RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044647
(93 letters)
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 72.7 bits (179), Expect = 5e-17
Identities = 23/91 (25%), Positives = 37/91 (40%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
+L VN R L++ + L G G +DV T+P + +L+ + + TPH+G
Sbjct: 244 TALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGY 303
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGIEP 91
V SY + L + G P
Sbjct: 304 VERESYEMYFGIAFQNILDILQGNVDSVANP 334
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 69.2 bits (170), Expect = 8e-16
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTK-PFDPNNPILKFQIVLITPHVG 59
++ VN+ R +LD + V L+ DV W + F + V+ TP V
Sbjct: 203 DAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 262
Query: 60 GVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
G + R ++V + L G P N
Sbjct: 263 GGY-GNERVWRQMVMEAVRNLITY--ATGGRPRN 293
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 67.3 bits (165), Expect = 4e-15
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
+L+NI RG +D + L+ L LDV +P ++P+ + VLITPH+ G
Sbjct: 220 QPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISG 279
Query: 61 VTEHSYRSTAKVVGD-VALQLHAGTPLRGI 89
H + + A + GT +R
Sbjct: 280 QIAHFRATVFPIFAANFAQFVKDGTLVRNQ 309
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 63.8 bits (156), Expect = 9e-14
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G L+VN RG +++ + V +ESGH+GG DV +P ++P +TPH G
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 61 VTE 63
T
Sbjct: 309 TTI 311
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 62.3 bits (152), Expect = 3e-13
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ +VN RG L D + VA LESG L G DV + +P ++P +TPH+ G
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 61 VTE 63
T
Sbjct: 336 TTL 338
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 61.0 bits (149), Expect = 7e-13
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
++L+N RG ++D + L+ G + G GLDV +P ++P+ KF V++TPH+G
Sbjct: 225 TAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGA 284
Query: 61 VTE 63
T
Sbjct: 285 STV 287
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 60.0 bits (146), Expect = 2e-12
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+ ++N+ RG + + L+SG L G LDV +P +P+ + V +TPH+
Sbjct: 222 GAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAA 281
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGI 89
VT + QL G P+ G
Sbjct: 282 VT--RPAEAIDYISRTITQLEKGEPVTGQ 308
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 60.0 bits (146), Expect = 2e-12
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G++L N+ RG ++ + L +G LG LDV +P ++P+ ++ITPH
Sbjct: 223 GAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSA 282
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGI 89
+ A++ ++ G PL G
Sbjct: 283 YS--FPDDVAQIFVRNYIRFIDGQPLDGK 309
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 59.2 bits (144), Expect = 4e-12
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVL-----IT 55
G+ LVN RG + E VA LESG L G G DV + +P ++P + +T
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMT 309
Query: 56 PHVGGVTE 63
PH G T
Sbjct: 310 PHYSGTTL 317
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 58.8 bits (143), Expect = 5e-12
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP-NNPILKFQIVLITPHVG 59
G+ LVN RGGL+D + +A L+ G + G LDV ++PF P+ ++ TPH
Sbjct: 252 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 311
Query: 60 GVTEHSYRSTA-KVVGDVALQLHAGTPLRGIEPVN 93
+E + + ++ + P VN
Sbjct: 312 WYSEQASIEMREEAAREIRRAITGRIPDSLKNCVN 346
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 58.8 bits (143), Expect = 6e-12
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV-------------AWTKPFDPNNPIL 47
++VN+ RG L+D + V L+SG + G +DV P ++
Sbjct: 228 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 287
Query: 48 KFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLR 87
VL+TP T H+ R+ D L+L G
Sbjct: 288 ARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 58.4 bits (142), Expect = 7e-12
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV---------------AWTKPFDPNNP 45
G L+N RG ++D + + + G GLGLDV T
Sbjct: 223 GVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILE 282
Query: 46 ILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 85
+ V+ITPH+ T+ S + V G
Sbjct: 283 LACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDL 322
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 58.0 bits (141), Expect = 8e-12
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
+VN+ R ++ + +L+ DV W +P + +++PHV G
Sbjct: 202 NLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRN---AILSPHVAG 258
Query: 61 VTEHSYRSTAKVVGDVALQ 79
+ +A +
Sbjct: 259 GMS---GEIMDIAIQLAFE 274
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 57.6 bits (140), Expect = 1e-11
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV-------------AWTKPFDPNNPIL 47
G++++N R L+D + + L+SG L G+G+D + + +L
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285
Query: 48 KFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLR 87
V+++PH+ TE + + +
Sbjct: 286 GMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 57.2 bits (139), Expect = 2e-11
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G +VN RGG++D + L+SG G LDV +P + ++ + V+ PH+G
Sbjct: 248 GVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGA 306
Query: 61 VTE 63
T+
Sbjct: 307 STK 309
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 56.8 bits (138), Expect = 2e-11
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKP--FDPNNPILKFQIVLITPHV 58
++VN R ++ + + Y++ G + DV W +P + +LK + V++T H+
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 59 GGVTE 63
G T+
Sbjct: 285 GAQTK 289
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 56.5 bits (137), Expect = 3e-11
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKP----FDPNNPILKFQIVLITP 56
G+ L+N RG +D E +A L+ GHL G +DV +P + P+ + V++TP
Sbjct: 237 GAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTP 296
Query: 57 HVGGVTE 63
H+GG TE
Sbjct: 297 HIGGSTE 303
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 56.1 bits (136), Expect = 5e-11
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV------AWTKPFDPNNPILKFQIVLI 54
GSLL+N RG ++D +A L S HL G +DV + PF +P+ +F VL+
Sbjct: 226 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFT--SPLAEFDNVLL 283
Query: 55 TPHVGGVTE 63
TPH+GG T+
Sbjct: 284 TPHIGGSTQ 292
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 55.4 bits (134), Expect = 8e-11
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G ++VN RGGL+D +A + GH+ GLDV T+P ++P+ + V++TPH+G
Sbjct: 225 GVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGA 283
Query: 61 VTE 63
T
Sbjct: 284 STA 286
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 55.4 bits (134), Expect = 8e-11
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTK-PFDPNNPILKFQIVLITPHVG 59
G+ LVN RG ++D + + LE G + LDV W P +P L + ++ TPH+
Sbjct: 200 GTWLVNASRGAVVDNQALRRLLEGGADLEVALDV-WEGEP--QADPELAARCLIATPHIA 256
Query: 60 GVTE 63
G +
Sbjct: 257 GYSL 260
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 55.4 bits (134), Expect = 9e-11
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
GS +VN RG ++ + + L+SG L GLDV +P + +++ + V +T H+GG
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGG 307
Query: 61 VTEHSYRSTAKVVGD-VALQLHAGTPLRGIEPVN 93
V ++ ++ + L G PL + P
Sbjct: 308 VAIETFHEFERLTMTNIDRFLLQGKPL--LTPAG 339
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 54.9 bits (133), Expect = 1e-10
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G LVNI RG L+D + V ++ G L G DV +P + ++TPH G
Sbjct: 228 GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAG 287
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
+ + V L LRG P +
Sbjct: 288 LA---LEAQEDVGFRAVENLLKV--LRGEVPED 315
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 54.9 bits (133), Expect = 1e-10
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV---------AWTKPFDPNNPILKFQI 51
G++LVN RG L+D E V +ESG LGG G DV + NP+ + +
Sbjct: 227 GAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLV 286
Query: 52 -----VLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLR 87
VLITPH+G T+ + ++ +V L
Sbjct: 287 DLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 52.6 bits (127), Expect = 7e-10
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDV-------AWTKPFDPNNPILKFQIVL 53
G+LLVN RG ++D V LE G LGG DV +P + +L L
Sbjct: 229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL 288
Query: 54 ITPHVGGVTE 63
TPH+G
Sbjct: 289 FTPHIGSAVR 298
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 52.6 bits (127), Expect = 9e-10
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59
++ +NI RG +++ + + L SG + GLDV +P N+P+L + +I PH+G
Sbjct: 239 TAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIG 297
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 51.5 bits (124), Expect = 2e-09
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
++VN+ RG ++D + + L+SG + G GLDV +P + ++ PH G
Sbjct: 251 EGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP-AIRSEFHTTPNTVLMPHQGS 309
Query: 61 VTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
T + + K+V AG VN
Sbjct: 310 ATVETRMAMGKLVLANLAAHFAGEKA--PNTVN 340
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 50.7 bits (122), Expect = 4e-09
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G++L+N RG ++D + L +G + LDV W D N +L+ + T H+ G
Sbjct: 203 GAILINACRGPVVDNAALLARLNAGQPLSVVLDV-WEGEPDLNVALLEAVDIG-TSHIAG 260
Query: 61 VTE 63
T
Sbjct: 261 YTL 263
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 49.9 bits (120), Expect = 7e-09
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
++L+NI RG ++D + L+ G + G GLDV +P N + K V++TPH+G
Sbjct: 233 TAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGS 291
Query: 61 VTE 63
+
Sbjct: 292 ASF 294
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 49.5 bits (119), Expect = 9e-09
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 4 LVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTE 63
L+NI RG +D + L G LGG GLDV +P + + + V++ PHVG T
Sbjct: 247 LINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP-EVPEKLFGLENVVLLPHVGSGTV 305
Query: 64 HSYRSTAKVVGDVALQLHAGTPL 86
+ + A +V +G PL
Sbjct: 306 ETRKVMADLVVGNLEAHFSGKPL 328
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 48.7 bits (117), Expect = 2e-08
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G++L+N RG L+D E + L GHL G GLDV +P P +P+ +ITPH+G
Sbjct: 222 GAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGS 280
Query: 61 VTE 63
Sbjct: 281 AGR 283
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 48.7 bits (117), Expect = 2e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
G+++VN RG L+D E+V LE+G L G DV +P + N + PH+G
Sbjct: 231 GAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 289
Query: 61 VTE 63
Sbjct: 290 AAT 292
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 47.6 bits (114), Expect = 5e-08
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59
G++++NI RG L++ + + L S HL GLDV +P + + +TPH+G
Sbjct: 256 GAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIG 313
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 29.6 bits (66), Expect = 0.12
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
L + WT P + ILK+ I
Sbjct: 217 LKLTWTNPSIKSVIILKYNI 236
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel,
jelly-roll, scaffolding protein, structural P
rifampicin-resistance protein; 2.55A {Vaccinia virus}
PDB: 3saq_A 2ygc_A* 2ygb_A
Length = 576
Score = 29.3 bits (65), Expect = 0.17
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 30 LGLDVAWTKPFDPNNPILKF--QIVLITPHVGGVTEHSYRSTAKVVGD 75
L + V + N+PI Q+V++ + V+ S K++GD
Sbjct: 528 LSVRVVY-STMGVNHPIYYVQKQLVVVCNDLYKVSYDQGVSITKIMGD 574
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 28.5 bits (64), Expect = 0.27
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 59 GGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPV 92
GGV E + RS + L+ +RG+ +
Sbjct: 421 GGVMEAALRSAKDFAENAELEDIEYKQVRGLNGI 454
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 28.5 bits (64), Expect = 0.29
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 59 GGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPV 92
GGV E + R + V +RG++ +
Sbjct: 300 GGVMEAALRFAYEAVTGKKPDSWDFKAVRGLDGI 333
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme,
hydrogen peroxide, iron, metal-binding, mitochondrion;
HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A*
1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A*
2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A*
3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ...
Length = 294
Score = 27.8 bits (62), Expect = 0.39
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 9 RGGLLDYEVVA----HYLESGHLGGLGLDVAWTK 38
R + D EVVA H L HL G + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKRSGYEGPWGA 193
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase,
oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB:
3riw_A*
Length = 271
Score = 27.6 bits (62), Expect = 0.50
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 9 RGGLLDYEVVA----HYLESGHLGGLGLDVAWTKPFDPNNPILKF 49
R G D E VA H H+ G WT ++ F
Sbjct: 145 RLGFNDQETVALIGAHTCGECHIEFSGYHGPWT-----HDK-NGF 183
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 26.9 bits (60), Expect = 0.74
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 34 VAWTKPFDPNNPILKFQI 51
+ WTKPFD N+P++++ +
Sbjct: 38 LTWTKPFDGNSPLIRYIL 55
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 27.2 bits (59), Expect = 0.80
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
+ + W P +P+ P+ +++
Sbjct: 288 VTIVWDLPEEPDIPVHHYKV 307
Score = 25.3 bits (54), Expect = 4.4
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
L+V W+ F+ + + + +
Sbjct: 177 LEVKWSSKFNISIEPVIYVV 196
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 27.1 bits (59), Expect = 0.94
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 32 LDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQ-LHAGT 84
L + WT P + ILK+ I T ++ TA +Q L T
Sbjct: 218 LKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III,
protein binding; HET: MSE; 1.30A {Drosophila
melanogaster} SCOP: b.1.2.1
Length = 115
Score = 26.4 bits (58), Expect = 0.96
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 34 VAWTKPFDPNNPILKFQI 51
+ W P + PI+ F++
Sbjct: 21 LRWMVPRNDGLPIVIFKV 38
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 26.9 bits (58), Expect = 1.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 20 HYLESGHLGG 29
HY+ SG +GG
Sbjct: 310 HYITSGSMGG 319
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 26.6 bits (59), Expect = 1.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 34 VAWTKPFDPNNPILKFQI 51
+ W + D +PIL + I
Sbjct: 23 IHWEQQGDNRSPILHYTI 40
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 26.8 bits (58), Expect = 1.2
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 20 HYLESGHLGG 29
HY+ LGG
Sbjct: 289 HYITEAVLGG 298
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 26.8 bits (58), Expect = 1.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 20 HYLESGHLGG 29
HY SG LGG
Sbjct: 343 HYFTSGSLGG 352
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 26.5 bits (58), Expect = 1.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
L + WT P + ILK+ I
Sbjct: 122 LKLTWTNPSIKSVIILKYNI 141
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 25.2 bits (55), Expect = 2.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
++ TK D PIL++ +
Sbjct: 24 FKLSITKQDDGGAPILEYIV 43
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 25.3 bits (55), Expect = 3.1
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 57 HVGGVTEHSYRSTAKVVGDVALQLHAGTPLRGIEPVN 93
GGV E + R+ ++ L + + +RG++ +
Sbjct: 252 TTGGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIK 288
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 25.6 bits (55), Expect = 3.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 32 LDVAWTKPFDPNNPILKFQIV 52
+ + W P DPN I + +
Sbjct: 611 IILKWKPPSDPNGNITHYLVF 631
Score = 24.9 bits (53), Expect = 5.5
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 34 VAWTKPFDPNNPILKFQI 51
+ W +P +PN I+ +++
Sbjct: 811 LMWQEPKEPNGLIVLYEV 828
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 24.7 bits (54), Expect = 3.8
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
+ ++WT P +PN + + I
Sbjct: 33 IIMSWTPPLNPNIVVRGYII 52
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 24.7 bits (54), Expect = 3.9
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 34 VAWTKPFDPNNPILKFQI 51
++W P + I F +
Sbjct: 36 LSWRPPAEAKGNIQTFTV 53
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 25.1 bits (54), Expect = 4.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
L V+W+ P + + K+++
Sbjct: 457 LSVSWSIPPPQQSRVWKYEV 476
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 24.8 bits (54), Expect = 4.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 34 VAWTKPFDPNNPILKFQIV 52
+ W P + PI+ F++
Sbjct: 20 LRWMVPRNDGLPIVIFKVQ 38
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 24.8 bits (54), Expect = 4.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
++ TK D PIL++ +
Sbjct: 309 FKLSITKQDDGGAPILEYIV 328
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 24.3 bits (53), Expect = 4.8
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 34 VAWTKPFDPNNPILKFQI 51
+ W P + +L +++
Sbjct: 25 LQWHPPKELPGELLGYRL 42
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 24.9 bits (53), Expect = 5.4
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
L ++W + K ++
Sbjct: 225 LQLSWEPWQPGLHINQKCEL 244
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 24.4 bits (53), Expect = 5.6
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 32 LDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRST 69
L +AW P P+ +L +++ G + + T
Sbjct: 24 LSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKT 61
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 24.2 bits (53), Expect = 5.8
Identities = 2/18 (11%), Positives = 8/18 (44%)
Query: 34 VAWTKPFDPNNPILKFQI 51
+ + +D I ++ +
Sbjct: 36 LQFRPGYDGKTSISRWLV 53
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 24.3 bits (53), Expect = 5.8
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
+ ++W +P PN IL ++I
Sbjct: 24 ITLSWPQPEQPNGIILDYEI 43
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 24.2 bits (53), Expect = 6.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
+ + W +P PN IL+++I
Sbjct: 27 VSLLWQEPEQPNGIILEYEI 46
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 24.4 bits (53), Expect = 6.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 32 LDVAWTKPFDPNNPILKFQI 51
+ V K D +PI + +
Sbjct: 126 IKVNLIKQDDGGSPIRHYLV 145
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 24.2 bits (53), Expect = 6.6
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 34 VAWTKPFDPNNPILKFQI 51
V W P + ++++
Sbjct: 26 VNWEVPLSNGTDVTEYRL 43
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 24.3 bits (53), Expect = 6.7
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 34 VAWTKPFDPNNPILKFQI 51
++W P + I
Sbjct: 34 LSWQPGTPGTLPASAYII 51
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, cell adhesion; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 108
Score = 24.1 bits (52), Expect = 7.4
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 31 GLDVAWTKPFDPNNPILKFQI 51
G+ + W P + + +
Sbjct: 22 GVLLHWDPPELVPKRLDGYVL 42
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 23.6 bits (51), Expect = 9.4
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 34 VAWTKPFDPNNPILKFQI 51
++W +P P + +
Sbjct: 29 LSWKQPPLSTVPADGYIL 46
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 23.9 bits (52), Expect = 9.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 34 VAWTKPFDPNNPILKFQI 51
++WT D N+PI KF I
Sbjct: 35 LSWTPGDDNNSPITKFII 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.142 0.433
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,497,281
Number of extensions: 80547
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 80
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)