Query 044651
Match_columns 333
No_of_seqs 267 out of 1579
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1082 Histone H3 (Lys9) meth 100.0 2.9E-49 6.3E-54 381.4 17.0 272 3-332 60-354 (364)
2 KOG4442 Clathrin coat binding 100.0 7.3E-45 1.6E-49 358.3 15.7 170 141-332 87-260 (729)
3 KOG1141 Predicted histone meth 100.0 1E-41 2.3E-46 337.9 8.0 166 3-213 673-839 (1262)
4 KOG1080 Histone H3 (Lys4) meth 100.0 3.4E-30 7.5E-35 269.1 10.8 134 177-332 870-1005(1005)
5 KOG1079 Transcriptional repres 100.0 1.5E-29 3.3E-34 248.8 11.3 165 102-309 536-713 (739)
6 smart00317 SET SET (Su(var)3-9 99.9 3.4E-24 7.4E-29 172.4 13.9 114 173-304 1-116 (116)
7 KOG1083 Putative transcription 99.9 8.7E-24 1.9E-28 215.7 1.9 130 160-307 1165-1296(1306)
8 PF05033 Pre-SET: Pre-SET moti 99.8 4.4E-21 9.5E-26 153.0 7.2 102 7-164 1-103 (103)
9 KOG1085 Predicted methyltransf 99.8 3.8E-20 8.3E-25 166.7 9.6 125 168-307 252-379 (392)
10 smart00468 PreSET N-terminal t 99.8 1E-18 2.2E-23 138.2 6.9 78 5-87 1-79 (98)
11 COG2940 Proteins containing SE 99.7 7.5E-18 1.6E-22 168.7 2.4 148 169-332 329-480 (480)
12 PF00856 SET: SET domain; Int 99.5 2.7E-14 5.9E-19 120.0 8.8 117 184-305 1-162 (162)
13 KOG1081 Transcription factor N 99.0 7.1E-11 1.5E-15 117.2 2.3 146 148-332 289-437 (463)
14 KOG2589 Histone tail methylase 98.9 6.4E-10 1.4E-14 104.1 4.8 115 182-323 136-251 (453)
15 KOG1141 Predicted histone meth 98.9 2.7E-09 6E-14 108.2 9.0 286 3-331 875-1261(1262)
16 KOG2461 Transcription factor B 98.5 1.2E-07 2.6E-12 92.3 4.9 117 170-309 26-147 (396)
17 smart00570 AWS associated with 97.0 0.00021 4.5E-09 49.2 0.5 30 141-170 21-50 (51)
18 smart00508 PostSET Cysteine-ri 96.5 0.0013 2.7E-08 38.7 1.2 15 317-331 2-16 (26)
19 KOG2084 Predicted histone tail 90.2 0.44 9.5E-06 47.2 5.1 57 259-324 208-271 (482)
20 KOG1337 N-methyltransferase [G 83.5 0.89 1.9E-05 45.8 2.9 40 259-306 239-278 (472)
21 PF08666 SAF: SAF domain; Int 68.6 3.2 6.9E-05 29.0 1.5 16 287-302 3-18 (63)
22 smart00858 SAF This domain fam 41.6 17 0.00037 25.2 1.5 16 287-302 3-18 (64)
23 smart00317 SET SET (Su(var)3-9 37.3 30 0.00066 26.4 2.6 20 285-305 11-30 (116)
24 KOG1081 Transcription factor N 28.5 18 0.00039 36.5 -0.2 130 182-331 122-263 (463)
25 KOG2155 Tubulin-tyrosine ligas 27.4 33 0.00071 34.2 1.4 56 245-308 198-253 (631)
26 TIGR03569 NeuB_NnaB N-acetylne 22.0 44 0.00096 32.1 1.2 20 285-304 277-296 (329)
No 1
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.9e-49 Score=381.39 Aligned_cols=272 Identities=35% Similarity=0.608 Sum_probs=212.4
Q ss_pred ccccccCCCCCCCCeEEEcCCCCCCCCCcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCC-CccCcCCCCCC
Q 044651 3 IFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPA-NCACTSETRGD 81 (333)
Q Consensus 3 ~~~~Dis~g~e~~pi~~~N~vd~~~~p~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~-~C~C~~~~~~~ 81 (333)
....||+.|.|++||+++|+||++.++.|+|++..++.++ ... .......| .|...|..... .|.|.+.++..
T Consensus 60 ~~~~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~-~~~----~~~~~~~c-~C~~~~~~~~~~~C~C~~~n~~~ 133 (364)
T KOG1082|consen 60 SELEDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPG-ELS----DCENSTGC-RCCSSCSSVLPLTCLCERHNGGL 133 (364)
T ss_pred cccccccCccccCceeeeeeccCCccccceeccccccCcc-ccc----cCccccCC-CccCCCCCCCCccccChHhhCCc
Confidence 4678999999999999999999877799999999987764 111 11122235 77776654322 39999999888
Q ss_pred eeecCCCccchHHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCCCC
Q 044651 82 FAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNC 161 (333)
Q Consensus 82 ~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C 161 (333)
++|+.++... ..+..+..+|||+..|+|++.|
T Consensus 134 ~~~~~~~~~~------------------------------------------------~~~~~~~~i~EC~~~C~C~~~C 165 (364)
T KOG1082|consen 134 VAYTCDGDCG------------------------------------------------TLGKFKEPVFECSVACGCHPDC 165 (364)
T ss_pred cccccCCccc------------------------------------------------cccccCccccccccCCCCCCcC
Confidence 8887776421 0111246899999999999999
Q ss_pred CCcccccCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCC----CcceeEEeccccccc
Q 044651 162 GNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGD----RHTYPVLLDADWASE 237 (333)
Q Consensus 162 ~Nr~~q~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~----~~~y~~~l~~~~~~~ 237 (333)
.||++|+|.+.+|+||+|.+ +|||||+++.|++|+||+||+||+++.++++.+...+... ...+.+ +.+|...
T Consensus 166 ~nRv~q~g~~~~leIfrt~~-kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 242 (364)
T KOG1082|consen 166 ANRVVQKGLQFHLEVFRTPE-KGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIA--DREWVDE 242 (364)
T ss_pred cchhhccccccceEEEecCC-ceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhh--hcccccc
Confidence 99999999999999999986 9999999999999999999999999999998775433111 111111 2222221
Q ss_pred c-----------ccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCC
Q 044651 238 R-----------FLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGI 306 (333)
Q Consensus 238 ~-----------~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~ 306 (333)
. .......+.|||...||++|||||||. ||+.++.|+.++.++..++++|||+++|.||||||||||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~-PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~ 321 (364)
T KOG1082|consen 243 SPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCS-PNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK 321 (364)
T ss_pred ccccccccccccccCCCcceEEchhhcccccccccCCCC-ccceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence 1 122346799999999999999999995 9999999999988899999999999999999999999998
Q ss_pred CCC----CCC---CCCCCeeeeeCCCCCccccC
Q 044651 307 DFS----DET---HPIKAFDCKCGSFFCSMKSQ 332 (333)
Q Consensus 307 ~~~----~~~---~~~~~~~C~Cgs~~Crg~~~ 332 (333)
.+. ... .+.....|.||+.+||+++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~ 354 (364)
T KOG1082|consen 322 AYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLG 354 (364)
T ss_pred cccccccccccccccccchhhcCCCHHhCcccC
Confidence 754 111 12346789999999999874
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-45 Score=358.31 Aligned_cols=170 Identities=34% Similarity=0.592 Sum_probs=156.3
Q ss_pred CccccceeeccCc-cCC-CCCCCCCcccccCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhh
Q 044651 141 GHLMRKFIKECWA-KCG-CSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEE 218 (333)
Q Consensus 141 ~~~~~~~i~EC~~-~C~-C~~~C~Nr~~q~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~ 218 (333)
+|+++....||++ .|. |+..|.|+.+|+....+++||.|. +|||||||.++|++|+||+||.||||+..|+..|...
T Consensus 87 ~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te-~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~ 165 (729)
T KOG4442|consen 87 DCINRMTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTE-KKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKR 165 (729)
T ss_pred cccchhhhcccCCccCCCccccccchhhhhhccCceeEEEec-CcccceeeccccCCCcEEeeeccccccHHHHHHHHHH
Confidence 5788889999998 898 999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred h--cCCCcceeEEeccccccccccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCC
Q 044651 219 F--SGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEV 296 (333)
Q Consensus 219 ~--~~~~~~y~~~l~~~~~~~~~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~ 296 (333)
| +...+.|+|.|... ++|||+.+||+|||||||| +||+.++.|.|.+ ..||+|||.|.|++
T Consensus 166 Y~~d~~kh~Yfm~L~~~------------e~IDAT~KGnlaRFiNHSC-~PNa~~~KWtV~~----~lRvGiFakk~I~~ 228 (729)
T KOG4442|consen 166 YAKDGIKHYYFMALQGG------------EYIDATKKGNLARFINHSC-DPNAEVQKWTVPD----ELRVGIFAKKVIKP 228 (729)
T ss_pred HHhcCCceEEEEEecCC------------ceecccccCcHHHhhcCCC-CCCceeeeeeeCC----eeEEEEeEecccCC
Confidence 8 55677888877664 8999999999999999999 5999999998864 67999999999999
Q ss_pred CCeEEEecCCCCCCCCCCCCCeeeeeCCCCCccccC
Q 044651 297 NEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQ 332 (333)
Q Consensus 297 GEELt~dYg~~~~~~~~~~~~~~C~Cgs~~Crg~~~ 332 (333)
||||||||+++..+.+ ..+|.||+++|+|+|+
T Consensus 229 GEEITFDYqf~rYGr~----AQ~CyCgeanC~G~IG 260 (729)
T KOG4442|consen 229 GEEITFDYQFDRYGRD----AQPCYCGEANCRGWIG 260 (729)
T ss_pred CceeeEeccccccccc----ccccccCCcccccccC
Confidence 9999999999876654 6789999999999986
No 3
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-41 Score=337.88 Aligned_cols=166 Identities=33% Similarity=0.526 Sum_probs=122.6
Q ss_pred ccccccCCCCCCCCeEEEcCCCCCCCCCcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCCCccCcCCCCCCe
Q 044651 3 IFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDF 82 (333)
Q Consensus 3 ~~~~Dis~g~e~~pi~~~N~vd~~~~p~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~~C~C~~~~~~~~ 82 (333)
+++.||+.|+|.+||..+|++|+.++|.|.|....+...+...+. +..+.+.| +|..+|.+ .++|+|.|++...-
T Consensus 673 ~~~~Di~~g~e~vpis~~neids~~lpq~ay~K~~ip~~~nl~n~---~~~fl~sc-dc~~gcid-~~kcachQltvk~~ 747 (1262)
T KOG1141|consen 673 NRCTDIPCGREHVPISEKNEIDSHRLPQAAYKKHMIPTNNNLSNR---RKDFLQSC-DCPTGCID-SMKCACHQLTVKKK 747 (1262)
T ss_pred ceeccccCCccccccceeecccCcCCccchhheeeccCCCccccc---ChhhhhcC-CCCcchhh-hhhhhHHHHHHHhh
Confidence 468999999999999999999999999999998876543322222 12233457 99999986 47999999874433
Q ss_pred eecCCCccchHHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCC-CC
Q 044651 83 AYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSL-NC 161 (333)
Q Consensus 83 ~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~-~C 161 (333)
+....+-+.+. +|+. ..+..+ .....+|||+..|+|.+ .|
T Consensus 748 ~t~p~~~v~~t-------------------------------~gyk---yKRl~e-----~~ptg~yEc~k~ckc~~~~C 788 (1262)
T KOG1141|consen 748 TTGPNQNVAST-------------------------------NGYK---YKRLIE-----IRPTGPYECLKACKCCGPDC 788 (1262)
T ss_pred ccCCCcccccC-------------------------------cchh---hHHHHH-----hcCCCHHHHHHhhccCcHHH
Confidence 33333322110 0111 011111 12356899999999876 69
Q ss_pred CCcccccCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHH
Q 044651 162 GNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELD 213 (333)
Q Consensus 162 ~Nr~~q~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~ 213 (333)
.||++|+|.+++|++|+|. .||||++.+.+|.+|.||+.|.|.++++.-.+
T Consensus 789 ~nrmvqhg~qvRlq~fkt~-~kGWg~rclddi~~g~fVciy~g~~l~~~~sd 839 (1262)
T KOG1141|consen 789 LNRMVQHGYQVRLQRFKTI-HKGWGRRCLDDITGGNFVCIYPGGALLHQISD 839 (1262)
T ss_pred HHHHhhcCceeEeeecccc-ccccceEeeeecCCceEEEEecchhhhhhhch
Confidence 9999999999999999995 69999999999999999999999998776443
No 4
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=3.4e-30 Score=269.15 Aligned_cols=134 Identities=33% Similarity=0.610 Sum_probs=118.9
Q ss_pred EEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhh--cCCCcceeEEeccccccccccccCcceEeeccccC
Q 044651 177 FQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEF--SGDRHTYPVLLDADWASERFLKDEEALCLDATKFG 254 (333)
Q Consensus 177 ~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~--~~~~~~y~~~l~~~~~~~~~~~~~~~~~IDa~~~G 254 (333)
|..+..+||||||+++|.+|++|.||+||+|...-++.|+..| .....+|+|.+|.+ ++|||+.+|
T Consensus 870 F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~------------~ViDAtk~g 937 (1005)
T KOG1080|consen 870 FGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDE------------VVVDATKKG 937 (1005)
T ss_pred cccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccc------------eEEeccccC
Confidence 4455579999999999999999999999999999999998888 33378999988764 899999999
Q ss_pred CcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCCCCCCCCCCeeeeeCCCCCccccC
Q 044651 255 NVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQ 332 (333)
Q Consensus 255 N~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~~~~~~~~~~~C~Cgs~~Crg~~~ 332 (333)
|+||||||||. |||....+.|++. .+|++||.|+|.+||||||||.+...+. ..+|+|||++|||.+.
T Consensus 938 niAr~InHsC~-PNCyakvi~V~g~----~~IvIyakr~I~~~EElTYDYkF~~e~~-----kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 938 NIARFINHSCN-PNCYAKVITVEGD----KRIVIYSKRDIAAGEELTYDYKFPTEDD-----KIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred chhheeecccC-CCceeeEEEecCe----eEEEEEEecccccCceeeeecccccccc-----ccccccCCCccccccC
Confidence 99999999995 9999999999864 4999999999999999999999876654 5789999999999763
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.96 E-value=1.5e-29 Score=248.78 Aligned_cols=165 Identities=27% Similarity=0.488 Sum_probs=142.4
Q ss_pred HHhcCCccccccc--cCCCcccccccCCcccccccCCCCCcCccccceeeccCc-cCCC-C---------CCCCCccccc
Q 044651 102 IRRKNDKKHLFYC--ENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWA-KCGC-S---------LNCGNRVVQR 168 (333)
Q Consensus 102 ~~~~~~~~~~~~c--~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~-~C~C-~---------~~C~Nr~~q~ 168 (333)
..|+|+++...+| +.||+.. ...||.+ .|.+ + -+|.|.-+|+
T Consensus 536 ~nrF~GC~Ck~QC~tkqCpC~~-------------------------A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~ 590 (739)
T KOG1079|consen 536 RNRFPGCRCKAQCNTKQCPCYL-------------------------AVRECDPDVCLMCGNVDHFDSSKISCKNTNLQR 590 (739)
T ss_pred HhcCCCCCcccccccCcCchhh-------------------------hccccCchHHhccCcccccccCccccccchhhh
Confidence 3467887766677 3677664 5678884 5754 2 2799999999
Q ss_pred CCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCCCcceeEEeccccccccccccCcceEe
Q 044651 169 GITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCL 248 (333)
Q Consensus 169 g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~I 248 (333)
+.+.++-|..+ ...|||+|+++.+.|++||.||+||+|+.+||++|...|+...-+|+|.|..+ ++|
T Consensus 591 ~~qkr~llapS-dVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~d------------yvi 657 (739)
T KOG1079|consen 591 GEQKRVLLAPS-DVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNND------------YVI 657 (739)
T ss_pred hhhcceeechh-hccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeecccc------------ceE
Confidence 99999988644 68999999999999999999999999999999999999999999999988764 899
Q ss_pred eccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCC
Q 044651 249 DATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFS 309 (333)
Q Consensus 249 Da~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~ 309 (333)
||+++||.+||+|||- +|||....+.|.+. .+|+|||.|.|.+||||||||.++-.
T Consensus 658 Ds~rkGnk~rFANHS~-nPNCYAkvm~V~Gd----hRIGifAkRaIeagEELffDYrYs~~ 713 (739)
T KOG1079|consen 658 DSTRKGNKIRFANHSF-NPNCYAKVMMVAGD----HRIGIFAKRAIEAGEELFFDYRYSPE 713 (739)
T ss_pred eeeeecchhhhccCCC-CCCcEEEEEEecCC----cceeeeehhhcccCceeeeeeccCcc
Confidence 9999999999999999 59999988888653 39999999999999999999998654
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.92 E-value=3.4e-24 Score=172.40 Aligned_cols=114 Identities=44% Similarity=0.821 Sum_probs=93.2
Q ss_pred ceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCCC--cceeEEeccccccccccccCcceEeec
Q 044651 173 KLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDR--HTYPVLLDADWASERFLKDEEALCLDA 250 (333)
Q Consensus 173 ~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~~--~~y~~~l~~~~~~~~~~~~~~~~~IDa 250 (333)
+++++++. ++|+||+|+++|++|++|++|.|+++...++..+...+.... ..|.+.... .++||+
T Consensus 1 ~~~~~~~~-~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~id~ 67 (116)
T smart00317 1 KLEVFKSP-GKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDS------------DLCIDA 67 (116)
T ss_pred CcEEEecC-CCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCC------------CEEEeC
Confidence 35677774 799999999999999999999999999988777643221222 355555432 379999
Q ss_pred cccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEec
Q 044651 251 TKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDY 304 (333)
Q Consensus 251 ~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dY 304 (333)
...||++|||||||. ||+.+..+..++.. ++.|+|+|||++|||||++|
T Consensus 68 ~~~~~~~~~iNHsc~-pN~~~~~~~~~~~~----~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCE-PNCELLFVEVNGDS----RIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCC-CCEEEEEEEECCCc----EEEEEECCCcCCCCEEeecC
Confidence 999999999999995 99999888775432 89999999999999999999
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.88 E-value=8.7e-24 Score=215.65 Aligned_cols=130 Identities=38% Similarity=0.704 Sum_probs=111.3
Q ss_pred CCCCcccc-cCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHH-HhhhcCCCcceeEEeccccccc
Q 044651 160 NCGNRVVQ-RGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDER-NEEFSGDRHTYPVLLDADWASE 237 (333)
Q Consensus 160 ~C~Nr~~q-~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r-~~~~~~~~~~y~~~l~~~~~~~ 237 (333)
.|.|+.+| ++.-.+|+||+.. .+||||+|.++|++|+||+||+|||++.++.+.+ ...+-.+.+.|...++.
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp-~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p----- 1238 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGP-KKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDP----- 1238 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccC-CCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCc-----
Confidence 38888877 4667789999986 6999999999999999999999999999998877 23334555566665554
Q ss_pred cccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCC
Q 044651 238 RFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGID 307 (333)
Q Consensus 238 ~~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~ 307 (333)
..+||+.++||.+||+||||. ||+..+.+-+. +.+||+|||+|||++|||||+||+..
T Consensus 1239 -------~l~id~~R~~n~~RfinhscK-PNc~~qkwSVN----G~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1239 -------GLFIDIPRMGNGARFINHSCK-PNCEMQKWSVN----GEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred -------cccCChhhccccccccccccC-CCCcccccccc----ceeeeeeeecCCCCCCceEEEecccc
Confidence 489999999999999999996 99999998886 56899999999999999999999854
No 8
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.84 E-value=4.4e-21 Score=153.03 Aligned_cols=102 Identities=37% Similarity=0.727 Sum_probs=67.7
Q ss_pred ccCCCCCCCCeEEEcCCCCCCC-CCcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCCCccCcCCCCCCeeec
Q 044651 7 DITRGEEKQPISLLNENGTSEL-PKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYT 85 (333)
Q Consensus 7 Dis~g~e~~pi~~~N~vd~~~~-p~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~~C~C~~~~~~~~~y~ 85 (333)
|||+|+|.+||+++|+||+++| |.|+|++++++.++.. .... .....| +|.++|. .+.+|+|.++++..++|+
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~-~~~~---~~~~~C-~C~~~C~-~~~~C~C~~~~~~~~~Y~ 74 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVP-DIDP---EFLQGC-DCSGDCS-NPSNCECLQRNGGIFAYD 74 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS--TBG---GGTS-----SSSST-CTTTSHHHCCTSSS-SB-
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCcc-cccc---ccCccC-ccCCCCC-CCCCCcCccccCcccccc
Confidence 8999999999999999999987 5999999999887543 2221 122346 9999994 356999999998889999
Q ss_pred CCCccchHHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCCCCCCc
Q 044651 86 AAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNR 164 (333)
Q Consensus 86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~Nr 164 (333)
.+|+|... ...+||||++.|+|+..|+||
T Consensus 75 ~~g~l~~~--------------------------------------------------~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 75 SNGRLRIP--------------------------------------------------DKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp TTSSBSSS--------------------------------------------------STSEEE---TTSSS-TTSTT-
T ss_pred CCCcCccC--------------------------------------------------CCCeEEeCCCCCCCCCCCCCC
Confidence 99998510 135899999999999999998
No 9
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=166.70 Aligned_cols=125 Identities=33% Similarity=0.530 Sum_probs=103.8
Q ss_pred cCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhh--cCCCcceeEEeccccccccccccCcc
Q 044651 168 RGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEF--SGDRHTYPVLLDADWASERFLKDEEA 245 (333)
Q Consensus 168 ~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~--~~~~~~y~~~l~~~~~~~~~~~~~~~ 245 (333)
.|....|.+... ++||.||+|...+++|+||.||.|.+|...|+..|+..| +.....|+|.+.-. ...
T Consensus 252 ~g~~egl~~~~~-dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~---------sk~ 321 (392)
T KOG1085|consen 252 KGTNEGLLEVYK-DGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN---------SKK 321 (392)
T ss_pred hccccceeEEee-ccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc---------Cee
Confidence 455666666655 479999999999999999999999999999999999988 34444566655432 346
Q ss_pred eEeecccc-CCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCC
Q 044651 246 LCLDATKF-GNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGID 307 (333)
Q Consensus 246 ~~IDa~~~-GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~ 307 (333)
|+|||+.- +-++|.||||=. +|+....|.+++ .||+.++|.|||.+||||++|||+-
T Consensus 322 yCiDAT~et~~lGRLINHS~~-gNl~TKvv~Idg----~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 322 YCIDATKETPWLGRLINHSVR-GNLKTKVVEIDG----SPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred eeeecccccccchhhhccccc-CcceeeEEEecC----CceEEEEeccccccchhhhhhcccc
Confidence 99999985 457999999996 999999888874 5799999999999999999999964
No 10
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.76 E-value=1e-18 Score=138.25 Aligned_cols=78 Identities=32% Similarity=0.635 Sum_probs=60.7
Q ss_pred ccccCCCCCCCCeEEEcCCCCCCCC-CcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCCCccCcCCCCCCee
Q 044651 5 VEDITRGEEKQPISLLNENGTSELP-KFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFA 83 (333)
Q Consensus 5 ~~Dis~g~e~~pi~~~N~vd~~~~p-~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~~C~C~~~~~~~~~ 83 (333)
+.|||+|+|++||+++|+||++.|| .|+||+++++.++..+.. .......| +|.++|.+. ..|.|++++++.++
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~---~~~~~~gC-~C~~~C~~~-~~C~C~~~~~~~~~ 75 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDR---SPSPLVGC-SCSGDCSSS-NKCECARKNGGEFA 75 (98)
T ss_pred CccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCccccc---CCCCCCCC-cCCCCCCCC-CcCCcHhhcCCccC
Confidence 4799999999999999999998874 999999998776543111 12223346 999999864 34999999999999
Q ss_pred ecCC
Q 044651 84 YTAA 87 (333)
Q Consensus 84 y~~~ 87 (333)
|+..
T Consensus 76 Y~~~ 79 (98)
T smart00468 76 YELN 79 (98)
T ss_pred cccC
Confidence 9533
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.68 E-value=7.5e-18 Score=168.69 Aligned_cols=148 Identities=34% Similarity=0.586 Sum_probs=112.4
Q ss_pred CCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCCCcceeEEeccccccccccccCcceEe
Q 044651 169 GITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCL 248 (333)
Q Consensus 169 g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~I 248 (333)
....+..+ .....+||||||++.|++|++|.+|.|+++...++..+...+......+.|.+-. ....++
T Consensus 329 ~~~~~~~~-~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 397 (480)
T COG2940 329 KRREPNVV-QESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLE----------DKDKVR 397 (480)
T ss_pred cccchhhh-hhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhcc----------ccchhh
Confidence 33334434 3445799999999999999999999999999988877765442222222221111 115789
Q ss_pred eccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCCCCC----CCCCCeeeeeCC
Q 044651 249 DATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDET----HPIKAFDCKCGS 324 (333)
Q Consensus 249 Da~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~~~~----~~~~~~~C~Cgs 324 (333)
|+...|+.+|||||||. ||+......+.+ ..++.++|+|||.+||||++||+...+... .......|.||+
T Consensus 398 d~~~~g~~~r~~nHS~~-pN~~~~~~~~~g----~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~ 472 (480)
T COG2940 398 DSQKAGDVARFINHSCT-PNCEASPIEVNG----IFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGE 472 (480)
T ss_pred hhhhcccccceeecCCC-CCcceecccccc----cceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCC
Confidence 99999999999999996 999987766542 568999999999999999999999887644 112367899999
Q ss_pred CCCccccC
Q 044651 325 FFCSMKSQ 332 (333)
Q Consensus 325 ~~Crg~~~ 332 (333)
..|++++.
T Consensus 473 ~~~~~~~~ 480 (480)
T COG2940 473 DRCSHTMS 480 (480)
T ss_pred CccCCCCC
Confidence 99999873
No 12
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.53 E-value=2.7e-14 Score=119.95 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=71.8
Q ss_pred ceeEEeCccccCCcEEEEEeceeccHHHHHHHHh---hh--cCCCc---------------------------------c
Q 044651 184 GWGVRTLEALEKGTFVCEYVGEVVTNQELDERNE---EF--SGDRH---------------------------------T 225 (333)
Q Consensus 184 G~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~---~~--~~~~~---------------------------------~ 225 (333)
|+||+|+++|++|++|++..+.+++..+...... .. ..... .
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999877644200 00 00000 0
Q ss_pred eeEEeccc------ccc-ccccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCC
Q 044651 226 YPVLLDAD------WAS-ERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNE 298 (333)
Q Consensus 226 y~~~l~~~------~~~-~~~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GE 298 (333)
........ +.. ............++.....++.|+||||. ||+.+........+ .+.|.|+|||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~-pn~~~~~~~~~~~~----~~~~~a~r~I~~Ge 155 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCD-PNCEVSFDFDGDGG----CLVVRATRDIKKGE 155 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESS-TSEEEEEEEETTTT----EEEEEESS-B-TTS
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccc-cccceeeEeecccc----eEEEEECCccCCCC
Confidence 00000000 000 00000112244566677789999999995 99998876543333 89999999999999
Q ss_pred eEEEecC
Q 044651 299 ELNWDYG 305 (333)
Q Consensus 299 ELt~dYg 305 (333)
|||++||
T Consensus 156 Ei~isYG 162 (162)
T PF00856_consen 156 EIFISYG 162 (162)
T ss_dssp BEEEEST
T ss_pred EEEEEEC
Confidence 9999997
No 13
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.04 E-value=7.1e-11 Score=117.17 Aligned_cols=146 Identities=26% Similarity=0.437 Sum_probs=104.3
Q ss_pred eeccC-ccCCCCCCCCCcccccCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhc--CCCc
Q 044651 148 IKECW-AKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFS--GDRH 224 (333)
Q Consensus 148 i~EC~-~~C~C~~~C~Nr~~q~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~--~~~~ 224 (333)
.+||. ..|.+...|.|+......... . .+ +|..+|.+| +|++++..+...+..... ....
T Consensus 289 ~~~~~p~~~~~~~~~~~~~~sk~~~~e-------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~ 351 (463)
T KOG1081|consen 289 AYEVHPKVCSAEERCHNQQFSKESYPE-------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVD 351 (463)
T ss_pred hhhhcccccccccccccchhhhhcccc-------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhh
Confidence 35554 568888888887765443222 2 22 888899998 899999988766554331 1122
Q ss_pred ceeEEeccccccccccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEec
Q 044651 225 TYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDY 304 (333)
Q Consensus 225 ~y~~~l~~~~~~~~~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dY 304 (333)
.|+..++.+ ..||+...||.+||+||||+ ||+......+. ...++.++|.+.|++|||||++|
T Consensus 352 ~~~~~~e~~------------~~id~~~~~n~sr~~nh~~~-~~v~~~k~~~~----~~t~~~~~a~~~i~~g~e~t~~~ 414 (463)
T KOG1081|consen 352 FYMVFIQKD------------RIIDAGPKGNYSRFLNHSCQ-PNVETEKWQVI----GDTRVGLFAPRQIEAGEELTFNY 414 (463)
T ss_pred hhhhhhhcc------------cccccccccchhhhhcccCC-Cceeechhhee----cccccccccccccccchhhhhee
Confidence 222222221 28999999999999999995 99987665543 33589999999999999999999
Q ss_pred CCCCCCCCCCCCCeeeeeCCCCCccccC
Q 044651 305 GIDFSDETHPIKAFDCKCGSFFCSMKSQ 332 (333)
Q Consensus 305 g~~~~~~~~~~~~~~C~Cgs~~Crg~~~ 332 (333)
...-.. ..+.|.|++.+|.+.+.
T Consensus 415 n~~~~~-----~~~~~~~~~e~~~~~~~ 437 (463)
T KOG1081|consen 415 NGNCEG-----NEKRCCCGSENCTETKG 437 (463)
T ss_pred eccccC-----CcceEeecccccccCCc
Confidence 865332 35689999999998765
No 14
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.95 E-value=6.4e-10 Score=104.06 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=81.9
Q ss_pred CcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhh-cCCCcceeEEeccccccccccccCcceEeeccccCCcceee
Q 044651 182 GKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEF-SGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFI 260 (333)
Q Consensus 182 ~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~-~~~~~~y~~~l~~~~~~~~~~~~~~~~~IDa~~~GN~aRFi 260 (333)
..|--|.|++.+++|+-|-..+|-|..-.+++++.... .....+.++..... -|..+=.-|+||
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---------------caqLwLGPaafI 200 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---------------CAQLWLGPAAFI 200 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---------------hhhheeccHHhh
Confidence 46777889999999999999999997777777764332 22222222221111 123344568999
Q ss_pred ccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCCCCCCCCCCeeeeeC
Q 044651 261 NHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCG 323 (333)
Q Consensus 261 NHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~~~~~~~~~~~C~Cg 323 (333)
||-|. |||+++.. +.-.+.+-++|||+||||||.-||.+|.... ...|.|-
T Consensus 201 NHDCr-pnCkFvs~-------g~~tacvkvlRDIePGeEITcFYgs~fFG~~----N~~CeC~ 251 (453)
T KOG2589|consen 201 NHDCR-PNCKFVST-------GRDTACVKVLRDIEPGEEITCFYGSGFFGEN----NEECECV 251 (453)
T ss_pred cCCCC-CCceeecC-------CCceeeeehhhcCCCCceeEEeecccccCCC----CceeEEe
Confidence 99996 99987642 1237899999999999999999999998775 4456664
No 15
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.94 E-value=2.7e-09 Score=108.21 Aligned_cols=286 Identities=29% Similarity=0.497 Sum_probs=193.6
Q ss_pred ccccccCCCCCCCCeEEEcCCCCCCCCCcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCCCccCcCCCCCCe
Q 044651 3 IFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDF 82 (333)
Q Consensus 3 ~~~~Dis~g~e~~pi~~~N~vd~~~~p~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~~C~C~~~~~~~~ 82 (333)
+-.+|.+.|.+.+|||.+|.+|...||.-+|....+.+ .+.+...-.+-+....| +|.++|.+. .+|.|.+......
T Consensus 875 ~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~-~~~~~~s~~~~~~~~~~-s~d~hp~d~-~~~~~~~~~~~~~ 951 (1262)
T KOG1141|consen 875 LDVADFSLGTSGIPIPLVNSVDNDEPPSCEDSKRRFQY-NDQVDISSVSRDFCSGC-SCDGHPSDA-SKCECQQLSIEAM 951 (1262)
T ss_pred cchhhhhccccCCCCccccccccCCCccccccceeecc-cccchhhhhcccccccc-ccCCCCccc-CcccCCCCChhhh
Confidence 45689999999999999999999999966666554422 12222221222322335 899999765 5899988763211
Q ss_pred eecCCCccchHHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCCCCC
Q 044651 83 AYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCG 162 (333)
Q Consensus 83 ~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~ 162 (333)
+...+++..+ |.. .+-++ -+.|.. ....+.+||+..|.|...|.
T Consensus 952 -----~~cpp~~s~d----------------------------~~~-~~~eS-~~~~ns-~~~~~f~e~~~hss~~~~e~ 995 (1262)
T KOG1141|consen 952 -----KRCPPNLSFD----------------------------GHD-ELYES-SEKQNS-FLKLFFFECNDHSSCHRKEY 995 (1262)
T ss_pred -----cCCCCccccC----------------------------chh-hhhhh-hhhcch-hhhccceeccccchhccccc
Confidence 1111111000 000 00000 001111 12356789999999999999
Q ss_pred CcccccCCccceEE--------EEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhh---------------
Q 044651 163 NRVVQRGITVKLQV--------FQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEF--------------- 219 (333)
Q Consensus 163 Nr~~q~g~~~~l~v--------~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~--------------- 219 (333)
|+++|.+.+.++++ |++. ..|||+++..+|+.-+||++|+|...+..-+.+.....
T Consensus 996 ~~~v~~~~~~~me~~s~~~l~i~~~~-~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~ 1074 (1262)
T KOG1141|consen 996 NRVVQNNIKYPMEVSSFNDLQIFKTA-QSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVE 1074 (1262)
T ss_pred chhhhcCCccceeeeecccccccccc-cccccccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhh
Confidence 99999998887765 4554 47999999999999999999999998876554322110
Q ss_pred ------------cCCCcceeEE--ecccc----------------cc---------------------------------
Q 044651 220 ------------SGDRHTYPVL--LDADW----------------AS--------------------------------- 236 (333)
Q Consensus 220 ------------~~~~~~y~~~--l~~~~----------------~~--------------------------------- 236 (333)
..+...|.-. .+.+- +.
T Consensus 1075 l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~ 1154 (1262)
T KOG1141|consen 1075 LEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSM 1154 (1262)
T ss_pred hhhcccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchh
Confidence 0000000000 00000 00
Q ss_pred ---------------ccccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEE
Q 044651 237 ---------------ERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELN 301 (333)
Q Consensus 237 ---------------~~~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt 301 (333)
.........|+|||+..||++||+|||| +||+.+++|+++++|.++|++||||.|-|+||+|||
T Consensus 1155 ~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC-~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELT 1233 (1262)
T KOG1141|consen 1155 EKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSC-DPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELT 1233 (1262)
T ss_pred hhccCccCcccccchhhccCCCceEEEecccccchhhhhccCC-CccceeeeeeeeccccCCchhhhhhhhhhccCceee
Confidence 0001112469999999999999999999 599999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCeeeeeCCCCCcccc
Q 044651 302 WDYGIDFSDETHPIKAFDCKCGSFFCSMKS 331 (333)
Q Consensus 302 ~dYg~~~~~~~~~~~~~~C~Cgs~~Crg~~ 331 (333)
|||++.... .+.+...|+||+.+|||++
T Consensus 1234 WDY~Ye~g~--v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1234 WDYQYEQGQ--VATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred eeccccccc--cccceEEEecChhhhhccc
Confidence 999986543 3457889999999999987
No 16
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.49 E-value=1.2e-07 Score=92.30 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=80.7
Q ss_pred CccceEEEEcC-CCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCCCcceeEEeccccccccccccCcceEe
Q 044651 170 ITVKLQVFQAS-EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCL 248 (333)
Q Consensus 170 ~~~~l~v~~t~-~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~I 248 (333)
+...|.|+.++ ...|.||++...|++|+--+.|.|+++.. +..+ .....|++.+-.. +..-++|
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~-~~~~------~~n~~y~W~I~~~--------d~~~~~i 90 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIAS-IDSK------SANNRYMWEIFSS--------DNGYEYI 90 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccc-cccc------cccCcceEEEEeC--------CCceEEe
Confidence 44556665544 35789999999999999999999998211 1111 1223444443221 1234789
Q ss_pred eccc--cCCcceeeccccC--CCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCC
Q 044651 249 DATK--FGNVARFINHRCY--DANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFS 309 (333)
Q Consensus 249 Da~~--~GN~aRFiNHSC~--~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~ 309 (333)
|++. ..||.||+|=++. .-|+... ..+ -.|.+.|+|+|++||||.+.|+.++.
T Consensus 91 Dg~d~~~sNWmRYV~~Ar~~eeQNL~A~---Q~~-----~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 91 DGTDEEHSNWMRYVNSARSEEEQNLLAF---QIG-----ENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred ccCChhhcceeeeecccCChhhhhHHHH---hcc-----CceEEEecccCCCCCeEEEEeccchH
Confidence 9887 7899999998875 2465432 111 16899999999999999999998774
No 17
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=97.01 E-value=0.00021 Score=49.15 Aligned_cols=30 Identities=30% Similarity=0.624 Sum_probs=27.3
Q ss_pred CccccceeeccCccCCCCCCCCCcccccCC
Q 044651 141 GHLMRKFIKECWAKCGCSLNCGNRVVQRGI 170 (333)
Q Consensus 141 ~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~ 170 (333)
+||+|.+.+||+..|+|+..|+|+.+|+..
T Consensus 21 dClNR~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 21 DCLNRMLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred HHHHHHHhhhcCCCCCCCcCccCcccccCc
Confidence 578999999999899999999999999764
No 18
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.50 E-value=0.0013 Score=38.65 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.7
Q ss_pred CeeeeeCCCCCcccc
Q 044651 317 AFDCKCGSFFCSMKS 331 (333)
Q Consensus 317 ~~~C~Cgs~~Crg~~ 331 (333)
.+.|+|||++|||.+
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 478999999999987
No 19
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=90.23 E-value=0.44 Score=47.23 Aligned_cols=57 Identities=25% Similarity=0.542 Sum_probs=38.8
Q ss_pred eeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCC-eEEEecCCCCCCCC------CCCCCeeeeeCC
Q 044651 259 FINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNE-ELNWDYGIDFSDET------HPIKAFDCKCGS 324 (333)
Q Consensus 259 FiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GE-ELt~dYg~~~~~~~------~~~~~~~C~Cgs 324 (333)
++||||. ||+. +..+.. ...+.+...+.+++ ||++.|-...+... ...+.|.|.|..
T Consensus 208 ~~~hsC~-pn~~---~~~~~~-----~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~r 271 (482)
T KOG2084|consen 208 LFNHSCF-PNIS---VIFDGR-----GLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPR 271 (482)
T ss_pred hcccCCC-CCeE---EEECCc-----eeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCC
Confidence 7799996 9997 223321 56777888888887 99999998776542 112236666654
No 20
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=83.53 E-value=0.89 Score=45.81 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=30.9
Q ss_pred eeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCC
Q 044651 259 FINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGI 306 (333)
Q Consensus 259 FiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~ 306 (333)
+.||++. + ........++ .+.+++.++|.+|||++++||.
T Consensus 239 ~~NH~~~-~----~~~~~~~~d~---~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPE-V----IKAGYNQEDE---AVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCch-h----ccccccCCCC---cEEEEEeeeecCCCeEEEecCC
Confidence 6799995 5 2233344443 8899999999999999999995
No 21
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=68.61 E-value=3.2 Score=29.04 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=11.7
Q ss_pred EEEecCCCCCCCeEEE
Q 044651 287 AFFTTRKVEVNEELNW 302 (333)
Q Consensus 287 ~~fA~rdI~~GEELt~ 302 (333)
.++|.|||++|+.|+-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 4789999999999953
No 22
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=41.62 E-value=17 Score=25.17 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=13.9
Q ss_pred EEEecCCCCCCCeEEE
Q 044651 287 AFFTTRKVEVNEELNW 302 (333)
Q Consensus 287 ~~fA~rdI~~GEELt~ 302 (333)
.++|.++|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4678999999999885
No 23
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=37.31 E-value=30 Score=26.41 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=15.8
Q ss_pred EEEEEecCCCCCCCeEEEecC
Q 044651 285 HVAFFTTRKVEVNEELNWDYG 305 (333)
Q Consensus 285 ~i~~fA~rdI~~GEELt~dYg 305 (333)
-.++||+++|++||- .+.|.
T Consensus 11 G~gl~a~~~i~~g~~-i~~~~ 30 (116)
T smart00317 11 GWGVRATEDIPKGEF-IGEYV 30 (116)
T ss_pred cEEEEECCccCCCCE-EEEEE
Confidence 578999999999994 44443
No 24
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=28.45 E-value=18 Score=36.49 Aligned_cols=130 Identities=13% Similarity=-0.025 Sum_probs=73.0
Q ss_pred Cccee---EEeCccccCCcEEEEEeceeccHH--HHHHHHhhhcCCCc-ceeEEeccccccccccccCcceEeeccccCC
Q 044651 182 GKGWG---VRTLEALEKGTFVCEYVGEVVTNQ--ELDERNEEFSGDRH-TYPVLLDADWASERFLKDEEALCLDATKFGN 255 (333)
Q Consensus 182 ~kG~G---v~A~~~I~~G~~I~eY~Gevi~~~--e~~~r~~~~~~~~~-~y~~~l~~~~~~~~~~~~~~~~~IDa~~~GN 255 (333)
..+|+ .+|.+.+..|++|..++|+..-.. ....+.... .... .-.|.....|. ....++...|+
T Consensus 122 ~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~-~~~~~~~~f~~~~~~~---------~~~~~~~~~g~ 191 (463)
T KOG1081|consen 122 KCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPK-GMKHDHVNFFGCYAWT---------HEKRVFPYEGQ 191 (463)
T ss_pred ccccCCcceeeeccccceeEEeEEcCcccccccceecCcccch-hhccccceeccchhhH---------HHhhhhhccch
Confidence 36666 888889999999999999985443 111111100 0011 01111111221 12344444999
Q ss_pred cceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCe------EEEecCCCCCCCCCCCCCeeeeeCCCCCcc
Q 044651 256 VARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEE------LNWDYGIDFSDETHPIKAFDCKCGSFFCSM 329 (333)
Q Consensus 256 ~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEE------Lt~dYg~~~~~~~~~~~~~~C~Cgs~~Crg 329 (333)
..++++|++. ++-....+... ..+++..++.+.++-+.- ++-+|....+ .....+.+.+.+|..
T Consensus 192 ~~~~l~~~~~-~~s~~~~~~~~----~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 261 (463)
T KOG1081|consen 192 SSKLIPHSKK-PASTMSEKIKE----AKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCP-----IGDQQIYSAAVSCIK 261 (463)
T ss_pred HHHhhhhccc-cchhhhhhhhc----ccchhhhcccchhhccchhhcccccccccccccC-----cCcccccchhhhhhh
Confidence 9999999996 77655544443 345777788887777765 4444432222 223446666666654
Q ss_pred cc
Q 044651 330 KS 331 (333)
Q Consensus 330 ~~ 331 (333)
.+
T Consensus 262 k~ 263 (463)
T KOG1081|consen 262 KL 263 (463)
T ss_pred hc
Confidence 43
No 25
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.35 E-value=33 Score=34.21 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=40.3
Q ss_pred ceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCC
Q 044651 245 ALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDF 308 (333)
Q Consensus 245 ~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~ 308 (333)
.|++| .++.-+.||-+ ||..+.+...-.+ ....-.++-+|+...|||+|-|+-...
T Consensus 198 WYvMD-----efGsrvrHsde-Pnf~~aPf~fmPq--~vaYsimwp~k~~~tgeE~trDfasg~ 253 (631)
T KOG2155|consen 198 WYVMD-----EFGSRVRHSDE-PNFRIAPFMFMPQ--NVAYSIMWPTKPVNTGEEITRDFASGV 253 (631)
T ss_pred eEEHh-----hhhhhhccCCC-Ccceeeeheecch--hcceeEEeeccCCCCchHHHHHHhhcC
Confidence 35665 23445789996 9999888765432 233557889999999999999986543
No 26
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.04 E-value=44 Score=32.11 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=17.5
Q ss_pred EEEEEecCCCCCCCeEEEec
Q 044651 285 HVAFFTTRKVEVNEELNWDY 304 (333)
Q Consensus 285 ~i~~fA~rdI~~GEELt~dY 304 (333)
+-.++|.+||++||.||.+-
T Consensus 277 rrsl~a~~di~~G~~lt~~~ 296 (329)
T TIGR03569 277 RKSLVAAKDIKKGEIFTEDN 296 (329)
T ss_pred ceEEEEccCcCCCCEecHHh
Confidence 56799999999999999864
Done!