RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 044647
         (93 letters)



>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
           strain 101 [TaxId: 306]}
          Length = 188

 Score = 55.0 bits (131), Expect = 2e-11
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 1   GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
           G+ +VN  RG L D + VA  LESG L G   DV + +P   ++P        +TPH+ G
Sbjct: 129 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188


>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
           {Escherichia coli [TaxId: 562]}
          Length = 188

 Score = 52.7 bits (125), Expect = 1e-10
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1   GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNN----PILKFQIVLITP 56
           GSLL+N  RG ++D   +A  L S HL G  +DV  T+P   ++    P+ +F  VL+TP
Sbjct: 125 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 184

Query: 57  HVGG 60
           H+GG
Sbjct: 185 HIGG 188


>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
           {Hyphomicrobium methylovorum [TaxId: 84]}
          Length = 191

 Score = 51.4 bits (122), Expect = 5e-10
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVGG 60
           +++VN  RG L+D E+V   LE+G L   G DV   +P + N          + PH+G 
Sbjct: 133 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 190


>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
           (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 193

 Score = 48.5 bits (114), Expect = 5e-09
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 1   GSLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDP-NNPILKFQIVLITPHVG 59
           G+ LVN  RGGL+D + +A  L+ G + G  LDV  ++PF     P+     ++ TPH  
Sbjct: 133 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 192


>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
           Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 181

 Score = 47.1 bits (110), Expect = 2e-08
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 4   LVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTK-PFDPNNPILKFQIVLITPHVGG 60
            VN+ R  +LD + V   L+         DV W +  F  +        V+ TP V G
Sbjct: 124 FVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181


>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 184

 Score = 44.6 bits (104), Expect = 1e-07
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 2   SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNNPILKFQIVLITPHVG 59
            ++VN  RGGL+D   +A  +  GH+   GLDV  T+P   ++P+ +   V++TPH+G
Sbjct: 128 VIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLG 184


>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
           {Lactobacillus casei [TaxId: 1582]}
          Length = 199

 Score = 39.4 bits (90), Expect = 1e-05
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 2   SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWTKPFDPNN-------------PILK 48
           ++++N  R  L+D + +   L+SG L G+G+D    +  D  N              +L 
Sbjct: 127 AIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLG 186

Query: 49  FQIVLITPHVGG 60
              V+++PH+  
Sbjct: 187 MPNVVLSPHIAY 198


>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
           helveticus [TaxId: 1587]}
          Length = 197

 Score = 29.0 bits (63), Expect = 0.069
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 2   SLLVNIVRGGLLDYEVVAHYLESGHLGGLGLDVAWT-------------KPFDPNNPILK 48
            ++VN+ RG L+D + V   L+SG + G  +DV                 P      ++ 
Sbjct: 126 VVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIA 185

Query: 49  FQIVLITPHVG 59
              VL+TP   
Sbjct: 186 RPNVLVTPKTA 196


>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 108

 Score = 25.2 bits (54), Expect = 1.2
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 32 LDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGT 84
          +++ WTKPFD N+P++   I+ ++ +    T        K        L    
Sbjct: 29 INLTWTKPFDGNSPLI-RYILEMSENNAPWTVLLASVDPKATSVTVKGLVPAR 80


>d1vqqa3 e.3.1.1 (A:328-668) Penicillin binding protein 2a (PBP2A),
           C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 341

 Score = 24.8 bits (52), Expect = 1.8
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 28  GGLGLDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDVA 77
           G  G  + W   +D +NP +   I +      G+  ++ + + KV  ++ 
Sbjct: 281 GETGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELY 330


>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 98

 Score = 24.0 bits (51), Expect = 2.5
 Identities = 7/39 (17%), Positives = 17/39 (43%)

Query: 32 LDVAWTKPFDPNNPILKFQIVLITPHVGGVTEHSYRSTA 70
          + + W +P  PN  IL+++I          +  + ++  
Sbjct: 20 VSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVT 58


>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 196

 Score = 23.6 bits (49), Expect = 5.1
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 32 LDVAWTKPFDPNNPILKFQI 51
          + + W  P DPN  I  + +
Sbjct: 19 IILKWKPPSDPNGNITHYLV 38


>d1xqma_ d.22.1.1 (A:) GFP-like non-fluorescent chromoprotein FP595
           {Anemonia sulcata [TaxId: 6108]}
          Length = 230

 Score = 23.1 bits (50), Expect = 6.7
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 40  FDPNNPILKFQIVLITPHVGGVTEHSYRSTAKVVGDV--ALQLHAGTPLRG 88
           F  + P+++ ++    P     TE  Y     + G    AL+   G  L  
Sbjct: 124 FPADGPVMQNKVGRWEPG----TEIVYEVDGVLRGQSLMALKCPGGRHLTC 170


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId:
          562]}
          Length = 493

 Score = 23.4 bits (50), Expect = 6.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 66 YRSTAKVVGDVALQLH 81
          Y+ +A+VVGDV  + H
Sbjct: 34 YKKSARVVGDVIGKYH 49


>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
           formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 146

 Score = 22.7 bits (49), Expect = 7.2
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 29  GLGLDVAWTKPFDPNNPILKFQI 51
            LGLD     PF P   I+++ +
Sbjct: 126 RLGLDS--LAPFKPKERIIEYLV 146


>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein]
           desaturase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 267

 Score = 22.9 bits (49), Expect = 8.4
 Identities = 3/17 (17%), Positives = 6/17 (35%)

Query: 62  TEHSYRSTAKVVGDVAL 78
                R+ A  + +  L
Sbjct: 155 GAVFCRNLAAQIEEPIL 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.142    0.433 

Gapped
Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,379
Number of extensions: 14077
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 19
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)