Query 044652
Match_columns 553
No_of_seqs 284 out of 933
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 1.6E-12 3.4E-17 100.4 4.6 53 357-410 5-60 (60)
2 smart00353 HLH helix loop heli 99.3 9.1E-12 2E-16 94.8 5.9 49 361-410 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 1.5E-11 3.1E-16 95.2 5.1 48 359-406 4-55 (55)
4 KOG1318 Helix loop helix trans 99.2 8E-12 1.7E-16 131.9 4.0 81 351-431 228-317 (411)
5 KOG1319 bHLHZip transcription 98.8 6.2E-09 1.3E-13 101.1 5.0 64 359-423 65-135 (229)
6 KOG4304 Transcriptional repres 98.6 1.2E-08 2.7E-13 102.2 2.5 50 359-409 35-92 (250)
7 KOG3910 Helix loop helix trans 98.5 2.8E-06 6.1E-11 92.1 17.3 55 359-413 529-586 (632)
8 KOG3561 Aryl-hydrocarbon recep 98.2 1.7E-06 3.6E-11 98.5 5.1 52 357-408 21-75 (803)
9 KOG2483 Upstream transcription 97.9 3.3E-05 7.2E-10 77.3 7.4 60 356-415 59-120 (232)
10 KOG2588 Predicted DNA-binding 97.9 1.4E-05 3.1E-10 91.8 5.3 64 354-417 274-337 (953)
11 KOG3960 Myogenic helix-loop-he 97.3 0.00043 9.4E-09 70.4 6.5 56 361-416 123-179 (284)
12 PLN03217 transcription factor 97.2 0.00068 1.5E-08 59.4 5.8 55 365-420 16-76 (93)
13 KOG0561 bHLH transcription fac 97.2 0.00027 5.9E-09 73.4 3.6 48 360-408 64-113 (373)
14 KOG4029 Transcription factor H 96.8 0.0012 2.6E-08 64.9 3.9 57 360-416 113-172 (228)
15 KOG4447 Transcription factor T 89.5 0.19 4.1E-06 48.6 1.7 48 359-407 81-130 (173)
16 KOG3560 Aryl-hydrocarbon recep 87.0 0.52 1.1E-05 53.1 3.3 40 364-404 33-76 (712)
17 KOG3898 Transcription factor N 86.1 1.1 2.4E-05 45.6 5.0 46 361-407 77-125 (254)
18 KOG3558 Hypoxia-inducible fact 83.2 0.67 1.5E-05 53.3 2.1 42 362-404 52-97 (768)
19 KOG4395 Transcription factor A 82.8 2.4 5.3E-05 44.0 5.6 74 360-434 178-254 (285)
20 KOG3559 Transcriptional regula 71.3 4 8.6E-05 45.1 3.6 45 362-407 7-55 (598)
21 PF13334 DUF4094: Domain of un 35.8 61 0.0013 28.9 4.4 27 394-420 67-93 (95)
22 PF14689 SPOB_a: Sensor_kinase 34.5 82 0.0018 25.6 4.6 42 365-414 17-58 (62)
23 KOG4447 Transcription factor T 33.3 35 0.00077 33.5 2.7 44 363-407 29-74 (173)
24 KOG3540 Beta amyloid precursor 32.1 1.5E+02 0.0033 33.9 7.5 54 362-416 257-312 (615)
25 KOG3582 Mlx interactors and re 30.8 16 0.00035 42.8 -0.1 59 356-414 651-713 (856)
26 KOG3582 Mlx interactors and re 29.6 19 0.0004 42.3 0.1 55 359-416 790-848 (856)
27 COG3074 Uncharacterized protei 23.2 1.1E+02 0.0023 26.8 3.5 25 395-419 13-37 (79)
28 PRK15422 septal ring assembly 20.0 97 0.0021 27.4 2.7 28 395-422 13-40 (79)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.32 E-value=1.6e-12 Score=100.36 Aligned_cols=53 Identities=36% Similarity=0.632 Sum_probs=48.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 044652 357 TDSHSLAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQRQVE 410 (553)
Q Consensus 357 t~sHslaERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~QVq 410 (553)
+..|+..||+||++||+.|..|+.+||.+ .| .+|+.||+.||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 34699999999999999999999999998 55 4999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.26 E-value=9.1e-12 Score=94.76 Aligned_cols=49 Identities=39% Similarity=0.582 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHH
Q 044652 361 SLAERVRREKISERMKLLQDLVPG---CNKVTGKALMLDEIINYVQSLQRQVE 410 (553)
Q Consensus 361 slaERrRReKINerfkaLr~LVPg---~sK~tdKAsILdeAIdYIK~LQ~QVq 410 (553)
++.||+||++||++|..|+.|||. ..|+ +|++||++||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999995 4464 999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.21 E-value=1.5e-11 Score=95.19 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHH
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 406 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~----sK~tdKAsILdeAIdYIK~LQ 406 (553)
.|+..||+||++||+.|..|+.+||.+ ....+|++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 599999999999999999999999987 233599999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.20 E-value=8e-12 Score=131.95 Aligned_cols=81 Identities=35% Similarity=0.571 Sum_probs=61.4
Q ss_pred cccCCCCCccchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHH---H---HHHHhhhccc
Q 044652 351 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNK---VTGKALMLDEIINYVQSLQRQVE---F---LSMKLASVNT 421 (553)
Q Consensus 351 aRRg~at~sHslaERrRReKINerfkaLr~LVPg~sK---~tdKAsILdeAIdYIK~LQ~QVq---~---Le~kl~~vn~ 421 (553)
.|.+++++.|+++|||||++||++|++|..|||.|+. .++|..||..+++||+.||+..+ + ++++|.+.+.
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~ 307 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQ 307 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHH
Confidence 3334455789999999999999999999999999942 13799999999999999997444 2 2344555566
Q ss_pred cccccccccc
Q 044652 422 RLELNVDALM 431 (553)
Q Consensus 422 ~l~~~~~~~~ 431 (553)
.|...++.|-
T Consensus 308 ~L~~rieeLk 317 (411)
T KOG1318|consen 308 ELALRIEELK 317 (411)
T ss_pred HHHHHHHHHH
Confidence 6655555553
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.77 E-value=6.2e-09 Score=101.09 Aligned_cols=64 Identities=31% Similarity=0.561 Sum_probs=58.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCCC-------CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGCN-------KVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRL 423 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~s-------K~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn~~l 423 (553)
.|.-+||+||+.|+.....|++|||.|. |. .||.||..+|+||.+|+.++.+.++++.+++...
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~Kl-skA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKL-SKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999773 43 7999999999999999999999999998887653
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.63 E-value=1.2e-08 Score=102.18 Aligned_cols=50 Identities=34% Similarity=0.529 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC--------CCCCCchhhHHHHHHHHHHHHHHH
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC--------NKVTGKALMLDEIINYVQSLQRQV 409 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~--------sK~tdKAsILdeAIdYIK~LQ~QV 409 (553)
.|-+.|||||.|||+.|.+|++||+.+ .|+ +||.||+.||+|+|.||++.
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~skl-EKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKL-EKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-HHHHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999965 454 89999999999999999744
No 7
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=98.54 E-value=2.8e-06 Score=92.09 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=47.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCC---CCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 044652 359 SHSLAERVRREKISERMKLLQDLVP---GCNKVTGKALMLDEIINYVQSLQRQVEFLS 413 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVP---g~sK~tdKAsILdeAIdYIK~LQ~QVq~Le 413 (553)
..+..||.|-..|||.||+|.+++- ...|..-|.-||..||..|-.|++||++-.
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3677899999999999999999986 345555699999999999999999998754
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.16 E-value=1.7e-06 Score=98.48 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=47.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchhhHHHHHHHHHHHHHH
Q 044652 357 TDSHSLAERVRREKISERMKLLQDLVPGCN---KVTGKALMLDEIINYVQSLQRQ 408 (553)
Q Consensus 357 t~sHslaERrRReKINerfkaLr~LVPg~s---K~tdKAsILdeAIdYIK~LQ~Q 408 (553)
+.+|+.+|||||+|+|..|.+|-+|||.|. .+.||.+||.+||++||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999999997 4459999999999999999885
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.87 E-value=3.3e-05 Score=77.31 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=48.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCCCCC--chhhHHHHHHHHHHHHHHHHHHHHH
Q 044652 356 ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTG--KALMLDEIINYVQSLQRQVEFLSMK 415 (553)
Q Consensus 356 at~sHslaERrRReKINerfkaLr~LVPg~sK~td--KAsILdeAIdYIK~LQ~QVq~Le~k 415 (553)
++..|+..||+||..|.++|..|+++||.....+. .+.||+.|+.||+.|+.+....+..
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~ 120 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD 120 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence 34579999999999999999999999996543222 5899999999999998755444433
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.86 E-value=1.4e-05 Score=91.76 Aligned_cols=64 Identities=30% Similarity=0.512 Sum_probs=54.3
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044652 354 GQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLA 417 (553)
Q Consensus 354 g~at~sHslaERrRReKINerfkaLr~LVPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~ 417 (553)
+.++.+|+++|||.|-.||+||.+|+++||+..-+..|..+|..||+||++|+..-+.|....+
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 3557899999999999999999999999998754458999999999999999986665554433
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.31 E-value=0.00043 Score=70.41 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHHHHHhhc-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 044652 361 SLAERVRREKISERMKLLQDL-VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKL 416 (553)
Q Consensus 361 slaERrRReKINerfkaLr~L-VPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl 416 (553)
.+.||||=.|+||.|.+|++- +++-+...-|+.||..||+||..||.-++++....
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 467999999999999999764 46666655899999999999999999888877544
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.22 E-value=0.00068 Score=59.35 Aligned_cols=55 Identities=33% Similarity=0.561 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044652 365 RVRREKISERMKLLQDLVPGC------NKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVN 420 (553)
Q Consensus 365 RrRReKINerfkaLr~LVPg~------sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn 420 (553)
|---+.|+|-+..||.|+|.. .|+ .-+-+|+||-.||+.|+++|..|+++|..+-
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333478999999999999954 343 5677899999999999999999999987653
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.19 E-value=0.00027 Score=73.43 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCC--CCCCCCchhhHHHHHHHHHHHHHH
Q 044652 360 HSLAERVRREKISERMKLLQDLVPG--CNKVTGKALMLDEIINYVQSLQRQ 408 (553)
Q Consensus 360 HslaERrRReKINerfkaLr~LVPg--~sK~tdKAsILdeAIdYIK~LQ~Q 408 (553)
-+..||||=.-||-.|..||.|+|. ..|+ .||.||+.+.+||.+|+.+
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~ 113 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGH 113 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhc
Confidence 4556999999999999999999995 5676 9999999999999999863
No 14
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.77 E-value=0.0012 Score=64.89 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 044652 360 HSLAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQRQVEFLSMKL 416 (553)
Q Consensus 360 HslaERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl 416 (553)
++..||.|=+-+|..|..||.+||.. +|+..|..+|..||.||++|+.-++.-+..+
T Consensus 113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 56669999999999999999999942 4445999999999999999998877665444
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=89.51 E-value=0.19 Score=48.56 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHH
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~ 407 (553)
.|++-||+|-..+|+.|.+||.++|.. .|+ .|.--|.-|-.||-+|=+
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence 489999999999999999999999964 665 777888888888887743
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=86.97 E-value=0.52 Score=53.09 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCCCCchhhHHHHHHHHHH
Q 044652 364 ERVRREKISERMKLLQDLVPG----CNKVTGKALMLDEIINYVQS 404 (553)
Q Consensus 364 ERrRReKINerfkaLr~LVPg----~sK~tdKAsILdeAIdYIK~ 404 (553)
-+|-|+|+|-.|..|..|+|- .+|+ ||.+||.-+|-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 578899999999999999993 5887 999999999999864
No 17
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=86.13 E-value=1.1 Score=45.64 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHH
Q 044652 361 SLAERVRREKISERMKLLQDLVPG---CNKVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 361 slaERrRReKINerfkaLr~LVPg---~sK~tdKAsILdeAIdYIK~LQ~ 407 (553)
+.-||+|=..+|+.|+.||.+||. ..|+ .|+..|.-+=+||..|++
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 456999999999999999999994 3565 788899888888887764
No 18
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=83.22 E-value=0.67 Score=53.35 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHH
Q 044652 362 LAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQS 404 (553)
Q Consensus 362 laERrRReKINerfkaLr~LVPg~----sK~tdKAsILdeAIdYIK~ 404 (553)
-|.|-||-|=|+-|.+|..+||-- ..+ |||+|+.-||-|+|.
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshL-DkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHL-DKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhh-hhHHHHHHHHHHHHH
Confidence 468999999999999999999933 444 999999999999974
No 19
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=82.81 E-value=2.4 Score=44.03 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 044652 360 HSLAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKD 434 (553)
Q Consensus 360 HslaERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn~~l~~~~~~~~~~d 434 (553)
-+..||+|=..+|..|..||..||.. .|+ .|-..|+.+-.||--|-..+..=...+..-...+.++.+....++
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~L-SkyetLqmaq~yi~~l~~~l~~~~~~~~~~~~~~sl~~~~~~~~~ 254 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKL-SKYETLQMAQGYILALGCLLDLPMSGLEKSDVELSLRLLDQSSKD 254 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchh-hhhhHHHHHHHHHhhhHHhhcCccccCCcCCccceeecccccccc
Confidence 35679999999999999999999965 344 688889999999988876654333333333333333333333333
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=71.35 E-value=4 Score=45.12 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 044652 362 LAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 362 laERrRReKINerfkaLr~LVPg~----sK~tdKAsILdeAIdYIK~LQ~ 407 (553)
-+.|.||+|=|-.|.+|..|+|-. ..+ ||++|+.-|--|||.-.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQl-DKasiiRLtTsYlKmr~v 55 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQL-DKASIIRLTTSYLKMRNV 55 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhcc-chhhhhhHHHHHHHHHHh
Confidence 357999999999999999999954 344 999999999999997543
No 21
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=35.85 E-value=61 Score=28.94 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044652 394 MLDEIINYVQSLQRQVEFLSMKLASVN 420 (553)
Q Consensus 394 ILdeAIdYIK~LQ~QVq~Le~kl~~vn 420 (553)
=+.++-+-|+.|.+.|..|||+|++..
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357777889999999999999998753
No 22
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.49 E-value=82 Score=25.61 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 044652 365 RVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSM 414 (553)
Q Consensus 365 RrRReKINerfkaLr~LVPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~ 414 (553)
|+-|-.+...+..+..|+=-. +. ++|.+||+.+-.+++.++.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg-~~-------~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLG-KY-------EEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--H-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CH-------HHHHHHHHHHHHHHHHHHH
Confidence 777888889999998887533 33 8999999999999988854
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=33.31 E-value=35 Score=33.51 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC--CCCCchhhHHHHHHHHHHHHH
Q 044652 363 AERVRREKISERMKLLQDLVPGCN--KVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 363 aERrRReKINerfkaLr~LVPg~s--K~tdKAsILdeAIdYIK~LQ~ 407 (553)
.||.|..++++++..|+.|+|+.. ++ .+.--|.-+-+||++|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk-~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGK-RGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCccc-ccccccccCCCchhhHHH
Confidence 388899999999999999999863 22 122225566667666643
No 24
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=32.09 E-value=1.5e+02 Score=33.92 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 044652 362 LAERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQRQVEFLSMKL 416 (553)
Q Consensus 362 laERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl 416 (553)
-.|-|+|+||++-|++-..+==.. .| .+|..+.+.--.-|+.|++++.-...+|
T Consensus 257 rleekhr~rmd~VmkEW~~ae~qaKnPK-AekqalnqhFQ~~v~sLEee~a~erqql 312 (615)
T KOG3540|consen 257 RLEEKHRKRMDKVMKEWEEAETQAKNPK-AEKQALNQHFQKTVSSLEEEAARERQQL 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788889999998765543221 33 3666666666667777777665555444
No 25
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=30.77 E-value=16 Score=42.81 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=46.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCCC----CCchhhHHHHHHHHHHHHHHHHHHHH
Q 044652 356 ATDSHSLAERVRREKISERMKLLQDLVPGCNKV----TGKALMLDEIINYVQSLQRQVEFLSM 414 (553)
Q Consensus 356 at~sHslaERrRReKINerfkaLr~LVPg~sK~----tdKAsILdeAIdYIK~LQ~QVq~Le~ 414 (553)
+...|+-+|.+||+.|.-.+..|-.++-...++ +.++.-+..++.||..++.+...+.+
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~ 713 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQE 713 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccch
Confidence 345799999999999999999999999866443 24666689999999998875554443
No 26
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=29.60 E-value=19 Score=42.31 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQRQVEFLSMKL 416 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~----sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl 416 (553)
.|.-++||||-.+-+++..|-.|.|.. .+++.+++||. +.|+.+|+.-+.+.++.
T Consensus 790 ~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 790 GSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred chHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 678899999999999999999999954 45568999998 88999988877777654
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.17 E-value=1.1e+02 Score=26.82 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 044652 395 LDEIINYVQSLQRQVEFLSMKLASV 419 (553)
Q Consensus 395 LdeAIdYIK~LQ~QVq~Le~kl~~v 419 (553)
++.||+.|.-||..|++|.++...+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 5789999999999999999887544
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.03 E-value=97 Score=27.36 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044652 395 LDEIINYVQSLQRQVEFLSMKLASVNTR 422 (553)
Q Consensus 395 LdeAIdYIK~LQ~QVq~Le~kl~~vn~~ 422 (553)
++.||+-|.-||.+|++|.++...+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999887665543
Done!