BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044647
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPF---DP-NNPILKFQIVLITP 56
GSLL+N RG ++D +A L S HL G +DV T+P DP +P+ +F VL+TP
Sbjct: 232 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 291
Query: 57 HVGGVTEHSYRS 68
H+GG T+ + +
Sbjct: 292 HIGGSTQEAQEN 303
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPF---DP-NNPILKFQIVLITP 56
GSLL+N RG ++D +A L S HL G +DV T+P DP +P+ +F VL+TP
Sbjct: 226 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 285
Query: 57 HVGGVTEHSYRS 68
H+GG T+ + +
Sbjct: 286 HIGGSTQEAQEN 297
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPF---DP-NNPILKFQIVLITP 56
GSLL+N RG ++D +A L S HL G +DV T+P DP +P+ +F VL+TP
Sbjct: 232 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 291
Query: 57 HVGGVTEHSYRS 68
H+GG T+ + +
Sbjct: 292 HIGGSTQEAQEN 303
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPF---DP-NNPILKFQIVLITP 56
GSLL+N RG ++D + L S HL G +DV T+P DP +P+ +F VL+TP
Sbjct: 232 GSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTP 291
Query: 57 HVGGVTEHSYRS 68
H+GG T+ + +
Sbjct: 292 HIGGSTQEAQEN 303
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPF---DP-NNPILKFQIVLITP 56
GSLL+N RG ++D + L S HL G +DV T+P DP +P+ +F VL+TP
Sbjct: 231 GSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTP 290
Query: 57 HVGGVTEHSYRS 68
H+GG T+ + +
Sbjct: 291 HIGGSTQEAQEN 302
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G++L+N RG L+D E + L GHL G GLDV +P P +P+ +ITPH+G
Sbjct: 222 GAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGS 280
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
+ R+T + + +VA++ L G EP N
Sbjct: 281 ----AGRTTRERMAEVAVENLLAV-LEGREPPN 308
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G ++VN RGGL+D +A + GH+ GLDV T+P ++P+ + V++TPH+G
Sbjct: 225 GVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGA 283
Query: 61 VT-EHSYRSTAKVVGDVALQL 80
T E R+ V V L L
Sbjct: 284 STAEAQDRAGTDVAESVRLAL 304
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G ++VN RGGL+D +A + GH+ GLDV T+P ++P+ + V++TPH+G
Sbjct: 224 GVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGA 282
Query: 61 VT-EHSYRSTAKVVGDVALQL 80
T E R+ V V L L
Sbjct: 283 STAEAQDRAGTDVAESVRLAL 303
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGV 61
++L+N RG ++D + L+ G + G GLDV +P ++P+ KF V++TPH+G
Sbjct: 226 AILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAS 285
Query: 62 TEHSYRSTAKVVGDVALQLHAG 83
T + V + +++ G
Sbjct: 286 TVEAQERAGVEVAEKVVKILKG 307
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP----NNPILKFQIVLITP 56
G+ L+N RG +D E +A L+ GHL G +DV +P + P+ + V++TP
Sbjct: 237 GAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTP 296
Query: 57 HVGGVTEHS 65
H+GG TE +
Sbjct: 297 HIGGSTEEA 305
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ +VN RG L D + VA LESG L G DV + +P ++P +TPH+ G
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLR 87
T + A ++ G P+R
Sbjct: 337 TTLTAQARYAAGTREILEXFFEGRPIR 363
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV------AWTKPFDPN---NPILK--- 48
G++LVN RG L+D E V +ESG LGG G DV + K + NP+ +
Sbjct: 227 GAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLV 286
Query: 49 --FQIVLITPHVGGVTEHSYRSTAKV 72
+ VLITPH+G T+ + ++ +V
Sbjct: 287 DLYPRVLITPHLGSYTDEAVKNMVEV 312
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ +VN RG L D + VA LESG L G DV + +P ++P +TPH+ G
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLR 87
T + A ++ G P+R
Sbjct: 337 TTLTAQARYAAGTREILECFFEGRPIR 363
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ +VN RG L D + VA LESG L G DV + +P ++P +TPH+ G
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLR 87
T + A ++ G P+R
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIR 362
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGV 61
++ +NI RG +++ + + L SG + GLDV +P N+P+L + +I PH+G
Sbjct: 240 AVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA 299
Query: 62 TEHSYRSTAKVVGDVALQLHAGTPLRGIEPV 92
T H R+T ++ A L AG LRG EP+
Sbjct: 300 T-HRTRNTMSLLA--ANNLLAG--LRG-EPM 324
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGV 61
++ +NI RG +++ + + L SG + GLDV +P N+P+L + +I PH+G
Sbjct: 238 AVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA 297
Query: 62 TEHSYRSTAKVVGDVALQLHAGTPLRGIEP 91
T H R+T ++ A L AG LRG EP
Sbjct: 298 T-HRTRNTXSLLA--ANNLLAG--LRG-EP 321
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGV 61
++L+NI RG ++D + L+ G + G GLDV +P+ N + K V++TPH+G
Sbjct: 234 AILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNVVLTPHIGSA 292
Query: 62 TEHSYRSTAKVVG 74
+ + A++V
Sbjct: 293 SFGAREGMAELVA 305
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGV 61
++L+NI RG ++D + L+ G + G GLDV +P+ N + K V++TPH+G
Sbjct: 234 AILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNVVLTPHIGSA 292
Query: 62 TEHSYRSTAKVVGDVALQLHAG 83
+ + A++V + G
Sbjct: 293 SFGAREGXAELVAKNLIAFKRG 314
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-PNNPILKFQIVLITPHVG 59
G+ LVN RGGL+D + +A L+ G + G LDV ++PF P+ ++ TPH
Sbjct: 236 GAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTA 295
Query: 60 GVTEHS 65
+E +
Sbjct: 296 WYSEQA 301
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-PNNPILKFQIVLITPHVG 59
G+ LVN RGGL+D + +A L+ G + G LDV ++PF P+ ++ TPH
Sbjct: 252 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 311
Query: 60 GVTEHS 65
+E +
Sbjct: 312 WYSEQA 317
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ LVN RG L D + + LESG L G DV + +P ++P +TPH+ G
Sbjct: 276 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 335
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLR 87
+ + A ++ G P+R
Sbjct: 336 TSLSAQTRYAAGTREILECYFEGRPIR 362
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-PNNPILKFQIVLITPHVG 59
G+ LVN RGGL+D + +A L+ G + G LDV ++PF P+ ++ TPH
Sbjct: 255 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314
Query: 60 GVTEHS 65
+E +
Sbjct: 315 WYSEQA 320
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ LVN RG L D + + LESG L G DV + +P ++P +TPH+ G
Sbjct: 277 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 336
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLR 87
+ + A ++ G P+R
Sbjct: 337 TSLSAQTRYAAGTREILECYFEGRPIR 363
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-PNNPILKFQIVLITPHVG 59
G+ LVN RGGL+D + +A L+ G + G LDV ++PF P+ ++ TPH
Sbjct: 255 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314
Query: 60 GVTEHS 65
+E +
Sbjct: 315 WYSEQA 320
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-PNNPILKFQIVLITPHVG 59
G+ LVN RGGL+D + +A L+ G + G LDV ++PF P+ ++ TPH
Sbjct: 255 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314
Query: 60 GVTEHS 65
+E +
Sbjct: 315 WYSEQA 320
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----AWTKPFDPNN---PILKFQIVL 53
G+LLVN RG ++D V LE G LGG DV W + P +L L
Sbjct: 230 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTL 289
Query: 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
TPH+G + LQ AG R I VN
Sbjct: 290 FTPHIGSAVRAVRLEIERCAAQNILQALAGE--RPINAVN 327
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G L+VN RG +++ + V +ESGH+GG DV +P ++P +TPH G
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 61 VT 62
T
Sbjct: 309 TT 310
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G L+VN RG +++ + V +ESGH+GG DV +P ++P +TPH G
Sbjct: 255 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 314
Query: 61 VT 62
T
Sbjct: 315 TT 316
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----AWTKPFDPNN---PILKFQIVL 53
G+LLVN RG ++D V LE G LGG DV W + P +L L
Sbjct: 229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL 288
Query: 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
TPH+G + LQ AG R I VN
Sbjct: 289 FTPHIGSAVRAVRLEIERCAAQNILQALAGE--RPINAVN 326
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----AWTKPFDPNN---PILKFQIVL 53
G+LLVN RG ++D V LE G LGG DV W + P +L L
Sbjct: 229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL 288
Query: 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
TPH+G + LQ AG R I VN
Sbjct: 289 FTPHIGSAVRAVRLEIERCAAQNILQALAGE--RPINAVN 326
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----AWTKPFDPNN---PILKFQIVL 53
G+LLVN RG ++D V LE G LGG DV W + P +L L
Sbjct: 229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL 288
Query: 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
TPH+G + LQ AG R I VN
Sbjct: 289 FTPHIGSAVRAVRLEIERCAAQNILQALAGE--RPINAVN 326
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----AWTKPFDPNN---PILKFQIVL 53
G+LLVN RG ++D V LE G LGG DV W + P +L L
Sbjct: 229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL 288
Query: 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
TPH+G + LQ AG R I VN
Sbjct: 289 FTPHIGSAVRAVRLEIERCAAQNILQALAGE--RPINAVN 326
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVT 62
+L+NI RG +D + L+ L LDV +P ++P+ + VLITPH+ G
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281
Query: 63 EHSYRST 69
H +R+T
Sbjct: 282 AH-FRAT 287
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+++VN RG L+D E+V LE+G L G DV +P + N + PH+G
Sbjct: 231 GAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 289
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPL 86
+ A D+ L G +
Sbjct: 290 AATQAREDMAHQANDLIDALFGGADM 315
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKP-FDPNNPILKFQIVLITPHVG 59
G++++NI RG L++ + + L S HL GLDV +P DP L + +TPH+G
Sbjct: 256 GAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN--IFLTPHIG 313
Query: 60 GVTEHS 65
T +
Sbjct: 314 SATHET 319
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ ++N+ RG + + L+SG L G LDV +P +P+ + V TPH+
Sbjct: 222 GAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTPHIAA 281
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRG 88
VT + + QL G P+ G
Sbjct: 282 VTRPA--EAIDYISRTITQLEKGEPVTG 307
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPN--NPILKFQIVLITPHV 58
GS +VN RG ++ + + L+SG L GLDV F+PN +++ + V +T H+
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPNVSKELIEMKHVTLTTHI 305
Query: 59 GGVTEHSYRSTAKV-VGDVALQLHAGTPL 86
GGV ++ ++ + ++ L G PL
Sbjct: 306 GGVAIETFHEFERLTMTNIDRFLLQGKPL 334
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVL-----IT 55
G+ LVN RG + E VA LESG L G G DV + +P ++P + +T
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMT 309
Query: 56 PHVGGVT 62
PH G T
Sbjct: 310 PHYSGTT 316
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVL-----IT 55
G+ LVN RG + E VA LESG L G G DV + +P ++P + +T
Sbjct: 251 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMT 310
Query: 56 PHVGGVT 62
PH G T
Sbjct: 311 PHYSGTT 317
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVT 62
+L+NI RG +D + L G LGG GLDV +P P + + V++ PHVG T
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEK-LFGLENVVLLPHVGSGT 304
Query: 63 EHSYRSTAK-VVGDVALQLH-AGTPL 86
+ + A VVG+ L+ H +G PL
Sbjct: 305 VETRKVMADLVVGN--LEAHFSGKPL 328
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----------AWT--KPFDPNNPILK 48
G L+N RG ++D + + + G GLGLDV +T K D N IL+
Sbjct: 223 GVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILE 282
Query: 49 FQI---VLITPHVGGVTEHS----YRSTAKVV 73
V+ITPH+ T+ S T KVV
Sbjct: 283 LACKDNVIITPHIAYYTDKSLERIREETVKVV 314
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G +VN RGG++D + L+SG G LDV +P + ++ + V+ PH+G
Sbjct: 248 GVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGA 306
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGI 89
T+ + + + + + G L G+
Sbjct: 307 STKEAQSRCGEEIAVQFVDMVKGKSLTGV 335
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ LVN RG ++D + + LE G + LDV +P +P L + ++ TPH+ G
Sbjct: 200 GTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP--QADPELAARCLIATPHIAG 257
Query: 61 VT-EHSYRSTAKV 72
+ E R TA++
Sbjct: 258 YSLEGKLRGTAQI 270
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP--NNPILKFQIVLITPHV 58
GS +VN RG ++ + + L+SG L GLDV F+P + +++ + V +T H+
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPQVSKELIEMKHVTLTTHI 305
Query: 59 GGVTEHSYRSTAKV-VGDVALQLHAGTPL 86
GGV ++ ++ + ++ L G PL
Sbjct: 306 GGVAIETFHEFERLTMTNIDRFLLQGKPL 334
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP--NNPILKFQIVLITPHV 58
GS +VN RG ++ + + L+SG L GLDV F+P + +++ + V +T H+
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPQVSKELIEMKHVTLTTHI 305
Query: 59 GGVTEHSYRSTAKV-VGDVALQLHAGTPL 86
GGV ++ ++ + ++ L G PL
Sbjct: 306 GGVAIETFHEFERLTMTNIDRFLLQGKPL 334
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGV 61
+L VN R L++ + L G G +DV T+P + +L+ + + TPH+G V
Sbjct: 245 ALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYV 304
Query: 62 TEHSY 66
SY
Sbjct: 305 ERESY 309
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQI-VLITPHVG 59
G LVNI RG L+D + V ++ G L G DV +P + + K++ ++TPH
Sbjct: 228 GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYA 286
Query: 60 GV 61
G+
Sbjct: 287 GL 288
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQI-----VLITPH 57
++VN+ RG ++D + + L+SG + G GLDV N P ++ + ++ PH
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVF------VNEPAIRSEFHTTPNTVLXPH 306
Query: 58 VGGVTEHSYRSTAKVV 73
G T + + K+V
Sbjct: 307 QGSATVETRXAXGKLV 322
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----------AWTKPFDPNNPILKFQI- 51
++VN+ RG L+D + V L+SG + G +DV W P+ +
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289
Query: 52 --VLITPHVGGVTEHSYRSTAKVVGDVALQL----HAGTPLR 87
VL+TPH T H+ R+ D L+L A TP++
Sbjct: 290 PNVLVTPHTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVK 331
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV--------AWTKPFDPNNP-----ILK 48
+ L+N RG L+D + L+ G + G GLD T D P + K
Sbjct: 230 AYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAK 289
Query: 49 FQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGI 89
V+ITPH TE S R+ ++ L + G R I
Sbjct: 290 MPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSI 330
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNP----ILKFQIVLITPHV 58
++VN R ++ + + Y++ G + DV W +P P +LK + V++T H+
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP--PKEEWELELLKHERVIVTTHI 284
Query: 59 GGVTEHSYRSTAKV 72
G T+ + + A++
Sbjct: 285 GAQTKEAQKRVAEM 298
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----------AWTKPFDPNN---PIL 47
G ++VN RG L+D + V L+SG + G +D W P+ ++
Sbjct: 228 GVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLI 287
Query: 48 KFQIVLITPHVGGVTEHSYRS 68
VL+TPH T H+ R+
Sbjct: 288 DRPNVLVTPHTAFYTTHAVRN 308
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV----------AWTKPFDPNNPILKFQI- 51
++VN+ RG L+D + V L+SG + G +DV W P+ +
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289
Query: 52 --VLITPHVGGVTEHSYRSTAKVVGDVALQL----HAGTPLR 87
VL+TP T H+ R+ D L+L A TP++
Sbjct: 290 PNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVK 331
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPH 57
G++L N+ RG ++ + L +G LG LDV +P ++P+ ++ITPH
Sbjct: 223 GAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPH 279
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNN-------------PIL 47
G++++N R L+D + + L+SG L G+G+D + D N +L
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285
Query: 48 KFQIVLITPHVGGVTE 63
V+++PH+ TE
Sbjct: 286 GMPNVVLSPHIAYYTE 301
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 31 GLDVAWTKPFDPNNPILKF 49
+++ WTKPFD N+P++++
Sbjct: 35 AINLTWTKPFDGNSPLIRY 53
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G++L+N RG ++D + L +G + LDV W D N +L+ + + T H+ G
Sbjct: 203 GAILINACRGPVVDNAALLARLNAGQPLSVVLDV-WEGEPDLNVALLE-AVDIGTSHIAG 260
Query: 61 VT-EHSYRSTAKV 72
T E R T +V
Sbjct: 261 YTLEGKARGTTQV 273
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 31 GLDVAWTKPFDPNNPI-LKFQIV-----LITPHVGGVTEHSYRSTAKVVGDVALQLH 81
GLD+ WT+ F P++ L Q+ PHV + YRS + + L+++
Sbjct: 80 GLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVN 136
>pdb|2XSN|A Chain A, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
pdb|2XSN|B Chain B, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
pdb|2XSN|C Chain C, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
pdb|2XSN|D Chain D, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
Length = 343
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 60 GVTEHSYRSTAKVVGDVALQLHAGTPLRGIE 90
G ++ YR K++ ++A Q G P+ +E
Sbjct: 32 GFSDQVYRQRRKLIAEIAFQYRHGDPIPRVE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.142 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,042,609
Number of Sequences: 62578
Number of extensions: 117247
Number of successful extensions: 468
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 61
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)