)
Q Consensus 9 e~~~l~~~f~~~d~~~~g~l~~~e~~~~l 37 (183)
.+..+......+|..+.+|+|.++++.++
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHH
Confidence 34455555566666666667777776654
No 243
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=23.65 E-value=1.6e+02 Score=16.92 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=6.5
Q ss_pred CCCCCHHHHHHHHHh
Q 044644 41 GQNPTEAELQDMINE 55 (183)
Q Consensus 41 ~~~~~~~~~~~l~~~ 55 (183)
|...+++.+..+|..
T Consensus 57 G~~~~ediLd~IFs~ 71 (73)
T PF12631_consen 57 GEVVTEDILDNIFSN 71 (73)
T ss_dssp TSS--HHHHHHHHCT
T ss_pred CCCChHHHHHHHHHh
Confidence 444455555555543
No 244
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=23.38 E-value=1.4e+02 Score=16.39 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDA 58 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 58 (183)
|++....-++.+|.... ..+.+...++...| ..+..-+..++..+..
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~~ 48 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLAE 48 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHHH
Confidence 45566666777777664 56788888887766 4566667777766643
No 245
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.36 E-value=5.5e+02 Score=23.13 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC-CCC----CCc
Q 044644 62 GTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD-VDG----DGQ 136 (183)
Q Consensus 62 g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d-~~~----~g~ 136 (183)
..|+..++...+...........-+..-|... .-+.+-++.++|..+...+-..--...+......+- .++ --.
T Consensus 159 ~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~v 237 (1267)
T KOG1264|consen 159 NSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASV 237 (1267)
T ss_pred hheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceE
Confidence 34777777766643322221222233333332 345677999999999887643222222222222111 112 246
Q ss_pred ccHHHHHHHHHHHH
Q 044644 137 INYEEFVKVMMAKR 150 (183)
Q Consensus 137 i~~~ef~~~l~~~~ 150 (183)
|++.+|..++...+
T Consensus 238 V~~~ef~rFL~~~Q 251 (1267)
T KOG1264|consen 238 VYLQEFQRFLIHEQ 251 (1267)
T ss_pred eeHHHHHHHHHhhh
Confidence 99999999987643
No 246
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.35 E-value=2.4e+02 Score=18.97 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHH--hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 044644 88 EAFRVFDKDQNGFISAAELRHVMTN--LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAKRR 151 (183)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~--~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~l~~~~~ 151 (183)
.+|+.++. ||.++..|...+-.- ...+++.+++..++.....-+...+++..|.+.+..+-.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld 97 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLD 97 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 55666654 466776665554322 234577888777776665555556777888777774433
No 247
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=23.34 E-value=1e+02 Score=18.49 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=13.7
Q ss_pred HHHhhCCCCCCcccHHHHHHH
Q 044644 125 MIREADVDGDGQINYEEFVKV 145 (183)
Q Consensus 125 l~~~~d~~~~g~i~~~ef~~~ 145 (183)
+...++.+.+|.|..+-++.|
T Consensus 28 L~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 28 LREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred HHHHhcCCCCCCEeHHHHhcc
Confidence 445566667777777766654
No 248
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=1.1e+02 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.458 Sum_probs=25.9
Q ss_pred CCCcccHHHHHHHHHHHHHhhHHHHhhhhhhhh
Q 044644 133 GDGQINYEEFVKVMMAKRRRKRIEERSSAMENE 165 (183)
Q Consensus 133 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 165 (183)
+.|.-+|++|+..+.++..+.+..++-......
T Consensus 182 N~Gf~~fDdfL~~l~s~kRK~irrERr~v~~~G 214 (387)
T COG3146 182 NSGFQDFDDFLAALSSRKRKNIRRERRAVHKEG 214 (387)
T ss_pred cCCcccHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 589999999999999988888777765554443
No 249
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.51 E-value=3.1e+02 Score=19.89 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCceeHHHHHH--HHHHcCCCCCHHHHHHHHHhhCC
Q 044644 1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGT--VMRSLGQNPTEAELQDMINEVDA 58 (183)
Q Consensus 1 l~~~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~--~l~~~~~~~~~~~~~~l~~~~d~ 58 (183)
|++.|++.|+.-++++...+-...+-.+-...+.. .++.-+..+...++..++..+-.
T Consensus 89 maT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf~q 148 (235)
T KOG4718|consen 89 MATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKFIQ 148 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 57789999999888887666333122222222222 23344556777777777766543
No 250
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=22.32 E-value=1.5e+02 Score=16.04 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHH
Q 044644 24 GDGCITTKELGTVMRSLGQNPTEAELQDMI 53 (183)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~ 53 (183)
..|.|+..||..-+.......+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 379999999988776665555566665554
No 251
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=22.30 E-value=1.7e+02 Score=16.94 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRS 39 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~ 39 (183)
..+.++...+...|... -..|++..+||..++..
T Consensus 9 G~s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 9 GASAEEADGALIQLSQM--LASGKLRGEEINSLLEA 42 (75)
T ss_pred CCCHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHH
Confidence 34566666555555443 24789999999988765
No 252
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=21.97 E-value=1.3e+02 Score=18.39 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCCC-----CCCcccHHHHHHH
Q 044644 106 LRHVMTNLGEKLTDEEVDEMIREADVD-----GDGQINYEEFVKV 145 (183)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~ef~~~ 145 (183)
++.+++.-|..+..+.+..++..++.- .+|.|+.+.+...
T Consensus 14 Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 14 LKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 444444455666666666666655332 3566777766653
No 253
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=21.53 E-value=2.4e+02 Score=23.53 Aligned_cols=48 Identities=13% Similarity=0.398 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 044644 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133 (183)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 133 (183)
...+.-.++..|.|.++.+|..++|..+.+.-...+++.++.++..|.
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcch
Confidence 344455567788888999999999998887666667788887775553
No 254
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=21.52 E-value=2.2e+02 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=7.6
Q ss_pred CCCCHHHHHHHHHhhC
Q 044644 42 QNPTEAELQDMINEVD 57 (183)
Q Consensus 42 ~~~~~~~~~~l~~~~d 57 (183)
..+..+++..++..+.
T Consensus 36 ~s~~~~e~~A~l~Efr 51 (357)
T PLN02508 36 KNLDMAEFEALLQEFK 51 (357)
T ss_pred CchhHHHHHHHHHHHH
Confidence 3344445555555543
No 255
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=21.45 E-value=1.8e+02 Score=16.73 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 044644 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (183)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 129 (183)
.+..+|-.+=.+..+.|+...+..++..+| +++..+...+..+
T Consensus 5 li~tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl 47 (70)
T PF07848_consen 5 LIVTLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRL 47 (70)
T ss_dssp HHHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred ehHHHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 345556555566778999999999998888 7777777666554
No 256
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.42 E-value=2.6e+02 Score=18.69 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHh----------hCCCCCCcccHHHHHHH
Q 044644 106 LRHVMTNLGEKLTDEEVDEMIRE----------ADVDGDGQINYEEFVKV 145 (183)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~l~~~----------~d~~~~g~i~~~ef~~~ 145 (183)
+.+-+.++|..++++++..++.. +-.+..|..+...+..|
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 44445566777777777666611 22345777776666554
No 257
>PRK04387 hypothetical protein; Provisional
Probab=21.17 E-value=2.1e+02 Score=17.51 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhC
Q 044644 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEVD 57 (183)
Q Consensus 5 l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d 57 (183)
-|.+|+..+-..|......-...|+.++|....+.+ .+.++..+=++|++.|.
T Consensus 11 WsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe 64 (90)
T PRK04387 11 WSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFE 64 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 356667666666666654434457777776666655 34566666666666664
No 258
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=20.96 E-value=3e+02 Score=19.08 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=24.5
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcc
Q 044644 28 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64 (183)
Q Consensus 28 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~v 64 (183)
++..+.+.-|...|.+......+.++..+-.++.|.+
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~ 38 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM 38 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce
Confidence 3445666677777887777777766676666666543
No 259
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=20.75 E-value=3.4e+02 Score=19.85 Aligned_cols=48 Identities=10% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 044644 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (183)
Q Consensus 4 ~l~~~e~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (183)
.||..|...+..+|..+|.+ .|.+...-+..-+ ..+.+.+-..++.+.
T Consensus 182 tLSYSEleAve~I~eELdG~-EG~lvASkiADrv-----GITRSVIVNALRKlE 229 (261)
T COG4465 182 TLSYSELEAVEHIFEELDGN-EGLLVASKIADRV-----GITRSVIVNALRKLE 229 (261)
T ss_pred hccHHHHHHHHHHHHhcCCc-cceeeehhhhhhh-----CchHHHHHHHHHHhh
Confidence 46777888888888888754 5666655553321 344455555555443
No 260
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=20.16 E-value=2.2e+02 Score=17.21 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhhCCCCCCccc---HHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC
Q 044644 44 PTEAELQDMINEVDADGNGTID---FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL 117 (183)
Q Consensus 44 ~~~~~~~~l~~~~d~~~~g~v~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 117 (183)
++...+.++..... -..|+ +++....+... ..+.+..+-....-.+...|+.+|+.-++...|.++
T Consensus 14 i~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~~-----l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 14 ITKPAIRRLARRGG---VKRISGGVYDEVRNVLKSY-----LEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred CCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 44444555544432 22344 45555444433 123344444444456677899999999998888553
Done!