Query 044654
Match_columns 68
No_of_seqs 86 out of 88
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.9 1.5E-28 3.2E-33 162.8 4.8 68 1-68 1-84 (118)
2 PF05617 Prolamin_like: Prolam 99.2 2.6E-12 5.6E-17 75.7 1.1 36 32-67 1-37 (70)
3 PF07172 GRP: Glycine rich pro 85.8 0.69 1.5E-05 29.4 2.1 9 1-9 1-9 (95)
4 PLN00214 putative protein; Pro 84.1 0.88 1.9E-05 30.4 2.1 60 3-66 8-69 (115)
5 cd01960 nsLTP1 nsLTP1: Non-spe 32.4 19 0.00042 21.5 0.5 30 33-67 3-33 (89)
6 PF06585 JHBP: Haemolymph juve 30.4 31 0.00068 23.6 1.3 51 1-52 1-51 (248)
7 PF12524 GlyL_C: dsDNA virus g 27.2 10 0.00022 23.1 -1.4 15 34-48 1-16 (65)
8 cd00010 AAI_LTSS AAI_LTSS: Alp 24.6 19 0.00042 19.8 -0.4 16 52-67 8-24 (63)
9 cd06369 PBP1_GC_C_enterotoxin_ 21.5 52 0.0011 25.8 1.2 31 35-65 53-93 (380)
10 PF04109 APG9: Autophagy prote 18.2 90 0.0019 24.2 1.9 28 38-65 329-359 (370)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=162.84 Aligned_cols=68 Identities=31% Similarity=0.697 Sum_probs=61.1
Q ss_pred CchHHHHHHHHHHHHH---hhccc-CC-------C----CCCcChhhhhhhccCCcchHHHHHHHHHhCccc-cCccccc
Q 044654 1 MALKHVFFILALTFLI---MANLQ-MQ-------P----PEMIASTTCWNVLMNLKSCSNEIVIFFLNSQAD-IGPDCCR 64 (68)
Q Consensus 1 Ma~k~~f~lL~v~~ii---~~~lp-~~-------p----~~~~~~~~Cwssl~~v~gC~~EI~~~~~~G~~~-igp~CC~ 64 (68)
|+||||++||+|+|++ |+|+| ++ | ++.+|++||||||+++|||+.||++|+++||++ ||++|||
T Consensus 1 m~iknV~~ll~v~cIvvsVna~lpqf~~~fp~~~p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCK 80 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNAQLPQFPAQLPFLFPFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCK 80 (118)
T ss_pred CchHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHH
Confidence 9999999999999999 88875 42 1 334699999999999999999999999999998 9999999
Q ss_pred cccC
Q 044654 65 VIDH 68 (68)
Q Consensus 65 Ai~~ 68 (68)
||++
T Consensus 81 Af~~ 84 (118)
T PLN00213 81 AFLD 84 (118)
T ss_pred HHHh
Confidence 9974
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.23 E-value=2.6e-12 Score=75.73 Aligned_cols=36 Identities=33% Similarity=0.835 Sum_probs=33.7
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccc-cCcccccccc
Q 044654 32 TCWNVLMNLKSCSNEIVIFFLNSQAD-IGPDCCRVID 67 (68)
Q Consensus 32 ~Cwssl~~v~gC~~EI~~~~~~G~~~-igp~CC~Ai~ 67 (68)
|||+++.++++|+.||+.+|++|+.. ||++||+||+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~ 37 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAIN 37 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHH
Confidence 69999999999999999999999955 9999999986
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=85.81 E-value=0.69 Score=29.40 Aligned_cols=9 Identities=33% Similarity=0.515 Sum_probs=6.2
Q ss_pred CchHHHHHH
Q 044654 1 MALKHVFFI 9 (68)
Q Consensus 1 Ma~k~~f~l 9 (68)
||+|+.+||
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 998885443
No 4
>PLN00214 putative protein; Provisional
Probab=84.15 E-value=0.88 Score=30.43 Aligned_cols=60 Identities=18% Similarity=0.447 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCC-CcChhhhhhhccCCcchHHHHHHHHH-hCccccCccccccc
Q 044654 3 LKHVFFILALTFLIMANLQMQPPE-MIASTTCWNVLMNLKSCSNEIVIFFL-NSQADIGPDCCRVI 66 (68)
Q Consensus 3 ~k~~f~lL~v~~ii~~~lp~~p~~-~~~~~~Cwssl~~v~gC~~EI~~~~~-~G~~~igp~CC~Ai 66 (68)
+..+|..++++|++-.-+...... ..-...|---+. +-|..||+..++ ||. ...+||+-+
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~L 69 (115)
T PLN00214 8 ITTLFIVVALVCAFVPVFSVEEAEAKSLWNTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDL 69 (115)
T ss_pred hhHHHHHHHHHHhcccccchhhhHHHHHHHHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHH
Confidence 346777788888763222221111 111244544333 669999999999 565 578888754
No 5
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=32.36 E-value=19 Score=21.46 Aligned_cols=30 Identities=27% Similarity=0.630 Sum_probs=19.2
Q ss_pred hhhhccCCcchHHHHHHHHHhCccc-cCcccccccc
Q 044654 33 CWNVLMNLKSCSNEIVIFFLNSQAD-IGPDCCRVID 67 (68)
Q Consensus 33 Cwssl~~v~gC~~EI~~~~~~G~~~-igp~CC~Ai~ 67 (68)
|=..+..+..|.. |++|... -+++||.+++
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~ 33 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVK 33 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhH
Confidence 4455556666654 3445444 8889999876
No 6
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=30.45 E-value=31 Score=23.60 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCcChhhhhhhccCCcchHHHHHHHHH
Q 044654 1 MALKHVFFILALTFLIMANLQMQPPEMIASTTCWNVLMNLKSCSNEIVIFFL 52 (68)
Q Consensus 1 Ma~k~~f~lL~v~~ii~~~lp~~p~~~~~~~~Cwssl~~v~gC~~EI~~~~~ 52 (68)
|.....++++.+++++....... ..+....+|..+--+...|..|..+.+.
T Consensus 1 M~~~~~~~~l~~~~~~~~~~~~~-~~p~~~~~C~~~~~~~~~cl~~~~~~~~ 51 (248)
T PF06585_consen 1 MKLLVLFFLLVLVFSVASSAALQ-ELPSYIKPCKRSDPNLNECLRESIENFR 51 (248)
T ss_dssp ----------------------S---S-S---BBTT----HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcccc-cCCcccCcCCCCCccHHHHHHHHHHHHH
Confidence 55444454444444442221111 1345567788887778889888887754
No 7
>PF12524 GlyL_C: dsDNA virus glycoprotein L C terminal ; InterPro: IPR022200 Herpesviruses are enveloped by a lipid bilayer that contains at least a dozen glycoproteins. The virion surface glycoproteins mediate recognition of susceptible cells and promote fusion of the viral envelope with the cell membrane, leading to virus entry. No single glycoprotein associated with the virion membrane has been identified as the fusogen []. Glycoprotein L (gL) forms a non-covalently linked heterodimer with glycoprotein H (gH). This heterodimer is essential for virus-cell and cell-cell fusion since the association of gH and gL is necessary for correct localisation of gH to the virion or cell surface. gH anchoring the heterodimer to the plasma membrane through its transmembrane domain. gL lacks a transmembrane domain and is secreted from cells when expressed in the absence of gH []. This entry represents Herpesvirus glycoprotein L (gL), which is a virion associated envelope glycoprotein []. Heterodimer formation between gH and gL has been demonstrated in both virions and infected cells []. Heterodimer formation between gL and gH is important for the proper folding of gH and its insertion into the membrane because the anti-gH conformation-dependent monoclonal antibodies (mAbs) 53S and LP11 bind gH only when gL is present [, ].; PDB: 3M1C_B.
Probab=27.24 E-value=10 Score=23.05 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=4.2
Q ss_pred hhhccCC-cchHHHHH
Q 044654 34 WNVLMNL-KSCSNEIV 48 (68)
Q Consensus 34 wssl~~v-~gC~~EI~ 48 (68)
|+|...+ +||+++.+
T Consensus 1 a~s~~pv~~GCVN~~y 16 (65)
T PF12524_consen 1 ASSHTPVGPGCVNFEY 16 (65)
T ss_dssp -S------SS--SS-T
T ss_pred CccCCccCCCeecccC
Confidence 6778888 78987654
No 8
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=24.63 E-value=19 Score=19.81 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=10.2
Q ss_pred HhCccc-cCcccccccc
Q 044654 52 LNSQAD-IGPDCCRVID 67 (68)
Q Consensus 52 ~~G~~~-igp~CC~Ai~ 67 (68)
++|... -.++||.+++
T Consensus 8 ~~~~~~~Ps~~CC~~l~ 24 (63)
T cd00010 8 LTGGATAPPSDCCSGLK 24 (63)
T ss_pred HcCCCCCCChHHHHHHH
Confidence 445433 7778887765
No 9
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=21.49 E-value=52 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=23.1
Q ss_pred hhccCCcchHH------HHHHHHHh-Cccc---cCcccccc
Q 044654 35 NVLMNLKSCSN------EIVIFFLN-SQAD---IGPDCCRV 65 (68)
Q Consensus 35 ssl~~v~gC~~------EI~~~~~~-G~~~---igp~CC~A 65 (68)
+++.+-+||.. |+.+.+.. ++.+ +||.|=-|
T Consensus 53 ~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYa 93 (380)
T cd06369 53 TSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYA 93 (380)
T ss_pred cceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCcccee
Confidence 45778889998 88888775 4444 99999543
No 10
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=18.16 E-value=90 Score=24.22 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=22.8
Q ss_pred cCCcchHHHHHHHHHhCccc---cCcccccc
Q 044654 38 MNLKSCSNEIVIFFLNSQAD---IGPDCCRV 65 (68)
Q Consensus 38 ~~v~gC~~EI~~~~~~G~~~---igp~CC~A 65 (68)
..++.|..||+.||.+=..+ +|.-|=-|
T Consensus 329 f~Lp~~a~~IvdF~r~~TV~V~GvG~VCsfA 359 (370)
T PF04109_consen 329 FSLPKCADEIVDFFREFTVHVDGVGYVCSFA 359 (370)
T ss_pred hcccccHHHHHHHHHhceeecCCCCCeeeec
Confidence 57899999999999886654 88888654
Done!