Query 044652
Match_columns 553
No_of_seqs 284 out of 933
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 09:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.6 2.6E-16 9E-21 139.6 7.3 89 342-430 13-110 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 1.6E-16 5.4E-21 132.7 3.5 67 357-423 7-73 (82)
3 4h10_B Circadian locomoter out 99.5 7.1E-15 2.4E-19 121.0 3.6 57 357-413 9-65 (71)
4 1an4_A Protein (upstream stimu 99.5 7E-15 2.4E-19 117.1 3.4 56 354-409 3-63 (65)
5 1a0a_A BHLH, protein (phosphat 99.5 3.7E-15 1.3E-19 119.5 1.7 54 357-410 3-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.5 7.3E-15 2.5E-19 121.2 0.6 52 355-407 8-63 (73)
7 1hlo_A Protein (transcription 99.4 1.2E-13 4.3E-18 114.2 5.9 61 358-419 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.7E-13 5.7E-18 113.8 6.1 63 358-421 4-68 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 6.7E-13 2.3E-17 112.4 6.3 60 358-418 8-70 (88)
10 3u5v_A Protein MAX, transcript 99.3 8.2E-13 2.8E-17 109.7 4.0 57 358-414 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 2.7E-11 9.4E-16 101.1 7.4 61 359-420 4-67 (80)
12 4f3l_A Mclock, circadian locom 98.9 6.3E-10 2.2E-14 111.3 5.7 54 354-408 10-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.7E-09 5.8E-14 88.2 4.6 51 359-410 15-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 3.4E-09 1.1E-13 84.4 5.3 52 359-410 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.1E-09 3.9E-14 111.0 3.1 53 354-407 11-67 (387)
16 4ath_A MITF, microphthalmia-as 98.5 9.2E-08 3.1E-12 81.1 4.5 63 368-430 4-75 (83)
17 2lfh_A DNA-binding protein inh 98.3 1.7E-07 5.8E-12 77.0 2.4 45 362-407 20-67 (68)
18 4aya_A DNA-binding protein inh 97.7 3.9E-05 1.3E-09 66.8 6.1 48 364-411 33-82 (97)
19 2wt7_A Proto-oncogene protein 48.9 9.4 0.00032 30.1 2.4 44 364-421 1-44 (63)
20 1zme_C Proline utilization tra 41.4 13 0.00046 28.3 2.2 23 400-422 44-66 (70)
21 2er8_A Regulatory protein Leu3 36.9 23 0.0008 27.3 3.0 22 399-420 48-69 (72)
22 3coq_A Regulatory protein GAL4 35.0 24 0.00081 28.0 2.8 27 399-425 44-70 (89)
23 2wuj_A Septum site-determining 33.9 41 0.0014 26.1 3.9 30 393-422 27-56 (57)
24 1pyi_A Protein (pyrimidine pat 29.9 48 0.0016 26.8 3.8 23 399-421 47-69 (96)
25 1hwt_C Protein (heme activator 28.0 27 0.00092 27.4 2.0 22 399-420 57-78 (81)
26 2oqq_A Transcription factor HY 27.1 29 0.00099 26.2 1.8 23 401-423 4-26 (42)
27 1p3q_Q VPS9P, vacuolar protein 24.6 80 0.0027 24.8 4.0 26 362-387 3-28 (54)
28 2jee_A YIIU; FTSZ, septum, coi 23.7 60 0.0021 27.4 3.4 27 395-421 15-41 (81)
29 3muj_A Transcription factor CO 22.4 87 0.003 28.9 4.4 35 370-405 95-133 (138)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.63 E-value=2.6e-16 Score=139.55 Aligned_cols=89 Identities=33% Similarity=0.458 Sum_probs=50.9
Q ss_pred CCccchhhccccCCCCCccchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHH---
Q 044652 342 PPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNK---VTGKALMLDEIINYVQSLQRQVEFLSMK--- 415 (553)
Q Consensus 342 pp~d~i~~RaRRg~at~sHslaERrRReKINerfkaLr~LVPg~sK---~tdKAsILdeAIdYIK~LQ~QVq~Le~k--- 415 (553)
++.+..+.+.|+++++..|+++||+||++||++|.+|++|||.|.+ ..+|++||++||+||++||.+++.|+..
T Consensus 13 ~t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 13 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888888999999999999999999999999999999853 2489999999999999999999999864
Q ss_pred ---hhhcccccccccccc
Q 044652 416 ---LASVNTRLELNVDAL 430 (553)
Q Consensus 416 ---l~~vn~~l~~~~~~~ 430 (553)
+...|..|-..|..|
T Consensus 93 ~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=1.6e-16 Score=132.67 Aligned_cols=67 Identities=27% Similarity=0.386 Sum_probs=59.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 044652 357 TDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRL 423 (553)
Q Consensus 357 t~sHslaERrRReKINerfkaLr~LVPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn~~l 423 (553)
+..|+++||+||++||++|.+|++|||+++..++|++||++||+||++||.+++.|+.++..+...+
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999844459999999999999999999999999887765543
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=7.1e-15 Score=121.02 Aligned_cols=57 Identities=21% Similarity=0.403 Sum_probs=51.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 044652 357 TDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLS 413 (553)
Q Consensus 357 t~sHslaERrRReKINerfkaLr~LVPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le 413 (553)
+.+|+++||+||++||++|.+|+.|||++....+|++||++||+||+.||.++..|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 357999999999999999999999999865334999999999999999999998775
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=7e-15 Score=117.06 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=49.6
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHH
Q 044652 354 GQATDSHSLAERVRREKISERMKLLQDLVPGCNK-----VTGKALMLDEIINYVQSLQRQV 409 (553)
Q Consensus 354 g~at~sHslaERrRReKINerfkaLr~LVPg~sK-----~tdKAsILdeAIdYIK~LQ~QV 409 (553)
...+..|+++||+||++||+.|.+|+.|||.+.. ..+|++||++||+||+.||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999862 2499999999999999999865
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.49 E-value=3.7e-15 Score=119.48 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=47.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 044652 357 TDSHSLAERVRREKISERMKLLQDLVPGCNK------VTGKALMLDEIINYVQSLQRQVE 410 (553)
Q Consensus 357 t~sHslaERrRReKINerfkaLr~LVPg~sK------~tdKAsILdeAIdYIK~LQ~QVq 410 (553)
+.+|.++||+||++||+.|.+|+.|||.+.+ ...||+||++||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999997632 23799999999999999998764
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=7.3e-15 Score=121.18 Aligned_cols=52 Identities=31% Similarity=0.524 Sum_probs=47.2
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 044652 355 QATDSHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 355 ~at~sHslaERrRReKINerfkaLr~LVPg~----sK~tdKAsILdeAIdYIK~LQ~ 407 (553)
+++..|+++||+||++||++|.+|+.|||.| .|+ |||+||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999999987 575 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.2e-13 Score=114.16 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=56.5
Q ss_pred CccchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044652 358 DSHSLAERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQRQVEFLSMKLASV 419 (553)
Q Consensus 358 ~sHslaERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~v 419 (553)
..|+.+||+||.+||+.|..|+.|||.+ .|+ +|+.||..||+||+.|+++++.|+.++..+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999987 465 999999999999999999999999988765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.7e-13 Score=113.83 Aligned_cols=63 Identities=27% Similarity=0.474 Sum_probs=56.5
Q ss_pred CccchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044652 358 DSHSLAERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNT 421 (553)
Q Consensus 358 ~sHslaERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn~ 421 (553)
..|+.+||+||++||+.|..|+++||.+ .|+ +|++||..||+||+.|+.+++.|+.++..+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999985 675 99999999999999999999999887766543
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=6.7e-13 Score=112.41 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=53.3
Q ss_pred CccchHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 044652 358 DSHSLAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQRQVEFLSMKLAS 418 (553)
Q Consensus 358 ~sHslaERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~ 418 (553)
..|+.+||+||++||++|..|+++||.+ .|+ +|++||..||+||++|+.+.+.|..++..
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999976 465 99999999999999999998887765543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.31 E-value=8.2e-13 Score=109.66 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=49.1
Q ss_pred CccchHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 044652 358 DSHSLAERVRREKISERMKLLQDLVPG---CNKVTGKALMLDEIINYVQSLQRQVEFLSM 414 (553)
Q Consensus 358 ~sHslaERrRReKINerfkaLr~LVPg---~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~ 414 (553)
..|+..||+||++||++|..|+++||. ..|...|+.||..||+||++||++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999995 344336889999999999999999998753
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.19 E-value=2.7e-11 Score=101.15 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVN 420 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn 420 (553)
.|+..||+||..||+.|..|+++||.+ .|. .|+.||..||+||+.|+.+.+.|..+...+.
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999965 454 7999999999999999999988887765543
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.93 E-value=6.3e-10 Score=111.30 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=41.6
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHhhcCC-CCCCCCCchhhHHHHHHHHHHHHHH
Q 044652 354 GQATDSHSLAERVRREKISERMKLLQDLVP-GCNKVTGKALMLDEIINYVQSLQRQ 408 (553)
Q Consensus 354 g~at~sHslaERrRReKINerfkaLr~LVP-g~sK~tdKAsILdeAIdYIK~LQ~Q 408 (553)
..++.+|+++||+||+|||+.|.+|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 344567999999999999999999999999 44575 9999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.85 E-value=1.7e-09 Score=88.20 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=46.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQRQVE 410 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~QVq 410 (553)
.|+..||+|+..||+.|..||++||.. .|+ .|+.||..||+||+.|++.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999999964 454 899999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.82 E-value=3.4e-09 Score=84.41 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 044652 359 SHSLAERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQRQVE 410 (553)
Q Consensus 359 sHslaERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~QVq 410 (553)
.|+..||+|+..||+.|..||.+||.. +++..|+.||..||+||+.|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999965 3334899999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.82 E-value=1.1e-09 Score=110.99 Aligned_cols=53 Identities=28% Similarity=0.421 Sum_probs=47.5
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHhhcCC----CCCCCCCchhhHHHHHHHHHHHHH
Q 044652 354 GQATDSHSLAERVRREKISERMKLLQDLVP----GCNKVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 354 g~at~sHslaERrRReKINerfkaLr~LVP----g~sK~tdKAsILdeAIdYIK~LQ~ 407 (553)
++++++|+.+||+||+|||+.|.+|+.||| ...|+ ||++||..||+|||.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence 344568999999999999999999999999 45676 999999999999999984
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.48 E-value=9.2e-08 Score=81.14 Aligned_cols=63 Identities=33% Similarity=0.473 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHH------Hhhhcccccccccccc
Q 044652 368 REKISERMKLLQDLVPGCNK---VTGKALMLDEIINYVQSLQRQVEFLSM------KLASVNTRLELNVDAL 430 (553)
Q Consensus 368 ReKINerfkaLr~LVPg~sK---~tdKAsILdeAIdYIK~LQ~QVq~Le~------kl~~vn~~l~~~~~~~ 430 (553)
|..||++|++|..|||.++. ..+|++||..+|+||+.||++++.+.+ ++.+.|..+-+.+..|
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88999999999999998642 238999999999999999986665543 3445566655555444
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.32 E-value=1.7e-07 Score=76.96 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 044652 362 LAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQR 407 (553)
Q Consensus 362 laERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~ 407 (553)
..||+|+..||+.|..||++||.. .|+ .|..||..||+||+.||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 348999999999999999999965 454 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.74 E-value=3.9e-05 Score=66.75 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 044652 364 ERVRREKISERMKLLQDLVPGC--NKVTGKALMLDEIINYVQSLQRQVEF 411 (553)
Q Consensus 364 ERrRReKINerfkaLr~LVPg~--sK~tdKAsILdeAIdYIK~LQ~QVq~ 411 (553)
||.|=..||+.|..||.+||.. +|+..|..+|..||+||+.|++.++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788999999999999964 33348999999999999999988764
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.93 E-value=9.4 Score=30.09 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044652 364 ERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNT 421 (553)
Q Consensus 364 ERrRReKINerfkaLr~LVPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn~ 421 (553)
||++|.+...++.+.+. - ..-.+|+..|+.+|+.|+.+...+..
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888888773 2 22445666666666666655544443
No 20
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=41.35 E-value=13 Score=28.34 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc
Q 044652 400 NYVQSLQRQVEFLSMKLASVNTR 422 (553)
Q Consensus 400 dYIK~LQ~QVq~Le~kl~~vn~~ 422 (553)
.||..|+.+|+.|+..+..+...
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888877766543
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.93 E-value=23 Score=27.27 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 044652 399 INYVQSLQRQVEFLSMKLASVN 420 (553)
Q Consensus 399 IdYIK~LQ~QVq~Le~kl~~vn 420 (553)
-.||..|+.+|+.|+..|..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887653
No 22
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.03 E-value=24 Score=28.05 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccc
Q 044652 399 INYVQSLQRQVEFLSMKLASVNTRLEL 425 (553)
Q Consensus 399 IdYIK~LQ~QVq~Le~kl~~vn~~l~~ 425 (553)
..||+.|+.+|+.|+..+..+.+..++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l 70 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDL 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 469999999999999999887765443
No 23
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.86 E-value=41 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044652 393 LMLDEIINYVQSLQRQVEFLSMKLASVNTR 422 (553)
Q Consensus 393 sILdeAIdYIK~LQ~QVq~Le~kl~~vn~~ 422 (553)
..|++.++-+..|.++++.|..++..++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999877654
No 24
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.85 E-value=48 Score=26.75 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 044652 399 INYVQSLQRQVEFLSMKLASVNT 421 (553)
Q Consensus 399 IdYIK~LQ~QVq~Le~kl~~vn~ 421 (553)
..||+.|+.+|+.|+..|..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45999999999999999876644
No 25
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.01 E-value=27 Score=27.38 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 044652 399 INYVQSLQRQVEFLSMKLASVN 420 (553)
Q Consensus 399 IdYIK~LQ~QVq~Le~kl~~vn 420 (553)
-.||..|+.+|+.||..|..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998876654
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.08 E-value=29 Score=26.25 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhccccc
Q 044652 401 YVQSLQRQVEFLSMKLASVNTRL 423 (553)
Q Consensus 401 YIK~LQ~QVq~Le~kl~~vn~~l 423 (553)
|+-.|+.++++|+.+.+.++.++
T Consensus 4 Yl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877776666655
No 27
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.59 E-value=80 Score=24.80 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044652 362 LAERVRREKISERMKLLQDLVPGCNK 387 (553)
Q Consensus 362 laERrRReKINerfkaLr~LVPg~sK 387 (553)
.++|-+|...++-++.|+.+.|...+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57899999999999999999999866
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.68 E-value=60 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044652 395 LDEIINYVQSLQRQVEFLSMKLASVNT 421 (553)
Q Consensus 395 LdeAIdYIK~LQ~QVq~Le~kl~~vn~ 421 (553)
++.||+-|.-||.+|++|.++...++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999988766543
No 29
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=22.43 E-value=87 Score=28.86 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHH
Q 044652 370 KISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSL 405 (553)
Q Consensus 370 KINerfkaLr~LVPg~----sK~tdKAsILdeAIdYIK~L 405 (553)
.|.-.|..|+.+||.- .++ -|-.||..|-++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 4788999999999953 444 7999999999988876
Done!