Query 044654
Match_columns 68
No_of_seqs 86 out of 88
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 09:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 42.5 5.2 0.00038 20.4 1.4 16 1-16 9-24 (46)
2 d1k8rb_ d.15.1.5 (B:) Protein 22.8 18 0.0013 20.9 1.5 18 36-53 13-30 (95)
3 d2bbga_ g.6.1.1 (A:) Amb V all 16.7 19 0.0014 17.7 0.6 10 58-67 14-23 (40)
4 d1fk5a_ a.52.1.1 (A:) Plant no 14.7 12 0.00085 20.8 -0.7 30 33-67 4-34 (93)
5 d3cx5d2 f.23.11.1 (D:261-307) 14.4 42 0.0031 16.9 1.6 14 1-14 9-22 (47)
6 d1mida_ a.52.1.1 (A:) Plant no 12.0 16 0.0011 20.2 -0.7 30 33-67 3-32 (91)
7 d1cmra_ g.3.7.2 (A:) Charybdot 6.8 47 0.0034 15.4 -0.0 10 30-39 4-13 (31)
8 d2csua1 c.2.1.8 (A:1-129) Acet 6.5 1E+02 0.0074 17.2 1.4 11 31-41 52-62 (129)
9 d1dsqa_ g.40.1.1 (A:) Nucleic 6.1 69 0.005 14.2 0.4 12 52-63 7-19 (26)
10 d2axtk1 f.23.36.1 (K:10-46) Ph 5.7 1.7E+02 0.013 13.8 1.8 12 3-14 19-30 (37)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=42.47 E-value=5.2 Score=20.42 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHHH
Q 044654 1 MALKHVFFILALTFLI 16 (68)
Q Consensus 1 Ma~k~~f~lL~v~~ii 16 (68)
|++|.++++..++.+.
T Consensus 9 mG~Kv~~~l~~l~~l~ 24 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLV 24 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777665555544
No 2
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=22.81 E-value=18 Score=20.94 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=13.9
Q ss_pred hccCCcchHHHHHHHHHh
Q 044654 36 VLMNLKSCSNEIVIFFLN 53 (68)
Q Consensus 36 sl~~v~gC~~EI~~~~~~ 53 (68)
-..|+.||.+||..-.+.
T Consensus 13 K~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 13 RAVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEEECCSCHHHHHHHHHH
T ss_pred EEEEeccCHHHHHHHHHH
Confidence 467999999998776543
No 3
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=16.75 E-value=19 Score=17.65 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=7.8
Q ss_pred cCcccccccc
Q 044654 58 IGPDCCRVID 67 (68)
Q Consensus 58 igp~CC~Ai~ 67 (68)
+|..||..|.
T Consensus 14 vgkyccspig 23 (40)
T d2bbga_ 14 VGKYCCSPIG 23 (40)
T ss_dssp TTSEEECSSS
T ss_pred ccceeccccc
Confidence 8889987663
No 4
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=14.66 E-value=12 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.566 Sum_probs=18.5
Q ss_pred hhhhccCCcchHHHHHHHHHhCccc-cCcccccccc
Q 044654 33 CWNVLMNLKSCSNEIVIFFLNSQAD-IGPDCCRVID 67 (68)
Q Consensus 33 Cwssl~~v~gC~~EI~~~~~~G~~~-igp~CC~Ai~ 67 (68)
|=..+.++-.|.. |++|... -+++||.+++
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~ 34 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVR 34 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHH
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHH
Confidence 4444555555543 4566655 7889998765
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.36 E-value=42 Score=16.91 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=7.5
Q ss_pred CchHHHHHHHHHHH
Q 044654 1 MALKHVFFILALTF 14 (68)
Q Consensus 1 Ma~k~~f~lL~v~~ 14 (68)
|++|.++.+..++.
T Consensus 9 mg~K~~~i~s~l~~ 22 (47)
T d3cx5d2 9 LGLKTVIILSSLYL 22 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55676664444433
No 6
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=11.99 E-value=16 Score=20.16 Aligned_cols=30 Identities=20% Similarity=0.583 Sum_probs=18.6
Q ss_pred hhhhccCCcchHHHHHHHHHhCccccCcccccccc
Q 044654 33 CWNVLMNLKSCSNEIVIFFLNSQADIGPDCCRVID 67 (68)
Q Consensus 33 Cwssl~~v~gC~~EI~~~~~~G~~~igp~CC~Ai~ 67 (68)
|=+.+.++-.|.. |++|.....+.||.+++
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~ 32 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVR 32 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHH
Confidence 4444555555543 45665458899998764
No 7
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=6.80 E-value=47 Score=15.38 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=6.3
Q ss_pred hhhhhhhccC
Q 044654 30 STTCWNVLMN 39 (68)
Q Consensus 30 ~~~Cwssl~~ 39 (68)
..+|||---.
T Consensus 4 skecwsvcqr 13 (31)
T d1cmra_ 4 SKECWSVCQR 13 (31)
T ss_dssp GGGSSSSSTT
T ss_pred cHHHHHHHHH
Confidence 4679985433
No 8
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.49 E-value=1e+02 Score=17.23 Aligned_cols=11 Identities=0% Similarity=0.283 Sum_probs=6.4
Q ss_pred hhhhhhccCCc
Q 044654 31 TTCWNVLMNLK 41 (68)
Q Consensus 31 ~~Cwssl~~v~ 41 (68)
.+|+.||.+++
T Consensus 52 ~~~y~sl~dlp 62 (129)
T d2csua1 52 VKAYKSVKDIP 62 (129)
T ss_dssp EECBSSTTSCS
T ss_pred eEeecchhhcC
Confidence 45666666554
No 9
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=6.15 E-value=69 Score=14.18 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=8.1
Q ss_pred HhCccc-cCcccc
Q 044654 52 LNSQAD-IGPDCC 63 (68)
Q Consensus 52 ~~G~~~-igp~CC 63 (68)
.-|+++ |-.+|=
T Consensus 7 scgktghikkdck 19 (26)
T d1dsqa_ 7 SCGKTGHIKRDCK 19 (26)
T ss_dssp TTCCBSSCTTTTT
T ss_pred ecCCcccchhhhh
Confidence 457777 777773
No 10
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.74 E-value=1.7e+02 Score=13.84 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHH
Q 044654 3 LKHVFFILALTF 14 (68)
Q Consensus 3 ~k~~f~lL~v~~ 14 (68)
|-..|++|+.++
T Consensus 19 IPv~f~lLafVW 30 (37)
T d2axtk1 19 IPVLFLALAFVW 30 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666666655
Done!