Query 044654
Match_columns 68
No_of_seqs 86 out of 88
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 36.6 8.6 0.00029 22.8 0.3 14 54-67 43-57 (74)
2 1ebo_A Ebola virus envelope pr 34.6 7.8 0.00027 25.2 -0.1 12 55-66 81-93 (131)
3 3s88_J GP2, GP2, envelope glyc 12.4 61 0.0021 21.9 0.6 9 58-66 132-140 (167)
4 1v90_A Delta-paluit1, delta-pa 9.4 90 0.0031 16.4 0.5 9 58-66 13-21 (38)
5 2e2s_A Agelenin; cystine knot, 8.8 1.1E+02 0.0036 15.9 0.6 9 58-66 14-22 (36)
6 1rp3_B Anti sigma factor FLGM; 8.4 1.8E+02 0.0062 16.8 1.7 17 43-59 59-75 (88)
7 1afh_A Maize nonspecific lipid 8.1 76 0.0026 18.5 -0.1 30 33-67 4-34 (93)
8 1g8q_A CD81 antigen, extracell 7.8 2.3E+02 0.008 15.1 1.9 16 38-53 73-88 (90)
9 2dcv_A Tachystatin-B1; antimic 7.7 1.1E+02 0.0038 16.3 0.5 9 58-66 15-23 (42)
10 2job_A Antilipopolysaccharide 7.7 80 0.0027 19.8 -0.2 27 34-62 7-34 (102)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=36.55 E-value=8.6 Score=22.83 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=9.7
Q ss_pred Cccc-cCcccccccc
Q 044654 54 SQAD-IGPDCCRVID 67 (68)
Q Consensus 54 G~~~-igp~CC~Ai~ 67 (68)
|.-. +||+||-.+.
T Consensus 43 gtc~ilgpdc~i~~~ 57 (74)
T 2ebo_A 43 GTCHILGPDCAIEPH 57 (74)
T ss_dssp CHHHHHGGGGGCCCC
T ss_pred CcceecCCccccCHH
Confidence 3344 9999997553
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=34.61 E-value=7.8 Score=25.18 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=8.8
Q ss_pred ccc-cCccccccc
Q 044654 55 QAD-IGPDCCRVI 66 (68)
Q Consensus 55 ~~~-igp~CC~Ai 66 (68)
.-. +||+||-..
T Consensus 81 TC~iLGPdCcIep 93 (131)
T 1ebo_A 81 TCHILGPDCRIEP 93 (131)
T ss_dssp HHHHHGGGGGCCC
T ss_pred cceecCCccccCH
Confidence 344 999999654
No 3
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=12.37 E-value=61 Score=21.90 Aligned_cols=9 Identities=56% Similarity=1.398 Sum_probs=7.2
Q ss_pred cCccccccc
Q 044654 58 IGPDCCRVI 66 (68)
Q Consensus 58 igp~CC~Ai 66 (68)
+||+||--.
T Consensus 132 lgp~CCi~~ 140 (167)
T 3s88_J 132 LGPDCCIEP 140 (167)
T ss_dssp SCCSSCCCC
T ss_pred CCCccccch
Confidence 999999543
No 4
>1v90_A Delta-paluit1, delta-palutoxin IT1; insecticidal toxin, spider toxin, ICK fold, structure; NMR {Paracoelotes luctuosus} PDB: 1v91_A
Probab=9.38 E-value=90 Score=16.38 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=7.1
Q ss_pred cCccccccc
Q 044654 58 IGPDCCRVI 66 (68)
Q Consensus 58 igp~CC~Ai 66 (68)
-||.||+-+
T Consensus 13 ~gp~CC~gy 21 (38)
T 1v90_A 13 SGPSCCDGF 21 (38)
T ss_dssp TCSCCCTTB
T ss_pred cCCcccCCc
Confidence 788999764
No 5
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=8.77 E-value=1.1e+02 Score=15.87 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=6.7
Q ss_pred cCccccccc
Q 044654 58 IGPDCCRVI 66 (68)
Q Consensus 58 igp~CC~Ai 66 (68)
-||-||...
T Consensus 14 sGPrCCsgl 22 (36)
T 2e2s_A 14 SGPRCCSGL 22 (36)
T ss_dssp SSCCBCTTC
T ss_pred cCCcccCCC
Confidence 688898654
No 6
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=8.38 E-value=1.8e+02 Score=16.79 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCccccC
Q 044654 43 CSNEIVIFFLNSQADIG 59 (68)
Q Consensus 43 C~~EI~~~~~~G~~~ig 59 (68)
=+.||.+++-+|.+.+.
T Consensus 59 kV~~iK~aI~~GtY~vd 75 (88)
T 1rp3_B 59 KVKELKEKIEKGEYEVS 75 (88)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 36789999999987654
No 7
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=8.12 E-value=76 Score=18.47 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=16.1
Q ss_pred hhhhccCCcchHHHHHHHHHhCccc-cCcccccccc
Q 044654 33 CWNVLMNLKSCSNEIVIFFLNSQAD-IGPDCCRVID 67 (68)
Q Consensus 33 Cwssl~~v~gC~~EI~~~~~~G~~~-igp~CC~Ai~ 67 (68)
|=..+.++..|..- ++|... -.++||.+++
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~ 34 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVR 34 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHH
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHH
Confidence 33444455555443 334433 5667998765
No 8
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=7.76 E-value=2.3e+02 Score=15.14 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=12.4
Q ss_pred cCCcchHHHHHHHHHh
Q 044654 38 MNLKSCSNEIVIFFLN 53 (68)
Q Consensus 38 ~~v~gC~~EI~~~~~~ 53 (68)
...+||...|..+|-+
T Consensus 73 ~~~~GC~~~i~~~~~~ 88 (90)
T 1g8q_A 73 LFKEDCHQKIDDLFSG 88 (90)
T ss_dssp HTSCCHHHHHHHHHHT
T ss_pred CccCCcHHHHHHHHHh
Confidence 4567999999988654
No 9
>2dcv_A Tachystatin-B1; antimicrobial, cystine-knot, antimicrobial protein; NMR {Tachypleus tridentatus} PDB: 2dcw_A
Probab=7.69 E-value=1.1e+02 Score=16.30 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=6.7
Q ss_pred cCccccccc
Q 044654 58 IGPDCCRVI 66 (68)
Q Consensus 58 igp~CC~Ai 66 (68)
-||.||+-+
T Consensus 15 sgp~CC~Gy 23 (42)
T 2dcv_A 15 SGRSCCFGY 23 (42)
T ss_dssp CSSCBSTTE
T ss_pred cCCCccCCc
Confidence 588899754
No 10
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=7.67 E-value=80 Score=19.78 Aligned_cols=27 Identities=22% Similarity=0.708 Sum_probs=0.0
Q ss_pred hhhccCCcchHHHHHHHHHhCccc-cCccc
Q 044654 34 WNVLMNLKSCSNEIVIFFLNSQAD-IGPDC 62 (68)
Q Consensus 34 wssl~~v~gC~~EI~~~~~~G~~~-igp~C 62 (68)
|..| ++.=+..|....-||++. +|+.|
T Consensus 7 ~~~l--~~~i~~kl~~Lw~~g~v~~lGH~C 34 (102)
T 2job_A 7 WEAV--AAAVASKIVGLWRNEKTELLGHEC 34 (102)
T ss_dssp HHHH--HHHHHHHHHHTCCSSCEEETTEEE
T ss_pred HHHH--HHHHHHHHHhheeCCCEEEcCCeE
Done!