BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044651
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 116/200 (58%), Gaps = 25/200 (12%)
Query: 141 GHLMRKF-------IKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEAL 193
G L+++F I EC C C NC NRVVQ GI V+LQ+++ ++ GWGVR L+ +
Sbjct: 88 GRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAK-MGWGVRALQTI 146
Query: 194 EKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKF 253
+GTF+CEYVGE++++ E D R ++ +Y LD KD E C+DA +
Sbjct: 147 PQGTFICEYVGELISDAEADVREDD------SYLFDLDN--------KDGEVYCIDARYY 192
Query: 254 GNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETH 313
GN++RFINH C D N+I + V + D + +AFF++R + EEL +DYG F D
Sbjct: 193 GNISRFINHLC-DPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS 251
Query: 314 PIKAFDCKCGSFFCSMKSQS 333
K F C+CGS C +++
Sbjct: 252 --KYFTCQCGSEKCKHSAEA 269
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 116/200 (58%), Gaps = 25/200 (12%)
Query: 141 GHLMRKF-------IKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEAL 193
G L+++F I EC C C NC NRVVQ GI V+LQ+++ ++ GWGVR L+ +
Sbjct: 90 GRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAK-MGWGVRALQTI 148
Query: 194 EKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKF 253
+GTF+CEYVGE++++ E D R ++ +Y LD KD E C+DA +
Sbjct: 149 PQGTFICEYVGELISDAEADVREDD------SYLFDLDN--------KDGEVYCIDARYY 194
Query: 254 GNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETH 313
GN++RFINH C D N+I + V + D + +AFF++R + EEL +DYG F D
Sbjct: 195 GNISRFINHLC-DPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS 253
Query: 314 PIKAFDCKCGSFFCSMKSQS 333
K F C+CGS C +++
Sbjct: 254 --KYFTCQCGSEKCKHSAEA 271
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 107/181 (59%), Gaps = 18/181 (9%)
Query: 147 FIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEV 206
I EC C C NC NRVVQ G+ +LQ+++ + GWGVR+L+ + GTFVCEYVGE+
Sbjct: 120 LIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGEL 178
Query: 207 VTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYD 266
+++ E D R E+ +Y L D D KD E C+DA +GNV+RFINH C +
Sbjct: 179 ISDSEADVREED------SY--LFDLD------NKDGEVYCIDARFYGNVSRFINHHC-E 223
Query: 267 ANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFF 326
NL+ + V + D + +AFF+TR +E E+L +DYG F D K F C+CGS
Sbjct: 224 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPK 281
Query: 327 C 327
C
Sbjct: 282 C 282
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 107/181 (59%), Gaps = 18/181 (9%)
Query: 147 FIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEV 206
I EC C C NC NRVVQ G+ +LQ+++ + GWGVR+L+ + GTFVCEYVGE+
Sbjct: 122 LIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGEL 180
Query: 207 VTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYD 266
+++ E D R E+ +Y L D D KD E C+DA +GNV+RFINH C +
Sbjct: 181 ISDSEADVREED------SY--LFDLD------NKDGEVYCIDARFYGNVSRFINHHC-E 225
Query: 267 ANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFF 326
NL+ + V + D + +AFF+TR +E E+L +DYG F D K F C+CGS
Sbjct: 226 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPK 283
Query: 327 C 327
C
Sbjct: 284 C 284
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 105/181 (58%), Gaps = 18/181 (9%)
Query: 147 FIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEV 206
I EC C C NC NRVVQ G+ +LQ+++ + GWGVR+L+ + GTFVCEYVGE+
Sbjct: 96 LIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGEL 154
Query: 207 VTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYD 266
+++ E D R E+ L D D KD E C+DA +GNV+RFINH C +
Sbjct: 155 ISDSEADVREED--------SYLFDLD------NKDGEVYCIDARFYGNVSRFINHHC-E 199
Query: 267 ANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFF 326
NL+ + V + D + +AFF+TR +E E+L +DYG F D K F C+CGS
Sbjct: 200 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPK 257
Query: 327 C 327
C
Sbjct: 258 C 258
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 106/181 (58%), Gaps = 18/181 (9%)
Query: 147 FIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEV 206
I EC C C NC NRVVQ G+ +LQ+++ + GWGVR+L+ + GTFVCEYVGE+
Sbjct: 121 LIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGEL 179
Query: 207 VTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYD 266
+++ E D R E+ +Y L D D KD E C+DA +GNV+RFINH C +
Sbjct: 180 ISDSEADVREED------SY--LFDLD------NKDGEVYCIDARFYGNVSRFINHHC-E 224
Query: 267 ANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFF 326
NL+ + V + D + +AFF+TR +E E+L +D G F D K F C+CGS
Sbjct: 225 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDAGERFWDIKG--KLFSCRCGSPK 282
Query: 327 C 327
C
Sbjct: 283 C 283
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 31/228 (13%)
Query: 112 FYCENCPLE-NRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGI 170
F+ + CP E L+ N+N + K + P I EC ++C C +C NR+VQ+G
Sbjct: 87 FFQKCCPAEAGVLLAYNKNQQIK--IPPGTP------IYECNSRCQCGPDCPNRIVQKGT 138
Query: 171 TVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLL 230
L +F+ S G+GWGV+TL +++ +FV EYVGEV+T++E + R + + TY L
Sbjct: 139 QYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITY--LF 196
Query: 231 DADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFT 290
D D+ S+ F +DA ++GNV+ F+NH C D NL V I+ D +A F+
Sbjct: 197 DLDYESDEFT-------VDAARYGNVSHFVNHSC-DPNLQVFNVFIDNLDTRLPRIALFS 248
Query: 291 TRKVEVNEELNWDY-----------GIDFSDETHPIKAFDCKCGSFFC 327
TR + EEL +DY ID S ++ CKCG+ C
Sbjct: 249 TRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTV-CKCGAVTC 295
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 25/193 (12%)
Query: 148 IKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVV 207
I EC + C CS+ C NRVVQRG T+ L++F+ E KGWGVR+L GTF+ Y+GEV+
Sbjct: 113 IYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKE-KGWGVRSLRFAPAGTFITCYLGEVI 171
Query: 208 TNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDA 267
T+ E +R++ + D TY L D D D +DA +G+V+RF NH C
Sbjct: 172 TSAEAAKRDKNYDDDGITY--LFDLD-----MFDDASEYTVDAQNYGDVSRFFNHSCSP- 223
Query: 268 NLIEIPVEIETPDHHY---YHVAFFTTRKVEVNEELNWDY--GIDFS------DETHPIK 316
I + +H + Y +AFF + ++ EEL +DY DFS + + I
Sbjct: 224 ---NIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRIS 280
Query: 317 AF--DCKCGSFFC 327
CKCGS C
Sbjct: 281 KLRRQCKCGSANC 293
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 150 ECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTN 209
EC C CS +C NRVVQ+G+ QVF+ + KGWG+RTLE + KG FVCEY GEV+
Sbjct: 104 ECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHK-KGWGLRTLEFIPKGRFVCEYAGEVLGF 162
Query: 210 QELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANL 269
E+ R + Y + + + + ++ +D T GN+ RF+NH C + NL
Sbjct: 163 SEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETF----VDPTYIGNIGRFLNHSC-EPNL 217
Query: 270 IEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDY 304
+ IPV I D +A F + + EEL++DY
Sbjct: 218 LMIPVRI---DSMVPKLALFAAKDIVPEEELSYDY 249
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 140/325 (43%), Gaps = 51/325 (15%)
Query: 16 PISLLNENGTSEL-PKFLYISKNTVYKNAHVNFSLARIGDEXXXXXXXXXXXXAPANCAC 74
PIS++N + L P F +I + + KN V R+G C+C
Sbjct: 11 PISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVG------------------CSC 52
Query: 75 TSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKR 134
S+ + Y+ LDE K+ +Y + + R R
Sbjct: 53 ASDE--ECMYSTCQCLDEMAPDSDEEADPYTRKKRFAYYSQG---------AKKGLLRDR 101
Query: 135 SVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALE 194
++ ++ I EC C CS +C NRVV+RG TV LQ+F+ + +GWGV+ ++
Sbjct: 102 VLQ------SQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKD-RGWGVKCPVNIK 154
Query: 195 KGTFVCEYVGEVVTNQELDERNEEFSGDRH--TYPVLLD--ADWASERFLKDEEALCLDA 250
+G FV Y+GE++T++E D R E + R Y LD +D S L + L +D
Sbjct: 155 RGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDG 214
Query: 251 TKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDY-----G 305
RFINH C D N+ + D H + +A F + + EL +DY G
Sbjct: 215 EYMSGPTRFINHSC-DPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTG 273
Query: 306 IDFSDETHPIKAFD---CKCGSFFC 327
++ SD P K + C CG+ C
Sbjct: 274 LE-SDAHDPSKISEMTKCLCGTAKC 297
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 33/239 (13%)
Query: 94 FLRESIAIIRRKNDKKHL----FYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIK 149
+ E++ + RK +K H CE PL +++ + + + + L R +
Sbjct: 42 LIEENVYLTERKKNKSHRDIKRMQCECTPL-------SKDERAQGEIACGEDCLNRLLMI 94
Query: 150 ECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTN 209
EC ++C C NR QR ++V +E KGWG+R + L TFV EY GEV+ +
Sbjct: 95 ECSSRCPNGDYCSNRRFQRKQHADVEVI-LTEKKGWGLRAAKDLPSNTFVLEYCGEVLDH 153
Query: 210 QELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANL 269
+E R +E++ +++ + + LK++E +DAT+ GN +RF+NH C
Sbjct: 154 KEFKARVKEYARNKNIHYYFMA--------LKNDEI--IDATQKGNCSRFMNHSC----- 198
Query: 270 IEIPVEIET-PDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFC 327
E E + + V FFTT+ V EL +DY + + +A C CGS C
Sbjct: 199 -EPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQF----QRYGKEAQKCFCGSANC 252
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 132 RKRSVKPCKGHLMRKFIKECWAK-CGCSLNCGNRVVQRGITVK-LQVFQASEGKGWGVRT 189
RK V C L R EC C C C N+ +QR V+ L+ F+A E KGWG+RT
Sbjct: 35 RKGCVDDC---LNRMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEE-KGWGIRT 90
Query: 190 LEALEKGTFVCEYVGEVVTNQELDERN-EEFSGDRHTYPVLLDADWASERFLKDEEALCL 248
E L+ G F+ EY+GEVV+ QE R E++ Y + LD+ + +
Sbjct: 91 KEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDS------------GMVI 138
Query: 249 DATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGI-D 307
D+ + GN ARFINH C D N + + Y + + + + EL +DY
Sbjct: 139 DSYRMGNEARFINHSC-DPNCEMQKWSV----NGVYRIGLYALKDMPAGTELTYDYNFHS 193
Query: 308 FSDETHPIKAFDCKCG 323
F+ E + CKCG
Sbjct: 194 FNVEKQQL----CKCG 205
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 184 GWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDE 243
G G+ ++ G V EY G V+ + + D+R + + D+ + +
Sbjct: 63 GRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYY-----------DSKGIGCYMFRID 111
Query: 244 EALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWD 303
++ +DAT GN ARFINH C + N + I+ H+ F RK+ EEL +D
Sbjct: 112 DSEVVDATMHGNAARFINHSC-EPNCYSRVINIDGQK----HIVIFAMRKIYRGEELTYD 166
Query: 304 YGIDFSDETHPIKAFDCKCGSFFC 327
Y D ++ + C CG+ C
Sbjct: 167 YKFPIEDASNKLP---CNCGAKKC 187
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Query: 143 LMRKFIKECWAK-CGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCE 201
+ R + EC C C N+ + ++++F+ + +GWG+RT ++KG FV E
Sbjct: 62 INRMLLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQ-RGWGLRTKTDIKKGEFVNE 120
Query: 202 YVGEVVTNQELDERNEEFSGDRHT--YPVLLDADWASERFLKDEEALCLDATKFGNVARF 259
YVGE++ +E R T Y + LD D +DA GN ARF
Sbjct: 121 YVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRI------------IDAGPKGNYARF 168
Query: 260 INHRCY-DANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAF 318
+NH C + + V +T V F ++ EL ++Y ++ +
Sbjct: 169 MNHCCQPNCETQKWSVNGDT------RVGLFALSDIKAGTELTFNYNLECLGNGKTV--- 219
Query: 319 DCKCGSFFCS 328
CKCG+ CS
Sbjct: 220 -CKCGAPNCS 228
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 181 EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL 240
+GKG GV + +G FV EY G+++ + +R ++ D T + + S+ +
Sbjct: 39 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTY- 97
Query: 241 KDEEALCLDATKFGN-VARFINH-RCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNE 298
C+DAT+ N + R INH +C + ++ P H+ +R + E
Sbjct: 98 ------CVDATRETNRLGRLINHSKCGNCQTKLHDID-GVP-----HLILIASRDIAAGE 145
Query: 299 ELNWDYG--IDFSDETHP 314
EL +DYG S E HP
Sbjct: 146 ELLYDYGDRSKASIEAHP 163
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 181 EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL 240
+GKG GV + +G FV EY G+++ + +R ++ D T + + S+ +
Sbjct: 33 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTY- 91
Query: 241 KDEEALCLDATKFGN-VARFINH-RCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNE 298
C+DAT+ N + R INH +C + ++ P H+ +R + E
Sbjct: 92 ------CVDATRETNRLGRLINHSKCGNCQTKLHDID-GVP-----HLILIASRDIAAGE 139
Query: 299 ELNWDYG--IDFSDETHP 314
EL +DYG S E HP
Sbjct: 140 ELLYDYGDRSKASIEAHP 157
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 181 EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL 240
+GKG GV + +G FV EY G+++ + +R ++ D T + + S+ +
Sbjct: 37 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTY- 95
Query: 241 KDEEALCLDATKFGN-VARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEE 299
C+DAT+ N + R INH ++ P H+ +R + EE
Sbjct: 96 ------CVDATRETNRLGRLINHSKSGNCQTKLHDIDGVP-----HLILIASRDIAAGEE 144
Query: 300 LNWDYG--IDFSDETHP 314
L +DYG S E HP
Sbjct: 145 LLYDYGDRSKASIEAHP 161
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 181 EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL 240
+GKG GV + +G FV EY G+++ + +R ++ D T + + S+ +
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTY- 96
Query: 241 KDEEALCLDATKFGN-VARFINH-RCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNE 298
C+DAT+ N + R INH +C + ++ P H+ +R + E
Sbjct: 97 ------CVDATRETNRLGRLINHSKCGNCQTKLHDID-GVP-----HLILIASRDIAAGE 144
Query: 299 ELNWDYG--IDFSDETHP 314
EL +DYG S E HP
Sbjct: 145 ELLFDYGDRSKASIEAHP 162
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 181 EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL 240
+GKG GV + +G FV E+ G+++ + +R ++ D T + + S+ +
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTY- 96
Query: 241 KDEEALCLDATKFGN-VARFINH-RCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNE 298
C+DAT+ N + R INH +C + ++ P H+ +R + E
Sbjct: 97 ------CVDATRETNRLGRLINHSKCGNCQTKLHDID-GVP-----HLILIASRDIAAGE 144
Query: 299 ELNWDYG--IDFSDETHP 314
EL +DYG S E HP
Sbjct: 145 ELLYDYGDRSKASIEAHP 162
>pdb|1M4Y|A Chain A, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|B Chain B, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|C Chain C, Crystal Structure Of Hslv From Thermotoga Maritima
Length = 171
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 188 RTLEALEKGTFVCEYVGEVVTNQELDERNE----EFSGDRHTYPVLLDADWASERFLKDE 243
R + L +G + + G V L +R E E+ G+ V L DW ++R L+
Sbjct: 32 RKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRL 91
Query: 244 EALCLDATK 252
EAL L A K
Sbjct: 92 EALLLVADK 100
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 88 GLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKF 147
G L+E+ L+ + + + K+ H NR+++ +N V HL R F
Sbjct: 160 GFLNEENLKSIVPVTKLKSKAPHW--------TNRILHEYKNLSTSEGVSKEMHHLQRMF 211
Query: 148 IKECW 152
++ CW
Sbjct: 212 LQNCW 216
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 88 GLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKF 147
G L+E+ L+ + + + K+ H NR+++ +N V HL R F
Sbjct: 160 GFLNEENLKSIVPVTKLKSKAPHW--------TNRILHEYKNLSTSEGVSKEMHHLQRMF 211
Query: 148 IKECW 152
++ CW
Sbjct: 212 LQNCW 216
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 93 KFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIK 149
+FLR+++A++ + + LF NC +E + G R+ V CK KFIK
Sbjct: 488 EFLRKNVAVV---SQEPALF---NCTIEENISLGKEGITREEMVAACKMANAEKFIK 538
>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase R596
Length = 295
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 296 VNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMK 330
VN +L DYG+ + D + ++F KCG ++K
Sbjct: 123 VNNKLEVDYGLSYEDVVNKYESFRAKCGKPVPTVK 157
>pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 345
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 164 RVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNE--EFSG 221
R +RG + + V E K + + +E +G VC G V++++ +D R+E FS
Sbjct: 10 RAGRRGPNLNI-VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68
Query: 222 DRH 224
D H
Sbjct: 69 DDH 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,949,879
Number of Sequences: 62578
Number of extensions: 415144
Number of successful extensions: 1155
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 27
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)