Query 044647
Match_columns 93
No_of_seqs 151 out of 1094
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02928 oxidoreductase family 100.0 8.7E-34 1.9E-38 207.8 11.1 93 1-93 255-347 (347)
2 COG0111 SerA Phosphoglycerate 100.0 1.6E-33 3.6E-38 205.0 10.6 88 1-88 226-313 (324)
3 PRK15409 bifunctional glyoxyla 100.0 6.9E-33 1.5E-37 201.6 11.0 89 1-89 229-317 (323)
4 PRK06487 glycerate dehydrogena 100.0 4.6E-32 9.9E-37 196.7 11.1 87 1-87 226-314 (317)
5 PLN03139 formate dehydrogenase 100.0 6.4E-32 1.4E-36 200.4 10.6 92 1-92 284-375 (386)
6 PRK07574 formate dehydrogenase 100.0 7.4E-32 1.6E-36 200.0 10.5 90 1-90 277-366 (385)
7 PRK06932 glycerate dehydrogena 100.0 2.1E-31 4.6E-36 193.1 10.5 85 1-85 226-314 (314)
8 PRK13243 glyoxylate reductase; 100.0 3.3E-31 7.1E-36 193.3 10.3 89 1-90 233-321 (333)
9 PRK08410 2-hydroxyacid dehydro 100.0 6.2E-31 1.3E-35 190.4 10.5 84 1-85 225-311 (311)
10 PLN02306 hydroxypyruvate reduc 100.0 9.7E-31 2.1E-35 194.1 10.8 88 1-89 265-352 (386)
11 PRK15469 ghrA bifunctional gly 100.0 7.8E-31 1.7E-35 190.1 10.0 88 1-90 219-306 (312)
12 PRK11790 D-3-phosphoglycerate 100.0 3E-30 6.4E-35 192.6 10.8 88 1-88 232-323 (409)
13 COG1052 LdhA Lactate dehydroge 100.0 4E-30 8.7E-35 187.3 10.4 90 1-90 229-321 (324)
14 PRK12480 D-lactate dehydrogena 100.0 1E-29 2.2E-34 185.4 9.5 89 1-89 227-328 (330)
15 PRK13581 D-3-phosphoglycerate 100.0 1.3E-29 2.9E-34 193.8 10.3 89 1-90 223-311 (526)
16 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.6E-29 3.4E-34 193.4 10.5 88 1-89 222-309 (525)
17 PRK08605 D-lactate dehydrogena 99.9 1E-27 2.2E-32 174.9 10.5 89 1-89 229-330 (332)
18 KOG0069 Glyoxylate/hydroxypyru 99.9 7E-27 1.5E-31 170.5 9.2 89 1-90 246-334 (336)
19 PRK06436 glycerate dehydrogena 99.9 1.5E-26 3.3E-31 167.2 10.8 82 1-85 202-284 (303)
20 KOG0068 D-3-phosphoglycerate d 99.9 6.4E-27 1.4E-31 170.4 8.7 84 1-84 229-314 (406)
21 PRK00257 erythronate-4-phospha 99.9 1.7E-26 3.8E-31 171.2 10.5 84 1-86 200-283 (381)
22 PRK15438 erythronate-4-phospha 99.9 3.8E-26 8.1E-31 169.2 10.1 80 1-82 200-279 (378)
23 PF02826 2-Hacid_dh_C: D-isome 99.9 2.7E-26 6E-31 154.4 5.2 59 1-59 120-178 (178)
24 KOG0067 Transcription factor C 99.4 7.5E-13 1.6E-17 98.0 5.0 86 1-93 262-349 (435)
25 PF00389 2-Hacid_dh: D-isomer 96.9 0.0018 3.8E-08 41.2 4.1 31 60-90 102-132 (133)
26 PLN02494 adenosylhomocysteinas 96.0 0.0034 7.4E-08 48.5 1.6 38 1-39 334-374 (477)
27 PTZ00075 Adenosylhomocysteinas 95.9 0.013 2.8E-07 45.4 4.2 35 1-42 334-368 (476)
28 TIGR00936 ahcY adenosylhomocys 95.6 0.013 2.9E-07 44.5 3.1 36 1-36 275-311 (406)
29 PRK09344 phosphoenolpyruvate c 85.0 2.5 5.5E-05 33.4 5.3 76 2-80 419-511 (526)
30 PF04577 DUF563: Protein of un 81.1 1.3 2.8E-05 29.4 2.1 52 8-64 114-167 (206)
31 PF03279 Lip_A_acyltrans: Bact 80.2 11 0.00024 26.7 6.8 73 15-87 181-285 (295)
32 PF06345 Drf_DAD: DRF Autoregu 75.1 3.4 7.3E-05 16.7 1.7 11 16-26 4-14 (15)
33 cd00484 PEPCK_ATP Phosphoenolp 73.6 13 0.00029 29.4 5.9 76 2-80 404-496 (508)
34 KOG4022 Dihydropteridine reduc 69.2 35 0.00077 23.6 7.4 75 2-92 5-79 (236)
35 cd07027 RNAP_RPB11_like RPB11 68.8 22 0.00047 21.1 5.9 52 22-81 31-82 (83)
36 PRK01146 DNA-directed RNA poly 66.9 25 0.00053 21.0 6.1 52 22-81 33-84 (85)
37 cd06927 RNAP_L L subunit of Ar 66.6 25 0.00053 20.9 6.1 51 23-81 32-82 (83)
38 COG1866 PckA Phosphoenolpyruva 60.6 43 0.00094 26.5 6.3 77 1-80 420-513 (529)
39 TIGR00224 pckA phosphoenolpyru 60.4 30 0.00064 27.6 5.5 78 2-82 428-518 (532)
40 COG2306 Predicted RNA-binding 57.6 6.8 0.00015 26.8 1.4 21 8-28 118-138 (183)
41 cd08599 PI-PLCc_plant Catalyti 57.0 47 0.001 23.6 5.6 35 3-38 11-54 (228)
42 cd01075 NAD_bind_Leu_Phe_Val_D 56.8 4.7 0.0001 27.5 0.6 53 3-59 88-140 (200)
43 PTZ00311 phosphoenolpyruvate c 56.5 64 0.0014 26.0 6.8 76 2-80 451-544 (561)
44 COG1761 RPB11 DNA-directed RNA 55.2 48 0.001 20.5 5.8 52 23-82 38-89 (99)
45 PLN02597 phosphoenolpyruvate c 55.1 51 0.0011 26.5 6.0 76 2-80 441-533 (555)
46 PF15366 DUF4597: Domain of un 50.2 14 0.00031 20.6 1.7 18 42-59 15-32 (62)
47 cd08591 PI-PLCc_beta Catalytic 48.7 46 0.001 24.0 4.6 36 3-39 11-55 (257)
48 PF01256 Carb_kinase: Carbohyd 45.9 4.9 0.00011 28.4 -0.7 54 4-59 72-125 (242)
49 cd07029 RNAP_I_III_AC19 AC19 s 44.8 66 0.0014 19.1 6.4 52 22-81 31-82 (85)
50 COG0063 Predicted sugar kinase 42.3 42 0.0009 24.5 3.6 43 16-59 119-161 (284)
51 PRK10565 putative carbohydrate 42.2 26 0.00056 27.5 2.7 56 1-59 322-377 (508)
52 TIGR00143 hypF [NiFe] hydrogen 41.3 56 0.0012 26.9 4.5 37 49-85 380-416 (711)
53 cd06926 RNAP_II_RPB11 RPB11 su 40.4 83 0.0018 19.0 5.9 52 23-82 40-91 (93)
54 cd08593 PI-PLCc_delta Catalyti 40.1 67 0.0015 23.2 4.3 35 3-38 11-54 (257)
55 cd08589 PI-PLCc_SaPLC1_like Ca 39.9 95 0.0021 23.2 5.2 70 15-86 47-126 (324)
56 TIGR03035 trp_arylform arylfor 38.1 95 0.0021 21.1 4.7 38 2-40 103-150 (206)
57 cd08630 PI-PLCc_delta3 Catalyt 37.6 80 0.0017 22.8 4.4 35 3-38 11-54 (258)
58 COG4778 PhnL ABC-type phosphon 36.0 17 0.00036 25.5 0.7 30 4-33 160-206 (235)
59 PF11950 DUF3467: Protein of u 34.4 34 0.00073 20.5 1.8 27 49-82 59-85 (92)
60 cd00580 CHMI 5-carboxymethyl-2 34.0 1.1E+02 0.0024 18.6 6.2 27 58-84 68-94 (113)
61 PRK08733 lipid A biosynthesis 33.9 1.6E+02 0.0035 21.1 5.6 22 15-36 184-205 (306)
62 PF03147 FDX-ACB: Ferredoxin-f 33.7 81 0.0018 18.6 3.4 68 13-81 18-89 (94)
63 cd08624 PI-PLCc_beta2 Catalyti 32.1 2E+02 0.0043 20.9 7.6 25 14-39 31-55 (261)
64 cd08629 PI-PLCc_delta1 Catalyt 31.4 1.1E+02 0.0024 22.1 4.3 23 14-37 31-53 (258)
65 cd01318 DHOase_IIb Dihydroorot 31.2 45 0.00098 24.7 2.4 24 13-36 228-251 (361)
66 cd01919 PEPCK Phosphoenolpyruv 29.7 1.7E+02 0.0036 23.4 5.3 79 2-83 412-506 (515)
67 PF13656 RNA_pol_L_2: RNA poly 29.5 1.2E+02 0.0026 17.5 3.8 51 23-81 24-74 (77)
68 PF06903 VirK: VirK protein; 29.3 91 0.002 19.3 3.1 29 12-40 3-31 (100)
69 cd08625 PI-PLCc_beta3 Catalyti 29.2 2.2E+02 0.0048 20.5 7.9 25 14-39 31-55 (258)
70 TIGR00489 aEF-1_beta translati 28.6 1.1E+02 0.0023 18.4 3.3 53 12-66 16-68 (88)
71 cd08557 PI-PLCc_bacteria_like 28.6 1.2E+02 0.0025 21.0 4.0 57 15-85 40-96 (271)
72 PRK06490 glutamine amidotransf 28.3 2E+02 0.0043 20.1 5.1 41 15-57 21-61 (239)
73 TIGR01505 tartro_sem_red 2-hyd 27.5 76 0.0017 22.4 3.0 27 1-27 86-112 (291)
74 cd01817 RGS12_RBD Ubiquitin do 27.4 70 0.0015 18.7 2.2 33 3-36 12-44 (73)
75 COG4252 Predicted transmembran 27.1 1.1E+02 0.0025 23.5 3.9 39 17-55 87-130 (400)
76 PRK05472 redox-sensing transcr 26.6 28 0.0006 23.7 0.5 23 2-24 179-201 (213)
77 PF03480 SBP_bac_7: Bacterial 26.6 2.3E+02 0.005 19.8 5.3 38 2-39 29-67 (286)
78 PRK04323 hypothetical protein; 26.2 91 0.002 19.0 2.7 53 3-57 4-68 (91)
79 PF03880 DbpA: DbpA RNA bindin 25.9 66 0.0014 18.2 2.0 23 3-25 3-25 (74)
80 PTZ00445 p36-lilke protein; Pr 25.7 68 0.0015 22.7 2.3 19 16-34 32-50 (219)
81 KOG3197 Predicted hydrolases o 24.8 1.3E+02 0.0028 21.0 3.5 30 54-84 97-126 (210)
82 COG2236 Predicted phosphoribos 24.3 1.2E+02 0.0026 20.9 3.3 70 3-73 32-110 (192)
83 PRK11559 garR tartronate semia 23.8 1E+02 0.0022 21.8 3.0 28 1-28 89-116 (296)
84 PF14076 DUF4258: Domain of un 22.7 82 0.0018 17.1 2.0 18 9-28 13-30 (73)
85 PLN02228 Phosphoinositide phos 22.4 2.1E+02 0.0045 23.1 4.7 35 3-38 115-158 (567)
86 PRK02769 histidine decarboxyla 22.4 1.7E+02 0.0036 22.0 4.1 33 51-92 347-379 (380)
87 PRK13713 conjugal transfer pro 22.0 94 0.002 19.9 2.2 29 53-81 82-114 (118)
88 PF00281 Ribosomal_L5: Ribosom 21.9 1.3E+02 0.0029 16.3 2.6 22 2-23 10-31 (56)
89 COG1414 IclR Transcriptional r 21.9 2.3E+02 0.0049 19.8 4.5 47 9-55 162-211 (246)
90 PF07994 NAD_binding_5: Myo-in 21.8 52 0.0011 24.1 1.2 30 64-93 125-154 (295)
91 PF13263 PHP_C: PHP-associated 21.8 30 0.00066 18.6 0.0 16 11-26 40-55 (56)
92 cd08626 PI-PLCc_beta4 Catalyti 21.8 1.7E+02 0.0037 21.1 3.8 24 14-38 31-54 (257)
93 cd08594 PI-PLCc_eta Catalytic 21.7 2.2E+02 0.0049 20.2 4.3 77 3-81 11-119 (227)
94 PLN03241 magnesium chelatase s 21.5 3.5E+02 0.0075 24.4 6.1 60 32-91 922-991 (1353)
95 PRK12321 cobN cobaltochelatase 21.4 3.6E+02 0.0079 23.7 6.2 67 14-90 696-771 (1100)
96 PLN02705 beta-amylase 21.3 1.2E+02 0.0026 24.9 3.2 29 9-37 261-292 (681)
97 KOG2749 mRNA cleavage and poly 21.2 2.9E+02 0.0063 21.4 5.1 81 2-84 214-299 (415)
98 TIGR02257 cobalto_cobN cobalto 21.2 3.7E+02 0.0079 23.7 6.2 66 15-90 711-785 (1122)
99 PRK05989 cobN cobaltochelatase 21.2 3.6E+02 0.0078 24.0 6.2 60 31-90 823-891 (1244)
100 cd01518 RHOD_YceA Member of th 21.2 1.3E+02 0.0029 17.3 2.8 27 10-38 1-27 (101)
101 KOG3086 Predicted dioxygenase 21.0 55 0.0012 23.9 1.2 14 50-64 40-53 (296)
102 COG0002 ArgC Acetylglutamate s 20.9 25 0.00054 26.6 -0.6 39 50-88 230-277 (349)
103 smart00200 SEA Domain found in 20.8 2.1E+02 0.0045 17.9 3.7 39 49-87 16-54 (121)
104 cd08558 PI-PLCc_eukaryota Cata 20.7 1.8E+02 0.004 20.6 3.7 24 14-38 31-54 (226)
105 PRK07369 dihydroorotase; Provi 20.6 87 0.0019 23.7 2.2 25 13-37 287-311 (418)
106 PF02196 RBD: Raf-like Ras-bin 20.3 69 0.0015 18.2 1.3 41 3-44 13-56 (71)
107 PF15178 TOM_sub5: Mitochondri 20.3 1.6E+02 0.0035 15.8 3.1 20 62-81 13-32 (51)
108 PLN02230 phosphoinositide phos 20.3 2.4E+02 0.0051 23.0 4.6 35 3-38 124-167 (598)
109 PF01361 Tautomerase: Tautomer 20.1 1.6E+02 0.0034 15.5 3.3 29 59-88 9-37 (60)
110 PF14328 DUF4385: Domain of un 20.1 2.7E+02 0.0058 18.5 4.1 35 54-88 38-72 (145)
111 TIGR00196 yjeF_cterm yjeF C-te 20.1 1.5E+02 0.0032 20.8 3.2 56 2-59 95-150 (272)
No 1
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=8.7e-34 Score=207.85 Aligned_cols=93 Identities=72% Similarity=1.173 Sum_probs=91.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+++||+||||++||++.++|||++|||++|||+||+|.++++++.+.+++|+.+|
T Consensus 255 ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~ 334 (347)
T PLN02928 255 GALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQL 334 (347)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCcccCC
Q 044647 81 HAGTPLRGIEPVN 93 (93)
Q Consensus 81 ~~g~~~~~~~~~n 93 (93)
++|+++.++.|||
T Consensus 335 ~~g~~~~~~~~~~ 347 (347)
T PLN02928 335 HAGRPLTGIEFVN 347 (347)
T ss_pred HCCCCCCceeecC
Confidence 9999999999998
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=205.00 Aligned_cols=88 Identities=32% Similarity=0.648 Sum_probs=85.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+|+||+||||++||++.++|||++|||++|||+||+|.|++.++.+.+++++.+|
T Consensus 226 gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~ 305 (324)
T COG0111 226 GAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRY 305 (324)
T ss_pred CeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCC
Q 044647 81 HAGTPLRG 88 (93)
Q Consensus 81 ~~g~~~~~ 88 (93)
++|+++.+
T Consensus 306 l~g~~~~~ 313 (324)
T COG0111 306 LAGGPVVN 313 (324)
T ss_pred HcCCCCCC
Confidence 99998544
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=6.9e-33 Score=201.56 Aligned_cols=89 Identities=24% Similarity=0.411 Sum_probs=86.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+++||+||||++||++.++||+++|||++|||+||.|.+++.++.+.+++|+.+|
T Consensus 229 ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 308 (323)
T PRK15409 229 SAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDA 308 (323)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HcCCCCCCc
Q 044647 81 HAGTPLRGI 89 (93)
Q Consensus 81 ~~g~~~~~~ 89 (93)
++|+++.+.
T Consensus 309 ~~g~~~~~~ 317 (323)
T PRK15409 309 LQGKVEKNC 317 (323)
T ss_pred HcCCCCCcc
Confidence 999988764
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.98 E-value=4.6e-32 Score=196.69 Aligned_cols=87 Identities=37% Similarity=0.589 Sum_probs=83.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCcccc--CCceEecccCCCCcHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILK--FQIVLITPHVGGVTEHSYRSTAKVVGDVAL 78 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~--~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~ 78 (93)
|++|||+|||++||++||++||++|+++||+||||++||++.++|||+ +|||++|||+||+|.+++.++.+.+++|+.
T Consensus 226 ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~ 305 (317)
T PRK06487 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENAR 305 (317)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999988899995 899999999999999999999999999999
Q ss_pred HHHcCCCCC
Q 044647 79 QLHAGTPLR 87 (93)
Q Consensus 79 ~~~~g~~~~ 87 (93)
+|++|+++.
T Consensus 306 ~~~~g~~~~ 314 (317)
T PRK06487 306 AFFAGKPLR 314 (317)
T ss_pred HHHcCCCCc
Confidence 999998664
No 5
>PLN03139 formate dehydrogenase; Provisional
Probab=99.97 E-value=6.4e-32 Score=200.38 Aligned_cols=92 Identities=30% Similarity=0.445 Sum_probs=87.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+|+||++|||++||++.++|||.+|||++|||+||.|.+++.++.+.+++|+.+|
T Consensus 284 ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~ 363 (386)
T PLN03139 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRY 363 (386)
T ss_pred CeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCcccC
Q 044647 81 HAGTPLRGIEPV 92 (93)
Q Consensus 81 ~~g~~~~~~~~~ 92 (93)
++|++++...+|
T Consensus 364 ~~G~~~~~~~~i 375 (386)
T PLN03139 364 FKGEDFPAQNYI 375 (386)
T ss_pred HcCCCCCCccee
Confidence 999987775543
No 6
>PRK07574 formate dehydrogenase; Provisional
Probab=99.97 E-value=7.4e-32 Score=199.99 Aligned_cols=90 Identities=32% Similarity=0.467 Sum_probs=87.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+|+||++|||++||++.++|||++|||++|||+||+|.+++.++.+.+++|+.+|
T Consensus 277 ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~ 356 (385)
T PRK07574 277 GSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECF 356 (385)
T ss_pred CcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCcc
Q 044647 81 HAGTPLRGIE 90 (93)
Q Consensus 81 ~~g~~~~~~~ 90 (93)
++|+++++..
T Consensus 357 ~~G~~~~~~~ 366 (385)
T PRK07574 357 FEGRPIRDEY 366 (385)
T ss_pred HcCCCCCCCc
Confidence 9999998843
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.97 E-value=2.1e-31 Score=193.06 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=81.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccc----cCCceEecccCCCCcHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPIL----KFQIVLITPHVGGVTEHSYRSTAKVVGDV 76 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~----~~~nvi~TPH~a~~t~e~~~~~~~~~~~~ 76 (93)
|++|||+|||++||++||++||++|+++||+||||++||++.++||| ++|||++|||+||+|.++++++.+.+++|
T Consensus 226 ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~n 305 (314)
T PRK06932 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQN 305 (314)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 48999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 044647 77 ALQLHAGTP 85 (93)
Q Consensus 77 i~~~~~g~~ 85 (93)
+.+|++|++
T Consensus 306 i~~~~~~g~ 314 (314)
T PRK06932 306 IEEFVQQGK 314 (314)
T ss_pred HHHHHhcCC
Confidence 999998764
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.97 E-value=3.3e-31 Score=193.28 Aligned_cols=89 Identities=26% Similarity=0.487 Sum_probs=85.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||+++|++|+|+||+||||++||++ ++|||++|||++|||+||+|.+++.++.+.+++|+.+|
T Consensus 233 ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 311 (333)
T PRK13243 233 TAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAF 311 (333)
T ss_pred CeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred HcCCCCCCcc
Q 044647 81 HAGTPLRGIE 90 (93)
Q Consensus 81 ~~g~~~~~~~ 90 (93)
++|+++.+++
T Consensus 312 ~~g~~~~~~v 321 (333)
T PRK13243 312 KRGEVPPTLV 321 (333)
T ss_pred HcCCCCCccc
Confidence 9999887643
No 9
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.97 E-value=6.2e-31 Score=190.38 Aligned_cols=84 Identities=27% Similarity=0.514 Sum_probs=81.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccC---CceEecccCCCCcHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKF---QIVLITPHVGGVTEHSYRSTAKVVGDVA 77 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~---~nvi~TPH~a~~t~e~~~~~~~~~~~~i 77 (93)
|++|||+|||++||++||++||++|+|+ ||||||++||++.++||+++ |||++|||+||+|.+++.++.+.+++|+
T Consensus 225 ~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl 303 (311)
T PRK08410 225 GAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENI 303 (311)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999 99999999999999999987 8999999999999999999999999999
Q ss_pred HHHHcCCC
Q 044647 78 LQLHAGTP 85 (93)
Q Consensus 78 ~~~~~g~~ 85 (93)
.+|++|++
T Consensus 304 ~~~~~g~~ 311 (311)
T PRK08410 304 KDFLEGGK 311 (311)
T ss_pred HHHHcCCC
Confidence 99999863
No 10
>PLN02306 hydroxypyruvate reductase
Probab=99.97 E-value=9.7e-31 Score=194.11 Aligned_cols=88 Identities=22% Similarity=0.348 Sum_probs=84.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+++||+||||++||+ +++||+++|||++|||+||+|.++++++.+.+++|+.+|
T Consensus 265 ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~ 343 (386)
T PLN02306 265 EAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGK 343 (386)
T ss_pred CeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999996 457899999999999999999999999999999999999
Q ss_pred HcCCCCCCc
Q 044647 81 HAGTPLRGI 89 (93)
Q Consensus 81 ~~g~~~~~~ 89 (93)
++|+++.+.
T Consensus 344 ~~g~~~~~~ 352 (386)
T PLN02306 344 LKGYPVWGD 352 (386)
T ss_pred HcCCCCccc
Confidence 999999883
No 11
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.97 E-value=7.8e-31 Score=190.08 Aligned_cols=88 Identities=31% Similarity=0.466 Sum_probs=83.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+++||++|||++||++.++|||++|||++|||+||.|.+. ++.+.+.+|+++|
T Consensus 219 ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~ 296 (312)
T PRK15469 219 GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQL 296 (312)
T ss_pred CcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999885 5788999999999
Q ss_pred HcCCCCCCcc
Q 044647 81 HAGTPLRGIE 90 (93)
Q Consensus 81 ~~g~~~~~~~ 90 (93)
++|+++.+.+
T Consensus 297 ~~g~~~~~~V 306 (312)
T PRK15469 297 EKGERVCGQV 306 (312)
T ss_pred HcCCCCcccC
Confidence 9999998743
No 12
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.97 E-value=3e-30 Score=192.59 Aligned_cols=88 Identities=28% Similarity=0.504 Sum_probs=84.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCC----CCccccCCceEecccCCCCcHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP----NNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDV 76 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~----~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~ 76 (93)
|++|||+|||++||++||++||++|+++||++|||++||++. ++||+++|||++|||+||+|.+++.++.+.+++|
T Consensus 232 ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~n 311 (409)
T PRK11790 232 GAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGK 311 (409)
T ss_pred CeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999875 4699999999999999999999999999999999
Q ss_pred HHHHHcCCCCCC
Q 044647 77 ALQLHAGTPLRG 88 (93)
Q Consensus 77 i~~~~~g~~~~~ 88 (93)
+.+|++|+++.+
T Consensus 312 l~~~~~~~~~~~ 323 (409)
T PRK11790 312 LVKYSDNGSTLS 323 (409)
T ss_pred HHHHHcCCCcCc
Confidence 999999998877
No 13
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.97 E-value=4e-30 Score=187.26 Aligned_cols=90 Identities=31% Similarity=0.503 Sum_probs=86.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCc---eEecccCCCCcHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQI---VLITPHVGGVTEHSYRSTAKVVGDVA 77 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~n---vi~TPH~a~~t~e~~~~~~~~~~~~i 77 (93)
|++|||||||++||++||++||++|+|+|||+|||+.||.+.++||++++| |++|||+|+.|.|++.+|.+.+++|+
T Consensus 229 ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl 308 (324)
T COG1052 229 GAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENL 308 (324)
T ss_pred CeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999877899998877 99999999999999999999999999
Q ss_pred HHHHcCCCCCCcc
Q 044647 78 LQLHAGTPLRGIE 90 (93)
Q Consensus 78 ~~~~~g~~~~~~~ 90 (93)
..|++|+.+++.+
T Consensus 309 ~~~~~g~~~~~~v 321 (324)
T COG1052 309 EAFFDGGVPPNEV 321 (324)
T ss_pred HHHHcCCCCCCCC
Confidence 9999999998855
No 14
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.96 E-value=1e-29 Score=185.40 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=82.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCC-------------CCCccccCCceEecccCCCCcHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-------------PNNPILKFQIVLITPHVGGVTEHSYR 67 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~-------------~~~~l~~~~nvi~TPH~a~~t~e~~~ 67 (93)
|++|||+|||.+||++||++||++|+++|||||||++||+. ..+||+++|||++|||+|++|.+++.
T Consensus 227 gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~ 306 (330)
T PRK12480 227 GAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQ 306 (330)
T ss_pred CcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHH
Confidence 68999999999999999999999999999999999999952 12379999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCc
Q 044647 68 STAKVVGDVALQLHAGTPLRGI 89 (93)
Q Consensus 68 ~~~~~~~~~i~~~~~g~~~~~~ 89 (93)
++.+.+++|+.+|++|+.+.+.
T Consensus 307 ~~~~~~~~n~~~~~~~~~~~~~ 328 (330)
T PRK12480 307 NLVEGGLNAALSVINTGTCETR 328 (330)
T ss_pred HHHHHHHHHHHHHHhCCCCccc
Confidence 9999999999999999998864
No 15
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.96 E-value=1.3e-29 Score=193.76 Aligned_cols=89 Identities=29% Similarity=0.528 Sum_probs=85.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||+|++|.+++.++.+.+++|+.+|
T Consensus 223 ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 301 (526)
T PRK13581 223 GVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDA 301 (526)
T ss_pred CeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999965 89999999999999999999999999999999999999
Q ss_pred HcCCCCCCcc
Q 044647 81 HAGTPLRGIE 90 (93)
Q Consensus 81 ~~g~~~~~~~ 90 (93)
++|+++.+.+
T Consensus 302 ~~g~~~~~~v 311 (526)
T PRK13581 302 LRGGPVPNAV 311 (526)
T ss_pred HcCCCcCcee
Confidence 9999988743
No 16
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.96 E-value=1.6e-29 Score=193.35 Aligned_cols=88 Identities=32% Similarity=0.553 Sum_probs=84.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||++||++|+++||+||||++||+ .++|||++|||++|||+||+|.+++.++.+.+++|+.+|
T Consensus 222 ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~ 300 (525)
T TIGR01327 222 GVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDA 300 (525)
T ss_pred CeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999995 689999999999999999999999999999999999999
Q ss_pred HcCCCCCCc
Q 044647 81 HAGTPLRGI 89 (93)
Q Consensus 81 ~~g~~~~~~ 89 (93)
++|+++.+.
T Consensus 301 ~~g~~~~~~ 309 (525)
T TIGR01327 301 LKGLPVPNA 309 (525)
T ss_pred HcCCCCCce
Confidence 999988774
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.95 E-value=1e-27 Score=174.88 Aligned_cols=89 Identities=24% Similarity=0.354 Sum_probs=82.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCC--CCCCC-----------ccccCCceEecccCCCCcHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKP--FDPNN-----------PILKFQIVLITPHVGGVTEHSYR 67 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep--~~~~~-----------~l~~~~nvi~TPH~a~~t~e~~~ 67 (93)
|++|||+|||.++|+++|+++|++|+|+||++|||+.|| ++.++ +|+++|||++|||+|++|.++++
T Consensus 229 gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~ 308 (332)
T PRK08605 229 GAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVK 308 (332)
T ss_pred CcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHH
Confidence 689999999999999999999999999999999999998 34443 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCc
Q 044647 68 STAKVVGDVALQLHAGTPLRGI 89 (93)
Q Consensus 68 ~~~~~~~~~i~~~~~g~~~~~~ 89 (93)
++.+.+++|+.+|++|++..+.
T Consensus 309 ~~~~~~~~n~~~~~~g~~~~~~ 330 (332)
T PRK08605 309 NLIVDALDATLEVLQTGTTRLR 330 (332)
T ss_pred HHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999988764
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.94 E-value=7e-27 Score=170.46 Aligned_cols=89 Identities=35% Similarity=0.586 Sum_probs=85.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||+++|+++|++||++|+++||++|||++|| +.++||+.++|+++|||+|+.|.+++.+|++.++.|+.++
T Consensus 246 g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~ 324 (336)
T KOG0069|consen 246 GAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAF 324 (336)
T ss_pred CeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HcCCCCCCcc
Q 044647 81 HAGTPLRGIE 90 (93)
Q Consensus 81 ~~g~~~~~~~ 90 (93)
++|++....+
T Consensus 325 ~~g~~~~~~~ 334 (336)
T KOG0069|consen 325 FSGKPLLTPV 334 (336)
T ss_pred HccCCCCCcC
Confidence 9999887644
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.94 E-value=1.5e-26 Score=167.21 Aligned_cols=82 Identities=20% Similarity=0.377 Sum_probs=76.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC-CCcHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG-GVTEHSYRSTAKVVGDVALQ 79 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a-~~t~e~~~~~~~~~~~~i~~ 79 (93)
|++|||+|||++||++||+++|++|++.||++|||++||++.++ .+|||++|||++ +.|.++++++.+.+++|+.+
T Consensus 202 ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~ 278 (303)
T PRK06436 202 GLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKN 278 (303)
T ss_pred CeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986665 689999999976 58999999999999999999
Q ss_pred HHcCCC
Q 044647 80 LHAGTP 85 (93)
Q Consensus 80 ~~~g~~ 85 (93)
|++|++
T Consensus 279 ~~~g~~ 284 (303)
T PRK06436 279 FFEGKP 284 (303)
T ss_pred HHcCCC
Confidence 999987
No 20
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.94 E-value=6.4e-27 Score=170.37 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=80.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCC--CCccccCCceEecccCCCCcHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP--NNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVAL 78 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~--~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~ 78 (93)
|+.+||+|||.+||++||++||++|+++|||+|||+.||+.. +..|.++|||++|||+|++|.|++.+++..+++++.
T Consensus 229 GVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~ 308 (406)
T KOG0068|consen 229 GVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVS 308 (406)
T ss_pred CcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999654 789999999999999999999999999999999999
Q ss_pred HHHcCC
Q 044647 79 QLHAGT 84 (93)
Q Consensus 79 ~~~~g~ 84 (93)
.|++|.
T Consensus 309 ~~~~~~ 314 (406)
T KOG0068|consen 309 DYINGN 314 (406)
T ss_pred HHhccC
Confidence 999993
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.94 E-value=1.7e-26 Score=171.17 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=79.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||+++|++|++.||+||||++||. .+++|+.. |+++|||+||+|.++..++.+++++++.+|
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~ 277 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRF 277 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999995 67889885 999999999999999999999999999999
Q ss_pred HcCCCC
Q 044647 81 HAGTPL 86 (93)
Q Consensus 81 ~~g~~~ 86 (93)
+.+...
T Consensus 278 ~~~~~~ 283 (381)
T PRK00257 278 FGIPAR 283 (381)
T ss_pred HcCCCc
Confidence 988753
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.93 E-value=3.8e-26 Score=169.24 Aligned_cols=80 Identities=26% Similarity=0.295 Sum_probs=75.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQL 80 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~ 80 (93)
|++|||+|||++||++||+++|++|++.||+||||++||. .+.+|+..++ ++|||+||+|.++..++.+++++++.+|
T Consensus 200 gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~ 277 (378)
T PRK15438 200 GAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKF 277 (378)
T ss_pred CcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999995 6778887665 9999999999999999999999999999
Q ss_pred Hc
Q 044647 81 HA 82 (93)
Q Consensus 81 ~~ 82 (93)
+.
T Consensus 278 ~~ 279 (378)
T PRK15438 278 IG 279 (378)
T ss_pred Hc
Confidence 94
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.93 E-value=2.7e-26 Score=154.45 Aligned_cols=59 Identities=37% Similarity=0.718 Sum_probs=54.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 59 (93)
|++|||+|||++||++||++||++|++.||++|||++||++.++||+++|||++|||+|
T Consensus 120 ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 120 GAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred ceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 68999999999999999999999999999999999999999899999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.36 E-value=7.5e-13 Score=97.98 Aligned_cols=86 Identities=28% Similarity=0.373 Sum_probs=76.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCC-CCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHH
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD-PNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQ 79 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~-~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~ 79 (93)
|+.++|++||.++|+.+|.++|++|++.+++ |.. ...||.+.||.++|||.+++++.+..++.+.++..++.
T Consensus 262 Gaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ 334 (435)
T KOG0067|consen 262 GAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRR 334 (435)
T ss_pred cceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhh
Confidence 6899999999999999999999999999988 322 34688899999999999999999999999999999999
Q ss_pred HHcCCCCCC-cccCC
Q 044647 80 LHAGTPLRG-IEPVN 93 (93)
Q Consensus 80 ~~~g~~~~~-~~~~n 93 (93)
.+.|..+.. .+|||
T Consensus 335 ai~g~ip~~l~~cvn 349 (435)
T KOG0067|consen 335 AITGRIPDSLRNCVN 349 (435)
T ss_pred ccCCCCchhHHHHHh
Confidence 999988766 55554
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=96.90 E-value=0.0018 Score=41.22 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 044647 60 GVTEHSYRSTAKVVGDVALQLHAGTPLRGIE 90 (93)
Q Consensus 60 ~~t~e~~~~~~~~~~~~i~~~~~g~~~~~~~ 90 (93)
|+|.+++.++.+.+++|+.+|++|+++.+++
T Consensus 102 ~~T~e~~~~~~~~~~~ni~~~l~g~~~~n~V 132 (133)
T PF00389_consen 102 GYTDEARERMAEIAAENIERFLNGEPPENVV 132 (133)
T ss_dssp TGBHHHHHHHHHHHHHHHHHHHTTST-TTBS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 6899999999999999999999999999754
No 26
>PLN02494 adenosylhomocysteinase
Probab=96.02 E-value=0.0034 Score=48.50 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=34.3
Q ss_pred CcEEEeccC-CCCCCHHHHHHH--HHhCCceeEEEecCCCCC
Q 044647 1 GSLLVNIVR-GGLLDYEVVAHY--LESGHLGGLGLDVAWTKP 39 (93)
Q Consensus 1 gailIN~aR-g~lvd~~aL~~a--L~~g~i~gaalDV~~~Ep 39 (93)
|++|+|++| +..||+++|.++ ++.+.++ ..+|+|..+-
T Consensus 334 GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 334 NAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred CCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 689999999 689999999998 9999998 9999998753
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.86 E-value=0.013 Score=45.37 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=29.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCC
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP 42 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~ 42 (93)
|++|||+||+ |++.++++|+++. ++|+++.+|...
T Consensus 334 GAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 334 NAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred CcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 6899999999 7889999998754 789999998643
No 28
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.56 E-value=0.013 Score=44.47 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=33.0
Q ss_pred CcEEEeccCCCC-CCHHHHHHHHHhCCceeEEEecCC
Q 044647 1 GSLLVNIVRGGL-LDYEVVAHYLESGHLGGLGLDVAW 36 (93)
Q Consensus 1 gailIN~aRg~l-vd~~aL~~aL~~g~i~gaalDV~~ 36 (93)
|++++|++|+.+ ||.++|.+++.+.+..+..+|+|.
T Consensus 275 GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 275 GAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred CcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 689999999999 999999999988887889999987
No 29
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=85.05 E-value=2.5 Score=33.37 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=46.7
Q ss_pred cEEEeccC----------CCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCce---EecccCCCCcHHHHHH
Q 044647 2 SLLVNIVR----------GGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIV---LITPHVGGVTEHSYRS 68 (93)
Q Consensus 2 ailIN~aR----------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nv---i~TPH~a~~t~e~~~~ 68 (93)
..+|||+= ..+-..-+|++++-+|.+..+- |...|.-.-.--.++|.| ++.|-..|...++++.
T Consensus 419 vylvNTGw~GG~~g~g~ri~~~~Traii~ai~~G~l~~~~---~~~~p~fg~~vP~~~~gv~~~~l~P~~~w~d~~~y~~ 495 (526)
T PRK09344 419 VYLVNTGWTGGPYGTGKRISIKYTRAIINAILDGSLDNAE---TTTDPIFGLAVPTSVPGVDSEILDPRNTWADKAAYDE 495 (526)
T ss_pred EEEEecccccCCCCCCccCCHHHHHHHHHHHhcCCccCCC---ceeCCccCccCCCcCCCCChHhcChhhccCCHHHHHH
Confidence 46888854 4455788999999999987321 111221000101244555 9999999998887755
Q ss_pred HH----HHHHHHHHHH
Q 044647 69 TA----KVVGDVALQL 80 (93)
Q Consensus 69 ~~----~~~~~~i~~~ 80 (93)
.. ++..+|+++|
T Consensus 496 ~a~~La~~f~~nf~~f 511 (526)
T PRK09344 496 KAKKLARLFRENFEKF 511 (526)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 44 4455566665
No 30
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=81.12 E-value=1.3 Score=29.39 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=35.5
Q ss_pred cCCCCCCHHHHHHHHHhCCceeEEEecCCCC--CCCCCCccccCCceEecccCCCCcHH
Q 044647 8 VRGGLLDYEVVAHYLESGHLGGLGLDVAWTK--PFDPNNPILKFQIVLITPHVGGVTEH 64 (93)
Q Consensus 8 aRg~lvd~~aL~~aL~~g~i~gaalDV~~~E--p~~~~~~l~~~~nvi~TPH~a~~t~e 64 (93)
++..+.|+++|.+.|++-. +.+...| ++...-.++..-.++++||-|+.+..
T Consensus 114 ~~R~i~Ne~el~~~l~~~~-----~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~ 167 (206)
T PF04577_consen 114 GSRRILNEDELLEILKKYG-----FEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNL 167 (206)
T ss_pred CCCcCcCHHHHHHHHhhCC-----eEEEeCCCCCHHHHHHHhcCCCEEEecCchHhhee
Confidence 5678999999999888433 3344344 32233356778899999998876543
No 31
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=80.23 E-value=11 Score=26.69 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCceeEEEecCCCCCC-----------C-----------CCCccc------c----CCceEecccCCCCc
Q 044647 15 YEVVAHYLESGHLGGLGLDVAWTKPF-----------D-----------PNNPIL------K----FQIVLITPHVGGVT 62 (93)
Q Consensus 15 ~~aL~~aL~~g~i~gaalDV~~~Ep~-----------~-----------~~~~l~------~----~~nvi~TPH~a~~t 62 (93)
..+++++|++|.+.+...|......- . .+.|++ . .-.+.+.|.+....
T Consensus 181 ~~~~~~~Lk~g~~v~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~r~~~~~~~~~~i~~~~~~~~ 260 (295)
T PF03279_consen 181 IRELIRALKEGGIVGLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAYREPDGSHYRIEIEPPLDFPS 260 (295)
T ss_pred HHHHHHHhccCCEEEEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEEEeCCCCEEEEEEeecccCCc
Confidence 56889999999999999997543320 0 001110 1 12677888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Q 044647 63 EHSYRSTAKVVGDVALQLHAGTPLR 87 (93)
Q Consensus 63 ~e~~~~~~~~~~~~i~~~~~g~~~~ 87 (93)
.+....+.+...+.++++++..|-+
T Consensus 261 ~~~~~~~~~~~~~~lE~~Ir~~P~Q 285 (295)
T PF03279_consen 261 SEDIEELTQRYNDRLEEWIREHPEQ 285 (295)
T ss_pred cchHHHHHHHHHHHHHHHHHcChHh
Confidence 7777788888888899888776644
No 32
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=75.10 E-value=3.4 Score=16.75 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=9.3
Q ss_pred HHHHHHHHhCC
Q 044647 16 EVVAHYLESGH 26 (93)
Q Consensus 16 ~aL~~aL~~g~ 26 (93)
+.|++||++|.
T Consensus 4 dsllealqtg~ 14 (15)
T PF06345_consen 4 DSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHccC
Confidence 67999999885
No 33
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=73.63 E-value=13 Score=29.35 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=46.5
Q ss_pred cEEEeccCC----------CCCCHHHHHHHHHhCCceeEEEecCCCCCCCC-C--CccccCCceEecccCCCCcHHHHHH
Q 044647 2 SLLVNIVRG----------GLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP-N--NPILKFQIVLITPHVGGVTEHSYRS 68 (93)
Q Consensus 2 ailIN~aRg----------~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~-~--~~l~~~~nvi~TPH~a~~t~e~~~~ 68 (93)
.+||||+=- .|=.+-++++|+-+|.+..+ -|...|.-. . ...-..|.-++.|...|...++++.
T Consensus 404 v~LvNTGw~GG~yg~G~Ri~l~~Traiv~a~~~G~l~~~---~~~~~~~fgl~iP~~~~gvp~~~L~P~~~w~d~~~y~~ 480 (508)
T cd00484 404 VWLVNTGWTGGSYGVGKRIPLKYTRAIIDAILSGELNNA---EYEKDPVFNLAIPTSIPGVPSEILNPRNTWADKEAYDE 480 (508)
T ss_pred EEEEecCccCCCCCCCccccHHHHHHHHHHHHcCCccCC---CceECCccCccccccCCCCChhhcCHhhcCCCHHHHHH
Confidence 578888532 23478899999999999532 122222100 0 1122345568999999988888766
Q ss_pred HHHHHH----HHHHHH
Q 044647 69 TAKVVG----DVALQL 80 (93)
Q Consensus 69 ~~~~~~----~~i~~~ 80 (93)
..+.++ +|+++|
T Consensus 481 ~a~~La~~F~~nf~~f 496 (508)
T cd00484 481 TAKKLAKLFIENFKKF 496 (508)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 555444 555555
No 34
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=69.17 E-value=35 Score=23.63 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=55.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 2 ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
-++|=-+||.+ -.+.+++.+.+.-.-+-+|+.++|..+. + |+-|-...+|++. +.+.+++-+.+
T Consensus 5 rVivYGGkGAL--GSacv~~FkannywV~siDl~eNe~Ad~--------s-I~V~~~~swtEQe-----~~v~~~vg~sL 68 (236)
T KOG4022|consen 5 RVIVYGGKGAL--GSACVEFFKANNYWVLSIDLSENEQADS--------S-ILVDGNKSWTEQE-----QSVLEQVGSSL 68 (236)
T ss_pred eEEEEcCcchH--hHHHHHHHHhcCeEEEEEeecccccccc--------e-EEecCCcchhHHH-----HHHHHHHHHhh
Confidence 46677788876 4688999999988889999999997422 2 3445556666654 45677888889
Q ss_pred cCCCCCCcccC
Q 044647 82 AGTPLRGIEPV 92 (93)
Q Consensus 82 ~g~~~~~~~~~ 92 (93)
.|+.++.+-||
T Consensus 69 ~gekvDav~CV 79 (236)
T KOG4022|consen 69 QGEKVDAVFCV 79 (236)
T ss_pred cccccceEEEe
Confidence 99999887765
No 35
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=68.82 E-value=22 Score=21.09 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 22 LESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 22 L~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
++...+..|+.++ .+|+...+++.+.---+....++..+..+.+.+.+..+.
T Consensus 31 ~~~~~V~fAgY~v--------pHPl~~~~~lrI~T~~~~~P~~al~~a~~~l~~~~~~l~ 82 (83)
T cd07027 31 LKDDQVDFARYYI--------KHPVIDKIQIRIQTKSGIKPKDALKRAVNKLSKLYEHLG 82 (83)
T ss_pred hcCCCeeEEEEec--------CCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3556676788777 477777788888777667788888888888887776654
No 36
>PRK01146 DNA-directed RNA polymerase subunit L; Provisional
Probab=66.91 E-value=25 Score=20.96 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 22 LESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 22 L~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
++...+..|+.++ .+|+...+++.+.-.-+....++..+..+.+.+.+..|.
T Consensus 33 ~~~~~V~fAgY~v--------pHPl~~~~~lrIqt~~~~~p~~al~~a~~~L~~~~~~~~ 84 (85)
T PRK01146 33 LEDPGVEAASYDI--------DHPLISNPVLKIKTDGGIDPLEALKEAAKRIIDLCDEFL 84 (85)
T ss_pred hcCCCeeEEEeec--------CCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3456666688777 477777888877766566777888888888777776664
No 37
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=66.58 E-value=25 Score=20.86 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=37.7
Q ss_pred HhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 23 ESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 23 ~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
+..++..|+.++ .+|+...+++.+.---+....++..+..+.+.+.+..|.
T Consensus 32 ~~~~V~fAgY~v--------pHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~~~ 82 (83)
T cd06927 32 RDPGVKVASYDI--------EHPLLSNPVLKIKTDGGVDPLEALKEAAKRLIDLCEEFL 82 (83)
T ss_pred cCCCeEEEEeec--------CCCCCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 446777788887 477777788877766556777888888888887777664
No 38
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=60.58 E-value=43 Score=26.48 Aligned_cols=77 Identities=14% Similarity=0.068 Sum_probs=46.4
Q ss_pred CcEEEecc----------CCCCCCHHHHHHHHHhCCceeEEE--e-cCCCCCCCCCCccccCCceEecccCCCCcHHHHH
Q 044647 1 GSLLVNIV----------RGGLLDYEVVAHYLESGHLGGLGL--D-VAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYR 67 (93)
Q Consensus 1 gailIN~a----------Rg~lvd~~aL~~aL~~g~i~gaal--D-V~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~ 67 (93)
.++||||+ |=.+=.+.+|++|+.+|.+..+-. | .|.-+= | -.+=..+--++-|--.|.....+.
T Consensus 420 ~vyLvNTGWtGg~yg~GkRi~ik~TRall~a~l~G~l~nae~~~d~~f~l~i-P--~~~pGV~~~ilnP~~tw~dk~~y~ 496 (529)
T COG1866 420 NVYLVNTGWTGGAYGTGKRIPIKYTRALLDAILDGSLENAETKTDPIFGLAI-P--VALPGVDSDILNPRNTWADKAAYD 496 (529)
T ss_pred cEEEEecCccCCCCCCccccCHHHHHHHHHHHhccccccceeeecccccccc-c--ccCCCCCccccChhhhhccHHHHH
Confidence 36899985 445668899999999988864321 1 111110 1 112234566888988888877765
Q ss_pred HHH----HHHHHHHHHH
Q 044647 68 STA----KVVGDVALQL 80 (93)
Q Consensus 68 ~~~----~~~~~~i~~~ 80 (93)
..+ .++++|+..|
T Consensus 497 ~~a~~La~~F~~NF~k~ 513 (529)
T COG1866 497 EKARRLAKLFIENFKKY 513 (529)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 544 4444555544
No 39
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=60.38 E-value=30 Score=27.61 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=49.3
Q ss_pred cEEEecc------CCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCC---CccccCCceEecccCCCCcHHHHHHH---
Q 044647 2 SLLVNIV------RGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPN---NPILKFQIVLITPHVGGVTEHSYRST--- 69 (93)
Q Consensus 2 ailIN~a------Rg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~---~~l~~~~nvi~TPH~a~~t~e~~~~~--- 69 (93)
.+||||+ |=.|=.+-++++|+-+|.+..+ -|...|.-.- ...-..|.-++.|.-.|..+++++..
T Consensus 428 v~LvNTGw~G~G~Ri~l~~TRaiv~ail~G~l~~~---~~~~~~~fgl~iP~~~pgvp~~iL~Pr~~W~d~~~y~~~a~~ 504 (532)
T TIGR00224 428 AYLVNTGWNGTGKRISIKDTRAIIDAILDGSLENA---EMFTLPIFNLAIPTELPGVDTKILDPRNTYASKEQWQEKAET 504 (532)
T ss_pred EEEEecCcccCCcEecHHHHHHHHHHHhcCCccCC---CceECCccCccccccCCCCChhhcCHhhccCCHHHHHHHHHH
Confidence 4788884 4445578899999999999744 1223331100 11223345589999999888887654
Q ss_pred -HHHHHHHHHHHHc
Q 044647 70 -AKVVGDVALQLHA 82 (93)
Q Consensus 70 -~~~~~~~i~~~~~ 82 (93)
+.+..+|+++|..
T Consensus 505 La~~F~~Nf~~f~~ 518 (532)
T TIGR00224 505 LANLFVDNFKKYAD 518 (532)
T ss_pred HHHHHHHHHHhhcc
Confidence 4555567776643
No 40
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=57.61 E-value=6.8 Score=26.79 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.8
Q ss_pred cCCCCCCHHHHHHHHHhCCce
Q 044647 8 VRGGLLDYEVVAHYLESGHLG 28 (93)
Q Consensus 8 aRg~lvd~~aL~~aL~~g~i~ 28 (93)
+-.+++|++.|..||+.|.|.
T Consensus 118 ge~el~DeDEL~~Al~~GlIT 138 (183)
T COG2306 118 GEAELLDEDELEDALRYGLIT 138 (183)
T ss_pred CCeEEecHHHHHHHHHcCCCC
Confidence 445789999999999999873
No 41
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=56.97 E-value=47 Score=23.55 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=25.1
Q ss_pred EEEeccC-----CCCC----CHHHHHHHHHhCCceeEEEecCCCC
Q 044647 3 LLVNIVR-----GGLL----DYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 3 ilIN~aR-----g~lv----d~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
++||.|+ |..+ ..+++++||+.|-= ..-||+|+.+
T Consensus 11 YfI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR-cvElD~Wdg~ 54 (228)
T cd08599 11 YFIFSSHNSYLTGNQLSSRSSTAPIIEALLRGCR-VIELDLWPGG 54 (228)
T ss_pred hEEeccccccccCCccCCccCHHHHHHHHHhCCC-EEEEEeecCC
Confidence 5677776 3322 45789999988754 5999999874
No 42
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=56.76 E-value=4.7 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=36.5
Q ss_pred EEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC
Q 044647 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59 (93)
Q Consensus 3 ilIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 59 (93)
++++++++.+++++.+ +.|+.+.+.+.+-+.+.. | .....+.-..+++-|.+.
T Consensus 88 v~vp~A~~~~I~~~~~-~~l~~~~v~~~AN~~~~~-~--~~~~~L~~~Gi~~~Pd~~ 140 (200)
T cd01075 88 VFAPCALGGVINDDTI-PQLKAKAIAGAANNQLAD-P--RHGQMLHERGILYAPDYV 140 (200)
T ss_pred EEEecccccccCHHHH-HHcCCCEEEECCcCccCC-H--hHHHHHHHCCCEEeCcee
Confidence 5789999999999988 667777777777665543 1 223455556777777443
No 43
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=56.55 E-value=64 Score=25.98 Aligned_cols=76 Identities=12% Similarity=-0.008 Sum_probs=45.9
Q ss_pred cEEEeccCC-----------CCCCHHHHHHHHHhCCceeEEEecCCCCCCCCC---CccccCCceEecccCCCCcHHHHH
Q 044647 2 SLLVNIVRG-----------GLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPN---NPILKFQIVLITPHVGGVTEHSYR 67 (93)
Q Consensus 2 ailIN~aRg-----------~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~---~~l~~~~nvi~TPH~a~~t~e~~~ 67 (93)
.+||||+=- .|=.+-++++|+-+|.+..+- |...|.-.- ...-..|.=++.|--.|...++++
T Consensus 451 v~LvNTGw~GG~yg~~G~Ri~l~~TRaiv~ail~G~l~~~~---~~~~p~Fgl~iP~~~pgVp~eiL~Pr~~w~d~~ayd 527 (561)
T PTZ00311 451 VWLLNTGWIGGSYGSGGKRMPLKYTRAIIDAIHDGELKKAE---YEKFPIFGLQIPKSCAGVPSELLDPRNAWKDKAAFD 527 (561)
T ss_pred EEEeecCccCCcCCCCCcccCHHHHHHHHHHHhcCCccCCc---eeECCccCccccccCCCCChhhcCHhhcCCCHHHHH
Confidence 478888432 222688999999999994221 222221000 112233455899999998888876
Q ss_pred HHHH----HHHHHHHHH
Q 044647 68 STAK----VVGDVALQL 80 (93)
Q Consensus 68 ~~~~----~~~~~i~~~ 80 (93)
...+ +..+|+++|
T Consensus 528 ~~a~~La~~F~~nf~~f 544 (561)
T PTZ00311 528 KQLKELAAKFQKNFKKY 544 (561)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 6544 445566665
No 44
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=55.19 E-value=48 Score=20.48 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=37.5
Q ss_pred HhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 044647 23 ESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHA 82 (93)
Q Consensus 23 ~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~ 82 (93)
+..++..|+.++ .||+.+.|++-+.---+-...++..+..+.+.+.+..+..
T Consensus 38 ~d~~V~~a~Y~i--------~HP~~~~~~i~Ikt~~~~dp~~aL~~A~~~i~~~~~~l~~ 89 (99)
T COG1761 38 KDEDVEFAAYSI--------PHPLIDNPKIRIKTKGGVDPKEALKRAARKILKDLEELLD 89 (99)
T ss_pred CCCCeeEEEEeC--------CCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777 5777788888776665557788888888887777766654
No 45
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=55.10 E-value=51 Score=26.47 Aligned_cols=76 Identities=17% Similarity=0.070 Sum_probs=46.0
Q ss_pred cEEEeccC----------CCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCC---CccccCCceEecccCCCCcHHHHHH
Q 044647 2 SLLVNIVR----------GGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPN---NPILKFQIVLITPHVGGVTEHSYRS 68 (93)
Q Consensus 2 ailIN~aR----------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~---~~l~~~~nvi~TPH~a~~t~e~~~~ 68 (93)
.+||||+= =.|=.+.++++|+-+|.+..+- |...|.-.- ...-..|.=++.|-..|...++++.
T Consensus 441 vyLvNTGw~GG~yg~G~Ri~l~~TRaiv~ail~G~l~~~~---~~~~p~Fgl~iP~~~~gVp~~iL~Pr~~w~d~~~yd~ 517 (555)
T PLN02597 441 AWLVNTGWSGGSYGVGKRMSLAYTRKIIDAIHSGSLLNAE---YVKTPIFGLEVPTEIEGVPSEILDPENTWSDKKAYDE 517 (555)
T ss_pred EEEEecCccCCCCCCcceechHHHHHHHHHHhcCCccCCc---ceECCccCccccccCCCCChhhcChhhcCCCHHHHHH
Confidence 47888842 2344778999999999984221 222221000 1122334558999999988887755
Q ss_pred H----HHHHHHHHHHH
Q 044647 69 T----AKVVGDVALQL 80 (93)
Q Consensus 69 ~----~~~~~~~i~~~ 80 (93)
. +.+..+|+++|
T Consensus 518 ~a~~La~~F~~Nf~kf 533 (555)
T PLN02597 518 TLNKLAGLFKKNFEVF 533 (555)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4 45555666666
No 46
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=50.21 E-value=14 Score=20.60 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=13.6
Q ss_pred CCCccccCCceEecccCC
Q 044647 42 PNNPILKFQIVLITPHVG 59 (93)
Q Consensus 42 ~~~~l~~~~nvi~TPH~a 59 (93)
...+-++.||+|+||-.-
T Consensus 15 L~dKhLdVPnIIiTPPTP 32 (62)
T PF15366_consen 15 LSDKHLDVPNIIITPPTP 32 (62)
T ss_pred ccccccCCCceEecCCCC
Confidence 345667889999999754
No 47
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=48.69 E-value=46 Score=24.04 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=25.6
Q ss_pred EEEeccC-----C----CCCCHHHHHHHHHhCCceeEEEecCCCCC
Q 044647 3 LLVNIVR-----G----GLLDYEVVAHYLESGHLGGLGLDVAWTKP 39 (93)
Q Consensus 3 ilIN~aR-----g----~lvd~~aL~~aL~~g~i~gaalDV~~~Ep 39 (93)
++||+|+ | +-=..++..+||..| .+..-||+|+.+.
T Consensus 11 YfI~SSHNTYL~g~Ql~g~ss~e~y~~aL~~G-cRcvElD~Wdg~~ 55 (257)
T cd08591 11 YFINSSHNTYLTGRQFGGKSSVEMYRQVLLSG-CRCIELDCWDGKG 55 (257)
T ss_pred heeecccCccccCCcccCcccHHHHHHHHHhC-CcEEEEEeecCCC
Confidence 4677776 1 123578999999976 4459999998763
No 48
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=45.93 E-value=4.9 Score=28.40 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=25.0
Q ss_pred EEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC
Q 044647 4 LVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59 (93)
Q Consensus 4 lIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 59 (93)
+|=-+=|.--....+++.+.+...- ..+|.--=.-+. ..+.....++++|||.+
T Consensus 72 ~iGPGlg~~~~~~~~~~~~~~~~~p-~VlDADaL~~l~-~~~~~~~~~~IlTPH~g 125 (242)
T PF01256_consen 72 VIGPGLGRDEETEELLEELLESDKP-LVLDADALNLLA-ENPKKRNAPVILTPHPG 125 (242)
T ss_dssp EE-TT-SSSHHHHHHHHHHHHHCST-EEEECHHHHCHH-HCCCCSSSCEEEE-BHH
T ss_pred EeecCCCCchhhHHHHHHHHhhcce-EEEehHHHHHHH-hccccCCCCEEECCCHH
Confidence 3333333332334555555544443 888862111000 01134457999999965
No 49
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=44.81 E-value=66 Score=19.07 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 22 LESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 22 L~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
++...+..|+-+| .+|+...+++.+.-.-+....++..+..+.+.+.+..+.
T Consensus 31 ~~~p~V~fagY~v--------pHPl~~~~~lriqT~~~~~p~~al~~a~~~l~~~~~~~~ 82 (85)
T cd07029 31 MKNPEVEFCGYSI--------PHPSENKINLRIQTKGGEPAVDVLKKGLEDLEQICDHIL 82 (85)
T ss_pred hhCCCceEEeecc--------cCCCCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456666788777 477777788888777667788888888887777766654
No 50
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=42.30 E-value=42 Score=24.48 Aligned_cols=43 Identities=28% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC
Q 044647 16 EVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59 (93)
Q Consensus 16 ~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 59 (93)
+++.+.|+... .-+.+|.--=.-+.....+.....+++|||-+
T Consensus 119 ~~~~~~l~~~~-~p~ViDADaL~~la~~~~~~~~~~~VlTPH~g 161 (284)
T COG0063 119 EALKELLSSDL-KPLVLDADALNLLAELPDLLDERKVVLTPHPG 161 (284)
T ss_pred HHHHHHHhccC-CCEEEeCcHHHHHHhCcccccCCcEEECCCHH
Confidence 34444445443 44777763211111111222233499999965
No 51
>PRK10565 putative carbohydrate kinase; Provisional
Probab=42.17 E-value=26 Score=27.46 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=26.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 59 (93)
++++||.+=|.--....+.+.+++...- ..||.---.-+. .++.. ..+.++|||.+
T Consensus 322 ~a~viGpGlg~~~~~~~~~~~~~~~~~P-~VLDAdaL~ll~-~~~~~-~~~~VLTPh~g 377 (508)
T PRK10565 322 DVVVIGPGLGQQEWGKKALQKVENFRKP-MLWDADALNLLA-INPDK-RHNRVITPHPG 377 (508)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEchHHHHHh-hCccc-cCCeEECCCHH
Confidence 3577887666521122333555543332 677752111000 00001 12679999965
No 52
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=41.33 E-value=56 Score=26.90 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=29.7
Q ss_pred CCceEecccCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 044647 49 FQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 85 (93)
Q Consensus 49 ~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~~ 85 (93)
-.++++|||+|-.......+..+..++.+.+++.-+|
T Consensus 380 ~~~~~~S~~iGDl~~~~~~~~~~~~~~~~~~l~~~~p 416 (711)
T TIGR00143 380 GGQAYLSQHIGDLSVYETYKFFKEALNFFLRIYDFEP 416 (711)
T ss_pred CCEEEEcCcccCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4589999999988777777777888888888877553
No 53
>cd06926 RNAP_II_RPB11 RPB11 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB11 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association.
Probab=40.43 E-value=83 Score=18.95 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=35.5
Q ss_pred HhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 044647 23 ESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHA 82 (93)
Q Consensus 23 ~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~ 82 (93)
+...+..|+.++ .+|+...+.+.+.-.-+....++..+..+.+.+.+..+.+
T Consensus 40 ~~~~V~fagY~v--------pHPl~~~~~l~i~t~~~~~p~~al~~a~~~l~~~~~~~~~ 91 (93)
T cd06926 40 KDPNVLFAGYKV--------PHPLEHKIELRIQTDGSITPKEALKNAITDLISELSLLKE 91 (93)
T ss_pred cCCCeeEEeecc--------CCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 445555577666 3666666667666665567788888888888887777654
No 54
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=40.15 E-value=67 Score=23.18 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=25.1
Q ss_pred EEEecc-----CCCCC----CHHHHHHHHHhCCceeEEEecCCCC
Q 044647 3 LLVNIV-----RGGLL----DYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 3 ilIN~a-----Rg~lv----d~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
++||+| -|.-+ ..++..+||+.| .+..-+|+|+.+
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~G-cRcvElD~wdg~ 54 (257)
T cd08593 11 YFIASSHNTYLLEDQLKGPSSTEAYIRALKKG-CRCVELDCWDGP 54 (257)
T ss_pred heeecccCccccCCcccCCccHHHHHHHHHhC-CcEEEEEeecCC
Confidence 466666 34333 678999999976 455999999863
No 55
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=39.85 E-value=95 Score=23.19 Aligned_cols=70 Identities=19% Similarity=0.113 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCceeEEEecCCCCC----------CCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 044647 15 YEVVAHYLESGHLGGLGLDVAWTKP----------FDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGT 84 (93)
Q Consensus 15 ~~aL~~aL~~g~i~gaalDV~~~Ep----------~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~ 84 (93)
...|.++|+.| ++..-||||...- .+...+.+..|.+-+ -|+...-..........+.+.|+.|+...
T Consensus 47 ~~~i~~QLd~G-vR~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V-~H~~~~d~~t~C~~l~~cL~~Ik~W~~an 124 (324)
T cd08589 47 HPPLADQLDSG-VRQLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKV-SHIPDLDNRNNCVTLEDCLDDVRAWSDAH 124 (324)
T ss_pred CccHHHHHhhC-cceEEEEEeecCCcccccccccccccccccccCCCeEE-EcCCCcCCCCChhhHHHHHHHHHHHHHhC
Confidence 35789999998 8889999995431 112223334444433 24322211111114467888999998754
Q ss_pred CC
Q 044647 85 PL 86 (93)
Q Consensus 85 ~~ 86 (93)
|-
T Consensus 125 P~ 126 (324)
T cd08589 125 PG 126 (324)
T ss_pred CC
Confidence 43
No 56
>TIGR03035 trp_arylform arylformamidase. One of several pathways of tryptophan degradation is as follows: tryptophan 2,3-dioxygenase (1.13.11.11) uses 02 to convert Trp to L-formylkynurenine. Arylformamidase (3.5.1.9) hydrolyzes the product to L-kynurenine and formate. Kynureninase (3.7.1.3) hydrolyzes L-kynurenine to anthranilate plus alanine. Members of the seed alignment for this model are bacterial predicted metal-dependent hydrolases. All are supported as arylformamidase (3.5.1.9) by an operon structure in which kynureninase and/or tryptophan 2,3-dioxygenase genes are adjacent. The members from Bacillus cereus, Pseudomonas aeruginosa and Ralstonia metallidurans were characterized. An example from Pseudomonas fluorescens is given the gene symbol qbsH instead of kynB because of its role in quinolobactin biosynthesis, which begins with tryptophan. All members of this family should be arylformamidase (3.5.1.9).
Probab=38.14 E-value=95 Score=21.14 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=27.1
Q ss_pred cEEEeccC----------CCCCCHHHHHHHHHhCCceeEEEecCCCCCC
Q 044647 2 SLLVNIVR----------GGLLDYEVVAHYLESGHLGGLGLDVAWTKPF 40 (93)
Q Consensus 2 ailIN~aR----------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~ 40 (93)
.++++|++ ..=+..+ .+++|.++.+++.++|.+..++.
T Consensus 103 ~vl~~Tg~~~~~~~y~~~~Pgls~e-aa~~L~e~~i~~iG~D~~s~d~~ 150 (206)
T TIGR03035 103 RVLLRTYLPAPANAWPDDFPAVAPD-TIELLAEKGVRLIGIDTPSVDPL 150 (206)
T ss_pred EEEEECCCCCCccccCCCCCeeCHH-HHHHHHHCCCeEEEECCCccCCC
Confidence 47888874 1233444 47788889999999999877764
No 57
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=37.62 E-value=80 Score=22.84 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=25.0
Q ss_pred EEEeccC-----CC-C---CCHHHHHHHHHhCCceeEEEecCCCC
Q 044647 3 LLVNIVR-----GG-L---LDYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 3 ilIN~aR-----g~-l---vd~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
++||+|+ |. + -..++..+||..| .+..-+|+|+.+
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~G-cRcvElD~wdg~ 54 (258)
T cd08630 11 YFISSSHNTYLTDSQIGGPSSTEAYVRAFAQG-CRCVELDCWEGP 54 (258)
T ss_pred heeecccCccccCCcccCcccHHHHHHHHHcC-CcEEEEEeecCC
Confidence 4677766 11 1 3678999999876 456999999854
No 58
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.00 E-value=17 Score=25.47 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=19.7
Q ss_pred EEeccCCCCCCHH-----------------HHHHHHHhCCceeEEEe
Q 044647 4 LVNIVRGGLLDYE-----------------VVAHYLESGHLGGLGLD 33 (93)
Q Consensus 4 lIN~aRg~lvd~~-----------------aL~~aL~~g~i~gaalD 33 (93)
=||++||-++|.. ..++.+.+.|-+|+|+=
T Consensus 160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlv 206 (235)
T COG4778 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206 (235)
T ss_pred ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEE
Confidence 3799999888754 44556666666665543
No 59
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=34.40 E-value=34 Score=20.54 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=20.6
Q ss_pred CCceEecccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 044647 49 FQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHA 82 (93)
Q Consensus 49 ~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~ 82 (93)
..+|++||..| .++...+.++|.+|-+
T Consensus 59 ~sRVimsP~~A-------KrL~~aL~~~l~~YE~ 85 (92)
T PF11950_consen 59 SSRVIMSPQHA-------KRLLKALQQNLQKYEQ 85 (92)
T ss_pred EEEEEeCHHHH-------HHHHHHHHHHHHHHHH
Confidence 34789988644 7888888888888863
No 60
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=34.03 E-value=1.1e+02 Score=18.61 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 044647 58 VGGVTEHSYRSTAKVVGDVALQLHAGT 84 (93)
Q Consensus 58 ~a~~t~e~~~~~~~~~~~~i~~~~~g~ 84 (93)
.+|-|.|..+++.+.+.+.+.+.+...
T Consensus 68 ~~GRs~eqK~~l~~~i~~~l~~~~~~~ 94 (113)
T cd00580 68 LAGRSEEQKQELSEALLAALRAHLAPV 94 (113)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 468999999999999999999987644
No 61
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=33.89 E-value=1.6e+02 Score=21.15 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCceeEEEecCC
Q 044647 15 YEVVAHYLESGHLGGLGLDVAW 36 (93)
Q Consensus 15 ~~aL~~aL~~g~i~gaalDV~~ 36 (93)
..+++++|++|.+.|...|-..
T Consensus 184 ~r~~~kaLk~g~~v~il~Dq~~ 205 (306)
T PRK08733 184 LRATIKHLKRGGFLWYAPDQDM 205 (306)
T ss_pred HHHHHHHHhCCCeEEEeCCCCC
Confidence 5778999999999999999653
No 62
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=33.74 E-value=81 Score=18.58 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHh---CCce-eEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 13 LDYEVVAHYLES---GHLG-GLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 13 vd~~aL~~aL~~---g~i~-gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
+...++.+.+.+ +.+. -..+|+|..+..++...-+. =++.+.++-...|.+....+.+.+.+.+.+-+
T Consensus 18 ~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~-~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~ 89 (94)
T PF03147_consen 18 VPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLT-YRLTYQSPDRTLTDEEVNEIHDKIIKALEKKL 89 (94)
T ss_dssp S-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEE-EEEEE--SSS---HHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 455666666655 2222 36789999887654432222 26778888888899988888888888876544
No 63
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=32.13 E-value=2e+02 Score=20.87 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhCCceeEEEecCCCCC
Q 044647 14 DYEVVAHYLESGHLGGLGLDVAWTKP 39 (93)
Q Consensus 14 d~~aL~~aL~~g~i~gaalDV~~~Ep 39 (93)
..++.++||..| .+..-+|+|+.++
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdg~~ 55 (261)
T cd08624 31 SPEMYRQVLLSG-CRCVELDCWKGKP 55 (261)
T ss_pred CHHHHHHHHHcC-CcEEEEEecCCCC
Confidence 468889999966 4569999998864
No 64
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=31.41 E-value=1.1e+02 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.060 Sum_probs=19.1
Q ss_pred CHHHHHHHHHhCCceeEEEecCCC
Q 044647 14 DYEVVAHYLESGHLGGLGLDVAWT 37 (93)
Q Consensus 14 d~~aL~~aL~~g~i~gaalDV~~~ 37 (93)
..++..+||..| .+..-+|+|+.
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdg 53 (258)
T cd08629 31 STEAYIRALCKG-CRCLELDCWDG 53 (258)
T ss_pred CHHHHHHHHHhC-CcEEEEEeecC
Confidence 678999999976 45599999986
No 65
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=31.24 E-value=45 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhCCceeEEEecCC
Q 044647 13 LDYEVVAHYLESGHLGGLGLDVAW 36 (93)
Q Consensus 13 vd~~aL~~aL~~g~i~gaalDV~~ 36 (93)
-|.++|.++|++|.+-..+.|-..
T Consensus 228 ~d~~aL~~~l~~G~id~i~SDh~P 251 (361)
T cd01318 228 EDRKALLQALADGRIDVIASDHAP 251 (361)
T ss_pred HHHHHHHHHHhCCCCCEEeeCCCC
Confidence 578999999999999999999653
No 66
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=29.65 E-value=1.7e+02 Score=23.35 Aligned_cols=79 Identities=10% Similarity=-0.042 Sum_probs=43.1
Q ss_pred cEEEeccCC---------CCCCHHHHHHHHHhCCceeE---EEecCCCCCCCCCCccccCCceEecccCCCCcHHHH---
Q 044647 2 SLLVNIVRG---------GLLDYEVVAHYLESGHLGGL---GLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSY--- 66 (93)
Q Consensus 2 ailIN~aRg---------~lvd~~aL~~aL~~g~i~ga---alDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~--- 66 (93)
..+|||++- ++-+..++++++.+|.+.-+ -..+|.-+= |...|+. |-=++.|-..+...+..
T Consensus 412 i~lvNtg~~gg~G~g~r~~~~~tr~il~~i~~g~~~~~~~~~~pif~~~i-P~~~~gv--~~~~l~p~~~w~~~~~~~~~ 488 (515)
T cd01919 412 IFLVNTGRKGKEGKFKRPGFGETRAIIDAIFNGILDKAETKLTPIFNLYI-PKALNLV--GLGHLNPRNMMELFSQSKEF 488 (515)
T ss_pred EEEEeccccCCCCCcccCCHHHHHHHHHHHHhCCcCCCCeEEccccCEEe-CcccCCC--CcccCCHHHhhhhhhhhHHH
Confidence 468999553 56689999999999999732 112221110 1212221 22246776555444444
Q ss_pred -HHHHHHHHHHHHHHHcC
Q 044647 67 -RSTAKVVGDVALQLHAG 83 (93)
Q Consensus 67 -~~~~~~~~~~i~~~~~g 83 (93)
.+...++.+|+.+|..-
T Consensus 489 ~~~l~~~f~~nf~~~~~~ 506 (515)
T cd01919 489 WDKLVEDFEKYFVDQVNA 506 (515)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 44455555666665433
No 67
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=29.52 E-value=1.2e+02 Score=17.51 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=31.3
Q ss_pred HhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 23 ESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 23 ~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
++..+..|+.++ .+|+...+++-+.---+....++.....+.+.+.+..+.
T Consensus 24 ~~p~V~fagY~v--------pHPl~~~i~l~Iqt~~~~~p~~~l~~a~~~l~~~~~~l~ 74 (77)
T PF13656_consen 24 KDPDVEFAGYRV--------PHPLENKINLRIQTKGGITPIEALKKALEDLIKICEELK 74 (77)
T ss_dssp TSTTEEEEEEEE--------SETTSSEEEEEEEESTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEecc--------CCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345666688777 355555566655544333677778777777777666554
No 68
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=29.27 E-value=91 Score=19.34 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhCCceeEEEecCCCCCC
Q 044647 12 LLDYEVVAHYLESGHLGGLGLDVAWTKPF 40 (93)
Q Consensus 12 lvd~~aL~~aL~~g~i~gaalDV~~~Ep~ 40 (93)
+-+..++.+||..|+-..+.+|.-.-.|-
T Consensus 3 L~~~~~i~~AL~~Gk~V~v~iDls~Ct~~ 31 (100)
T PF06903_consen 3 LNTYAAILQALDAGKNVTVVIDLSQCTPE 31 (100)
T ss_pred cccHHHHHHHHHcCCeEEEEEEHHHCccC
Confidence 45678999999999999999998655553
No 69
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=29.18 E-value=2.2e+02 Score=20.52 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhCCceeEEEecCCCCC
Q 044647 14 DYEVVAHYLESGHLGGLGLDVAWTKP 39 (93)
Q Consensus 14 d~~aL~~aL~~g~i~gaalDV~~~Ep 39 (93)
..++.++||..| .+..-||+|+.++
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdg~~ 55 (258)
T cd08625 31 SVEMYRQVLLTG-CRCIELDCWKGRP 55 (258)
T ss_pred CHHHHHHHHHcC-CCEEEEEecCCCC
Confidence 467889999865 4569999998763
No 70
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=28.58 E-value=1.1e+02 Score=18.43 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHH
Q 044647 12 LLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSY 66 (93)
Q Consensus 12 lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~ 66 (93)
=+|.++|.+.+++....|+-+--+..||. ..-|..+.=.++.|--.+.|.+..
T Consensus 16 evDle~L~~~ik~~~~~g~~~~~~~~ePi--aFGLkaL~~~~vv~D~~g~td~le 68 (88)
T TIGR00489 16 DVDLEALKEKIKERIPEGVEIRKIDEEPI--AFGLVAINVMVVMGDAEGGTEAAE 68 (88)
T ss_pred ccCHHHHHHHHHHhCcCCcEEeeeEEEee--eccceeeEEEEEEecCCcChHHHH
Confidence 37999999999998888887777888886 344555555566777777776543
No 71
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=28.55 E-value=1.2e+02 Score=20.95 Aligned_cols=57 Identities=19% Similarity=0.097 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 044647 15 YEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 85 (93)
Q Consensus 15 ~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~~ 85 (93)
...+.+.|+.| +++.=||++...+ +.-+..-|-..... ....+.+.+.+.+|++..|
T Consensus 40 ~~~i~~QL~~G-iR~~dlr~~~~~~----------~~~~~~~H~~~~~~---~~~~~~vL~~i~~fl~~~p 96 (271)
T cd08557 40 DLSITDQLDAG-VRYLDLRVAYDPD----------DGDLYVCHGLFLLN---GQTLEDVLNEVKDFLDAHP 96 (271)
T ss_pred CCCHHHHHhcC-ceEEEEEeeeecC----------CCcEEEEccccccC---cccHHHHHHHHHHHHHHCC
Confidence 44678999999 9989999987765 11222233222210 2334567788888887665
No 72
>PRK06490 glutamine amidotransferase; Provisional
Probab=28.32 E-value=2e+02 Score=20.13 Aligned_cols=41 Identities=10% Similarity=-0.105 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEeccc
Q 044647 15 YEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPH 57 (93)
Q Consensus 15 ~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH 57 (93)
...|.+.|++....--..+++..+++|. .+-+..-+++|+=
T Consensus 21 ~g~l~~~l~~~g~~~~v~~~~~~~~~p~--~l~~~dgvii~Gg 61 (239)
T PRK06490 21 PGRVGQLLQERGYPLDIRRPRLGDPLPD--TLEDHAGAVIFGG 61 (239)
T ss_pred ChHHHHHHHHCCCceEEEeccCCCCCCC--cccccCEEEEECC
Confidence 4456777776544434455555555432 2445678899883
No 73
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=27.52 E-value=76 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCc
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHL 27 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i 27 (93)
|.++||+++....+..++.+.++++.+
T Consensus 86 g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 86 GKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 468999999998888899999988644
No 74
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=27.37 E-value=70 Score=18.72 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=26.0
Q ss_pred EEEeccCCCCCCHHHHHHHHHhCCceeEEEecCC
Q 044647 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAW 36 (93)
Q Consensus 3 ilIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~ 36 (93)
-+|++-.|. ==.+.|.++++...+...+.|||-
T Consensus 12 T~V~vrpG~-ti~d~L~kllekRgl~~~~~~vf~ 44 (73)
T cd01817 12 TVVPTRPGE-SIRDLLSGLCEKRGINYAAVDLFL 44 (73)
T ss_pred EEEEecCCC-CHHHHHHHHHHHcCCChhHEEEEE
Confidence 456664444 446889999999999999999984
No 75
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=27.14 E-value=1.1e+02 Score=23.47 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHhCCceeEEEecCCCCCCCCCC-c----cccCCceEec
Q 044647 17 VVAHYLESGHLGGLGLDVAWTKPFDPNN-P----ILKFQIVLIT 55 (93)
Q Consensus 17 aL~~aL~~g~i~gaalDV~~~Ep~~~~~-~----l~~~~nvi~T 55 (93)
.|++.|+.-+=+..++|++-.+|..+.+ . +.+.+|++..
T Consensus 87 ~Ll~kL~a~qp~aIgLDi~r~~P~~~~~~~La~~~~~~~nli~~ 130 (400)
T COG4252 87 RLLDKLAAAQPRAIGLDIYRDLPSSPGDRALAAVLQRAPNLIGV 130 (400)
T ss_pred HHHHHHHhcCCcEEEEEEeecCCCCcccHHHHHHhccCcceEEE
Confidence 4566677777788999999999864333 2 3445666544
No 76
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=26.64 E-value=28 Score=23.74 Aligned_cols=23 Identities=4% Similarity=0.063 Sum_probs=20.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHh
Q 044647 2 SLLVNIVRGGLLDYEVVAHYLES 24 (93)
Q Consensus 2 ailIN~aRg~lvd~~aL~~aL~~ 24 (93)
.+.+|+.||.+|+.++|..+|..
T Consensus 179 p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 179 PVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred ceeecCCCCCEEEEechHHHHHH
Confidence 46789999999999999999875
No 77
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=26.58 E-value=2.3e+02 Score=19.84 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=29.1
Q ss_pred cEEEec-cCCCCCCHHHHHHHHHhCCceeEEEecCCCCC
Q 044647 2 SLLVNI-VRGGLLDYEVVAHYLESGHLGGLGLDVAWTKP 39 (93)
Q Consensus 2 ailIN~-aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep 39 (93)
.+-|.+ .-|.+.+..+.++++++|.+-.+......-..
T Consensus 29 ~v~i~v~~~g~lg~~~e~~~~v~~G~vdm~~~~~~~~~~ 67 (286)
T PF03480_consen 29 RVKIEVFPAGQLGKEAEVLEAVQDGAVDMAVVSPSYLAG 67 (286)
T ss_dssp SEEEEEEETTSSSSHHHHHHHHHTTSSSEEEEEGGGGTT
T ss_pred eEEEEEecCcccCCHHHHHHHHhCCCccEEeecchhhhh
Confidence 344555 35779999999999999999988888754433
No 78
>PRK04323 hypothetical protein; Provisional
Probab=26.17 E-value=91 Score=19.00 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=31.6
Q ss_pred EEEeccCCCCCCH-----------HHHHHHHHhCCceeEEEecCCCCCCCCCCccc-cCCceEeccc
Q 044647 3 LLVNIVRGGLLDY-----------EVVAHYLESGHLGGLGLDVAWTKPFDPNNPIL-KFQIVLITPH 57 (93)
Q Consensus 3 ilIN~aRg~lvd~-----------~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~-~~~nvi~TPH 57 (93)
.|||++.|-+|.. ....+.++.-+-.|..+|.....-. ..-+. +...|+++|=
T Consensus 4 ~~inIGfgn~V~~~rIIAIv~~~Sap~Kr~~~~ak~~g~lidaT~Grkt--rsvIItds~hV~LSai 68 (91)
T PRK04323 4 KLINIGFGNIVSANRIIAIVSPESAPIKRIIQEARERGMLIDATYGRKT--RAVIITDSGHVILSAI 68 (91)
T ss_pred eEEEecCCcEEEcccEEEEECCCcHHHHHHHHHHHHcCeEEeccCCCce--eEEEEecCCeEEEeeC
Confidence 5788888877653 3344555666777788898764431 22222 2233777664
No 79
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=25.87 E-value=66 Score=18.19 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=18.1
Q ss_pred EEEeccCCCCCCHHHHHHHHHhC
Q 044647 3 LLVNIVRGGLLDYEVVAHYLESG 25 (93)
Q Consensus 3 ilIN~aRg~lvd~~aL~~aL~~g 25 (93)
++||.+|..=++..+|+.+|.+.
T Consensus 3 l~in~Gr~dg~~~~~iv~~i~~~ 25 (74)
T PF03880_consen 3 LFINVGRKDGLTPRDIVGAICNE 25 (74)
T ss_dssp EEES-SGGGT--HHHHHHHHHTC
T ss_pred EEEEcccccCCCHHHHHHHHHhc
Confidence 68999999999999999999874
No 80
>PTZ00445 p36-lilke protein; Provisional
Probab=25.68 E-value=68 Score=22.70 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCceeEEEec
Q 044647 16 EVVAHYLESGHLGGLGLDV 34 (93)
Q Consensus 16 ~aL~~aL~~g~i~gaalDV 34 (93)
+.+.+.|++..|...++|.
T Consensus 32 ~~~v~~L~~~GIk~Va~D~ 50 (219)
T PTZ00445 32 DKFVDLLNECGIKVIASDF 50 (219)
T ss_pred HHHHHHHHHcCCeEEEecc
Confidence 4578889999999999997
No 81
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=24.78 E-value=1.3e+02 Score=21.02 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=24.3
Q ss_pred ecccCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 044647 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGT 84 (93)
Q Consensus 54 ~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~ 84 (93)
+||+-+ .|+|...|+...+.+.|.+++-|+
T Consensus 97 itP~~~-vsKeeK~rre~eamk~ic~~l~~~ 126 (210)
T KOG3197|consen 97 ITPSDG-VSKEEKHRREFEAMKYICQLLIGE 126 (210)
T ss_pred CCCCCC-ccHHHHHHHHHHHHHHHHHHhcch
Confidence 799955 778888888888899999988763
No 82
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.33 E-value=1.2e+02 Score=20.92 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=42.7
Q ss_pred EEEeccCCCCCCHHHHHHHHHhCCceeEEEecCC------CCCCCC---CCccccCCceEecccCCCCcHHHHHHHHHHH
Q 044647 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAW------TKPFDP---NNPILKFQIVLITPHVGGVTEHSYRSTAKVV 73 (93)
Q Consensus 3 ilIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~------~Ep~~~---~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~ 73 (93)
++|-++||+++--.-|-+.|.-..+.++.+--|. .++... .-..+.-.+|++==-+. -|.++.....+.+
T Consensus 32 vIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~-DTG~Tl~~a~~~l 110 (192)
T COG2236 32 VIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIV-DTGETLELALEEL 110 (192)
T ss_pred EEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEeccc-CchHhHHHHHHHH
Confidence 5788999999999999999999888655443331 122100 00114456787766655 4555554444333
No 83
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=23.79 E-value=1e+02 Score=21.77 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=22.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhCCce
Q 044647 1 GSLLVNIVRGGLLDYEVVAHYLESGHLG 28 (93)
Q Consensus 1 gailIN~aRg~lvd~~aL~~aL~~g~i~ 28 (93)
|.++||++........++.+.+.+..+.
T Consensus 89 g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 89 GTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 4689999999877778888888876543
No 84
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=22.70 E-value=82 Score=17.06 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHhCCce
Q 044647 9 RGGLLDYEVVAHYLESGHLG 28 (93)
Q Consensus 9 Rg~lvd~~aL~~aL~~g~i~ 28 (93)
|| |+.+.+.++|..|.+-
T Consensus 13 R~--Is~~~I~~~l~~g~i~ 30 (73)
T PF14076_consen 13 RG--ISEEDIEDALENGEII 30 (73)
T ss_pred CC--CCHHHHHHHHhcCeEe
Confidence 55 8999999999999885
No 85
>PLN02228 Phosphoinositide phospholipase C
Probab=22.41 E-value=2.1e+02 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=26.2
Q ss_pred EEEeccC-----CCCC----CHHHHHHHHHhCCceeEEEecCCCC
Q 044647 3 LLVNIVR-----GGLL----DYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 3 ilIN~aR-----g~lv----d~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
++||+|+ |.-+ ..++.++||..| .+..-||+|+.+
T Consensus 115 YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~G-cRcvElD~wdg~ 158 (567)
T PLN02228 115 YFVYTGHNSYLTGNQVNSRSSVEPIVQALRKG-VKVIELDLWPNP 158 (567)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcC-CcEEEEEeccCC
Confidence 5788877 4333 578899999986 456999999853
No 86
>PRK02769 histidine decarboxylase; Provisional
Probab=22.41 E-value=1.7e+02 Score=21.96 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=18.7
Q ss_pred ceEecccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 044647 51 IVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPV 92 (93)
Q Consensus 51 nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~~~~~~~~~ 92 (93)
++++|||+ |.+.. +.+++.+...+. ++.++.|.
T Consensus 347 hi~~~~~~---~~~~~----~~f~~dl~~~~~--~~~~~~~~ 379 (380)
T PRK02769 347 HIITMPHH---NKQQI----DSLIDELIFDLK--NPNKIDFS 379 (380)
T ss_pred EEEECCCC---CHHHH----HHHHHHHHHHHh--cccccccC
Confidence 89999997 55544 344444444444 33334444
No 87
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=22.01 E-value=94 Score=19.91 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=18.3
Q ss_pred EecccCCCCcHHHHHHHHH----HHHHHHHHHH
Q 044647 53 LITPHVGGVTEHSYRSTAK----VVGDVALQLH 81 (93)
Q Consensus 53 i~TPH~a~~t~e~~~~~~~----~~~~~i~~~~ 81 (93)
.++||+++.....+..|.. .+.+.+..|+
T Consensus 82 ~lsp~v~~~~~~ey~~mv~~I~~~v~e~m~~FF 114 (118)
T PRK13713 82 SLSPHVSGNPKFEYANMVEDIREKVSEEMERFF 114 (118)
T ss_pred cccHhhcCCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 4789999988865555444 4444455444
No 88
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=21.89 E-value=1.3e+02 Score=16.28 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=15.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHH
Q 044647 2 SLLVNIVRGGLLDYEVVAHYLE 23 (93)
Q Consensus 2 ailIN~aRg~lvd~~aL~~aL~ 23 (93)
-+.||++-|+-.+...|..+..
T Consensus 10 KIvin~gvg~~~~~k~l~~a~~ 31 (56)
T PF00281_consen 10 KIVINIGVGEAGDDKVLEKAKK 31 (56)
T ss_dssp EEEEEEESSTTSSTHHHHHHHH
T ss_pred EEEEECCCCccccchHHHHHHH
Confidence 3789999998776555544443
No 89
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=21.85 E-value=2.3e+02 Score=19.84 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHhCCceeEEEecCCCCCCC--CCCccccCCc-eEec
Q 044647 9 RGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFD--PNNPILKFQI-VLIT 55 (93)
Q Consensus 9 Rg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~--~~~~l~~~~n-vi~T 55 (93)
...+.+.++|.+.|..-+-.|+++|.-+.+|-- ..-|+++... ++.+
T Consensus 162 ~~t~~~~~~l~~el~~iR~~Gya~~~~e~~~gv~~iAaPi~~~~g~v~aa 211 (246)
T COG1414 162 PRTITDPEALLEELAEIRARGYAVDDEELEPGVRCIAAPIFDAGGEVVAA 211 (246)
T ss_pred CCCCCCHHHHHHHHHHHHhcCeeeeccccccCcEEEEEEEECCCCCEEEE
Confidence 345789999999999999999999998888742 1236666653 4433
No 90
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=21.83 E-value=52 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCC
Q 044647 64 HSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93 (93)
Q Consensus 64 e~~~~~~~~~~~~i~~~~~g~~~~~~~~~n 93 (93)
+......+.+.++|++|.+...+..+++||
T Consensus 125 ~~~~~~~e~~~~DI~~f~~~~~~d~vVvvn 154 (295)
T PF07994_consen 125 ESKREQVEQIREDIRDFKKENGLDRVVVVN 154 (295)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-SCEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456777888999999999988888777765
No 91
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=21.79 E-value=30 Score=18.58 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhCC
Q 044647 11 GLLDYEVVAHYLESGH 26 (93)
Q Consensus 11 ~lvd~~aL~~aL~~g~ 26 (93)
.+-+.++|+++|++|+
T Consensus 40 ~~~s~~~l~~alr~g~ 55 (56)
T PF13263_consen 40 PIRSPEELLEALRAGR 55 (56)
T ss_dssp ----------------
T ss_pred cccccccccccccccC
Confidence 3446788999999886
No 92
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=21.76 E-value=1.7e+02 Score=21.14 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=19.0
Q ss_pred CHHHHHHHHHhCCceeEEEecCCCC
Q 044647 14 DYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 14 d~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
..++..+||+.| .+..-||+|+..
T Consensus 31 s~~~y~~aL~~G-cRcvElD~wdg~ 54 (257)
T cd08626 31 SVEMYRQVLLAG-CRCIELDCWDGK 54 (257)
T ss_pred cHHHHHHHHHcC-CcEEEEEecCCC
Confidence 467889999876 456999999864
No 93
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=21.70 E-value=2.2e+02 Score=20.18 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=43.9
Q ss_pred EEEeccC-----CCC----CCHHHHHHHHHhCCceeEEEecCCCC---CCC-------CCCccc------------cC-C
Q 044647 3 LLVNIVR-----GGL----LDYEVVAHYLESGHLGGLGLDVAWTK---PFD-------PNNPIL------------KF-Q 50 (93)
Q Consensus 3 ilIN~aR-----g~l----vd~~aL~~aL~~g~i~gaalDV~~~E---p~~-------~~~~l~------------~~-~ 50 (93)
++||.|+ |.- =..++..+||..| .+..-+|+|+.+ |.- ..-++. .. =
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~e~Y~~aL~~G-cRcvElD~wdg~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~y 89 (227)
T cd08594 11 YFIASSHNTYLTGDQLLSQSRVDMYARVLQAG-CRCVEVDCWDGPDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEY 89 (227)
T ss_pred heeecccCccccCCcccCcccHHHHHHHHHhC-CcEEEEEeecCCCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCC
Confidence 4677766 221 2467899999776 445999999864 420 000111 01 1
Q ss_pred ceEecccCCCCcHHHHHHHHHHHHHHHHHHH
Q 044647 51 IVLITPHVGGVTEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 51 nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~ 81 (93)
=||+|...- .+.+.+..|++.+.+.+-..+
T Consensus 90 PvIlSlE~H-cs~~qQ~~ma~~l~~~lGd~L 119 (227)
T cd08594 90 PVILSIENH-CSVQQQKKMAQYLKEILGDKL 119 (227)
T ss_pred CEEEEeccc-CCHHHHHHHHHHHHHHHhHHh
Confidence 345555222 255667777777777776666
No 94
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=21.54 E-value=3.5e+02 Score=24.38 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=39.5
Q ss_pred EecCCCCCCCCCCccccCCceEecccC-------CCCcHHHHHHHHHHHHHHHHHHHc---CCCCCCccc
Q 044647 32 LDVAWTKPFDPNNPILKFQIVLITPHV-------GGVTEHSYRSTAKVVGDVALQLHA---GTPLRGIEP 91 (93)
Q Consensus 32 lDV~~~Ep~~~~~~l~~~~nvi~TPH~-------a~~t~e~~~~~~~~~~~~i~~~~~---g~~~~~~~~ 91 (93)
||--+-+|-|...|+++.|.|+=|-.. .--|..+++.-.+.+-+-|.+|.+ |+-|..+-+
T Consensus 922 L~G~yI~PgpgGdp~R~~pdvLPTGRN~ya~DP~~iPT~aAw~~G~~lA~~lLe~y~~~~~G~yPe~Va~ 991 (1353)
T PLN03241 922 LGGEYVPPAPGGDLLRDGPGVLPTGRNIHALDPYRMPSAAAWARGARVAAAIIEQHRAANDGAYPETVAV 991 (1353)
T ss_pred hCCceeCCCCCCCcccCCCCcCCCCCcccccCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEE
Confidence 333344677778899888877776543 235788887777777777778872 555555443
No 95
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.39 E-value=3.6e+02 Score=23.67 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC-------CCcHHHHHHHHHHHHHHHHHHH--cCC
Q 044647 14 DYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG-------GVTEHSYRSTAKVVGDVALQLH--AGT 84 (93)
Q Consensus 14 d~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a-------~~t~e~~~~~~~~~~~~i~~~~--~g~ 84 (93)
..++|++||+.+.+ +|-|...|.+..|.|+=|-..= --|..+++.-.+.+-+-|.+|+ .|+
T Consensus 696 E~~~ll~aL~G~yV----------~pGp~G~P~Rg~~dvLPTGRNfys~Dp~~iPT~aAw~~G~~lAe~ll~~y~~e~G~ 765 (1100)
T PRK12321 696 ERAALLAALDGRRV----------APGPAGSPSRGRSDVLPTGRNLFTVDPRAVPTRAAHALGVKAAEELLRRHLQDHGD 765 (1100)
T ss_pred HHHHHHHHhCCcee----------CCCCCCCcccCCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566777766655 5666778888877777665433 2577777666555555666676 455
Q ss_pred CCCCcc
Q 044647 85 PLRGIE 90 (93)
Q Consensus 85 ~~~~~~ 90 (93)
-|..+.
T Consensus 766 yPe~va 771 (1100)
T PRK12321 766 WPRGLV 771 (1100)
T ss_pred CCceEE
Confidence 555543
No 96
>PLN02705 beta-amylase
Probab=21.31 E-value=1.2e+02 Score=24.93 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHH---HHHhCCceeEEEecCCC
Q 044647 9 RGGLLDYEVVAH---YLESGHLGGLGLDVAWT 37 (93)
Q Consensus 9 Rg~lvd~~aL~~---aL~~g~i~gaalDV~~~ 37 (93)
-+.+.+.++|.. +|++--+-|..+||||.
T Consensus 261 ~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWG 292 (681)
T PLN02705 261 FCQLVDPEGVRQELSHMKSLNVDGVVVDCWWG 292 (681)
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeee
Confidence 466788888855 56778888899999974
No 97
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=21.25 E-value=2.9e+02 Score=21.40 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=45.8
Q ss_pred cEEEeccC-CCCCCHHHHHHHHHhCCceeEEEecCCCCCCCC----CCccccCCceEecccCCCCcHHHHHHHHHHHHHH
Q 044647 2 SLLVNIVR-GGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP----NNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDV 76 (93)
Q Consensus 2 ailIN~aR-g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~----~~~l~~~~nvi~TPH~a~~t~e~~~~~~~~~~~~ 76 (93)
.++|||.- -.=-..++|+.|++.=.+- ..=|..+|++-. +.|-...=+|+.-|..+|...-+.+-..+.--++
T Consensus 214 G~iInT~g~i~~egy~~llhai~~f~v~--vviVLg~ErLy~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r~~~ 291 (415)
T KOG2749|consen 214 GCIINTCGWIEGEGYAALLHAIKAFEVD--VVIVLGQERLYSSLKKDLPPKKNVRVVKLPKSGGVVARSKEVRRKLRGRS 291 (415)
T ss_pred ceEEeccceeccccHHHHHHHHHHcCcc--EEEEeccHHHHHHHHhhccccccceEEEecCCCCeEeehHHHHHHHhhhh
Confidence 45677631 1111346677766664332 233556676411 1111234488889998887655544444455679
Q ss_pred HHHHHcCC
Q 044647 77 ALQLHAGT 84 (93)
Q Consensus 77 i~~~~~g~ 84 (93)
|++|+.|.
T Consensus 292 I~eYFYG~ 299 (415)
T KOG2749|consen 292 IREYFYGS 299 (415)
T ss_pred HHHhcccc
Confidence 99999983
No 98
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=21.24 E-value=3.7e+02 Score=23.71 Aligned_cols=66 Identities=14% Similarity=-0.053 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC-------CCcHHHHHHHHHHHHHHHHHHH--cCCC
Q 044647 15 YEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG-------GVTEHSYRSTAKVVGDVALQLH--AGTP 85 (93)
Q Consensus 15 ~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a-------~~t~e~~~~~~~~~~~~i~~~~--~g~~ 85 (93)
.++|++||+.+.+ +|-|...|.+..|+|+=|-..= --|..+++.-.+.+-+-|++|+ .|+-
T Consensus 711 ~~~ll~aL~G~yV----------~pGp~G~P~Rg~pdvLPTGRNfys~Dpr~iPT~aAw~~G~~lAe~ll~~y~~ehG~y 780 (1122)
T TIGR02257 711 IAGLLAGLNGRYV----------SAGPSGAPTRGRPDVLPTGRNFYSVDLRGLPTPAAWDLGKKSAEQLIERYLQDHGDW 780 (1122)
T ss_pred HHHHHHHhCCcee----------CCCCCCCcccCCCCCCCCCCcccccCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566676666555 5666778888888777776533 2577777666665556666676 3555
Q ss_pred CCCcc
Q 044647 86 LRGIE 90 (93)
Q Consensus 86 ~~~~~ 90 (93)
|..+.
T Consensus 781 Pe~va 785 (1122)
T TIGR02257 781 PRSLA 785 (1122)
T ss_pred CceEE
Confidence 55543
No 99
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.22 E-value=3.6e+02 Score=23.99 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=37.8
Q ss_pred EEecCCCCCCCCCCccccCCceEecccCC-------CCcHHHHHHHHHHHHHHHHHHHc--CCCCCCcc
Q 044647 31 GLDVAWTKPFDPNNPILKFQIVLITPHVG-------GVTEHSYRSTAKVVGDVALQLHA--GTPLRGIE 90 (93)
Q Consensus 31 alDV~~~Ep~~~~~~l~~~~nvi~TPH~a-------~~t~e~~~~~~~~~~~~i~~~~~--g~~~~~~~ 90 (93)
|||--.-+|-|...|.+..|.|+=|-..= --|+.+++.-.+.+-+-|.+|++ |+-|..+.
T Consensus 823 aL~G~yI~pGpgGdP~Rg~pdvLPTGRNfys~Dp~~iPT~aAw~~G~~lA~~ll~~y~~e~G~yPe~va 891 (1244)
T PRK05989 823 GLDGRFVPPGPSGAPTRGRPDVLPTGRNFYSVDPRAVPTRAAWELGQKLAEQLLERYLQEHGEYPRSVG 891 (1244)
T ss_pred HhCCcccCCCCCCccccCCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeE
Confidence 34444446777788999888777776533 25777777666666666666763 54454443
No 100
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=21.18 E-value=1.3e+02 Score=17.35 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHhCCceeEEEecCCCC
Q 044647 10 GGLLDYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 10 g~lvd~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
|..|+.+.+.+.++++. ...+||-+.+
T Consensus 1 ~~~is~~~l~~~~~~~~--~~iiDvR~~~ 27 (101)
T cd01518 1 GTYLSPAEWNELLEDPE--VVLLDVRNDY 27 (101)
T ss_pred CCcCCHHHHHHHHcCCC--EEEEEcCChh
Confidence 56788999999887654 3789995443
No 101
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=21.03 E-value=55 Score=23.92 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=10.0
Q ss_pred CceEecccCCCCcHH
Q 044647 50 QIVLITPHVGGVTEH 64 (93)
Q Consensus 50 ~nvi~TPH~a~~t~e 64 (93)
-+.|+.||. |+|--
T Consensus 40 aRaiIaPHA-GY~Yc 53 (296)
T KOG3086|consen 40 ARAIIAPHA-GYTYC 53 (296)
T ss_pred ceEEEcCCC-Ccccc
Confidence 389999994 45543
No 102
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.89 E-value=25 Score=26.56 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=26.3
Q ss_pred CceEecccCCCCcHHHHHH---------HHHHHHHHHHHHHcCCCCCC
Q 044647 50 QIVLITPHVGGVTEHSYRS---------TAKVVGDVALQLHAGTPLRG 88 (93)
Q Consensus 50 ~nvi~TPH~a~~t~e~~~~---------~~~~~~~~i~~~~~g~~~~~ 88 (93)
..+++|||++-++...... ..+.+.+-..+|.+++++..
T Consensus 230 ~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVr 277 (349)
T COG0002 230 VPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVR 277 (349)
T ss_pred CceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEE
Confidence 3599999999876543211 24456667788888888654
No 103
>smart00200 SEA Domain found in sea urchin sperm protein, enterokinase, agrin. Proposed function of regulating or binding carbohydrate sidechains.
Probab=20.84 E-value=2.1e+02 Score=17.85 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=33.4
Q ss_pred CCceEecccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 044647 49 FQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLR 87 (93)
Q Consensus 49 ~~nvi~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~~~~ 87 (93)
..|+.+||.++-.+......+.+.+.+.+...+.+.++.
T Consensus 16 ~~~i~ys~~L~d~sS~~f~eL~~~ie~~l~~~f~~s~l~ 54 (121)
T smart00200 16 GENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKTDLK 54 (121)
T ss_pred ccceeeChhhCCcccHHHHHHHHHHHHHHHHHHhcCccc
Confidence 357889999999999999999999999999999877543
No 104
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=20.74 E-value=1.8e+02 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.032 Sum_probs=18.9
Q ss_pred CHHHHHHHHHhCCceeEEEecCCCC
Q 044647 14 DYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 14 d~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
..++..+||..|= +..-||+|+.+
T Consensus 31 s~~~y~~aL~~Gc-RcvElD~wdg~ 54 (226)
T cd08558 31 SVEAYIRALLRGC-RCVELDCWDGP 54 (226)
T ss_pred CHHHHHHHHHhCC-cEEEEEeecCC
Confidence 4678999999764 45999999873
No 105
>PRK07369 dihydroorotase; Provisional
Probab=20.61 E-value=87 Score=23.73 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhCCceeEEEecCCC
Q 044647 13 LDYEVVAHYLESGHLGGLGLDVAWT 37 (93)
Q Consensus 13 vd~~aL~~aL~~g~i~gaalDV~~~ 37 (93)
=|.++|.++|++|.|-..+.|=-..
T Consensus 287 ~d~~aL~~~l~~G~Id~i~SDHaP~ 311 (418)
T PRK07369 287 SDRQALIEGVRTGVIDAIAIDHAPY 311 (418)
T ss_pred HHHHHHHHHHhcCCCCEEEcCCCCC
Confidence 4788999999999999999886433
No 106
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=20.35 E-value=69 Score=18.17 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.8
Q ss_pred EEEeccCCCCCCHHHHHHHHHhCCceeEEEecC---CCCCCCCCC
Q 044647 3 LLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVA---WTKPFDPNN 44 (93)
Q Consensus 3 ilIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~---~~Ep~~~~~ 44 (93)
..|++--|..+ .++|..+++...+--...+|| ...|++.+.
T Consensus 13 t~V~vrpg~ti-~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 13 TVVQVRPGMTI-RDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEE-TTSBH-HHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEEEcCCCCH-HHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 34555445544 899999999999988888888 556655443
No 107
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=20.29 E-value=1.6e+02 Score=15.82 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 044647 62 TEHSYRSTAKVVGDVALQLH 81 (93)
Q Consensus 62 t~e~~~~~~~~~~~~i~~~~ 81 (93)
.+|..++|.+.++..+++|+
T Consensus 13 PeE~k~kmR~dvissvrnFl 32 (51)
T PF15178_consen 13 PEEMKRKMREDVISSVRNFL 32 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999988875
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=20.25 E-value=2.4e+02 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.020 Sum_probs=24.7
Q ss_pred EEEeccCC---------CCCCHHHHHHHHHhCCceeEEEecCCCC
Q 044647 3 LLVNIVRG---------GLLDYEVVAHYLESGHLGGLGLDVAWTK 38 (93)
Q Consensus 3 ilIN~aRg---------~lvd~~aL~~aL~~g~i~gaalDV~~~E 38 (93)
++||+|+= +--..++.++||..| .+..-||+|+.+
T Consensus 124 YfI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~G-cRcvElD~wdg~ 167 (598)
T PLN02230 124 YFIFTGHNSYLTGNQLSSNCSELPIADALRRG-VRVVELDLWPRG 167 (598)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcC-CcEEEEeccCCC
Confidence 56777663 123567899999876 445999999753
No 109
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.14 E-value=1.6e+02 Score=15.53 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 044647 59 GGVTEHSYRSTAKVVGDVALQLHAGTPLRG 88 (93)
Q Consensus 59 a~~t~e~~~~~~~~~~~~i~~~~~g~~~~~ 88 (93)
.+.|.+...++.+.+.+-+.+.+. .+...
T Consensus 9 ~g~~~e~K~~l~~~it~~~~~~lg-~~~~~ 37 (60)
T PF01361_consen 9 EGRTAEQKRELAEAITDAVVEVLG-IPPER 37 (60)
T ss_dssp STS-HHHHHHHHHHHHHHHHHHHT-S-GGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC-cCCCe
Confidence 455899999999999998888774 45444
No 110
>PF14328 DUF4385: Domain of unknown function (DUF4385)
Probab=20.14 E-value=2.7e+02 Score=18.48 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=29.9
Q ss_pred ecccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 044647 54 ITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLRG 88 (93)
Q Consensus 54 ~TPH~a~~t~e~~~~~~~~~~~~i~~~~~g~~~~~ 88 (93)
+.||--+-|.+.-...++.+.+-...|++.....+
T Consensus 38 ilP~WrFktp~iA~~Ss~kIy~~Fl~Y~~~~DFvG 72 (145)
T PF14328_consen 38 ILPHWRFKTPEIARESSEKIYEMFLDYLEQDDFVG 72 (145)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 67999999999999999999999999988776554
No 111
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=20.12 E-value=1.5e+02 Score=20.81 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=29.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhCCceeEEEecCCCCCCCCCCccccCCceEecccCC
Q 044647 2 SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59 (93)
Q Consensus 2 ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 59 (93)
+++|+.+=+.-.+...+.+.+++.... ..+|.... .+.....+......++|||..
T Consensus 95 avvig~Gl~~~~~~~~l~~~~~~~~~p-vVlDa~g~-~l~~~~~~~~~~~~vItPN~~ 150 (272)
T TIGR00196 95 VVVIGPGLGQDPSFKKAVEEVLELDKP-VVLDADAL-NLLTYDKPKREGEVILTPHPG 150 (272)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHhcCCC-EEEEhHHH-HHHhhcccccCCCEEECCCHH
Confidence 567776655544455666666664443 78896321 111111111223478999853
Done!